BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037938
(402 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 118/409 (28%), Positives = 205/409 (50%), Gaps = 44/409 (10%)
Query: 9 KEATVIYPSEPTPSTVLSLSALDSQLFLRFTIEYLLVYRPRPGLDSLATVARVKSALAKA 68
KE+T++ P++ TP L S +D + F + YRP G + +K AL++A
Sbjct: 8 KESTMVRPAQETPGRNLWNSNVD-LVVPNFHTPSVYFYRPT-GSSNFFDAKVLKDALSRA 65
Query: 69 LVPYYPLAGRVRAKQEGSGLLEVVCLGQGAVFIEAVDRESTIDDF-ERAPRYVTQWRKLL 127
LVP+YP+AGR++ ++G +E+ C G+G +F+EA + + +DDF + AP + R+L+
Sbjct: 66 LVPFYPMAGRLKRDEDGR--IEIECNGEGVLFVEA-ESDGVVDDFGDFAP--TLELRRLI 120
Query: 128 SLYVADVLKGVPP---LVVQLTWLRDGAAALGIGFNHCVCDGIGSAEFLNLFTELSTSRH 184
D +G+ LV+Q+T+ + G +LG+G H DG F+N +++++
Sbjct: 121 P--AVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMAR--- 175
Query: 185 NELGGGHSLPKPVWDRHLMNSSSSRQQHAHTRASSVSHLEFNRVADLCGFVSRFSNERLV 244
G +LP P DR L+ + Q H+E+ L ++ +
Sbjct: 176 ---GLDVTLP-PFIDRTLLRARDPPQPQ-------FQHIEYQPPPALKVSPQTAKSDSVP 224
Query: 245 PTSITFDKRRLNELRKL-ALSTSRPSELAYTSFEVLSAHVWRSWARSLNLPSNQILKLLF 303
T+++ K ++ L A S + ++Y+S+E+L+ HVWR ++ L +Q KL
Sbjct: 225 ETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEVDQGTKLYI 284
Query: 304 SINVRNRVKPSLPSGYYGNAFVLGCAQTRVKDLTEKGLGHAAMLVKKAKERVDSEYVKSV 363
+ + R R++PSLP GY+GN DL K + +AA + A R+D++Y++S
Sbjct: 285 ATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARMDNDYLRSA 344
Query: 364 IDSV------------SQTRACPDSVGVLIVSQWSRLGLERVDFGMGRP 400
+D + + T CP+ L ++ W RL + DFG GRP
Sbjct: 345 LDYLELQPDLKALVRGAHTFKCPN----LGITSWVRLPIHDADFGWGRP 389
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 161 bits (408), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 118/417 (28%), Positives = 208/417 (49%), Gaps = 44/417 (10%)
Query: 1 MAASPLHGKEATVIYPSEPTPSTVLSLSALDSQLFLRFTIEYLLVYRPRPGLDSLATVAR 60
M + + KE+T++ P++ TP L S +D + F + YRP G +
Sbjct: 3 MGSMKIEVKESTMVRPAQETPGRNLWNSNVD-LVVPNFHTPSVYFYRPT-GSSNFFDAKV 60
Query: 61 VKSALAKALVPYYPLAGRVRAKQEGSGLLEVVCLGQGAVFIEAVDRESTIDDF-ERAPRY 119
+K AL++ALVP+YP+AGR++ ++G +E+ C G+G +F+EA + + +DDF + AP
Sbjct: 61 LKDALSRALVPFYPMAGRLKRDEDGR--IEIECNGEGVLFVEA-ESDGVVDDFGDFAP-- 115
Query: 120 VTQWRKLLSLYVADVLKGVPP---LVVQLTWLRDGAAALGIGFNHCVCDGIGSAEFLNLF 176
+ R+L+ D +G+ LV+Q+T+ + G +LG+G H DG F+N +
Sbjct: 116 TLELRRLIP--AVDYSQGISSYALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSW 173
Query: 177 TELSTSRHNELGGGHSLPKPVWDRHLMNSSSSRQQHAHTRASSVSHLEFNRVADLCGFVS 236
++++ G +LP P DR L+ + Q H+E+ L
Sbjct: 174 SDMAR------GLDVTLP-PFIDRTLLRARDPPQPQ-------FQHIEYQPPPALAVSPQ 219
Query: 237 RFSNERLVPTSITFDKRRLNELRKL-ALSTSRPSELAYTSFEVLSAHVWRSWARSLNLPS 295
+++ + T+++ K ++ L A S + ++Y+S+E+L+ HVWR ++ L
Sbjct: 220 TAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEV 279
Query: 296 NQILKLLFSINVRNRVKPSLPSGYYGNAFVLGCAQTRVKDLTEKGLGHAAMLVKKAKERV 355
+Q KL + + R R++PSLP GY+GN DL K + +AA + A R+
Sbjct: 280 DQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARM 339
Query: 356 DSEYVKSVIDSV------------SQTRACPDSVGVLIVSQWSRLGLERVDFGMGRP 400
D++Y++S +D + + T P+ L ++ W RL + DFG GRP
Sbjct: 340 DNDYLRSALDYLELQPDLKALVRGAHTFKXPN----LGITSWVRLPIHDADFGWGRP 392
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 160 bits (406), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 118/417 (28%), Positives = 208/417 (49%), Gaps = 44/417 (10%)
Query: 1 MAASPLHGKEATVIYPSEPTPSTVLSLSALDSQLFLRFTIEYLLVYRPRPGLDSLATVAR 60
M + + KE+T++ P++ TP L S +D + F + YRP G +
Sbjct: 3 MGSMKIEVKESTMVRPAQETPGRNLWNSNVD-LVVPNFHTPSVYFYRPT-GSSNFFDAKV 60
Query: 61 VKSALAKALVPYYPLAGRVRAKQEGSGLLEVVCLGQGAVFIEAVDRESTIDDF-ERAPRY 119
+K AL++ALVP+YP+AGR++ ++G +E+ C G+G +F+EA + + +DDF + AP
Sbjct: 61 LKDALSRALVPFYPMAGRLKRDEDGR--IEIECNGEGVLFVEA-ESDGVVDDFGDFAP-- 115
Query: 120 VTQWRKLLSLYVADVLKGVPP---LVVQLTWLRDGAAALGIGFNHCVCDGIGSAEFLNLF 176
+ R+L+ D +G+ LV+Q+T+ + G +LG+G H DG F+N +
Sbjct: 116 TLELRRLIP--AVDYSQGISSYALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSW 173
Query: 177 TELSTSRHNELGGGHSLPKPVWDRHLMNSSSSRQQHAHTRASSVSHLEFNRVADLCGFVS 236
++++ G +LP P DR L+ + Q H+E+ L
Sbjct: 174 SDMAR------GLDVTLP-PFIDRTLLRARDPPQPQ-------FQHIEYQPPPALAVSPQ 219
Query: 237 RFSNERLVPTSITFDKRRLNELRKL-ALSTSRPSELAYTSFEVLSAHVWRSWARSLNLPS 295
+++ + T+++ K ++ L A S + ++Y+S+E+L+ HVWR ++ L
Sbjct: 220 TAASDSVPETAVSIFKLTREQISALKAKSKEDGNTISYSSYEMLAGHVWRCACKARGLEV 279
Query: 296 NQILKLLFSINVRNRVKPSLPSGYYGNAFVLGCAQTRVKDLTEKGLGHAAMLVKKAKERV 355
+Q KL + + R R++PSLP GY+GN DL K + +AA + A R+
Sbjct: 280 DQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWYAASKIHDALARM 339
Query: 356 DSEYVKSVIDSV------------SQTRACPDSVGVLIVSQWSRLGLERVDFGMGRP 400
D++Y++S +D + + T P+ L ++ W RL + DFG GRP
Sbjct: 340 DNDYLRSALDYLELQPDLKALVRGAHTFKXPN----LGITSWVRLPIHDADFGWGRP 392
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 99/408 (24%), Positives = 174/408 (42%), Gaps = 71/408 (17%)
Query: 13 VIYPSEPTPSTV--LSLSALDSQLFLRFTIEYLLVYRPRP---GLDSLATVARVKSALAK 67
+I PS PTP ++ +S LD QL L I ++L Y P P LD T +K +L+K
Sbjct: 12 LILPSSPTPQSLKCYKISHLD-QLLLTCHIPFILFY-PNPLDSNLDPAQTSQHLKQSLSK 69
Query: 68 ALVPYYPLAGRVRAKQEGSGLLEVVCLGQGAVFIEAVDRESTIDDFERAPRYVTQWRKLL 127
L +YPLAGR+ V C G F+EA + +A + V + KL
Sbjct: 70 VLTHFYPLAGRINVNSS------VDCNDSGVPFVEARVQAQ----LSQAIQNVVELEKLD 119
Query: 128 SLYVADVLKGVP-------PLVVQLTWLRDGAAALGIGFNHCVCDGIGSAEFLNLFTELS 180
+ G PL V++++ G A+G+ +H + D + A FLN +T +
Sbjct: 120 QYLPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWT--A 177
Query: 181 TSRHNELGGGHSLPKPVWD---RHL--MNSSSSRQQHAHTRASSVSHLEFNRVADLCGFV 235
T R G + P +D RH ++++ S +
Sbjct: 178 TCR-----GETEIVLPNFDLAARHFPPVDNTPSPE------------------------- 207
Query: 236 SRFSNERLVPTSITFDKRRLNELRKLALSTSRPSELAYTSFEVLSAHVWR---SWARSLN 292
+E +V FDK ++ LR A S S E ++ +++ A++W+ R+
Sbjct: 208 -LVPDENVVMKRFVFDKEKIGALRAQASSASE--EKNFSRVQLVVAYIWKHVIDVTRAKY 264
Query: 293 LPSNQILKLLFSINVRNRVKPSLPSGYYGNAFVLGCAQTRVKDLTEKGLGHAAMLVKKAK 352
N+ + ++ ++N+R+R+ P LP GN L A + +K ++ +
Sbjct: 265 GAKNKFV-VVQAVNLRSRMNPPLPHYAMGNIATLLFAAVDAE--WDKDFPDLIGPLRTSL 321
Query: 353 ERVDSEYVKSVIDSVSQTRACPDSVGVLIVSQWSRLGLERVDFGMGRP 400
E+ + ++ ++ ++ + +L + W RLG +DFG G+P
Sbjct: 322 EKTEDDHNHELLKGMTCLYEL-EPQELLSFTSWCRLGFYDLDFGWGKP 368
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 78.2 bits (191), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 161/358 (44%), Gaps = 28/358 (7%)
Query: 58 VARVKSALAKALVPYYPLAGRVRAKQEGSGLLEVVCLGQGAVFIEAVDRESTIDDFE-RA 116
V +K +L+ L +YP G++ + E+ + +V + + +++
Sbjct: 62 VPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNH 121
Query: 117 PRYVTQWRKLL-----SLYVADVLKGVPPLVVQLTWLRDGAAALGIGFNHCVCDGIGSAE 171
PR ++ L+ S ++D +K +P VQ+T + A+GI +HC+ D
Sbjct: 122 PRNCDKFYDLVPILGESTRLSDCIK-IPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFC 180
Query: 172 FLNLFTELSTSRHNELGGGHSLPKPVWDRHLMNSSSSRQQHAHTRASSVSHLEFNRVAD- 230
FL +T ++ S +N+ + +P++DR + A+ + + V + V
Sbjct: 181 FLKAWTSIARSGNNDESFLANGTRPLYDRII---KYPMLDEAYLKRAKVESFNEDYVTQS 237
Query: 231 LCGFVSRFSNERLVPTSITFDKRRLNELRKLALSTSRPSELAYTSFEVLSAHVWRSWARS 290
L G +++L T I + +N+L+ L+ P+ +SF V A++W A+S
Sbjct: 238 LAG-----PSDKLRATFI-LTRAVINQLKDRVLA-QLPTLEYVSSFTVACAYIWSCIAKS 290
Query: 291 LNLPSNQILKLLFSINVRNRVKPSLPSGYYGNAFVLGCAQTRVKDLT--EKGLGHAAMLV 348
N +++ F I+ R R+KP +P+ Y+GN V GCA +L ++G AA L+
Sbjct: 291 RN---DKLQLFGFPIDRRARMKPPIPTAYFGNC-VGGCAAIAKTNLLIGKEGFITAAKLI 346
Query: 349 KKAKERVDSEYVKSVIDSVSQTRACPDSVGVLIVSQW----SRLGLERVDFGMGRPTQ 402
+ + ++Y V+ ++ S G+ W +L +DFG G+P +
Sbjct: 347 GENLHKTLTDYKDGVLKDDMESFNDLVSEGMPTTMTWVSGTPKLRFYDMDFGWGKPKK 404
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 158/358 (44%), Gaps = 28/358 (7%)
Query: 58 VARVKSALAKALVPYYPLAGRVRAKQEGSGLLEVVCLGQGAVFIEAVDRESTIDDFE-RA 116
V +K +L+ L +YP G++ + E+ + +V + + +++
Sbjct: 62 VPNIKHSLSITLKHFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDLNELTGNH 121
Query: 117 PRYVTQWRKLL-----SLYVADVLKGVPPLVVQLTWLRDGAAALGIGFNHCVCDGIGSAE 171
PR ++ L+ S ++D +K +P VQ+T + A+GI +HC+ D
Sbjct: 122 PRNCDKFYDLVPILGESTRLSDCIK-IPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFC 180
Query: 172 FLNLFTELSTSRHNELGGGHSLPKPVWDRHLMNSSSSRQQHAHTRASSVSHLEFNRVAD- 230
FL +T ++ S +N+ + +P++DR + A+ + + V + V
Sbjct: 181 FLKAWTSIARSGNNDESFLANGTRPLYDRII---KYPXLDEAYLKRAKVESFNEDYVTQS 237
Query: 231 LCGFVSRFSNERLVPTSITFDKRRLNELRKLALSTSRPSELAYTSFEVLSAHVWRSWARS 290
L G +++L T I + +N+L+ L+ P+ +SF V A++W A+S
Sbjct: 238 LAG-----PSDKLRATFI-LTRAVINQLKDRVLA-QLPTLEYVSSFTVACAYIWSCIAKS 290
Query: 291 LNLPSNQILKLLFSINVRNRVKPSLPSGYYGNAFVLGCAQTRVKDLT--EKGLGHAAMLV 348
N +++ F I+ R R KP +P+ Y+GN V GCA +L ++G AA L+
Sbjct: 291 RN---DKLQLFGFPIDRRARXKPPIPTAYFGNC-VGGCAAIAKTNLLIGKEGFITAAKLI 346
Query: 349 KKAKERVDSEYVKSVIDSVSQTRACPDSVGVLIVSQW----SRLGLERVDFGMGRPTQ 402
+ + ++Y V+ ++ S G W +L DFG G+P +
Sbjct: 347 GENLHKTLTDYKDGVLKDDXESFNDLVSEGXPTTXTWVSGTPKLRFYDXDFGWGKPKK 404
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 92/370 (24%), Positives = 146/370 (39%), Gaps = 49/370 (13%)
Query: 58 VARVKSALAKALVPYYPLAGRVRAKQEGSGLLEVVCLGQGAVFIEAVDRESTIDDFERAP 117
+ +K +L+ L Y PLAG V Q+ SG E+ + +V +V + DF
Sbjct: 57 IPTLKDSLSLTLKYYLPLAGNVACPQDWSGYPELRYVTGNSV---SVIFSESDXDFNYLI 113
Query: 118 RYVTQWRKLLSLYVADVLK-----GV---PPLVVQLTWLRDGAAALGIGFNHCVCDGIGS 169
Y + K +V + + GV P L +Q+T + ++G +H DG
Sbjct: 114 GYHPRNTKDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATI 173
Query: 170 AEFLNLFTELSTSRHNELGGGHSLPK----PVWDRHLMNSSSSRQQHAHTRASSVSHLEF 225
+F+ + L N+ GG P +DR ++ + H
Sbjct: 174 VKFVRAWALL-----NKFGGDEQFLANEFIPFYDRSVIKDPNGVGXSIWNEXKKYKHXX- 227
Query: 226 NRVADLCGFVSRFSNERLVPTSITFDKRRLNELRKLALSTSRPSELAYTSFEVLSAHVWR 285
+ +D+ + V + + + +L+ L L T RP TSF V A+VW
Sbjct: 228 -KXSDVV------TPPDKVRGTFIITRHDIGKLKNLVL-TRRPKLTHVTSFTVTCAYVWT 279
Query: 286 SWARSLNLPSNQILK-----LLFSINVRNRVKPSLPSGYYGNAFVLGCAQTRVKDLTEK- 339
+S +I + + + R + P LP Y+GNA V A+TR DL K
Sbjct: 280 CIIKSEAATGEEIDENGXEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKE 339
Query: 340 GLGHAAMLVKKA--KERVDSEYVKS-----VIDSVSQTRACPDSVGVLIVSQWSRLGLER 392
G A L+ +A K D E++ S D V R+ L V+ +L L
Sbjct: 340 GFTIAVELIGEAIRKRXKDEEWILSGSWFKEYDKVDAKRS-------LSVAGSPKLDLYA 392
Query: 393 VDFGMGRPTQ 402
DFG GRP +
Sbjct: 393 ADFGWGRPEK 402
>pdb|2RKV|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And T-2 Mycotoxin
pdb|3B2S|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And Deoxynivalenol
pdb|3B30|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Ethyl Coenzyme A
Length = 451
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 111/280 (39%), Gaps = 41/280 (14%)
Query: 139 PPLVVQLTWLRDGAAALGIGFNHCVCDGIGSAEFLNLFTELSTSRHNELGGGHSLPKPVW 198
P +++QL +++ G L + H D +G + L LS + N+ P
Sbjct: 135 PVILLQLNFIK-GGLILTVNGQHGAMDMVGQDAVIRL---LSKACRND---------PFT 181
Query: 199 DRHLMNSSSSRQQ-----HAHTRASSVSHLEFNRVADLCGFVSRFSNERLVPTS-----I 248
+ + + R+ +T V H AD+ G + L P S
Sbjct: 182 EEEMTAMNLDRKTIVPYLENYTIGPEVDHQIVK--ADVAG-----GDAVLTPVSASWAFF 234
Query: 249 TFDKRRLNELRKLALSTSRPSELAYTSFEVLSAHVWRSWARSLNLPSNQILKLLFSINVR 308
TF + ++EL+ A T S ++ + LSA +W+S +R + F V
Sbjct: 235 TFSPKAMSELKDAATKTLDASTKFVSTDDALSAFIWKSASRVRLERIDGSAPTEFCRAVD 294
Query: 309 NRVKPSLPSGYYGNAFVLGCAQTRVKDLTEKGLGHAAMLVK--------KAKERVDSEYV 360
R + + Y G + + + ++ + LG A ++ + + R + Y+
Sbjct: 295 ARPAMGVSNNYPGLLQNMTYHNSTIGEIANESLGATASRLRSELDPASMRQRTRGLATYL 354
Query: 361 KSVID--SVSQTRACPDSVGVLIVSQWSRLGLERVDFGMG 398
+ D +VS T S V++ S W+++GL DFG+G
Sbjct: 355 HNNPDKSNVSLTADADPSTSVML-SSWAKVGLWDYDFGLG 393
>pdb|1CLA|A Chain A, Evidence For Transition-State Stabilization By Serine-148
In The Catalytic Mechanism Of Chloramphenicol
Acetyltransferase
Length = 213
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 127 LSLYVADVLKGVPPLVVQLTWLRDGA---AALGIGFNHCVCDGIGSAEFLNLFTELSTSR 183
+L VA+ P++ + ++G L + +H VCDG A F+N EL S+
Sbjct: 152 FNLNVANFTDYFAPIITMAKYQQEGDRLLLPLSVQVHHAVCDGFHVARFINRLQELCNSK 211
>pdb|3CLA|A Chain A, Refined Crystal Structure Of Type Iii Chloramphenicol
Acetyltransferase At 1.75 Angstroms Resolution
Length = 213
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 127 LSLYVADVLKGVPPLVVQLTWLRDGA---AALGIGFNHCVCDGIGSAEFLNLFTELSTSR 183
+L VA+ P++ + ++G L + +H VCDG A F+N EL S+
Sbjct: 152 FNLNVANFTDYFAPIITMAKYQQEGDRLLLPLSVQVHHAVCDGFHVARFINRLQELCNSK 211
>pdb|1QCA|A Chain A, Quadruple Mutant Q92c, N146f, Y168f, I172v Type Iii Cat
Complexed With Fusidic Acid. Crystals Grown At Ph 6.3.
X-Ray Data Collected At Room Temperature
Length = 213
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 127 LSLYVADVLKGVPPLVVQLTWLRDGA---AALGIGFNHCVCDGIGSAEFLNLFTELSTSR 183
+L VA+ P++ + ++G L + +H VCDG A F+N EL S+
Sbjct: 152 FNLNVANFTDFFAPVITMAKYQQEGDRLLLPLSVQVHHAVCDGFHVARFINRLQELCNSK 211
>pdb|4CLA|A Chain A, Alternative Binding Modes For Chloramphenicol And
1-substituted Chloramphenicol Analogues Revealed By
Site-directed Mutagenesis And X-ray Crystallography Of
Chloramphenicol Acetyltransferase
Length = 213
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 127 LSLYVADVLKGVPPLVVQLTWLRDGA---AALGIGFNHCVCDGIGSAEFLNLFTELSTSR 183
+ VA+ P++ + ++G L + +H VCDG A F+N EL S+
Sbjct: 152 FNFNVANFTDYFAPIITMAKYQQEGDRLLLPLSVQVHHAVCDGFHVARFINRLQELCNSK 211
>pdb|2CLA|A Chain A, Crystal Structure Of The Asp-199-Asn Mutant Of
Chloramphenicol Acetyltransferase To 2.35 Angstroms
Resolution. Structural Consequences Of Disruption Of A
Buried Salt-Bridge
Length = 213
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 127 LSLYVADVLKGVPPLVVQLTWLRDGA---AALGIGFNHCVCDGIGSAEFLNLFTELSTSR 183
+L VA+ P++ + ++G L + +H VC+G A F+N EL S+
Sbjct: 152 FNLNVANFTDYFAPIITMAKYQQEGDRLLLPLSVQVHHAVCNGFHVARFINRLQELCNSK 211
>pdb|1CIA|A Chain A, Replacement Of Catalytic Histidine-195 Of Chloramphenicol
Acetyltransferase: Evidence For A General Base Role For
Glutamate
Length = 213
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 127 LSLYVADVLKGVPPLVVQLTWLRDGA---AALGIGFNHCVCDGIGSAEFLNLFTELSTSR 183
+L VA+ P++ + ++G L + + VCDG A F+N EL S+
Sbjct: 152 FNLNVANFTDYFAPIITMAKYQQEGDRLLLPLSVQVHQAVCDGFHVARFINRLQELCNSK 211
>pdb|2RKT|A Chain A, Crystal Sructure Of Apo F. Graminearum Tri101
Length = 452
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 60/280 (21%), Positives = 107/280 (38%), Gaps = 41/280 (14%)
Query: 139 PPLVVQLTWLRDGAAALGIGFNHCVCDGIGSAEFLNLFTELSTSRHNELGGGHSLPKPVW 198
P +++QL +++ G L + H D +G + L LS + N+ P
Sbjct: 136 PVILLQLNFIK-GGLILTVNGQHGAXDXVGQDAVIRL---LSKACRND---------PFT 182
Query: 199 DRHLMNSSSSRQQ-----HAHTRASSVSHLEFNRVADLCGFVSRFSNERLVPTS-----I 248
+ + R+ +T V H AD+ G + L P S
Sbjct: 183 EEEXTAXNLDRKTIVPYLENYTIGPEVDHQIVK--ADVAG-----GDAVLTPVSASWAFF 235
Query: 249 TFDKRRLNELRKLALSTSRPSELAYTSFEVLSAHVWRSWARSLNLPSNQILKLLFSINVR 308
TF + +EL+ A T S ++ + LSA +W+S +R + F V
Sbjct: 236 TFSPKAXSELKDAATKTLDASTKFVSTDDALSAFIWKSASRVRLERIDGSAPTEFCRAVD 295
Query: 309 NRVKPSLPSGYYGNAFVLGCAQTRVKDLTEKGLGHAAMLVK--------KAKERVDSEYV 360
R + + Y G + + ++ + LG A ++ + + R + Y+
Sbjct: 296 ARPAXGVSNNYPGLLQNXTYHNSTIGEIANESLGATASRLRSELDPASXRQRTRGLATYL 355
Query: 361 KSVID--SVSQTRACPDSVGVLIVSQWSRLGLERVDFGMG 398
+ D +VS T S V + S W+++GL DFG+G
Sbjct: 356 HNNPDKSNVSLTADADPSTSVXL-SSWAKVGLWDYDFGLG 394
>pdb|2ZBA|A Chain A, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|B Chain B, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|C Chain C, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|D Chain D, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
Length = 459
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 67/162 (41%), Gaps = 13/162 (8%)
Query: 248 ITFDKRRLNELRKLALSTSRPSELAYTSFEVLSAHVWRSWARSLNLPSNQILKLLFSINV 307
+F + L+EL+ A T S ++ + LSA +W+S +R + F V
Sbjct: 242 FSFTPKALSELKDAATKTLDASSKFVSTDDALSAFIWQSTSRVRLARLDASTPTEFCRAV 301
Query: 308 RNRVKPSLPSGYYGNAFVLGCAQTRVKDLTEKGLGHAAMLVK--------KAKERVDSEY 359
R + S Y G + V ++ + LG A ++ + + + + Y
Sbjct: 302 DXRGPXGVSSTYPGLLQNXTYHDSTVAEIANEPLGATASRLRSELNSDRLRRRTQALATY 361
Query: 360 VKSVID--SVSQT-RACPDSVGVLIVSQWSRLGLERVDFGMG 398
+ D SVS T A P S + +S W+++G DFG G
Sbjct: 362 XHGLPDKSSVSLTADANPSS--SIXLSSWAKVGCWEYDFGFG 401
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,395,718
Number of Sequences: 62578
Number of extensions: 436090
Number of successful extensions: 1165
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1119
Number of HSP's gapped (non-prelim): 21
length of query: 402
length of database: 14,973,337
effective HSP length: 101
effective length of query: 301
effective length of database: 8,652,959
effective search space: 2604540659
effective search space used: 2604540659
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)