Query 037941
Match_columns 308
No_of_seqs 147 out of 1808
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 05:56:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037941.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037941hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 1.4E-22 3E-27 194.5 9.4 287 1-304 483-790 (889)
2 PLN00113 leucine-rich repeat r 99.9 1.6E-21 3.4E-26 194.0 17.4 247 35-294 91-366 (968)
3 PLN03210 Resistant to P. syrin 99.9 4.4E-21 9.6E-26 192.2 20.4 252 37-302 589-911 (1153)
4 PLN00113 leucine-rich repeat r 99.9 4.4E-21 9.5E-26 190.9 16.0 215 37-267 140-365 (968)
5 KOG4194 Membrane glycoprotein 99.8 1.5E-22 3.3E-27 178.7 0.2 248 38-294 150-426 (873)
6 KOG4194 Membrane glycoprotein 99.8 6.5E-22 1.4E-26 174.7 3.1 239 37-292 173-447 (873)
7 KOG0444 Cytoskeletal regulator 99.8 2.6E-21 5.7E-26 172.4 -1.5 249 35-303 101-381 (1255)
8 KOG0444 Cytoskeletal regulator 99.8 6.2E-21 1.3E-25 170.0 -2.8 234 24-267 41-300 (1255)
9 PLN03210 Resistant to P. syrin 99.8 5.2E-18 1.1E-22 170.2 17.4 254 34-302 555-843 (1153)
10 KOG0617 Ras suppressor protein 99.8 1.3E-20 2.8E-25 142.6 -4.1 162 34-213 30-194 (264)
11 KOG0472 Leucine-rich repeat pr 99.8 5.7E-20 1.2E-24 156.0 -1.2 259 24-295 192-539 (565)
12 PRK15387 E3 ubiquitin-protein 99.7 1.6E-16 3.5E-21 150.2 15.5 233 21-295 207-456 (788)
13 KOG0472 Leucine-rich repeat pr 99.7 7.2E-20 1.6E-24 155.4 -6.8 239 34-295 65-308 (565)
14 PRK15370 E3 ubiquitin-protein 99.7 9.7E-17 2.1E-21 152.3 12.4 237 24-295 187-426 (754)
15 PRK15370 E3 ubiquitin-protein 99.7 2.5E-16 5.4E-21 149.5 11.6 228 36-302 177-405 (754)
16 PRK15387 E3 ubiquitin-protein 99.7 1.4E-15 3E-20 143.9 13.9 230 37-302 201-439 (788)
17 KOG0617 Ras suppressor protein 99.6 8.7E-18 1.9E-22 127.4 -4.0 169 49-234 23-193 (264)
18 KOG4237 Extracellular matrix p 99.6 1.5E-17 3.2E-22 141.1 -3.1 264 21-294 52-332 (498)
19 KOG0618 Serine/threonine phosp 99.5 7.6E-16 1.6E-20 143.1 0.2 241 36-296 240-488 (1081)
20 KOG0618 Serine/threonine phosp 99.5 2E-15 4.3E-20 140.4 -0.3 244 36-302 44-327 (1081)
21 KOG4237 Extracellular matrix p 99.4 4.7E-15 1E-19 126.1 -5.0 121 21-147 73-199 (498)
22 cd00116 LRR_RI Leucine-rich re 99.4 7.3E-13 1.6E-17 115.6 6.1 245 36-294 22-317 (319)
23 cd00116 LRR_RI Leucine-rich re 99.4 8.6E-13 1.9E-17 115.2 6.5 246 42-294 3-288 (319)
24 PF14580 LRR_9: Leucine-rich r 99.3 5.6E-12 1.2E-16 98.9 6.4 140 47-200 7-148 (175)
25 KOG4658 Apoptotic ATPase [Sign 99.3 8.9E-12 1.9E-16 120.6 8.5 271 24-303 532-848 (889)
26 PF14580 LRR_9: Leucine-rich r 99.2 1.1E-11 2.4E-16 97.2 5.0 112 82-208 17-129 (175)
27 KOG3207 Beta-tubulin folding c 99.2 4.1E-12 8.9E-17 109.7 2.4 186 33-229 117-316 (505)
28 KOG0532 Leucine-rich repeat (L 99.1 2.3E-12 4.9E-17 114.6 -3.4 185 42-245 55-245 (722)
29 KOG3207 Beta-tubulin folding c 99.1 2.3E-11 5E-16 105.1 0.7 198 82-291 119-333 (505)
30 KOG0532 Leucine-rich repeat (L 99.0 1.3E-11 2.8E-16 109.9 -3.1 156 38-213 99-255 (722)
31 COG4886 Leucine-rich repeat (L 99.0 2.9E-10 6.3E-15 102.4 5.2 105 57-171 114-219 (394)
32 COG4886 Leucine-rich repeat (L 99.0 3.7E-10 8E-15 101.7 5.7 155 37-209 116-272 (394)
33 KOG1259 Nischarin, modulator o 99.0 6.1E-11 1.3E-15 98.2 -1.2 133 58-208 283-415 (490)
34 KOG1909 Ran GTPase-activating 98.9 3.9E-10 8.5E-15 95.0 2.2 181 111-295 90-309 (382)
35 KOG1259 Nischarin, modulator o 98.9 1.1E-10 2.3E-15 96.7 -1.5 126 82-225 282-410 (490)
36 PF13855 LRR_8: Leucine rich r 98.8 2.7E-09 5.8E-14 69.1 3.3 59 60-124 2-60 (61)
37 PLN03150 hypothetical protein; 98.8 1.9E-08 4.1E-13 95.4 9.0 104 86-203 420-526 (623)
38 PF13855 LRR_8: Leucine rich r 98.7 9.3E-09 2E-13 66.5 3.5 58 85-147 2-60 (61)
39 PLN03150 hypothetical protein; 98.7 4.6E-08 9.9E-13 92.8 8.5 107 60-174 419-528 (623)
40 KOG0531 Protein phosphatase 1, 98.6 4.4E-09 9.6E-14 95.2 -1.6 186 38-244 73-265 (414)
41 KOG1909 Ran GTPase-activating 98.5 3.3E-08 7.1E-13 83.6 2.1 227 34-268 27-308 (382)
42 KOG2120 SCF ubiquitin ligase, 98.5 2.9E-09 6.2E-14 88.2 -4.3 172 114-294 186-373 (419)
43 KOG0531 Protein phosphatase 1, 98.5 1.4E-08 3E-13 92.0 -0.5 128 34-174 92-221 (414)
44 KOG1859 Leucine-rich repeat pr 98.4 3.3E-09 7.2E-14 97.4 -7.3 152 35-204 107-291 (1096)
45 KOG2982 Uncharacterized conser 98.4 7.8E-08 1.7E-12 79.9 0.5 182 112-302 70-267 (418)
46 KOG2120 SCF ubiquitin ligase, 98.4 1.6E-08 3.5E-13 83.8 -3.5 174 60-244 186-373 (419)
47 PF12799 LRR_4: Leucine Rich r 98.3 5.9E-07 1.3E-11 53.5 2.4 34 114-147 2-35 (44)
48 PF12799 LRR_4: Leucine Rich r 98.3 1.5E-06 3.2E-11 51.7 4.0 41 84-130 1-41 (44)
49 KOG3665 ZYG-1-like serine/thre 98.2 4.1E-07 8.9E-12 86.5 1.7 136 59-203 122-261 (699)
50 COG5238 RNA1 Ran GTPase-activa 98.2 1.8E-06 3.9E-11 71.0 4.8 144 57-204 28-197 (388)
51 KOG4579 Leucine-rich repeat (L 98.2 1.6E-07 3.4E-12 69.3 -1.4 112 36-155 26-141 (177)
52 KOG3665 ZYG-1-like serine/thre 98.2 9.8E-07 2.1E-11 84.0 3.2 133 34-174 119-263 (699)
53 PRK15386 type III secretion pr 98.2 1.1E-05 2.3E-10 71.5 9.1 59 58-129 51-111 (426)
54 KOG4341 F-box protein containi 98.1 8.5E-08 1.8E-12 83.0 -5.7 250 37-299 138-441 (483)
55 PRK15386 type III secretion pr 98.1 2.2E-05 4.8E-10 69.5 8.8 60 83-153 51-111 (426)
56 KOG4579 Leucine-rich repeat (L 98.0 3.5E-07 7.7E-12 67.5 -3.2 118 85-215 28-146 (177)
57 KOG1859 Leucine-rich repeat pr 97.9 1.3E-07 2.9E-12 87.1 -7.4 128 36-174 163-292 (1096)
58 KOG1644 U2-associated snRNP A' 97.9 2.6E-05 5.6E-10 61.6 5.5 105 58-171 41-150 (233)
59 COG5238 RNA1 Ran GTPase-activa 97.9 1.2E-05 2.6E-10 66.3 3.6 167 34-205 27-227 (388)
60 KOG2982 Uncharacterized conser 97.8 3.2E-05 6.8E-10 64.7 5.1 62 135-203 198-260 (418)
61 KOG1644 U2-associated snRNP A' 97.8 6.3E-05 1.4E-09 59.5 6.0 108 83-202 41-150 (233)
62 KOG2123 Uncharacterized conser 97.4 1.7E-05 3.7E-10 65.7 -2.2 100 58-167 18-123 (388)
63 KOG2739 Leucine-rich acidic nu 97.2 0.00023 5E-09 58.5 2.7 86 52-147 35-127 (260)
64 KOG2739 Leucine-rich acidic nu 97.0 0.00045 9.8E-09 56.8 2.9 105 35-147 41-154 (260)
65 PF13306 LRR_5: Leucine rich r 96.9 0.004 8.7E-08 46.3 6.8 102 57-170 10-112 (129)
66 KOG2123 Uncharacterized conser 96.8 8.3E-05 1.8E-09 61.7 -2.9 76 21-96 25-100 (388)
67 PF13306 LRR_5: Leucine rich r 96.8 0.0049 1.1E-07 45.9 6.7 113 38-163 13-128 (129)
68 KOG4341 F-box protein containi 96.7 7.2E-05 1.6E-09 65.3 -4.4 231 59-299 138-387 (483)
69 PF00560 LRR_1: Leucine Rich R 96.4 0.0016 3.4E-08 32.3 1.1 18 115-132 2-19 (22)
70 KOG1947 Leucine rich repeat pr 96.4 0.00085 1.8E-08 61.9 -0.2 113 57-174 186-308 (482)
71 PF00560 LRR_1: Leucine Rich R 95.4 0.004 8.7E-08 30.8 0.0 17 86-102 2-18 (22)
72 KOG1947 Leucine rich repeat pr 95.3 0.0082 1.8E-07 55.3 1.8 14 232-245 293-306 (482)
73 PF13504 LRR_7: Leucine rich r 95.0 0.016 3.5E-07 26.6 1.4 11 115-125 3-13 (17)
74 PF13504 LRR_7: Leucine rich r 94.9 0.017 3.6E-07 26.5 1.2 16 85-100 2-17 (17)
75 KOG3864 Uncharacterized conser 93.8 0.011 2.5E-07 47.0 -1.0 41 232-273 149-191 (221)
76 KOG3864 Uncharacterized conser 92.9 0.18 3.9E-06 40.4 4.4 69 230-299 121-191 (221)
77 smart00370 LRR Leucine-rich re 92.4 0.12 2.6E-06 26.4 2.0 15 115-129 4-18 (26)
78 smart00369 LRR_TYP Leucine-ric 92.4 0.12 2.6E-06 26.4 2.0 15 115-129 4-18 (26)
79 smart00369 LRR_TYP Leucine-ric 91.9 0.13 2.8E-06 26.3 1.7 20 83-102 1-20 (26)
80 smart00370 LRR Leucine-rich re 91.9 0.13 2.8E-06 26.3 1.7 20 83-102 1-20 (26)
81 KOG0473 Leucine-rich repeat pr 89.0 0.019 4.2E-07 46.8 -4.4 83 57-147 40-122 (326)
82 smart00367 LRR_CC Leucine-rich 84.8 0.6 1.3E-05 23.8 1.2 16 283-298 1-16 (26)
83 KOG0473 Leucine-rich repeat pr 83.0 0.031 6.6E-07 45.7 -6.1 85 34-126 39-124 (326)
84 smart00364 LRR_BAC Leucine-ric 80.0 1.3 2.9E-05 22.7 1.4 17 85-101 3-19 (26)
85 smart00365 LRR_SD22 Leucine-ri 77.3 1.8 3.9E-05 22.2 1.4 14 113-126 2-15 (26)
86 PF13516 LRR_6: Leucine Rich r 75.1 1.6 3.4E-05 21.6 0.9 14 113-126 2-15 (24)
87 KOG4308 LRR-containing protein 67.6 0.043 9.2E-07 50.6 -10.4 34 39-72 89-128 (478)
88 smart00368 LRR_RI Leucine rich 61.7 7.2 0.00016 20.2 1.7 11 115-125 4-14 (28)
89 KOG3763 mRNA export factor TAP 48.4 14 0.0003 34.5 2.3 77 214-290 218-307 (585)
90 KOG3763 mRNA export factor TAP 35.3 30 0.00066 32.4 2.4 75 190-264 216-307 (585)
91 KOG4308 LRR-containing protein 32.1 1.8 3.8E-05 40.1 -6.0 163 35-204 113-302 (478)
92 TIGR00864 PCC polycystin catio 22.8 52 0.0011 37.2 1.9 32 65-97 1-32 (2740)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.87 E-value=1.4e-22 Score=194.52 Aligned_cols=287 Identities=24% Similarity=0.282 Sum_probs=213.5
Q ss_pred ChhHHHHHHHHhhh-----ccccceeecccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCC-cCC
Q 037941 1 MHDVVHDIAVSTAR-----DKHMFNIQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKL-SLV 74 (308)
Q Consensus 1 mhd~v~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~ 74 (308)
|||+|||||.++|+ +++ ..+..+.+..++|+...+...|+..+.++.+..++....+++|++|.+.+|.. ...
T Consensus 483 mHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~ 561 (889)
T KOG4658|consen 483 MHDVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLE 561 (889)
T ss_pred eeHHHHHHHHHHhccccccccc-eEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhh
Confidence 89999999999998 666 55776778888888888899999999999999988888888999999999872 447
Q ss_pred CCchhhcCCCCccEEEccCC-CCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccC
Q 037941 75 IPDLFFEGVPSLQVLSLNGF-HFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIR 153 (308)
Q Consensus 75 ~~~~~~~~l~~L~~L~l~~~-~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 153 (308)
++..+|..|+.|++||+++| .+.++|.. ++.+.+||||+++++.+.++|..++++.+|.+|++..+..+..+|
T Consensus 562 is~~ff~~m~~LrVLDLs~~~~l~~LP~~------I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~ 635 (889)
T KOG4658|consen 562 ISGEFFRSLPLLRVLDLSGNSSLSKLPSS------IGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP 635 (889)
T ss_pred cCHHHHhhCcceEEEECCCCCccCcCChH------HhhhhhhhcccccCCCccccchHHHHHHhhheecccccccccccc
Confidence 77888899999999999987 45699999 999999999999999999999999999999999999988666665
Q ss_pred cchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccch-hhccCCcee----EeeccC---
Q 037941 154 PNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRE-LFSLGLERN----KIFLGD--- 225 (308)
Q Consensus 154 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~-~~~~~L~~l----~i~~~~--- 225 (308)
. ....+.+|++|.+...... .......++..+.+|+.+.+..... .+-.. .....|.++ .+....
T Consensus 636 ~-i~~~L~~Lr~L~l~~s~~~-----~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~~~~~~~~~ 708 (889)
T KOG4658|consen 636 G-ILLELQSLRVLRLPRSALS-----NDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLSIEGCSKRT 708 (889)
T ss_pred c-hhhhcccccEEEeeccccc-----cchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhhhcccccce
Confidence 4 3667999999999876522 2233456777888888888755443 11111 111222221 111111
Q ss_pred cccccCCCCcCceEEEeecCchhh-----hhhHHH-HhcccceeecCCccchhhhhhccCCCCCCcccEEeccccccccc
Q 037941 226 VWSWTGKYETSRTLKLKLDNRMYL-----EHGIKM-LLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILY 299 (308)
Q Consensus 226 ~~~~~~~~~~L~~L~L~~~~~~~~-----~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 299 (308)
.......+++|+.|.+..+..... ...... .|+++..+.+.+|...+...|.. -.|+|+.|.+..|+.++.
T Consensus 709 ~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~---f~~~L~~l~l~~~~~~e~ 785 (889)
T KOG4658|consen 709 LISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLL---FAPHLTSLSLVSCRLLED 785 (889)
T ss_pred eecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhh---ccCcccEEEEeccccccc
Confidence 122355677888888777654321 111111 26788888888888888766542 247899999999988888
Q ss_pred cccCc
Q 037941 300 IVSSV 304 (308)
Q Consensus 300 i~~~~ 304 (308)
+++..
T Consensus 786 ~i~~~ 790 (889)
T KOG4658|consen 786 IIPKL 790 (889)
T ss_pred CCCHH
Confidence 87643
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=1.6e-21 Score=194.05 Aligned_cols=247 Identities=17% Similarity=0.222 Sum_probs=121.4
Q ss_pred cCCCCeeEEeecCCCC-CCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCccccc
Q 037941 35 MQKDPIAISHPCRDIQ-ELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVG 110 (308)
Q Consensus 35 ~~~~l~~L~l~~~~~~-~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~ 110 (308)
..++++.|++++|.+. .+|... .+++|++|++++|.+++.+|. ..+++|++|++++|.+. .+|.. ++
T Consensus 91 ~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~------~~ 161 (968)
T PLN00113 91 RLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPND------IG 161 (968)
T ss_pred CCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChH------Hh
Confidence 4566777777777663 455543 566666666666665544443 23455555555555554 34444 44
Q ss_pred ccccccEEeecCCcCc-ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccC----------
Q 037941 111 VLKKLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEG---------- 179 (308)
Q Consensus 111 ~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---------- 179 (308)
.+++|++|++++|.+. .+|..++++++|++|++++|.....+|.. ++++++|+.|++++|.+.+..+.
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 240 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccCCcCChhHhcCCCCCE
Confidence 4455555555554443 44444444444555554444433333333 44444444444444443321110
Q ss_pred -------CcccchhhhhcCCCCCEEEeeeccCc-cccchhhc-cCCceeEeeccC----cccccCCCCcCceEEEeecCc
Q 037941 180 -------QNNASLAELNQLSRLTTLEMLILDAQ-VMPRELFS-LGLERNKIFLGD----VWSWTGKYETSRTLKLKLDNR 246 (308)
Q Consensus 180 -------~~~~~~~~l~~l~~L~~L~l~~~~~~-~~p~~~~~-~~L~~l~i~~~~----~~~~~~~~~~L~~L~L~~~~~ 246 (308)
-....+..++.+++|+.|++++|.+. .+|..+.. .+|+.|++..+. .+.++..+++|+.|+++.|..
T Consensus 241 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~ 320 (968)
T PLN00113 241 LDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320 (968)
T ss_pred EECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc
Confidence 00012244555566666666655543 34444433 556666554433 233445566666666666544
Q ss_pred hhhh-hhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccc
Q 037941 247 MYLE-HGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNA 294 (308)
Q Consensus 247 ~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 294 (308)
.... ..+.. +++|+.|+++++.....++..+ +.+++|+.|++++|
T Consensus 321 ~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l--~~~~~L~~L~Ls~n 366 (968)
T PLN00113 321 TGKIPVALTS-LPRLQVLQLWSNKFSGEIPKNL--GKHNNLTVLDLSTN 366 (968)
T ss_pred CCcCChhHhc-CCCCCEEECcCCCCcCcCChHH--hCCCCCcEEECCCC
Confidence 3322 22222 3666777766643322222211 34556666666655
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.87 E-value=4.4e-21 Score=192.17 Aligned_cols=252 Identities=16% Similarity=0.177 Sum_probs=166.3
Q ss_pred CCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCC-CCCCCCCCCCcccccccccc
Q 037941 37 KDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFH-FPSLPSTLGDVATVGVLKKL 115 (308)
Q Consensus 37 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~~~~l~~l~~L 115 (308)
.++|.|.+.++.+..+|..+...+|+.|++.++.+. .++..+ ..+++|++|+++++. +..+|. ++.+++|
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-------ls~l~~L 659 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIPD-------LSMATNL 659 (1153)
T ss_pred cccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCCc-------cccCCcc
Confidence 457777777777777887777788888888888765 445444 578888888888764 456664 6677888
Q ss_pred cEEeecCCc-CcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcc---------------------
Q 037941 116 VIFSFRNSH-IEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFT--------------------- 173 (308)
Q Consensus 116 ~~L~l~~~~-i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--------------------- 173 (308)
++|++.+|. +..+|..++.+++|+.|++++|..++.+|.. + ++++|+.|++++|..
T Consensus 660 e~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i 737 (1153)
T PLN03210 660 ETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAI 737 (1153)
T ss_pred cEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcc
Confidence 888888765 5577877888888888888887767777764 2 566666666665531
Q ss_pred cccccC----------------------------------------------CcccchhhhhcCCCCCEEEeeecc-Ccc
Q 037941 174 HWEVEG----------------------------------------------QNNASLAELNQLSRLTTLEMLILD-AQV 206 (308)
Q Consensus 174 ~~~~~~----------------------------------------------~~~~~~~~l~~l~~L~~L~l~~~~-~~~ 206 (308)
...+.. .....+..++++++|+.|++++|. +..
T Consensus 738 ~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~ 817 (1153)
T PLN03210 738 EEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLET 817 (1153)
T ss_pred ccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCe
Confidence 111100 001123344455556666665542 455
Q ss_pred ccchhhccCCceeEeeccC-cccccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCc
Q 037941 207 MPRELFSLGLERNKIFLGD-VWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPR 285 (308)
Q Consensus 207 ~p~~~~~~~L~~l~i~~~~-~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 285 (308)
+|.....++|+.|++..+. ...++....+++.|+|+.|.....+..+.. +++|++|++.+|+.++.++.. ...+++
T Consensus 818 LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~-l~~L~~L~L~~C~~L~~l~~~--~~~L~~ 894 (1153)
T PLN03210 818 LPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEK-FSNLSFLDMNGCNNLQRVSLN--ISKLKH 894 (1153)
T ss_pred eCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhc-CCCCCEEECCCCCCcCccCcc--cccccC
Confidence 5555444556666554432 222333345777777777666555555555 499999999999999986543 367889
Q ss_pred ccEEecccccccccccc
Q 037941 286 LKHLLVQNASEILYIVS 302 (308)
Q Consensus 286 L~~L~l~~c~~l~~i~~ 302 (308)
|+.+.+.+|+.++.++.
T Consensus 895 L~~L~l~~C~~L~~~~l 911 (1153)
T PLN03210 895 LETVDFSDCGALTEASW 911 (1153)
T ss_pred CCeeecCCCcccccccC
Confidence 99999999999987654
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=4.4e-21 Score=190.87 Aligned_cols=215 Identities=20% Similarity=0.230 Sum_probs=117.2
Q ss_pred CCCeeEEeecCCCC-CCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCcccccccc
Q 037941 37 KDPIAISHPCRDIQ-ELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVLK 113 (308)
Q Consensus 37 ~~l~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~~l~ 113 (308)
+++++|++++|.+. .+|..+ .+++|++|++++|.+.+.+|..+ .++++|++|++++|.+. .+|.. +++++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~------l~~l~ 212 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRE------LGQMK 212 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChH------HcCcC
Confidence 33444444444442 233333 45555555555555444444443 34555555555555544 34444 55555
Q ss_pred cccEEeecCCcCc-ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCC
Q 037941 114 KLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS 192 (308)
Q Consensus 114 ~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~ 192 (308)
+|++|++++|.+. .+|..++.+++|++|++++|.....+|.. ++++++|+.|++++|.+.+. .+..+..++
T Consensus 213 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~-------~p~~l~~l~ 284 (968)
T PLN00113 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGP-------IPPSIFSLQ 284 (968)
T ss_pred CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeecc-------CchhHhhcc
Confidence 5666666555555 55555566666666666665533344443 55566666666666655422 235667778
Q ss_pred CCCEEEeeeccCc-cccchhhc-cCCceeEeeccCc----ccccCCCCcCceEEEeecCchhh-hhhHHHHhcccceeec
Q 037941 193 RLTTLEMLILDAQ-VMPRELFS-LGLERNKIFLGDV----WSWTGKYETSRTLKLKLDNRMYL-EHGIKMLLRRTEDLHL 265 (308)
Q Consensus 193 ~L~~L~l~~~~~~-~~p~~~~~-~~L~~l~i~~~~~----~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l 265 (308)
+|+.|++++|.+. .+|..+.. .+|+.|++..+.+ +.+...+++|+.|+|+.|..... +..+.. +++|+.|++
T Consensus 285 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-~~~L~~L~L 363 (968)
T PLN00113 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDL 363 (968)
T ss_pred CcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC-CCCCcEEEC
Confidence 8888888888754 45555444 6777777655432 33455667777777776654422 222222 356666666
Q ss_pred CC
Q 037941 266 DK 267 (308)
Q Consensus 266 ~~ 267 (308)
++
T Consensus 364 s~ 365 (968)
T PLN00113 364 ST 365 (968)
T ss_pred CC
Confidence 65
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=1.5e-22 Score=178.67 Aligned_cols=248 Identities=17% Similarity=0.156 Sum_probs=113.1
Q ss_pred CCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941 38 DPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL 115 (308)
Q Consensus 38 ~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L 115 (308)
.+|.|||+.|.+.++|... .-.+++.|++++|.++. +....|..+.+|-.|.|+.|+++.+|... |+++++|
T Consensus 150 alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNrittLp~r~-----Fk~L~~L 223 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNRITTLPQRS-----FKRLPKL 223 (873)
T ss_pred hhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccc-cccccccccchheeeecccCcccccCHHH-----hhhcchh
Confidence 3444444444444443322 33455555555555552 22222345555555555555555555543 5555555
Q ss_pred cEEeecCCcCccc-chhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCc-------------
Q 037941 116 VIFSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQN------------- 181 (308)
Q Consensus 116 ~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~------------- 181 (308)
+.|++..|.|... ...+..+++|+.|.+..|. +..+..+.|..+.++++|++..|++.....|+.
T Consensus 224 ~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhhccccceeeehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 5555555555433 2234444444444444444 444444444445555555555554442111100
Q ss_pred ----ccchhhhhcCCCCCEEEeeeccCccccchhhc--cCCceeEeeccCcccc----cCCCCcCceEEEeecCch---h
Q 037941 182 ----NASLAELNQLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFLGDVWSW----TGKYETSRTLKLKLDNRM---Y 248 (308)
Q Consensus 182 ----~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~~----~~~~~~L~~L~L~~~~~~---~ 248 (308)
.-.+......++|+.|+++.|+++++++..+. ..|+.|.++.+.+... +..+.+|+.|+|+.|... .
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE 382 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE 382 (873)
T ss_pred hhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence 00012333444555555555555555544433 4445554444443221 334455555555554321 1
Q ss_pred hhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccc
Q 037941 249 LEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNA 294 (308)
Q Consensus 249 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 294 (308)
...+...-+++|+.|.+.+ |+++.++- -..++++.|++|++.++
T Consensus 383 Daa~~f~gl~~LrkL~l~g-Nqlk~I~k-rAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 383 DAAVAFNGLPSLRKLRLTG-NQLKSIPK-RAFSGLEALEHLDLGDN 426 (873)
T ss_pred cchhhhccchhhhheeecC-ceeeecch-hhhccCcccceecCCCC
Confidence 1111111135556666655 55555433 11355666666666555
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=6.5e-22 Score=174.70 Aligned_cols=239 Identities=19% Similarity=0.191 Sum_probs=163.9
Q ss_pred CCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCC--------------------
Q 037941 37 KDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGF-------------------- 94 (308)
Q Consensus 37 ~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-------------------- 94 (308)
.++.+|+|.+|.++.+.... .+.+|.+|-++.|.++ .+|...|..+++|+.|+|..|
T Consensus 173 ~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 173 VNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence 35556666666655444333 4555555555555554 444444444555555555554
Q ss_pred ----CCCCCCCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEcc
Q 037941 95 ----HFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMG 169 (308)
Q Consensus 95 ----~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 169 (308)
.+.++-++. |..+.++++|++..|.++..- ..+..++.|++|++++|. +.++....+..+++|++|+++
T Consensus 252 lqrN~I~kL~DG~-----Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs 325 (873)
T KOG4194|consen 252 LQRNDISKLDDGA-----FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLS 325 (873)
T ss_pred hhhcCcccccCcc-----eeeecccceeecccchhhhhhcccccccchhhhhccchhh-hheeecchhhhcccceeEecc
Confidence 444444443 666777788888888777554 457788888888888888 666665557778889999999
Q ss_pred CCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhc--cCCceeEeeccCccc-------ccCCCCcCceEE
Q 037941 170 NSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFLGDVWS-------WTGKYETSRTLK 240 (308)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~-------~~~~~~~L~~L~ 240 (308)
.|++....+ ..|.-+..|++|.++.|.++.+.+..+. .+|+.|++..+++.. .+..++.|+.|.
T Consensus 326 ~N~i~~l~~-------~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~ 398 (873)
T KOG4194|consen 326 SNRITRLDE-------GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLR 398 (873)
T ss_pred ccccccCCh-------hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhee
Confidence 888884443 5777888999999999999999888776 899999987776422 245689999999
Q ss_pred EeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecc
Q 037941 241 LKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQ 292 (308)
Q Consensus 241 L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 292 (308)
|.+|+..........-+++|+.|++.+ |.+.++-+.. .+.+ +|++|.+.
T Consensus 399 l~gNqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nA-Fe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 399 LTGNQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNA-FEPM-ELKELVMN 447 (873)
T ss_pred ecCceeeecchhhhccCcccceecCCC-Ccceeecccc-cccc-hhhhhhhc
Confidence 999987666544444459999999988 6666654322 1333 67777654
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.80 E-value=2.6e-21 Score=172.41 Aligned_cols=249 Identities=18% Similarity=0.257 Sum_probs=154.4
Q ss_pred cCCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccc
Q 037941 35 MQKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLK 113 (308)
Q Consensus 35 ~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~ 113 (308)
.++.++.|+++.|.+.++|... .-++.-+|++++|++. .+|...|-++..|-+|||++|++..+|+. +..+.
T Consensus 101 ~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ------~RRL~ 173 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQ------IRRLS 173 (1255)
T ss_pred ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHH------HHHHh
Confidence 4778889999999998888888 8889999999999887 78888888899999999999999999998 78888
Q ss_pred cccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCC-CCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcC
Q 037941 114 KLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSK-LKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQL 191 (308)
Q Consensus 114 ~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l 191 (308)
+|++|++++|.+.... ..+-.|++|+.|.+++.+. +..+|.. +..+.||+.+|++.|.+. ..++.+..+
T Consensus 174 ~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pts-ld~l~NL~dvDlS~N~Lp--------~vPecly~l 244 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTS-LDDLHNLRDVDLSENNLP--------IVPECLYKL 244 (1255)
T ss_pred hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCc-hhhhhhhhhccccccCCC--------cchHHHhhh
Confidence 8888888877544211 1133344444444444321 2234433 444455555555554443 233444444
Q ss_pred CCCCEEE-----------------------eeeccCccccchhhc-cCCceeEeeccC-----cccccCCCCcCceEEEe
Q 037941 192 SRLTTLE-----------------------MLILDAQVMPRELFS-LGLERNKIFLGD-----VWSWTGKYETSRTLKLK 242 (308)
Q Consensus 192 ~~L~~L~-----------------------l~~~~~~~~p~~~~~-~~L~~l~i~~~~-----~~~~~~~~~~L~~L~L~ 242 (308)
++|++|. ++.|.++.+|..++. ++|+.|...++. ++.-++.+..|..+..+
T Consensus 245 ~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aa 324 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAA 324 (1255)
T ss_pred hhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhh
Confidence 4444444 444444555555544 445444433222 22333444444444444
Q ss_pred ecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccccccccccC
Q 037941 243 LDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVSS 303 (308)
Q Consensus 243 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~ 303 (308)
.|...-.++++..+ +.|+.|.+++ +.+-..+..+ .-++.|+.|++..+|++-.-|-+
T Consensus 325 nN~LElVPEglcRC-~kL~kL~L~~-NrLiTLPeaI--HlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 325 NNKLELVPEGLCRC-VKLQKLKLDH-NRLITLPEAI--HLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred ccccccCchhhhhh-HHHHHhcccc-cceeechhhh--hhcCCcceeeccCCcCccCCCCc
Confidence 44444445565554 7788888865 5544433222 34688899999999888776643
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=6.2e-21 Score=170.04 Aligned_cols=234 Identities=21% Similarity=0.302 Sum_probs=150.0
Q ss_pred ccchhhHhhh-hcCCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCc-CCCCchhhcCCCCccEEEccCCCCCCCC
Q 037941 24 ISDLREVFED-LMQKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLS-LVIPDLFFEGVPSLQVLSLNGFHFPSLP 100 (308)
Q Consensus 24 ~~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~lp 100 (308)
+.++.++|+. ....++.+|++..|.+.++-... .++.||.+.+..|++. ..+|.++| ++..|.+|||+.|.+.+.|
T Consensus 41 rt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP 119 (1255)
T KOG0444|consen 41 RTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVP 119 (1255)
T ss_pred hhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcc
Confidence 5667777755 45678888888888876654444 7888888888887763 46777776 6888888888888888888
Q ss_pred CCCCCcccccccccccEEeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccccc-
Q 037941 101 STLGDVATVGVLKKLVIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE- 178 (308)
Q Consensus 101 ~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~- 178 (308)
.+ +..-+++-.|++++|.|..+|.. +-+++.|-+|++++|. ++.+|++ +..+.+|+.|.+++|.+.-..-
T Consensus 120 ~~------LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ-~RRL~~LqtL~Ls~NPL~hfQLr 191 (1255)
T KOG0444|consen 120 TN------LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQ-IRRLSMLQTLKLSNNPLNHFQLR 191 (1255)
T ss_pred hh------hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch-hhhcCHH-HHHHhhhhhhhcCCChhhHHHHh
Confidence 87 77777777888888888888754 4567777888888877 7778877 6777777777777776541100
Q ss_pred -----------------CCcccchhhhhcCCCCCEEEeeeccCccccchhhc-cCCceeEeeccCcccc---cCCCCcCc
Q 037941 179 -----------------GQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS-LGLERNKIFLGDVWSW---TGKYETSR 237 (308)
Q Consensus 179 -----------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~-~~L~~l~i~~~~~~~~---~~~~~~L~ 237 (308)
......+..+-.+.+|+.++++.|.+..+|..+.. .+|..|+++.+.+... .+.-.++.
T Consensus 192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lE 271 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLE 271 (1255)
T ss_pred cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhh
Confidence 00112233344445555555555555555555544 5555555555543331 22334555
Q ss_pred eEEEeecCchhhhhhHHHHhcccceeecCC
Q 037941 238 TLKLKLDNRMYLEHGIKMLLRRTEDLHLDK 267 (308)
Q Consensus 238 ~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 267 (308)
+|+|+.|+.+..++.+-.+ +.|+.|.+.+
T Consensus 272 tLNlSrNQLt~LP~avcKL-~kL~kLy~n~ 300 (1255)
T KOG0444|consen 272 TLNLSRNQLTVLPDAVCKL-TKLTKLYANN 300 (1255)
T ss_pred hhccccchhccchHHHhhh-HHHHHHHhcc
Confidence 5555555555444444443 5555555544
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=5.2e-18 Score=170.20 Aligned_cols=254 Identities=21% Similarity=0.262 Sum_probs=173.4
Q ss_pred hcCCCCeeEEeecCCC-------CCCCCcC-CC-CCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCC
Q 037941 34 LMQKDPIAISHPCRDI-------QELPEKL-EC-PKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLG 104 (308)
Q Consensus 34 ~~~~~l~~L~l~~~~~-------~~~~~~~-~~-~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~ 104 (308)
..+.+++.|.+..+.. ..+|..+ .+ .+|+.|.+.++.+. .+|..+ ...+|+.|++.++.+..+|.+
T Consensus 555 ~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~L~~~-- 629 (1153)
T PLN03210 555 KGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEKLWDG-- 629 (1153)
T ss_pred hcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccccccc--
Confidence 4588999999976542 2356555 44 47999999998765 667665 578999999999999999998
Q ss_pred CcccccccccccEEeecCCc-CcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCc-ccccccCCcc
Q 037941 105 DVATVGVLKKLVIFSFRNSH-IEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSF-THWEVEGQNN 182 (308)
Q Consensus 105 ~~~~l~~l~~L~~L~l~~~~-i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~ 182 (308)
+..+++|++|+++++. +..+|. ++.+++|+.|++++|..+..+|.. ++++++|+.|++++|. +...+.+..-
T Consensus 630 ----~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~L~~c~~L~~Lp~~i~l 703 (1153)
T PLN03210 630 ----VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLDMSRCENLEILPTGINL 703 (1153)
T ss_pred ----cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchh-hhccCCCCEEeCCCCCCcCccCCcCCC
Confidence 8899999999999875 668886 889999999999999888999987 8999999999999874 3322111000
Q ss_pred -----------cchhhh-hcCCCCCEEEeeeccCccccchhhccCCceeEeeccC---ccc--------ccCCCCcCceE
Q 037941 183 -----------ASLAEL-NQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGD---VWS--------WTGKYETSRTL 239 (308)
Q Consensus 183 -----------~~~~~l-~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~---~~~--------~~~~~~~L~~L 239 (308)
.....+ ....+|+.|+++++.+..+|..+..++|+.|.+.... ++. .....++|+.|
T Consensus 704 ~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L 783 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRL 783 (1153)
T ss_pred CCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchhe
Confidence 000000 0112455555555555566655544555555443211 110 01123577788
Q ss_pred EEeecCchh-hhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccccccccccc
Q 037941 240 KLKLDNRMY-LEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVS 302 (308)
Q Consensus 240 ~L~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~ 302 (308)
+|+.|.... .+..+.. +++|+.|++.+|+.++.++... .+++|+.|++++|.+++.+|.
T Consensus 784 ~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~~L~~LP~~~---~L~sL~~L~Ls~c~~L~~~p~ 843 (1153)
T PLN03210 784 FLSDIPSLVELPSSIQN-LHKLEHLEIENCINLETLPTGI---NLESLESLDLSGCSRLRTFPD 843 (1153)
T ss_pred eCCCCCCccccChhhhC-CCCCCEEECCCCCCcCeeCCCC---CccccCEEECCCCCccccccc
Confidence 887765433 2344444 4888888888888877654322 577888888888888777664
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.76 E-value=1.3e-20 Score=142.62 Aligned_cols=162 Identities=19% Similarity=0.340 Sum_probs=150.3
Q ss_pred hcCCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941 34 LMQKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL 112 (308)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l 112 (308)
-..+.+++|.++.|++..+|+.+ .+.+|+.|++.+|+++ ++|..+ +.+++|+.|++..|++..+|.+ |+.+
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~~lprg------fgs~ 101 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLNILPRG------FGSF 101 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhhcCccc------cCCC
Confidence 45788999999999999999988 9999999999999988 778877 7899999999999999999999 9999
Q ss_pred ccccEEeecCCcCc--ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhc
Q 037941 113 KKLVIFSFRNSHIE--QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQ 190 (308)
Q Consensus 113 ~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 190 (308)
+.|+.||+++|.+. .+|..+..|+-|+.|++++|. ++.+|.+ ++++++|+.|.+..|.+. +.+.+++.
T Consensus 102 p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll--------~lpkeig~ 171 (264)
T KOG0617|consen 102 PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLL--------SLPKEIGD 171 (264)
T ss_pred chhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchh--------hCcHHHHH
Confidence 99999999999987 899999999999999999998 8999998 899999999999999877 56789999
Q ss_pred CCCCCEEEeeeccCccccchhhc
Q 037941 191 LSRLTTLEMLILDAQVMPRELFS 213 (308)
Q Consensus 191 l~~L~~L~l~~~~~~~~p~~~~~ 213 (308)
+.+|++|++.+|+++.+|+.+..
T Consensus 172 lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 172 LTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred HHHHHHHhcccceeeecChhhhh
Confidence 99999999999999999988665
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.75 E-value=5.7e-20 Score=155.96 Aligned_cols=259 Identities=22% Similarity=0.257 Sum_probs=160.0
Q ss_pred ccchhhHhhh-hcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCC
Q 037941 24 ISDLREVFED-LMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPST 102 (308)
Q Consensus 24 ~~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~ 102 (308)
.+.+..+|+. ..++++..|+++.|++..+|+...|..|.+++.+.|++. -+|.+...++.++.+||+.+|++.++|++
T Consensus 192 ~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde 270 (565)
T KOG0472|consen 192 SNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDE 270 (565)
T ss_pred hhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchH
Confidence 3444555544 446666677777777777775557777777777777765 56667766778888888888888888887
Q ss_pred CCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcch--------------------------
Q 037941 103 LGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNV-------------------------- 156 (308)
Q Consensus 103 ~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------------------- 156 (308)
++.+.+|.+||+++|.|+.+|..++++ +|+.|.+-+|. +..+..++
T Consensus 271 ------~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~ 342 (565)
T KOG0472|consen 271 ------ICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG 342 (565)
T ss_pred ------HHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence 777777888888888888888777777 77777776665 22111111
Q ss_pred ---------------hcCCCCCceEEccCCccc--------------------------ccccC----------------
Q 037941 157 ---------------ISNLPRLEELYMGNSFTH--------------------------WEVEG---------------- 179 (308)
Q Consensus 157 ---------------~~~l~~L~~L~l~~~~~~--------------------------~~~~~---------------- 179 (308)
...+.+.+.|+++.-.++ ..+.+
T Consensus 343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn 422 (565)
T KOG0472|consen 343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNN 422 (565)
T ss_pred cccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcC
Confidence 111222333333322222 11111
Q ss_pred CcccchhhhhcCCCCCEEEeeeccCccccchhhc-cCCceeEeeccCcccccCCCCcCceEE---EeecCchhh-hhhHH
Q 037941 180 QNNASLAELNQLSRLTTLEMLILDAQVMPRELFS-LGLERNKIFLGDVWSWTGKYETSRTLK---LKLDNRMYL-EHGIK 254 (308)
Q Consensus 180 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~-~~L~~l~i~~~~~~~~~~~~~~L~~L~---L~~~~~~~~-~~~~~ 254 (308)
.....+..++.+++|..|+++.|.+.++|..++. ..|+.++++.+.+...+..+..++.+. .+.|+.... ..++.
T Consensus 423 ~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~ 502 (565)
T KOG0472|consen 423 KISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLK 502 (565)
T ss_pred ccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhh
Confidence 1112234556666777777777766677766665 556666666665444333333333222 222333222 33455
Q ss_pred HHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccc
Q 037941 255 MLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNAS 295 (308)
Q Consensus 255 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 295 (308)
.+ .+|..|++.+ +.++.+++.+ +.|.+|++|++.++|
T Consensus 503 nm-~nL~tLDL~n-Ndlq~IPp~L--gnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 503 NM-RNLTTLDLQN-NDLQQIPPIL--GNMTNLRHLELDGNP 539 (565)
T ss_pred hh-hhcceeccCC-CchhhCChhh--ccccceeEEEecCCc
Confidence 54 8899999987 8889888866 889999999999984
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.71 E-value=1.6e-16 Score=150.15 Aligned_cols=233 Identities=18% Similarity=0.101 Sum_probs=125.0
Q ss_pred eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCC
Q 037941 21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP 100 (308)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp 100 (308)
...+..+..+|+. ...+++.|.+.+|.+..+|.. .++|++|++++|.++ .+|. ..++|+.|++++|.+..+|
T Consensus 207 dLs~~~LtsLP~~-l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~Lt-sLP~----lp~sL~~L~Ls~N~L~~Lp 278 (788)
T PRK15387 207 NVGESGLTTLPDC-LPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLP 278 (788)
T ss_pred EcCCCCCCcCCcc-hhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCccC-cccC----cccccceeeccCCchhhhh
Confidence 3445677777753 356788899998888887753 578889999888877 4553 2356677777777666555
Q ss_pred CCCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhc-----------------CCCCC
Q 037941 101 STLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVIS-----------------NLPRL 163 (308)
Q Consensus 101 ~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----------------~l~~L 163 (308)
.. ..+|+.|++++|.++.+|.. .++|+.|++++|. ++.+|.. .. -..+|
T Consensus 279 ~l---------p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~l-p~~L~~L~Ls~N~L~~LP~lp~~L 344 (788)
T PRK15387 279 AL---------PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-PSELCKLWAYNNQLTSLPTLPSGL 344 (788)
T ss_pred hc---------hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCC-cccccccccccCcccccccccccc
Confidence 43 12344444444444444431 2344444444443 3333321 00 01355
Q ss_pred ceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccccCCCCcCceEEEee
Q 037941 164 EELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKL 243 (308)
Q Consensus 164 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~ 243 (308)
+.|++++|.+...+. ...+|+.|++++|.+..+|... .+|+.|++..+.+.......++|+.|+++.
T Consensus 345 q~LdLS~N~Ls~LP~-----------lp~~L~~L~Ls~N~L~~LP~l~--~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~ 411 (788)
T PRK15387 345 QELSVSDNQLASLPT-----------LPSELYKLWAYNNRLTSLPALP--SGLKELIVSGNRLTSLPVLPSELKELMVSG 411 (788)
T ss_pred ceEecCCCccCCCCC-----------CCcccceehhhccccccCcccc--cccceEEecCCcccCCCCcccCCCEEEccC
Confidence 666666665552211 0123444555555554444321 345555555554444333345566666666
Q ss_pred cCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccc
Q 037941 244 DNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNAS 295 (308)
Q Consensus 244 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 295 (308)
|.....+. .+.+|+.|++++ |.++.++..+ ..+++|+.|++++|+
T Consensus 412 N~LssIP~----l~~~L~~L~Ls~-NqLt~LP~sl--~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 412 NRLTSLPM----LPSGLLSLSVYR-NQLTRLPESL--IHLSSETTVNLEGNP 456 (788)
T ss_pred CcCCCCCc----chhhhhhhhhcc-CcccccChHH--hhccCCCeEECCCCC
Confidence 55433221 224556666665 5555443322 345667777777764
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.71 E-value=7.2e-20 Score=155.36 Aligned_cols=239 Identities=23% Similarity=0.260 Sum_probs=157.7
Q ss_pred hcCCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941 34 LMQKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL 112 (308)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l 112 (308)
.....+.++.++.|...++|+.+ .+..+..++.++|.+. .+|..+ ..+.+++.++.++|.+.++|++ ++.+
T Consensus 65 ~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i-~s~~~l~~l~~s~n~~~el~~~------i~~~ 136 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQI-GSLISLVKLDCSSNELKELPDS------IGRL 136 (565)
T ss_pred hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHH-hhhhhhhhhhccccceeecCch------HHHH
Confidence 34455556666666665555555 5556666666665554 455555 3566666666666666666666 6666
Q ss_pred ccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCC
Q 037941 113 KKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS 192 (308)
Q Consensus 113 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~ 192 (308)
..|..++..+|+++.+|++++.+.+|..+++.+|. +..+|+..+. ++.|++++...|.+. ..+.+++.+.
T Consensus 137 ~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~L~--------tlP~~lg~l~ 206 (565)
T KOG0472|consen 137 LDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNLLE--------TLPPELGGLE 206 (565)
T ss_pred hhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhhhh--------cCChhhcchh
Confidence 66666666666666666666666666666666666 5566665333 667777777766665 3456777777
Q ss_pred CCCEEEeeeccCccccchhhccCCceeEeeccCcccc----cCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCc
Q 037941 193 RLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSW----TGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKL 268 (308)
Q Consensus 193 ~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~----~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~ 268 (308)
+|..|.+..|++..+|+.-....|+.++...+.+... ...++.+..|+|..|+....++++--+ .+|++|++++
T Consensus 207 ~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clL-rsL~rLDlSN- 284 (565)
T KOG0472|consen 207 SLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLL-RSLERLDLSN- 284 (565)
T ss_pred hhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHh-hhhhhhcccC-
Confidence 7777777777777777554446667766655543322 346778888899888887777766554 8899999988
Q ss_pred cchhhhhhccCCCCCCcccEEeccccc
Q 037941 269 NGLQNVLHELDGEGFPRLKHLLVQNAS 295 (308)
Q Consensus 269 ~~~~~~~~~~~~~~~~~L~~L~l~~c~ 295 (308)
+.+...+.++ +.+ .|++|.+.++|
T Consensus 285 N~is~Lp~sL--gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 285 NDISSLPYSL--GNL-HLKFLALEGNP 308 (565)
T ss_pred CccccCCccc--ccc-eeeehhhcCCc
Confidence 7777655444 566 88888888885
No 14
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=9.7e-17 Score=152.25 Aligned_cols=237 Identities=17% Similarity=0.203 Sum_probs=135.7
Q ss_pred ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCC
Q 037941 24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL 103 (308)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~ 103 (308)
+.++..+|.. ..+.++.|++++|.+..+|... .++|++|++++|.++ .+|..+. ..|+.|++++|.+..+|..
T Consensus 187 ~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~~LP~~- 259 (754)
T PRK15370 187 ILGLTTIPAC-IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRITELPER- 259 (754)
T ss_pred CCCcCcCCcc-cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCccc-cCChhhh---ccccEEECcCCccCcCChh-
Confidence 3445555532 3456666666666666665543 246666666666655 4454332 3566666666666666665
Q ss_pred CCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCccc
Q 037941 104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNA 183 (308)
Q Consensus 104 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 183 (308)
+. .+|++|++++|.++.+|..+. .+|+.|++++|. ++.+|.. + ..+|+.|++++|.+...+
T Consensus 260 -----l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~-l--p~sL~~L~Ls~N~Lt~LP------ 320 (754)
T PRK15370 260 -----LP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAH-L--PSGITHLNVQSNSLTALP------ 320 (754)
T ss_pred -----Hh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCccc-c--hhhHHHHHhcCCccccCC------
Confidence 32 356666666666666665442 366666666665 5555543 1 135666666666655221
Q ss_pred chhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccccCC-CCcCceEEEeecCchhhhhhHHHHhcccce
Q 037941 184 SLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGK-YETSRTLKLKLDNRMYLEHGIKMLLRRTED 262 (308)
Q Consensus 184 ~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 262 (308)
..+ .++|+.|++++|.++.+|..+. ++|+.|++..+.+....+. .+.|+.|+|+.|.....+..+ .++|+.
T Consensus 321 --~~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~l---~~sL~~ 392 (754)
T PRK15370 321 --ETL--PPGLKTLEAGENALTSLPASLP-PELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENL---PAALQI 392 (754)
T ss_pred --ccc--cccceeccccCCccccCChhhc-CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCHhH---HHHHHH
Confidence 111 2467777777777777776543 6777777766654433222 246777777777655444333 245777
Q ss_pred eecCCccchhhhhhccC--CCCCCcccEEeccccc
Q 037941 263 LHLDKLNGLQNVLHELD--GEGFPRLKHLLVQNAS 295 (308)
Q Consensus 263 L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~c~ 295 (308)
|++++ +.++.++..+. ...++.+..|.+.+++
T Consensus 393 LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 393 MQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred Hhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 77776 44554332221 1334667777777764
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=2.5e-16 Score=149.49 Aligned_cols=228 Identities=17% Similarity=0.220 Sum_probs=176.8
Q ss_pred CCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941 36 QKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL 115 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L 115 (308)
..+...|++.++++..+|..+ .++++.|++++|.++ .+|..++ .+|++|++++|.+..+|.. + ..+|
T Consensus 177 ~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsLP~~------l--~~~L 243 (754)
T PRK15370 177 KNNKTELRLKILGLTTIPACI-PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSIPAT------L--PDTI 243 (754)
T ss_pred ccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccCChh------h--hccc
Confidence 456789999999998888755 358999999999988 6777553 5899999999999999987 4 2479
Q ss_pred cEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCC
Q 037941 116 VIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLT 195 (308)
Q Consensus 116 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~ 195 (308)
+.|++++|.+..+|..+. .+|+.|++++|. ++.+|.. + ..+|+.|++++|.+...+ ..+ .+.|+
T Consensus 244 ~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~-l--~~sL~~L~Ls~N~Lt~LP--------~~l--p~sL~ 307 (754)
T PRK15370 244 QEMELSINRITELPERLP--SALQSLDLFHNK-ISCLPEN-L--PEELRYLSVYDNSIRTLP--------AHL--PSGIT 307 (754)
T ss_pred cEEECcCCccCcCChhHh--CCCCEEECcCCc-cCccccc-c--CCCCcEEECCCCccccCc--------ccc--hhhHH
Confidence 999999999999998664 589999999988 7788875 3 258999999999988332 222 24688
Q ss_pred EEEeeeccCccccchhhccCCceeEeeccCcccccCC-CCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhh
Q 037941 196 TLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGK-YETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNV 274 (308)
Q Consensus 196 ~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 274 (308)
.|++++|.+..+|..+. .+|+.|.+..+.+...... .++|+.|+++.|.....+..+ .++|++|++++ +.++.+
T Consensus 308 ~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~l---p~~L~~LdLs~-N~Lt~L 382 (754)
T PRK15370 308 HLNVQSNSLTALPETLP-PGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETL---PPTITTLDVSR-NALTNL 382 (754)
T ss_pred HHHhcCCccccCCcccc-ccceeccccCCccccCChhhcCcccEEECCCCCCCcCChhh---cCCcCEEECCC-CcCCCC
Confidence 99999999998887654 6889988877765444332 358999999998766544333 47899999998 556665
Q ss_pred hhccCCCCCCcccEEecccccccccccc
Q 037941 275 LHELDGEGFPRLKHLLVQNASEILYIVS 302 (308)
Q Consensus 275 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~ 302 (308)
+..+. +.|+.|++++| ++..+|.
T Consensus 383 P~~l~----~sL~~LdLs~N-~L~~LP~ 405 (754)
T PRK15370 383 PENLP----AALQIMQASRN-NLVRLPE 405 (754)
T ss_pred CHhHH----HHHHHHhhccC-CcccCch
Confidence 54332 47999999997 7777764
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.66 E-value=1.4e-15 Score=143.93 Aligned_cols=230 Identities=19% Similarity=0.160 Sum_probs=162.5
Q ss_pred CCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccccc
Q 037941 37 KDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLV 116 (308)
Q Consensus 37 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~ 116 (308)
.+-..|+++.+.+..+|+.+. ++++.|++.+|.++ .+|. ..++|++|++++|.++.+|.. .++|+
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l---------p~sL~ 265 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---------PPGLL 265 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc---------ccccc
Confidence 456689999999999998663 48999999999988 4664 368999999999999999874 36889
Q ss_pred EEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCc--------ccchhhh
Q 037941 117 IFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQN--------NASLAEL 188 (308)
Q Consensus 117 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------~~~~~~l 188 (308)
+|++.+|.++.+|.. .++|+.|++++|. ++.+|.. +++|+.|++++|.+...+.... ...+..+
T Consensus 266 ~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~-Lt~LP~~----p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~L 337 (788)
T PRK15387 266 ELSIFSNPLTHLPAL---PSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSL 337 (788)
T ss_pred eeeccCCchhhhhhc---hhhcCEEECcCCc-ccccccc----ccccceeECCCCccccCCCCcccccccccccCccccc
Confidence 999999999988863 3678899999998 7888863 4789999999998885322100 0000111
Q ss_pred hcC-CCCCEEEeeeccCccccchhhccCCceeEeeccCcccccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCC
Q 037941 189 NQL-SRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDK 267 (308)
Q Consensus 189 ~~l-~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 267 (308)
..+ .+|+.|++++|.+..+|.. ..+|+.|.+..+.+........+|+.|+++.|.....+. .+++|+.|++++
T Consensus 338 P~lp~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~----l~s~L~~LdLS~ 411 (788)
T PRK15387 338 PTLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPV----LPSELKELMVSG 411 (788)
T ss_pred cccccccceEecCCCccCCCCCC--CcccceehhhccccccCcccccccceEEecCCcccCCCC----cccCCCEEEccC
Confidence 111 2677788888777777653 356666666666554444444578888888776543222 236788888887
Q ss_pred ccchhhhhhccCCCCCCcccEEecccccccccccc
Q 037941 268 LNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVS 302 (308)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~ 302 (308)
+.++.++. ...+|+.|++++| ++..+|+
T Consensus 412 -N~LssIP~-----l~~~L~~L~Ls~N-qLt~LP~ 439 (788)
T PRK15387 412 -NRLTSLPM-----LPSGLLSLSVYRN-QLTRLPE 439 (788)
T ss_pred -CcCCCCCc-----chhhhhhhhhccC-cccccCh
Confidence 55665432 2356788888886 6777775
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.62 E-value=8.7e-18 Score=127.41 Aligned_cols=169 Identities=23% Similarity=0.345 Sum_probs=146.2
Q ss_pred CCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCccc
Q 037941 49 IQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQL 128 (308)
Q Consensus 49 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l 128 (308)
+.+++..+++.+.+.|.+++|.++ .+|+.+ ..+.+|++|++.+|.++++|.+ ++.+++|+.|++..|.+..+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~------issl~klr~lnvgmnrl~~l 94 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTS------ISSLPKLRILNVGMNRLNIL 94 (264)
T ss_pred HhhcccccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChh------hhhchhhhheecchhhhhcC
Confidence 467788889999999999999998 566666 4899999999999999999999 99999999999999999999
Q ss_pred chhhhCcCCCCEEecCCCCCCC-ccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccc
Q 037941 129 PEEIGQLTRLKLLDLSTCSKLK-SIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVM 207 (308)
Q Consensus 129 ~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 207 (308)
|..++.++-|+.|++++|..-+ .+|.. |.-++.|+.|+++.|.+. -.+...+.+++|+.|.+.+|.+-++
T Consensus 95 prgfgs~p~levldltynnl~e~~lpgn-ff~m~tlralyl~dndfe--------~lp~dvg~lt~lqil~lrdndll~l 165 (264)
T KOG0617|consen 95 PRGFGSFPALEVLDLTYNNLNENSLPGN-FFYMTTLRALYLGDNDFE--------ILPPDVGKLTNLQILSLRDNDLLSL 165 (264)
T ss_pred ccccCCCchhhhhhccccccccccCCcc-hhHHHHHHHHHhcCCCcc--------cCChhhhhhcceeEEeeccCchhhC
Confidence 9999999999999999987443 46665 677999999999999877 4457889999999999999999999
Q ss_pred cchhhc-cCCceeEeeccCcccccCCCC
Q 037941 208 PRELFS-LGLERNKIFLGDVWSWTGKYE 234 (308)
Q Consensus 208 p~~~~~-~~L~~l~i~~~~~~~~~~~~~ 234 (308)
|..+.. ..|+.|.|..+.+....+.+.
T Consensus 166 pkeig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 166 PKEIGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred cHHHHHHHHHHHHhcccceeeecChhhh
Confidence 999988 888888888776554444333
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.62 E-value=1.5e-17 Score=141.06 Aligned_cols=264 Identities=20% Similarity=0.221 Sum_probs=165.9
Q ss_pred eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccC-CCCC
Q 037941 21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNG-FHFP 97 (308)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~ 97 (308)
-|.+.++.++| ...+.....++|..|.+..+|+.. .+++||.|+++.|.++..-|+ .|.++..+..|-+.+ |+|+
T Consensus 52 dCr~~GL~eVP-~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~-AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 52 DCRGKGLTEVP-ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPD-AFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EccCCCcccCc-ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChH-hhhhhHhhhHHHhhcCCchh
Confidence 35578899999 445888999999999999998877 999999999999999844444 457899887776655 9999
Q ss_pred CCCCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccc
Q 037941 98 SLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWE 176 (308)
Q Consensus 98 ~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 176 (308)
.+|+.. |+.+..|+.|.+.-|++.-++ ..+..+++|.-|.+.+|. +..++.+.+..+..++.+.+..|.+...
T Consensus 130 ~l~k~~-----F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np~icd 203 (498)
T KOG4237|consen 130 DLPKGA-----FGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNPFICD 203 (498)
T ss_pred hhhhhH-----hhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCccccc
Confidence 999987 999999999999999988554 668899999999999987 8888887788899999998887764321
Q ss_pred ccC-----CcccchhhhhcCCCCCEEEeeeccCccccchhhccCCcee--EeeccCcc------cccCCCCcCceEEEee
Q 037941 177 VEG-----QNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERN--KIFLGDVW------SWTGKYETSRTLKLKL 243 (308)
Q Consensus 177 ~~~-----~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l--~i~~~~~~------~~~~~~~~L~~L~L~~ 243 (308)
..- ...-.+.+++.........+...++..++..-+...++.+ .+.....+ ..+..+++|+.|+|+.
T Consensus 204 CnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn 283 (498)
T KOG4237|consen 204 CNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN 283 (498)
T ss_pred cccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCC
Confidence 110 0001122333333333333444444444333332222222 01111111 1244566666666666
Q ss_pred cCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccc
Q 037941 244 DNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNA 294 (308)
Q Consensus 244 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 294 (308)
|......++...-...+++|.+.+ +.+..+.... ..++..|+.|++.++
T Consensus 284 N~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~-f~~ls~L~tL~L~~N 332 (498)
T KOG4237|consen 284 NKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGM-FQGLSGLKTLSLYDN 332 (498)
T ss_pred CccchhhhhhhcchhhhhhhhcCc-chHHHHHHHh-hhccccceeeeecCC
Confidence 655544333333234444554444 4444332221 133444444444444
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.54 E-value=7.6e-16 Score=143.08 Aligned_cols=241 Identities=19% Similarity=0.234 Sum_probs=127.9
Q ss_pred CCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccc
Q 037941 36 QKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKK 114 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~ 114 (308)
..++++++++.+.+..+|.-+ .|.+|+.+...+|.++ .+|..++ .+.+|++|.+.+|.++.+|+. ...++.
T Consensus 240 p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~-~~~~L~~l~~~~nel~yip~~------le~~~s 311 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRIS-RITSLVSLSAAYNELEYIPPF------LEGLKS 311 (1081)
T ss_pred cccceeeecchhhhhcchHHHHhcccceEecccchhHH-hhHHHHh-hhhhHHHHHhhhhhhhhCCCc------ccccce
Confidence 344555555555555555322 5555555555555553 4444442 455555555555555555554 444555
Q ss_pred ccEEeecCCcCcccchhhhCc-C-CCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCC
Q 037941 115 LVIFSFRNSHIEQLPEEIGQL-T-RLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS 192 (308)
Q Consensus 115 L~~L~l~~~~i~~l~~~~~~l-~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~ 192 (308)
|+.|++..|.+.++|..+..- . +|..++.+.+. +...|.---...+.|+.|.+.+|.+.+ .....+.+++
T Consensus 312 L~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~-l~~lp~~~e~~~~~Lq~LylanN~Ltd-------~c~p~l~~~~ 383 (1081)
T KOG0618|consen 312 LRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNK-LSTLPSYEENNHAALQELYLANNHLTD-------SCFPVLVNFK 383 (1081)
T ss_pred eeeeeehhccccccchHHHhhhhHHHHHHhhhhcc-ccccccccchhhHHHHHHHHhcCcccc-------cchhhhcccc
Confidence 555555555555555432221 1 23444444433 333332101123445555555555552 2235667788
Q ss_pred CCCEEEeeeccCccccchhhc--cCCceeEeeccCcccc---cCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCC
Q 037941 193 RLTTLEMLILDAQVMPRELFS--LGLERNKIFLGDVWSW---TGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDK 267 (308)
Q Consensus 193 ~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~~---~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 267 (308)
+|+.|++++|++.+||..... +.|+.|+++.+.+... ...++.|++|..-.|.....+ .+..+ +.|+.++++.
T Consensus 384 hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l-~qL~~lDlS~ 461 (1081)
T KOG0618|consen 384 HLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQL-PQLKVLDLSC 461 (1081)
T ss_pred ceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhc-CcceEEeccc
Confidence 888888888888888877654 7777777776664433 344555555555444444333 33333 6777777764
Q ss_pred ccchhhhhhccCCCCCCcccEEecccccc
Q 037941 268 LNGLQNVLHELDGEGFPRLKHLLVQNASE 296 (308)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 296 (308)
|.++.+..... ..-|+|++|+++++..
T Consensus 462 -N~L~~~~l~~~-~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 462 -NNLSEVTLPEA-LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred -chhhhhhhhhh-CCCcccceeeccCCcc
Confidence 66665443221 1125777777777653
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.51 E-value=2e-15 Score=140.36 Aligned_cols=244 Identities=18% Similarity=0.228 Sum_probs=177.7
Q ss_pred CCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccc
Q 037941 36 QKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKK 114 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~ 114 (308)
.-++.+|++++|.+.++|..+ .+.+|+.|+++.|.+. .+|... .++.+|+++.|.+|.+..+|.+ +..+++
T Consensus 44 ~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~-~~~~~l~~lnL~~n~l~~lP~~------~~~lkn 115 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSC-SNMRNLQYLNLKNNRLQSLPAS------ISELKN 115 (1081)
T ss_pred eeeeEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhh-hhhhcchhheeccchhhcCchh------HHhhhc
Confidence 345899999999999999988 9999999999999886 566554 7899999999999999999999 999999
Q ss_pred ccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcc---------------hhcCCCCCce-EEccCCccccccc
Q 037941 115 LVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPN---------------VISNLPRLEE-LYMGNSFTHWEVE 178 (308)
Q Consensus 115 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~---------------~~~~l~~L~~-L~l~~~~~~~~~~ 178 (308)
|++|++++|++..+|..+..++.++.+..++|..+..++.. +.....++++ |++..|++.
T Consensus 116 l~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~---- 191 (1081)
T KOG0618|consen 116 LQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEME---- 191 (1081)
T ss_pred ccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhh----
Confidence 99999999999999988887777777777766333333221 1112233444 777777655
Q ss_pred CCcccchhhhhcCCCCCEEE--------------------eeeccCccccchhhccCCceeEeeccC---cccccCCCCc
Q 037941 179 GQNNASLAELNQLSRLTTLE--------------------MLILDAQVMPRELFSLGLERNKIFLGD---VWSWTGKYET 235 (308)
Q Consensus 179 ~~~~~~~~~l~~l~~L~~L~--------------------l~~~~~~~~p~~~~~~~L~~l~i~~~~---~~~~~~~~~~ 235 (308)
...+..+.+|+.+. .+.|.++..-......+|+.++++.+. ++.|.+.+.+
T Consensus 192 ------~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~n 265 (1081)
T KOG0618|consen 192 ------VLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACAN 265 (1081)
T ss_pred ------hhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhccc
Confidence 12233333333333 333333322223233777888776554 5678888999
Q ss_pred CceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccccccccccc
Q 037941 236 SRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVS 302 (308)
Q Consensus 236 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~ 302 (308)
|..+....|........+... .+|++|.+.. +.++.+++. .+++.+|+.|++..+ +|...|+
T Consensus 266 le~l~~n~N~l~~lp~ri~~~-~~L~~l~~~~-nel~yip~~--le~~~sL~tLdL~~N-~L~~lp~ 327 (1081)
T KOG0618|consen 266 LEALNANHNRLVALPLRISRI-TSLVSLSAAY-NELEYIPPF--LEGLKSLRTLDLQSN-NLPSLPD 327 (1081)
T ss_pred ceEecccchhHHhhHHHHhhh-hhHHHHHhhh-hhhhhCCCc--ccccceeeeeeehhc-cccccch
Confidence 999998888877777777776 8888888877 777776653 367889999999887 7777775
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=4.7e-15 Score=126.05 Aligned_cols=121 Identities=18% Similarity=0.226 Sum_probs=103.1
Q ss_pred eecccchhhHhhh--hcCCCCeeEEeecCCCCCCCCcC--CCCCccEEEecC-CCCcCCCCchhhcCCCCccEEEccCCC
Q 037941 21 IQIISDLREVFED--LMQKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFS-EKLSLVIPDLFFEGVPSLQVLSLNGFH 95 (308)
Q Consensus 21 ~~~~~~~~~~~~~--~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~ 95 (308)
..+.++++.+|+. +...+||+|+|+.|.+..+.+.. .++.+.+|.+.+ |.++ .+|...|.++..++-|.+.-|.
T Consensus 73 rLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 73 RLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANH 151 (498)
T ss_pred EeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhh
Confidence 3456788888866 57889999999999998875544 999999999888 6666 8888888999999999999999
Q ss_pred CCCCCCCCCCcccccccccccEEeecCCcCcccch-hhhCcCCCCEEecCCCC
Q 037941 96 FPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCS 147 (308)
Q Consensus 96 ~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~ 147 (308)
+.-++... +..+++|+.|.+..|.+..+++ .+..+..++++.+..|.
T Consensus 152 i~Cir~~a-----l~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 152 INCIRQDA-----LRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hcchhHHH-----HHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 98777665 8999999999999999999987 68888899988887665
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.37 E-value=7.3e-13 Score=115.64 Aligned_cols=245 Identities=16% Similarity=0.033 Sum_probs=146.5
Q ss_pred CCCCeeEEeecCCCC-----CCCCcC-CCCCccEEEecCCCCcC------CCCchhhcCCCCccEEEccCCCCCC-CCCC
Q 037941 36 QKDPIAISHPCRDIQ-----ELPEKL-ECPKLKLFFLFSEKLSL------VIPDLFFEGVPSLQVLSLNGFHFPS-LPST 102 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~-----~~~~~~-~~~~L~~L~l~~~~~~~------~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~ 102 (308)
...++.+++.++.+. .++... ..++++.+++.++.+.+ .++ ..+..+++|+.|++++|.+.. .+..
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL-QGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH-HHHHhcCceeEEEccCCCCChhHHHH
Confidence 455889999988872 244444 67788999988877652 111 234568899999999888873 3333
Q ss_pred CCCccccccccc---ccEEeecCCcCc-----ccchhhhCc-CCCCEEecCCCCCCC-----ccCcchhcCCCCCceEEc
Q 037941 103 LGDVATVGVLKK---LVIFSFRNSHIE-----QLPEEIGQL-TRLKLLDLSTCSKLK-----SIRPNVISNLPRLEELYM 168 (308)
Q Consensus 103 ~~~~~~l~~l~~---L~~L~l~~~~i~-----~l~~~~~~l-~~L~~L~l~~~~~~~-----~~~~~~~~~l~~L~~L~l 168 (308)
+..+.+ |++|++++|.+. .+...+..+ ++|+.|++++|. ++ .++.. +..+++|++|++
T Consensus 101 ------~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~-~~~~~~L~~L~l 172 (319)
T cd00116 101 ------LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKA-LRANRDLKELNL 172 (319)
T ss_pred ------HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHH-HHhCCCcCEEEC
Confidence 444444 999999988876 233445666 888999999987 44 22222 566778999999
Q ss_pred cCCcccccccCCcccchhhhhcCCCCCEEEeeeccCcccc-----chhhc-cCCceeEeeccCcccc-----cC----CC
Q 037941 169 GNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMP-----RELFS-LGLERNKIFLGDVWSW-----TG----KY 233 (308)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p-----~~~~~-~~L~~l~i~~~~~~~~-----~~----~~ 233 (308)
++|.+.+.. .......+..+++|+.|++++|.++... ..+.. ++|+.|++..+.+.+. .. ..
T Consensus 173 ~~n~l~~~~---~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~ 249 (319)
T cd00116 173 ANNGIGDAG---IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPN 249 (319)
T ss_pred cCCCCchHH---HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccC
Confidence 988877311 1122345566678999999888764322 22111 5677777766554321 11 13
Q ss_pred CcCceEEEeecCchhh-----hhhHHHHhcccceeecCCccchhhhhhccC---CCCC-CcccEEecccc
Q 037941 234 ETSRTLKLKLDNRMYL-----EHGIKMLLRRTEDLHLDKLNGLQNVLHELD---GEGF-PRLKHLLVQNA 294 (308)
Q Consensus 234 ~~L~~L~L~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~-~~L~~L~l~~c 294 (308)
+.|+.|+++.|..... ...+.. +++|++++++++ .+...+.... ...+ +.|+.|++.+.
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~-~~~L~~l~l~~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAE-KESLLELDLRGN-KFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhc-CCCccEEECCCC-CCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 5777777777654311 112222 256777777763 3332211000 1223 56666666654
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.37 E-value=8.6e-13 Score=115.20 Aligned_cols=246 Identities=17% Similarity=0.096 Sum_probs=139.7
Q ss_pred EEeecCCC--CCCCCcC-CCCCccEEEecCCCCcCC----CCchhhcCCCCccEEEccCCCCCCCCCCCCCc-ccccccc
Q 037941 42 ISHPCRDI--QELPEKL-ECPKLKLFFLFSEKLSLV----IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV-ATVGVLK 113 (308)
Q Consensus 42 L~l~~~~~--~~~~~~~-~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~-~~l~~l~ 113 (308)
|+|.++.+ ..+...+ .+.+++.+.+.++.++.. ++. .+...+.++.++++++.+...+..+..+ ..+..++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 45555555 2333333 566688888888876432 222 2345667888888877665322221000 1155677
Q ss_pred cccEEeecCCcCc-ccchhhhCcCC---CCEEecCCCCCCCc-----cCcchhcCC-CCCceEEccCCcccccccCCccc
Q 037941 114 KLVIFSFRNSHIE-QLPEEIGQLTR---LKLLDLSTCSKLKS-----IRPNVISNL-PRLEELYMGNSFTHWEVEGQNNA 183 (308)
Q Consensus 114 ~L~~L~l~~~~i~-~l~~~~~~l~~---L~~L~l~~~~~~~~-----~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~ 183 (308)
+|++|++++|.+. ..+..+..+.+ |+.|++++|. +.. +... +..+ ++|+.|++++|.+.+.. ...
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~-l~~~~~~L~~L~L~~n~l~~~~---~~~ 156 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKG-LKDLPPALEKLVLGRNRLEGAS---CEA 156 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHH-HHhCCCCceEEEcCCCcCCchH---HHH
Confidence 8888888888776 44444544444 8888888876 431 1112 4455 78888888888777321 112
Q ss_pred chhhhhcCCCCCEEEeeeccCcc-----ccchhhc-cCCceeEeeccCcc--------cccCCCCcCceEEEeecCchhh
Q 037941 184 SLAELNQLSRLTTLEMLILDAQV-----MPRELFS-LGLERNKIFLGDVW--------SWTGKYETSRTLKLKLDNRMYL 249 (308)
Q Consensus 184 ~~~~l~~l~~L~~L~l~~~~~~~-----~p~~~~~-~~L~~l~i~~~~~~--------~~~~~~~~L~~L~L~~~~~~~~ 249 (308)
....+..+++|++|++++|.++. ++..+.. ++|+.|++..+.+. .....+++|+.|+++.|.....
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 33456677788888888877652 2222211 57788777655432 2345667788888887654321
Q ss_pred -hhhHHHH----hcccceeecCCccchhhhhhc-c--CCCCCCcccEEecccc
Q 037941 250 -EHGIKML----LRRTEDLHLDKLNGLQNVLHE-L--DGEGFPRLKHLLVQNA 294 (308)
Q Consensus 250 -~~~~~~~----~~~L~~L~l~~~~~~~~~~~~-~--~~~~~~~L~~L~l~~c 294 (308)
...+... .+.|++|++.+|. +++.... + ....+++|+.+++++|
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N 288 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGN 288 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCC
Confidence 1122221 2578888888753 3211110 0 1133477888888776
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.29 E-value=5.6e-12 Score=98.92 Aligned_cols=140 Identities=21% Similarity=0.271 Sum_probs=44.1
Q ss_pred CCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCc
Q 037941 47 RDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIE 126 (308)
Q Consensus 47 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~ 126 (308)
+.+...+...++.++++|++.+|.++. +.. +-..+.+|++|++++|.+..++. +..+++|++|++++|.|+
T Consensus 7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~-Ie~-L~~~l~~L~~L~Ls~N~I~~l~~-------l~~L~~L~~L~L~~N~I~ 77 (175)
T PF14580_consen 7 NMIEQIAQYNNPVKLRELNLRGNQIST-IEN-LGATLDKLEVLDLSNNQITKLEG-------LPGLPRLKTLDLSNNRIS 77 (175)
T ss_dssp ------------------------------S---TT-TT--EEE-TTS--S--TT-----------TT--EEE--SS---
T ss_pred ccccccccccccccccccccccccccc-ccc-hhhhhcCCCEEECCCCCCccccC-------ccChhhhhhcccCCCCCC
Confidence 334444444456667777777777652 222 11246777777777777777664 667777888888888877
Q ss_pred ccchhh-hCcCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEee
Q 037941 127 QLPEEI-GQLTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEML 200 (308)
Q Consensus 127 ~l~~~~-~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 200 (308)
+++..+ ..+++|+.|++++|. +..+.. ..+..+++|++|++.+|++..... =-..-+..+|+|+.||-.
T Consensus 78 ~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~----YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 78 SISEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKN----YRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTT----HHHHHHHH-TT-SEETTE
T ss_pred ccccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhh----HHHHHHHHcChhheeCCE
Confidence 776544 357778888887776 444332 225567777777777777652210 011344566777777644
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.28 E-value=8.9e-12 Score=120.58 Aligned_cols=271 Identities=18% Similarity=0.175 Sum_probs=171.0
Q ss_pred ccchhhHhhhhcCCCCeeEEeecCC--CCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941 24 ISDLREVFEDLMQKDPIAISHPCRD--IQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL 99 (308)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~L~l~~~~--~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 99 (308)
+..+..++.....++++.|-+..|. +..++..+ .++.|++|++++|.-.+.+|..+ +.+-+||+|+++++.+..+
T Consensus 532 ~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL~L~~t~I~~L 610 (889)
T KOG4658|consen 532 NNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYLDLSDTGISHL 610 (889)
T ss_pred ccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcccccCCCcccc
Confidence 4555555655556689999999986 66666643 89999999999988777899988 7899999999999999999
Q ss_pred CCCCCCcccccccccccEEeecCCcC-cccchhhhCcCCCCEEecCCCC-CCCccCcchhcCCCCCceEEccCCcc---c
Q 037941 100 PSTLGDVATVGVLKKLVIFSFRNSHI-EQLPEEIGQLTRLKLLDLSTCS-KLKSIRPNVISNLPRLEELYMGNSFT---H 174 (308)
Q Consensus 100 p~~~~~~~~l~~l~~L~~L~l~~~~i-~~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~---~ 174 (308)
|.+ ++++++|.||++..+.- ..+|.....|++|++|.+.... ..+..-...+.++.+|+.+....... .
T Consensus 611 P~~------l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e 684 (889)
T KOG4658|consen 611 PSG------LGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLE 684 (889)
T ss_pred chH------HHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHh
Confidence 999 99999999999998874 4666767779999999987653 11111111134444444444432221 0
Q ss_pred cc-------------c-c-CCcccchhhhhcCCCCCEEEeeeccCccccchhh--------ccCCceeEeec---cCccc
Q 037941 175 WE-------------V-E-GQNNASLAELNQLSRLTTLEMLILDAQVMPRELF--------SLGLERNKIFL---GDVWS 228 (308)
Q Consensus 175 ~~-------------~-~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~--------~~~L~~l~i~~---~~~~~ 228 (308)
.. . . ......+..+..+.+|+.|.+.++.+.+...... ++++..+.+.. .....
T Consensus 685 ~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~ 764 (889)
T KOG4658|consen 685 DLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLT 764 (889)
T ss_pred hhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccc
Confidence 00 0 0 0112233556778889999999887654322110 12233322222 23344
Q ss_pred ccCCCCcCceEEEeecCchhhhhhHHHH----------hccccee-ecCCccchhhhhhccCCCCCCcccEEeccccccc
Q 037941 229 WTGKYETSRTLKLKLDNRMYLEHGIKML----------LRRTEDL-HLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEI 297 (308)
Q Consensus 229 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~----------~~~L~~L-~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 297 (308)
|.--.++|+.|.+..+.....+.+...- |.++..+ .+.+..+++.+-+ ..-.+++|+.+.+..||++
T Consensus 765 ~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~--~~l~~~~l~~~~ve~~p~l 842 (889)
T KOG4658|consen 765 WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYW--LPLSFLKLEELIVEECPKL 842 (889)
T ss_pred hhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEe--cccCccchhheehhcCccc
Confidence 5556788999998876544432222211 2444444 2444444444322 1233566788888888888
Q ss_pred cccccC
Q 037941 298 LYIVSS 303 (308)
Q Consensus 298 ~~i~~~ 303 (308)
..+|-.
T Consensus 843 ~~~P~~ 848 (889)
T KOG4658|consen 843 GKLPLL 848 (889)
T ss_pred ccCccc
Confidence 877743
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.23 E-value=1.1e-11 Score=97.22 Aligned_cols=112 Identities=30% Similarity=0.404 Sum_probs=46.4
Q ss_pred CCCCccEEEccCCCCCCCCCCCCCccccc-ccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCC
Q 037941 82 GVPSLQVLSLNGFHFPSLPSTLGDVATVG-VLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNL 160 (308)
Q Consensus 82 ~l~~L~~L~l~~~~~~~lp~~~~~~~~l~-~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l 160 (308)
+..+++.|+|.+|.++.+.. ++ .+.+|+.|++++|.|+.++. +..+++|+.|++++|. ++.++.+....+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~-------L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~-I~~i~~~l~~~l 87 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIEN-------LGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNR-ISSISEGLDKNL 87 (175)
T ss_dssp -------------------S---------TT-TT--EEE-TTS--S--TT-----TT--EEE--SS----S-CHHHHHH-
T ss_pred cccccccccccccccccccc-------hhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCC-CCccccchHHhC
Confidence 55678999999999998754 55 58899999999999998876 8889999999999999 778876533568
Q ss_pred CCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCcccc
Q 037941 161 PRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMP 208 (308)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p 208 (308)
++|++|++++|.+.... ....+..+++|+.|++.+|.+..-+
T Consensus 88 p~L~~L~L~~N~I~~l~------~l~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLN------ELEPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp TT--EEE-TTS---SCC------CCGGGGG-TT--EEE-TT-GGGGST
T ss_pred CcCCEEECcCCcCCChH------HhHHHHcCCCcceeeccCCcccchh
Confidence 99999999999988332 2567889999999999999876544
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=4.1e-12 Score=109.65 Aligned_cols=186 Identities=16% Similarity=0.075 Sum_probs=135.1
Q ss_pred hhcCCCCeeEEeecCCCCCCCC--cC-CCCCccEEEecCCCCcC-CCCchhhcCCCCccEEEccCCCCCCCCCCCCCccc
Q 037941 33 DLMQKDPIAISHPCRDIQELPE--KL-ECPKLKLFFLFSEKLSL-VIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVAT 108 (308)
Q Consensus 33 ~~~~~~l~~L~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~ 108 (308)
....++||.+.+.++.+...+. .. .|++++.|++++|-+.. ...-.++..+++|+.|.++.|.+.....+. .
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~----~ 192 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN----T 192 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc----c
Confidence 3578899999999999977664 34 99999999999987652 223355678999999999999887433321 0
Q ss_pred ccccccccEEeecCCcCc--ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchh
Q 037941 109 VGVLKKLVIFSFRNSHIE--QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLA 186 (308)
Q Consensus 109 l~~l~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 186 (308)
-..+++|+.|.++.|+++ ++....-.+++|+.|++.+|..+...... ...+..|+.|++++|.+.+... .-
T Consensus 193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~------~~ 265 (505)
T KOG3207|consen 193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQ------GY 265 (505)
T ss_pred hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCccccccc------cc
Confidence 235789999999999988 66777778999999999999423222222 4567899999999998874433 23
Q ss_pred hhhcCCCCCEEEeeeccCcccc--ch------hhccCCceeEeeccCcccc
Q 037941 187 ELNQLSRLTTLEMLILDAQVMP--RE------LFSLGLERNKIFLGDVWSW 229 (308)
Q Consensus 187 ~l~~l~~L~~L~l~~~~~~~~p--~~------~~~~~L~~l~i~~~~~~~~ 229 (308)
..+.++.|+.|.++.+++.++- +. ..+++|+.|.+..+.+.+|
T Consensus 266 ~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w 316 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDW 316 (505)
T ss_pred ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccc
Confidence 5567899999999998865532 21 2236666666666665444
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=2.3e-12 Score=114.63 Aligned_cols=185 Identities=22% Similarity=0.275 Sum_probs=106.2
Q ss_pred EEeecCCCCCCCCcC---CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEE
Q 037941 42 ISHPCRDIQELPEKL---ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIF 118 (308)
Q Consensus 42 L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L 118 (308)
|.|++-..+++|... .+..-...+++.|.+. ++|.++ ..+..|+.+.+..|.+..+|.. ++.+..|.++
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r~ip~~------i~~L~~lt~l 126 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEA-CAFVSLESLILYHNCIRTIPEA------ICNLEALTFL 126 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccccc-cCchHH-HHHHHHHHHHHHhccceecchh------hhhhhHHHHh
Confidence 455555555544433 4444455556655554 455554 3555666666666666666665 5666666666
Q ss_pred eecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEE
Q 037941 119 SFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLE 198 (308)
Q Consensus 119 ~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 198 (308)
+++.|.++.+|..+..++ |+.|-+++|. ++.+|.+ ++....|.+|+.+.|.+. ..+..++.+..|+.|.
T Consensus 127 ~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~-ig~~~tl~~ld~s~nei~--------slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 127 DLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEE-IGLLPTLAHLDVSKNEIQ--------SLPSQLGYLTSLRDLN 195 (722)
T ss_pred hhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcc-cccchhHHHhhhhhhhhh--------hchHHhhhHHHHHHHH
Confidence 666666666666555544 5556566555 5666665 455566666666666555 3445556666666666
Q ss_pred eeeccCccccchhhccCCceeEeeccCccc---ccCCCCcCceEEEeecC
Q 037941 199 MLILDAQVMPRELFSLGLERNKIFLGDVWS---WTGKYETSRTLKLKLDN 245 (308)
Q Consensus 199 l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~---~~~~~~~L~~L~L~~~~ 245 (308)
+..|.+..+|+......|.+|+++.+.+.. .+..+..|++|.|..|.
T Consensus 196 vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 196 VRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred HhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCC
Confidence 666666666666666666666666555333 34445555555555553
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.3e-11 Score=105.07 Aligned_cols=198 Identities=15% Similarity=0.158 Sum_probs=102.6
Q ss_pred CCCCccEEEccCCCCCCCCC-CCCCcccccccccccEEeecCCcCc---ccchhhhCcCCCCEEecCCCCCCCccCcchh
Q 037941 82 GVPSLQVLSLNGFHFPSLPS-TLGDVATVGVLKKLVIFSFRNSHIE---QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVI 157 (308)
Q Consensus 82 ~l~~L~~L~l~~~~~~~lp~-~~~~~~~l~~l~~L~~L~l~~~~i~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 157 (308)
++++|+...|.++.....+. +. ...+++++.||+++|-+. .+-+....+++|+.|+++.|...-......-
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~-----~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEY-----SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred hHHhhhheeecCccccccchhhh-----hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch
Confidence 46666666676666654432 11 556777777777777655 3334456677777777777653222222222
Q ss_pred cCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeecc-Ccc-ccchhhccCCceeEeeccCcccc-----c
Q 037941 158 SNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILD-AQV-MPRELFSLGLERNKIFLGDVWSW-----T 230 (308)
Q Consensus 158 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~p~~~~~~~L~~l~i~~~~~~~~-----~ 230 (308)
..+++|+.|.+++|.+++. ....-+..+|.|+.|.+..|. +.. -.+.-....|+.|++..+.+.++ .
T Consensus 194 ~~l~~lK~L~l~~CGls~k------~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~ 267 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWK------DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKV 267 (505)
T ss_pred hhhhhhheEEeccCCCCHH------HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccc
Confidence 3456677777777776622 223444566777777777663 111 11111125566666655554332 3
Q ss_pred CCCCcCceEEEeecCchhh--hhh----HHHHhcccceeecCCccchhhhhhccCCCCCCcccEEec
Q 037941 231 GKYETSRTLKLKLDNRMYL--EHG----IKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLV 291 (308)
Q Consensus 231 ~~~~~L~~L~L~~~~~~~~--~~~----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 291 (308)
+.++.|..|.++.+..... +++ ....|++|++|.+.. |.++++...-.....++|+.|.+
T Consensus 268 ~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 268 GTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred ccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhc
Confidence 4566666666665543322 111 112356777777766 44444322111123445555543
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.03 E-value=1.3e-11 Score=109.87 Aligned_cols=156 Identities=22% Similarity=0.303 Sum_probs=117.3
Q ss_pred CCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccccc
Q 037941 38 DPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLV 116 (308)
Q Consensus 38 ~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~ 116 (308)
.+..+.+..|.+..+|..+ ++..|++++++.|++. .+|..++ .--|++|-+++|++..+|.+ ++.+..|.
T Consensus 99 ~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkvli~sNNkl~~lp~~------ig~~~tl~ 169 (722)
T KOG0532|consen 99 SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKVLIVSNNKLTSLPEE------IGLLPTLA 169 (722)
T ss_pred HHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhh--cCcceeEEEecCccccCCcc------cccchhHH
Confidence 3444555555666666666 7777888888888776 5566552 45578888888888888888 77778888
Q ss_pred EEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCE
Q 037941 117 IFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTT 196 (308)
Q Consensus 117 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 196 (308)
.|+.++|.+..+|..++.+.+|+.|++..|. +..+|++ .. .-.|..||++.|++. ..+..|..|+.|++
T Consensus 170 ~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~-~LpLi~lDfScNkis--------~iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 170 HLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LC-SLPLIRLDFSCNKIS--------YLPVDFRKMRHLQV 238 (722)
T ss_pred HhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-Hh-CCceeeeecccCcee--------ecchhhhhhhhhee
Confidence 8888888888888888888888888888887 6677776 44 345778888888877 45568888888888
Q ss_pred EEeeeccCccccchhhc
Q 037941 197 LEMLILDAQVMPRELFS 213 (308)
Q Consensus 197 L~l~~~~~~~~p~~~~~ 213 (308)
|-+.+|.+++=|..++.
T Consensus 239 l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 239 LQLENNPLQSPPAQICE 255 (722)
T ss_pred eeeccCCCCCChHHHHh
Confidence 88888888887777765
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=2.9e-10 Score=102.36 Aligned_cols=105 Identities=30% Similarity=0.406 Sum_probs=48.6
Q ss_pred CCCCccEEEecCCCCcCCCCchhhcCCC-CccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCc
Q 037941 57 ECPKLKLFFLFSEKLSLVIPDLFFEGVP-SLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQL 135 (308)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l 135 (308)
..+.++.+.+.++.++ .++... ..+. +|+.|+++.|.+..+|.. ++.+++|+.|+++.|.+.++|...+..
T Consensus 114 ~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~------~~~l~~L~~L~l~~N~l~~l~~~~~~~ 185 (394)
T COG4886 114 ELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIESLPSP------LRNLPNLKNLDLSFNDLSDLPKLLSNL 185 (394)
T ss_pred cccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhhhhhh------hhccccccccccCCchhhhhhhhhhhh
Confidence 3444555555554444 233222 1221 455555555555554433 444555555555555555555444445
Q ss_pred CCCCEEecCCCCCCCccCcchhcCCCCCceEEccCC
Q 037941 136 TRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNS 171 (308)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 171 (308)
++|+.|++++|. +..+|.. +..+..|+.+.+++|
T Consensus 186 ~~L~~L~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N 219 (394)
T COG4886 186 SNLNNLDLSGNK-ISDLPPE-IELLSALEELDLSNN 219 (394)
T ss_pred hhhhheeccCCc-cccCchh-hhhhhhhhhhhhcCC
Confidence 555555555544 4444442 223333555555544
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=3.7e-10 Score=101.69 Aligned_cols=155 Identities=25% Similarity=0.343 Sum_probs=70.2
Q ss_pred CCCeeEEeecCCCCCCCCcC-CCC-CccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccc
Q 037941 37 KDPIAISHPCRDIQELPEKL-ECP-KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKK 114 (308)
Q Consensus 37 ~~l~~L~l~~~~~~~~~~~~-~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~ 114 (308)
+.++.+++.++.+.++++.. ... +|+.|++++|.+. .++..+ +.++.|+.|++++|.+..+|.. .+.+++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~~N~l~~l~~~------~~~~~~ 187 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLSFNDLSDLPKL------LSNLSN 187 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhh-hccccccccccCCchhhhhhhh------hhhhhh
Confidence 34445555555555554444 221 4555555555443 222111 3455555555555555555543 334455
Q ss_pred ccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCC
Q 037941 115 LVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRL 194 (308)
Q Consensus 115 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L 194 (308)
|+.|++++|.++.+|..+.....|+.+.+++|. ....+.. +.++.++..+.+.+|++. ..+..++.++.+
T Consensus 188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~-~~~~~~l~~l~l~~n~~~--------~~~~~~~~l~~l 257 (394)
T COG4886 188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSS-LSNLKNLSGLELSNNKLE--------DLPESIGNLSNL 257 (394)
T ss_pred hhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchh-hhhcccccccccCCceee--------eccchhcccccc
Confidence 555555555555555544444445555555543 1122222 344444444444444433 112333444445
Q ss_pred CEEEeeeccCccccc
Q 037941 195 TTLEMLILDAQVMPR 209 (308)
Q Consensus 195 ~~L~l~~~~~~~~p~ 209 (308)
+.|+++.|.+..++.
T Consensus 258 ~~L~~s~n~i~~i~~ 272 (394)
T COG4886 258 ETLDLSNNQISSISS 272 (394)
T ss_pred ceecccccccccccc
Confidence 555555554444444
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.96 E-value=6.1e-11 Score=98.15 Aligned_cols=133 Identities=15% Similarity=0.138 Sum_probs=60.1
Q ss_pred CCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCC
Q 037941 58 CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTR 137 (308)
Q Consensus 58 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~ 137 (308)
+..|+++++++|.++ .+..++ .-++.+++|++++|.+..+-. +..+++|..||+++|.++++...-.++-+
T Consensus 283 Wq~LtelDLS~N~I~-~iDESv-KL~Pkir~L~lS~N~i~~v~n-------La~L~~L~~LDLS~N~Ls~~~Gwh~KLGN 353 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESV-KLAPKLRRLILSQNRIRTVQN-------LAELPQLQLLDLSGNLLAECVGWHLKLGN 353 (490)
T ss_pred Hhhhhhccccccchh-hhhhhh-hhccceeEEeccccceeeehh-------hhhcccceEeecccchhHhhhhhHhhhcC
Confidence 334444455554443 222222 234445555555554443333 34445555555555555444443444445
Q ss_pred CCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCcccc
Q 037941 138 LKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMP 208 (308)
Q Consensus 138 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p 208 (308)
.+.|.++.|. ++.+.. ++++-+|..||+.+|+|.... ....++++|.|+++.+.+|.+..+|
T Consensus 354 IKtL~La~N~-iE~LSG--L~KLYSLvnLDl~~N~Ie~ld------eV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 354 IKTLKLAQNK-IETLSG--LRKLYSLVNLDLSSNQIEELD------EVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred Eeeeehhhhh-Hhhhhh--hHhhhhheeccccccchhhHH------HhcccccccHHHHHhhcCCCccccc
Confidence 5555555544 444433 444445555555555444111 1233445555555555555544443
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.93 E-value=3.9e-10 Score=95.04 Aligned_cols=181 Identities=15% Similarity=0.063 Sum_probs=103.6
Q ss_pred ccccccEEeecCCcCc-ccc----hhhhCcCCCCEEecCCCCCCCccCcch-------------hcCCCCCceEEccCCc
Q 037941 111 VLKKLVIFSFRNSHIE-QLP----EEIGQLTRLKLLDLSTCSKLKSIRPNV-------------ISNLPRLEELYMGNSF 172 (308)
Q Consensus 111 ~l~~L~~L~l~~~~i~-~l~----~~~~~l~~L~~L~l~~~~~~~~~~~~~-------------~~~l~~L~~L~l~~~~ 172 (308)
..++|++++++.|-+. .-+ .-+..++.|++|++.+|. +.....+. .+.-+.|+++....|+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr 168 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR 168 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc
Confidence 4456777777776554 221 224556677777777776 44332221 3445678888888887
Q ss_pred ccccccCCcccchhhhhcCCCCCEEEeeeccCcc--c---cchhh-ccCCceeEeeccCccc--------ccCCCCcCce
Q 037941 173 THWEVEGQNNASLAELNQLSRLTTLEMLILDAQV--M---PRELF-SLGLERNKIFLGDVWS--------WTGKYETSRT 238 (308)
Q Consensus 173 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~---p~~~~-~~~L~~l~i~~~~~~~--------~~~~~~~L~~ 238 (308)
+... +...+...+..++.|+.+.+..|.+.. + ...+. .++|+.|++.++.+.. ..+.++.|+.
T Consensus 169 len~---ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 169 LENG---GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred cccc---cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 6622 222334566677788888888775421 1 11111 1677777776665432 2445567777
Q ss_pred EEEeecCc-----hhhhhhHHHHhcccceeecCCccchhhhhhcc--CCCCCCcccEEeccccc
Q 037941 239 LKLKLDNR-----MYLEHGIKMLLRRTEDLHLDKLNGLQNVLHEL--DGEGFPRLKHLLVQNAS 295 (308)
Q Consensus 239 L~L~~~~~-----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~c~ 295 (308)
++++.|.. ......+...+|+|+.|.+.++.-.++....+ .....|.|+.|++.+|.
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 77766532 22244444556889999988743333222111 11337889999998883
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.91 E-value=1.1e-10 Score=96.69 Aligned_cols=126 Identities=20% Similarity=0.222 Sum_probs=89.3
Q ss_pred CCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCC
Q 037941 82 GVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLP 161 (308)
Q Consensus 82 ~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 161 (308)
..+.|..+|+++|.++.+..+ ..-.++++.|++++|.+..+.. +..+++|+.|++++|. +..+... -.++.
T Consensus 282 TWq~LtelDLS~N~I~~iDES------vKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gw-h~KLG 352 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDES------VKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGW-HLKLG 352 (490)
T ss_pred hHhhhhhccccccchhhhhhh------hhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhh-Hhhhc
Confidence 446688888888888877776 6777888888888888887766 7788888888888887 5555543 45677
Q ss_pred CCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccc--hhhc-cCCceeEeeccC
Q 037941 162 RLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPR--ELFS-LGLERNKIFLGD 225 (308)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~--~~~~-~~L~~l~i~~~~ 225 (308)
|++.|.+++|.+. ....++.+-.|..||+.+|++..+.. .+.. +.|+.+.+.++.
T Consensus 353 NIKtL~La~N~iE---------~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 353 NIKTLKLAQNKIE---------TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred CEeeeehhhhhHh---------hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 8888888888766 23456666778888888887654432 2222 555555555444
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.84 E-value=2.7e-09 Score=69.05 Aligned_cols=59 Identities=27% Similarity=0.423 Sum_probs=27.3
Q ss_pred CccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCc
Q 037941 60 KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSH 124 (308)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~ 124 (308)
+|++|++++|.+. .++...|.++++|++|++++|.+..+|+.. +..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~-----f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDA-----FSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTT-----TTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHH-----HcCCCCCCEEeCcCCc
Confidence 4444455544444 334434444444555555444444444432 4444444444444443
No 37
>PLN03150 hypothetical protein; Provisional
Probab=98.80 E-value=1.9e-08 Score=95.38 Aligned_cols=104 Identities=23% Similarity=0.309 Sum_probs=67.0
Q ss_pred ccEEEccCCCCC-CCCCCCCCcccccccccccEEeecCCcCc-ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCC
Q 037941 86 LQVLSLNGFHFP-SLPSTLGDVATVGVLKKLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRL 163 (308)
Q Consensus 86 L~~L~l~~~~~~-~lp~~~~~~~~l~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 163 (308)
+..|+|++|.+. .+|.. ++.+++|++|++++|.+. .+|..++.+++|+.|++++|.....+|.. ++++++|
T Consensus 420 v~~L~L~~n~L~g~ip~~------i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L 492 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPND------ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSL 492 (623)
T ss_pred EEEEECCCCCccccCCHH------HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCC
Confidence 566677777766 55665 667777777777777766 66766777777777777777644456655 6677777
Q ss_pred ceEEccCCcccccccCCcccchhhhhc-CCCCCEEEeeecc
Q 037941 164 EELYMGNSFTHWEVEGQNNASLAELNQ-LSRLTTLEMLILD 203 (308)
Q Consensus 164 ~~L~l~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~ 203 (308)
+.|++++|.+.+..+ ..+.. ..++..+++.+|.
T Consensus 493 ~~L~Ls~N~l~g~iP-------~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 493 RILNLNGNSLSGRVP-------AALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CEEECcCCcccccCC-------hHHhhccccCceEEecCCc
Confidence 777777776663332 33332 2345566666664
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=9.3e-09 Score=66.49 Aligned_cols=58 Identities=24% Similarity=0.471 Sum_probs=30.4
Q ss_pred CccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCC
Q 037941 85 SLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCS 147 (308)
Q Consensus 85 ~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~ 147 (308)
+|++|++++|.+..+|+.. +..+++|++|++++|.++.++ ..+..+++|+.|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~-----f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDS-----FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTT-----TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHH-----HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4555555555555555443 555555555555555555444 234555555555555543
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.70 E-value=4.6e-08 Score=92.79 Aligned_cols=107 Identities=21% Similarity=0.337 Sum_probs=92.9
Q ss_pred CccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCcccccccccccEEeecCCcCc-ccchhhhCcCC
Q 037941 60 KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVLKKLVIFSFRNSHIE-QLPEEIGQLTR 137 (308)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~~l~~L~~L~l~~~~i~-~l~~~~~~l~~ 137 (308)
.++.|++.+|.+.+.+|..+ ..+++|+.|++++|.+. .+|.. ++.+++|++|++++|.++ .+|..++.+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~------~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPS------LGSITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChH------HhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 47889999999998888886 68999999999999998 78887 899999999999999998 89999999999
Q ss_pred CCEEecCCCCCCCccCcchhcC-CCCCceEEccCCccc
Q 037941 138 LKLLDLSTCSKLKSIRPNVISN-LPRLEELYMGNSFTH 174 (308)
Q Consensus 138 L~~L~l~~~~~~~~~~~~~~~~-l~~L~~L~l~~~~~~ 174 (308)
|+.|++++|.....+|.. +.. ..++..+++.+|...
T Consensus 492 L~~L~Ls~N~l~g~iP~~-l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAA-LGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCEEECcCCcccccCChH-HhhccccCceEEecCCccc
Confidence 999999999977788887 444 356778888887644
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.60 E-value=4.4e-09 Score=95.16 Aligned_cols=186 Identities=22% Similarity=0.231 Sum_probs=93.4
Q ss_pred CCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccccc
Q 037941 38 DPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLV 116 (308)
Q Consensus 38 ~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~ 116 (308)
.+..+.+..+.+..+-... .+++++.+++..|.+.. +... ...+++|++|++++|.++.+.. +..++.|+
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~-i~~~-l~~~~~L~~L~ls~N~I~~i~~-------l~~l~~L~ 143 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEK-IENL-LSSLVNLQVLDLSFNKITKLEG-------LSTLTLLK 143 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccchhh-cccc-hhhhhcchheeccccccccccc-------hhhccchh
Confidence 3344445555554422222 56666666666666552 2221 2456666666666666665555 55566666
Q ss_pred EEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCC
Q 037941 117 IFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLT 195 (308)
Q Consensus 117 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~ 195 (308)
.|++.+|.|+.+.. +..+.+|+.+++++|. +..++. . ...+.+++.+++.+|.+. .+..+..+..+.
T Consensus 144 ~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n~i~---------~i~~~~~~~~l~ 211 (414)
T KOG0531|consen 144 ELNLSGNLISDISG-LESLKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGNSIR---------EIEGLDLLKKLV 211 (414)
T ss_pred hheeccCcchhccC-CccchhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCCchh---------cccchHHHHHHH
Confidence 66666666665555 4446666666666665 444443 1 245566666666666555 112222333333
Q ss_pred EEEeeeccCccccchhhccC--CceeEeeccCccc---ccCCCCcCceEEEeec
Q 037941 196 TLEMLILDAQVMPRELFSLG--LERNKIFLGDVWS---WTGKYETSRTLKLKLD 244 (308)
Q Consensus 196 ~L~l~~~~~~~~p~~~~~~~--L~~l~i~~~~~~~---~~~~~~~L~~L~L~~~ 244 (308)
.+++..|.+..+-....... |+.+++..+.+.. ....+..+..+++..+
T Consensus 212 ~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 212 LLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSN 265 (414)
T ss_pred HhhcccccceeccCcccchhHHHHHHhcccCccccccccccccccccccchhhc
Confidence 33555554443332222222 4555554444332 2344455555555444
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.54 E-value=3.3e-08 Score=83.63 Aligned_cols=227 Identities=15% Similarity=0.084 Sum_probs=151.7
Q ss_pred hcCCCCeeEEeecCCCC-----CCCCcC-CCCCccEEEecCCCCcC----CCCchh------hcCCCCccEEEccCCCCC
Q 037941 34 LMQKDPIAISHPCRDIQ-----ELPEKL-ECPKLKLFFLFSEKLSL----VIPDLF------FEGVPSLQVLSLNGFHFP 97 (308)
Q Consensus 34 ~~~~~l~~L~l~~~~~~-----~~~~~~-~~~~L~~L~l~~~~~~~----~~~~~~------~~~l~~L~~L~l~~~~~~ 97 (308)
.....++.+++++|.+. .+.+.. .-++|+..+++.- +++ .+|+.+ +-+.++|++++||+|-|.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 45788999999999882 223333 6668888887753 222 333321 235679999999999887
Q ss_pred -CCCCCCCCcccccccccccEEeecCCcCcccch--------------hhhCcCCCCEEecCCCCCCCccCcc----hhc
Q 037941 98 -SLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE--------------EIGQLTRLKLLDLSTCSKLKSIRPN----VIS 158 (308)
Q Consensus 98 -~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~--------------~~~~l~~L~~L~l~~~~~~~~~~~~----~~~ 158 (308)
+-+..+++ -+.++..|++|.+.+|++..... .+..-++|+.+....|. +...+.. .+.
T Consensus 106 ~~g~~~l~~--ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~ 182 (382)
T KOG1909|consen 106 PKGIRGLEE--LLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQ 182 (382)
T ss_pred ccchHHHHH--HHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHH
Confidence 33332111 15568899999999998773221 13456789999999987 6666542 366
Q ss_pred CCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccc-----cchhhc-cCCceeEeeccCccc----
Q 037941 159 NLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVM-----PRELFS-LGLERNKIFLGDVWS---- 228 (308)
Q Consensus 159 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----p~~~~~-~~L~~l~i~~~~~~~---- 228 (308)
..+.|+.+.+..|.|. +.++......+..+++|+.|++.+|-++.- ...++. ++|+.+++.++-+..
T Consensus 183 ~~~~leevr~~qN~I~---~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~ 259 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIR---PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAI 259 (382)
T ss_pred hccccceEEEeccccc---CchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHH
Confidence 7789999999999887 112234446788999999999999975431 111111 667777776554332
Q ss_pred -----ccCCCCcCceEEEeecCchhh-----hhhHHHHhcccceeecCCc
Q 037941 229 -----WTGKYETSRTLKLKLDNRMYL-----EHGIKMLLRRTEDLHLDKL 268 (308)
Q Consensus 229 -----~~~~~~~L~~L~L~~~~~~~~-----~~~~~~~~~~L~~L~l~~~ 268 (308)
.-...|+|+.+.+.+|..... ...+.. -|.|++|.++++
T Consensus 260 a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN 308 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCcc
Confidence 234588999999999876543 222223 388999999984
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=2.9e-09 Score=88.23 Aligned_cols=172 Identities=19% Similarity=0.068 Sum_probs=109.4
Q ss_pred cccEEeecCCcCc--ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCc-ccccccCCcccchhhhhc
Q 037941 114 KLVIFSFRNSHIE--QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSF-THWEVEGQNNASLAELNQ 190 (308)
Q Consensus 114 ~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~ 190 (308)
.|++||++...|+ .+-..++.+++|+.|.+-++..-..+... +++-.+|+.++++.|. ++ ....--.+.+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t------~n~~~ll~~s 258 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFT------ENALQLLLSS 258 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-Hhccccceeeccccccccc------hhHHHHHHHh
Confidence 4778888877776 55555677777888877777633333333 5666778888887764 22 0111234567
Q ss_pred CCCCCEEEeeeccCc-cccchh-h--ccCCceeEeecc-------CcccccCCCCcCceEEEeecCchhhhhhHH--HHh
Q 037941 191 LSRLTTLEMLILDAQ-VMPREL-F--SLGLERNKIFLG-------DVWSWTGKYETSRTLKLKLDNRMYLEHGIK--MLL 257 (308)
Q Consensus 191 l~~L~~L~l~~~~~~-~~p~~~-~--~~~L~~l~i~~~-------~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~--~~~ 257 (308)
+..|+.|.++++... +...-. . .++|+.|+++.. .+......++++..|+|+.+..... +.+. ..|
T Consensus 259 cs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf 337 (419)
T KOG2120|consen 259 CSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKF 337 (419)
T ss_pred hhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhc
Confidence 788888888887532 111111 1 166666665422 2233467899999999999766553 2222 236
Q ss_pred cccceeecCCccchhhhhhccCCCCCCcccEEecccc
Q 037941 258 RRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNA 294 (308)
Q Consensus 258 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 294 (308)
+.|++|.+++|..+--... +...+.|.|.+|++.+|
T Consensus 338 ~~L~~lSlsRCY~i~p~~~-~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 338 NYLQHLSLSRCYDIIPETL-LELNSKPSLVYLDVFGC 373 (419)
T ss_pred chheeeehhhhcCCChHHe-eeeccCcceEEEEeccc
Confidence 8999999999987543222 33477899999999887
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.53 E-value=1.4e-08 Score=91.99 Aligned_cols=128 Identities=19% Similarity=0.226 Sum_probs=99.6
Q ss_pred hcCCCCeeEEeecCCCCCCCC-cCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941 34 LMQKDPIAISHPCRDIQELPE-KLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL 112 (308)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l 112 (308)
....+++.+++.+|.+..+.. ...+++|++|++++|.++...+ +..+..|+.|++++|.+..+.. +..+
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~l~~N~i~~~~~-------~~~l 161 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKELNLSGNLISDISG-------LESL 161 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccc---hhhccchhhheeccCcchhccC-------Cccc
Confidence 457899999999999988888 4489999999999999884433 2567779999999999998877 6779
Q ss_pred ccccEEeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccc
Q 037941 113 KKLVIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTH 174 (308)
Q Consensus 113 ~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 174 (308)
+.|+.+++++|.+..+... ...+.+++.+++.+|. +..+.. +..+..+..+++..|.+.
T Consensus 162 ~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~-i~~i~~--~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS-IREIEG--LDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred hhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc-hhcccc--hHHHHHHHHhhcccccce
Confidence 9999999999999977775 5788899999999887 444432 334444444455555444
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.42 E-value=3.3e-09 Score=97.42 Aligned_cols=152 Identities=21% Similarity=0.177 Sum_probs=99.5
Q ss_pred cCCCCeeEEeecCCCCCCCCc---------------------------------CCCCCccEEEecCCCCcCCCCchhhc
Q 037941 35 MQKDPIAISHPCRDIQELPEK---------------------------------LECPKLKLFFLFSEKLSLVIPDLFFE 81 (308)
Q Consensus 35 ~~~~l~~L~l~~~~~~~~~~~---------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~ 81 (308)
.++.||+|-+.++++..+-.. ...-.|.+.++++|.++ . -++.++
T Consensus 107 pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~-mD~SLq 184 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L-MDESLQ 184 (1096)
T ss_pred cccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h-HHHHHH
Confidence 478999999998886322111 11223444455555543 1 233335
Q ss_pred CCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCC
Q 037941 82 GVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLP 161 (308)
Q Consensus 82 ~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 161 (308)
-++.++.|+|+.|++.++-. +..+++|++||+++|.+..+|..-..-.+|+.|++++|. ++.+-. +.++.
T Consensus 185 ll~ale~LnLshNk~~~v~~-------Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~-l~tL~g--ie~Lk 254 (1096)
T KOG1859|consen 185 LLPALESLNLSHNKFTKVDN-------LRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNA-LTTLRG--IENLK 254 (1096)
T ss_pred HHHHhhhhccchhhhhhhHH-------HHhcccccccccccchhccccccchhhhhheeeeecccH-HHhhhh--HHhhh
Confidence 67788888888888876653 778888888888888888777632222348888888887 666654 67888
Q ss_pred CCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccC
Q 037941 162 RLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDA 204 (308)
Q Consensus 162 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 204 (308)
+|+.||++.|.+.+... ..-+..+..|+.|-+.+|.+
T Consensus 255 sL~~LDlsyNll~~hse------L~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 255 SLYGLDLSYNLLSEHSE------LEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhccchhHhhhhcchh------hhHHHHHHHHHHHhhcCCcc
Confidence 88888888887774322 34455666677777777753
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=7.8e-08 Score=79.87 Aligned_cols=182 Identities=18% Similarity=0.149 Sum_probs=95.1
Q ss_pred cccccEEeecCCcCc---ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhh
Q 037941 112 LKKLVIFSFRNSHIE---QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAEL 188 (308)
Q Consensus 112 l~~L~~L~l~~~~i~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l 188 (308)
...++++|+.+|.|+ ++...+..++.|++|+++.|+.-..+... -....+|+.|-+.++.+.+.. .-..+
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l-p~p~~nl~~lVLNgT~L~w~~------~~s~l 142 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL-PLPLKNLRVLVLNGTGLSWTQ------STSSL 142 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC-cccccceEEEEEcCCCCChhh------hhhhh
Confidence 466788888888777 55555677888888888888733322221 124567888888887766322 22455
Q ss_pred hcCCCCCEEEeeeccCccccchh-----hccCCceeEeeccCcccc------cCCCCcCceEEEeecCchhh--hhhHHH
Q 037941 189 NQLSRLTTLEMLILDAQVMPREL-----FSLGLERNKIFLGDVWSW------TGKYETSRTLKLKLDNRMYL--EHGIKM 255 (308)
Q Consensus 189 ~~l~~L~~L~l~~~~~~~~p~~~-----~~~~L~~l~i~~~~~~~~------~~~~~~L~~L~L~~~~~~~~--~~~~~~ 255 (308)
..+|.++.|+++.|....+-..- -.+.+.++.+..+....| ...+|++..+-+..|...+. ..+. .
T Consensus 143 ~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~s-e 221 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGS-E 221 (418)
T ss_pred hcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccC-C
Confidence 67777888888877533221100 002333333332222222 22345555555544422211 1111 1
Q ss_pred HhcccceeecCCccchhhhhhccCCCCCCcccEEecccccccccccc
Q 037941 256 LLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVS 302 (308)
Q Consensus 256 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~ 302 (308)
.||.+..|.+.. +.+.++...-...+||.|..|.+.+.|-++.+-.
T Consensus 222 ~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 222 PFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred CCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 235555555544 4444433322235566666666666666555443
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=1.6e-08 Score=83.84 Aligned_cols=174 Identities=14% Similarity=0.101 Sum_probs=89.8
Q ss_pred CccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCcccccccccccEEeecCCc-Ccc--cchhhhCc
Q 037941 60 KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVLKKLVIFSFRNSH-IEQ--LPEEIGQL 135 (308)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~~l~~L~~L~l~~~~-i~~--l~~~~~~l 135 (308)
.|+.++++...++..-...+++.+.+|+-|.+.++.+. .+-.. +.+-.+|+.|+++.+. +++ ..-.+..+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~------iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT------IAKNSNLVRLNLSMCSGFTENALQLLLSSC 259 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH------HhccccceeeccccccccchhHHHHHHHhh
Confidence 46666666666554333444556666777777666665 23333 5555667777777663 552 22335667
Q ss_pred CCCCEEecCCCCCCCccCcchhcCC-CCCceEEccCCcccccccCCcccchhhh-hcCCCCCEEEeeecc-Ccc--ccch
Q 037941 136 TRLKLLDLSTCSKLKSIRPNVISNL-PRLEELYMGNSFTHWEVEGQNNASLAEL-NQLSRLTTLEMLILD-AQV--MPRE 210 (308)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~-~~~--~p~~ 210 (308)
+.|+.|++++|....+.-..++.+. ++|+.|++++++-.- ..+.+..+ ..+++|.+||++++- ++. +...
T Consensus 260 s~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl-----~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~ 334 (419)
T KOG2120|consen 260 SRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL-----QKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 334 (419)
T ss_pred hhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh-----hhhHHHHHHHhCCceeeeccccccccCchHHHHH
Confidence 7777777777764433322223332 366777776664220 01122222 467777788877763 111 1111
Q ss_pred hhccCCceeEeeccCccc-----ccCCCCcCceEEEeec
Q 037941 211 LFSLGLERNKIFLGDVWS-----WTGKYETSRTLKLKLD 244 (308)
Q Consensus 211 ~~~~~L~~l~i~~~~~~~-----~~~~~~~L~~L~L~~~ 244 (308)
+.+..|+++.++.+.... .....|.|.+|+.-++
T Consensus 335 ~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 335 FKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 222555555543322111 1345555666655443
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.27 E-value=5.9e-07 Score=53.47 Aligned_cols=34 Identities=32% Similarity=0.526 Sum_probs=16.6
Q ss_pred cccEEeecCCcCcccchhhhCcCCCCEEecCCCC
Q 037941 114 KLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCS 147 (308)
Q Consensus 114 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~ 147 (308)
+|++|++++|.++++|..++++++|+.|++++|.
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence 4455555555555555445555555555555554
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.26 E-value=1.5e-06 Score=51.74 Aligned_cols=41 Identities=22% Similarity=0.386 Sum_probs=30.6
Q ss_pred CCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccch
Q 037941 84 PSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE 130 (308)
Q Consensus 84 ~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~ 130 (308)
++|++|++++|.++.+|+. ++++++|++|++++|++++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~------l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPE------LSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGH------GTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCch------HhCCCCCCEEEecCCCCCCCcC
Confidence 4678888888888888776 7788888888888888776654
No 49
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.23 E-value=4.1e-07 Score=86.52 Aligned_cols=136 Identities=20% Similarity=0.213 Sum_probs=69.9
Q ss_pred CCccEEEecCCCC-cCCCCchhhcCCCCccEEEccCCCCC--CCCCCCCCcccccccccccEEeecCCcCcccchhhhCc
Q 037941 59 PKLKLFFLFSEKL-SLVIPDLFFEGVPSLQVLSLNGFHFP--SLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQL 135 (308)
Q Consensus 59 ~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~--~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l 135 (308)
.+|++|+++|... ....+..+...+|.|+.|.+++-.+. ++-.- ..++++|+.||+++++++.+ ..++.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~l------c~sFpNL~sLDIS~TnI~nl-~GIS~L 194 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQL------CASFPNLRSLDISGTNISNL-SGISRL 194 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHH------hhccCccceeecCCCCccCc-HHHhcc
Confidence 4566666666442 22333444345666666666654443 11222 34567777777777777766 446777
Q ss_pred CCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeecc
Q 037941 136 TRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILD 203 (308)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 203 (308)
++|+.|.+.+-. ++.... ..+.++++|++||++..+...... -.....+--..+|+|+.||.+++.
T Consensus 195 knLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~-ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 195 KNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTK-IIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred ccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchH-HHHHHHHhcccCccccEEecCCcc
Confidence 777777666533 222111 114566777777776554331110 000001111346677777777654
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.21 E-value=1.8e-06 Score=71.03 Aligned_cols=144 Identities=20% Similarity=0.202 Sum_probs=92.7
Q ss_pred CCCCccEEEecCCCCcCCCCchh---hcCCCCccEEEccCCCCC----CCCCCC-CCcccccccccccEEeecCCcCc-c
Q 037941 57 ECPKLKLFFLFSEKLSLVIPDLF---FEGVPSLQVLSLNGFHFP----SLPSTL-GDVATVGVLKKLVIFSFRNSHIE-Q 127 (308)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~---~~~l~~L~~L~l~~~~~~----~lp~~~-~~~~~l~~l~~L~~L~l~~~~i~-~ 127 (308)
.+..++.+++++|.+...-...+ ...-.+|++.+++.-... ++|..+ .-+..+-++++|+..+++.|.+. +
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 57788999999998763211111 235677888888765433 233321 00122556889999999999876 4
Q ss_pred cchh----hhCcCCCCEEecCCCCCCCccCcchh-------------cCCCCCceEEccCCcccccccCCcccchhhhhc
Q 037941 128 LPEE----IGQLTRLKLLDLSTCSKLKSIRPNVI-------------SNLPRLEELYMGNSFTHWEVEGQNNASLAELNQ 190 (308)
Q Consensus 128 l~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~-------------~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 190 (308)
.|.. |+.-+.|.||++++|. +..+..+-+ .+-+.|+++.+..|++. .|+...+...+.+
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle---ngs~~~~a~~l~s 183 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE---NGSKELSAALLES 183 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc---cCcHHHHHHHHHh
Confidence 4433 6677889999999988 655543322 34577888888888776 2222333445666
Q ss_pred CCCCCEEEeeeccC
Q 037941 191 LSRLTTLEMLILDA 204 (308)
Q Consensus 191 l~~L~~L~l~~~~~ 204 (308)
..+|+.+.+.+|.+
T Consensus 184 h~~lk~vki~qNgI 197 (388)
T COG5238 184 HENLKEVKIQQNGI 197 (388)
T ss_pred hcCceeEEeeecCc
Confidence 67888888888854
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.20 E-value=1.6e-07 Score=69.33 Aligned_cols=112 Identities=16% Similarity=0.246 Sum_probs=85.8
Q ss_pred CCCCeeEEeecCCCCCCCCcC----CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccc
Q 037941 36 QKDPIAISHPCRDIQELPEKL----ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGV 111 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~ 111 (308)
-..+..+++++|.+..++... ...+|+..++++|.+. .+|..+..+++.+..+++++|.++.+|.+ +..
T Consensus 26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE------~Aa 98 (177)
T KOG4579|consen 26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEE------LAA 98 (177)
T ss_pred HHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHH------Hhh
Confidence 455667888888776555544 5566777788888776 66777666777888888888888888888 788
Q ss_pred cccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcc
Q 037941 112 LKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPN 155 (308)
Q Consensus 112 l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 155 (308)
++.|+.++++.|.+...|..+..+.++-.|+...|. +..+|..
T Consensus 99 m~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 99 MPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred hHHhhhcccccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 888888888888888888877778888888888877 6667765
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.19 E-value=9.8e-07 Score=83.97 Aligned_cols=133 Identities=20% Similarity=0.267 Sum_probs=99.6
Q ss_pred hcCCCCeeEEeecCCC--CCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccc
Q 037941 34 LMQKDPIAISHPCRDI--QELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATV 109 (308)
Q Consensus 34 ~~~~~l~~L~l~~~~~--~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l 109 (308)
....+|++|++++... ...+... .+|.|++|.+.+-.+...--...+.++++|..||+++++++.+ .+ +
T Consensus 119 ~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~G------I 191 (699)
T KOG3665|consen 119 ESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SG------I 191 (699)
T ss_pred HHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HH------H
Confidence 3467899999988665 4455444 8999999999997765332234557899999999999999988 34 8
Q ss_pred cccccccEEeecCCcCcccc--hhhhCcCCCCEEecCCCCCCCccCc------chhcCCCCCceEEccCCccc
Q 037941 110 GVLKKLVIFSFRNSHIEQLP--EEIGQLTRLKLLDLSTCSKLKSIRP------NVISNLPRLEELYMGNSFTH 174 (308)
Q Consensus 110 ~~l~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~------~~~~~l~~L~~L~l~~~~~~ 174 (308)
+.+++|+.|.+.+=.+..-. ..+..+++|++||++..... ..+. +--..+++|+.||.+++.+.
T Consensus 192 S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchh
Confidence 99999999988776666333 45889999999999986532 2221 00234899999999988776
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.17 E-value=1.1e-05 Score=71.46 Aligned_cols=59 Identities=14% Similarity=0.272 Sum_probs=27.0
Q ss_pred CCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCC-CCCCCCCCCCCcccccccccccEEeecCC-cCcccc
Q 037941 58 CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGF-HFPSLPSTLGDVATVGVLKKLVIFSFRNS-HIEQLP 129 (308)
Q Consensus 58 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~~~~~~~l~~l~~L~~L~l~~~-~i~~l~ 129 (308)
+.+++.|++++|.++ .+|. --.+|+.|.+++| .+..+|.. + ..+|++|++++| .+..+|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~------L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGS------I--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCch------h--hhhhhheEccCcccccccc
Confidence 455555665555443 3331 1123555555543 33344443 2 234555555555 344444
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.07 E-value=8.5e-08 Score=82.99 Aligned_cols=250 Identities=18% Similarity=0.120 Sum_probs=141.3
Q ss_pred CCCeeEEeecCCC---CCCCCcC-CCCCccEEEecCCCC-cCCCCchhhcCCCCccEEEccCC-CCCC-CCCCCCCcccc
Q 037941 37 KDPIAISHPCRDI---QELPEKL-ECPKLKLFFLFSEKL-SLVIPDLFFEGVPSLQVLSLNGF-HFPS-LPSTLGDVATV 109 (308)
Q Consensus 37 ~~l~~L~l~~~~~---~~~~~~~-~~~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~l~~~-~~~~-lp~~~~~~~~l 109 (308)
..++.|++.++.- ..+.... .|++++.|.+.++.. +...-..+...+.+|+++++..| .++. .-..+ .
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l-----a 212 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL-----A 212 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH-----H
Confidence 3456677776654 2233333 788888887777763 32222334456777787777764 3331 11111 3
Q ss_pred cccccccEEeecCCc-Cc--ccchhhhCcCCCC--------------------------EEecCCCCCCCccCcchh-cC
Q 037941 110 GVLKKLVIFSFRNSH-IE--QLPEEIGQLTRLK--------------------------LLDLSTCSKLKSIRPNVI-SN 159 (308)
Q Consensus 110 ~~l~~L~~L~l~~~~-i~--~l~~~~~~l~~L~--------------------------~L~l~~~~~~~~~~~~~~-~~ 159 (308)
..+++|+|+++++|. |+ .+.........++ .+++..|..++......+ ..
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence 346777778777764 33 1111122222233 333334433332221111 12
Q ss_pred CCCCceEEccCCcccccccCCcccchhhhh-cCCCCCEEEeeecc-Cccccchh---hccCCceeEe------eccCccc
Q 037941 160 LPRLEELYMGNSFTHWEVEGQNNASLAELN-QLSRLTTLEMLILD-AQVMPREL---FSLGLERNKI------FLGDVWS 228 (308)
Q Consensus 160 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~-~~~~p~~~---~~~~L~~l~i------~~~~~~~ 228 (308)
+..|++++.+++.-. ....+.+++ +..+|+.+.++.+. ++..--.. ....|+.+.+ .++.+..
T Consensus 293 c~~lq~l~~s~~t~~------~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s 366 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDI------TDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS 366 (483)
T ss_pred hhHhhhhcccCCCCC------chHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh
Confidence 456677777666432 223445554 56789999988875 22211111 1145555543 2223444
Q ss_pred ccCCCCcCceEEEeecCchhhhhhHHHH------hcccceeecCCccchhhhhhccCCCCCCcccEEeccccccccc
Q 037941 229 WTGKYETSRTLKLKLDNRMYLEHGIKML------LRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILY 299 (308)
Q Consensus 229 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 299 (308)
....++.|+.+.|+.+..++ ++++..+ ...|+.|.+.+|+.+++..-++ ...+++|+.+++.+|..+..
T Consensus 367 ls~~C~~lr~lslshce~it-D~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~-l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 367 LSRNCPRLRVLSLSHCELIT-DEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH-LSICRNLERIELIDCQDVTK 441 (483)
T ss_pred hccCCchhccCChhhhhhhh-hhhhhhhhhccccccccceeeecCCCCchHHHHHH-HhhCcccceeeeechhhhhh
Confidence 56678899999999876665 4444332 4679999999999998876655 47788999999999876543
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.06 E-value=2.2e-05 Score=69.52 Aligned_cols=60 Identities=20% Similarity=0.373 Sum_probs=31.7
Q ss_pred CCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCc-CcccchhhhCcCCCCEEecCCCCCCCccC
Q 037941 83 VPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSH-IEQLPEEIGQLTRLKLLDLSTCSKLKSIR 153 (308)
Q Consensus 83 l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~-i~~l~~~~~~l~~L~~L~l~~~~~~~~~~ 153 (308)
+.+++.|++++|.+..+|. + ..+|++|.+++|. ++.+|..+ ..+|+.|++++|..+..+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~-------L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV-------L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccCC-------C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 4566666666666665553 1 2346666665543 44555433 2356666666654344444
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.97 E-value=3.5e-07 Score=67.50 Aligned_cols=118 Identities=14% Similarity=0.212 Sum_probs=71.0
Q ss_pred CccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhC-cCCCCEEecCCCCCCCccCcchhcCCCCC
Q 037941 85 SLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQ-LTRLKLLDLSTCSKLKSIRPNVISNLPRL 163 (308)
Q Consensus 85 ~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 163 (308)
.+..++|+.|.+..+++.... +.....|...++++|.++++|+.+.. .+-++.+++.+|. +.++|.+ +..++.|
T Consensus 28 E~h~ldLssc~lm~i~davy~---l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE-~Aam~aL 102 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYM---LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEE-LAAMPAL 102 (177)
T ss_pred HhhhcccccchhhHHHHHHHH---HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHH-HhhhHHh
Confidence 344556666665544443100 23344455556777777767655543 3466777777776 6677776 6777777
Q ss_pred ceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhccC
Q 037941 164 EELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLG 215 (308)
Q Consensus 164 ~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~ 215 (308)
+.|+++.|.+. ..+.-+..+.++..|+...|...++|-..+.++
T Consensus 103 r~lNl~~N~l~--------~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s~ 146 (177)
T KOG4579|consen 103 RSLNLRFNPLN--------AEPRVIAPLIKLDMLDSPENARAEIDVDLFYSS 146 (177)
T ss_pred hhcccccCccc--------cchHHHHHHHhHHHhcCCCCccccCcHHHhccc
Confidence 77777777666 334455556677777777776666666644433
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.93 E-value=1.3e-07 Score=87.15 Aligned_cols=128 Identities=22% Similarity=0.215 Sum_probs=99.1
Q ss_pred CCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccc
Q 037941 36 QKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKK 114 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~ 114 (308)
+-.|...+.++|.+..+.... -++.+++|++++|.++. .. ++..+++|+.||+++|.+..+|.-- ... .+
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~-v~--~Lr~l~~LkhLDlsyN~L~~vp~l~-----~~g-c~ 233 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTK-VD--NLRRLPKLKHLDLSYNCLRHVPQLS-----MVG-CK 233 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhh-hH--HHHhcccccccccccchhccccccc-----hhh-hh
Confidence 456677788888877776666 78899999999999873 22 4578999999999999999888731 223 34
Q ss_pred ccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCccc
Q 037941 115 LVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTH 174 (308)
Q Consensus 115 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~ 174 (308)
|+.|.+++|.++.+-. +.++.+|+.|++++|- +..+.. ..++.+..|+.|.+.+|.+-
T Consensus 234 L~~L~lrnN~l~tL~g-ie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 234 LQLLNLRNNALTTLRG-IENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred heeeeecccHHHhhhh-HHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9999999999888877 8899999999999986 333222 22566788999999998766
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.89 E-value=2.6e-05 Score=61.60 Aligned_cols=105 Identities=20% Similarity=0.296 Sum_probs=49.5
Q ss_pred CCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccch--hhhCc
Q 037941 58 CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE--EIGQL 135 (308)
Q Consensus 58 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~--~~~~l 135 (308)
..+...++++.|.+. .++. |.+++.|..|.+.+|++..+-+.+ -.-+++|+.|.+.+|.+.++.. .+-.+
T Consensus 41 ~d~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L-----~~~~p~l~~L~LtnNsi~~l~dl~pLa~~ 112 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDL-----DTFLPNLKTLILTNNSIQELGDLDPLASC 112 (233)
T ss_pred ccccceecccccchh-hccc--CCCccccceEEecCCcceeeccch-----hhhccccceEEecCcchhhhhhcchhccC
Confidence 344445555555543 1111 345555555555555555554442 2223445555555555553332 13344
Q ss_pred CCCCEEecCCCCCCCccC---cchhcCCCCCceEEccCC
Q 037941 136 TRLKLLDLSTCSKLKSIR---PNVISNLPRLEELYMGNS 171 (308)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~ 171 (308)
++|+.|.+-+|+ .+.-. .-++..+++|+.||+..-
T Consensus 113 p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 113 PKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CccceeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 555555555544 22111 112455666666666543
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.88 E-value=1.2e-05 Score=66.35 Aligned_cols=167 Identities=16% Similarity=0.177 Sum_probs=101.4
Q ss_pred hcCCCCeeEEeecCCCC-----CCCCcC-CCCCccEEEecCCCCc---CCCCch------hhcCCCCccEEEccCCCCC-
Q 037941 34 LMQKDPIAISHPCRDIQ-----ELPEKL-ECPKLKLFFLFSEKLS---LVIPDL------FFEGVPSLQVLSLNGFHFP- 97 (308)
Q Consensus 34 ~~~~~l~~L~l~~~~~~-----~~~~~~-~~~~L~~L~l~~~~~~---~~~~~~------~~~~l~~L~~L~l~~~~~~- 97 (308)
.+...+..+++++|.+. .+...+ +-++|+..+++.-... ..+++. .+-++++|+..+|+.|-|.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 45778888999988882 122222 5667777777653211 122211 1247888999999998887
Q ss_pred CCCCCCCCcccccccccccEEeecCCcCcccch-hh-------------hCcCCCCEEecCCCCCCCccCcch----hcC
Q 037941 98 SLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EI-------------GQLTRLKLLDLSTCSKLKSIRPNV----ISN 159 (308)
Q Consensus 98 ~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~-------------~~l~~L~~L~l~~~~~~~~~~~~~----~~~ 159 (308)
+.|..+++ .+.+-..|.+|.+++|++..+.. .| ..-+.|+......|. +...+... +..
T Consensus 107 ~~~e~L~d--~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR-lengs~~~~a~~l~s 183 (388)
T COG5238 107 EFPEELGD--LISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR-LENGSKELSAALLES 183 (388)
T ss_pred ccchHHHH--HHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch-hccCcHHHHHHHHHh
Confidence 55554211 14556778888898887663321 12 245778888887777 65555421 233
Q ss_pred CCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCc
Q 037941 160 LPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQ 205 (308)
Q Consensus 160 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 205 (308)
-.+|+++.+..|.|+.. |...-....+..+.+|+.|++.+|-++
T Consensus 184 h~~lk~vki~qNgIrpe--gv~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 184 HENLKEVKIQQNGIRPE--GVTMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred hcCceeEEeeecCcCcc--hhHHHHHHHHHHhCcceeeeccccchh
Confidence 36788888888877711 100111134456778888888888643
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=3.2e-05 Score=64.71 Aligned_cols=62 Identities=19% Similarity=0.201 Sum_probs=31.9
Q ss_pred cCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeecc
Q 037941 135 LTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILD 203 (308)
Q Consensus 135 l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 203 (308)
++++..+.+..|. ++.... .-....+.+-.|+++.+.+. ....+.++..++.|+.|.+..+.
T Consensus 198 Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~id------swasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 198 FPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANNID------SWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred cccchheeeecCc-ccchhhcccCCCCCcchhhhhcccccc------cHHHHHHHcCCchhheeeccCCc
Confidence 3455555555554 221111 11223444445566655554 23345677777777777776665
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.78 E-value=6.3e-05 Score=59.46 Aligned_cols=108 Identities=19% Similarity=0.300 Sum_probs=59.7
Q ss_pred CCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCc-CCCCEEecCCCCCCCccCc-chhcCC
Q 037941 83 VPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQL-TRLKLLDLSTCSKLKSIRP-NVISNL 160 (308)
Q Consensus 83 l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l-~~L~~L~l~~~~~~~~~~~-~~~~~l 160 (308)
+.+...+||++|.+..++. +..++.|.+|.+..|.|+.+.+.+..+ ++|+.|.+.+|+ +.++.. .-+..+
T Consensus 41 ~d~~d~iDLtdNdl~~l~~-------lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~ 112 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDN-------LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASC 112 (233)
T ss_pred ccccceecccccchhhccc-------CCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccC
Confidence 3445566677666665555 555666777777777777666555543 557777776665 332221 114556
Q ss_pred CCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeec
Q 037941 161 PRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLIL 202 (308)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 202 (308)
+.|+.|-+-+|.+..... =-.-.+..+++|+.||+..-
T Consensus 113 p~L~~Ltll~Npv~~k~~----YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKN----YRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CccceeeecCCchhcccC----ceeEEEEecCcceEeehhhh
Confidence 666666666665541100 00013445666777766543
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=1.7e-05 Score=65.68 Aligned_cols=100 Identities=26% Similarity=0.253 Sum_probs=70.8
Q ss_pred CCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchh--hhCc
Q 037941 58 CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEE--IGQL 135 (308)
Q Consensus 58 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~--~~~l 135 (308)
+.+.+.|++.+|.+.. ..++.+|+.|+||.|+.|.++.+-+ +..+.+|++|.+..|.|.++.+- +.++
T Consensus 18 l~~vkKLNcwg~~L~D---Isic~kMp~lEVLsLSvNkIssL~p-------l~rCtrLkElYLRkN~I~sldEL~YLknl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD---ISICEKMPLLEVLSLSVNKISSLAP-------LQRCTRLKELYLRKNCIESLDELEYLKNL 87 (388)
T ss_pred HHHhhhhcccCCCccH---HHHHHhcccceeEEeeccccccchh-------HHHHHHHHHHHHHhcccccHHHHHHHhcC
Confidence 4456666777776552 2445688888888888888887766 77888888888888888866643 5677
Q ss_pred CCCCEEecCCCCCCCccCc----chhcCCCCCceEE
Q 037941 136 TRLKLLDLSTCSKLKSIRP----NVISNLPRLEELY 167 (308)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~ 167 (308)
++|+.|.+..|...+.-+. ..+.-+++|+.||
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888888887775544443 2355577777775
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.21 E-value=0.00023 Score=58.50 Aligned_cols=86 Identities=26% Similarity=0.390 Sum_probs=42.3
Q ss_pred CCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCC--CCC-CCCCCCCCcccccccccccEEeecCCcCcc
Q 037941 52 LPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGF--HFP-SLPSTLGDVATVGVLKKLVIFSFRNSHIEQ 127 (308)
Q Consensus 52 ~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~-~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~ 127 (308)
+.+.. .+..|+.+.+.+..++. +.. |..|++|+.|.++.| ++. .++.- ..++++|+++++++|+++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt-~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl------~e~~P~l~~l~ls~Nki~~ 105 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT-LTN--FPKLPKLKKLELSDNYRRVSGGLEVL------AEKAPNLKVLNLSGNKIKD 105 (260)
T ss_pred cccccccccchhhhhhhccceee-ccc--CCCcchhhhhcccCCcccccccceeh------hhhCCceeEEeecCCcccc
Confidence 33333 55555655555554441 111 235666666666666 332 33332 3344666666666665552
Q ss_pred ---cchhhhCcCCCCEEecCCCC
Q 037941 128 ---LPEEIGQLTRLKLLDLSTCS 147 (308)
Q Consensus 128 ---l~~~~~~l~~L~~L~l~~~~ 147 (308)
++. +..+.+|..|++.+|.
T Consensus 106 lstl~p-l~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 106 LSTLRP-LKELENLKSLDLFNCS 127 (260)
T ss_pred ccccch-hhhhcchhhhhcccCC
Confidence 222 3444555555555554
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.05 E-value=0.00045 Score=56.82 Aligned_cols=105 Identities=25% Similarity=0.231 Sum_probs=78.4
Q ss_pred cCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCC--CCcCCCCchhhcCCCCccEEEccCCCCC---CCCCCCCCcccc
Q 037941 35 MQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSE--KLSLVIPDLFFEGVPSLQVLSLNGFHFP---SLPSTLGDVATV 109 (308)
Q Consensus 35 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~lp~~~~~~~~l 109 (308)
....++.+++.+..+..+-....+++|+.|.++.| .+.+.++... ..+++|++|.++.|.+. ++++ +
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~p-------l 112 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRP-------L 112 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccch-------h
Confidence 35677788888888766665558999999999999 5555555544 46799999999999876 4555 7
Q ss_pred cccccccEEeecCCcCcccc----hhhhCcCCCCEEecCCCC
Q 037941 110 GVLKKLVIFSFRNSHIEQLP----EEIGQLTRLKLLDLSTCS 147 (308)
Q Consensus 110 ~~l~~L~~L~l~~~~i~~l~----~~~~~l~~L~~L~l~~~~ 147 (308)
..+.+|..|++..|..+.+- ..+.-+++|.+|+-....
T Consensus 113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence 78899999999998876432 224456788888766554
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.89 E-value=0.004 Score=46.33 Aligned_cols=102 Identities=20% Similarity=0.334 Sum_probs=42.7
Q ss_pred CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccch-hhhCc
Q 037941 57 ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQL 135 (308)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l 135 (308)
.+.+|+.+.+.. .+. .++...|.++.+|+.+.+..+ +..++... +..+..++++.+.. .+..++. .+..+
T Consensus 10 ~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~-----F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 10 NCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNA-----FSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp T-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTT-----TTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceee-----eecccccccccccc-ccccccccccccc
Confidence 455556555553 222 344444555556666666553 55555543 55555566666644 3333332 24445
Q ss_pred CCCCEEecCCCCCCCccCcchhcCCCCCceEEccC
Q 037941 136 TRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGN 170 (308)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 170 (308)
++|+.+.+..+ +..++...+.++ +|+.+.+..
T Consensus 81 ~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 81 TNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTECEEEETTT---BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccCcc--ccEEchhhhcCC-CceEEEECC
Confidence 66666666442 344444445555 666665543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.85 E-value=8.3e-05 Score=61.68 Aligned_cols=76 Identities=17% Similarity=0.122 Sum_probs=60.3
Q ss_pred eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCC
Q 037941 21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHF 96 (308)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 96 (308)
-++|.++.+|.-...++.+++|.|+-|++..+.+...|++|++|++..|.+...-.-..+.++++|+.|-|..|..
T Consensus 25 Ncwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPC 100 (388)
T KOG2123|consen 25 NCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPC 100 (388)
T ss_pred cccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCc
Confidence 3558888888877889999999999999998888889999999999999886432334456788888888877654
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.81 E-value=0.0049 Score=45.86 Aligned_cols=113 Identities=19% Similarity=0.326 Sum_probs=35.4
Q ss_pred CCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941 38 DPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL 115 (308)
Q Consensus 38 ~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L 115 (308)
+++.+.+.. .+..++... .+++++.+.+..+ +. .++...|.++..++.+.+.. .+..++... +..+.+|
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~-----F~~~~~l 83 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNA-----FSNCTNL 83 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTT-----TTT-TTE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccc-----ccccccc
Confidence 344444432 333343333 4445555555443 22 33333344444555555533 333333332 4445555
Q ss_pred cEEeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCC
Q 037941 116 VIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRL 163 (308)
Q Consensus 116 ~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 163 (308)
+++.+..+ +..++.. +... +|+.+.+..+ +..++...+.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TTB---SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECCC--ccEECCccccccccC
Confidence 55555433 3333322 3333 4555544431 333444444444443
No 68
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.72 E-value=7.2e-05 Score=65.30 Aligned_cols=231 Identities=16% Similarity=0.136 Sum_probs=118.2
Q ss_pred CCccEEEecCCCCcCCCC-chhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCc-Cc--ccchhhhC
Q 037941 59 PKLKLFFLFSEKLSLVIP-DLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSH-IE--QLPEEIGQ 134 (308)
Q Consensus 59 ~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~-i~--~l~~~~~~ 134 (308)
..|+.|.+.++.-.+.-+ -.+....++++.|.+.++. .+.+.. -.+.-..+++|+++++..|. ++ .+-.....
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~--~iTd~s-~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK--KITDSS-LLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcce--eccHHH-HHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 356777777665332111 2333566777777666654 111110 00002235677777777643 55 22223445
Q ss_pred cCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCCcccchh-hhhcCCCCCEEEeeecc-Cccccchh
Q 037941 135 LTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQNNASLA-ELNQLSRLTTLEMLILD-AQVMPREL 211 (308)
Q Consensus 135 l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~-~~~~p~~~ 211 (308)
+++|+++++++|..++.-.. .....+..++.+...+|.=. ..+.+. .-+.+..+-++++..+. ++...-+.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~------~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~ 288 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL------ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL 288 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc------cHHHHHHHhccChHhhccchhhhccccchHHHH
Confidence 67777777777764443111 11233444555544444211 011111 11234445555544442 33222221
Q ss_pred hc---cCCceeEeeccC------cccccCCCCcCceEEEeecCchhhhhhHH---HHhcccceeecCCccchhhhhhccC
Q 037941 212 FS---LGLERNKIFLGD------VWSWTGKYETSRTLKLKLDNRMYLEHGIK---MLLRRTEDLHLDKLNGLQNVLHELD 279 (308)
Q Consensus 212 ~~---~~L~~l~i~~~~------~~~~~~~~~~L~~L~L~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~ 279 (308)
.. ..|+.+...... ++......++|+.+.+..++..+ +.+.. .-.+.|+.+.+.+|..+.+..-.-.
T Consensus 289 i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fs-d~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl 367 (483)
T KOG4341|consen 289 IACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFS-DRGFTMLGRNCPHLERLDLEECGLITDGTLASL 367 (483)
T ss_pred HhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhh-hhhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence 11 455665543222 22235567889999888876544 33322 2247889999988766555422223
Q ss_pred CCCCCcccEEeccccccccc
Q 037941 280 GEGFPRLKHLLVQNASEILY 299 (308)
Q Consensus 280 ~~~~~~L~~L~l~~c~~l~~ 299 (308)
...+|.|++|.+++|..+..
T Consensus 368 s~~C~~lr~lslshce~itD 387 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITD 387 (483)
T ss_pred ccCCchhccCChhhhhhhhh
Confidence 46789999999999966543
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.40 E-value=0.0016 Score=32.25 Aligned_cols=18 Identities=11% Similarity=0.425 Sum_probs=9.6
Q ss_pred ccEEeecCCcCcccchhh
Q 037941 115 LVIFSFRNSHIEQLPEEI 132 (308)
Q Consensus 115 L~~L~l~~~~i~~l~~~~ 132 (308)
|++|++++|.++.+|..+
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 455555555555555443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.35 E-value=0.00085 Score=61.88 Aligned_cols=113 Identities=23% Similarity=0.301 Sum_probs=60.8
Q ss_pred CCCCccEEEecCCCCcCCC-CchhhcCCCCccEEEccCC-C-CCCCC---CCCCCcccccccccccEEeecCCc-Cccc-
Q 037941 57 ECPKLKLFFLFSEKLSLVI-PDLFFEGVPSLQVLSLNGF-H-FPSLP---STLGDVATVGVLKKLVIFSFRNSH-IEQL- 128 (308)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~-~-~~~lp---~~~~~~~~l~~l~~L~~L~l~~~~-i~~l- 128 (308)
.+++++.+.+.++...... -..+....+.|+.|+++++ . ....+ ..+ ...+.+|+.|+++++. +++.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-----~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLL-----LSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhh-----hhhcCCcCccchhhhhccCchh
Confidence 4667777777766432221 1233456777777777763 1 11111 111 3445777777777776 5522
Q ss_pred -chhhhCcCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCccc
Q 037941 129 -PEEIGQLTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTH 174 (308)
Q Consensus 129 -~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~ 174 (308)
......+++|+.|.+.+|..++...- .+...+++|++|++++|...
T Consensus 261 l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 22223367777777776663322221 12345667777777776543
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.45 E-value=0.004 Score=30.76 Aligned_cols=17 Identities=41% Similarity=0.727 Sum_probs=10.4
Q ss_pred ccEEEccCCCCCCCCCC
Q 037941 86 LQVLSLNGFHFPSLPST 102 (308)
Q Consensus 86 L~~L~l~~~~~~~lp~~ 102 (308)
|++|++++|.++.+|++
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 56666666666666655
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.34 E-value=0.0082 Score=55.32 Aligned_cols=14 Identities=21% Similarity=0.190 Sum_probs=6.5
Q ss_pred CCCcCceEEEeecC
Q 037941 232 KYETSRTLKLKLDN 245 (308)
Q Consensus 232 ~~~~L~~L~L~~~~ 245 (308)
.++.|+.|+|+.+.
T Consensus 293 ~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 293 RCPSLRELDLSGCH 306 (482)
T ss_pred hcCcccEEeeecCc
Confidence 34445555554443
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.05 E-value=0.016 Score=26.56 Aligned_cols=11 Identities=18% Similarity=0.419 Sum_probs=3.1
Q ss_pred ccEEeecCCcC
Q 037941 115 LVIFSFRNSHI 125 (308)
Q Consensus 115 L~~L~l~~~~i 125 (308)
|+.|++++|.+
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333333333
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.87 E-value=0.017 Score=26.52 Aligned_cols=16 Identities=38% Similarity=0.617 Sum_probs=8.0
Q ss_pred CccEEEccCCCCCCCC
Q 037941 85 SLQVLSLNGFHFPSLP 100 (308)
Q Consensus 85 ~L~~L~l~~~~~~~lp 100 (308)
+|++|++++|.+.++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5667777777766554
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=0.011 Score=46.98 Aligned_cols=41 Identities=27% Similarity=0.301 Sum_probs=23.6
Q ss_pred CCCcCceEEEeecCchhhhhhHHHH--hcccceeecCCccchhh
Q 037941 232 KYETSRTLKLKLDNRMYLEHGIKML--LRRTEDLHLDKLNGLQN 273 (308)
Q Consensus 232 ~~~~L~~L~L~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~ 273 (308)
..++|+.|+|++|..++ +.++.++ |++|+.|.+++++.+..
T Consensus 149 ~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 149 LAPSLQDLDLSGCPRIT-DGGLACLLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred cccchheeeccCCCeec-hhHHHHHHHhhhhHHHHhcCchhhhc
Confidence 45677777777776665 2232222 46677777766654443
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.93 E-value=0.18 Score=40.36 Aligned_cols=69 Identities=12% Similarity=0.002 Sum_probs=48.1
Q ss_pred cCCCCcCceEEEeecCchhh--hhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccccccc
Q 037941 230 TGKYETSRTLKLKLDNRMYL--EHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILY 299 (308)
Q Consensus 230 ~~~~~~L~~L~L~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 299 (308)
...++.++.|.+..+..... .+.+...+++|+.|+|++|+.+++-+... ...|++|+.|.+.+.+.+..
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNLRRLHLYDLPYVAN 191 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-HHHhhhhHHHHhcCchhhhc
Confidence 45566666677766655442 33344467999999999999998865433 35688999999988766543
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.44 E-value=0.12 Score=26.44 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=5.8
Q ss_pred ccEEeecCCcCcccc
Q 037941 115 LVIFSFRNSHIEQLP 129 (308)
Q Consensus 115 L~~L~l~~~~i~~l~ 129 (308)
|++|++++|.++.+|
T Consensus 4 L~~L~L~~N~l~~lp 18 (26)
T smart00370 4 LRELDLSNNQLSSLP 18 (26)
T ss_pred CCEEECCCCcCCcCC
Confidence 333333333333333
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.44 E-value=0.12 Score=26.44 Aligned_cols=15 Identities=27% Similarity=0.541 Sum_probs=5.8
Q ss_pred ccEEeecCCcCcccc
Q 037941 115 LVIFSFRNSHIEQLP 129 (308)
Q Consensus 115 L~~L~l~~~~i~~l~ 129 (308)
|++|++++|.++.+|
T Consensus 4 L~~L~L~~N~l~~lp 18 (26)
T smart00369 4 LRELDLSNNQLSSLP 18 (26)
T ss_pred CCEEECCCCcCCcCC
Confidence 333333333333333
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.89 E-value=0.13 Score=26.29 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=17.3
Q ss_pred CCCccEEEccCCCCCCCCCC
Q 037941 83 VPSLQVLSLNGFHFPSLPST 102 (308)
Q Consensus 83 l~~L~~L~l~~~~~~~lp~~ 102 (308)
+++|++|++++|.+..+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46789999999999999886
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.89 E-value=0.13 Score=26.29 Aligned_cols=20 Identities=35% Similarity=0.622 Sum_probs=17.3
Q ss_pred CCCccEEEccCCCCCCCCCC
Q 037941 83 VPSLQVLSLNGFHFPSLPST 102 (308)
Q Consensus 83 l~~L~~L~l~~~~~~~lp~~ 102 (308)
+++|++|++++|.+..+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 46789999999999999886
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.04 E-value=0.019 Score=46.80 Aligned_cols=83 Identities=16% Similarity=0.118 Sum_probs=56.0
Q ss_pred CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcC
Q 037941 57 ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLT 136 (308)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~ 136 (308)
.....+.|+++.|+... +... |+.+..+..|+++.+.+..+|.. ++.+..++.++...|..+..|.+.++.+
T Consensus 40 ~~kr~tvld~~s~r~vn-~~~n-~s~~t~~~rl~~sknq~~~~~~d------~~q~~e~~~~~~~~n~~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLVN-LGKN-FSILTRLVRLDLSKNQIKFLPKD------AKQQRETVNAASHKNNHSQQPKSQKKEP 111 (326)
T ss_pred ccceeeeehhhhhHHHh-hccc-hHHHHHHHHHhccHhhHhhChhh------HHHHHHHHHHHhhccchhhCCccccccC
Confidence 56677777777766531 1222 24566677777777777777776 6667777777777777777777777777
Q ss_pred CCCEEecCCCC
Q 037941 137 RLKLLDLSTCS 147 (308)
Q Consensus 137 ~L~~L~l~~~~ 147 (308)
+++.++...+.
T Consensus 112 ~~k~~e~k~~~ 122 (326)
T KOG0473|consen 112 HPKKNEQKKTE 122 (326)
T ss_pred CcchhhhccCc
Confidence 77777777665
No 82
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=84.83 E-value=0.6 Score=23.83 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=11.5
Q ss_pred CCcccEEecccccccc
Q 037941 283 FPRLKHLLVQNASEIL 298 (308)
Q Consensus 283 ~~~L~~L~l~~c~~l~ 298 (308)
+++|++|++.+|+++.
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4677788888887664
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.97 E-value=0.031 Score=45.68 Aligned_cols=85 Identities=7% Similarity=-0.020 Sum_probs=70.5
Q ss_pred hcCCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941 34 LMQKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL 112 (308)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l 112 (308)
.+....+.||++.|..-.+...+ -+..+..|+++.|.+. ..|.++ .....++.+++..|+.+..|.+ ++..
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~-~q~~e~~~~~~~~n~~~~~p~s------~~k~ 110 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDA-KQQRETVNAASHKNNHSQQPKS------QKKE 110 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhH-HHHHHHHHHHhhccchhhCCcc------cccc
Confidence 46778889999998876665555 6778888999988875 556665 6788899999999999999999 9999
Q ss_pred ccccEEeecCCcCc
Q 037941 113 KKLVIFSFRNSHIE 126 (308)
Q Consensus 113 ~~L~~L~l~~~~i~ 126 (308)
+++++++.-++.+.
T Consensus 111 ~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 111 PHPKKNEQKKTEFF 124 (326)
T ss_pred CCcchhhhccCcch
Confidence 99999999998755
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.97 E-value=1.3 Score=22.69 Aligned_cols=17 Identities=35% Similarity=0.550 Sum_probs=9.1
Q ss_pred CccEEEccCCCCCCCCC
Q 037941 85 SLQVLSLNGFHFPSLPS 101 (308)
Q Consensus 85 ~L~~L~l~~~~~~~lp~ 101 (308)
+|++|++++|+++.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 34555555555555554
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=77.35 E-value=1.8 Score=22.22 Aligned_cols=14 Identities=14% Similarity=0.287 Sum_probs=7.0
Q ss_pred ccccEEeecCCcCc
Q 037941 113 KKLVIFSFRNSHIE 126 (308)
Q Consensus 113 ~~L~~L~l~~~~i~ 126 (308)
.+|++|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555544
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=75.11 E-value=1.6 Score=21.64 Aligned_cols=14 Identities=21% Similarity=0.377 Sum_probs=7.0
Q ss_pred ccccEEeecCCcCc
Q 037941 113 KKLVIFSFRNSHIE 126 (308)
Q Consensus 113 ~~L~~L~l~~~~i~ 126 (308)
++|++|++++|.++
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45566666666554
No 87
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=67.59 E-value=0.043 Score=50.56 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=17.8
Q ss_pred CeeEEeecCCCCCC-----CCcC-CCCCccEEEecCCCCc
Q 037941 39 PIAISHPCRDIQEL-----PEKL-ECPKLKLFFLFSEKLS 72 (308)
Q Consensus 39 l~~L~l~~~~~~~~-----~~~~-~~~~L~~L~l~~~~~~ 72 (308)
+.++++.+|.+..- .... ..++|..|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 55566666655221 1122 4556666666666654
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=61.73 E-value=7.2 Score=20.20 Aligned_cols=11 Identities=18% Similarity=0.356 Sum_probs=4.9
Q ss_pred ccEEeecCCcC
Q 037941 115 LVIFSFRNSHI 125 (308)
Q Consensus 115 L~~L~l~~~~i 125 (308)
|++|++++|.+
T Consensus 4 L~~LdL~~N~i 14 (28)
T smart00368 4 LRELDLSNNKL 14 (28)
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=48.43 E-value=14 Score=34.54 Aligned_cols=77 Identities=16% Similarity=0.047 Sum_probs=38.9
Q ss_pred cCCceeEeeccCccc------ccCCCCcCceEEEeecCchhh-hhhHHH-HhcccceeecCCccchhhhhh-----ccCC
Q 037941 214 LGLERNKIFLGDVWS------WTGKYETSRTLKLKLDNRMYL-EHGIKM-LLRRTEDLHLDKLNGLQNVLH-----ELDG 280 (308)
Q Consensus 214 ~~L~~l~i~~~~~~~------~~~~~~~L~~L~L~~~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~-----~~~~ 280 (308)
+.+.+++++++.+.. .....|+++.|+|+.|..... ...+.. -...|++|.+.+.+-.+.... ....
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i~ 297 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAIR 297 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHHH
Confidence 455555555555433 244567888888888732211 111211 125577777777444333111 0011
Q ss_pred CCCCcccEEe
Q 037941 281 EGFPRLKHLL 290 (308)
Q Consensus 281 ~~~~~L~~L~ 290 (308)
+.||+|..|+
T Consensus 298 ~~FPKL~~LD 307 (585)
T KOG3763|consen 298 ELFPKLLRLD 307 (585)
T ss_pred Hhcchheeec
Confidence 3578777775
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=35.34 E-value=30 Score=32.38 Aligned_cols=75 Identities=12% Similarity=-0.026 Sum_probs=44.0
Q ss_pred cCCCCCEEEeeeccCccccchh--h--ccCCceeEeeccC--ccc--ccC--CCCcCceEEEeecCchhh-------hhh
Q 037941 190 QLSRLTTLEMLILDAQVMPREL--F--SLGLERNKIFLGD--VWS--WTG--KYETSRTLKLKLDNRMYL-------EHG 252 (308)
Q Consensus 190 ~l~~L~~L~l~~~~~~~~p~~~--~--~~~L~~l~i~~~~--~~~--~~~--~~~~L~~L~L~~~~~~~~-------~~~ 252 (308)
+.+.+..+.+++|++..+..-. . .++|+.|+++.+. +.. +.+ +...|+.|-+.+|...+. ...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 4556677777777654443221 1 1777777777662 111 122 234677777877754432 345
Q ss_pred HHHHhcccceee
Q 037941 253 IKMLLRRTEDLH 264 (308)
Q Consensus 253 ~~~~~~~L~~L~ 264 (308)
+...||.|..|+
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 667789998887
No 91
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=32.10 E-value=1.8 Score=40.15 Aligned_cols=163 Identities=18% Similarity=0.085 Sum_probs=99.7
Q ss_pred cCCCCeeEEeecCCCCCC-----CCcC-C-CCCccEEEecCCCCcCCCCch---hhcCCCCccEEEccCCCCC-----CC
Q 037941 35 MQKDPIAISHPCRDIQEL-----PEKL-E-CPKLKLFFLFSEKLSLVIPDL---FFEGVPSLQVLSLNGFHFP-----SL 99 (308)
Q Consensus 35 ~~~~l~~L~l~~~~~~~~-----~~~~-~-~~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~-----~l 99 (308)
....+..|+++.|.+... .... . -..+++|.+..|.++...... .+.....+++++++.|.+. .+
T Consensus 113 t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l 192 (478)
T KOG4308|consen 113 TLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVL 192 (478)
T ss_pred ccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHH
Confidence 456777899998888421 1111 2 256677888888776432221 2245778888899888774 12
Q ss_pred CCCCCCcccccccccccEEeecCCcCc-----ccchhhhCcCC-CCEEecCCCCCCCcc-----CcchhcCC-CCCceEE
Q 037941 100 PSTLGDVATVGVLKKLVIFSFRNSHIE-----QLPEEIGQLTR-LKLLDLSTCSKLKSI-----RPNVISNL-PRLEELY 167 (308)
Q Consensus 100 p~~~~~~~~l~~l~~L~~L~l~~~~i~-----~l~~~~~~l~~-L~~L~l~~~~~~~~~-----~~~~~~~l-~~L~~L~ 167 (308)
+..+. ..+....++++|++.+|.++ .+...+...+. +..+++..|. +... ... +..+ ..+++++
T Consensus 193 ~~~l~--~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d~g~~~L~~~-l~~~~~~l~~l~ 268 (478)
T KOG4308|consen 193 SQALE--SAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LGDVGVEKLLPC-LSVLSETLRVLD 268 (478)
T ss_pred hhhhh--hhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cchHHHHHHHHH-hcccchhhhhhh
Confidence 33200 00224678899999998876 22233455555 5568888876 4322 222 3444 5778899
Q ss_pred ccCCcccccccCCcccchhhhhcCCCCCEEEeeeccC
Q 037941 168 MGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDA 204 (308)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 204 (308)
+..|.+..... ......+..+++++.+.+..|.+
T Consensus 269 l~~nsi~~~~~---~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 269 LSRNSITEKGV---RDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hhcCCccccch---HHHHHHHhhhHHHHHhhcccCcc
Confidence 99888883322 23345666777888888888864
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=22.83 E-value=52 Score=37.20 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=23.3
Q ss_pred EecCCCCcCCCCchhhcCCCCccEEEccCCCCC
Q 037941 65 FLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP 97 (308)
Q Consensus 65 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 97 (308)
+|++|.+. .++...|..+.+|+.|+|++|.|.
T Consensus 1 DLSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIS-TIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCC-ccChHHhccCCCceEEEeeCCccc
Confidence 35677776 566666778888888888887764
Done!