Query 037939
Match_columns 309
No_of_seqs 68 out of 70
Neff 4.2
Searched_HMMs 13730
Date Mon Mar 25 09:38:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037939.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037939hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ltqa1 c.108.1.9 (A:153-301) 38.0 6.3 0.00046 28.8 1.7 16 175-190 5-20 (149)
2 d2oara1 f.16.1.1 (A:10-118) Ga 18.5 53 0.0039 24.5 3.9 24 234-257 60-83 (109)
3 d2awna1 b.40.6.3 (A:236-370) M 15.7 40 0.0029 24.1 2.5 23 155-188 104-126 (135)
4 d1emsa1 d.13.1.1 (A:281-440) N 15.2 69 0.005 24.7 4.0 45 73-130 12-57 (160)
5 d1pw4a_ f.38.1.1 (A:) Glycerol 15.1 54 0.0039 26.6 3.4 13 257-269 431-443 (447)
6 d1e50b_ b.54.1.1 (B:) Core bin 14.7 1E+02 0.0075 24.0 4.8 56 147-202 51-109 (134)
7 d2pc6a2 d.58.18.6 (A:1-77) Ace 13.9 26 0.0019 24.8 0.9 32 72-105 20-51 (77)
8 d2hsza1 c.108.1.6 (A:1-224) Ph 12.4 34 0.0025 25.5 1.3 15 174-188 1-15 (224)
9 d1o91a_ b.22.1.1 (A:) Collagen 11.6 1.7E+02 0.012 20.8 5.2 78 104-190 26-103 (131)
10 d2bcgg1 c.3.1.3 (G:5-301) Guan 10.1 71 0.0052 22.7 2.4 33 232-274 9-41 (297)
No 1
>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=37.96 E-value=6.3 Score=28.82 Aligned_cols=16 Identities=31% Similarity=0.385 Sum_probs=13.8
Q ss_pred CcceeEEEccCCeEEE
Q 037939 175 IKPFCANFQRDGKVTL 190 (309)
Q Consensus 175 ~~~~Cv~F~~~G~~~~ 190 (309)
++||||-||.||+..-
T Consensus 5 ~kpk~vifDiDgTL~~ 20 (149)
T d1ltqa1 5 GKPKAVIFDVDGTLAK 20 (149)
T ss_dssp TSCEEEEEETBTTTBC
T ss_pred CCCcEEEEEcCCCcEe
Confidence 5889999999999753
No 2
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=18.48 E-value=53 Score=24.55 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=15.0
Q ss_pred eecchhHHHHHHHHHHHHHHhhHH
Q 037939 234 VGTTVGAAVGAFLLGLLLVAMFVK 257 (309)
Q Consensus 234 vg~vvGg~~glvlLgll~v~~~vr 257 (309)
.|.++..++-.++.++.+.++++|
T Consensus 60 ~G~fi~a~InFlIiA~vv~F~vvk 83 (109)
T d2oara1 60 LNVLLSAAINFFLIAFAVYFLVVL 83 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777776667777655455444
No 3
>d2awna1 b.40.6.3 (A:236-370) Maltose transport protein MalK, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=15.72 E-value=40 Score=24.07 Aligned_cols=23 Identities=26% Similarity=0.548 Sum_probs=18.2
Q ss_pred CCCceEEEcCCCccccCCCCCcceeEEEccCCeE
Q 037939 155 NGKPITIDFRNTTRVTNISGIKPFCANFQRDGKV 188 (309)
Q Consensus 155 ~~~PI~V~F~~~~~~~~~~~~~~~Cv~F~~~G~~ 188 (309)
-|+.|.|.|. ..+|.-||.+|+.
T Consensus 104 ~G~~v~l~~~-----------~~~~~lFd~~G~~ 126 (135)
T d2awna1 104 EGATFAIGLP-----------PERCHLFREDGTA 126 (135)
T ss_dssp TTCEEEEECC-----------GGGCEEECTTSBB
T ss_pred CCCEEEEEEC-----------hhhEEEECCCCCE
Confidence 4788888886 3389999999984
No 4
>d1emsa1 d.13.1.1 (A:281-440) NIT-FHIT fusion protein, C-terminal domain {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=15.24 E-value=69 Score=24.68 Aligned_cols=45 Identities=20% Similarity=0.236 Sum_probs=27.5
Q ss_pred CcccccCceeeeeEeCCcceeccceeEEEEEEeecCCCccccccccCCC-CCCeEecee
Q 037939 73 GSLRRYGARVKEFHLGIGVIVQPCVERVVVVRQNLGYNWSSIYYANYDL-SGYQLVSPV 130 (309)
Q Consensus 73 gSLrr~G~~~~eF~IP~gv~~~P~v~Rv~lVyqnLG~NwSs~yy~~y~l-pGY~lvsPV 130 (309)
.|-|..|.+|..+.||.-- ++|+| +-+=.+.+-+|+ ||+.||.|-
T Consensus 12 ~~~~~~~~~~~~~eiP~~~----------ii~ed---e~~~af~Di~P~~pgH~LVIPK 57 (160)
T d1emsa1 12 KSSETGGLKFARFNIPADH----------IFYST---PHSFVFVNLKPVTDGHVLVSPK 57 (160)
T ss_dssp CCCCSSCCEETTEECCGGG----------EEEEC---SSEEEEECSSCSSTTCEEEEES
T ss_pred cccccCCceEcCCcCCcce----------EEEeC---CCEEEEECCCCCCCCeEEEEEe
Confidence 4557788899999999752 34443 111112222244 899999984
No 5
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=15.12 E-value=54 Score=26.55 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 037939 257 KVKKKARMEELER 269 (309)
Q Consensus 257 r~~rkkr~~eMEr 269 (309)
..++|||.+|+.+
T Consensus 431 ~~~~~~r~~~~~~ 443 (447)
T d1pw4a_ 431 MIGEKRRHEQLLQ 443 (447)
T ss_dssp HHHHHHHHHGGGG
T ss_pred HHhccccHHHHHH
Confidence 4455555555443
No 6
>d1e50b_ b.54.1.1 (B:) Core binding factor beta, CBF {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.71 E-value=1e+02 Score=24.04 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=36.7
Q ss_pred ceEEEEeeCCCceEEEcCCCccccCCCC-CcceeEEEcc-CCeEEEEe-cCCCceeEee
Q 037939 147 RFELQILANGKPITIDFRNTTRVTNISG-IKPFCANFQR-DGKVTLTN-QVSPYVCVAR 202 (309)
Q Consensus 147 ~~el~i~a~~~PI~V~F~~~~~~~~~~~-~~~~Cv~F~~-~G~~~~~~-~~~~nvC~~~ 202 (309)
-.+|.+.++|..+.+.|........+.- ..-.++.||. .|+|+++- ..-..||.-.
T Consensus 51 ~~eiaFvatGtNl~L~f~p~~~~~~~~~~~~~~~~dFdke~Gkvhl~s~fImNGVCV~~ 109 (134)
T d1e50b_ 51 RSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIW 109 (134)
T ss_dssp EEEEEETTTTBCCEEECSCTTC----CCCCCTTTEESSSSTTEEEEEEEEEETTEEEEE
T ss_pred cceEEEEeeccceeEEeccCCCCCcccccCCccccccccccCeeeeecceeEcceEEEE
Confidence 4688999999999999954332211111 1335799998 79999874 4557788643
No 7
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}
Probab=13.92 E-value=26 Score=24.82 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=26.3
Q ss_pred cCcccccCceeeeeEeCCcceeccceeEEEEEEe
Q 037939 72 CGSLRRYGARVKEFHLGIGVIVQPCVERVVVVRQ 105 (309)
Q Consensus 72 sgSLrr~G~~~~eF~IP~gv~~~P~v~Rv~lVyq 105 (309)
+|-++|||.|...+...| ...|-+-|+.+|-+
T Consensus 20 s~lF~rRg~NI~Sltv~~--te~~~iSRmtivv~ 51 (77)
T d2pc6a2 20 AGLFSARGYNIESLSVAP--TEDPTLSRMTLVTN 51 (77)
T ss_dssp HHHHHHHTCCCCEEEEEE--CSSTTEEEEEEEEE
T ss_pred HHHHhccCcceEEEEEec--cCCCCeEEEEEEEE
Confidence 467899999999998876 55788999998864
No 8
>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}
Probab=12.39 E-value=34 Score=25.51 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=12.3
Q ss_pred CCcceeEEEccCCeE
Q 037939 174 GIKPFCANFQRDGKV 188 (309)
Q Consensus 174 ~~~~~Cv~F~~~G~~ 188 (309)
|+.-|++.||.||+.
T Consensus 1 M~~~k~iiFD~DGTL 15 (224)
T d2hsza1 1 MTQFKLIGFDLDGTL 15 (224)
T ss_dssp CSSCSEEEECSBTTT
T ss_pred CCCCCEEEEeCCCCc
Confidence 346699999999985
No 9
>d1o91a_ b.22.1.1 (A:) Collagen NC1 trimerisation domain {Mouse (Mus musculus), isoform VIII [TaxId: 10090]}
Probab=11.64 E-value=1.7e+02 Score=20.84 Aligned_cols=78 Identities=12% Similarity=0.063 Sum_probs=38.4
Q ss_pred EeecCCCccccccccCCCCCCeEeceeeeeeeecCCCCcCCCCceEEEEeeCCCceEEEcCCCccccCCCCCcceeEEEc
Q 037939 104 RQNLGYNWSSIYYANYDLSGYQLVSPVLGILAYNSVTDVNFNNRFELQILANGKPITIDFRNTTRVTNISGIKPFCANFQ 183 (309)
Q Consensus 104 yqnLG~NwSs~yy~~y~lpGY~lvsPVlGllaYdas~~~~~~n~~el~i~a~~~PI~V~F~~~~~~~~~~~~~~~Cv~F~ 183 (309)
.-|-|++ | +..-+++.+||-|+=-+.++- ....+...+.+...+..+..-+.+-........+.--++.++
T Consensus 26 ~~N~g~~----y----ntstg~FTaPvaG~Y~f~~~~-~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~s~s~i~~L~ 96 (131)
T d1o91a_ 26 LYNGRQN----Y----NPQTGIFTCEVPGVYYFAYHV-HCKGGNVWVALFKNNEPMMYTYDEYKKGFLDQASGSAVLLLR 96 (131)
T ss_dssp EEEETTC----E----ETTTTEEECCSCEEEEEEEEE-EEEEEEEEEEEEETTEEEEEEEECCBTTBCEEEEEEEEEEEC
T ss_pred EECCCCC----e----eCCCCEEEcccceEEEEEEEE-EccCCceEEEEEECCcceeeeecCCCCCcCccChheEEEEcC
Confidence 3677843 3 455677778887765554442 111222345566666666555543321111111123455555
Q ss_pred cCCeEEE
Q 037939 184 RDGKVTL 190 (309)
Q Consensus 184 ~~G~~~~ 190 (309)
++-.|.+
T Consensus 97 agD~V~v 103 (131)
T d1o91a_ 97 PGDQVFL 103 (131)
T ss_dssp TTCEEEE
T ss_pred CCCEEEE
Confidence 5555554
No 10
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.07 E-value=71 Score=22.73 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=17.3
Q ss_pred EEeecchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccc
Q 037939 232 LAVGTTVGAAVGAFLLGLLLVAMFVKVKKKARMEELERRAYEE 274 (309)
Q Consensus 232 ~ivg~vvGg~~glvlLgll~v~~~vr~~rkkr~~eMEr~A~~g 274 (309)
+|||+.++|..++..|+ |+.+|.-..|++..-|
T Consensus 9 iViGaG~~Gl~~A~~La----------~~G~~V~vlE~~~~~G 41 (297)
T d2bcgg1 9 IVLGTGITECILSGLLS----------VDGKKVLHIDKQDHYG 41 (297)
T ss_dssp EEECCSHHHHHHHHHHH----------HTTCCEEEECSSSSSC
T ss_pred EEECcCHHHHHHHHHHH----------HCCCCEEEEcCCCCCC
Confidence 57777676643332221 3334555566665544
Done!