Query 037939
Match_columns 309
No_of_seqs 68 out of 70
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 09:38:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037939.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037939hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 94.1 0.042 1.4E-06 42.6 3.7 39 232-270 12-50 (79)
2 4dlo_A Brain-specific angiogen 93.7 3.3 0.00011 39.5 17.0 106 84-213 244-371 (382)
3 2ks1_B Epidermal growth factor 93.0 0.01 3.4E-07 41.7 -1.3 20 233-252 13-32 (44)
4 2l8s_A Integrin alpha-1; trans 92.1 0.0029 9.8E-08 46.4 -5.2 40 229-268 8-48 (54)
5 2l2t_A Receptor tyrosine-prote 91.4 0.021 7.3E-07 40.1 -1.1 20 233-252 12-31 (44)
6 3ud1_A Ankyrin-1; beta sandwic 86.6 5 0.00017 38.4 10.9 128 58-213 1-162 (326)
7 2knc_A Integrin alpha-IIB; tra 85.8 0.012 4.2E-07 43.0 -5.8 19 229-247 11-29 (54)
8 2jwa_A Receptor tyrosine-prote 84.3 0.14 4.7E-06 36.0 -0.8 19 233-252 14-32 (44)
9 2klu_A T-cell surface glycopro 79.8 0.093 3.2E-06 40.0 -3.2 30 229-259 6-35 (70)
10 2jwa_A Receptor tyrosine-prote 78.8 0.69 2.3E-05 32.4 1.2 31 234-265 11-41 (44)
11 2k1k_A Ephrin type-A receptor 63.0 2 7E-05 28.9 0.6 21 233-253 13-33 (38)
12 2ks1_B Epidermal growth factor 60.3 1.8 6.1E-05 30.2 -0.1 29 234-263 10-39 (44)
13 2k9j_B Integrin beta-3; transm 57.8 4.4 0.00015 27.9 1.6 16 233-248 12-27 (43)
14 2knc_B Integrin beta-3; transm 53.3 10 0.00036 29.0 3.2 30 236-266 12-42 (79)
15 2k1a_A Integrin alpha-IIB; sin 52.7 2.1 7.1E-05 29.6 -0.8 21 229-252 9-29 (42)
16 2l2t_A Receptor tyrosine-prote 49.1 3.5 0.00012 28.8 -0.1 31 234-265 9-40 (44)
17 3f59_A Ankyrin-1; beta sandwic 44.5 26 0.0009 30.4 4.7 88 58-167 1-90 (161)
18 1cd1_A CD1, MCD1D.1; immunolog 42.5 16 0.00056 33.4 3.3 74 127-206 184-267 (315)
19 4dlq_A Latrophilin-1; GAIN dom 39.6 28 0.00096 32.8 4.5 50 123-186 303-352 (381)
20 3g5b_A Netrin receptor UNC5B; 39.0 1.9E+02 0.0064 28.2 10.3 40 84-131 24-65 (405)
21 1s7q_A H-2KB, H-2 class I hist 38.3 17 0.00058 34.0 2.8 26 181-206 234-266 (348)
22 2kxr_A Tight junction protein 35.1 33 0.0011 28.2 3.7 72 71-166 13-88 (118)
23 2kxs_A Tight junction protein 33.2 48 0.0016 28.3 4.5 61 84-166 39-102 (146)
24 2l6w_A Beta-type platelet-deri 28.9 17 0.00059 24.8 0.0 21 245-265 19-39 (39)
25 3azd_A Short alpha-tropomyosin 23.1 36 0.0012 22.5 1.6 15 261-275 10-24 (37)
26 2k9y_A Ephrin type-A receptor 22.9 11 0.00038 24.7 -1.0 10 233-242 15-24 (41)
27 1iij_A ERBB-2 receptor protein 21.3 9.5 0.00032 25.5 -1.6 15 236-251 13-27 (35)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=94.05 E-value=0.042 Score=42.57 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=22.8
Q ss_pred EEeecchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 037939 232 LAVGTTVGAAVGAFLLGLLLVAMFVKVKKKARMEELERR 270 (309)
Q Consensus 232 ~ivg~vvGg~~glvlLgll~v~~~vr~~rkkr~~eMEr~ 270 (309)
.||++++||+++++|+.+++.-.++....||+-+++|++
T Consensus 12 ~Iv~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE 50 (79)
T 2knc_B 12 VVLLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEE 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777666666555544444455555666666544
No 2
>4dlo_A Brain-specific angiogenesis inhibitor 3; GAIN domain, includes GPS motif, autoproteolytic fold, extra signaling protein; HET: NAG FUL; 2.30A {Homo sapiens}
Probab=93.71 E-value=3.3 Score=39.48 Aligned_cols=106 Identities=13% Similarity=0.226 Sum_probs=65.8
Q ss_pred eeEeCCcceeccc--------eeEEE-EEEeecCCCccccccccCCCCCCeEeceeeeeeeecCCCCcCCCCceEEEEee
Q 037939 84 EFHLGIGVIVQPC--------VERVV-VVRQNLGYNWSSIYYANYDLSGYQLVSPVLGILAYNSVTDVNFNNRFELQILA 154 (309)
Q Consensus 84 eF~IP~gv~~~P~--------v~Rv~-lVyqnLG~NwSs~yy~~y~lpGY~lvsPVlGllaYdas~~~~~~n~~el~i~a 154 (309)
...||......+- +..+. +.|++||. +.+. +-....+-++|++.-..+... +
T Consensus 244 ~V~ip~~~~~~~~~~~~~~~~~~v~~~v~y~~lg~-----~L~~-~~~~~~lns~Vis~sv~~~~~-----~-------- 304 (382)
T 4dlo_A 244 RVVIPKSIFTPVSSKELDESSVFVLGAVLYKNLDL-----ILPT-LRNYTVINSKIIVVTIRPEPK-----T-------- 304 (382)
T ss_dssp EEEECGGGGSCCCC--CCTTCEEEEEEEEESSGGG-----TSCC-CSTTEEECSCEEEEEEESCCC-----C--------
T ss_pred eEEcCHHHhcccccccCCCCceEEEEEEEECChHH-----hcCC-CCCCeeeeceEEEEEcCCCCc-----c--------
Confidence 3677766553321 33333 56999993 3221 111367889999998875331 1
Q ss_pred CCCceEEEcCCCccccCCCCCcceeEEEccCC-------------eEEEEecCCCceeEeeccceeEEEEeC
Q 037939 155 NGKPITIDFRNTTRVTNISGIKPFCANFQRDG-------------KVTLTNQVSPYVCVARKHGHFGLVTKY 213 (309)
Q Consensus 155 ~~~PI~V~F~~~~~~~~~~~~~~~Cv~F~~~G-------------~~~~~~~~~~nvC~~~~~GHfslVV~~ 213 (309)
..+||.|.|.+... +...+.||.+|.+. .+..++ ..--+|.-....||+|-...
T Consensus 305 l~~pV~i~f~h~~~----~~~~~~Cv~W~~~~~~~~~g~Ws~~GC~~~~~~-~~~t~C~C~Hlt~FavLm~~ 371 (382)
T 4dlo_A 305 TDSFLEIELAHLAN----GTLNPYCVLWDDSKTNESLGTWSTQGCKTVLTD-ASHTKCLCDRLSTFAILAQQ 371 (382)
T ss_dssp TTCCEEEEEECSCS----SCEEEEEEEEECC---CTTCEEECTTEEEEEEE-TTEEEEEESSCSEEEEEEEC
T ss_pred cCCCEEEEEEeccC----CCCCceEeeeCCcCCCCCCCCccccccEEEEeC-CCEEEEECCCCchHHhhccc
Confidence 23699999998642 33578999999764 222222 23456777889999998854
No 3
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=92.99 E-value=0.01 Score=41.71 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=14.3
Q ss_pred EeecchhHHHHHHHHHHHHH
Q 037939 233 AVGTTVGAAVGAFLLGLLLV 252 (309)
Q Consensus 233 ivg~vvGg~~glvlLgll~v 252 (309)
|+++|+||+++++++++++.
T Consensus 13 IA~gVVgGv~~~~ii~~~~~ 32 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIG 32 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHH
T ss_pred EEeehhHHHHHHHHHHHHHH
Confidence 67888998877776665443
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=92.07 E-value=0.0029 Score=46.35 Aligned_cols=40 Identities=28% Similarity=0.204 Sum_probs=19.2
Q ss_pred ceEEEeecchhHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Q 037939 229 RWKLAVGTTVGAAVGAFLLGLLLV-AMFVKVKKKARMEELE 268 (309)
Q Consensus 229 ~Wk~ivg~vvGg~~glvlLgll~v-~~~vr~~rkkr~~eME 268 (309)
.||+|+++++||.+.+.++.+++- +-+.|.+|+...+++|
T Consensus 8 p~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~~~~~~~~ 48 (54)
T 2l8s_A 8 PLWVILLSAFAGLLLLMLLILALWKIGFFKRPLKKKMEKLE 48 (54)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCC--
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCcchhhHHh
Confidence 566788888887544444333222 2223444444444444
No 5
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=91.45 E-value=0.021 Score=40.09 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=14.1
Q ss_pred EeecchhHHHHHHHHHHHHH
Q 037939 233 AVGTTVGAAVGAFLLGLLLV 252 (309)
Q Consensus 233 ivg~vvGg~~glvlLgll~v 252 (309)
|+++|+||+++++++++++.
T Consensus 12 IA~gVVgGv~~v~ii~~~~~ 31 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVGLTFA 31 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHHHHHH
Confidence 67788888877766665443
No 6
>3ud1_A Ankyrin-1; beta sandwich, ZU5, adapter protein, spectrin binding, cytos protein binding; 2.00A {Homo sapiens} PDB: 3ud2_C
Probab=86.61 E-value=5 Score=38.39 Aligned_cols=128 Identities=15% Similarity=0.176 Sum_probs=77.3
Q ss_pred CCccCCeEE-EEEeecCccc---ccCceeeeeEeCCcceeccceeEEEEEEeecCCCccccccccCCC-CCCeEeceeee
Q 037939 58 ANLSGIKVD-MVRFRCGSLR---RYGARVKEFHLGIGVIVQPCVERVVVVRQNLGYNWSSIYYANYDL-SGYQLVSPVLG 132 (309)
Q Consensus 58 sNlSGi~Vs-avRlRsgSLr---r~G~~~~eF~IP~gv~~~P~v~Rv~lVyqnLG~NwSs~yy~~y~l-pGY~lvsPVlG 132 (309)
+|-||.=|| .|.=|.|+++ .-|+ .|.||||.+..|. |+-.-+-|-- .+-...+| .|=.|+|+|+-
T Consensus 1 ~~~~gflvsF~VdarGg~~~~~~~~Gv---rl~IPpgA~~~pt--rI~crl~~p~-----~~~~~ppL~~gE~LvS~Vle 70 (326)
T 3ud1_A 1 SNATGFLVSFMVDARGGSMRGSRHNGL---RVVIPPRTCAAPT--RITCRLVKPQ-----KLSTPPPLAEEEGLASRIIA 70 (326)
T ss_dssp ----CEEEEEEECTTCEEEECCTTTCC---EEEECTTSCSSCE--EEEEEEECGG-----GCSSCCCCCTTCEECSCEEE
T ss_pred CCccceEEEEEEeCCCCEEecccCCCE---EEEECCCCCCCCe--EEEEEEeccc-----ccCCCCccCCCcccccceEE
Confidence 467888888 7888999985 3455 3789999999995 5554443321 11011234 57899999998
Q ss_pred eeeecCCCCcCCCCceEEEEeeCCCceEEEcCCCccccCCCCCcceeEEEccCCeEEEEec-------------------
Q 037939 133 ILAYNSVTDVNFNNRFELQILANGKPITIDFRNTTRVTNISGIKPFCANFQRDGKVTLTNQ------------------- 193 (309)
Q Consensus 133 llaYdas~~~~~~n~~el~i~a~~~PI~V~F~~~~~~~~~~~~~~~Cv~F~~~G~~~~~~~------------------- 193 (309)
+--.++. + .+||.|.+++.... .....-..|.-..||. +=+..
T Consensus 71 lgP~G~~----------F-----~~PV~l~iPh~a~~--~~~~REivVlrSd~G~-~W~eh~~~~~~~~l~~~l~g~~~~ 132 (326)
T 3ud1_A 71 LGPTGAQ----------F-----LSPVIVEIPHFASH--GRGDRELVVLRSENGS-VWKEHRSRYGESYLDQILNGMDEE 132 (326)
T ss_dssp EESTTCE----------E-----EEEEEEEEECCCSC--CSSSEEEEEEEESSSS-CCEECCCSSCGGGHHHHTTTCCCC
T ss_pred eccCCcc----------C-----cccEEEEecccccc--CCCceEEEEEEecCCC-cceecccccchhHHHhhhcccccc
Confidence 7654432 3 25999999876433 2223555666666776 21111
Q ss_pred -------CCC--ceeEeecc-ceeEEEEeC
Q 037939 194 -------VSP--YVCVARKH-GHFGLVTKY 213 (309)
Q Consensus 194 -------~~~--nvC~~~~~-GHfslVV~~ 213 (309)
.+. ..|.+++. ++|++|-+.
T Consensus 133 ~~sle~~~k~r~~ri~v~~fp~~FaVVSRl 162 (326)
T 3ud1_A 133 LGSLEELEKKRVCRIITTDFPLYFVIMSRL 162 (326)
T ss_dssp CCCHHHHHC-CEEEEEEEECCSEEEEEEEE
T ss_pred ccchhhhcCceEEEEEecCCCeEEEEEeeE
Confidence 011 13678888 999999863
No 7
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=85.77 E-value=0.012 Score=42.98 Aligned_cols=19 Identities=11% Similarity=-0.013 Sum_probs=12.3
Q ss_pred ceEEEeecchhHHHHHHHH
Q 037939 229 RWKLAVGTTVGAAVGAFLL 247 (309)
Q Consensus 229 ~Wk~ivg~vvGg~~glvlL 247 (309)
.||+|+++++||++.+.++
T Consensus 11 p~wiIi~svl~GLllL~li 29 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTIL 29 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 6777888888875444333
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=84.31 E-value=0.14 Score=36.02 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=10.5
Q ss_pred EeecchhHHHHHHHHHHHHH
Q 037939 233 AVGTTVGAAVGAFLLGLLLV 252 (309)
Q Consensus 233 ivg~vvGg~~glvlLgll~v 252 (309)
|+++++| ++.+++++++++
T Consensus 14 Ia~~vVG-vll~vi~~l~~~ 32 (44)
T 2jwa_A 14 IISAVVG-ILLVVVLGVVFG 32 (44)
T ss_dssp HHHHHHH-HHHHHHHHHHHH
T ss_pred hHHHHHH-HHHHHHHHHHHH
Confidence 5566666 555555554443
No 9
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=79.79 E-value=0.093 Score=40.03 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=18.5
Q ss_pred ceEEEeecchhHHHHHHHHHHHHHHhhHHHH
Q 037939 229 RWKLAVGTTVGAAVGAFLLGLLLVAMFVKVK 259 (309)
Q Consensus 229 ~Wk~ivg~vvGg~~glvlLgll~v~~~vr~~ 259 (309)
.|-.++ .++||++++++|.-+.+++.+|.+
T Consensus 6 ~~p~~L-ivlGg~~~lll~~glcI~ccvkcr 35 (70)
T 2klu_A 6 RGSMAL-IVLGGVAGLLLFIGLGIFFSVRSR 35 (70)
T ss_dssp CCSSHH-HHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHH-HHHhHHHHHHHHHHHHHHHhhHHH
Confidence 343343 468988887777656665457553
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=78.80 E-value=0.69 Score=32.44 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=18.2
Q ss_pred eecchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 037939 234 VGTTVGAAVGAFLLGLLLVAMFVKVKKKARME 265 (309)
Q Consensus 234 vg~vvGg~~glvlLgll~v~~~vr~~rkkr~~ 265 (309)
+.+++|+++|++ +.+++...+.-+.|++|++
T Consensus 11 ~~~Ia~~vVGvl-l~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 11 LTSIISAVVGIL-LVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHCSC
T ss_pred ccchHHHHHHHH-HHHHHHHHHHhheehhhhh
Confidence 467889999944 4333433445566665544
No 11
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=62.98 E-value=2 Score=28.89 Aligned_cols=21 Identities=38% Similarity=0.357 Sum_probs=14.7
Q ss_pred EeecchhHHHHHHHHHHHHHH
Q 037939 233 AVGTTVGAAVGAFLLGLLLVA 253 (309)
Q Consensus 233 ivg~vvGg~~glvlLgll~v~ 253 (309)
|+|.++|.++|+.+++.++.+
T Consensus 13 IAGiVvG~v~gv~li~~l~~~ 33 (38)
T 2k1k_A 13 IVAVIFGLLLGAALLLGILVF 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeehHHHHHHHHHHHHHHH
Confidence 577788887777777665543
No 12
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=60.31 E-value=1.8 Score=30.20 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=16.9
Q ss_pred eecchhHHHH-HHHHHHHHHHhhHHHHHHHH
Q 037939 234 VGTTVGAAVG-AFLLGLLLVAMFVKVKKKAR 263 (309)
Q Consensus 234 vg~vvGg~~g-lvlLgll~v~~~vr~~rkkr 263 (309)
.+++++|++| +.++.++++..+ -+.|+||
T Consensus 10 ~~~IA~gVVgGv~~~~ii~~~~~-~~~RRr~ 39 (44)
T 2ks1_B 10 IPSIATGMVGALLLLLVVALGIG-LFMRRRH 39 (44)
T ss_dssp SSSSTHHHHHHHHHHHHHHHHHH-HHHHTTT
T ss_pred cceEEeehhHHHHHHHHHHHHHH-HHhhhhH
Confidence 4778888776 555665555543 3333333
No 13
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=57.78 E-value=4.4 Score=27.85 Aligned_cols=16 Identities=19% Similarity=0.075 Sum_probs=8.5
Q ss_pred EeecchhHHHHHHHHH
Q 037939 233 AVGTTVGAAVGAFLLG 248 (309)
Q Consensus 233 ivg~vvGg~~glvlLg 248 (309)
|+++++||++.++++.
T Consensus 12 Iv~gvi~~ivliGl~l 27 (43)
T 2k9j_B 12 VLLSVMGAILLIGLAA 27 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5666666654444433
No 14
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=53.27 E-value=10 Score=29.02 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=15.6
Q ss_pred cchhH-HHHHHHHHHHHHHhhHHHHHHHHHHH
Q 037939 236 TTVGA-AVGAFLLGLLLVAMFVKVKKKARMEE 266 (309)
Q Consensus 236 ~vvGg-~~glvlLgll~v~~~vr~~rkkr~~e 266 (309)
.++|| +.|++|+|++++++ .|....-.-+.
T Consensus 12 ~Iv~gvi~gilliGllllli-wk~~~~i~Drr 42 (79)
T 2knc_B 12 VVLLSVMGAILLIGLAALLI-WKLLITIHDRK 42 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 44444 44466677766654 56554333333
No 15
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=52.67 E-value=2.1 Score=29.63 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=13.0
Q ss_pred ceEEEeecchhHHHHHHHHHHHHH
Q 037939 229 RWKLAVGTTVGAAVGAFLLGLLLV 252 (309)
Q Consensus 229 ~Wk~ivg~vvGg~~glvlLgll~v 252 (309)
.||+|+++++||. .+|+++..
T Consensus 9 p~wiIi~s~l~GL---llL~li~~ 29 (42)
T 2k1a_A 9 PIWWVLVGVLGGL---LLLTILVL 29 (42)
T ss_dssp CHHHHHHHHHHHH---HHHHHHHH
T ss_pred chHHHHHHHHHHH---HHHHHHHH
Confidence 5667887777764 44554443
No 16
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=49.09 E-value=3.5 Score=28.78 Aligned_cols=31 Identities=10% Similarity=0.270 Sum_probs=16.4
Q ss_pred eecchhHHHH-HHHHHHHHHHhhHHHHHHHHHH
Q 037939 234 VGTTVGAAVG-AFLLGLLLVAMFVKVKKKARME 265 (309)
Q Consensus 234 vg~vvGg~~g-lvlLgll~v~~~vr~~rkkr~~ 265 (309)
.++++||++| +.++.++++.. .-+.|+||++
T Consensus 9 ~~aIA~gVVgGv~~v~ii~~~~-~~~~RRRr~~ 40 (44)
T 2l2t_A 9 TPLIAAGVIGGLFILVIVGLTF-AVYVRRKSIK 40 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSS
T ss_pred cceEEEeehHHHHHHHHHHHHH-HHHhhhhhhh
Confidence 3667777776 55555555444 3344444443
No 17
>3f59_A Ankyrin-1; beta sandwich, ZU5, spectrin binding, alternative P usage, ANK repeat, cytoskeleton, disease mutation; 2.00A {Homo sapiens} PDB: 3kbt_C 3kbu_C
Probab=44.52 E-value=26 Score=30.44 Aligned_cols=88 Identities=17% Similarity=0.191 Sum_probs=49.4
Q ss_pred CCccCCeEE-EEEeecCcccccCceeeeeEeCCcceeccceeEEEEEEeecCCCccccccccCCC-CCCeEeceeeeeee
Q 037939 58 ANLSGIKVD-MVRFRCGSLRRYGARVKEFHLGIGVIVQPCVERVVVVRQNLGYNWSSIYYANYDL-SGYQLVSPVLGILA 135 (309)
Q Consensus 58 sNlSGi~Vs-avRlRsgSLrr~G~~~~eF~IP~gv~~~P~v~Rv~lVyqnLG~NwSs~yy~~y~l-pGY~lvsPVlGlla 135 (309)
+|-+|.-|| .|.=|.|+++.....=-.|.||||.+..|- |+ .++-+- ...+-...+| +|=.|+|+||=+--
T Consensus 1 ~~~~gFlvSFlVdarGg~~~~~r~~GvrliiPpga~~~pt--rI--~cRl~~---p~~~~~~PpL~egE~LlSrvlElgP 73 (161)
T 3f59_A 1 SNATGFLVSFMVDARGGSMRGSRHNGLRVVIPPRTCAAPT--RI--TCRLVK---PQKLSTPPPLAEEEGLASRIIALGP 73 (161)
T ss_dssp ----CCSEEEEECTTCEEEECTTCSSCEEEECTTSCSSCE--EE--EEEEEC---GGGCSSCCCCCTTCEECSCEEEEES
T ss_pred CCccceEEEEEEeCCCCEEEcccCCCEEEEECCCCCCCCc--EE--EEEEEC---CcccCCCCCCCCCccccCceeeecC
Confidence 477888888 788889998853221124889999999986 43 333221 0111111234 57888888875543
Q ss_pred ecCCCCcCCCCceEEEEeeCCCceEEEcCCCc
Q 037939 136 YNSVTDVNFNNRFELQILANGKPITIDFRNTT 167 (309)
Q Consensus 136 Ydas~~~~~~n~~el~i~a~~~PI~V~F~~~~ 167 (309)
.++. + .+|+.++-++..
T Consensus 74 ~G~~----------F-----~~PV~leiPh~a 90 (161)
T 3f59_A 74 TGAQ----------F-----LSPVIVEIPHFA 90 (161)
T ss_dssp TTCE----------E-----EEEEEEEEECC-
T ss_pred CCcc----------c-----cCCEEEeccccc
Confidence 3221 2 247777777654
No 18
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=42.50 E-value=16 Score=33.38 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=36.6
Q ss_pred eceeeeeeeecCCCCcCCCCceEEEEeeCC---CceEEEcCCCccccCCCCCcceeEEEccCCeEEEEe-------cCCC
Q 037939 127 VSPVLGILAYNSVTDVNFNNRFELQILANG---KPITIDFRNTTRVTNISGIKPFCANFQRDGKVTLTN-------QVSP 196 (309)
Q Consensus 127 vsPVlGllaYdas~~~~~~n~~el~i~a~~---~PI~V~F~~~~~~~~~~~~~~~Cv~F~~~G~~~~~~-------~~~~ 196 (309)
+.|-+=+..-..+. .....|.-.+.| ++|.|....--.. ..+...-=+.-+.||+.+..- ....
T Consensus 184 ~~P~v~v~~~~~~~----~~~~~L~C~a~gFyP~~i~v~W~~~g~~--~~~~~~~~~~pn~Dgtfq~~~~l~v~~~~~~~ 257 (315)
T 1cd1_A 184 EKPVAWLSSVPSSA----HGHRQLVCHVSGFYPKPVWVMWMRGDQE--QQGTHRGDFLPNADETWYLQATLDVEAGEEAG 257 (315)
T ss_dssp BCCEEEEEEEECSS----SSCEEEEEEEEEEBSSCEEEEEEETTEE--CTTCEECCCEECTTSCEEEEEEEECCSSTTTT
T ss_pred CCCcceEEeCCCCC----CCceEEEEEEeeeeCCCcEEEEEEcccc--CCcccccceEECCCCCEEEEEEEEEccCCCCE
Confidence 56766665443321 112345555555 5777777421111 011111112335678877542 1346
Q ss_pred ceeEeeccce
Q 037939 197 YVCVARKHGH 206 (309)
Q Consensus 197 nvC~~~~~GH 206 (309)
+.|.+...|.
T Consensus 258 ysC~V~H~~l 267 (315)
T 1cd1_A 258 LACRVKHSSL 267 (315)
T ss_dssp EEEEEEETTC
T ss_pred EEEEEEeCcc
Confidence 8888887773
No 19
>4dlq_A Latrophilin-1; GAIN domain, includes the GPS motif, hormone binding domain, autoproteolysis, A-latrotoxin, extracellular domain; HET: NAG; 1.85A {Rattus norvegicus}
Probab=39.57 E-value=28 Score=32.79 Aligned_cols=50 Identities=10% Similarity=0.108 Sum_probs=34.3
Q ss_pred CCeEeceeeeeeeecCCCCcCCCCceEEEEeeCCCceEEEcCCCccccCCCCCcceeEEEccCC
Q 037939 123 GYQLVSPVLGILAYNSVTDVNFNNRFELQILANGKPITIDFRNTTRVTNISGIKPFCANFQRDG 186 (309)
Q Consensus 123 GY~lvsPVlGllaYdas~~~~~~n~~el~i~a~~~PI~V~F~~~~~~~~~~~~~~~Cv~F~~~G 186 (309)
...+.++|++...++... . ..| .+||.|.|.+.... ....+.||..|.+.
T Consensus 303 ~~~lnS~Vvs~sv~~~~~---~---~~L-----~~pV~itf~h~~~~---~~~~~~CvfW~~~~ 352 (381)
T 4dlq_A 303 SLVVNSQVIAASINKESS---R---VFL-----MDPVIFTVAHLEAK---NHFNANCSFWNYSE 352 (381)
T ss_dssp SEEECSCEEEEEESSTTC---C---CEE-----EEEEEEEEECSCCT---TEEEEEEEEEEECT
T ss_pred ceeeecceEEEEecCCCC---c---ccC-----CCCEEEEEEecCCC---CCCcccceecccCC
Confidence 367899999998876421 1 113 36999999987522 22478999998753
No 20
>3g5b_A Netrin receptor UNC5B; ZU5, death domain, UPA, apoptosis, developmental protein, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; 2.00A {Rattus norvegicus}
Probab=38.96 E-value=1.9e+02 Score=28.19 Aligned_cols=40 Identities=13% Similarity=0.110 Sum_probs=27.0
Q ss_pred eeEeCCcceeccceeEEEE-EEeecCCCccccccccCCCC-CCeEeceee
Q 037939 84 EFHLGIGVIVQPCVERVVV-VRQNLGYNWSSIYYANYDLS-GYQLVSPVL 131 (309)
Q Consensus 84 eF~IP~gv~~~P~v~Rv~l-VyqnLG~NwSs~yy~~y~lp-GY~lvsPVl 131 (309)
...||+|.++++-...+-+ |.++.. .-+ ++. |.+++|||+
T Consensus 24 sLlIP~GAi~~g~~~eiyl~v~~~~~------~~p--~l~~~etllSPvV 65 (405)
T 3g5b_A 24 SLLVPNGAIPQGKFYDLYLRINKTES------TLP--LSEGSQTVLSPSV 65 (405)
T ss_dssp EEEECTTSSCTTCCEEEEEEECCGGG------GGG--GCSTTEEECSCCE
T ss_pred EEEECCCcCCCCCEEEEEEEEecccC------CCC--CCCCCccccCceE
Confidence 3889999999997655543 333322 221 454 699999998
No 21
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=38.26 E-value=17 Score=34.03 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=15.8
Q ss_pred EEccCCeEEEEec-------CCCceeEeeccce
Q 037939 181 NFQRDGKVTLTNQ-------VSPYVCVARKHGH 206 (309)
Q Consensus 181 ~F~~~G~~~~~~~-------~~~nvC~~~~~GH 206 (309)
..+.||+.+.+.. ...+.|.....|.
T Consensus 234 ~pn~Dgtfq~~s~l~v~~~~~~~ysC~V~H~~l 266 (348)
T 1s7q_A 234 RPAGDGTFQKWASVVVPLGKEQYYTCHVYHQGL 266 (348)
T ss_dssp EECSSSCEEEEEEEEEETTCGGGEEEEEECTTC
T ss_pred EECCCCCEEEEEEEEEcCCCCCEEEEEEEcccC
Confidence 3467888775411 2467787776663
No 22
>2kxr_A Tight junction protein ZO-1; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=35.08 E-value=33 Score=28.17 Aligned_cols=72 Identities=19% Similarity=0.262 Sum_probs=42.2
Q ss_pred ecCcccccCceeeeeEeCCcceeccceeEEEE-EEeecCCCccccccccCCC---CCCeEeceeeeeeeecCCCCcCCCC
Q 037939 71 RCGSLRRYGARVKEFHLGIGVIVQPCVERVVV-VRQNLGYNWSSIYYANYDL---SGYQLVSPVLGILAYNSVTDVNFNN 146 (309)
Q Consensus 71 RsgSLrr~G~~~~eF~IP~gv~~~P~v~Rv~l-VyqnLG~NwSs~yy~~y~l---pGY~lvsPVlGllaYdas~~~~~~n 146 (309)
|.|.|+-..... ...||||.++++--.-+-+ |.++.. + - .++ .|-+++|||+=.=
T Consensus 13 ~GG~L~~~~sGv-sL~IPpgAi~~~~~~eiyl~v~~~~~----~--~--Ppl~~~~ge~LlSpvV~cG------------ 71 (118)
T 2kxr_A 13 NGGVLSSIETGV-SIIIPQGAIPEGVEQEIYFKVCRDNS----I--L--PPLDKEKGETLLSPLVAAG------------ 71 (118)
T ss_dssp TCEEEECTTTCC-EEEECTTSSCTTCCEEEEEEEESCSS----S--C--CCSCTTTCCCBCSTTEECS------------
T ss_pred CCCEEEcCCCCe-EEEECccccCCCCeEEEEEEEccCCC----C--C--CCccCCCCcEeeCCeEEEC------------
Confidence 445554432111 3789999999986544433 444433 1 1 245 4789999998421
Q ss_pred ceEEEEeeCCCceEEEcCCC
Q 037939 147 RFELQILANGKPITIDFRNT 166 (309)
Q Consensus 147 ~~el~i~a~~~PI~V~F~~~ 166 (309)
+.-+.+ .+|+.++|++-
T Consensus 72 P~G~~F---~~PViL~iPHc 88 (118)
T 2kxr_A 72 PHGLKF---LKPVELRLPHC 88 (118)
T ss_dssp SSCCEE---EEEEEEEECCC
T ss_pred CCCCcC---cCCEEEEcCCC
Confidence 112333 35999998865
No 23
>2kxs_A Tight junction protein ZO-1, linker, peptide of M enriched ZO-associated protein; beta-barrel, protein binding; NMR {Homo sapiens}
Probab=33.16 E-value=48 Score=28.28 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=40.3
Q ss_pred eeEeCCcceeccceeEEEEEEeecCCCccccccccCCC---CCCeEeceeeeeeeecCCCCcCCCCceEEEEeeCCCceE
Q 037939 84 EFHLGIGVIVQPCVERVVVVRQNLGYNWSSIYYANYDL---SGYQLVSPVLGILAYNSVTDVNFNNRFELQILANGKPIT 160 (309)
Q Consensus 84 eF~IP~gv~~~P~v~Rv~lVyqnLG~NwSs~yy~~y~l---pGY~lvsPVlGllaYdas~~~~~~n~~el~i~a~~~PI~ 160 (309)
...||||.++++--..|-+...+=. + + - .++ +|-+++|||+=.= +.-+.+ .+|+.
T Consensus 39 sL~IPpgAI~~g~~~eIyl~v~~~~-~--~-~---Ppl~~~~getLlSPvV~CG------------P~G~~F---~kPVi 96 (146)
T 2kxs_A 39 SIIIPQGAIPEGVEQEIYFKVCRDN-S--I-L---PPLDKEKGETLLSPLVMCG------------PHGLKF---LKPVE 96 (146)
T ss_dssp EEEECTTSSCSSCCEEEEEEEECTT-S--S-C---CCSCTTTTCBCCSCCEEES------------SSSEEE---EEEEE
T ss_pred EEEECccccCCCCeEEEEEEEecCC-C--C-C---CCcccCCCcEeeCceEEEC------------CCCCcC---cCCEE
Confidence 4889999999988777776555422 1 1 1 244 4799999998421 122444 46998
Q ss_pred EEcCCC
Q 037939 161 IDFRNT 166 (309)
Q Consensus 161 V~F~~~ 166 (309)
++|++-
T Consensus 97 L~iPHc 102 (146)
T 2kxs_A 97 LRLPHC 102 (146)
T ss_dssp EEECCC
T ss_pred EEcCcC
Confidence 888864
No 24
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=28.93 E-value=17 Score=24.82 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHH
Q 037939 245 FLLGLLLVAMFVKVKKKARME 265 (309)
Q Consensus 245 vlLgll~v~~~vr~~rkkr~~ 265 (309)
+++.+.++..+++|+||-|-|
T Consensus 19 vi~iisLIiLi~~w~qKPrYe 39 (39)
T 2l6w_A 19 VLTIISLIILIMLWQKKPRYE 39 (39)
Confidence 333333444557999987743
No 25
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=23.08 E-value=36 Score=22.53 Aligned_cols=15 Identities=20% Similarity=0.538 Sum_probs=11.7
Q ss_pred HHHHHHHHHhccccc
Q 037939 261 KARMEELERRAYEEE 275 (309)
Q Consensus 261 kkr~~eMEr~A~~gE 275 (309)
||||+.|+-.+|.-|
T Consensus 10 KkKiq~lq~q~d~ae 24 (37)
T 3azd_A 10 RRKIRSLQEQNYHLE 24 (37)
T ss_dssp HHHHHHHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHH
Confidence 588999998887643
No 26
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=22.87 E-value=11 Score=24.74 Aligned_cols=10 Identities=20% Similarity=0.318 Sum_probs=5.8
Q ss_pred EeecchhHHH
Q 037939 233 AVGTTVGAAV 242 (309)
Q Consensus 233 ivg~vvGg~~ 242 (309)
|++++++|++
T Consensus 15 I~~~vv~Gv~ 24 (41)
T 2k9y_A 15 VIGGVAVGVV 24 (41)
T ss_dssp HHHHHHHHHH
T ss_pred EEeehhHHHH
Confidence 5666666544
No 27
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=21.33 E-value=9.5 Score=25.48 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=7.3
Q ss_pred cchhHHHHHHHHHHHH
Q 037939 236 TTVGAAVGAFLLGLLL 251 (309)
Q Consensus 236 ~vvGg~~glvlLgll~ 251 (309)
+++| ++.++++++.+
T Consensus 13 gVvg-lll~vii~l~~ 27 (35)
T 1iij_A 13 TVVG-VLLFLILVVVV 27 (35)
T ss_dssp HHHH-HHHHHHHTTTT
T ss_pred HHHH-HHHHHHHHHHh
Confidence 4455 55555555433
Done!