BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037941
(308 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 81 EGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKL 140
+G+ +LQ L L SLP+++ ++ + LK RNS + L I L +L+
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLK------IRNSPLSALGPAIHHLPKLEE 233
Query: 141 LDLSTCSKLKSIRP 154
LDL C+ L++ P
Sbjct: 234 LDLRGCTALRNYPP 247
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 109 VGVLKKLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELY 167
+G + L I + ++ I +P+E+G L L +LDLS+ +KL P +S L L E+
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEID 707
Query: 168 MGNS 171
+ N+
Sbjct: 708 LSNN 711
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 31.2 bits (69), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 109 VGVLKKLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELY 167
+G + L I + ++ I +P+E+G L L +LDLS+ +KL P +S L L E+
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEID 710
Query: 168 MGNS 171
+ N+
Sbjct: 711 LSNN 714
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 85/214 (39%), Gaps = 61/214 (28%)
Query: 80 FEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE--------- 130
F G+PSL L L ++P+ + L KL RN+ IE +P
Sbjct: 79 FNGLPSLNTLELFDNRLTTVPTQAFEY-----LSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 131 ---EIGQLTRL--------------KLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFT 173
++G+L RL + L+L C+ LK I PN+ + L RLEEL
Sbjct: 134 RRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCN-LKDI-PNLTA-LVRLEEL------- 183
Query: 174 HWEVEGQNNASLAELNQLSRLTTLEML-ILDAQVMPRELFSLGLERNKIFLGDVWSWTGK 232
E+ G N L LT+L L ++ AQV +ERN
Sbjct: 184 --ELSG-NRLDLIRPGSFQGLTSLRKLWLMHAQVA-------TIERNAF---------DD 224
Query: 233 YETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLD 266
++ L L +N M L H + L R E +HL+
Sbjct: 225 LKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLN 258
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 84/214 (39%), Gaps = 61/214 (28%)
Query: 80 FEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE--------- 130
F G+PSL L L ++P+ L KL RN+ IE +P
Sbjct: 79 FNGLPSLNTLELFDNRLTTVPT-----QAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 131 ---EIGQLTRL--------------KLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFT 173
++G+L RL + L+L C+ LK I PN+ + L RLEEL
Sbjct: 134 RRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCN-LKDI-PNLTA-LVRLEEL------- 183
Query: 174 HWEVEGQNNASLAELNQLSRLTTLEML-ILDAQVMPRELFSLGLERNKIFLGDVWSWTGK 232
E+ G N L LT+L L ++ AQV +ERN
Sbjct: 184 --ELSG-NRLDLIRPGSFQGLTSLRKLWLMHAQVA-------TIERNAF---------DD 224
Query: 233 YETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLD 266
++ L L +N M L H + L R E +HL+
Sbjct: 225 LKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLN 258
>pdb|3Q3U|A Chain A, Trametes Cervina Lignin Peroxidase
Length = 338
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 86 LQVLSLNGFHFPSLPSTLGDVATV 109
+QV NG FPSLP++ G V TV
Sbjct: 311 VQVACTNGMPFPSLPTSPGPVQTV 334
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 15/92 (16%)
Query: 80 FEGVPSLQVLSLNGFHFP--SLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTR 137
F+G+P+LQ L+L G HFP ++ T + T+G L+ LV+ S I+Q L
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKT-NSLQTLGRLEILVLSFCDLSSIDQ--HAFTSLKM 501
Query: 138 LKLLDLS----------TCSKLKSIRPNVISN 159
+ +DLS S LK I N+ SN
Sbjct: 502 MNHVDLSHNRLTSSSIEALSHLKGIYLNLASN 533
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 80 FEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRL 138
F G+ SL+ L+L + S+P+ + L L++ R+ +I + + +L RL
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPT-----EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRL 202
Query: 139 KLLDLSTCSKLKSIRPNVISNL 160
K+L++S L ++ PN + L
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGL 224
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 28.1 bits (61), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 12/49 (24%)
Query: 155 NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILD 203
N + +LP+LE LY+GN+ + ++ LSRLT L+ L L+
Sbjct: 125 NGLVHLPQLESLYLGNN------------KITDITVLSRLTKLDTLSLE 161
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 12/49 (24%)
Query: 155 NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILD 203
N + +LP+LE LY+GN+ + ++ LSRLT L+ L L+
Sbjct: 128 NGLVHLPQLESLYLGNN------------KITDITVLSRLTKLDTLSLE 164
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 12/55 (21%)
Query: 155 NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPR 209
N + +LP+LE LY+GN+ + ++ LSRLT L+ L L+ + R
Sbjct: 126 NGLVHLPQLESLYLGNN------------KITDITVLSRLTKLDTLSLEDNQIRR 168
>pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans
pdb|3L8A|B Chain B, Crystal Structure Of Metc From Streptococcus Mutans
Length = 421
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 94 FHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIR 153
F + L + +V TVG++ F + +E+L I +L + +L +K+K +
Sbjct: 291 FQYRQLANNQHEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAKTKIKVME 350
Query: 154 P 154
P
Sbjct: 351 P 351
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 12/49 (24%)
Query: 155 NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILD 203
N + +LP+LE LY+GN+ + ++ LSRLT L+ L L+
Sbjct: 126 NGLVHLPQLESLYLGNN------------KITDITVLSRLTKLDTLSLE 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,995,033
Number of Sequences: 62578
Number of extensions: 300755
Number of successful extensions: 798
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 784
Number of HSP's gapped (non-prelim): 47
length of query: 308
length of database: 14,973,337
effective HSP length: 99
effective length of query: 209
effective length of database: 8,778,115
effective search space: 1834626035
effective search space used: 1834626035
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)