Query 037941
Match_columns 308
No_of_seqs 147 out of 1808
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 09:40:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v47_A TOLL-like receptor 5B a 99.9 1.4E-24 4.7E-29 197.4 18.4 148 21-176 16-169 (455)
2 2id5_A Lingo-1, leucine rich r 99.9 4E-24 1.4E-28 195.6 21.6 264 21-302 17-313 (477)
3 3o6n_A APL1; leucine-rich repe 99.9 6.9E-24 2.4E-28 189.1 20.8 244 36-295 68-350 (390)
4 1xku_A Decorin; proteoglycan, 99.9 7E-24 2.4E-28 184.9 19.6 238 36-295 51-304 (330)
5 2z80_A TOLL-like receptor 2, v 99.9 1.8E-24 6.1E-29 190.4 14.9 257 23-296 39-313 (353)
6 1ogq_A PGIP-2, polygalacturona 99.9 1.5E-24 5E-29 187.8 13.8 245 37-301 50-308 (313)
7 2id5_A Lingo-1, leucine rich r 99.9 9E-24 3.1E-28 193.2 18.2 263 24-295 41-331 (477)
8 3oja_B Anopheles plasmodium-re 99.9 2.9E-23 9.8E-28 195.0 21.8 244 36-295 74-356 (597)
9 4fcg_A Uncharacterized protein 99.9 9.2E-24 3.1E-28 184.0 16.5 220 36-294 80-311 (328)
10 3zyj_A Leucine-rich repeat-con 99.9 8.5E-24 2.9E-28 191.5 16.7 231 22-268 50-289 (440)
11 3zyi_A Leucine-rich repeat-con 99.9 8.4E-24 2.9E-28 192.2 16.6 230 22-267 61-299 (452)
12 1ozn_A Reticulon 4 receptor; N 99.9 1.6E-23 5.4E-28 178.9 17.2 258 21-294 17-284 (285)
13 4fmz_A Internalin; leucine ric 99.9 9.1E-23 3.1E-27 178.9 22.1 251 24-301 75-327 (347)
14 4ecn_A Leucine-rich repeat pro 99.9 7.9E-24 2.7E-28 204.7 16.2 259 29-301 439-744 (876)
15 2ft3_A Biglycan; proteoglycan, 99.9 1.3E-23 4.6E-28 183.2 15.6 249 24-296 42-306 (332)
16 3oja_B Anopheles plasmodium-re 99.9 2.1E-23 7E-28 196.0 17.3 254 35-301 49-317 (597)
17 4fmz_A Internalin; leucine ric 99.9 2.2E-22 7.6E-27 176.5 22.7 247 24-299 53-301 (347)
18 4eco_A Uncharacterized protein 99.9 3.8E-24 1.3E-28 202.2 12.3 225 26-267 194-466 (636)
19 3rgz_A Protein brassinosteroid 99.9 4.7E-23 1.6E-27 198.9 19.2 251 36-304 393-724 (768)
20 4eco_A Uncharacterized protein 99.9 1.5E-23 5.2E-28 198.2 14.5 253 36-302 272-583 (636)
21 4fcg_A Uncharacterized protein 99.9 4.6E-23 1.6E-27 179.5 15.3 188 24-222 90-285 (328)
22 3t6q_A CD180 antigen; protein- 99.9 6.6E-23 2.2E-27 192.8 16.9 173 21-208 18-195 (606)
23 3vq2_A TLR4, TOLL-like recepto 99.9 3.8E-22 1.3E-26 187.6 22.1 148 20-176 16-168 (606)
24 2ft3_A Biglycan; proteoglycan, 99.9 9.8E-23 3.3E-27 177.8 16.5 244 38-302 34-281 (332)
25 1xku_A Decorin; proteoglycan, 99.9 3E-22 1E-26 174.5 19.6 244 38-302 32-280 (330)
26 2z81_A CD282 antigen, TOLL-lik 99.9 5E-23 1.7E-27 191.4 14.5 178 23-207 13-211 (549)
27 1o6v_A Internalin A; bacterial 99.9 6.9E-22 2.3E-26 180.3 21.1 257 25-301 56-347 (466)
28 3t6q_A CD180 antigen; protein- 99.9 3.4E-22 1.2E-26 187.9 19.1 244 35-294 276-533 (606)
29 2z63_A TOLL-like receptor 4, v 99.9 4.5E-22 1.6E-26 185.6 19.7 146 21-175 13-163 (570)
30 4ecn_A Leucine-rich repeat pro 99.9 2.8E-22 9.4E-27 193.9 18.6 254 35-302 513-823 (876)
31 2z66_A Variable lymphocyte rec 99.9 1E-22 3.4E-27 175.6 13.9 232 21-267 13-257 (306)
32 3j0a_A TOLL-like receptor 5; m 99.9 7.4E-22 2.5E-26 192.4 19.2 149 20-176 9-163 (844)
33 1ziw_A TOLL-like receptor 3; i 99.9 6.4E-22 2.2E-26 188.6 18.1 173 21-208 10-187 (680)
34 1ogq_A PGIP-2, polygalacturona 99.9 2.4E-22 8.3E-27 173.9 13.6 226 59-303 50-287 (313)
35 3rgz_A Protein brassinosteroid 99.9 1.9E-22 6.3E-27 194.7 14.2 249 37-302 294-556 (768)
36 3o6n_A APL1; leucine-rich repe 99.9 1.2E-21 4E-26 174.7 17.2 254 35-301 43-311 (390)
37 2z66_A Variable lymphocyte rec 99.9 1.5E-22 5.1E-27 174.6 11.0 238 40-295 10-259 (306)
38 1o6v_A Internalin A; bacterial 99.9 6.6E-21 2.3E-25 173.7 22.1 223 26-267 79-340 (466)
39 1ozn_A Reticulon 4 receptor; N 99.9 8.4E-21 2.9E-25 161.9 19.1 215 39-269 13-236 (285)
40 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-20 5.6E-25 175.9 22.4 232 22-295 47-295 (622)
41 3vq2_A TLR4, TOLL-like recepto 99.9 5.8E-22 2E-26 186.4 12.6 240 34-294 282-555 (606)
42 4g8a_A TOLL-like receptor 4; l 99.9 2.9E-21 1E-25 182.1 16.9 145 22-175 38-187 (635)
43 3bz5_A Internalin-J, INLJ; leu 99.9 7.5E-21 2.6E-25 172.7 18.9 118 36-171 41-158 (457)
44 2z81_A CD282 antigen, TOLL-lik 99.9 3.8E-21 1.3E-25 178.7 17.1 257 34-301 47-426 (549)
45 3o53_A Protein LRIM1, AGAP0063 99.9 7.2E-23 2.5E-27 177.5 4.6 240 35-299 32-277 (317)
46 2z80_A TOLL-like receptor 2, v 99.9 1E-20 3.5E-25 166.3 18.2 248 38-303 32-295 (353)
47 2z7x_B TOLL-like receptor 1, v 99.9 2.1E-20 7.3E-25 172.6 20.8 138 22-173 7-150 (520)
48 3zyi_A Leucine-rich repeat-con 99.9 1.2E-20 4.3E-25 171.3 18.5 242 38-295 55-301 (452)
49 2o6q_A Variable lymphocyte rec 99.9 2.5E-20 8.5E-25 157.8 18.7 192 39-245 18-216 (270)
50 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-20 4.1E-25 176.0 18.3 139 21-173 37-181 (562)
51 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.1E-20 3.7E-25 176.3 17.9 82 34-125 73-158 (562)
52 3bz5_A Internalin-J, INLJ; leu 99.9 3.2E-20 1.1E-24 168.6 20.4 243 24-302 51-304 (457)
53 3v47_A TOLL-like receptor 5B a 99.9 1.1E-20 3.7E-25 171.6 17.3 153 40-206 13-168 (455)
54 1ziw_A TOLL-like receptor 3; i 99.9 1.9E-20 6.6E-25 178.3 19.5 250 37-300 329-599 (680)
55 3g06_A SSPH2 (leucine-rich rep 99.9 3.4E-20 1.2E-24 173.8 20.5 226 36-302 39-278 (622)
56 3zyj_A Leucine-rich repeat-con 99.9 1.4E-20 4.9E-25 170.3 17.4 242 38-295 44-290 (440)
57 2z7x_B TOLL-like receptor 1, v 99.9 1.5E-20 5.2E-25 173.6 17.6 154 133-295 321-479 (520)
58 2z62_A TOLL-like receptor 4, v 99.9 1.7E-20 5.8E-25 159.3 16.4 213 22-247 14-237 (276)
59 2o6q_A Variable lymphocyte rec 99.8 7.7E-20 2.6E-24 154.8 19.7 189 22-225 23-216 (270)
60 1p9a_G Platelet glycoprotein I 99.8 3.5E-20 1.2E-24 158.5 17.3 194 36-246 9-207 (290)
61 2z63_A TOLL-like receptor 4, v 99.8 1.5E-20 5.2E-25 175.3 15.7 146 24-176 37-192 (570)
62 2z62_A TOLL-like receptor 4, v 99.8 3.2E-20 1.1E-24 157.6 16.4 212 42-267 12-233 (276)
63 1wwl_A Monocyte differentiatio 99.8 2.8E-22 9.6E-27 173.4 3.5 238 36-295 42-307 (312)
64 3o53_A Protein LRIM1, AGAP0063 99.8 1.7E-21 5.8E-26 168.9 8.2 232 39-297 12-250 (317)
65 1h6u_A Internalin H; cell adhe 99.8 7.1E-20 2.4E-24 158.0 17.7 191 35-248 39-231 (308)
66 3rfs_A Internalin B, repeat mo 99.8 2.8E-20 9.6E-25 157.7 14.3 174 34-223 38-214 (272)
67 1jl5_A Outer protein YOPM; leu 99.8 2E-19 6.7E-24 163.3 19.9 95 38-147 112-206 (454)
68 1p9a_G Platelet glycoprotein I 99.8 6E-20 2.1E-24 157.0 15.1 187 22-226 17-207 (290)
69 3oja_A Leucine-rich immune mol 99.8 1.8E-21 6.1E-26 178.3 6.0 232 36-292 33-270 (487)
70 1jl5_A Outer protein YOPM; leu 99.8 2.1E-19 7.3E-24 163.0 19.4 197 24-245 80-288 (454)
71 2xwt_C Thyrotropin receptor; s 99.8 3.7E-20 1.3E-24 153.9 12.4 204 27-268 23-236 (239)
72 2xwt_C Thyrotropin receptor; s 99.8 3E-20 1E-24 154.4 11.7 214 42-297 16-239 (239)
73 3oja_A Leucine-rich immune mol 99.8 7.1E-20 2.4E-24 167.7 12.6 214 57-297 32-250 (487)
74 3j0a_A TOLL-like receptor 5; m 99.8 3.3E-19 1.1E-23 173.7 17.2 243 36-294 265-536 (844)
75 1wwl_A Monocyte differentiatio 99.8 1.2E-19 4.3E-24 156.7 12.5 220 39-272 65-309 (312)
76 3m19_A Variable lymphocyte rec 99.8 1.3E-18 4.4E-23 145.6 17.4 157 38-209 15-172 (251)
77 3m19_A Variable lymphocyte rec 99.8 8.6E-19 2.9E-23 146.7 16.1 171 21-206 20-193 (251)
78 4g8a_A TOLL-like receptor 4; l 99.8 2.2E-18 7.6E-23 162.4 19.2 122 24-152 61-188 (635)
79 4glp_A Monocyte differentiatio 99.8 3.1E-19 1.1E-23 154.1 12.0 198 37-267 91-303 (310)
80 3rfs_A Internalin B, repeat mo 99.8 3.1E-18 1.1E-22 145.0 16.5 168 24-205 50-218 (272)
81 1h6u_A Internalin H; cell adhe 99.8 3.7E-18 1.3E-22 147.2 16.9 182 24-228 50-231 (308)
82 1h6t_A Internalin B; cell adhe 99.8 2.7E-18 9.2E-23 146.9 14.5 170 34-226 43-212 (291)
83 4ay9_X Follicle-stimulating ho 99.8 1.2E-18 4.3E-23 152.9 11.9 149 21-175 15-168 (350)
84 2o6s_A Variable lymphocyte rec 99.8 2.6E-18 9E-23 139.6 12.2 143 24-174 16-161 (208)
85 2ca6_A RAN GTPase-activating p 99.8 1.6E-19 5.6E-24 160.6 3.1 251 34-295 29-341 (386)
86 4glp_A Monocyte differentiatio 99.8 9.9E-19 3.4E-23 150.9 7.5 222 57-295 62-305 (310)
87 3e6j_A Variable lymphocyte rec 99.7 1.9E-17 6.5E-22 136.6 14.5 148 41-204 23-171 (229)
88 2ca6_A RAN GTPase-activating p 99.7 2E-19 7E-24 159.9 2.6 246 44-295 16-314 (386)
89 2ast_B S-phase kinase-associat 99.7 1.2E-18 4.1E-23 151.9 6.8 127 37-171 70-205 (336)
90 4ezg_A Putative uncharacterize 99.7 2.7E-17 9.2E-22 132.5 13.8 152 35-206 42-195 (197)
91 1m9s_A Internalin B; cell inva 99.7 2E-17 6.8E-22 154.8 14.7 171 33-226 39-209 (605)
92 4ay9_X Follicle-stimulating ho 99.7 3E-17 1E-21 144.1 14.0 233 40-293 12-255 (350)
93 1h6t_A Internalin B; cell adhe 99.7 7.2E-17 2.5E-21 138.0 15.8 164 24-210 55-218 (291)
94 2v70_A SLIT-2, SLIT homolog 2 99.7 5.2E-17 1.8E-21 133.1 14.2 151 40-204 14-165 (220)
95 1xeu_A Internalin C; cellular 99.7 5.4E-17 1.8E-21 136.7 14.5 162 25-210 29-190 (263)
96 1z7x_W Ribonuclease inhibitor; 99.7 1.6E-18 5.4E-23 157.6 5.3 133 35-174 26-183 (461)
97 2ast_B S-phase kinase-associat 99.7 1E-17 3.5E-22 146.0 9.8 240 36-301 46-309 (336)
98 3e6j_A Variable lymphocyte rec 99.7 1.2E-16 4.1E-21 131.8 15.5 146 22-175 26-173 (229)
99 2v9t_B SLIT homolog 2 protein 99.7 7.6E-17 2.6E-21 132.1 13.8 147 41-203 15-163 (220)
100 2v9t_B SLIT homolog 2 protein 99.7 6.7E-17 2.3E-21 132.5 13.2 147 21-175 17-166 (220)
101 2o6s_A Variable lymphocyte rec 99.7 5E-16 1.7E-20 126.0 16.6 150 40-204 10-160 (208)
102 1m9s_A Internalin B; cell inva 99.7 1.7E-17 5.9E-22 155.2 8.8 189 36-247 20-210 (605)
103 2xot_A Amphoterin-induced prot 99.7 6.3E-17 2.2E-21 142.6 11.3 143 24-174 27-176 (361)
104 3goz_A Leucine-rich repeat-con 99.7 3.7E-17 1.3E-21 144.1 9.2 231 34-273 19-298 (362)
105 1xeu_A Internalin C; cellular 99.7 2.6E-17 9E-22 138.6 7.5 169 33-225 15-183 (263)
106 3cvr_A Invasion plasmid antige 99.7 8.7E-16 3E-20 142.3 18.2 177 36-248 58-244 (571)
107 2xot_A Amphoterin-induced prot 99.7 2.5E-16 8.6E-21 138.7 13.4 174 40-225 21-200 (361)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 2.8E-16 9.7E-21 128.7 11.6 147 22-176 18-168 (220)
109 3goz_A Leucine-rich repeat-con 99.7 3.5E-17 1.2E-21 144.3 6.5 242 42-295 3-295 (362)
110 2ell_A Acidic leucine-rich nuc 99.7 5.7E-16 2E-20 121.3 11.5 139 59-210 24-165 (168)
111 3cvr_A Invasion plasmid antige 99.7 1.3E-15 4.6E-20 141.1 15.5 180 59-273 59-245 (571)
112 1z7x_W Ribonuclease inhibitor; 99.7 7.2E-18 2.5E-22 153.2 0.3 248 34-294 110-408 (461)
113 4ezg_A Putative uncharacterize 99.7 6.7E-16 2.3E-20 124.3 11.6 147 57-223 42-190 (197)
114 2ell_A Acidic leucine-rich nuc 99.6 7.5E-16 2.6E-20 120.7 9.8 134 34-177 21-163 (168)
115 1w8a_A SLIT protein; signaling 99.6 1.1E-14 3.7E-19 116.7 12.1 129 40-175 11-140 (192)
116 4b8c_D Glucose-repressible alc 99.6 9E-16 3.1E-20 146.8 6.5 152 37-206 173-330 (727)
117 2je0_A Acidic leucine-rich nuc 99.6 2E-15 6.9E-20 115.8 7.2 129 59-200 17-148 (149)
118 2o6r_A Variable lymphocyte rec 99.6 3.2E-14 1.1E-18 112.3 14.3 129 39-175 9-138 (177)
119 2je0_A Acidic leucine-rich nuc 99.6 5.4E-15 1.8E-19 113.4 9.5 124 36-169 16-148 (149)
120 3ogk_B Coronatine-insensitive 99.6 3.1E-16 1.1E-20 146.8 2.9 10 283-292 402-411 (592)
121 1a9n_A U2A', U2A'; complex (nu 99.6 2.1E-15 7.2E-20 119.1 7.0 107 85-203 43-151 (176)
122 2wfh_A SLIT homolog 2 protein 99.6 3.5E-14 1.2E-18 113.8 13.8 127 40-175 13-140 (193)
123 3ogk_B Coronatine-insensitive 99.6 6.9E-15 2.4E-19 137.7 9.1 57 35-93 190-252 (592)
124 1a9n_A U2A', U2A'; complex (nu 99.5 3.1E-14 1.1E-18 112.3 9.6 132 34-174 16-153 (176)
125 1w8a_A SLIT protein; signaling 99.5 6.8E-14 2.3E-18 112.0 11.3 128 61-205 10-139 (192)
126 2p1m_B Transport inhibitor res 99.5 2.1E-15 7.2E-20 141.2 2.0 43 258-301 372-419 (594)
127 2p1m_B Transport inhibitor res 99.5 9.4E-15 3.2E-19 136.8 4.7 63 233-296 455-518 (594)
128 2wfh_A SLIT homolog 2 protein 99.5 3E-13 1E-17 108.3 12.8 124 62-203 13-137 (193)
129 2o6r_A Variable lymphocyte rec 99.5 6E-13 2.1E-17 104.9 13.5 131 60-207 8-139 (177)
130 4b8c_D Glucose-repressible alc 99.5 9.1E-14 3.1E-18 133.0 9.1 116 53-178 217-333 (727)
131 1dce_A Protein (RAB geranylger 99.5 3.6E-13 1.2E-17 125.2 12.8 120 85-220 442-566 (567)
132 1dce_A Protein (RAB geranylger 99.4 3.5E-13 1.2E-17 125.2 10.7 124 60-199 442-567 (567)
133 1ds9_A Outer arm dynein; leuci 99.4 1.7E-15 5.8E-20 122.0 -4.7 138 50-198 38-180 (198)
134 1ds9_A Outer arm dynein; leuci 99.4 2.7E-15 9.3E-20 120.8 -4.7 112 80-207 44-155 (198)
135 2r9u_A Variable lymphocyte rec 99.4 3.6E-12 1.2E-16 100.2 12.0 103 62-174 15-118 (174)
136 3g39_A Variable lymphocyte rec 99.4 4.8E-12 1.6E-16 99.1 11.6 103 62-174 12-115 (170)
137 3g39_A Variable lymphocyte rec 99.4 4.7E-12 1.6E-16 99.1 11.0 101 40-147 12-113 (170)
138 2r9u_A Variable lymphocyte rec 99.4 5.2E-12 1.8E-16 99.3 11.1 106 40-153 15-121 (174)
139 3sb4_A Hypothetical leucine ri 99.3 7.4E-12 2.5E-16 108.7 10.4 78 36-120 48-155 (329)
140 3un9_A NLR family member X1; l 99.1 1.8E-12 6.2E-17 114.3 -3.0 168 34-207 69-254 (372)
141 3sb4_A Hypothetical leucine ri 99.1 5.1E-10 1.7E-14 97.0 11.4 56 36-93 100-157 (329)
142 2ifg_A High affinity nerve gro 99.1 5.3E-10 1.8E-14 97.5 10.0 100 41-147 12-114 (347)
143 4fdw_A Leucine rich hypothetic 99.0 8.3E-09 2.8E-13 91.8 16.5 100 60-170 136-235 (401)
144 2ifg_A High affinity nerve gro 99.0 8.6E-10 2.9E-14 96.2 9.5 105 62-176 11-118 (347)
145 4fdw_A Leucine rich hypothetic 99.0 7.9E-09 2.7E-13 91.9 13.4 232 37-293 135-379 (401)
146 3un9_A NLR family member X1; l 98.9 3.7E-10 1.3E-14 99.5 1.2 161 57-226 70-251 (372)
147 2ra8_A Uncharacterized protein 98.5 3.5E-07 1.2E-11 80.0 8.1 204 36-267 106-339 (362)
148 1io0_A Tropomodulin; LRR prote 98.4 1.1E-07 3.9E-12 75.1 2.8 91 109-204 61-163 (185)
149 2ra8_A Uncharacterized protein 98.4 4.8E-07 1.6E-11 79.1 6.5 159 35-206 137-321 (362)
150 3e4g_A ATP synthase subunit S, 98.3 1.3E-06 4.6E-11 67.7 5.9 82 114-202 62-149 (176)
151 1io0_A Tropomodulin; LRR prote 98.2 5.7E-07 2E-11 71.0 2.8 111 57-174 34-164 (185)
152 3e4g_A ATP synthase subunit S, 98.2 3.6E-06 1.2E-10 65.3 6.5 68 230-299 81-154 (176)
153 4fs7_A Uncharacterized protein 98.2 3E-05 1E-09 68.6 13.4 58 109-169 158-216 (394)
154 3rw6_A Nuclear RNA export fact 98.0 5.5E-06 1.9E-10 69.0 6.0 81 81-168 167-258 (267)
155 3rw6_A Nuclear RNA export fact 98.0 4.8E-06 1.7E-10 69.3 5.1 65 133-205 167-233 (267)
156 4fs7_A Uncharacterized protein 97.9 8.5E-05 2.9E-09 65.6 11.9 62 76-144 154-216 (394)
157 4gt6_A Cell surface protein; l 97.7 0.00084 2.9E-08 59.2 15.2 60 230-293 307-366 (394)
158 4gt6_A Cell surface protein; l 97.6 0.0004 1.4E-08 61.3 10.0 109 77-202 258-367 (394)
159 4h09_A Hypothetical leucine ri 97.2 0.0022 7.4E-08 56.1 10.1 137 57-212 215-352 (379)
160 4h09_A Hypothetical leucine ri 97.1 0.0045 1.6E-07 54.0 11.6 146 57-221 192-340 (379)
161 3rfe_A Platelet glycoprotein I 96.5 0.0058 2E-07 44.7 6.2 34 86-124 33-66 (130)
162 3rfe_A Platelet glycoprotein I 96.3 0.0081 2.8E-07 43.9 6.1 37 137-174 32-68 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.2 0.0025 8.5E-08 50.2 2.8 16 187-202 152-167 (197)
164 1pgv_A TMD-1, tropomodulin TMD 95.6 0.019 6.5E-07 45.1 5.7 87 112-202 40-136 (197)
165 2lz0_A Uncharacterized protein 48.9 21 0.00072 24.1 3.9 37 132-170 16-52 (100)
166 2a5y_B CED-4; apoptosis; HET: 42.8 5.7 0.00019 36.3 0.3 18 1-18 456-473 (549)
No 1
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=1.4e-24 Score=197.39 Aligned_cols=148 Identities=21% Similarity=0.236 Sum_probs=117.7
Q ss_pred eecccchhhHhhhhcCCCCeeEEeecCCCCCC-CCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC
Q 037941 21 IQIISDLREVFEDLMQKDPIAISHPCRDIQEL-PEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS 98 (308)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 98 (308)
.+.+.++..+|. ..+++++|++++|.+..+ |..+ .+++|++|++++|.+.+.++...+.++++|++|++++|.+..
T Consensus 16 ~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~ 93 (455)
T 3v47_A 16 ICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQ 93 (455)
T ss_dssp ECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCE
T ss_pred CcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCc
Confidence 455778888886 578999999999999776 4445 999999999999998777777667899999999999999996
Q ss_pred C-CCCCCCcccccccccccEEeecCCcCcc-cchh--hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccc
Q 037941 99 L-PSTLGDVATVGVLKKLVIFSFRNSHIEQ-LPEE--IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTH 174 (308)
Q Consensus 99 l-p~~~~~~~~l~~l~~L~~L~l~~~~i~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 174 (308)
+ |.. ++.+++|++|++++|.++. ++.. +..+++|+.|++++|......|...+..+++|++|++++|.+.
T Consensus 94 ~~~~~------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 94 LETGA------FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp ECTTT------TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred cChhh------ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 6 555 7888888888888888873 4444 7788888888888887333335544677888888888888766
Q ss_pred cc
Q 037941 175 WE 176 (308)
Q Consensus 175 ~~ 176 (308)
+.
T Consensus 168 ~~ 169 (455)
T 3v47_A 168 SI 169 (455)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 2
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=4e-24 Score=195.59 Aligned_cols=264 Identities=19% Similarity=0.169 Sum_probs=183.3
Q ss_pred eecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC
Q 037941 21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS 98 (308)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 98 (308)
.+.+.++..+|. ...+++++|++++|.+..+++ .+ .+++|++|++++|.++...+..+ .++++|++|++++|.+..
T Consensus 17 ~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~L~~n~l~~ 94 (477)
T 2id5_A 17 LCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAF-NNLFNLRTLGLRSNRLKL 94 (477)
T ss_dssp ECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCCS
T ss_pred EeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhh-hCCccCCEEECCCCcCCc
Confidence 455677888884 457899999999999987754 44 89999999999999885545554 789999999999999999
Q ss_pred CCCCCCCcccccccccccEEeecCCcCccc-chhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccc
Q 037941 99 LPSTLGDVATVGVLKKLVIFSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEV 177 (308)
Q Consensus 99 lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 177 (308)
+|... +..+++|++|++++|.++.+ +..+..+++|+.|++++|. +..++...+..+++|+.|++++|.+...+
T Consensus 95 ~~~~~-----~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 95 IPLGV-----FTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp CCTTS-----STTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTT-CCEECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred cCccc-----ccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCc-cceeChhhccCCCCCCEEECCCCcCcccC
Confidence 98875 78899999999999998854 5678899999999999988 66665555888999999999999877322
Q ss_pred cCCcccchhhhhcCCCCCEEEeeeccCccccchhhc--cCCceeEeec------------------------cCccc---
Q 037941 178 EGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFL------------------------GDVWS--- 228 (308)
Q Consensus 178 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~------------------------~~~~~--- 228 (308)
...+..+++|+.|++++|.+..++...+. .+|+.|++.. +.+..
T Consensus 169 -------~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 241 (477)
T 2id5_A 169 -------TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241 (477)
T ss_dssp -------HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH
T ss_pred -------hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH
Confidence 24566777777777777776655543322 4555555443 33221
Q ss_pred -ccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccccccccccc
Q 037941 229 -WTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVS 302 (308)
Q Consensus 229 -~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~ 302 (308)
.+..+++|+.|+|+.|...........-+++|++|++++ +.++.+.+. ...++++|+.|++++| ++..++.
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~-~~~~l~~L~~L~L~~N-~l~~~~~ 313 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG-GQLAVVEPY-AFRGLNYLRVLNVSGN-QLTTLEE 313 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCS-SCCSEECTT-TBTTCTTCCEEECCSS-CCSCCCG
T ss_pred HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCC-CccceECHH-HhcCcccCCEEECCCC-cCceeCH
Confidence 123455566666655544333222222235666666665 344443221 1245677777777777 5666553
No 3
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=6.9e-24 Score=189.11 Aligned_cols=244 Identities=20% Similarity=0.231 Sum_probs=135.9
Q ss_pred CCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccc
Q 037941 36 QKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLK 113 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~ 113 (308)
.+++++|++++|.+..+++ .+ .+++|++|++++|.++. ++...+.++++|++|++++|.+..+|..+ ++.++
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-----~~~l~ 141 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGI-----FHNTP 141 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCT
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc-CCHHHhcCCCCCCEEECCCCccCcCCHHH-----hcCCC
Confidence 4455555555555544433 22 55555555555555542 22222345555555555555555555542 35555
Q ss_pred cccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccc-----------------
Q 037941 114 KLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHW----------------- 175 (308)
Q Consensus 114 ~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----------------- 175 (308)
+|++|++++|.++.++ ..+..+++|+.|++++|. ++.++. ..+++|+.+++++|.+.+
T Consensus 142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL---SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 217 (390)
T ss_dssp TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBCCG---GGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCC
T ss_pred CCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCcccc---ccccccceeecccccccccCCCCcceEEECCCCee
Confidence 5555555555555333 335555555555555554 333332 122222222222222111
Q ss_pred --cccC------------CcccchhhhhcCCCCCEEEeeeccCcccc-chhhc-cCCceeEeeccCcccc---cCCCCcC
Q 037941 176 --EVEG------------QNNASLAELNQLSRLTTLEMLILDAQVMP-RELFS-LGLERNKIFLGDVWSW---TGKYETS 236 (308)
Q Consensus 176 --~~~~------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~p-~~~~~-~~L~~l~i~~~~~~~~---~~~~~~L 236 (308)
.+.. ..-.....+..+++|++|++++|.+..++ ..+.. ++|+.|++..+.+... ...+++|
T Consensus 218 ~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L 297 (390)
T 3o6n_A 218 NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL 297 (390)
T ss_dssp CEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTC
T ss_pred eeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCC
Confidence 0000 00001234667788888888888877663 33333 7888888877665443 4567889
Q ss_pred ceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccc
Q 037941 237 RTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNAS 295 (308)
Q Consensus 237 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 295 (308)
+.|+|+.|.....+..+.. +++|++|++++ +.++.+ ....+++|+.|++++|+
T Consensus 298 ~~L~L~~n~l~~~~~~~~~-l~~L~~L~L~~-N~i~~~----~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 298 KVLDLSHNHLLHVERNQPQ-FDRLENLYLDH-NSIVTL----KLSTHHTLKNLTLSHND 350 (390)
T ss_dssp CEEECCSSCCCCCGGGHHH-HTTCSEEECCS-SCCCCC----CCCTTCCCSEEECCSSC
T ss_pred CEEECCCCcceecCccccc-cCcCCEEECCC-Ccccee----CchhhccCCEEEcCCCC
Confidence 9999998876665555555 48999999988 455553 34678899999998873
No 4
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=7e-24 Score=184.86 Aligned_cols=238 Identities=16% Similarity=0.181 Sum_probs=122.8
Q ss_pred CCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccc
Q 037941 36 QKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLK 113 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~ 113 (308)
.+.+++|++++|.+..+++. + .+++|++|++++|.++...|..+ ..+++|++|++++|.+..+|.. +. +
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~l~~~------~~--~ 121 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSKNQLKELPEK------MP--K 121 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT-TTCTTCCEEECCSSCCSBCCSS------CC--T
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHh-cCCCCCCEEECCCCcCCccChh------hc--c
Confidence 45566666666666555442 2 56666666666666553333333 4566666666666666666555 22 4
Q ss_pred cccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCc--cCcchhcCCCCCceEEccCCcccccccCCcccchhhhhc
Q 037941 114 KLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKS--IRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQ 190 (308)
Q Consensus 114 ~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 190 (308)
+|++|++++|.++.++. .+..+++|+.|++++|. ++. .....+..+++|+.|++++|.+...+. .+
T Consensus 122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--------~~-- 190 (330)
T 1xku_A 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--------GL-- 190 (330)
T ss_dssp TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS--------SC--
T ss_pred cccEEECCCCcccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCc--------cc--
Confidence 56666666666654442 35556666666666655 321 222225556666666666665552211 11
Q ss_pred CCCCCEEEeeeccCccccc-hhhc-cCCceeEeeccCccc----ccCCCCcCceEEEeecCchhhhhhHHHHhcccceee
Q 037941 191 LSRLTTLEMLILDAQVMPR-ELFS-LGLERNKIFLGDVWS----WTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLH 264 (308)
Q Consensus 191 l~~L~~L~l~~~~~~~~p~-~~~~-~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 264 (308)
.++|++|++++|.++.++. .+.. ++|+.|++..+.+.. .+..+++|+.|+|+.|.....+..+..+ ++|++|+
T Consensus 191 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l-~~L~~L~ 269 (330)
T 1xku_A 191 PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH-KYIQVVY 269 (330)
T ss_dssp CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTC-SSCCEEE
T ss_pred cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccC-CCcCEEE
Confidence 1456666666666555432 2222 556666655544322 2344556666666666544433434332 6666666
Q ss_pred cCCccchhhhhhccCC-----CCCCcccEEeccccc
Q 037941 265 LDKLNGLQNVLHELDG-----EGFPRLKHLLVQNAS 295 (308)
Q Consensus 265 l~~~~~~~~~~~~~~~-----~~~~~L~~L~l~~c~ 295 (308)
+++ +.++.++..... ...+.|+.|++.++|
T Consensus 270 l~~-N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 270 LHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CCS-SCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CCC-CcCCccChhhcCCcccccccccccceEeecCc
Confidence 665 344443322211 113456666666654
No 5
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=1.8e-24 Score=190.42 Aligned_cols=257 Identities=15% Similarity=0.181 Sum_probs=202.5
Q ss_pred cccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCC
Q 037941 23 IISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP 100 (308)
Q Consensus 23 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp 100 (308)
.+.++..+|. ...+++++|++++|.+..++. .+ .+++|++|++++|.+++..+.. +.++++|++|++++|.+..+|
T Consensus 39 ~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~ 116 (353)
T 2z80_A 39 SSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-FSSLGSLEHLDLSYNYLSNLS 116 (353)
T ss_dssp CSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSSCC
T ss_pred CCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh-cCCCCCCCEEECCCCcCCcCC
Confidence 3567777874 456799999999999988877 34 9999999999999988544444 478999999999999999988
Q ss_pred CCCCCcccccccccccEEeecCCcCcccch--hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccccc
Q 037941 101 STLGDVATVGVLKKLVIFSFRNSHIEQLPE--EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE 178 (308)
Q Consensus 101 ~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 178 (308)
... ++.+++|++|++++|.++.+|. .+..+++|+.|++++|..++.++...++.+++|++|++++|.+.+..
T Consensus 117 ~~~-----~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~- 190 (353)
T 2z80_A 117 SSW-----FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE- 190 (353)
T ss_dssp HHH-----HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEEC-
T ss_pred HhH-----hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccC-
Confidence 764 7889999999999999998887 68899999999999986577776655889999999999999888332
Q ss_pred CCcccchhhhhcCCCCCEEEeeeccCccccchhhc--cCCceeEeeccCcccc-------cCCCCcCceEEEeecCchhh
Q 037941 179 GQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFLGDVWSW-------TGKYETSRTLKLKLDNRMYL 249 (308)
Q Consensus 179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~~-------~~~~~~L~~L~L~~~~~~~~ 249 (308)
+..+..+++|++|++++|.++.+|..... ++|+.|++..+.+... ......++.++|+.+.....
T Consensus 191 ------~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~ 264 (353)
T 2z80_A 191 ------PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE 264 (353)
T ss_dssp ------TTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred ------HHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence 36788899999999999999888877653 8999999987765442 22356678888877654321
Q ss_pred -----hhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccccc
Q 037941 250 -----EHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASE 296 (308)
Q Consensus 250 -----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 296 (308)
+..+.. +++|++|++++ +.++.++... .+.+++|++|++.+|+-
T Consensus 265 ~l~~l~~~l~~-l~~L~~L~Ls~-N~l~~i~~~~-~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 265 SLFQVMKLLNQ-ISGLLELEFSR-NQLKSVPDGI-FDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp HHHHHHHHHHT-CTTCCEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSCB
T ss_pred chhhhHHHHhc-ccCCCEEECCC-CCCCccCHHH-HhcCCCCCEEEeeCCCc
Confidence 222333 48999999998 5666655432 36789999999999853
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=1.5e-24 Score=187.83 Aligned_cols=245 Identities=13% Similarity=0.149 Sum_probs=199.7
Q ss_pred CCCeeEEeecCCCC---CCCCcC-CCCCccEEEecC-CCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCccccc
Q 037941 37 KDPIAISHPCRDIQ---ELPEKL-ECPKLKLFFLFS-EKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVG 110 (308)
Q Consensus 37 ~~l~~L~l~~~~~~---~~~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~ 110 (308)
.++++|+++++.+. .+|..+ .+++|++|++++ |.+.+.+|..+ .++++|++|++++|.+. .+|.. +.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~------~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDF------LS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGG------GG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHH------Hh
Confidence 68999999999995 578877 999999999995 88888888776 78999999999999998 78887 89
Q ss_pred ccccccEEeecCCcCc-ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCC-CCceEEccCCcccccccCCcccchhhh
Q 037941 111 VLKKLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLP-RLEELYMGNSFTHWEVEGQNNASLAEL 188 (308)
Q Consensus 111 ~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~l 188 (308)
.+++|++|++++|.++ .+|..+..+++|+.|++++|.....+|.. +..++ +|+.|++++|.+.+.. +..+
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~-------~~~~ 194 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKI-------PPTF 194 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEEC-------CGGG
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccC-------ChHH
Confidence 9999999999999998 88999999999999999999944478877 78887 9999999999988433 3566
Q ss_pred hcCCCCCEEEeeeccCccccch-hhc-cCCceeEeeccCccc---ccCCCCcCceEEEeecCchhh-hhhHHHHhcccce
Q 037941 189 NQLSRLTTLEMLILDAQVMPRE-LFS-LGLERNKIFLGDVWS---WTGKYETSRTLKLKLDNRMYL-EHGIKMLLRRTED 262 (308)
Q Consensus 189 ~~l~~L~~L~l~~~~~~~~p~~-~~~-~~L~~l~i~~~~~~~---~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~ 262 (308)
..+. |+.|++++|.+...+.. +.. ++|+.|++..+.+.. ....+++|+.|+|+.|..... +..+.. +++|++
T Consensus 195 ~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~ 272 (313)
T 1ogq_A 195 ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHS 272 (313)
T ss_dssp GGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGG-CTTCCE
T ss_pred hCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhc-CcCCCE
Confidence 6776 99999999987754443 333 899999987765432 356778999999999877633 444544 499999
Q ss_pred eecCCccchhhhhhccCCCCCCcccEEeccccccccccc
Q 037941 263 LHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIV 301 (308)
Q Consensus 263 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~ 301 (308)
|++++ +.++...+.. ..+++|+.|++.+++.+...|
T Consensus 273 L~Ls~-N~l~~~ip~~--~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 273 LNVSF-NNLCGEIPQG--GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp EECCS-SEEEEECCCS--TTGGGSCGGGTCSSSEEESTT
T ss_pred EECcC-CcccccCCCC--ccccccChHHhcCCCCccCCC
Confidence 99998 4555333333 678999999999998776544
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.91 E-value=9e-24 Score=193.22 Aligned_cols=263 Identities=15% Similarity=0.119 Sum_probs=184.8
Q ss_pred ccchhhHhhh--hcCCCCeeEEeecCCCCCC-CCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941 24 ISDLREVFED--LMQKDPIAISHPCRDIQEL-PEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL 99 (308)
Q Consensus 24 ~~~~~~~~~~--~~~~~l~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 99 (308)
++.+..++.. ...+++++|++++|.+..+ |..+ .+++|++|++++|.++ .++...|.++++|++|++++|.+..+
T Consensus 41 ~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~ 119 (477)
T 2id5_A 41 KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVIL 119 (477)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEEECTTSCCCEE
T ss_pred CCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEEECCCCccccC
Confidence 3444444322 4577888888888888666 4444 8888888888888877 55665567888888888888888865
Q ss_pred CCCCCCcccccccccccEEeecCCcCccc-chhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccccc
Q 037941 100 PSTLGDVATVGVLKKLVIFSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE 178 (308)
Q Consensus 100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 178 (308)
++.. +..+++|++|++++|.++.+ +..+..+++|+.|++++|. ++.++...+..+++|+.|++++|.+.+...
T Consensus 120 ~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 120 LDYM-----FQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp CTTT-----TTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred ChhH-----ccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 4433 77788888888888877744 4567777888888888877 666776657777777777777777664332
Q ss_pred CCc-----------------ccchhhhhcCCCCCEEEeeeccCccccchhhc--cCCceeEeeccCccc----ccCCCCc
Q 037941 179 GQN-----------------NASLAELNQLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFLGDVWS----WTGKYET 235 (308)
Q Consensus 179 ~~~-----------------~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~----~~~~~~~ 235 (308)
... ...+.......+|+.|++++|.++.+|..... ++|+.|++..+.+.. .+..+++
T Consensus 194 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (477)
T 2id5_A 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273 (477)
T ss_dssp TCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTT
T ss_pred hhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccccc
Confidence 100 01112222334788888888888888865433 899999998776543 3567899
Q ss_pred CceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccc
Q 037941 236 SRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNAS 295 (308)
Q Consensus 236 L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 295 (308)
|+.|+|+.|...........-+++|++|++++ +.++.+.... ...+++|+.|++.+++
T Consensus 274 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG-NQLTTLEESV-FHSVGNLETLILDSNP 331 (477)
T ss_dssp CCEEECCSSCCSEECTTTBTTCTTCCEEECCS-SCCSCCCGGG-BSCGGGCCEEECCSSC
T ss_pred CCEEECCCCccceECHHHhcCcccCCEEECCC-CcCceeCHhH-cCCCcccCEEEccCCC
Confidence 99999999876655333333349999999998 5666655433 3678999999999884
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.9e-23 Score=194.98 Aligned_cols=244 Identities=20% Similarity=0.238 Sum_probs=154.8
Q ss_pred CCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccc
Q 037941 36 QKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLK 113 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~ 113 (308)
.+++++|++++|.+..+++ .+ .+++|++|++++|.+++ ++...|+++++|++|++++|.+..+|+.+ ++.++
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-----~~~l~ 147 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGI-----FHNTP 147 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCT
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCEEEeeCCCCCCCCHHH-----hccCC
Confidence 5566666666666655543 33 66666666666666653 33333456666677777666666666653 46666
Q ss_pred cccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccc-----------------
Q 037941 114 KLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHW----------------- 175 (308)
Q Consensus 114 ~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~----------------- 175 (308)
+|++|++++|.++.++ ..++.+++|+.|++++|. ++.++. +.+++|+.|++++|.+.+
T Consensus 148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l 223 (597)
T 3oja_B 148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL---SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSI 223 (597)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCCG---GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCC
T ss_pred CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcCh---hhhhhhhhhhcccCccccccCCchhheeeccCCcc
Confidence 6777777666666443 346666666777666665 444442 223333333333332221
Q ss_pred --cccC------------CcccchhhhhcCCCCCEEEeeeccCcccc-chhhc-cCCceeEeeccCccc---ccCCCCcC
Q 037941 176 --EVEG------------QNNASLAELNQLSRLTTLEMLILDAQVMP-RELFS-LGLERNKIFLGDVWS---WTGKYETS 236 (308)
Q Consensus 176 --~~~~------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~p-~~~~~-~~L~~l~i~~~~~~~---~~~~~~~L 236 (308)
.... ..-..+..+..+++|+.|++++|.+..++ ..+.. ++|+.|++..+.+.. ....+++|
T Consensus 224 ~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L 303 (597)
T 3oja_B 224 NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTL 303 (597)
T ss_dssp CEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTC
T ss_pred cccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCC
Confidence 0000 00001245778889999999999887764 44433 889999988776544 34568899
Q ss_pred ceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccc
Q 037941 237 RTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNAS 295 (308)
Q Consensus 237 ~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 295 (308)
+.|+|+.|.....+..+.. +++|++|++++ +.+..+ ..+.+++|+.|++++|+
T Consensus 304 ~~L~Ls~N~l~~i~~~~~~-l~~L~~L~L~~-N~l~~~----~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 304 KVLDLSHNHLLHVERNQPQ-FDRLENLYLDH-NSIVTL----KLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CEEECCSSCCCCCGGGHHH-HTTCSEEECCS-SCCCCC----CCCTTCCCSEEECCSSC
T ss_pred cEEECCCCCCCccCccccc-CCCCCEEECCC-CCCCCc----ChhhcCCCCEEEeeCCC
Confidence 9999999887766666655 49999999998 445543 35678999999999874
No 9
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=9.2e-24 Score=183.97 Aligned_cols=220 Identities=22% Similarity=0.273 Sum_probs=136.6
Q ss_pred CCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccc
Q 037941 36 QKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKK 114 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~ 114 (308)
..+++.|++++|.+..+|..+ .+++|++|++++|.++ .+|..+ .++++|++|++++|.+..+|.. ++.+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~------l~~l~~ 151 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPAS------IASLNR 151 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCCCCCGG------GGGCTT
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccccCcHH------HhcCcC
Confidence 466777777777776666655 6667777777776666 555544 4666677777777666666665 666666
Q ss_pred ccEEeecCCcC-cccchhhhC---------cCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccc
Q 037941 115 LVIFSFRNSHI-EQLPEEIGQ---------LTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNAS 184 (308)
Q Consensus 115 L~~L~l~~~~i-~~l~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 184 (308)
|++|++++|.+ ..+|..++. +++|+.|++++|. ++.+|.. ++.+++|++|++++|.+.+ .
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~-l~~l~~L~~L~L~~N~l~~--------l 221 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPAS-IANLQNLKSLKIRNSPLSA--------L 221 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGG-GGGCTTCCEEEEESSCCCC--------C
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHh-hcCCCCCCEEEccCCCCCc--------C
Confidence 77777766543 355554443 6666666666665 4566655 5666666666666666551 2
Q ss_pred hhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccccCCCCcCceEEEeecCchhh-hhhHHHHhccccee
Q 037941 185 LAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYL-EHGIKMLLRRTEDL 263 (308)
Q Consensus 185 ~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L 263 (308)
+..+..+++|+.|++++|.+.. ..+..++.+++|+.|+|+.|..... +..+.. +++|++|
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~------------------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~-l~~L~~L 282 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALR------------------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKL 282 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCC------------------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG-CTTCCEE
T ss_pred chhhccCCCCCEEECcCCcchh------------------hhHHHhcCCCCCCEEECCCCCchhhcchhhhc-CCCCCEE
Confidence 2345566666666666654211 1233455667777777777654433 333333 4888888
Q ss_pred ecCCccchhhhhhccCCCCCCcccEEecccc
Q 037941 264 HLDKLNGLQNVLHELDGEGFPRLKHLLVQNA 294 (308)
Q Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 294 (308)
++++|+.+..++..+ ..+++|+.+.+...
T Consensus 283 ~L~~n~~~~~iP~~l--~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 283 DLRGCVNLSRLPSLI--AQLPANCIILVPPH 311 (328)
T ss_dssp ECTTCTTCCCCCGGG--GGSCTTCEEECCGG
T ss_pred eCCCCCchhhccHHH--hhccCceEEeCCHH
Confidence 888877777665544 56777777777653
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.91 E-value=8.5e-24 Score=191.50 Aligned_cols=231 Identities=20% Similarity=0.248 Sum_probs=167.1
Q ss_pred ecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941 22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL 99 (308)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 99 (308)
+.+.++.++|. ...++++.|++++|.+..++. .+ .+++|++|++++|.++. ++...|.++++|++|++++|.+..+
T Consensus 50 c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~ 127 (440)
T 3zyj_A 50 CVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELFDNRLTTI 127 (440)
T ss_dssp CCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCE-ECGGGGTTCSSCCEEECCSSCCSSC
T ss_pred eCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCc-cChhhccCCccCCEEECCCCcCCee
Confidence 44566777773 456788889999888877654 33 88899999999888874 4444457888999999999988888
Q ss_pred CCCCCCcccccccccccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccccc
Q 037941 100 PSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE 178 (308)
Q Consensus 100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 178 (308)
|... +..+++|++|++++|.++.++. .+..+++|+.|++++|..++.++...+..+++|+.|++++|.+...
T Consensus 128 ~~~~-----~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-- 200 (440)
T 3zyj_A 128 PNGA-----FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-- 200 (440)
T ss_dssp CTTT-----SCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC--
T ss_pred CHhH-----hhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc--
Confidence 7754 7888889999999998887764 5788889999999887767888877688888999999998887722
Q ss_pred CCcccchhhhhcCCCCCEEEeeeccCccccchhhc--cCCceeEeeccCccc----ccCCCCcCceEEEeecCchhhhhh
Q 037941 179 GQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFLGDVWS----WTGKYETSRTLKLKLDNRMYLEHG 252 (308)
Q Consensus 179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~~~ 252 (308)
..+..+++|+.|++++|.++.++...+. ++|+.|++..+.+.. .+..+++|+.|+|+.|........
T Consensus 201 -------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 273 (440)
T 3zyj_A 201 -------PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273 (440)
T ss_dssp -------CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred -------cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh
Confidence 2467788889999988887776544332 677777766555432 244566667777766655544433
Q ss_pred HHHHhcccceeecCCc
Q 037941 253 IKMLLRRTEDLHLDKL 268 (308)
Q Consensus 253 ~~~~~~~L~~L~l~~~ 268 (308)
...-+++|+.|++++.
T Consensus 274 ~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHN 289 (440)
T ss_dssp TTSSCTTCCEEECCSS
T ss_pred HhccccCCCEEEcCCC
Confidence 3232366666666653
No 11
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.91 E-value=8.4e-24 Score=192.20 Aligned_cols=230 Identities=23% Similarity=0.212 Sum_probs=145.6
Q ss_pred ecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941 22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL 99 (308)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 99 (308)
+.+.++..+|. ...+++++|++++|.+..+++ .+ .+++|++|++++|.++.. +...|.++++|++|++++|.+..+
T Consensus 61 c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~ 138 (452)
T 3zyi_A 61 CTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVI 138 (452)
T ss_dssp CCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBC
T ss_pred ECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCcc
Confidence 34455666663 345677778887777766543 33 777788888877777643 333346777788888877777777
Q ss_pred CCCCCCcccccccccccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccccc
Q 037941 100 PSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE 178 (308)
Q Consensus 100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 178 (308)
|... +..+++|++|++++|.++.+|. .+..+++|+.|++++|..++.++...+..+++|+.|++++|.+.+.
T Consensus 139 ~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-- 211 (452)
T 3zyi_A 139 PSGA-----FEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-- 211 (452)
T ss_dssp CTTT-----SSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--
T ss_pred Chhh-----hcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--
Confidence 6654 6777778888887777776664 5677777888887776667777766677777788888777777622
Q ss_pred CCcccchhhhhcCCCCCEEEeeeccCccccchhhc--cCCceeEeeccCccc----ccCCCCcCceEEEeecCchhhhhh
Q 037941 179 GQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFLGDVWS----WTGKYETSRTLKLKLDNRMYLEHG 252 (308)
Q Consensus 179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~~~ 252 (308)
..+..+++|+.|++++|.++.++...+. ++|+.|++..+.+.. .+..+++|+.|+|+.|........
T Consensus 212 -------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 284 (452)
T 3zyi_A 212 -------PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284 (452)
T ss_dssp -------CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred -------ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH
Confidence 2356677777777777776665443222 566666655444322 234455555555555544433333
Q ss_pred HHHHhcccceeecCC
Q 037941 253 IKMLLRRTEDLHLDK 267 (308)
Q Consensus 253 ~~~~~~~L~~L~l~~ 267 (308)
....+++|+.|++.+
T Consensus 285 ~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 285 LFTPLRYLVELHLHH 299 (452)
T ss_dssp SSTTCTTCCEEECCS
T ss_pred HhccccCCCEEEccC
Confidence 222235555555554
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=1.6e-23 Score=178.89 Aligned_cols=258 Identities=17% Similarity=0.187 Sum_probs=192.8
Q ss_pred eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCC-CC
Q 037941 21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFH-FP 97 (308)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~ 97 (308)
.+.+.++..+|. ...+++++|++++|.+..+++. + .+++|++|++++|.++...+.. +.++++|++|++++|. +.
T Consensus 17 ~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~l~ 94 (285)
T 1ozn_A 17 SCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSDNAQLR 94 (285)
T ss_dssp ECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSCTTCC
T ss_pred EcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh-cCCccCCCEEeCCCCCCcc
Confidence 455677888884 4578999999999999887754 4 8999999999999988544444 4789999999999997 88
Q ss_pred CCCCCCCCcccccccccccEEeecCCcCccc-chhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccc
Q 037941 98 SLPSTLGDVATVGVLKKLVIFSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWE 176 (308)
Q Consensus 98 ~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 176 (308)
.+++.. +..+++|++|++++|.++.+ |..+..+++|+.|++++|. ++.++...++.+++|+.|++++|.+.+.
T Consensus 95 ~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 95 SVDPAT-----FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CCCTTT-----TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ccCHHH-----hcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhccCCCccEEECCCCccccc
Confidence 875443 88999999999999999966 5668899999999999998 7777776688999999999999988833
Q ss_pred ccCCcccchhhhhcCCCCCEEEeeeccCccc-cchhhc-cCCceeEeeccCccc----ccCCCCcCceEEEeecCchhhh
Q 037941 177 VEGQNNASLAELNQLSRLTTLEMLILDAQVM-PRELFS-LGLERNKIFLGDVWS----WTGKYETSRTLKLKLDNRMYLE 250 (308)
Q Consensus 177 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-p~~~~~-~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~ 250 (308)
+. ..+..+++|+.|++++|.++.+ |..+.. ++|+.|++..+.+.. .+..+++|+.|+|+.|.... +
T Consensus 169 ~~-------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c-~ 240 (285)
T 1ozn_A 169 PE-------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-D 240 (285)
T ss_dssp CT-------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC-S
T ss_pred CH-------HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC-C
Confidence 22 3578899999999999998877 444443 889999988776544 35678899999999886543 2
Q ss_pred hhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccc
Q 037941 251 HGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNA 294 (308)
Q Consensus 251 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 294 (308)
......+..++.+...........+..+....+..+...++.+|
T Consensus 241 ~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 241 CRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp GGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred CCcHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 22223334455555443222222233343344566676677776
No 13
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=9.1e-23 Score=178.93 Aligned_cols=251 Identities=16% Similarity=0.134 Sum_probs=166.4
Q ss_pred ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCC
Q 037941 24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL 103 (308)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~ 103 (308)
+..+..++.....+++++|++++|.+..++....+++|++|++++|.+.. ++. +..+++|++|++++|.....++.
T Consensus 75 ~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~-~~~--~~~l~~L~~L~l~~n~~~~~~~~- 150 (347)
T 4fmz_A 75 GNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISD-ISP--LANLTKMYSLNLGANHNLSDLSP- 150 (347)
T ss_dssp SSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCC-CGG--GTTCTTCCEEECTTCTTCCCCGG-
T ss_pred CCccccchhhhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccC-chh--hccCCceeEEECCCCCCcccccc-
Confidence 34555555556688999999999999888765599999999999998873 444 46899999999999865544443
Q ss_pred CCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCccc
Q 037941 104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNA 183 (308)
Q Consensus 104 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 183 (308)
+..+++|++|++++|.+..++. +..+++|+.|++++|. +..++. +..+++|+.+++++|.+.+.
T Consensus 151 -----~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~------- 214 (347)
T 4fmz_A 151 -----LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LASLTSLHYFTAYVNQITDI------- 214 (347)
T ss_dssp -----GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCCC-------
T ss_pred -----hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--ccCCCccceeecccCCCCCC-------
Confidence 7778888888888888777666 7788888888888887 666655 66777777777777776621
Q ss_pred chhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCccc--ccCCCCcCceEEEeecCchhhhhhHHHHhcccc
Q 037941 184 SLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWS--WTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTE 261 (308)
Q Consensus 184 ~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~ 261 (308)
..+..+++|++|++++|.++.++.....++|+.|++..+.+.. ....+++|+.|+++.|..... ..+.. +++|+
T Consensus 215 --~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~-l~~L~ 290 (347)
T 4fmz_A 215 --TPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDI-SVLNN-LSQLN 290 (347)
T ss_dssp --GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGG-CTTCS
T ss_pred --chhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCC-hhhcC-CCCCC
Confidence 1255667777777777776666652223666666665554332 245566667777666644432 22222 36666
Q ss_pred eeecCCccchhhhhhccCCCCCCcccEEeccccccccccc
Q 037941 262 DLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIV 301 (308)
Q Consensus 262 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~ 301 (308)
+|+++++. ++...+.. ...+++|+.|++++|+ +..++
T Consensus 291 ~L~L~~n~-l~~~~~~~-l~~l~~L~~L~L~~n~-l~~~~ 327 (347)
T 4fmz_A 291 SLFLNNNQ-LGNEDMEV-IGGLTNLTTLFLSQNH-ITDIR 327 (347)
T ss_dssp EEECCSSC-CCGGGHHH-HHTCTTCSEEECCSSS-CCCCG
T ss_pred EEECcCCc-CCCcChhH-hhccccCCEEEccCCc-ccccc
Confidence 66666643 33322211 1345666666666663 44443
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=7.9e-24 Score=204.66 Aligned_cols=259 Identities=13% Similarity=0.115 Sum_probs=190.4
Q ss_pred hHhhh-hcCCCCeeEEeecCCCCC------------------CCCcC---CCCCccEEEecCCCCcCCCCchhhcCCCCc
Q 037941 29 EVFED-LMQKDPIAISHPCRDIQE------------------LPEKL---ECPKLKLFFLFSEKLSLVIPDLFFEGVPSL 86 (308)
Q Consensus 29 ~~~~~-~~~~~l~~L~l~~~~~~~------------------~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 86 (308)
.+|.. ..+++|+.|++++|.+.. +|..+ .+++|++|++++|.+.+.+|..+ .++++|
T Consensus 439 ~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L 517 (876)
T 4ecn_A 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPEL 517 (876)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSC
T ss_pred chhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCC
Confidence 35643 568899999999999976 88876 69999999999999998888766 789999
Q ss_pred cEEEccCCC-CCC--CCCCCCCcc-cccccccccEEeecCCcCcccch--hhhCcCCCCEEecCCCCCCCccCcchhcCC
Q 037941 87 QVLSLNGFH-FPS--LPSTLGDVA-TVGVLKKLVIFSFRNSHIEQLPE--EIGQLTRLKLLDLSTCSKLKSIRPNVISNL 160 (308)
Q Consensus 87 ~~L~l~~~~-~~~--lp~~~~~~~-~l~~l~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l 160 (308)
++|++++|. ++. +|..++.+. .+..+++|++|++++|.++.+|. .++.+++|+.|++++|. ++.+| . ++.+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~-~~~L 594 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-A-FGTN 594 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-C-CCTT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-h-hcCC
Confidence 999999998 874 887621111 12334499999999999999998 89999999999999998 66888 4 8999
Q ss_pred CCCceEEccCCcccccccCCcccchhhhhcCCC-CCEEEeeeccCccccchhhc---cCCceeEeeccCcccccC-----
Q 037941 161 PRLEELYMGNSFTHWEVEGQNNASLAELNQLSR-LTTLEMLILDAQVMPRELFS---LGLERNKIFLGDVWSWTG----- 231 (308)
Q Consensus 161 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~p~~~~~---~~L~~l~i~~~~~~~~~~----- 231 (308)
++|+.|++++|.+. ..+..+..+++ |+.|++++|.++.+|..+.. .+|+.|++..+.+....+
T Consensus 595 ~~L~~L~Ls~N~l~--------~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~ 666 (876)
T 4ecn_A 595 VKLTDLKLDYNQIE--------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666 (876)
T ss_dssp SEESEEECCSSCCS--------CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSC
T ss_pred CcceEEECcCCccc--------cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhh
Confidence 99999999999988 33456888888 99999999999888877654 348888887666532211
Q ss_pred ----CCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCC------CCCCcccEEeccccccccccc
Q 037941 232 ----KYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDG------EGFPRLKHLLVQNASEILYIV 301 (308)
Q Consensus 232 ----~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~~~L~~L~l~~c~~l~~i~ 301 (308)
..++|+.|+|+.|.....+..+...+++|+.|++++ +.++.++..... ..+++|+.|++++| ++..+|
T Consensus 667 l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~-N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp 744 (876)
T 4ecn_A 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN-NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLS 744 (876)
T ss_dssp TTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS-CCCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCC
T ss_pred hccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC-CcCCccChHHhccccccccccCCccEEECCCC-CCccch
Confidence 223677777777766655554443346677777766 344443322211 11226666666666 555555
No 15
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=1.3e-23 Score=183.24 Aligned_cols=249 Identities=18% Similarity=0.196 Sum_probs=161.1
Q ss_pred ccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCC
Q 037941 24 ISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS 101 (308)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~ 101 (308)
+.++..+|. ...+++++|++++|.+..+++ .+ .+++|++|++++|.++...+.. +.++++|++|++++|.+..+|.
T Consensus 42 ~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~l~~ 119 (332)
T 2ft3_A 42 DLGLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKLYISKNHLVEIPP 119 (332)
T ss_dssp SSCCSSCCS-CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-STTCTTCCEEECCSSCCCSCCS
T ss_pred CCCccccCC-CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH-hhCcCCCCEEECCCCcCCccCc
Confidence 344555552 235677777777777766544 33 7777777777777766433433 3667777777777777777777
Q ss_pred CCCCcccccccccccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCc--cCcchhcCCCCCceEEccCCccccccc
Q 037941 102 TLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKS--IRPNVISNLPRLEELYMGNSFTHWEVE 178 (308)
Q Consensus 102 ~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~ 178 (308)
. +. ++|++|++++|.++.+|. .+..+++|+.|++++|. ++. .....+..+ +|+.|++++|.+...+.
T Consensus 120 ~------~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~ 189 (332)
T 2ft3_A 120 N------LP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTGIPK 189 (332)
T ss_dssp S------CC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS
T ss_pred c------cc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCccCc
Confidence 6 32 677777777777776654 36677777777777776 331 222225555 77777777777663221
Q ss_pred CCcccchhhhhcCCCCCEEEeeeccCccccch-hhc-cCCceeEeeccCccc----ccCCCCcCceEEEeecCchhhhhh
Q 037941 179 GQNNASLAELNQLSRLTTLEMLILDAQVMPRE-LFS-LGLERNKIFLGDVWS----WTGKYETSRTLKLKLDNRMYLEHG 252 (308)
Q Consensus 179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~-~~~-~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~~~ 252 (308)
.+ .++|++|++++|.++.++.. +.. ++|+.|++..+.+.. ++..+++|+.|+|+.|.....+..
T Consensus 190 --------~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 259 (332)
T 2ft3_A 190 --------DL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG 259 (332)
T ss_dssp --------SS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT
T ss_pred --------cc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh
Confidence 11 25788888888887777643 322 788888887665433 356778888888888876655555
Q ss_pred HHHHhcccceeecCCccchhhhhhccCCC-----CCCcccEEecccccc
Q 037941 253 IKMLLRRTEDLHLDKLNGLQNVLHELDGE-----GFPRLKHLLVQNASE 296 (308)
Q Consensus 253 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~c~~ 296 (308)
+..+ ++|++|++++ +.++.++...... .++.|+.|++.+++-
T Consensus 260 l~~l-~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 260 LPDL-KLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp GGGC-TTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred hhcC-ccCCEEECCC-CCCCccChhHccccccccccccccceEeecCcc
Confidence 5553 8888999887 5666654432221 256788888888863
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.1e-23 Score=195.98 Aligned_cols=254 Identities=16% Similarity=0.197 Sum_probs=175.3
Q ss_pred cCCCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941 35 MQKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL 112 (308)
Q Consensus 35 ~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l 112 (308)
..++++.+++.++.+..+|+.. .+++|++|++++|.+++..+.. +..+++|++|++++|.+..+|+.. ++.+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l 122 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYA-FAYAHTIQKLYMGFNAIRYLPPHV-----FQNV 122 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCCCCCTTT-----TTTC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHH-hcCCCCCCEEECCCCcCCCCCHHH-----HcCC
Confidence 3678999999999999998875 8999999999999988544444 579999999999999999888764 7999
Q ss_pred ccccEEeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCccc--------
Q 037941 113 KKLVIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNA-------- 183 (308)
Q Consensus 113 ~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------- 183 (308)
++|++|++++|.++.+|.. ++.+++|+.|++++|. +..++...++.+++|+.|++++|.+.+...+....
T Consensus 123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~ 201 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 201 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCS
T ss_pred CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhccc
Confidence 9999999999999988876 5899999999999998 66666655899999999999999988432210000
Q ss_pred -chhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcc--cccCCCCcCceEEEeecCchhhh-hhHHHHhcc
Q 037941 184 -SLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVW--SWTGKYETSRTLKLKLDNRMYLE-HGIKMLLRR 259 (308)
Q Consensus 184 -~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~~ 259 (308)
.+..+...+.|+.|++++|.+..+|.... .+|+.|++..+.+. .+...+++|+.|+|+.|...... ..+.. +++
T Consensus 202 n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~-~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~ 279 (597)
T 3oja_B 202 NLLSTLAIPIAVEELDASHNSINVVRGPVN-VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQR 279 (597)
T ss_dssp SCCSEEECCTTCSEEECCSSCCCEEECSCC-SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT-CSS
T ss_pred CccccccCCchhheeeccCCcccccccccC-CCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcC-ccC
Confidence 00111223345555555555554444322 45666666554432 24556667777777666544432 22222 366
Q ss_pred cceeecCCccchhhhhhccCCCCCCcccEEeccccccccccc
Q 037941 260 TEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIV 301 (308)
Q Consensus 260 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~ 301 (308)
|+.|++++ +.++.++.. ...+++|+.|++++| .+..+|
T Consensus 280 L~~L~Ls~-N~l~~l~~~--~~~l~~L~~L~Ls~N-~l~~i~ 317 (597)
T 3oja_B 280 LERLYISN-NRLVALNLY--GQPIPTLKVLDLSHN-HLLHVE 317 (597)
T ss_dssp CCEEECTT-SCCCEEECS--SSCCTTCCEEECCSS-CCCCCG
T ss_pred CCEEECCC-CCCCCCCcc--cccCCCCcEEECCCC-CCCccC
Confidence 66666666 444443221 244566666666666 444444
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=2.2e-22 Score=176.47 Aligned_cols=247 Identities=14% Similarity=0.161 Sum_probs=192.7
Q ss_pred ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCC
Q 037941 24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL 103 (308)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~ 103 (308)
+..+..++.....+++++|++++|.+..+++...+++|++|++++|.++. ++. +.++++|++|++++|.+..+|.
T Consensus 53 ~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~~~--~~~l~~L~~L~l~~n~i~~~~~-- 127 (347)
T 4fmz_A 53 GEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-ISA--LQNLTNLRELYLNEDNISDISP-- 127 (347)
T ss_dssp SSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG--GTTCTTCSEEECTTSCCCCCGG--
T ss_pred CCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccC-chH--HcCCCcCCEEECcCCcccCchh--
Confidence 45555566556688999999999999888874499999999999998874 442 5789999999999999988876
Q ss_pred CCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCccc
Q 037941 104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNA 183 (308)
Q Consensus 104 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 183 (308)
+..+++|++|++++|.....+..+..+++|+.|++++|. +..++. +..+++|+.|++++|.+.+
T Consensus 128 -----~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~--~~~l~~L~~L~l~~n~l~~-------- 191 (347)
T 4fmz_A 128 -----LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP--IANLTDLYSLSLNYNQIED-------- 191 (347)
T ss_dssp -----GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECTTSCCCC--------
T ss_pred -----hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh--hccCCCCCEEEccCCcccc--------
Confidence 778999999999999655344448999999999999998 666665 7889999999999998772
Q ss_pred chhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccc--cCCCCcCceEEEeecCchhhhhhHHHHhcccc
Q 037941 184 SLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSW--TGKYETSRTLKLKLDNRMYLEHGIKMLLRRTE 261 (308)
Q Consensus 184 ~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~ 261 (308)
...+..+++|+.+++++|.+..++.....++|+.|++..+.+... ...+++|+.|+++.|..... ..+.. +++|+
T Consensus 192 -~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~-l~~L~ 268 (347)
T 4fmz_A 192 -ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDI-NAVKD-LTKLK 268 (347)
T ss_dssp -CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GGGTT-CTTCC
T ss_pred -cccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCC-hhHhc-CCCcC
Confidence 223778999999999999988877743448999999887765443 56788999999998865553 33444 48999
Q ss_pred eeecCCccchhhhhhccCCCCCCcccEEeccccccccc
Q 037941 262 DLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILY 299 (308)
Q Consensus 262 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 299 (308)
+|+++++ .++.+.. ...+++|+.|++++| .+..
T Consensus 269 ~L~l~~n-~l~~~~~---~~~l~~L~~L~L~~n-~l~~ 301 (347)
T 4fmz_A 269 MLNVGSN-QISDISV---LNNLSQLNSLFLNNN-QLGN 301 (347)
T ss_dssp EEECCSS-CCCCCGG---GGGCTTCSEEECCSS-CCCG
T ss_pred EEEccCC-ccCCChh---hcCCCCCCEEECcCC-cCCC
Confidence 9999984 5555422 256789999999998 4443
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=3.8e-24 Score=202.23 Aligned_cols=225 Identities=10% Similarity=0.093 Sum_probs=177.7
Q ss_pred chhhHhhh-hcCCCCeeEEeecCCCCC------------------CCCcC---CCCCccEEEecCCCCcCCCCchhhcCC
Q 037941 26 DLREVFED-LMQKDPIAISHPCRDIQE------------------LPEKL---ECPKLKLFFLFSEKLSLVIPDLFFEGV 83 (308)
Q Consensus 26 ~~~~~~~~-~~~~~l~~L~l~~~~~~~------------------~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l 83 (308)
.+..+|.. ...+++++|++++|.+.. +|..+ .+++|++|++++|.+.+.+|..+ .++
T Consensus 194 ~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l 272 (636)
T 4eco_A 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KAL 272 (636)
T ss_dssp EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTC
T ss_pred CCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcC
Confidence 33345643 568899999999999976 88766 49999999999999998888776 689
Q ss_pred CCccEEEccCCC-CC--CCCCCCCCccccccc------ccccEEeecCCcCcccch--hhhCcCCCCEEecCCCCCCCcc
Q 037941 84 PSLQVLSLNGFH-FP--SLPSTLGDVATVGVL------KKLVIFSFRNSHIEQLPE--EIGQLTRLKLLDLSTCSKLKSI 152 (308)
Q Consensus 84 ~~L~~L~l~~~~-~~--~lp~~~~~~~~l~~l------~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~ 152 (308)
++|++|++++|. ++ .+|.. ++.+ ++|++|++++|.++.+|. .++.+++|+.|++++|.....+
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~------~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~i 346 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDD------WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL 346 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHH------HHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEEC
T ss_pred CCCCEEECcCCCCCccccchHH------HHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccch
Confidence 999999999998 87 48887 6665 999999999999999998 8999999999999999833388
Q ss_pred CcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCC-CCEEEeeeccCccccchhhc---cCCceeEeeccCccc
Q 037941 153 RPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSR-LTTLEMLILDAQVMPRELFS---LGLERNKIFLGDVWS 228 (308)
Q Consensus 153 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~p~~~~~---~~L~~l~i~~~~~~~ 228 (308)
| . ++.+++|+.|++++|.+. ..+..+..+++ |+.|++++|.++.+|..+.. .+|+.|++..+.+..
T Consensus 347 p-~-~~~l~~L~~L~L~~N~l~--------~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ 416 (636)
T 4eco_A 347 P-A-FGSEIKLASLNLAYNQIT--------EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS 416 (636)
T ss_dssp C-C-CEEEEEESEEECCSSEEE--------ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred h-h-hCCCCCCCEEECCCCccc--------cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCC
Confidence 8 4 889999999999999887 34456888888 99999999998888887654 367888877665432
Q ss_pred ----ccC-------CCCcCceEEEeecCchhhhhhHHHHhcccceeecCC
Q 037941 229 ----WTG-------KYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDK 267 (308)
Q Consensus 229 ----~~~-------~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 267 (308)
.++ .+++|+.|+|+.|.....+..+...+++|++|++++
T Consensus 417 ~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 417 VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 233 455777788877766554444444346666666666
No 19
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=4.7e-23 Score=198.88 Aligned_cols=251 Identities=17% Similarity=0.135 Sum_probs=176.6
Q ss_pred CCCCeeEEeecCCCC-CCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCccccccc
Q 037941 36 QKDPIAISHPCRDIQ-ELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVL 112 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~~l 112 (308)
.+++++|++++|.+. .+|..+ .+++|++|++++|.+++.+|..+ ..+++|++|++++|.+. .+|.. +..+
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~------~~~l 465 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQE------LMYV 465 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGG------GGGC
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHH------HcCC
Confidence 456777777777773 556555 78888888888888776666665 67888888888888887 56666 7788
Q ss_pred ccccEEeecCCcCc-ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcC
Q 037941 113 KKLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQL 191 (308)
Q Consensus 113 ~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l 191 (308)
++|++|++++|.++ .+|..++.+++|+.|++++|.....+|.. ++.+++|++|++++|.+.+.. +..+..+
T Consensus 466 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~-------p~~l~~l 537 (768)
T 3rgz_A 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNSFSGNI-------PAELGDC 537 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCEEEC-------CGGGGGC
T ss_pred CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCcccCcC-------CHHHcCC
Confidence 88888888888877 77777888888888888888855567766 778888888888888877333 3677888
Q ss_pred CCCCEEEeeeccCc-cccchhhc---------------------------------------------------------
Q 037941 192 SRLTTLEMLILDAQ-VMPRELFS--------------------------------------------------------- 213 (308)
Q Consensus 192 ~~L~~L~l~~~~~~-~~p~~~~~--------------------------------------------------------- 213 (308)
++|+.|++++|.+. .+|..++.
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 88899998888754 55554321
Q ss_pred --------------cCCceeEeeccC----cccccCCCCcCceEEEeecCchhh-hhhHHHHhcccceeecCCccchhhh
Q 037941 214 --------------LGLERNKIFLGD----VWSWTGKYETSRTLKLKLDNRMYL-EHGIKMLLRRTEDLHLDKLNGLQNV 274 (308)
Q Consensus 214 --------------~~L~~l~i~~~~----~~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~ 274 (308)
.+|+.|+++.+. ++..++.++.|+.|+|+.|..... +..+..+ ++|+.|++++++....+
T Consensus 618 ~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L-~~L~~LdLs~N~l~g~i 696 (768)
T 3rgz_A 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL-RGLNILDLSSNKLDGRI 696 (768)
T ss_dssp CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC-TTCCEEECCSSCCEECC
T ss_pred ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCC-CCCCEEECCCCcccCcC
Confidence 345556665443 344566777888888888766533 4444443 88888888874333333
Q ss_pred hhccCCCCCCcccEEeccccccccccccCc
Q 037941 275 LHELDGEGFPRLKHLLVQNASEILYIVSSV 304 (308)
Q Consensus 275 ~~~~~~~~~~~L~~L~l~~c~~l~~i~~~~ 304 (308)
+..+ +.++.|++|++++|+--..||...
T Consensus 697 p~~l--~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 697 PQAM--SALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp CGGG--GGCCCCSEEECCSSEEEEECCSSS
T ss_pred ChHH--hCCCCCCEEECcCCcccccCCCch
Confidence 3323 567788888888886666666543
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=1.5e-23 Score=198.16 Aligned_cols=253 Identities=13% Similarity=0.118 Sum_probs=119.5
Q ss_pred CCCCeeEEeecCC-CC--CCCCcC-CC------CCccEEEecCCCCcCCCCc-hhhcCCCCccEEEccCCCCC-CCCCCC
Q 037941 36 QKDPIAISHPCRD-IQ--ELPEKL-EC------PKLKLFFLFSEKLSLVIPD-LFFEGVPSLQVLSLNGFHFP-SLPSTL 103 (308)
Q Consensus 36 ~~~l~~L~l~~~~-~~--~~~~~~-~~------~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~-~lp~~~ 103 (308)
.+++++|++++|. +. .+|..+ .+ ++|++|++++|.++ .+|. ..++++++|++|++++|.+. .+| .
T Consensus 272 l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~- 348 (636)
T 4eco_A 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-A- 348 (636)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-C-
T ss_pred CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-h-
Confidence 4455555555554 42 244333 22 45555555555554 4444 11244555555555555554 444 3
Q ss_pred CCcccccccccccEEeecCCcCcccchhhhCcCC-CCEEecCCCCCCCccCcchhcCCC--CCceEEccCCcccccccCC
Q 037941 104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTR-LKLLDLSTCSKLKSIRPNVISNLP--RLEELYMGNSFTHWEVEGQ 180 (308)
Q Consensus 104 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~ 180 (308)
++.+++|++|++++|.++.+|..+..+++ |+.|++++|. ++.+|.. +..+. +|+.|++++|.+.+..+..
T Consensus 349 -----~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~ 421 (636)
T 4eco_A 349 -----FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNI-FDAKSVSVMSAIDFSYNEIGSVDGKN 421 (636)
T ss_dssp -----CEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSC-CCTTCSSCEEEEECCSSCTTTTTTCS
T ss_pred -----hCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-Ccccchh-hhhcccCccCEEECcCCcCCCcchhh
Confidence 44444455555544444444444444444 4444444444 3344432 22222 3444444444433211100
Q ss_pred c-----------------------ccch-hhhhcCCCCCEEEeeeccCccccchhhc-c--------CCceeEeeccCcc
Q 037941 181 N-----------------------NASL-AELNQLSRLTTLEMLILDAQVMPRELFS-L--------GLERNKIFLGDVW 227 (308)
Q Consensus 181 ~-----------------------~~~~-~~l~~l~~L~~L~l~~~~~~~~p~~~~~-~--------~L~~l~i~~~~~~ 227 (308)
. ...+ ..+..+++|+.|++++|.++.+|...+. . +|+.|++..+.+.
T Consensus 422 l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 501 (636)
T 4eco_A 422 FDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501 (636)
T ss_dssp SCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC
T ss_pred hcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC
Confidence 0 0111 2234466666666666666666665544 1 5666666555432
Q ss_pred c---ccC--CCCcCceEEEeecCchhhhhhHHHHhcccceeecCCc-----cc-hhhhhhccCCCCCCcccEEecccccc
Q 037941 228 S---WTG--KYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKL-----NG-LQNVLHELDGEGFPRLKHLLVQNASE 296 (308)
Q Consensus 228 ~---~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~-----~~-~~~~~~~~~~~~~~~L~~L~l~~c~~ 296 (308)
. ... .+++|+.|+|+.|.....+..+..+ ++|+.|+++++ +. ...++..+ ..+++|+.|++++| +
T Consensus 502 ~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l-~~L~~L~Ls~N~~ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N-~ 577 (636)
T 4eco_A 502 KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNS-STLKGFGIRNQRDAQGNRTLREWPEGI--TLCPSLTQLQIGSN-D 577 (636)
T ss_dssp BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGC-SSCCEEECCSCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSS-C
T ss_pred ccChhhhhccCCCcCEEECCCCCCCCcChhhhcC-CCCCEEECCCCcccccCcccccChHHH--hcCCCCCEEECCCC-c
Confidence 2 222 5566667776666555444444443 66666666431 11 22221111 34566666666666 4
Q ss_pred cccccc
Q 037941 297 ILYIVS 302 (308)
Q Consensus 297 l~~i~~ 302 (308)
+..||.
T Consensus 578 l~~ip~ 583 (636)
T 4eco_A 578 IRKVNE 583 (636)
T ss_dssp CCBCCS
T ss_pred CCccCH
Confidence 455554
No 21
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=4.6e-23 Score=179.51 Aligned_cols=188 Identities=20% Similarity=0.270 Sum_probs=150.6
Q ss_pred ccchhhHhhh-hcCCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCC
Q 037941 24 ISDLREVFED-LMQKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLP 100 (308)
Q Consensus 24 ~~~~~~~~~~-~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp 100 (308)
+..+..+|.. ...+++++|++++|.+..+|..+ .+++|++|++++|.++ .+|..+ .++++|++|++++|.+. .+|
T Consensus 90 ~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L~L~~n~~~~~~p 167 (328)
T 4fcg_A 90 SVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLRELSIRACPELTELP 167 (328)
T ss_dssp SSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCEEEEEEETTCCCCC
T ss_pred CCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCEEECCCCCCccccC
Confidence 4556666643 45889999999999999999877 9999999999999998 778775 78999999999997655 788
Q ss_pred CCCCC---cccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccc
Q 037941 101 STLGD---VATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEV 177 (308)
Q Consensus 101 ~~~~~---~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 177 (308)
..++. ...+..+++|++|++++|.++.+|..++.+++|+.|++++|. ++.+|.. ++.+++|++|++++|.+.+.
T Consensus 168 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~-l~~l~~~-l~~l~~L~~L~Ls~n~~~~~- 244 (328)
T 4fcg_A 168 EPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPA-IHHLPKLEELDLRGCTALRN- 244 (328)
T ss_dssp SCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC-CCCCCGG-GGGCTTCCEEECTTCTTCCB-
T ss_pred hhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC-CCcCchh-hccCCCCCEEECcCCcchhh-
Confidence 87200 011234999999999999999999999999999999999998 7788876 89999999999999987733
Q ss_pred cCCcccchhhhhcCCCCCEEEeeecc-Cccccchhhc-cCCceeEee
Q 037941 178 EGQNNASLAELNQLSRLTTLEMLILD-AQVMPRELFS-LGLERNKIF 222 (308)
Q Consensus 178 ~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~p~~~~~-~~L~~l~i~ 222 (308)
.+..+..+++|+.|++++|. .+.+|..+.. ++|+.|++.
T Consensus 245 ------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 245 ------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp ------CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred ------hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 33578889999999999975 4455555333 445554443
No 22
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=6.6e-23 Score=192.84 Aligned_cols=173 Identities=16% Similarity=0.121 Sum_probs=131.5
Q ss_pred eecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC
Q 037941 21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS 98 (308)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 98 (308)
.+.+.++.++|. ...+.+++|++++|.+..+++ .+ .+++|++|++++|.++...|..+ .++++|++|++++|.+..
T Consensus 18 ~c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 18 NCENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTF-QSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp ECTTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTT-TTCTTCCEEECTTCCCSE
T ss_pred ECCCCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhc-cCccccCeeeCCCCcccc
Confidence 355677888884 457789999999999987754 44 99999999999999886555554 789999999999999986
Q ss_pred CCCCCCCcccccccccccEEeecCCcCccc-chhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccc
Q 037941 99 LPSTLGDVATVGVLKKLVIFSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEV 177 (308)
Q Consensus 99 lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 177 (308)
+++.. ++.+++|++|++++|.++.+ +..++.+++|++|++++|. +..++...+..+++|++|++++|.+.+..
T Consensus 96 ~~~~~-----~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 96 MAETA-----LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp ECTTT-----TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred cChhh-----hcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccC
Confidence 64432 88999999999999999876 5668889999999999988 55553222455889999999998877332
Q ss_pred cCCcccchhhhhcCCCCC--EEEeeeccCcccc
Q 037941 178 EGQNNASLAELNQLSRLT--TLEMLILDAQVMP 208 (308)
Q Consensus 178 ~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~p 208 (308)
+..++.+++|+ .|++++|.+..++
T Consensus 170 -------~~~~~~l~~L~~l~L~l~~n~l~~~~ 195 (606)
T 3t6q_A 170 -------KEDMSSLQQATNLSLNLNGNDIAGIE 195 (606)
T ss_dssp -------HHHHHTTTTCCSEEEECTTCCCCEEC
T ss_pred -------hhhhhhhcccceeEEecCCCccCccC
Confidence 24556666666 5666666544433
No 23
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=3.8e-22 Score=187.63 Aligned_cols=148 Identities=18% Similarity=0.199 Sum_probs=117.6
Q ss_pred eeecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC
Q 037941 20 NIQIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP 97 (308)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 97 (308)
..+.+.++.++|. ...+++++|++++|.+..+++ .+ .+++|++|++++|.+++..+.. |.++++|++|++++|.+.
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~-~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 16 YQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA-WHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp EECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCCCC
T ss_pred eEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHH-hhchhhcCEeECCCCccc
Confidence 3456788888885 456899999999999977766 44 8999999999999888544444 478999999999999999
Q ss_pred CC-CCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCC-ccCcchhcCCCCCceEEccCCccc
Q 037941 98 SL-PSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLK-SIRPNVISNLPRLEELYMGNSFTH 174 (308)
Q Consensus 98 ~l-p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~ 174 (308)
.+ |.. ++.+++|++|++++|.++.++ ..++++++|++|++++|...+ .+|.. ++++++|++|++++|.+.
T Consensus 94 ~~~p~~------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 94 SFSPGS------FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CCCTTS------STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred ccChhh------cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcce
Confidence 77 555 888889999999998888666 568888888888888887332 45665 788888888888888776
Q ss_pred cc
Q 037941 175 WE 176 (308)
Q Consensus 175 ~~ 176 (308)
+.
T Consensus 167 ~~ 168 (606)
T 3vq2_A 167 TI 168 (606)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 24
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=9.8e-23 Score=177.79 Aligned_cols=244 Identities=18% Similarity=0.236 Sum_probs=196.5
Q ss_pred CCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccE
Q 037941 38 DPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI 117 (308)
Q Consensus 38 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~ 117 (308)
.++.++++++.+..+|... .+++++|++++|.++. ++...+.++++|++|++++|.+..+++.. ++.+++|++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISKIHEKA-----FSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECGGG-----STTCTTCCE
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCc-cCHhHhhCCCCCcEEECCCCccCccCHhH-----hhCcCCCCE
Confidence 5889999999999888766 4799999999999884 44434579999999999999999774432 899999999
Q ss_pred EeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEE
Q 037941 118 FSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTL 197 (308)
Q Consensus 118 L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 197 (308)
|++++|.++.+|..+. ++|+.|++++|. ++.++...+..+++|+.|++++|.+.... ..+..+..+ +|+.|
T Consensus 107 L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~l-~L~~L 177 (332)
T 2ft3_A 107 LYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSG-----FEPGAFDGL-KLNYL 177 (332)
T ss_dssp EECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGG-----SCTTSSCSC-CCSCC
T ss_pred EECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCC-----CCcccccCC-ccCEE
Confidence 9999999999998665 899999999998 77888777899999999999999886211 123455666 99999
Q ss_pred EeeeccCccccchhhccCCceeEeeccCccc----ccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhh
Q 037941 198 EMLILDAQVMPRELFSLGLERNKIFLGDVWS----WTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQN 273 (308)
Q Consensus 198 ~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 273 (308)
++++|.++.+|..+. .+|+.|++..+.+.. .+..+++|+.|+|+.|............+++|++|++++ +.++.
T Consensus 178 ~l~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~ 255 (332)
T 2ft3_A 178 RISEAKLTGIPKDLP-ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN-NKLSR 255 (332)
T ss_dssp BCCSSBCSSCCSSSC-SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS-SCCCB
T ss_pred ECcCCCCCccCcccc-CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC-CcCee
Confidence 999999999988765 789999987776433 466788999999999876665443333359999999998 56666
Q ss_pred hhhccCCCCCCcccEEecccccccccccc
Q 037941 274 VLHELDGEGFPRLKHLLVQNASEILYIVS 302 (308)
Q Consensus 274 ~~~~~~~~~~~~L~~L~l~~c~~l~~i~~ 302 (308)
++..+ ..+++|+.|++++| ++..++.
T Consensus 256 lp~~l--~~l~~L~~L~l~~N-~l~~~~~ 281 (332)
T 2ft3_A 256 VPAGL--PDLKLLQVVYLHTN-NITKVGV 281 (332)
T ss_dssp CCTTG--GGCTTCCEEECCSS-CCCBCCT
T ss_pred cChhh--hcCccCCEEECCCC-CCCccCh
Confidence 55433 56899999999998 6777764
No 25
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=3e-22 Score=174.48 Aligned_cols=244 Identities=18% Similarity=0.231 Sum_probs=199.7
Q ss_pred CCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC-CCCCCCccccccccccc
Q 037941 38 DPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGDVATVGVLKKLV 116 (308)
Q Consensus 38 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~~~~l~~l~~L~ 116 (308)
+++.++++++.+..+|... .+++++|++++|.++. ++...+.++++|++|++++|.+..+ |.. ++.+++|+
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------~~~l~~L~ 103 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGA------FAPLVKLE 103 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCCCBCTTT------TTTCTTCC
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCE-eChhhhccCCCCCEEECCCCcCCeeCHHH------hcCCCCCC
Confidence 6888999999998888655 3789999999999884 4544458999999999999999987 555 89999999
Q ss_pred EEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCE
Q 037941 117 IFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTT 196 (308)
Q Consensus 117 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 196 (308)
+|++++|.++.+|..+. ++|+.|++++|. ++.++...+..+++|+.|++++|.+.... ..+..+..+++|+.
T Consensus 104 ~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 104 RLYLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSG-----IENGAFQGMKKLSY 175 (330)
T ss_dssp EEECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGG-----BCTTGGGGCTTCCE
T ss_pred EEECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccC-----cChhhccCCCCcCE
Confidence 99999999999987654 799999999998 77888777899999999999999886211 22467889999999
Q ss_pred EEeeeccCccccchhhccCCceeEeeccCcc----cccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchh
Q 037941 197 LEMLILDAQVMPRELFSLGLERNKIFLGDVW----SWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQ 272 (308)
Q Consensus 197 L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 272 (308)
|++++|.++.+|.... ++|+.|++..+.+. ..+..+++|+.|+|+.|............+++|++|++++ +.++
T Consensus 176 L~l~~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~ 253 (330)
T 1xku_A 176 IRIADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN-NKLV 253 (330)
T ss_dssp EECCSSCCCSCCSSCC-TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS-SCCS
T ss_pred EECCCCccccCCcccc-ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC-CcCc
Confidence 9999999999988766 89999999877643 3467889999999999876655443223359999999998 5666
Q ss_pred hhhhccCCCCCCcccEEecccccccccccc
Q 037941 273 NVLHELDGEGFPRLKHLLVQNASEILYIVS 302 (308)
Q Consensus 273 ~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~ 302 (308)
.++..+ ..+++|++|++++| .++.++.
T Consensus 254 ~lp~~l--~~l~~L~~L~l~~N-~i~~~~~ 280 (330)
T 1xku_A 254 KVPGGL--ADHKYIQVVYLHNN-NISAIGS 280 (330)
T ss_dssp SCCTTT--TTCSSCCEEECCSS-CCCCCCT
T ss_pred cCChhh--ccCCCcCEEECCCC-cCCccCh
Confidence 554433 67899999999998 6877764
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=5e-23 Score=191.40 Aligned_cols=178 Identities=19% Similarity=0.212 Sum_probs=137.5
Q ss_pred cccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCC
Q 037941 23 IISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP 100 (308)
Q Consensus 23 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp 100 (308)
.+.++.++|. ...+++++|++++|.+..+++ .+ .+++|++|++++|.+++..+.. +.++++|++|++++|.+..+|
T Consensus 13 ~~~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 13 RSRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA-FYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp TTSCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSCCCSCC
T ss_pred CCCccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh-ccccccCCEEECCCCccCccC
Confidence 3567778885 446899999999999977644 44 9999999999999988544444 478999999999999999887
Q ss_pred CCCCCcccccccccccEEeecCCcCcc--cchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccccc
Q 037941 101 STLGDVATVGVLKKLVIFSFRNSHIEQ--LPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE 178 (308)
Q Consensus 101 ~~~~~~~~l~~l~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 178 (308)
+.. ++.+++|++|++++|.++. .|..++.+++|+.|++++|..++.+|...+..+++|++|++++|.+.+..+
T Consensus 91 ~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 91 SSW-----FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp HHH-----HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred HHH-----hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 754 8899999999999999884 467789999999999999986777876558899999999999998875433
Q ss_pred CCcc----------------cchh-hhhcCCCCCEEEeeeccCccc
Q 037941 179 GQNN----------------ASLA-ELNQLSRLTTLEMLILDAQVM 207 (308)
Q Consensus 179 ~~~~----------------~~~~-~l~~l~~L~~L~l~~~~~~~~ 207 (308)
.... ..+. .+..+++|+.|++++|.+..+
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 2110 0111 123567788888887776553
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=6.9e-22 Score=180.27 Aligned_cols=257 Identities=14% Similarity=0.153 Sum_probs=141.0
Q ss_pred cchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCC
Q 037941 25 SDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLG 104 (308)
Q Consensus 25 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~ 104 (308)
.++..+|.....+++++|++++|.+..+++...+++|++|++++|.+++. +. +..+++|++|++++|.+..+|+
T Consensus 56 ~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~L~~n~l~~~~~--- 129 (466)
T 1o6v_A 56 LGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI-TP--LANLTNLTGLTLFNNQITDIDP--- 129 (466)
T ss_dssp SCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCCCCGG---
T ss_pred CCCccCcchhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccC-hh--hcCCCCCCEEECCCCCCCCChH---
Confidence 44445554456778888888888887777644888888888888887643 33 4678888888888888877765
Q ss_pred CcccccccccccEEeecCCcCcccch--------------------hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCc
Q 037941 105 DVATVGVLKKLVIFSFRNSHIEQLPE--------------------EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLE 164 (308)
Q Consensus 105 ~~~~l~~l~~L~~L~l~~~~i~~l~~--------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 164 (308)
+..+++|++|++++|.+..++. .+..+++|+.|++++|. ++.++. +..+++|+
T Consensus 130 ----~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~ 202 (466)
T 1o6v_A 130 ----LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK-VSDISV--LAKLTNLE 202 (466)
T ss_dssp ----GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSC-CCCCGG--GGGCTTCS
T ss_pred ----HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCc-CCCChh--hccCCCCC
Confidence 5666677777776666554432 13344555555555554 344332 44555555
Q ss_pred eEEccCCcccccccC-------------CcccchhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccc--
Q 037941 165 ELYMGNSFTHWEVEG-------------QNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSW-- 229 (308)
Q Consensus 165 ~L~l~~~~~~~~~~~-------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~-- 229 (308)
.|++++|.+.+..+- ........+..+++|+.|++++|.+..++.....++|+.|++..+.+...
T Consensus 203 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~ 282 (466)
T 1o6v_A 203 SLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 282 (466)
T ss_dssp EEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG
T ss_pred EEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc
Confidence 555555554422110 00000123344444555555555444444322224555555544432221
Q ss_pred cCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccccccccc
Q 037941 230 TGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIV 301 (308)
Q Consensus 230 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~ 301 (308)
...+++|+.|+++.|....... +.. +++|+.|+++++ .++.+.+ .+.+++|+.|++.+| ++..++
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~-~~~-l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~ 347 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP-ISN-LKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNN-KVSDVS 347 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG-GGG-CTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCCG
T ss_pred ccCCCccCeEEcCCCcccCchh-hcC-CCCCCEEECcCC-cCCCchh---hccCccCCEeECCCC-ccCCch
Confidence 3445556666665554433221 222 366666666663 3333322 245667777777766 455443
No 28
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=3.4e-22 Score=187.94 Aligned_cols=244 Identities=17% Similarity=0.142 Sum_probs=145.1
Q ss_pred cCCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCccccccc
Q 037941 35 MQKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVL 112 (308)
Q Consensus 35 ~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~~l 112 (308)
..+++++|++++|.+..+|..+ .+++|++|++++|.++...+.. +..+++|++|++++|.+. .+|... +..+
T Consensus 276 ~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~-----~~~l 349 (606)
T 3t6q_A 276 CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGTGC-----LENL 349 (606)
T ss_dssp TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCSSCCBCCSST-----TTTC
T ss_pred cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCCcccccchhh-----hhcc
Confidence 4567788888888777777766 7788888888887776443333 357777777777777766 565543 6677
Q ss_pred ccccEEeecCCcCccc---chhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhh
Q 037941 113 KKLVIFSFRNSHIEQL---PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELN 189 (308)
Q Consensus 113 ~~L~~L~l~~~~i~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 189 (308)
++|++|++++|.++.+ +..+..+++|+.|++++|. +...+...+..+++|+.|++++|.+.+..+ ...+.
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~ 422 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDA------QSPFQ 422 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTT------CCTTT
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCccc------chhhh
Confidence 7777777777777644 4557777777777777776 444433336677777777777776652211 12355
Q ss_pred cCCCCCEEEeeeccCccccchh-hc-cCCceeEeeccCcc-------cccCCCCcCceEEEeecCchhhhhhHHHHhccc
Q 037941 190 QLSRLTTLEMLILDAQVMPREL-FS-LGLERNKIFLGDVW-------SWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRT 260 (308)
Q Consensus 190 ~l~~L~~L~l~~~~~~~~p~~~-~~-~~L~~l~i~~~~~~-------~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L 260 (308)
.+++|+.|++++|.+...+... .. ++|+.|++..+.+. .....+++|+.|+++.|...........-+++|
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 502 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMM 502 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCC
Confidence 6666666666666655443332 22 56666666554432 124455666666666655444322221223666
Q ss_pred ceeecCCccchhhhhhccCCCCCCcccEEecccc
Q 037941 261 EDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNA 294 (308)
Q Consensus 261 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 294 (308)
++|++++ +.++...+.. ...++.| .|++++|
T Consensus 503 ~~L~Ls~-N~l~~~~~~~-l~~l~~L-~L~L~~N 533 (606)
T 3t6q_A 503 NHVDLSH-NRLTSSSIEA-LSHLKGI-YLNLASN 533 (606)
T ss_dssp CEEECCS-SCCCGGGGGG-GTTCCSC-EEECCSS
T ss_pred CEEECCC-CccCcCChhH-hCccccc-EEECcCC
Confidence 6666665 3333332211 1344455 5555555
No 29
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=4.5e-22 Score=185.64 Aligned_cols=146 Identities=19% Similarity=0.235 Sum_probs=102.3
Q ss_pred eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC
Q 037941 21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS 98 (308)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 98 (308)
.|.+.++.++|. ...+++++|++++|.+..+++. + .+++|++|++++|.+++ ++...|.++++|++|++++|.+..
T Consensus 13 ~c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 13 QCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp ECCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EeCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCc
Confidence 445677777884 4467888888888888776543 3 88888888888888774 444445778888888888888887
Q ss_pred CCCCCCCcccccccccccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCc--cCcchhcCCCCCceEEccCCcccc
Q 037941 99 LPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKS--IRPNVISNLPRLEELYMGNSFTHW 175 (308)
Q Consensus 99 lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~ 175 (308)
+|+.. ++.+++|++|++++|.++.++. .++.+++|++|++++|. +.. +|.. ++++++|++|++++|.+.+
T Consensus 91 ~~~~~-----~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~-~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 91 LALGA-----FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp ECTTT-----TTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECTTSCCCE
T ss_pred cCHhh-----hcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhh-hcccCCCCEEeCcCCccce
Confidence 66433 6777777777777777776654 46677777777777776 333 4554 6667777777777665543
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=2.8e-22 Score=193.94 Aligned_cols=254 Identities=14% Similarity=0.130 Sum_probs=127.9
Q ss_pred cCCCCeeEEeecCC-CC--CCCCcC--------CCCCccEEEecCCCCcCCCCc-hhhcCCCCccEEEccCCCCCCCCCC
Q 037941 35 MQKDPIAISHPCRD-IQ--ELPEKL--------ECPKLKLFFLFSEKLSLVIPD-LFFEGVPSLQVLSLNGFHFPSLPST 102 (308)
Q Consensus 35 ~~~~l~~L~l~~~~-~~--~~~~~~--------~~~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~lp~~ 102 (308)
..++|++|++++|. +. .+|..+ .+++|+.|++++|.++ .+|. ..+.++++|++|++++|.+..+| .
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~ 590 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE-A 590 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC-C
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch-h
Confidence 35555666666554 43 233322 2335566666555555 4554 12245555666666555555555 3
Q ss_pred CCCcccccccccccEEeecCCcCcccchhhhCcCC-CCEEecCCCCCCCccCcchhcCCCC--CceEEccCCcccccccC
Q 037941 103 LGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTR-LKLLDLSTCSKLKSIRPNVISNLPR--LEELYMGNSFTHWEVEG 179 (308)
Q Consensus 103 ~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~~l~~--L~~L~l~~~~~~~~~~~ 179 (308)
++.+++|++|++++|.++.+|..+..+++ |+.|++++|. ++.+|.. +..+.. |+.|++++|.+.+..+.
T Consensus 591 ------~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~-~~~~~~~~L~~L~Ls~N~l~g~ip~ 662 (876)
T 4ecn_A 591 ------FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNI-FNAKSVYVMGSVDFSYNKIGSEGRN 662 (876)
T ss_dssp ------CCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCSCCSC-CCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred ------hcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CCcCchh-hhccccCCCCEEECcCCcCCCcccc
Confidence 55555555555555555555555555555 5555555555 4445533 333322 55555555544422110
Q ss_pred ---------------------Ccccchhh-hhcCCCCCEEEeeeccCccccchhhc-c--------CCceeEeeccCcc-
Q 037941 180 ---------------------QNNASLAE-LNQLSRLTTLEMLILDAQVMPRELFS-L--------GLERNKIFLGDVW- 227 (308)
Q Consensus 180 ---------------------~~~~~~~~-l~~l~~L~~L~l~~~~~~~~p~~~~~-~--------~L~~l~i~~~~~~- 227 (308)
.....+.. +..+++|+.|++++|.++.+|...+. . +|+.|++..+.+.
T Consensus 663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~ 742 (876)
T 4ecn_A 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742 (876)
T ss_dssp CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC
T ss_pred chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc
Confidence 00012222 23566666666666666666665543 1 5666666554432
Q ss_pred --cccC--CCCcCceEEEeecCchhhhhhHHHHhcccceeecCCcc-----c-hhhhhhccCCCCCCcccEEeccccccc
Q 037941 228 --SWTG--KYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLN-----G-LQNVLHELDGEGFPRLKHLLVQNASEI 297 (308)
Q Consensus 228 --~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~-----~-~~~~~~~~~~~~~~~L~~L~l~~c~~l 297 (308)
.... .+++|+.|+|+.|.....+..+..+ ++|+.|++++++ . ...++..+ ..+++|+.|++++| ++
T Consensus 743 lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L-~~L~~L~Ls~N~~ls~N~l~~~ip~~l--~~L~~L~~L~Ls~N-~L 818 (876)
T 4ecn_A 743 LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNS-SQLKAFGIRHQRDAEGNRILRQWPTGI--TTCPSLIQLQIGSN-DI 818 (876)
T ss_dssp CCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGC-TTCCEEECCCCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSS-CC
T ss_pred chHHhhhccCCCcCEEEeCCCCCCccchhhhcC-CCCCEEECCCCCCcccccccccChHHH--hcCCCCCEEECCCC-CC
Confidence 2232 5566666776666554444444433 666666665421 1 12211111 34566666666666 44
Q ss_pred ccccc
Q 037941 298 LYIVS 302 (308)
Q Consensus 298 ~~i~~ 302 (308)
..||.
T Consensus 819 ~~Ip~ 823 (876)
T 4ecn_A 819 RKVDE 823 (876)
T ss_dssp CBCCS
T ss_pred CccCH
Confidence 55554
No 31
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=1e-22 Score=175.64 Aligned_cols=232 Identities=19% Similarity=0.161 Sum_probs=161.5
Q ss_pred eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCC--CCchhhcCCCCccEEEccCCCC
Q 037941 21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLV--IPDLFFEGVPSLQVLSLNGFHF 96 (308)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~ 96 (308)
.+.+.++..+|. ...+++++|++++|.+..+|... .+++|++|++++|.++.. .+..+ ..+++|++|++++|.+
T Consensus 13 ~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i 90 (306)
T 2z66_A 13 RCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGV 90 (306)
T ss_dssp ECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSE
T ss_pred EcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCcc
Confidence 344667777774 44678999999999998888754 889999999999887632 24444 4789999999999998
Q ss_pred CCCCCCCCCcccccccccccEEeecCCcCcccch--hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccc
Q 037941 97 PSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE--EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTH 174 (308)
Q Consensus 97 ~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 174 (308)
..+|.. +..+++|++|++++|.++.++. .+..+++|+.|++++|. +...+...+..+++|++|++++|.+.
T Consensus 91 ~~l~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~ 163 (306)
T 2z66_A 91 ITMSSN------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQ 163 (306)
T ss_dssp EEEEEE------EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTTTTTTCTTCCEEECTTCEEG
T ss_pred ccChhh------cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchhhcccCcCCCEEECCCCccc
Confidence 888887 7889999999999998887764 68888999999999988 55444444788899999999998877
Q ss_pred ccccCCcccchhhhhcCCCCCEEEeeeccCccccc-hhhc-cCCceeEeeccCccc----ccCCCCcCceEEEeecCchh
Q 037941 175 WEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPR-ELFS-LGLERNKIFLGDVWS----WTGKYETSRTLKLKLDNRMY 248 (308)
Q Consensus 175 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~-~~~~-~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~~~~ 248 (308)
+. ..+..+..+++|+.|++++|.++.++. .+.. ++|+.|++..+.+.. ....+++|+.|+|+.|....
T Consensus 164 ~~------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 164 EN------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp GG------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred cc------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 31 123567788899999999988776643 3222 566666665554322 23344555555555554333
Q ss_pred hhh-hHHHHhcccceeecCC
Q 037941 249 LEH-GIKMLLRRTEDLHLDK 267 (308)
Q Consensus 249 ~~~-~~~~~~~~L~~L~l~~ 267 (308)
... .+..+.++|++|++++
T Consensus 238 ~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 238 SKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp CSSSSCCCCCTTCCEEECTT
T ss_pred cCHHHHHhhhccCCEEEccC
Confidence 211 1222213555555555
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.88 E-value=7.4e-22 Score=192.36 Aligned_cols=149 Identities=17% Similarity=0.172 Sum_probs=121.6
Q ss_pred eeecccchhhHhhhhcCCCCeeEEeecCCCCCCC-CcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC
Q 037941 20 NIQIISDLREVFEDLMQKDPIAISHPCRDIQELP-EKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP 97 (308)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 97 (308)
..+.+.++..+|. .++++++|++++|.+..++ ..+ .+++|++|++++|...+.++...|+++++|++|++++|.+.
T Consensus 9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~ 86 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY 86 (844)
T ss_dssp EEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred EEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence 3556788899996 6899999999999997764 444 99999999999997776776655689999999999999999
Q ss_pred CC-CCCCCCcccccccccccEEeecCCcCcc-cchh--hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcc
Q 037941 98 SL-PSTLGDVATVGVLKKLVIFSFRNSHIEQ-LPEE--IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFT 173 (308)
Q Consensus 98 ~l-p~~~~~~~~l~~l~~L~~L~l~~~~i~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 173 (308)
.+ |.. ++.+++|++|++++|.++. +|.. ++.+++|+.|++++|...+..+...++++++|++|++++|.+
T Consensus 87 ~~~p~~------~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 87 FLHPDA------FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp EECTTS------SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred ccCHhH------ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 76 555 8899999999999999883 5554 888999999999999843333333488999999999999887
Q ss_pred ccc
Q 037941 174 HWE 176 (308)
Q Consensus 174 ~~~ 176 (308)
.+.
T Consensus 161 ~~~ 163 (844)
T 3j0a_A 161 FLV 163 (844)
T ss_dssp CCC
T ss_pred Cee
Confidence 643
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=6.4e-22 Score=188.55 Aligned_cols=173 Identities=20% Similarity=0.219 Sum_probs=136.1
Q ss_pred eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC
Q 037941 21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS 98 (308)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 98 (308)
-+.+.++.++|. ...+++++|++++|.+..+++. + .+++|++|++++|.+++..+.. +.++++|++|++++|.+..
T Consensus 10 ~cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~ 87 (680)
T 1ziw_A 10 DCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPEL-CQKLPMLKVLNLQHNELSQ 87 (680)
T ss_dssp ECCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTH-HHHCTTCCEEECCSSCCCC
T ss_pred ECCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHH-HhcccCcCEEECCCCccCc
Confidence 455677888884 3468999999999999888764 4 8999999999999988655554 4789999999999999999
Q ss_pred CCCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccc
Q 037941 99 LPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEV 177 (308)
Q Consensus 99 lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 177 (308)
+|+.. ++.+++|++|++++|.++.++ ..++++++|++|++++|. +...+...++.+++|++|++++|.+.+..
T Consensus 88 l~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 161 (680)
T 1ziw_A 88 LSDKT-----FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALK 161 (680)
T ss_dssp CCTTT-----TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBC
T ss_pred cChhh-----hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccC
Confidence 98854 889999999999999999776 568999999999999998 55554444788999999999999877432
Q ss_pred cCCcccchhhh--hcCCCCCEEEeeeccCcccc
Q 037941 178 EGQNNASLAEL--NQLSRLTTLEMLILDAQVMP 208 (308)
Q Consensus 178 ~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~p 208 (308)
+ ..+ ..+++|+.|++++|.++.++
T Consensus 162 ~-------~~~~~~~~~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 162 S-------EELDIFANSSLKKLELSSNQIKEFS 187 (680)
T ss_dssp H-------HHHGGGTTCEESEEECTTCCCCCBC
T ss_pred H-------HHhhccccccccEEECCCCcccccC
Confidence 2 222 23456666666666554443
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=2.4e-22 Score=173.87 Aligned_cols=226 Identities=16% Similarity=0.201 Sum_probs=184.6
Q ss_pred CCccEEEecCCCCcC--CCCchhhcCCCCccEEEccC-CCCC-CCCCCCCCcccccccccccEEeecCCcCc-ccchhhh
Q 037941 59 PKLKLFFLFSEKLSL--VIPDLFFEGVPSLQVLSLNG-FHFP-SLPSTLGDVATVGVLKKLVIFSFRNSHIE-QLPEEIG 133 (308)
Q Consensus 59 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~-~~~~-~lp~~~~~~~~l~~l~~L~~L~l~~~~i~-~l~~~~~ 133 (308)
.+++.|++++|.+++ .+|..+ .++++|++|++++ |.+. .+|.. ++.+++|++|++++|.++ .+|..+.
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~------l~~l~~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPA------IAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGG------GGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChh------HhcCCCCCEEECcCCeeCCcCCHHHh
Confidence 689999999999987 788766 6899999999994 8887 67887 899999999999999998 8899999
Q ss_pred CcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCC-CCCEEEeeeccCc-cccchh
Q 037941 134 QLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS-RLTTLEMLILDAQ-VMPREL 211 (308)
Q Consensus 134 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~-~~p~~~ 211 (308)
.+++|++|++++|.....+|.. +..+++|++|++++|.+.+. .+..+..++ .|+.|++++|.+. .+|..+
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~-------~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~ 194 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNRISGA-------IPDSYGSFSKLFTSMTISRNRLTGKIPPTF 194 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSCCEEE-------CCGGGGCCCTTCCEEECCSSEEEEECCGGG
T ss_pred CCCCCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCCcccCc-------CCHHHhhhhhcCcEEECcCCeeeccCChHH
Confidence 9999999999999844477776 89999999999999998733 336778887 9999999999976 677777
Q ss_pred hccCCceeEeeccCc----ccccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchh-hhhhccCCCCCCcc
Q 037941 212 FSLGLERNKIFLGDV----WSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQ-NVLHELDGEGFPRL 286 (308)
Q Consensus 212 ~~~~L~~l~i~~~~~----~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~~~L 286 (308)
....|+.|++..+.+ +..+..+++|+.|+|+.|........+.. +++|++|+++++ .++ .++..+ ..+++|
T Consensus 195 ~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-l~~L~~L~Ls~N-~l~~~~p~~l--~~l~~L 270 (313)
T 1ogq_A 195 ANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL-SKNLNGLDLRNN-RIYGTLPQGL--TQLKFL 270 (313)
T ss_dssp GGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCC-CTTCCEEECCSS-CCEECCCGGG--GGCTTC
T ss_pred hCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccc-cCCCCEEECcCC-cccCcCChHH--hcCcCC
Confidence 776699999876653 44577899999999999876544444333 499999999984 444 333323 568999
Q ss_pred cEEeccccccccccccC
Q 037941 287 KHLLVQNASEILYIVSS 303 (308)
Q Consensus 287 ~~L~l~~c~~l~~i~~~ 303 (308)
+.|++++|.--..+|..
T Consensus 271 ~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 271 HSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp CEEECCSSEEEEECCCS
T ss_pred CEEECcCCcccccCCCC
Confidence 99999999544477764
No 35
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=1.9e-22 Score=194.71 Aligned_cols=249 Identities=20% Similarity=0.165 Sum_probs=158.4
Q ss_pred CCCeeEEeecCCCC-CCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCcccccccc
Q 037941 37 KDPIAISHPCRDIQ-ELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVLK 113 (308)
Q Consensus 37 ~~l~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~~l~ 113 (308)
+++++|++++|.+. .+|..+ .+++|++|++++|.+++.+|...+.++++|++|++++|.+. .+|.. +..++
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~------l~~l~ 367 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES------LTNLS 367 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT------HHHHT
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH------HHhhh
Confidence 44555555555442 333333 55555555555555554455443455555555555555555 45555 55554
Q ss_pred -cccEEeecCCcCc-ccchhhhC--cCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhh
Q 037941 114 -KLVIFSFRNSHIE-QLPEEIGQ--LTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELN 189 (308)
Q Consensus 114 -~L~~L~l~~~~i~-~l~~~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 189 (308)
+|++|++++|.++ .+|..+.. +++|+.|++++|.....+|.. +..+++|+.|++++|.+.+. .+..+.
T Consensus 368 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~~-------~p~~l~ 439 (768)
T 3rgz_A 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-LSNCSELVSLHLSFNYLSGT-------IPSSLG 439 (768)
T ss_dssp TTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG-GGGCTTCCEEECCSSEEESC-------CCGGGG
T ss_pred cCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHH-HhcCCCCCEEECcCCcccCc-------ccHHHh
Confidence 5666666666555 44544444 566777777777633355555 67778888888888877632 235677
Q ss_pred cCCCCCEEEeeeccCc-cccchhhc-cCCceeEeeccCc----ccccCCCCcCceEEEeecCchhh-hhhHHHHhcccce
Q 037941 190 QLSRLTTLEMLILDAQ-VMPRELFS-LGLERNKIFLGDV----WSWTGKYETSRTLKLKLDNRMYL-EHGIKMLLRRTED 262 (308)
Q Consensus 190 ~l~~L~~L~l~~~~~~-~~p~~~~~-~~L~~l~i~~~~~----~~~~~~~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~ 262 (308)
.+++|+.|++++|.+. .+|..+.. ++|+.|++..+.+ +.+...+++|+.|+|+.|..... +..+.. +++|++
T Consensus 440 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~ 518 (768)
T 3rgz_A 440 SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAI 518 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCE
T ss_pred cCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc-CCCCCE
Confidence 8888888888888866 56766655 8888888876653 44567788999999988876633 344444 489999
Q ss_pred eecCCccchhhhhhccCCCCCCcccEEecccccccccccc
Q 037941 263 LHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVS 302 (308)
Q Consensus 263 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~ 302 (308)
|+++++.....++..+ ..+++|+.|++++|+-...+|.
T Consensus 519 L~L~~N~l~~~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 519 LKLSNNSFSGNIPAEL--GDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp EECCSSCCEEECCGGG--GGCTTCCEEECCSSEEESBCCG
T ss_pred EECCCCcccCcCCHHH--cCCCCCCEEECCCCccCCcCCh
Confidence 9999855444444333 5688999999999865556663
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.88 E-value=1.2e-21 Score=174.66 Aligned_cols=254 Identities=17% Similarity=0.209 Sum_probs=173.0
Q ss_pred cCCCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941 35 MQKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL 112 (308)
Q Consensus 35 ~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l 112 (308)
..++++++++.++.+..+|+.. .+++|++|++++|.++. ++...+..+++|++|++++|.+..+|+.. ++.+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l 116 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHV-----FQNV 116 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTC
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccc-cChhhccCCCCcCEEECCCCCCCcCCHHH-----hcCC
Confidence 3689999999999999999865 89999999999999874 44444579999999999999999887664 8999
Q ss_pred ccccEEeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCccc--------
Q 037941 113 KKLVIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNA-------- 183 (308)
Q Consensus 113 ~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------- 183 (308)
++|++|++++|.++.+|.. +..+++|+.|++++|. ++.++...+..+++|+.|++++|.+.....+....
T Consensus 117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSY 195 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCS
T ss_pred CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccc
Confidence 9999999999999999876 5899999999999998 66776666899999999999999988432210000
Q ss_pred -chhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcc--cccCCCCcCceEEEeecCchhhh-hhHHHHhcc
Q 037941 184 -SLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVW--SWTGKYETSRTLKLKLDNRMYLE-HGIKMLLRR 259 (308)
Q Consensus 184 -~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~-~~~~~~~~~ 259 (308)
.+..+...+.|+.|++++|.+..+|... ..+|+.|++..+.+. .+...+++|+.|+|+.|...... ..+.. +++
T Consensus 196 n~l~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~ 273 (390)
T 3o6n_A 196 NLLSTLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQR 273 (390)
T ss_dssp SCCSEEECCSSCSEEECCSSCCCEEECCC-CSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT-CSS
T ss_pred ccccccCCCCcceEEECCCCeeeeccccc-cccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccc-ccc
Confidence 0001122234555555555544444332 245666665544432 23455666666666666544332 22222 366
Q ss_pred cceeecCCccchhhhhhccCCCCCCcccEEeccccccccccc
Q 037941 260 TEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIV 301 (308)
Q Consensus 260 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~ 301 (308)
|++|++++ +.++.++.. ...+++|+.|++++| ++..+|
T Consensus 274 L~~L~L~~-n~l~~~~~~--~~~l~~L~~L~L~~n-~l~~~~ 311 (390)
T 3o6n_A 274 LERLYISN-NRLVALNLY--GQPIPTLKVLDLSHN-HLLHVE 311 (390)
T ss_dssp CCEEECCS-SCCCEEECS--SSCCTTCCEEECCSS-CCCCCG
T ss_pred CCEEECCC-CcCcccCcc--cCCCCCCCEEECCCC-cceecC
Confidence 66666666 344443221 244566666666666 454444
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=1.5e-22 Score=174.57 Aligned_cols=238 Identities=18% Similarity=0.154 Sum_probs=186.5
Q ss_pred eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC---CCCCCCccccccccccc
Q 037941 40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL---PSTLGDVATVGVLKKLV 116 (308)
Q Consensus 40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l---p~~~~~~~~l~~l~~L~ 116 (308)
+.++.+++.+..+|... .+++++|++++|.++ .++..++.++++|++|++++|.+..+ |.. +..+++|+
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~------~~~~~~L~ 81 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS------DFGTTSLK 81 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH------HHSCSCCC
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccc------cccccccC
Confidence 36788888888888755 368999999999987 67777678999999999999998854 454 66789999
Q ss_pred EEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCC
Q 037941 117 IFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLT 195 (308)
Q Consensus 117 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~ 195 (308)
+|++++|.++.+|..+..+++|+.|++++|. ++.++. ..+..+++|++|++++|.+.+.. +..+..+++|+
T Consensus 82 ~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------~~~~~~l~~L~ 153 (306)
T 2z66_A 82 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAF-------NGIFNGLSSLE 153 (306)
T ss_dssp EEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECS-------TTTTTTCTTCC
T ss_pred EEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccc-------hhhcccCcCCC
Confidence 9999999999999889999999999999998 666654 44888999999999999887332 24677889999
Q ss_pred EEEeeeccCcc--ccchhhc-cCCceeEeeccCcc----cccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCc
Q 037941 196 TLEMLILDAQV--MPRELFS-LGLERNKIFLGDVW----SWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKL 268 (308)
Q Consensus 196 ~L~l~~~~~~~--~p~~~~~-~~L~~l~i~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~ 268 (308)
+|++++|.+.. +|..+.. ++|+.|++..+.+. ..+..+++|+.|+|+.|............+++|++|++++
T Consensus 154 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~- 232 (306)
T 2z66_A 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL- 232 (306)
T ss_dssp EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT-
T ss_pred EEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCC-
Confidence 99999998765 6666555 89999998877643 3466788999999999876654433333358999999998
Q ss_pred cchhhhhhccCCCCCC-cccEEeccccc
Q 037941 269 NGLQNVLHELDGEGFP-RLKHLLVQNAS 295 (308)
Q Consensus 269 ~~~~~~~~~~~~~~~~-~L~~L~l~~c~ 295 (308)
+.++...+.. ...++ +|+.|++++|+
T Consensus 233 N~l~~~~~~~-~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 233 NHIMTSKKQE-LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SCCCBCSSSS-CCCCCTTCCEEECTTCC
T ss_pred CCCcccCHHH-HHhhhccCCEEEccCCC
Confidence 4555443322 24564 89999999874
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=6.6e-21 Score=173.74 Aligned_cols=223 Identities=18% Similarity=0.216 Sum_probs=114.9
Q ss_pred chhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCC-
Q 037941 26 DLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLG- 104 (308)
Q Consensus 26 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~- 104 (308)
.+..++.....+++++|++++|.+..+++...+++|++|++++|.++. ++. +.++++|++|++++|.+..+|. ++
T Consensus 79 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~ 154 (466)
T 1o6v_A 79 QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD-IDP--LKNLTNLNRLELSSNTISDISA-LSG 154 (466)
T ss_dssp CCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG--GTTCTTCSEEEEEEEEECCCGG-GTT
T ss_pred ccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCC-ChH--HcCCCCCCEEECCCCccCCChh-hcc
Confidence 334444344456667777776666665553366666666666666553 222 3455566666665555443322 00
Q ss_pred --------------Cccc----------------------ccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCC
Q 037941 105 --------------DVAT----------------------VGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSK 148 (308)
Q Consensus 105 --------------~~~~----------------------l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~ 148 (308)
.+.. +..+++|++|++++|.++.++. ++.+++|+.|++++|.
T Consensus 155 l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~- 232 (466)
T 1o6v_A 155 LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQ- 232 (466)
T ss_dssp CTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-
T ss_pred CCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCC-
Confidence 0011 4444555555555555444333 4445555555555554
Q ss_pred CCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCccc
Q 037941 149 LKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWS 228 (308)
Q Consensus 149 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~ 228 (308)
++.++. +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+..++.....++|+.|++..+.+..
T Consensus 233 l~~~~~--l~~l~~L~~L~l~~n~l~~~---------~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~ 301 (466)
T 1o6v_A 233 LKDIGT--LASLTNLTDLDLANNQISNL---------APLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 301 (466)
T ss_dssp CCCCGG--GGGCTTCSEEECCSSCCCCC---------GGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSC
T ss_pred cccchh--hhcCCCCCEEECCCCccccc---------hhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccC
Confidence 344432 45566666666666655521 1255666677777777666666553223666666665554332
Q ss_pred c--cCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCC
Q 037941 229 W--TGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDK 267 (308)
Q Consensus 229 ~--~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 267 (308)
. .+.+++|+.|+|+.|....... +.. +++|++|++++
T Consensus 302 ~~~~~~l~~L~~L~L~~n~l~~~~~-~~~-l~~L~~L~l~~ 340 (466)
T 1o6v_A 302 ISPISNLKNLTYLTLYFNNISDISP-VSS-LTKLQRLFFYN 340 (466)
T ss_dssp CGGGGGCTTCSEEECCSSCCSCCGG-GGG-CTTCCEEECCS
T ss_pred chhhcCCCCCCEEECcCCcCCCchh-hcc-CccCCEeECCC
Confidence 2 3445566666665554333221 222 25555555554
No 39
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.87 E-value=8.4e-21 Score=161.92 Aligned_cols=215 Identities=21% Similarity=0.276 Sum_probs=172.8
Q ss_pred CeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC-CCCCCCcccccccccccE
Q 037941 39 PIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGDVATVGVLKKLVI 117 (308)
Q Consensus 39 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~~~~l~~l~~L~~ 117 (308)
-+.++.+++.+..+|... .+++++|++++|.++. ++...+..+++|++|++++|.+..+ |.. +..+++|++
T Consensus 13 ~~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~------~~~l~~L~~ 84 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAA------FTGLALLEQ 84 (285)
T ss_dssp SCEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTT------TTTCTTCCE
T ss_pred CeEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHhh------cCCccCCCE
Confidence 367888888888888644 5799999999999884 4544458999999999999999977 445 899999999
Q ss_pred EeecCCc-Cccc-chhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCC
Q 037941 118 FSFRNSH-IEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLT 195 (308)
Q Consensus 118 L~l~~~~-i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~ 195 (308)
|++++|. ++.+ |..+..+++|+.|++++|. ++.++...+..+++|++|++++|.+....+ ..+..+++|+
T Consensus 85 L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~~L~ 156 (285)
T 1ozn_A 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPD-------DTFRDLGNLT 156 (285)
T ss_dssp EECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTTCC
T ss_pred EeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCH-------hHhccCCCcc
Confidence 9999997 8877 6779999999999999998 666655558899999999999999883322 4578899999
Q ss_pred EEEeeeccCccccchhhc--cCCceeEeeccCcc----cccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCcc
Q 037941 196 TLEMLILDAQVMPRELFS--LGLERNKIFLGDVW----SWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLN 269 (308)
Q Consensus 196 ~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 269 (308)
.|++++|.++.+|..... ++|+.|++..+.+. .++..+++|+.|+++.|...........-+++|++|++++.+
T Consensus 157 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 999999999988875433 88999888776643 346677889999998887665544433335889999988744
No 40
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.87 E-value=1.6e-20 Score=175.86 Aligned_cols=232 Identities=18% Similarity=0.108 Sum_probs=134.1
Q ss_pred ecccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCC
Q 037941 22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS 101 (308)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~ 101 (308)
..+.++..+|.. ..++++.|++++|.+..+|. .+++|++|++++|.++ .+|. .+++|++|++++|.+..+|.
T Consensus 47 ls~n~L~~lp~~-l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~ 118 (622)
T 3g06_A 47 VGESGLTTLPDC-LPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA 118 (622)
T ss_dssp CCSSCCSCCCSC-CCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC
T ss_pred ecCCCcCccChh-hCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC
Confidence 345666666643 34678888888887777776 5677888888887766 4444 56777777777777777666
Q ss_pred CCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhc-----------------CCCCCc
Q 037941 102 TLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVIS-----------------NLPRLE 164 (308)
Q Consensus 102 ~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-----------------~l~~L~ 164 (308)
. +++|++|++++|.++.+|.. +++|++|++++|. ++.+|.. +. .+++|+
T Consensus 119 ~---------l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~~~-~~~L~~L~L~~N~l~~l~~~~~~L~ 184 (622)
T 3g06_A 119 L---------PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPAL-PSELCKLWAYNNQLTSLPMLPSGLQ 184 (622)
T ss_dssp C---------CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCCCC-CTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred C---------CCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcCCc-cCCCCEEECCCCCCCCCcccCCCCc
Confidence 3 34555666666665555542 2556666666555 4444431 11 124444
Q ss_pred eEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccccCCCCcCceEEEeec
Q 037941 165 ELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLD 244 (308)
Q Consensus 165 ~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~ 244 (308)
.|++++|.+.+.+. .+++|+.|++++|.++.+|.. .++|+.|++..+.+......+++|+.|+|+.|
T Consensus 185 ~L~Ls~N~l~~l~~-----------~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 185 ELSVSDNQLASLPT-----------LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLPSELKELMVSGN 251 (622)
T ss_dssp EEECCSSCCSCCCC-----------CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred EEECCCCCCCCCCC-----------ccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCCCCCCcCcEEECCCC
Confidence 44444444441110 124455555555555555532 25566666665555554455666777777666
Q ss_pred CchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccc
Q 037941 245 NRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNAS 295 (308)
Q Consensus 245 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 295 (308)
.....+. .+++|+.|++++ +.++.++..+ ..+++|+.|++++|+
T Consensus 252 ~L~~lp~----~~~~L~~L~Ls~-N~L~~lp~~l--~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 252 RLTSLPM----LPSGLLSLSVYR-NQLTRLPESL--IHLSSETTVNLEGNP 295 (622)
T ss_dssp CCSCCCC----CCTTCCEEECCS-SCCCSCCGGG--GGSCTTCEEECCSCC
T ss_pred CCCcCCc----ccccCcEEeCCC-CCCCcCCHHH--hhccccCEEEecCCC
Confidence 5443332 336677777776 4455544322 456777777777764
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.87 E-value=5.8e-22 Score=186.37 Aligned_cols=240 Identities=15% Similarity=0.096 Sum_probs=119.4
Q ss_pred hcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCC-------------------
Q 037941 34 LMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGF------------------- 94 (308)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~------------------- 94 (308)
...++++.|++.++.+..+|....+++|++|++++|.+ +.+|. + .+++|++|++++|
T Consensus 282 ~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 357 (606)
T 3vq2_A 282 HCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMNKGSISFKKVALPSLSYLDL 357 (606)
T ss_dssp GGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESCSSCEECCCCCCTTCCEEEC
T ss_pred ccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-ccccc-C--CCCccceeeccCCcCccchhhccCCCCCEEEC
Confidence 34566666666666666666322666666666666665 34552 2 4555555555555
Q ss_pred ---CCCCC---CCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEc
Q 037941 95 ---HFPSL---PSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYM 168 (308)
Q Consensus 95 ---~~~~l---p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 168 (308)
.+..+ |.. +..+++|++|++++|.++.+|..+..+++|+.|++++|......|...+..+++|+.|++
T Consensus 358 s~n~l~~~~~~~~~------~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 431 (606)
T 3vq2_A 358 SRNALSFSGCCSYS------DLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDI 431 (606)
T ss_dssp CSSCEEEEEECCHH------HHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEEC
T ss_pred cCCccCCCcchhhh------hccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEEC
Confidence 33322 222 344444444554444444444444444555555555544222222122444555555555
Q ss_pred cCCcccccccCCcccchhhhhcCCCCCEEEeeeccCcc--ccchhhc-cCCceeEeeccCcc----cccCCCCcCceEEE
Q 037941 169 GNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQV--MPRELFS-LGLERNKIFLGDVW----SWTGKYETSRTLKL 241 (308)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~p~~~~~-~~L~~l~i~~~~~~----~~~~~~~~L~~L~L 241 (308)
++|.+.+. .+..+..+++|++|++++|.+.. +|..+.. ++|+.|++..+.+. .++..+++|+.|+|
T Consensus 432 ~~n~l~~~-------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 432 SYTNTKID-------FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp TTSCCEEC-------CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCCcc-------chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 55544421 12345555666666666665443 3433333 56666666554432 23445566666666
Q ss_pred eecCchhhh-hhHHHHhcccceeecCCccchhhhhhccCCCCCC-cccEEecccc
Q 037941 242 KLDNRMYLE-HGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFP-RLKHLLVQNA 294 (308)
Q Consensus 242 ~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~c 294 (308)
+.|...... ..+.. +++|++|++++ +.++.++..+ ..++ +|+.|++.+|
T Consensus 505 s~N~l~~~~~~~~~~-l~~L~~L~l~~-N~l~~~p~~~--~~l~~~L~~l~l~~N 555 (606)
T 3vq2_A 505 SHNNLLFLDSSHYNQ-LYSLSTLDCSF-NRIETSKGIL--QHFPKSLAFFNLTNN 555 (606)
T ss_dssp CSSCCSCEEGGGTTT-CTTCCEEECTT-SCCCCEESCG--GGSCTTCCEEECCSC
T ss_pred CCCcCCCcCHHHccC-CCcCCEEECCC-CcCcccCHhH--hhhcccCcEEEccCC
Confidence 666544432 22222 36666666666 3344443321 3344 3666666655
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.87 E-value=2.9e-21 Score=182.07 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=120.9
Q ss_pred ecccchhhHhhhhcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941 22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL 99 (308)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 99 (308)
|.+.++.++|+ ..++++++|++++|.++.+++. + .+++|++|++++|.++ .+++..|.++++|++|+|++|+++.+
T Consensus 38 c~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 38 CMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp CTTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCC
Confidence 55678888884 4577999999999999988764 4 8999999999999987 55665568999999999999999998
Q ss_pred CCCCCCcccccccccccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCc--cCcchhcCCCCCceEEccCCcccc
Q 037941 100 PSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKS--IRPNVISNLPRLEELYMGNSFTHW 175 (308)
Q Consensus 100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~ 175 (308)
|+.. |..+++|++|++++|.++.+|. .++.+++|+.|++++|. +.. .|.. ++.+++|++|++++|.+.+
T Consensus 116 ~~~~-----f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 116 ALGA-----FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CGGG-----GTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred CHHH-----hcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcccCccccc
Confidence 8764 8899999999999999998875 48899999999999988 544 3443 7888999999998887654
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=7.5e-21 Score=172.74 Aligned_cols=118 Identities=17% Similarity=0.204 Sum_probs=68.3
Q ss_pred CCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941 36 QKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL 115 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L 115 (308)
.+++++|++++|.+..+|....+++|++|++++|.+++ ++ ++.+++|++|++++|.+..+| ++.+++|
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~--------~~~l~~L 108 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD--------VTPLTKL 108 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--------CTTCTTC
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee--------cCCCCcC
Confidence 56677777777766666533366777777777766653 22 356666677777666666552 3455566
Q ss_pred cEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCC
Q 037941 116 VIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNS 171 (308)
Q Consensus 116 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 171 (308)
++|++++|.++.+| ++.+++|+.|++++|. ++.++ ++.+++|++|++++|
T Consensus 109 ~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~---l~~l~~L~~L~l~~n 158 (457)
T 3bz5_A 109 TYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID---VSHNTQLTELDCHLN 158 (457)
T ss_dssp CEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC---CTTCTTCCEEECTTC
T ss_pred CEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec---cccCCcCCEEECCCC
Confidence 66666666555544 5555555555555555 33332 344445555555444
No 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.86 E-value=3.8e-21 Score=178.71 Aligned_cols=257 Identities=14% Similarity=0.138 Sum_probs=170.2
Q ss_pred hcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC--CCCCCCCcccc
Q 037941 34 LMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS--LPSTLGDVATV 109 (308)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~~~~~~~l 109 (308)
...+++++|++++|.+..+++ .+ .+++|++|++++|.+++ ++...++++++|++|++++|.+.. .|.. +
T Consensus 47 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------~ 119 (549)
T 2z81_A 47 RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSL------F 119 (549)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCS------C
T ss_pred hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhh------h
Confidence 457889999999999977664 44 89999999999999884 455545789999999999999884 4555 6
Q ss_pred cccccccEEeecCCc-Ccccc-hhhhCcCCCCEEecCCCCCCCccCcc-----------------------hhcCCCCCc
Q 037941 110 GVLKKLVIFSFRNSH-IEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPN-----------------------VISNLPRLE 164 (308)
Q Consensus 110 ~~l~~L~~L~l~~~~-i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~-----------------------~~~~l~~L~ 164 (308)
+.+++|++|++++|. +..+| ..+..+++|+.|++++|......|.. .+..+++|+
T Consensus 120 ~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 199 (549)
T 2z81_A 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVR 199 (549)
T ss_dssp TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBS
T ss_pred hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhccccc
Confidence 777777777777776 55555 45677777777777776633223322 223467788
Q ss_pred eEEccCCcccccccCCcc------------------------cchh----------------------------------
Q 037941 165 ELYMGNSFTHWEVEGQNN------------------------ASLA---------------------------------- 186 (308)
Q Consensus 165 ~L~l~~~~~~~~~~~~~~------------------------~~~~---------------------------------- 186 (308)
.|++++|.+.+....... ....
T Consensus 200 ~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~ 279 (549)
T 2z81_A 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSE 279 (549)
T ss_dssp EEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCC
T ss_pred EEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhh
Confidence 888888777653100000 0000
Q ss_pred -------------------------hhhcCCCCCEEEeeeccCccccchhh--ccCCceeEeeccCccc-------ccCC
Q 037941 187 -------------------------ELNQLSRLTTLEMLILDAQVMPRELF--SLGLERNKIFLGDVWS-------WTGK 232 (308)
Q Consensus 187 -------------------------~l~~l~~L~~L~l~~~~~~~~p~~~~--~~~L~~l~i~~~~~~~-------~~~~ 232 (308)
.....++|+.|++++|.++.+|..++ .++|+.|++..+.+.. +.+.
T Consensus 280 l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 359 (549)
T 2z81_A 280 LGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGA 359 (549)
T ss_dssp CTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTS
T ss_pred hcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhc
Confidence 01123467777777777777787764 3888888887776533 2567
Q ss_pred CCcCceEEEeecCchhhhh--hHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccccccccc
Q 037941 233 YETSRTLKLKLDNRMYLEH--GIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIV 301 (308)
Q Consensus 233 ~~~L~~L~L~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~ 301 (308)
+++|+.|+|+.|....... .....+++|++|++++ +.++.++..+ ..+++|++|++++| +++.++
T Consensus 360 l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~--~~~~~L~~L~Ls~N-~l~~l~ 426 (549)
T 2z81_A 360 WPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISR-NTFHPMPDSC--QWPEKMRFLNLSST-GIRVVK 426 (549)
T ss_dssp STTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTT-CCCCCCCSCC--CCCTTCCEEECTTS-CCSCCC
T ss_pred cccCcEEEccCCcccccccchhhhhcCCCCCEEECCC-CCCccCChhh--cccccccEEECCCC-Cccccc
Confidence 7888888888887655432 2223348888998888 4555543322 45677777777777 455554
No 45
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=7.2e-23 Score=177.53 Aligned_cols=240 Identities=14% Similarity=0.065 Sum_probs=154.4
Q ss_pred cCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941 35 MQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL 112 (308)
Q Consensus 35 ~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l 112 (308)
..+++++|++++|.+..+++ .+ .+++|++|++++|.+++..+ +..+++|++|++++|.+..+|. .
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~~----------~ 98 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----------G 98 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEEE----------C
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCccccccC----------C
Confidence 45689999999999987764 33 89999999999999875433 5789999999999998775543 3
Q ss_pred ccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhh-hcC
Q 037941 113 KKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAEL-NQL 191 (308)
Q Consensus 113 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~l 191 (308)
++|++|++++|.++.++. ..+++|+.|++++|. ++.++...+..+++|++|++++|.+.+..+ ..+ ..+
T Consensus 99 ~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~~l 168 (317)
T 3o53_A 99 PSIETLHAANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-------AELAASS 168 (317)
T ss_dssp TTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEG-------GGGGGGT
T ss_pred CCcCEEECCCCccCCcCc--cccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccH-------HHHhhcc
Confidence 677777777777775553 235667777777776 555554446667777777777777663221 233 356
Q ss_pred CCCCEEEeeeccCccccchhhccCCceeEeeccCccc---ccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCc
Q 037941 192 SRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWS---WTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKL 268 (308)
Q Consensus 192 ~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~ 268 (308)
++|+.|++++|.++.+|.....++|+.|++..+.+.. .+..+++|+.|+|+.|.....+..+.. +++|+.|+++++
T Consensus 169 ~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-l~~L~~L~l~~N 247 (317)
T 3o53_A 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRF-SQNLEHFDLRGN 247 (317)
T ss_dssp TTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCC-CTTCCEEECTTC
T ss_pred CcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhc-CCCCCEEEccCC
Confidence 7777777777777666655555677777766555432 244556677777776655544433333 366777777664
Q ss_pred cchhhhhhccCCCCCCcccEEeccccccccc
Q 037941 269 NGLQNVLHELDGEGFPRLKHLLVQNASEILY 299 (308)
Q Consensus 269 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 299 (308)
+......+.+ ...+++|+.|.+.+++.++.
T Consensus 248 ~~~~~~~~~~-~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 248 GFHCGTLRDF-FSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp CCBHHHHHHH-HHTCHHHHHHHHHHHHHHHS
T ss_pred CccCcCHHHH-HhccccceEEECCCchhccC
Confidence 3331222222 24456666666665544443
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=1e-20 Score=166.33 Aligned_cols=248 Identities=16% Similarity=0.159 Sum_probs=185.6
Q ss_pred CCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccE
Q 037941 38 DPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI 117 (308)
Q Consensus 38 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~ 117 (308)
.....+.+++.+..+|... .++|++|++++|.++ .++...+.++++|++|++++|.+..+++.. +..+++|++
T Consensus 32 ~~~~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~ 104 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGL-TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDS-----FSSLGSLEH 104 (353)
T ss_dssp TTSEEECCSTTCSSCCTTC-CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTT-----TTTCTTCCE
T ss_pred CCeEeeCCCCCcccccccc-cccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhh-----cCCCCCCCE
Confidence 3345788888999998765 359999999999988 455544589999999999999999775543 889999999
Q ss_pred EeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCc-ccccccCCcccchhhhhcCCCC
Q 037941 118 FSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSF-THWEVEGQNNASLAELNQLSRL 194 (308)
Q Consensus 118 L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~l~~L 194 (308)
|++++|.++.+|.. ++.+++|+.|++++|. ++.+|. ..+..+++|+.|++++|. +.... +..+..+++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-------~~~~~~l~~L 176 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-------RKDFAGLTFL 176 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-------TTTTTTCCEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccC-------HHHccCCCCC
Confidence 99999999988876 8899999999999998 778887 558899999999999984 44221 3567889999
Q ss_pred CEEEeeeccCccc-cchhhc-cCCceeEeeccCcccc----cCCCCcCceEEEeecCchhhhhh---HHHHhcccceeec
Q 037941 195 TTLEMLILDAQVM-PRELFS-LGLERNKIFLGDVWSW----TGKYETSRTLKLKLDNRMYLEHG---IKMLLRRTEDLHL 265 (308)
Q Consensus 195 ~~L~l~~~~~~~~-p~~~~~-~~L~~l~i~~~~~~~~----~~~~~~L~~L~L~~~~~~~~~~~---~~~~~~~L~~L~l 265 (308)
++|++++|.+..+ |..+.. ++|+.|++..+.+... ...+++|+.|+++.|........ .....+.++.+.+
T Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L 256 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256 (353)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred CEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence 9999999998776 444444 7888888877665432 33578899999988765442111 1112355666666
Q ss_pred CCccc----hhhhhhccCCCCCCcccEEeccccccccccccC
Q 037941 266 DKLNG----LQNVLHELDGEGFPRLKHLLVQNASEILYIVSS 303 (308)
Q Consensus 266 ~~~~~----~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~~ 303 (308)
.++.- +..++..+ ..+++|+.|++++| +++.+|..
T Consensus 257 ~~~~l~~~~l~~l~~~l--~~l~~L~~L~Ls~N-~l~~i~~~ 295 (353)
T 2z80_A 257 RNVKITDESLFQVMKLL--NQISGLLELEFSRN-QLKSVPDG 295 (353)
T ss_dssp ESCBCCHHHHHHHHHHH--HTCTTCCEEECCSS-CCCCCCTT
T ss_pred ccccccCcchhhhHHHH--hcccCCCEEECCCC-CCCccCHH
Confidence 65321 22222222 56899999999998 78888753
No 47
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=2.1e-20 Score=172.58 Aligned_cols=138 Identities=17% Similarity=0.238 Sum_probs=113.5
Q ss_pred ecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941 22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL 99 (308)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 99 (308)
..+.++..+|.. ..+++++|++++|.+..+++ .+ .+++|++|++++|.+++..|..+ .++++|++|++++|.+..+
T Consensus 7 ls~n~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~l 84 (520)
T 2z7x_B 7 RSKNGLIHVPKD-LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF-KFNQELEYLDLSHNKLVKI 84 (520)
T ss_dssp CTTSCCSSCCCS-CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGG-TTCTTCCEEECCSSCCCEE
T ss_pred cCCCCccccccc-ccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHh-hcccCCCEEecCCCceeec
Confidence 346677778843 45899999999999988775 34 99999999999999985545554 7999999999999999988
Q ss_pred CCCCCCcccccccccccEEeecCCcCcc--cchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCC--ceEEccCCcc
Q 037941 100 PSTLGDVATVGVLKKLVIFSFRNSHIEQ--LPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRL--EELYMGNSFT 173 (308)
Q Consensus 100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 173 (308)
|. . .+++|++|++++|.++. +|..++.+++|+.|++++|. ++.. .+..+++| +.|++++|.+
T Consensus 85 p~-------~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~---~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 85 SC-------H-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEKS---SVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp EC-------C-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCGG---GGGGGTTSCEEEEEEEECTT
T ss_pred Cc-------c-ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cchh---hccccccceeeEEEeecccc
Confidence 87 3 68999999999999985 67889999999999999998 4432 25666777 8888888776
No 48
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.2e-20 Score=171.28 Aligned_cols=242 Identities=17% Similarity=0.198 Sum_probs=194.9
Q ss_pred CCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccE
Q 037941 38 DPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI 117 (308)
Q Consensus 38 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~ 117 (308)
..+.++..+..+..+|... .+++++|++++|.++...+.. |.++++|++|++++|.+..+++.. +..+++|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~~~~~-----~~~l~~L~~ 127 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQADT-FRHLHHLEVLQLGRNSIRQIEVGA-----FNGLASLNT 127 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCCEECTTT-----TTTCTTCCE
T ss_pred CCcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECHHH-cCCCCCCCEEECCCCccCCcChhh-----ccCcccCCE
Confidence 3456777788888888655 369999999999998544444 479999999999999999877543 899999999
Q ss_pred EeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCE
Q 037941 118 FSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTT 196 (308)
Q Consensus 118 L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 196 (308)
|++++|.++.+|.. +..+++|+.|++++|. ++.++...+..+++|+.|++++|...+..+ ...+..+++|+.
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~------~~~~~~l~~L~~ 200 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYIS------EGAFEGLFNLKY 200 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEEC------TTTTTTCTTCCE
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccC------hhhccCCCCCCE
Confidence 99999999988754 8889999999999998 788888778999999999999864332111 246788999999
Q ss_pred EEeeeccCccccchhhccCCceeEeeccCccc----ccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchh
Q 037941 197 LEMLILDAQVMPRELFSLGLERNKIFLGDVWS----WTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQ 272 (308)
Q Consensus 197 L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 272 (308)
|++++|.++.+|......+|+.|++..+.+.. .+..+++|+.|+|+.|...........-+++|+.|++++ +.++
T Consensus 201 L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~ 279 (452)
T 3zyi_A 201 LNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH-NNLS 279 (452)
T ss_dssp EECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCS
T ss_pred EECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC-CcCC
Confidence 99999999999875555999999998776533 467889999999999876655433333359999999998 5667
Q ss_pred hhhhccCCCCCCcccEEeccccc
Q 037941 273 NVLHELDGEGFPRLKHLLVQNAS 295 (308)
Q Consensus 273 ~~~~~~~~~~~~~L~~L~l~~c~ 295 (308)
.++... ...+++|+.|++.+||
T Consensus 280 ~~~~~~-~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 280 SLPHDL-FTPLRYLVELHLHHNP 301 (452)
T ss_dssp CCCTTS-STTCTTCCEEECCSSC
T ss_pred ccChHH-hccccCCCEEEccCCC
Confidence 655433 3668999999999884
No 49
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.86 E-value=2.5e-20 Score=157.84 Aligned_cols=192 Identities=23% Similarity=0.318 Sum_probs=94.2
Q ss_pred CeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEE
Q 037941 39 PIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIF 118 (308)
Q Consensus 39 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L 118 (308)
.+.++++++.+..+|.... ++++.|++++|.++ .++...+.++++|++|++++|.+..+|... +..+++|++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~-----~~~l~~L~~L 90 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGI-----FKELKNLETL 90 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTT-----TSSCTTCCEE
T ss_pred CCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhh-----hcCCCCCCEE
Confidence 3445555555554444332 34555555555544 223222345555555555555555555442 3445555555
Q ss_pred eecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEE
Q 037941 119 SFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTL 197 (308)
Q Consensus 119 ~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 197 (308)
++++|.++.+|. .+..+++|+.|++++|. ++.++...+..+++|+.|++++|.+...+. ..+..+++|+.|
T Consensus 91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-------~~~~~l~~L~~L 162 (270)
T 2o6q_A 91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPK-------GVFDKLTSLKEL 162 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTTCCEE
T ss_pred ECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCH-------hHccCCccccee
Confidence 555555554442 23445555555555554 444444334555555555555555442111 224445555555
Q ss_pred EeeeccCccccchhhc--cCCceeEeeccCccc----ccCCCCcCceEEEeecC
Q 037941 198 EMLILDAQVMPRELFS--LGLERNKIFLGDVWS----WTGKYETSRTLKLKLDN 245 (308)
Q Consensus 198 ~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~ 245 (308)
++++|.++.+|...+. ++|+.|++..+.+.. .+..+++|+.|+|+.|.
T Consensus 163 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 5555555555443222 455555554443322 23456677777777765
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=1.2e-20 Score=175.96 Aligned_cols=139 Identities=17% Similarity=0.216 Sum_probs=108.3
Q ss_pred eecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC
Q 037941 21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS 98 (308)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 98 (308)
-+.+.++..+|. ...+++++|++++|.+..+++ .+ .+++|++|++++|.+++..|.. |.++++|++|++++|.++.
T Consensus 37 ~ls~~~L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~ 114 (562)
T 3a79_B 37 DYSNRNLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV-FLFNQDLEYLDVSHNRLQN 114 (562)
T ss_dssp ECTTSCCCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT-TTTCTTCCEEECTTSCCCE
T ss_pred EcCCCCCccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH-hCCCCCCCEEECCCCcCCc
Confidence 344667777774 346889999999999988775 44 8999999999999988544444 4789999999999999998
Q ss_pred CCCCCCCcccccccccccEEeecCCcCcccc--hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCC--ceEEccCCcc
Q 037941 99 LPSTLGDVATVGVLKKLVIFSFRNSHIEQLP--EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRL--EELYMGNSFT 173 (308)
Q Consensus 99 lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~ 173 (308)
+|.. .+++|++|++++|.++.++ ..++++++|+.|++++|. ++... +..+++| +.|++++|.+
T Consensus 115 lp~~--------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 115 ISCC--------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp ECSC--------CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred cCcc--------ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-cccCc---hhhhhhceeeEEEeecccc
Confidence 8873 6889999999999988654 778999999999999987 44432 3444555 8888888776
No 51
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=1.1e-20 Score=176.31 Aligned_cols=82 Identities=20% Similarity=0.207 Sum_probs=50.3
Q ss_pred hcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCC--CCCCCcccc
Q 037941 34 LMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP--STLGDVATV 109 (308)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~~~~~~~l 109 (308)
...+++++|++++|.+..+++ .+ .+++|++|++++|.++ .+|.. .+++|++|++++|.+..+| .. +
T Consensus 73 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~------~ 142 (562)
T 3a79_B 73 SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKE------F 142 (562)
T ss_dssp TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGG------G
T ss_pred ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHh------h
Confidence 346677777777777766533 33 6777777777777765 45543 5666777777777666543 33 4
Q ss_pred cccccccEEeecCCcC
Q 037941 110 GVLKKLVIFSFRNSHI 125 (308)
Q Consensus 110 ~~l~~L~~L~l~~~~i 125 (308)
+.+++|++|++++|.+
T Consensus 143 ~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 143 GNLTKLTFLGLSAAKF 158 (562)
T ss_dssp GGCTTCCEEEEECSBC
T ss_pred cccCcccEEecCCCcc
Confidence 5555555555555543
No 52
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=3.2e-20 Score=168.59 Aligned_cols=243 Identities=14% Similarity=0.104 Sum_probs=192.5
Q ss_pred ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCC
Q 037941 24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL 103 (308)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~ 103 (308)
+..+..+|.....+++++|++++|.+..+| ...+++|++|++++|.+++ ++ +.++++|++|++++|.++.+|
T Consensus 51 ~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~L~~L~L~~N~l~~l~--- 122 (457)
T 3bz5_A 51 NSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTN-LD---VTPLTKLTYLNCDTNKLTKLD--- 122 (457)
T ss_dssp SSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC-CC---CTTCTTCCEEECCSSCCSCCC---
T ss_pred CCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCce-ee---cCCCCcCCEEECCCCcCCeec---
Confidence 445555665567899999999999998886 4499999999999999885 33 478999999999999999874
Q ss_pred CCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCccc
Q 037941 104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNA 183 (308)
Q Consensus 104 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 183 (308)
++.+++|++|++++|.++.++ ++.+++|+.|++++|..++.++ ++.+++|+.|++++|.+.+
T Consensus 123 -----~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~-------- 184 (457)
T 3bz5_A 123 -----VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE-------- 184 (457)
T ss_dssp -----CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCC--------
T ss_pred -----CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccce--------
Confidence 568999999999999999875 8899999999999997677774 6789999999999999882
Q ss_pred chhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccc-cCCCCcCceEEEeecCchhhhhhHHHHhcccce
Q 037941 184 SLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSW-TGKYETSRTLKLKLDNRMYLEHGIKMLLRRTED 262 (308)
Q Consensus 184 ~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~ 262 (308)
. .+..+++|+.|++++|.++.++ ....++|+.|++..+.+... ...+++|+.|+++.|.....+ .. .+++|+.
T Consensus 185 l--~l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~--~~-~l~~L~~ 258 (457)
T 3bz5_A 185 L--DVSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELD--VS-TLSKLTT 258 (457)
T ss_dssp C--CCTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CT-TCTTCCE
T ss_pred e--ccccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcC--HH-HCCCCCE
Confidence 1 2678899999999999988874 22238999999987765442 567889999999998765543 21 2355555
Q ss_pred e----------ecCCccchhhhhhccCCCCCCcccEEecccccccccccc
Q 037941 263 L----------HLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVS 302 (308)
Q Consensus 263 L----------~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~ 302 (308)
| +++++..... ++.+.+++|+.|++++|+.+..+|.
T Consensus 259 L~l~~n~L~~L~l~~n~~~~~----~~~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 259 LHCIQTDLLEIDLTHNTQLIY----FQAEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp EECTTCCCSCCCCTTCTTCCE----EECTTCTTCCCCCCTTCTTCCEEEC
T ss_pred EeccCCCCCEEECCCCccCCc----ccccccccCCEEECCCCcccceecc
Confidence 5 4444433332 3346789999999999999999884
No 53
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=1.1e-20 Score=171.63 Aligned_cols=153 Identities=16% Similarity=0.197 Sum_probs=118.9
Q ss_pred eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCcccccccccccEE
Q 037941 40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVLKKLVIF 118 (308)
Q Consensus 40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~~l~~L~~L 118 (308)
+.++..++.+..+|. -.+++++|++++|.+++..+..+ .++++|++|++++|.+. .+|+.. +..+++|++|
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~i~~~~-----~~~l~~L~~L 84 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRNNT-----FRGLSSLIIL 84 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTT-SSCTTCCEEECCCCSTTCEECTTT-----TTTCTTCCEE
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHh-ccCccccEEECcCCcccceECccc-----ccccccCCEE
Confidence 356777778888887 34899999999999985545554 79999999999999987 665543 8999999999
Q ss_pred eecCCcCccc-chhhhCcCCCCEEecCCCCCCCccC-cchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCE
Q 037941 119 SFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIR-PNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTT 196 (308)
Q Consensus 119 ~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 196 (308)
++++|.++.+ |..++.+++|++|++++|...+..+ ...++.+++|++|++++|.+.+..+. ..+..+++|++
T Consensus 85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~------~~~~~l~~L~~ 158 (455)
T 3v47_A 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA------SFFLNMRRFHV 158 (455)
T ss_dssp ECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC------GGGGGCTTCCE
T ss_pred eCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc------cccCCCCcccE
Confidence 9999999955 7789999999999999998333233 23478899999999999998844321 12566677777
Q ss_pred EEeeeccCcc
Q 037941 197 LEMLILDAQV 206 (308)
Q Consensus 197 L~l~~~~~~~ 206 (308)
|++++|.+..
T Consensus 159 L~L~~n~l~~ 168 (455)
T 3v47_A 159 LDLTFNKVKS 168 (455)
T ss_dssp EECTTCCBSC
T ss_pred EeCCCCcccc
Confidence 7776665443
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=1.9e-20 Score=178.32 Aligned_cols=250 Identities=17% Similarity=0.140 Sum_probs=122.7
Q ss_pred CCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcC-CCCchhhcC--CCCccEEEccCCCCCCCCCCCCCcccccc
Q 037941 37 KDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSL-VIPDLFFEG--VPSLQVLSLNGFHFPSLPSTLGDVATVGV 111 (308)
Q Consensus 37 ~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~-~~~~~~~~~--l~~L~~L~l~~~~~~~lp~~~~~~~~l~~ 111 (308)
+++++|++++|.+..+++.. .+++|++|++++|.+.. .++...|.. ...|++|++++|.+..+++.. +..
T Consensus 329 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~-----~~~ 403 (680)
T 1ziw_A 329 KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA-----FSW 403 (680)
T ss_dssp TTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT-----TTT
T ss_pred CCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh-----hhC
Confidence 44455555555444333322 44555555554443211 111111111 134444444455554332221 556
Q ss_pred cccccEEeecCCcCc-ccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhh
Q 037941 112 LKKLVIFSFRNSHIE-QLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELN 189 (308)
Q Consensus 112 l~~L~~L~l~~~~i~-~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 189 (308)
+++|++|++++|.+. .+| ..+..+++|+.|++++|. +..++...+..+++|+.|++++|.+... ...+..+.
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~p~~~~ 477 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNV-----DSSPSPFQ 477 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCT-----TCSSCTTT
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-cceeChhhhhcCcccccchhcccccccc-----ccCCcccc
Confidence 666666666666665 344 445666666666666665 3333333355555555555555544311 12234556
Q ss_pred cCCCCCEEEeeeccCccccchhhc--cCCceeEeeccCcccc------------cCCCCcCceEEEeecCchhhhhhHHH
Q 037941 190 QLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFLGDVWSW------------TGKYETSRTLKLKLDNRMYLEHGIKM 255 (308)
Q Consensus 190 ~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~~------------~~~~~~L~~L~L~~~~~~~~~~~~~~ 255 (308)
.+++|+.|++++|.++.+|...+. .+|+.|++..+.+... +..++.|+.|+|+.|.....+.....
T Consensus 478 ~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~ 557 (680)
T 1ziw_A 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557 (680)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcc
Confidence 666677777776666666654332 6666666655543221 34456666666666654443333222
Q ss_pred HhcccceeecCCccchhhhhhccCCCCCCcccEEecccccccccc
Q 037941 256 LLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYI 300 (308)
Q Consensus 256 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i 300 (308)
-+++|+.|++++ +.++.++... ...+++|+.|++++| ++..+
T Consensus 558 ~l~~L~~L~Ls~-N~l~~l~~~~-~~~l~~L~~L~L~~N-~l~~~ 599 (680)
T 1ziw_A 558 DLFELKIIDLGL-NNLNTLPASV-FNNQVSLKSLNLQKN-LITSV 599 (680)
T ss_dssp TCTTCCEEECCS-SCCCCCCTTT-TTTCTTCCEEECTTS-CCCBC
T ss_pred cccCcceeECCC-CCCCcCCHhH-hCCCCCCCEEECCCC-cCCcc
Confidence 235666666655 4444433221 234455555555555 44433
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=3.4e-20 Score=173.75 Aligned_cols=226 Identities=19% Similarity=0.166 Sum_probs=178.3
Q ss_pred CCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941 36 QKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL 115 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L 115 (308)
..+++.|+++++.+..+|.... ++|++|++++|.++ .+|. .+++|++|++++|.++.+|.. +++|
T Consensus 39 ~~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~~---------l~~L 103 (622)
T 3g06_A 39 NNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---------PPGL 103 (622)
T ss_dssp HHCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCCC---------CTTC
T ss_pred CCCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCCC---------CCCC
Confidence 3468999999999999988665 89999999999987 5665 579999999999999998885 6899
Q ss_pred cEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcC----
Q 037941 116 VIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQL---- 191 (308)
Q Consensus 116 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l---- 191 (308)
++|++++|.++.+|. .+++|+.|++++|. ++.+|.. +++|++|++++|.+.+.+. .+..+..+
T Consensus 104 ~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~----l~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~L~~ 170 (622)
T 3g06_A 104 LELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL----PPGLQELSVSDNQLASLPA-----LPSELCKLWAYN 170 (622)
T ss_dssp CEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC----CTTCCEEECCSSCCSCCCC-----CCTTCCEEECCS
T ss_pred CEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC----CCCCCEEECcCCcCCCcCC-----ccCCCCEEECCC
Confidence 999999999999888 67899999999998 7888864 4899999999998885322 12223222
Q ss_pred ----------CCCCEEEeeeccCccccchhhccCCceeEeeccCcccccCCCCcCceEEEeecCchhhhhhHHHHhcccc
Q 037941 192 ----------SRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTE 261 (308)
Q Consensus 192 ----------~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~ 261 (308)
++|+.|++++|.++.+|.. ..+|+.|.+..+.+......+++|+.|+|+.|.....+ ..+++|+
T Consensus 171 N~l~~l~~~~~~L~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~lp----~~l~~L~ 244 (622)
T 3g06_A 171 NQLTSLPMLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLP----VLPSELK 244 (622)
T ss_dssp SCCSCCCCCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCC----CCCTTCC
T ss_pred CCCCCCcccCCCCcEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCCCCCCCEEEccCCccCcCC----CCCCcCc
Confidence 6788888888877777754 36778887777776666666788889998888665433 3348899
Q ss_pred eeecCCccchhhhhhccCCCCCCcccEEecccccccccccc
Q 037941 262 DLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILYIVS 302 (308)
Q Consensus 262 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~i~~ 302 (308)
+|++++ +.++.++. .+++|+.|++++| ++..+|.
T Consensus 245 ~L~Ls~-N~L~~lp~-----~~~~L~~L~Ls~N-~L~~lp~ 278 (622)
T 3g06_A 245 ELMVSG-NRLTSLPM-----LPSGLLSLSVYRN-QLTRLPE 278 (622)
T ss_dssp EEECCS-SCCSCCCC-----CCTTCCEEECCSS-CCCSCCG
T ss_pred EEECCC-CCCCcCCc-----ccccCcEEeCCCC-CCCcCCH
Confidence 999988 56665432 5688999999998 7778774
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=170.30 Aligned_cols=242 Identities=16% Similarity=0.212 Sum_probs=195.4
Q ss_pred CCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccE
Q 037941 38 DPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI 117 (308)
Q Consensus 38 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~ 117 (308)
..+.++..+..+..+|.... ++++.|++++|.++...+ ..|.++++|++|++++|.+..++... +..+++|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~-----~~~l~~L~~ 116 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNHIRTIEIGA-----FNGLANLNT 116 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECT-TTTSSCSSCCEEECCSSCCCEECGGG-----GTTCSSCCE
T ss_pred CCCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCH-HHhhCCCCCCEEECCCCcCCccChhh-----ccCCccCCE
Confidence 34567777888888887663 789999999999885444 44589999999999999999877553 899999999
Q ss_pred EeecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCE
Q 037941 118 FSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTT 196 (308)
Q Consensus 118 L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 196 (308)
|++++|.++.+|. .+..+++|+.|++++|. ++.++...+..+++|+.|++++|......+ ...+..+++|+.
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~------~~~~~~l~~L~~ 189 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYIS------EGAFEGLSNLRY 189 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEEC------TTTTTTCSSCCE
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeC------cchhhcccccCe
Confidence 9999999998875 58899999999999998 788887778999999999999865332111 246788999999
Q ss_pred EEeeeccCccccchhhccCCceeEeeccCccc----ccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchh
Q 037941 197 LEMLILDAQVMPRELFSLGLERNKIFLGDVWS----WTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQ 272 (308)
Q Consensus 197 L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~----~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 272 (308)
|++++|.++.+|......+|+.|++..+.+.. .+..+++|+.|+|+.|...........-+++|++|++++ +.++
T Consensus 190 L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~ 268 (440)
T 3zyj_A 190 LNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH-NNLT 268 (440)
T ss_dssp EECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT-SCCC
T ss_pred ecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC-CCCC
Confidence 99999999999975555999999998776543 467889999999999876655443333359999999998 6777
Q ss_pred hhhhccCCCCCCcccEEeccccc
Q 037941 273 NVLHELDGEGFPRLKHLLVQNAS 295 (308)
Q Consensus 273 ~~~~~~~~~~~~~L~~L~l~~c~ 295 (308)
.++... ...+++|+.|++.++|
T Consensus 269 ~~~~~~-~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 269 LLPHDL-FTPLHHLERIHLHHNP 290 (440)
T ss_dssp CCCTTT-TSSCTTCCEEECCSSC
T ss_pred ccChhH-hccccCCCEEEcCCCC
Confidence 655433 3668999999999875
No 57
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=173.61 Aligned_cols=154 Identities=14% Similarity=0.093 Sum_probs=99.5
Q ss_pred hCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCcc-ccchh
Q 037941 133 GQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQV-MPREL 211 (308)
Q Consensus 133 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~p~~~ 211 (308)
..+++|+.|++++|...+..|.. ++.+++|+.|++++|.+.+. ...+..++.+++|+.|++++|.+.. +|...
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l-----~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~ 394 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKEL-----SKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBH-----HHHHHHHTTCTTCCEEECCSSCCBCCGGGCS
T ss_pred hhCCcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCcc-----ccchHHHhhCCCCCEEECCCCcCCcccccch
Confidence 45566677777776633334444 56677777777777766621 1223457778888888888887776 77653
Q ss_pred hc--cCCceeEeeccCccc-ccCCC-CcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCccc
Q 037941 212 FS--LGLERNKIFLGDVWS-WTGKY-ETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLK 287 (308)
Q Consensus 212 ~~--~~L~~l~i~~~~~~~-~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 287 (308)
+. ++|+.|++..+.+.. .+..+ ++|+.|+|+.|.....+..+.. +++|++|++++ +.++.++.. ....+++|+
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~-l~~L~~L~L~~-N~l~~l~~~-~~~~l~~L~ 471 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVK-LEALQELNVAS-NQLKSVPDG-IFDRLTSLQ 471 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGG-CTTCCEEECCS-SCCCCCCTT-TTTTCTTCC
T ss_pred hccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhc-CCCCCEEECCC-CcCCccCHH-HhccCCccc
Confidence 33 778888777666533 22233 5788888888776655555554 48888888887 455655443 135677888
Q ss_pred EEeccccc
Q 037941 288 HLLVQNAS 295 (308)
Q Consensus 288 ~L~l~~c~ 295 (308)
.|++++|+
T Consensus 472 ~L~l~~N~ 479 (520)
T 2z7x_B 472 KIWLHTNP 479 (520)
T ss_dssp EEECCSSC
T ss_pred EEECcCCC
Confidence 88888774
No 58
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=1.7e-20 Score=159.31 Aligned_cols=213 Identities=17% Similarity=0.209 Sum_probs=162.9
Q ss_pred ecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941 22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL 99 (308)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 99 (308)
+.+.++.++|. ...+++++|++++|.+..+++ .+ .+++|++|++++|.++ .++...+.++++|++|++++|.+..+
T Consensus 14 c~~~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 14 CMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp CTTSCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred ecCCCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCcc
Confidence 44566677774 346789999999999987766 34 8999999999999887 44444457899999999999999977
Q ss_pred CCCCCCcccccccccccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCc--cCcchhcCCCCCceEEccCCccccc
Q 037941 100 PSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKS--IRPNVISNLPRLEELYMGNSFTHWE 176 (308)
Q Consensus 100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~ 176 (308)
+... +..+++|++|++++|.++.++. .++.+++|+.|++++|. ++. +|.. ++.+++|++|++++|.+.+.
T Consensus 92 ~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 92 ALGA-----FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CTTT-----TTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEECCSSCCCEE
T ss_pred Chhh-----hcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchh-hccCCCCCEEECCCCCCCcC
Confidence 6543 8889999999999999887765 58899999999999998 555 4655 88899999999999988843
Q ss_pred ccCCcccchhhhhcCCCCC-EEEeeeccCccccchhhc-cCCceeEeeccCcccc----cCCCCcCceEEEeecCch
Q 037941 177 VEGQNNASLAELNQLSRLT-TLEMLILDAQVMPRELFS-LGLERNKIFLGDVWSW----TGKYETSRTLKLKLDNRM 247 (308)
Q Consensus 177 ~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~p~~~~~-~~L~~l~i~~~~~~~~----~~~~~~L~~L~L~~~~~~ 247 (308)
.+ .....+..++.+. .|++++|.++.++...+. .+|+.|++..+.+... +..+++|+.|+|+.|...
T Consensus 165 ~~----~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 165 YC----TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CG----GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CH----HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 32 2334445555555 899999998888776655 6788888876654332 456778888888877544
No 59
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.85 E-value=7.7e-20 Score=154.80 Aligned_cols=189 Identities=22% Similarity=0.327 Sum_probs=160.7
Q ss_pred ecccchhhHhhhhcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941 22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL 99 (308)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 99 (308)
+.+..+..+|. ...+++++|++++|.+..+++. + .+++|++|++++|.++ .++...|.++++|++|++++|.+..+
T Consensus 23 ~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~ 100 (270)
T 2o6q_A 23 CSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100 (270)
T ss_dssp CTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCC
T ss_pred ccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcC
Confidence 44667777773 3467899999999999888763 4 8999999999999987 66777778899999999999999999
Q ss_pred CCCCCCcccccccccccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccccc
Q 037941 100 PSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE 178 (308)
Q Consensus 100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 178 (308)
|... +..+++|++|++++|.++.++. .+..+++|+.|++++|. ++.+|...+..+++|+.|++++|.+...++
T Consensus 101 ~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 101 PIGV-----FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CTTT-----TTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CHhH-----cccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 8765 7899999999999999997764 57899999999999998 788888778899999999999999884332
Q ss_pred CCcccchhhhhcCCCCCEEEeeeccCccccchhhc--cCCceeEeeccC
Q 037941 179 GQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS--LGLERNKIFLGD 225 (308)
Q Consensus 179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~ 225 (308)
..+..+++|+.|++++|.++.+|...+. ++|+.+++..+.
T Consensus 175 -------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 175 -------GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 4577899999999999999999887544 889999887665
No 60
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=3.5e-20 Score=158.51 Aligned_cols=194 Identities=18% Similarity=0.168 Sum_probs=127.4
Q ss_pred CCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941 36 QKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL 115 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L 115 (308)
.++++.++++++.+..+|..+. ++++.|++++|.++...+. .+..+++|++|++++|.++.+|. .+.+++|
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~-------~~~l~~L 79 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKLQV-------DGTLPVL 79 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEEEC-------CSCCTTC
T ss_pred cCCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcccC-------CCCCCcC
Confidence 5567777777777776665543 5677777777776633333 34567777777777777776655 3456777
Q ss_pred cEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCC
Q 037941 116 VIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLT 195 (308)
Q Consensus 116 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~ 195 (308)
++|++++|.++.+|..+..+++|+.|++++|. ++.++.+.+..+++|+.|++++|.+...++ ..+..+++|+
T Consensus 80 ~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~ 151 (290)
T 1p9a_G 80 GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPP-------GLLTPTPKLE 151 (290)
T ss_dssp CEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCT-------TTTTTCTTCC
T ss_pred CEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccCh-------hhcccccCCC
Confidence 77777777777777667777777777777776 566665556777777777777777663322 3455667777
Q ss_pred EEEeeeccCccccchhhc--cCCceeEeeccCccc---ccCCCCcCceEEEeecCc
Q 037941 196 TLEMLILDAQVMPRELFS--LGLERNKIFLGDVWS---WTGKYETSRTLKLKLDNR 246 (308)
Q Consensus 196 ~L~l~~~~~~~~p~~~~~--~~L~~l~i~~~~~~~---~~~~~~~L~~L~L~~~~~ 246 (308)
.|++++|.++.+|...+. ++|+.|++..+.+.. .......|+.++|+.|..
T Consensus 152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 777777777777766543 667777766555433 334455677777777653
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=175.34 Aligned_cols=146 Identities=23% Similarity=0.249 Sum_probs=116.0
Q ss_pred ccchhhHhhh--hcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941 24 ISDLREVFED--LMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL 99 (308)
Q Consensus 24 ~~~~~~~~~~--~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 99 (308)
++.+..++.. ...+++++|++++|.+..+++. + .+++|++|++++|.++. ++...|.++++|++|++++|.+..+
T Consensus 37 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l 115 (570)
T 2z63_A 37 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASL 115 (570)
T ss_dssp SCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTSCCCCS
T ss_pred CCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCccccccccccccccccC
Confidence 3444444422 4578999999999999877654 4 89999999999999874 4444458999999999999999998
Q ss_pred CCCCCCcccccccccccEEeecCCcCcc--cchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCC----ceEEccCCcc
Q 037941 100 PSTLGDVATVGVLKKLVIFSFRNSHIEQ--LPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRL----EELYMGNSFT 173 (308)
Q Consensus 100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L----~~L~l~~~~~ 173 (308)
|... ++.+++|++|++++|.++. +|..++++++|++|++++|. ++.++...++.+.+| +.+++++|.+
T Consensus 116 ~~~~-----~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 116 ENFP-----IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp TTCS-----CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred CCcc-----ccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCc
Confidence 8743 8899999999999999884 78889999999999999998 666655446666666 6777777766
Q ss_pred ccc
Q 037941 174 HWE 176 (308)
Q Consensus 174 ~~~ 176 (308)
.+.
T Consensus 190 ~~~ 192 (570)
T 2z63_A 190 NFI 192 (570)
T ss_dssp CEE
T ss_pred eec
Confidence 543
No 62
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=3.2e-20 Score=157.56 Aligned_cols=212 Identities=18% Similarity=0.148 Sum_probs=153.7
Q ss_pred EEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeec
Q 037941 42 ISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFR 121 (308)
Q Consensus 42 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~ 121 (308)
++-.+..+..+|.... +++++|++++|.++. ++...+.++++|++|++++|.+..++... +..+++|++|+++
T Consensus 12 ~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~L~ 84 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP-FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGA-----YQSLSHLSTLILT 84 (276)
T ss_dssp EECTTSCCSSCCSSSC-TTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTT-----TTTCTTCCEEECT
T ss_pred EEecCCCccccCCCCC-CCccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHH-----ccCCcCCCEEECC
Confidence 4444555677776552 589999999999884 44434578999999999999999887743 8899999999999
Q ss_pred CCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEee
Q 037941 122 NSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEML 200 (308)
Q Consensus 122 ~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 200 (308)
+|.++.++ ..+..+++|+.|++++|. +..++...++.+++|++|++++|.+... ..+..+..+++|++|+++
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~------~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSF------KLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCC------CCCGGGGGCTTCCEEECC
T ss_pred CCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCcccee------cCchhhccCCCCCEEECC
Confidence 99999666 668999999999999998 6666664488999999999999998732 134678899999999999
Q ss_pred eccCccccchhhc--cCCc----eeEeeccCcccc---cCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCC
Q 037941 201 ILDAQVMPRELFS--LGLE----RNKIFLGDVWSW---TGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDK 267 (308)
Q Consensus 201 ~~~~~~~p~~~~~--~~L~----~l~i~~~~~~~~---~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~ 267 (308)
+|.++.++..... .+|+ .+++..+.+... .....+|+.|+|+.|.....+.....-+++|++|++++
T Consensus 158 ~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp SSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred CCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 9998887654332 5555 455554443322 11223566666666654443333322236666666664
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=2.8e-22 Score=173.40 Aligned_cols=238 Identities=15% Similarity=0.178 Sum_probs=172.4
Q ss_pred CCCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCc-CCCCchhh------cCCCCccEEEccCCCCC-CCCCCCCCc
Q 037941 36 QKDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLS-LVIPDLFF------EGVPSLQVLSLNGFHFP-SLPSTLGDV 106 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~------~~l~~L~~L~l~~~~~~-~lp~~~~~~ 106 (308)
.++++.+++.+|.+ .+|... .. ++.|++++|.+. ..++..+. .++++|++|++++|.+. .+|..
T Consensus 42 ~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---- 114 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP---- 114 (312)
T ss_dssp EEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC----
T ss_pred CCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH----
Confidence 44577777788877 666644 32 888888888773 34554431 15888999999998887 67776
Q ss_pred ccc--cccccccEEeecCCcCcccchhhhCc-----CCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccC
Q 037941 107 ATV--GVLKKLVIFSFRNSHIEQLPEEIGQL-----TRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEG 179 (308)
Q Consensus 107 ~~l--~~l~~L~~L~l~~~~i~~l~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 179 (308)
+ ..+++|++|++++|.++.+|..++.+ ++|+.|++++|. ++.++...++.+++|++|++++|.+.+..
T Consensus 115 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-- 189 (312)
T 1wwl_A 115 --LLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGER-- 189 (312)
T ss_dssp --SSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHH--
T ss_pred --HHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcch--
Confidence 4 78888999999999888777777766 889999999888 66666545888889999999988865211
Q ss_pred Ccccchhhh--hcCCCCCEEEeeeccCccccc---hhhc--cCCceeEeeccCccc-----ccCCCCcCceEEEeecCch
Q 037941 180 QNNASLAEL--NQLSRLTTLEMLILDAQVMPR---ELFS--LGLERNKIFLGDVWS-----WTGKYETSRTLKLKLDNRM 247 (308)
Q Consensus 180 ~~~~~~~~l--~~l~~L~~L~l~~~~~~~~p~---~~~~--~~L~~l~i~~~~~~~-----~~~~~~~L~~L~L~~~~~~ 247 (308)
..+..+ ..+++|++|++++|.++.++. .++. ++|+.|++..+.+.. ....+++|+.|+|+.|...
T Consensus 190 ---~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 190 ---GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp ---HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred ---HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 112333 678889999999888875443 3322 688888887776544 2344689999999998766
Q ss_pred hhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccccc
Q 037941 248 YLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNAS 295 (308)
Q Consensus 248 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 295 (308)
..+..+. ++|++|++++ +.++.++ . ...+++|+.|++.+++
T Consensus 267 ~ip~~~~---~~L~~L~Ls~-N~l~~~p-~--~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 267 QVPKGLP---AKLSVLDLSY-NRLDRNP-S--PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCSSCC---SEEEEEECCS-SCCCSCC-C--TTTSCEEEEEECTTCT
T ss_pred hhhhhcc---CCceEEECCC-CCCCCCh-h--HhhCCCCCEEeccCCC
Confidence 5444332 7999999998 6777653 2 3678999999999983
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=1.7e-21 Score=168.88 Aligned_cols=232 Identities=13% Similarity=0.099 Sum_probs=180.2
Q ss_pred CeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccccc
Q 037941 39 PIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLV 116 (308)
Q Consensus 39 l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~ 116 (308)
++..+++.+.+...+... .+++|++|++++|.++.. +...+.++++|++|++++|.+..+++ +..+++|+
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~-------~~~l~~L~ 83 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD-------LESLSTLR 83 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE-------ETTCTTCC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh-------hhhcCCCC
Confidence 444555555553333333 677999999999999854 44445899999999999999987665 78899999
Q ss_pred EEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCE
Q 037941 117 IFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTT 196 (308)
Q Consensus 117 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 196 (308)
+|++++|.++.++. .++|+.|++++|. ++.++.. .+++|+.|++++|.+.+..+ ..+..+++|+.
T Consensus 84 ~L~Ls~n~l~~l~~----~~~L~~L~l~~n~-l~~~~~~---~~~~L~~L~l~~N~l~~~~~-------~~~~~l~~L~~ 148 (317)
T 3o53_A 84 TLDLNNNYVQELLV----GPSIETLHAANNN-ISRVSCS---RGQGKKNIYLANNKITMLRD-------LDEGCRSRVQY 148 (317)
T ss_dssp EEECCSSEEEEEEE----CTTCCEEECCSSC-CSEEEEC---CCSSCEEEECCSSCCCSGGG-------BCTGGGSSEEE
T ss_pred EEECcCCccccccC----CCCcCEEECCCCc-cCCcCcc---ccCCCCEEECCCCCCCCccc-------hhhhccCCCCE
Confidence 99999999987764 3899999999998 6766653 47899999999999884322 46678899999
Q ss_pred EEeeeccCccccchhh---ccCCceeEeeccCccccc--CCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccch
Q 037941 197 LEMLILDAQVMPRELF---SLGLERNKIFLGDVWSWT--GKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGL 271 (308)
Q Consensus 197 L~l~~~~~~~~p~~~~---~~~L~~l~i~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 271 (308)
|++++|.++.++.... .++|+.|++..+.+.... ..+++|+.|+|+.|........+..+ ++|++|++++ +.+
T Consensus 149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l-~~L~~L~L~~-N~l 226 (317)
T 3o53_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSA-AGVTWISLRN-NKL 226 (317)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGG-TTCSEEECTT-SCC
T ss_pred EECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhccc-CcccEEECcC-Ccc
Confidence 9999999888654433 289999999888765542 34889999999999877665555554 9999999998 566
Q ss_pred hhhhhccCCCCCCcccEEeccccccc
Q 037941 272 QNVLHELDGEGFPRLKHLLVQNASEI 297 (308)
Q Consensus 272 ~~~~~~~~~~~~~~L~~L~l~~c~~l 297 (308)
+.++..+ ..+++|+.|++++|+--
T Consensus 227 ~~l~~~~--~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 227 VLIEKAL--RFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CEECTTC--CCCTTCCEEECTTCCCB
T ss_pred cchhhHh--hcCCCCCEEEccCCCcc
Confidence 7655433 67899999999998543
No 65
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=7.1e-20 Score=158.00 Aligned_cols=191 Identities=15% Similarity=0.150 Sum_probs=162.1
Q ss_pred cCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccccc
Q 037941 35 MQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKK 114 (308)
Q Consensus 35 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~ 114 (308)
.++++++|++.++.+..++....+++|++|++++|.++. ++. +..+++|++|++++|.+..+|. +..+++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~-~~~--~~~l~~L~~L~L~~n~l~~~~~-------~~~l~~ 108 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD-LAP--LKNLTKITELELSGNPLKNVSA-------IAGLQS 108 (308)
T ss_dssp HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCCSCCEEECCSCCCSCCGG-------GTTCTT
T ss_pred HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCC-Chh--HccCCCCCEEEccCCcCCCchh-------hcCCCC
Confidence 477899999999999988865599999999999999874 444 5799999999999999998864 889999
Q ss_pred ccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCC
Q 037941 115 LVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRL 194 (308)
Q Consensus 115 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L 194 (308)
|++|++++|.++.++. +..+++|+.|++++|. ++.++. ++.+++|+.|++++|.+.+ ...+..+++|
T Consensus 109 L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~---------~~~l~~l~~L 175 (308)
T 1h6u_A 109 IKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP--LAGLTNLQYLSIGNAQVSD---------LTPLANLSKL 175 (308)
T ss_dssp CCEEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTTCCEEECCSSCCCC---------CGGGTTCTTC
T ss_pred CCEEECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc--ccCCCCccEEEccCCcCCC---------ChhhcCCCCC
Confidence 9999999999998886 8999999999999998 777776 7899999999999999882 1237889999
Q ss_pred CEEEeeeccCccccchhhccCCceeEeeccCcccc--cCCCCcCceEEEeecCchh
Q 037941 195 TTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSW--TGKYETSRTLKLKLDNRMY 248 (308)
Q Consensus 195 ~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~--~~~~~~L~~L~L~~~~~~~ 248 (308)
+.|++++|.++.++.....++|+.|++..+.+... ...+++|+.|+|+.|....
T Consensus 176 ~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 176 TTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred CEEECCCCccCcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence 99999999999888744448899999887765443 5677889999998876543
No 66
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=2.8e-20 Score=157.68 Aligned_cols=174 Identities=22% Similarity=0.285 Sum_probs=141.8
Q ss_pred hcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccc
Q 037941 34 LMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLK 113 (308)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~ 113 (308)
...++++.|++.++.+..++....+++|++|++++|.+++ ++ . +..+++|++|++++|.+..+|+.. +..++
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~-~-l~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~ 109 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-IS-A-LKELTNLTYLILTGNQLQSLPNGV-----FDKLT 109 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CG-G-GTTCTTCCEEECTTSCCCCCCTTT-----TTTCT
T ss_pred ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-ch-h-hcCCCCCCEEECCCCccCccChhH-----hcCCc
Confidence 3478899999999999888876699999999999999874 33 3 478999999999999999888764 78999
Q ss_pred cccEEeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCC
Q 037941 114 KLVIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS 192 (308)
Q Consensus 114 ~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~ 192 (308)
+|++|++++|.++.++.. ++.+++|+.|++++|. ++.++...++.+++|+.|++++|.+.+..+ ..+..++
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~~~~~l~ 181 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFDKLTNLTELDLSYNQLQSLPE-------GVFDKLT 181 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCT
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCc-cCccCHHHhccCccCCEEECCCCCcCccCH-------HHhcCCc
Confidence 999999999999977654 7889999999999998 778887767899999999999999883332 4567889
Q ss_pred CCCEEEeeeccCccccchhhc--cCCceeEeec
Q 037941 193 RLTTLEMLILDAQVMPRELFS--LGLERNKIFL 223 (308)
Q Consensus 193 ~L~~L~l~~~~~~~~p~~~~~--~~L~~l~i~~ 223 (308)
+|+.|++++|.++.++..... ++|+.|++..
T Consensus 182 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 214 (272)
T 3rfs_A 182 QLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 214 (272)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred cCCEEECCCCcCCccCHHHHhCCcCCCEEEccC
Confidence 999999999988776654321 4444444443
No 67
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=2e-19 Score=163.26 Aligned_cols=95 Identities=18% Similarity=0.312 Sum_probs=55.5
Q ss_pred CCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccE
Q 037941 38 DPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI 117 (308)
Q Consensus 38 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~ 117 (308)
++++|++++|.+..++.. .++|++|++++|.+++ +|. +.++++|++|++++|.+..+|.. + .+|++
T Consensus 112 ~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~~-lp~--~~~l~~L~~L~l~~N~l~~lp~~------~---~~L~~ 177 (454)
T 1jl5_A 112 SLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLEK-LPE--LQNSSFLKIIDVDNNSLKKLPDL------P---PSLEF 177 (454)
T ss_dssp TCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSCCCCC------C---TTCCE
T ss_pred CCcEEECCCCccCcccCC--CCCCCEEECcCCCCCC-Ccc--cCCCCCCCEEECCCCcCcccCCC------c---ccccE
Confidence 344444444444333321 1578888888887774 663 46788888888888887777764 1 25555
Q ss_pred EeecCCcCcccchhhhCcCCCCEEecCCCC
Q 037941 118 FSFRNSHIEQLPEEIGQLTRLKLLDLSTCS 147 (308)
Q Consensus 118 L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~ 147 (308)
|++++|.++.+| .++.+++|+.|++++|.
T Consensus 178 L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 178 IAAGNNQLEELP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp EECCSSCCSSCC-CCTTCTTCCEEECCSSC
T ss_pred EECcCCcCCcCc-cccCCCCCCEEECCCCc
Confidence 555555555554 24555555555555544
No 68
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.83 E-value=6e-20 Score=157.05 Aligned_cols=187 Identities=21% Similarity=0.206 Sum_probs=159.9
Q ss_pred ecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941 22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL 99 (308)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 99 (308)
+.+.++..+|. ...+++++|++++|.+..+++ .+ .+++|++|++++|.++. ++.. ..+++|++|++++|.+..+
T Consensus 17 ~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~--~~l~~L~~L~Ls~N~l~~l 92 (290)
T 1p9a_G 17 CDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD--GTLPVLGTLDLSHNQLQSL 92 (290)
T ss_dssp CTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC--SCCTTCCEEECCSSCCSSC
T ss_pred CCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC--CCCCcCCEEECCCCcCCcC
Confidence 44667777773 346899999999999977754 34 99999999999999874 3332 6899999999999999999
Q ss_pred CCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccccc
Q 037941 100 PSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE 178 (308)
Q Consensus 100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 178 (308)
|.. +..+++|++|++++|.++.+| ..+..+++|+.|++++|. ++.+|.+.+..+++|+.|++++|.+...+.
T Consensus 93 ~~~------~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 93 PLL------GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp CCC------TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred chh------hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCCccCH
Confidence 998 889999999999999999887 568999999999999998 788888878899999999999999883332
Q ss_pred CCcccchhhhhcCCCCCEEEeeeccCccccchhhc-cCCceeEeeccCc
Q 037941 179 GQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS-LGLERNKIFLGDV 226 (308)
Q Consensus 179 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~-~~L~~l~i~~~~~ 226 (308)
..+..+++|+.|++++|.++.+|..++. .+|+.+.+..+..
T Consensus 166 -------~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 166 -------GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp -------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred -------HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCc
Confidence 4567899999999999999999998877 8899998876653
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.8e-21 Score=178.27 Aligned_cols=232 Identities=14% Similarity=0.079 Sum_probs=162.1
Q ss_pred CCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccc
Q 037941 36 QKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLK 113 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~ 113 (308)
.+++++|++++|.+..+++ .+ .+++|++|++++|.+++..+ +..+++|++|++++|.+..+|. .+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~----------~~ 99 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----------GP 99 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE----------CT
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC----------CC
Confidence 4489999999999987764 44 89999999999999875444 5789999999999998876554 37
Q ss_pred cccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhh-cCC
Q 037941 114 KLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELN-QLS 192 (308)
Q Consensus 114 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~-~l~ 192 (308)
+|++|++++|.++.++. ..+++|+.|++++|. ++.++...++.+++|+.|++++|.+.+.. +..+. .++
T Consensus 100 ~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~l~~~l~ 169 (487)
T 3oja_A 100 SIETLHAANNNISRVSC--SRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVN-------FAELAASSD 169 (487)
T ss_dssp TCCEEECCSSCCCCEEE--CCCSSCEEEECCSSC-CCSGGGBCGGGGSSEEEEECTTSCCCEEE-------GGGGGGGTT
T ss_pred CcCEEECcCCcCCCCCc--cccCCCCEEECCCCC-CCCCCchhhcCCCCCCEEECCCCCCCCcC-------hHHHhhhCC
Confidence 78888888888886665 246788888888887 55554434777888888888888877432 23443 678
Q ss_pred CCCEEEeeeccCccccchhhccCCceeEeeccCccc---ccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCcc
Q 037941 193 RLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWS---WTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLN 269 (308)
Q Consensus 193 ~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~---~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 269 (308)
+|+.|++++|.++.+|.....++|+.|++..+.+.. .+..+++|+.|+|+.|.....+..+.. +++|+.|++++++
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~l~~N~ 248 (487)
T 3oja_A 170 TLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRF-SQNLEHFDLRGNG 248 (487)
T ss_dssp TCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCC-CTTCCEEECTTCC
T ss_pred cccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhcc-CCCCCEEEcCCCC
Confidence 888888888888777766656777777776665433 244567777777777765554444333 3777777777744
Q ss_pred chhhhhhccCCCCCCcccEEecc
Q 037941 270 GLQNVLHELDGEGFPRLKHLLVQ 292 (308)
Q Consensus 270 ~~~~~~~~~~~~~~~~L~~L~l~ 292 (308)
......+.+ ...++.|+.+.+.
T Consensus 249 l~c~~~~~~-~~~l~~L~~l~~~ 270 (487)
T 3oja_A 249 FHCGTLRDF-FSKNQRVQTVAKQ 270 (487)
T ss_dssp BCHHHHHHH-HTTCHHHHHHHHH
T ss_pred CcCcchHHH-HHhCCCCcEEecc
Confidence 331222212 2445556655553
No 70
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=2.1e-19 Score=163.05 Aligned_cols=197 Identities=20% Similarity=0.211 Sum_probs=134.0
Q ss_pred ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCC
Q 037941 24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL 103 (308)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~ 103 (308)
+.++..+|. ..+++++|++++|.+..+|.. .++|++|++++|.+++ ++. ..++|++|++++|.+..+| .
T Consensus 80 ~~~l~~lp~--~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~lp-~- 148 (454)
T 1jl5_A 80 NLGLSSLPE--LPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEKLP-E- 148 (454)
T ss_dssp TSCCSCCCS--CCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSSCC-C-
T ss_pred CCccccCCC--CcCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCCCc-c-
Confidence 455666664 357899999999988777753 4789999999988763 332 1268999999999988888 4
Q ss_pred CCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccC----
Q 037941 104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEG---- 179 (308)
Q Consensus 104 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---- 179 (308)
++.+++|++|++++|.++.+|..+ .+|+.|++++|. ++.+|. ++.+++|++|++++|.+.+.+..
T Consensus 149 -----~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~~~~L 217 (454)
T 1jl5_A 149 -----LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELPE--LQNLPFLTAIYADNNSLKKLPDLPLSL 217 (454)
T ss_dssp -----CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred -----cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCcc--ccCCCCCCEEECCCCcCCcCCCCcCcc
Confidence 788899999999999888877643 589999999987 667773 78888888888888887743221
Q ss_pred --------CcccchhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccccCCCCcCceEEEeecC
Q 037941 180 --------QNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDN 245 (308)
Q Consensus 180 --------~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~ 245 (308)
..... ..+..+++|+.|++++|.++.+|.. ..+|+.|++..+.+......+++|+.|+++.|.
T Consensus 218 ~~L~l~~n~l~~l-p~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 218 ESIVAGNNILEEL-PELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPELPQSLTFLDVSENI 288 (454)
T ss_dssp CEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC
T ss_pred cEEECcCCcCCcc-cccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcccCcCCEEECcCCc
Confidence 00111 1355566666666666666655543 255566655555444333334455555555543
No 71
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=3.7e-20 Score=153.88 Aligned_cols=204 Identities=11% Similarity=0.166 Sum_probs=136.9
Q ss_pred hhhHhhhhcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCC-CcCCCCchhhcCCCCccEEEccC-CCCCCCCCC
Q 037941 27 LREVFEDLMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEK-LSLVIPDLFFEGVPSLQVLSLNG-FHFPSLPST 102 (308)
Q Consensus 27 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp~~ 102 (308)
+.++|. ...++++|++++|.+..+++. + .+++|++|++++|. ++ .++...|.++++|++|++++ |.+..+|..
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 666665 566788888888888777663 3 78888888888886 54 45554457788888888887 778777654
Q ss_pred CCCcccccccccccEEeecCCcCcccchhhhCcCCCC---EEecCCCCCCCccCcchhcCCCCCc-eEEccCCccccccc
Q 037941 103 LGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLK---LLDLSTCSKLKSIRPNVISNLPRLE-ELYMGNSFTHWEVE 178 (308)
Q Consensus 103 ~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~---~L~l~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~ 178 (308)
. +..+++|++|++++|.++.+|. +..+++|+ .|++++|..++.++...+..+++|+ .|++++|.+...+.
T Consensus 100 ~-----f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~ 173 (239)
T 2xwt_C 100 A-----LKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG 173 (239)
T ss_dssp S-----EECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECT
T ss_pred H-----hCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCH
Confidence 3 7778888888888888877776 77777777 8888887237777766677778888 88888777762221
Q ss_pred CCcccchhhhhcCCCCCEEEeeecc-CccccchhhccCCceeEeeccCcccccCCC-CcCceEEEeecCchhhhhhHHHH
Q 037941 179 GQNNASLAELNQLSRLTTLEMLILD-AQVMPRELFSLGLERNKIFLGDVWSWTGKY-ETSRTLKLKLDNRMYLEHGIKML 256 (308)
Q Consensus 179 ~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~ 256 (308)
..+.. ++|+.|++++|. ++.+|... +..+ ++|+.|+++.|.....+.. .
T Consensus 174 -------~~~~~-~~L~~L~L~~n~~l~~i~~~~------------------~~~l~~~L~~L~l~~N~l~~l~~~---~ 224 (239)
T 2xwt_C 174 -------YAFNG-TKLDAVYLNKNKYLTVIDKDA------------------FGGVYSGPSLLDVSQTSVTALPSK---G 224 (239)
T ss_dssp -------TTTTT-CEEEEEECTTCTTCCEECTTT------------------TTTCSBCCSEEECTTCCCCCCCCT---T
T ss_pred -------hhcCC-CCCCEEEcCCCCCcccCCHHH------------------hhccccCCcEEECCCCccccCChh---H
Confidence 22333 677777777773 65554432 2334 5566666666554433322 2
Q ss_pred hcccceeecCCc
Q 037941 257 LRRTEDLHLDKL 268 (308)
Q Consensus 257 ~~~L~~L~l~~~ 268 (308)
|++|+.|.+.++
T Consensus 225 ~~~L~~L~l~~~ 236 (239)
T 2xwt_C 225 LEHLKELIARNT 236 (239)
T ss_dssp CTTCSEEECTTC
T ss_pred hccCceeeccCc
Confidence 467777777654
No 72
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=3e-20 Score=154.42 Aligned_cols=214 Identities=17% Similarity=0.246 Sum_probs=159.3
Q ss_pred EEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCC-CCCCCCCCCCcccccccccccEEee
Q 037941 42 ISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFH-FPSLPSTLGDVATVGVLKKLVIFSF 120 (308)
Q Consensus 42 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~~~~~~~l~~l~~L~~L~l 120 (308)
+.+.+..+..+|. -.+++++|++++|.++ .++...|.++++|++|++++|. ++.+|+.. +..+++|++|++
T Consensus 16 ~~v~c~~l~~ip~--~~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~-----f~~l~~L~~L~l 87 (239)
T 2xwt_C 16 FRVTCKDIQRIPS--LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHS-----FYNLSKVTHIEI 87 (239)
T ss_dssp TEEEECSCSSCCC--CCTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTT-----EESCTTCCEEEE
T ss_pred ceeEccCccccCC--CCCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhH-----cCCCcCCcEEEC
Confidence 3444555777887 3448999999999988 4555455789999999999997 88888753 889999999999
Q ss_pred cC-CcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCc---eEEccCC-cccccccCCcccchhhhhcCCCC
Q 037941 121 RN-SHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLE---ELYMGNS-FTHWEVEGQNNASLAELNQLSRL 194 (308)
Q Consensus 121 ~~-~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~l~~l~~L 194 (308)
++ |.++.++ ..+..+++|+.|++++|. ++.+|. +..+++|+ .|++++| .+...++ ..+..+++|
T Consensus 88 ~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~-------~~~~~l~~L 157 (239)
T 2xwt_C 88 RNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD--LTKVYSTDIFFILEITDNPYMTSIPV-------NAFQGLCNE 157 (239)
T ss_dssp EEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC--CTTCCBCCSEEEEEEESCTTCCEECT-------TTTTTTBSS
T ss_pred CCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc--cccccccccccEEECCCCcchhhcCc-------ccccchhcc
Confidence 98 8899777 457889999999999998 777886 77888888 9999999 7773322 457788999
Q ss_pred C-EEEeeeccCccccchhhccCCceeEeeccCcccccCCCCcCceEEEeecC-chhhhhhHHHHh-cccceeecCCccch
Q 037941 195 T-TLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDN-RMYLEHGIKMLL-RRTEDLHLDKLNGL 271 (308)
Q Consensus 195 ~-~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~ 271 (308)
+ .|++++|.++.+|...+. . ++|+.|+|+.|. ..........-+ ++|++|++++ +.+
T Consensus 158 ~~~L~l~~n~l~~i~~~~~~------------------~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l 217 (239)
T 2xwt_C 158 TLTLKLYNNGFTSVQGYAFN------------------G-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSV 217 (239)
T ss_dssp EEEEECCSCCCCEECTTTTT------------------T-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCC
T ss_pred eeEEEcCCCCCcccCHhhcC------------------C-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-Ccc
Confidence 9 999999987777655322 1 356666666663 333333333334 8999999998 666
Q ss_pred hhhhhccCCCCCCcccEEeccccccc
Q 037941 272 QNVLHELDGEGFPRLKHLLVQNASEI 297 (308)
Q Consensus 272 ~~~~~~~~~~~~~~L~~L~l~~c~~l 297 (308)
+.+ +...|++|+.|.+.++..+
T Consensus 218 ~~l----~~~~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 218 TAL----PSKGLEHLKELIARNTWTL 239 (239)
T ss_dssp CCC----CCTTCTTCSEEECTTC---
T ss_pred ccC----ChhHhccCceeeccCccCC
Confidence 654 3347899999999998653
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=7.1e-20 Score=167.66 Aligned_cols=214 Identities=14% Similarity=0.132 Sum_probs=171.7
Q ss_pred CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcC
Q 037941 57 ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLT 136 (308)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~ 136 (308)
.+++|++|++++|.+++..|.. +..+++|++|++++|.+...++ ++.+++|++|++++|.++.+|.. +
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~-------l~~l~~L~~L~Ls~N~l~~l~~~----~ 99 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAAD-LAPFTKLELLNLSSNVLYETLD-------LESLSTLRTLDLNNNYVQELLVG----P 99 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGG-GTTCTTCCEEECTTSCCEEEEE-------CTTCTTCCEEECCSSEEEEEEEC----T
T ss_pred cCCCccEEEeeCCcCCCCCHHH-HhCCCCCCEEEeeCCCCCCCcc-------cccCCCCCEEEecCCcCCCCCCC----C
Confidence 4559999999999998644444 5899999999999999987665 67899999999999999977753 8
Q ss_pred CCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccc-cchhh--c
Q 037941 137 RLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVM-PRELF--S 213 (308)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-p~~~~--~ 213 (308)
+|+.|++++|. +..++.. .+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.++.+ |..+. .
T Consensus 100 ~L~~L~L~~N~-l~~~~~~---~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l 168 (487)
T 3oja_A 100 SIETLHAANNN-ISRVSCS---RGQGKKNIYLANNKITMLRD-------LDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168 (487)
T ss_dssp TCCEEECCSSC-CCCEEEC---CCSSCEEEECCSSCCCSGGG-------BCGGGGSSEEEEECTTSCCCEEEGGGGGGGT
T ss_pred CcCEEECcCCc-CCCCCcc---ccCCCCEEECCCCCCCCCCc-------hhhcCCCCCCEEECCCCCCCCcChHHHhhhC
Confidence 99999999998 6666643 57899999999999884332 4677899999999999998874 44443 2
Q ss_pred cCCceeEeeccCcccc--cCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEec
Q 037941 214 LGLERNKIFLGDVWSW--TGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLV 291 (308)
Q Consensus 214 ~~L~~l~i~~~~~~~~--~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 291 (308)
++|+.|++..+.+... ...+++|+.|+|+.|.....+..+..+ ++|+.|++++ +.++.++..+ ..+++|+.|++
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l-~~L~~L~Ls~-N~l~~lp~~l--~~l~~L~~L~l 244 (487)
T 3oja_A 169 DTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSA-AGVTWISLRN-NKLVLIEKAL--RFSQNLEHFDL 244 (487)
T ss_dssp TTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGG-TTCSEEECTT-SCCCEECTTC--CCCTTCCEEEC
T ss_pred CcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCC-CCccEEEecC-CcCcccchhh--ccCCCCCEEEc
Confidence 8999999988876543 335889999999999877665665554 9999999999 6666655433 56899999999
Q ss_pred cccccc
Q 037941 292 QNASEI 297 (308)
Q Consensus 292 ~~c~~l 297 (308)
.+|+-.
T Consensus 245 ~~N~l~ 250 (487)
T 3oja_A 245 RGNGFH 250 (487)
T ss_dssp TTCCBC
T ss_pred CCCCCc
Confidence 998543
No 74
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=3.3e-19 Score=173.69 Aligned_cols=243 Identities=19% Similarity=0.139 Sum_probs=155.4
Q ss_pred CCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccc
Q 037941 36 QKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLK 113 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~ 113 (308)
.++++.|++++|.+..+++ .+ .+++|+.|++++|.+++..+.. |.++++|++|++++|.+..+++.. +..++
T Consensus 265 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~ 338 (844)
T 3j0a_A 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA-FYGLDNLQVLNLSYNLLGELYSSN-----FYGLP 338 (844)
T ss_dssp TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT-TTTCSSCCEEEEESCCCSCCCSCS-----CSSCT
T ss_pred cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH-hcCCCCCCEEECCCCCCCccCHHH-----hcCCC
Confidence 4688999999998866544 34 8899999999999887554444 478999999999999998764432 88889
Q ss_pred cccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCC------------
Q 037941 114 KLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQ------------ 180 (308)
Q Consensus 114 ~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~------------ 180 (308)
+|++|++++|.+..++. .+..+++|+.|++++|. ++.++. +++|+.|++++|.+...+...
T Consensus 339 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~-----~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~ 412 (844)
T 3j0a_A 339 KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF-----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENR 412 (844)
T ss_dssp TCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC-SCCCSS-----CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCC
T ss_pred CCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC-CCcccC-----CCCcchhccCCCCcccccccccccceeecccCc
Confidence 99999999998886654 57788899999998887 554432 455666666666554322110
Q ss_pred --cccchhhhhcCCCCCEEEeeeccCccccchhh---ccCCceeEeeccCcc---------cccCCCCcCceEEEeecCc
Q 037941 181 --NNASLAELNQLSRLTTLEMLILDAQVMPRELF---SLGLERNKIFLGDVW---------SWTGKYETSRTLKLKLDNR 246 (308)
Q Consensus 181 --~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~---~~~L~~l~i~~~~~~---------~~~~~~~~L~~L~L~~~~~ 246 (308)
.......+..+++|+.|++++|.++.++.... .++|+.|++..+.+. ..+..+++|+.|+|+.|..
T Consensus 413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 492 (844)
T 3j0a_A 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYL 492 (844)
T ss_dssp CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHH
T ss_pred cccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcc
Confidence 00112335577888888888888766544322 166777777655432 1234456666666666644
Q ss_pred hhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccc
Q 037941 247 MYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNA 294 (308)
Q Consensus 247 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 294 (308)
.........-+++|+.|++++ +.++.+++... .++|+.|++++|
T Consensus 493 ~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~---~~~L~~L~Ls~N 536 (844)
T 3j0a_A 493 NSLPPGVFSHLTALRGLSLNS-NRLTVLSHNDL---PANLEILDISRN 536 (844)
T ss_dssp TTCCTTSSSSCCSCSEEEEES-CCCSSCCCCCC---CSCCCEEEEEEE
T ss_pred cccChhHccchhhhheeECCC-CCCCccChhhh---hccccEEECCCC
Confidence 443333222236666666666 44444332211 145555555554
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.81 E-value=1.2e-19 Score=156.74 Aligned_cols=220 Identities=15% Similarity=0.145 Sum_probs=145.5
Q ss_pred CeeEEeecCCCCC--CCCcC--------CCCCccEEEecCCCCcCCCCchhh-cCCCCccEEEccCCCCCCCCCCCCCcc
Q 037941 39 PIAISHPCRDIQE--LPEKL--------ECPKLKLFFLFSEKLSLVIPDLFF-EGVPSLQVLSLNGFHFPSLPSTLGDVA 107 (308)
Q Consensus 39 l~~L~l~~~~~~~--~~~~~--------~~~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~lp~~~~~~~ 107 (308)
+++|++++|.+.. ++... .+++|++|++++|.+++.+|..++ ..+++|++|++++|.+..+|..
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----- 139 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW----- 139 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-----
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH-----
Confidence 6777777776632 33322 377888888888887776776653 6778888888888888776655
Q ss_pred ccccc-----ccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCc--cCcc-hhcCCCCCceEEccCCccccccc
Q 037941 108 TVGVL-----KKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKS--IRPN-VISNLPRLEELYMGNSFTHWEVE 178 (308)
Q Consensus 108 ~l~~l-----~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~--~~~~-~~~~l~~L~~L~l~~~~~~~~~~ 178 (308)
++.+ ++|++|++++|.++.++ ..++.+++|+.|++++|...+. ++.. .+..+++|++|++++|.+....
T Consensus 140 -~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~- 217 (312)
T 1wwl_A 140 -LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS- 217 (312)
T ss_dssp -HHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH-
T ss_pred -HHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH-
Confidence 6665 77888888888877665 6677888888888888773332 2222 1267778888888888776211
Q ss_pred CCcccch-hhhhcCCCCCEEEeeeccCccccc-hhh--ccCCceeEeeccCcccccCCC-CcCceEEEeecCchhhhhhH
Q 037941 179 GQNNASL-AELNQLSRLTTLEMLILDAQVMPR-ELF--SLGLERNKIFLGDVWSWTGKY-ETSRTLKLKLDNRMYLEHGI 253 (308)
Q Consensus 179 ~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~p~-~~~--~~~L~~l~i~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~ 253 (308)
..+ ..+..+++|+.|++++|.++..+. ..+ ..+|+.|++..+.+......+ ++|+.|+|+.|.....+. +
T Consensus 218 ----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~p~-~ 292 (312)
T 1wwl_A 218 ----GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPS-P 292 (312)
T ss_dssp ----HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSCCC-T
T ss_pred ----HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCceEEECCCCCCCCChh-H
Confidence 111 234567788888888887766442 222 267788877766654433332 588888888887665433 3
Q ss_pred HHHhcccceeecCCccchh
Q 037941 254 KMLLRRTEDLHLDKLNGLQ 272 (308)
Q Consensus 254 ~~~~~~L~~L~l~~~~~~~ 272 (308)
.. +++|++|++++ +.++
T Consensus 293 ~~-l~~L~~L~L~~-N~l~ 309 (312)
T 1wwl_A 293 DE-LPQVGNLSLKG-NPFL 309 (312)
T ss_dssp TT-SCEEEEEECTT-CTTT
T ss_pred hh-CCCCCEEeccC-CCCC
Confidence 33 48888999887 4444
No 76
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=1.3e-18 Score=145.63 Aligned_cols=157 Identities=22% Similarity=0.315 Sum_probs=104.8
Q ss_pred CCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccE
Q 037941 38 DPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI 117 (308)
Q Consensus 38 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~ 117 (308)
..++++++++.+..+|.... ++++.|++++|.+++..+.. +.++++|++|++++|.+..+++.. +..+++|++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~ 87 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDAT-FRGLTKLTWLNLDYNQLQTLSAGV-----FDDLTELGT 87 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCE
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhH-hcCcccCCEEECCCCcCCccCHhH-----hccCCcCCE
Confidence 34567777777777766553 56777777777776433333 467777777777777777665543 667777777
Q ss_pred EeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCE
Q 037941 118 FSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTT 196 (308)
Q Consensus 118 L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 196 (308)
|++++|.++.+| ..+..+++|+.|++++|. ++.++...+..+++|+.|++++|.+.+.++ ..+..+++|+.
T Consensus 88 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~ 159 (251)
T 3m19_A 88 LGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPA-------GAFDKLTNLQT 159 (251)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTTCCE
T ss_pred EECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCH-------HHcCcCcCCCE
Confidence 777777777665 345677777777777776 666666556677777777777777662222 34666777777
Q ss_pred EEeeeccCccccc
Q 037941 197 LEMLILDAQVMPR 209 (308)
Q Consensus 197 L~l~~~~~~~~p~ 209 (308)
|++++|.++.+|.
T Consensus 160 L~L~~N~l~~~~~ 172 (251)
T 3m19_A 160 LSLSTNQLQSVPH 172 (251)
T ss_dssp EECCSSCCSCCCT
T ss_pred EECCCCcCCccCH
Confidence 7777776655554
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.81 E-value=8.6e-19 Score=146.73 Aligned_cols=171 Identities=20% Similarity=0.259 Sum_probs=144.7
Q ss_pred eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC
Q 037941 21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS 98 (308)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 98 (308)
.+.+.++..+|. ...++++.|++++|.+..+++. + .+++|++|++++|.+++ ++...+..+++|++|++++|.+..
T Consensus 20 ~~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~ 97 (251)
T 3m19_A 20 DCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLAS 97 (251)
T ss_dssp ECTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECTTSCCCC
T ss_pred ecCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEECCCCcccc
Confidence 345677778874 3468999999999999877664 4 89999999999999985 444445789999999999999999
Q ss_pred CCCCCCCcccccccccccEEeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccc
Q 037941 99 LPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEV 177 (308)
Q Consensus 99 lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 177 (308)
+|... +..+++|++|++++|.++.+|.. +..+++|+.|++++|. ++.++...++.+++|++|++++|.+.+.+
T Consensus 98 ~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 98 LPLGV-----FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp CCTTT-----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cChhH-----hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 88765 88999999999999999988765 6889999999999998 77888766899999999999999988433
Q ss_pred cCCcccchhhhhcCCCCCEEEeeeccCcc
Q 037941 178 EGQNNASLAELNQLSRLTTLEMLILDAQV 206 (308)
Q Consensus 178 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 206 (308)
+ ..+..+++|+.|++++|.+.-
T Consensus 172 ~-------~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 172 H-------GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp T-------TTTTTCTTCCEEECCSCCBCT
T ss_pred H-------HHHhCCCCCCEEEeeCCceeC
Confidence 2 467889999999999997643
No 78
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=2.2e-18 Score=162.37 Aligned_cols=122 Identities=25% Similarity=0.310 Sum_probs=103.8
Q ss_pred ccchhhHhhh--hcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941 24 ISDLREVFED--LMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL 99 (308)
Q Consensus 24 ~~~~~~~~~~--~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 99 (308)
++.+..+|+. ...++|++|++++|.+..+++. + ++++|++|++++|.++ .++...|.++++|++|++++|.++.+
T Consensus 61 ~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~l~~l 139 (635)
T 4g8a_A 61 FNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASL 139 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTSCCCCS
T ss_pred CCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCCcCCCC
Confidence 4566666643 4678999999999999888765 4 8999999999999987 56766678999999999999999999
Q ss_pred CCCCCCcccccccccccEEeecCCcCc--ccchhhhCcCCCCEEecCCCCCCCcc
Q 037941 100 PSTLGDVATVGVLKKLVIFSFRNSHIE--QLPEEIGQLTRLKLLDLSTCSKLKSI 152 (308)
Q Consensus 100 p~~~~~~~~l~~l~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~ 152 (308)
|+.. ++.+++|++|++++|.++ .+|..++.+++|+.|++++|. ++.+
T Consensus 140 ~~~~-----~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 188 (635)
T 4g8a_A 140 ENFP-----IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSI 188 (635)
T ss_dssp TTCC-----CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEE
T ss_pred Chhh-----hhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccc
Confidence 8764 899999999999999987 567888999999999999987 4443
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=3.1e-19 Score=154.10 Aligned_cols=198 Identities=16% Similarity=0.104 Sum_probs=87.5
Q ss_pred CCCeeEEeecCCCC-CCCCc---CCCCCccEEEecCCCCcCCCC---chhhcCCCCccEEEccCCCCCCCCCCCCCcccc
Q 037941 37 KDPIAISHPCRDIQ-ELPEK---LECPKLKLFFLFSEKLSLVIP---DLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATV 109 (308)
Q Consensus 37 ~~l~~L~l~~~~~~-~~~~~---~~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l 109 (308)
+++++|++++|.+. ..|.. ..+++|++|++++|.+++..+ ...+..+++|++|++++|.+..+|+.. +
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~-----~ 165 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ-----V 165 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS-----C
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHH-----h
Confidence 34555555555552 22222 235555555555555443222 011124555555555555555444322 4
Q ss_pred cccccccEEeecCCcCcc---cch--hhhCcCCCCEEecCCCCCCCccCcc---hhcCCCCCceEEccCCcccccccCCc
Q 037941 110 GVLKKLVIFSFRNSHIEQ---LPE--EIGQLTRLKLLDLSTCSKLKSIRPN---VISNLPRLEELYMGNSFTHWEVEGQN 181 (308)
Q Consensus 110 ~~l~~L~~L~l~~~~i~~---l~~--~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~~ 181 (308)
+.+++|++|++++|.+.. ++. .++.+++|+.|++++|. ++.++.. .++.+++|++|++++|.+.+..+
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p--- 241 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVN--- 241 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC---
T ss_pred ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccch---
Confidence 455555555555554431 221 12345555555555554 3333321 23344555555555555442211
Q ss_pred ccchhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccccCCCCcCceEEEeecCchhhhhhHHHHhcccc
Q 037941 182 NASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTE 261 (308)
Q Consensus 182 ~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~ 261 (308)
.....+..+++|++|++++|.++.+|..+. ++|+.|+|+.|.....+. . ..+++|+
T Consensus 242 -~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---------------------~~L~~L~Ls~N~l~~~~~-~-~~l~~L~ 297 (310)
T 4glp_A 242 -PSAPRCMWSSALNSLNLSFAGLEQVPKGLP---------------------AKLRVLDLSSNRLNRAPQ-P-DELPEVD 297 (310)
T ss_dssp -SCCSSCCCCTTCCCEECCSSCCCSCCSCCC---------------------SCCSCEECCSCCCCSCCC-T-TSCCCCS
T ss_pred -hhHHhccCcCcCCEEECCCCCCCchhhhhc---------------------CCCCEEECCCCcCCCCch-h-hhCCCcc
Confidence 011111122455555555555544444332 455555555554443211 1 2236666
Q ss_pred eeecCC
Q 037941 262 DLHLDK 267 (308)
Q Consensus 262 ~L~l~~ 267 (308)
+|++++
T Consensus 298 ~L~L~~ 303 (310)
T 4glp_A 298 NLTLDG 303 (310)
T ss_dssp CEECSS
T ss_pred EEECcC
Confidence 666665
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=3.1e-18 Score=145.03 Aligned_cols=168 Identities=20% Similarity=0.280 Sum_probs=141.8
Q ss_pred ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCC
Q 037941 24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL 103 (308)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~ 103 (308)
+..+..++.....+++++|++++|.+..++....+++|++|++++|.++ .++...+..+++|++|++++|.+..+|+..
T Consensus 50 ~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 128 (272)
T 3rfs_A 50 NSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGV 128 (272)
T ss_dssp TSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHH
Confidence 3444555545668999999999999988775559999999999999988 455555689999999999999999888764
Q ss_pred CCcccccccccccEEeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcc
Q 037941 104 GDVATVGVLKKLVIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNN 182 (308)
Q Consensus 104 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 182 (308)
++.+++|++|++++|.++.++.. ++.+++|+.|++++|. ++.++...++.+++|++|++++|.+.+..+
T Consensus 129 -----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---- 198 (272)
T 3rfs_A 129 -----FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQNQLKSVPD---- 198 (272)
T ss_dssp -----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT----
T ss_pred -----hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCCCcCCccCH----
Confidence 78999999999999999977754 6899999999999998 777877767899999999999999884332
Q ss_pred cchhhhhcCCCCCEEEeeeccCc
Q 037941 183 ASLAELNQLSRLTTLEMLILDAQ 205 (308)
Q Consensus 183 ~~~~~l~~l~~L~~L~l~~~~~~ 205 (308)
..+..+++|+.|++++|.+.
T Consensus 199 ---~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 199 ---GVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp ---TTTTTCTTCCEEECCSSCBC
T ss_pred ---HHHhCCcCCCEEEccCCCcc
Confidence 45788999999999999643
No 81
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=3.7e-18 Score=147.18 Aligned_cols=182 Identities=14% Similarity=0.173 Sum_probs=154.2
Q ss_pred ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCC
Q 037941 24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL 103 (308)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~ 103 (308)
+..+..++.....+++++|++++|.+..+++...+++|++|++++|.++. ++ . +..+++|++|++++|.+..+|.
T Consensus 50 ~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~-~~-~-~~~l~~L~~L~l~~n~l~~~~~-- 124 (308)
T 1h6u_A 50 GTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN-VS-A-IAGLQSIKTLDLTSTQITDVTP-- 124 (308)
T ss_dssp TSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC-CG-G-GTTCTTCCEEECTTSCCCCCGG--
T ss_pred CCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCC-ch-h-hcCCCCCCEEECCCCCCCCchh--
Confidence 34555566556689999999999999988884499999999999999874 44 3 5789999999999999998875
Q ss_pred CCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCccc
Q 037941 104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNA 183 (308)
Q Consensus 104 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 183 (308)
+..+++|++|++++|.++.++. +..+++|+.|++++|. ++.++. +..+++|+.|++++|.+.+.
T Consensus 125 -----l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~l~~n~l~~~------- 188 (308)
T 1h6u_A 125 -----LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQ-VSDLTP--LANLSKLTTLKADDNKISDI------- 188 (308)
T ss_dssp -----GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCCC-------
T ss_pred -----hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCc-CCCChh--hcCCCCCCEEECCCCccCcC-------
Confidence 8899999999999999998887 8899999999999998 777776 78999999999999998822
Q ss_pred chhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCccc
Q 037941 184 SLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWS 228 (308)
Q Consensus 184 ~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~ 228 (308)
..+..+++|++|++++|.++.++.....++|+.|++..+.+..
T Consensus 189 --~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 189 --SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp --GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred --hhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence 2378899999999999999988864334899999988776543
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=2.7e-18 Score=146.87 Aligned_cols=170 Identities=21% Similarity=0.193 Sum_probs=138.3
Q ss_pred hcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccc
Q 037941 34 LMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLK 113 (308)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~ 113 (308)
...++++.|++++|.+..++....+++|++|++++|.+++ ++. +.++++|++|++++|.+..+|. +..++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~-------l~~l~ 112 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKDLSS-------LKDLK 112 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCGGG-------GTTCT
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCCChh-------hccCC
Confidence 3467899999999999888765589999999999999874 344 5789999999999999988765 78899
Q ss_pred cccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCC
Q 037941 114 KLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSR 193 (308)
Q Consensus 114 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~ 193 (308)
+|++|++++|.++.++ .+..+++|+.|++++|. ++.++. +..+++|++|++++|.+.+. ..+..+++
T Consensus 113 ~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~L~~L~L~~N~l~~~---------~~l~~l~~ 179 (291)
T 1h6t_A 113 KLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISDI---------VPLAGLTK 179 (291)
T ss_dssp TCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCCGG--GGGCTTCSEEECCSSCCCCC---------GGGTTCTT
T ss_pred CCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcchh--hccCCCCCEEEccCCccccc---------hhhcCCCc
Confidence 9999999999999875 48889999999999998 666643 88899999999999988822 22788999
Q ss_pred CCEEEeeeccCccccchhhccCCceeEeeccCc
Q 037941 194 LTTLEMLILDAQVMPRELFSLGLERNKIFLGDV 226 (308)
Q Consensus 194 L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~ 226 (308)
|+.|++++|.++.+|.....++|+.|++..+.+
T Consensus 180 L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 180 LQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred cCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence 999999999888876533336777777665543
No 83
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=1.2e-18 Score=152.88 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=115.7
Q ss_pred eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccE-EEccCCCCC
Q 037941 21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQV-LSLNGFHFP 97 (308)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~-L~l~~~~~~ 97 (308)
.|.+.++.++|. ..++++++|++++|.++.+|+.. ++++|++|++++|.+.+.++...|.+++++.. +.+.+|++.
T Consensus 15 ~C~~~~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~ 93 (350)
T 4ay9_X 15 LCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL 93 (350)
T ss_dssp EEESTTCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC
T ss_pred EecCCCCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc
Confidence 355678888884 45788999999999999998753 89999999999999877777777788888765 566778999
Q ss_pred CCCCCCCCcccccccccccEEeecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCC-CCceEEccCCcccc
Q 037941 98 SLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLP-RLEELYMGNSFTHW 175 (308)
Q Consensus 98 ~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~ 175 (308)
.+|+.. +..+++|++|++++|.++.+|. .+....++..+++.++..+..++...+..+. .++.|++++|.+..
T Consensus 94 ~l~~~~-----f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 94 YINPEA-----FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp EECTTS-----BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred ccCchh-----hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 887664 8899999999999999887764 3445566777777665557777765555554 57778888887764
No 84
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=2.6e-18 Score=139.58 Aligned_cols=143 Identities=23% Similarity=0.353 Sum_probs=81.4
Q ss_pred ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCC
Q 037941 24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS 101 (308)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~ 101 (308)
+.++.++| ....+++++|++++|.+..+++.. .+++|++|++++|.++ .++...+..+++|++|++++|.+..+|.
T Consensus 16 ~~~l~~~p-~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 93 (208)
T 2o6s_A 16 SQGRTSVP-TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPN 93 (208)
T ss_dssp SSCCSSCC-SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCccCCC-CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECCCCcCCccCH
Confidence 34444444 223456666666666665555432 5666666666666655 3444444556666666666666665555
Q ss_pred CCCCcccccccccccEEeecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccc
Q 037941 102 TLGDVATVGVLKKLVIFSFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTH 174 (308)
Q Consensus 102 ~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 174 (308)
.. +..+++|++|++++|.++.++.. +..+++|+.|++++|. ++.++...+..+++|+.|++++|.+.
T Consensus 94 ~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 94 GV-----FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TT-----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred hH-----hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCee
Confidence 43 45566666666666666655433 4556666666666665 44555544555666666666666544
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=1.6e-19 Score=160.56 Aligned_cols=251 Identities=15% Similarity=0.070 Sum_probs=171.5
Q ss_pred hcCCCCeeEEeecCCCCC-----CCCcC-CCCCccEEEecCCC---CcCCCCchh------hcCCCCccEEEccCCCCCC
Q 037941 34 LMQKDPIAISHPCRDIQE-----LPEKL-ECPKLKLFFLFSEK---LSLVIPDLF------FEGVPSLQVLSLNGFHFPS 98 (308)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~~---~~~~~~~~~------~~~l~~L~~L~l~~~~~~~ 98 (308)
...+++++|++++|.+.. ++..+ .+++|++|++++|. +++.+|..+ +..+++|++|++++|.+..
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 346789999999998743 23334 78999999999864 344445443 3678999999999999885
Q ss_pred -----CCCCCCCcccccccccccEEeecCCcCc-----ccchhhhCc---------CCCCEEecCCCCCCC--ccCc--c
Q 037941 99 -----LPSTLGDVATVGVLKKLVIFSFRNSHIE-----QLPEEIGQL---------TRLKLLDLSTCSKLK--SIRP--N 155 (308)
Q Consensus 99 -----lp~~~~~~~~l~~l~~L~~L~l~~~~i~-----~l~~~~~~l---------~~L~~L~l~~~~~~~--~~~~--~ 155 (308)
+|.. +..+++|++|++++|.++ .++..+..+ ++|+.|++++|. ++ .++. .
T Consensus 109 ~~~~~l~~~------l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~ 181 (386)
T 2ca6_A 109 TAQEPLIDF------LSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAK 181 (386)
T ss_dssp TTHHHHHHH------HHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHHHH
T ss_pred HHHHHHHHH------HHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHHHH
Confidence 5655 788899999999999886 233334444 899999999998 43 3332 2
Q ss_pred hhcCCCCCceEEccCCcccccccCCcccchh-hhhcCCCCCEEEeeeccC-----ccccchhhc-cCCceeEeeccCccc
Q 037941 156 VISNLPRLEELYMGNSFTHWEVEGQNNASLA-ELNQLSRLTTLEMLILDA-----QVMPRELFS-LGLERNKIFLGDVWS 228 (308)
Q Consensus 156 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~-----~~~p~~~~~-~~L~~l~i~~~~~~~ 228 (308)
.+..+++|+.|++++|.+.... ...... .+..+++|+.|++++|.+ ..+|..+.. ++|+.|++..+.+..
T Consensus 182 ~l~~~~~L~~L~L~~n~l~~~g---~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIRPEG---IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHCTTCCEEECCSSCCCHHH---HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHhCCCcCEEECcCCCCCHhH---HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 2667889999999999877211 011223 677889999999999987 456665555 888998887776543
Q ss_pred c--------c--CCCCcCceEEEeecCchh-----hhhhHHHHhcccceeecCCccchhhhhh--ccCCCCCCcccEEec
Q 037941 229 W--------T--GKYETSRTLKLKLDNRMY-----LEHGIKMLLRRTEDLHLDKLNGLQNVLH--ELDGEGFPRLKHLLV 291 (308)
Q Consensus 229 ~--------~--~~~~~L~~L~L~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l 291 (308)
. . +.+++|+.|+|+.|.... ....+..-+++|++|++++++ +....+ ......++.++.+++
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~-l~~~~~~~~~l~~~l~~~~~~~l 337 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR-FSEEDDVVDEIREVFSTRGRGEL 337 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB-SCTTSHHHHHHHHHHHHHTCCEE
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc-CCcchhHHHHHHHHhhhcCcchh
Confidence 2 2 337889999998887655 344443435889999998843 333221 111233566665555
Q ss_pred cccc
Q 037941 292 QNAS 295 (308)
Q Consensus 292 ~~c~ 295 (308)
....
T Consensus 338 ~~~d 341 (386)
T 2ca6_A 338 DELD 341 (386)
T ss_dssp CCCC
T ss_pred hhcc
Confidence 4443
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.75 E-value=9.9e-19 Score=150.94 Aligned_cols=222 Identities=11% Similarity=0.113 Sum_probs=149.9
Q ss_pred CCCCccEEEecCCCCcCCCCchh--hcCCCCccEEEccCCCCC-CCCCCCCCcccc--cccccccEEeecCCcCcc-cc-
Q 037941 57 ECPKLKLFFLFSEKLSLVIPDLF--FEGVPSLQVLSLNGFHFP-SLPSTLGDVATV--GVLKKLVIFSFRNSHIEQ-LP- 129 (308)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l--~~l~~L~~L~l~~~~i~~-l~- 129 (308)
....++.+.+.++.++......+ +..+++|++|++++|.+. ..|.. + ..+++|++|++++|.++. .+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~------~~~~~~~~L~~L~Ls~n~i~~~~~~ 135 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPL------PLEATGLALSSLRLRNVSWATGRSW 135 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCC------SSSCCCBCCSSCEEESCCCSSTTSS
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhh------hhhccCCCCCEEEeecccccchhhh
Confidence 44456777777776542111111 113566888888888887 45555 4 778888888888888773 22
Q ss_pred ---hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCcc
Q 037941 130 ---EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQV 206 (308)
Q Consensus 130 ---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 206 (308)
..+..+++|+.|++++|. +..++...++.+++|++|++++|.+.+... ......+..+++|++|++++|.++.
T Consensus 136 ~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~~~~~l~~L~~L~Ls~N~l~~ 211 (310)
T 4glp_A 136 LAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERG---LMAALCPHKFPAIQNLALRNTGMET 211 (310)
T ss_dssp HHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHH---HHTTSCTTSSCCCCSCBCCSSCCCC
T ss_pred hHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchh---hhHHHhhhcCCCCCEEECCCCCCCc
Confidence 234567888888888888 566665557788888888888887652100 0001123577888888888888876
Q ss_pred ccch---h-hc-cCCceeEeeccCcccc----cCCC---CcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhh
Q 037941 207 MPRE---L-FS-LGLERNKIFLGDVWSW----TGKY---ETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNV 274 (308)
Q Consensus 207 ~p~~---~-~~-~~L~~l~i~~~~~~~~----~~~~---~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 274 (308)
++.. + .. .+|+.|+++.+.+... ...+ ++|+.|+|+.|.....+..+ +++|++|++++ +.++.+
T Consensus 212 l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~---~~~L~~L~Ls~-N~l~~~ 287 (310)
T 4glp_A 212 PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL---PAKLRVLDLSS-NRLNRA 287 (310)
T ss_dssp HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC---CSCCSCEECCS-CCCCSC
T ss_pred hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh---cCCCCEEECCC-CcCCCC
Confidence 6653 2 12 7888888877665443 3333 69999999998776544433 48999999998 666664
Q ss_pred hhccCCCCCCcccEEeccccc
Q 037941 275 LHELDGEGFPRLKHLLVQNAS 295 (308)
Q Consensus 275 ~~~~~~~~~~~L~~L~l~~c~ 295 (308)
+. ...+++|+.|++++++
T Consensus 288 ~~---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 288 PQ---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp CC---TTSCCCCSCEECSSTT
T ss_pred ch---hhhCCCccEEECcCCC
Confidence 22 3678999999999984
No 87
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=1.9e-17 Score=136.61 Aligned_cols=148 Identities=18% Similarity=0.313 Sum_probs=80.4
Q ss_pred eEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEee
Q 037941 41 AISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSF 120 (308)
Q Consensus 41 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l 120 (308)
.++.+++.+..+|.... ++|++|++++|.+++..+.. +.++++|++|++++|.+..+|... +..+++|++|++
T Consensus 23 ~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~N~l~~i~~~~-----~~~l~~L~~L~L 95 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGV-FDSLINLKELYLGSNQLGALPVGV-----FDSLTQLTVLDL 95 (229)
T ss_dssp EEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEEC
T ss_pred EeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHH-hhCccCCcEEECCCCCCCCcChhh-----cccCCCcCEEEC
Confidence 35555555555554332 55666666666655333332 345666666666666666555543 455666666666
Q ss_pred cCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEe
Q 037941 121 RNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEM 199 (308)
Q Consensus 121 ~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 199 (308)
++|.++.++.. +..+++|+.|++++|. ++.+|.. +..+++|++|++++|.+..... ..+..+++|+.|++
T Consensus 96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRG-IERLTHLTHLALDQNQLKSIPH-------GAFDRLSSLTHAYL 166 (229)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTT-GGGCTTCSEEECCSSCCCCCCT-------TTTTTCTTCCEEEC
T ss_pred CCCcCCccChhHhCcchhhCeEeccCCc-ccccCcc-cccCCCCCEEECCCCcCCccCH-------HHHhCCCCCCEEEe
Confidence 66666555433 4555666666666655 4555554 4556666666666665552211 23455556666666
Q ss_pred eeccC
Q 037941 200 LILDA 204 (308)
Q Consensus 200 ~~~~~ 204 (308)
++|.+
T Consensus 167 ~~N~~ 171 (229)
T 3e6j_A 167 FGNPW 171 (229)
T ss_dssp TTSCB
T ss_pred eCCCc
Confidence 66553
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=2e-19 Score=159.94 Aligned_cols=246 Identities=14% Similarity=0.069 Sum_probs=168.7
Q ss_pred eecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCch---hhcCCCCccEEEccCCCCCCC----CCCCCCc-cccccccc
Q 037941 44 HPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDL---FFEGVPSLQVLSLNGFHFPSL----PSTLGDV-ATVGVLKK 114 (308)
Q Consensus 44 l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~l----p~~~~~~-~~l~~l~~ 114 (308)
+....+..++... .+++|++|++++|.++...+.. .+..+++|++|++++|.+..+ |..+..+ ..+..+++
T Consensus 16 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 16 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp CCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 3333345566655 7899999999999887543322 245799999999999876643 4431000 11267899
Q ss_pred ccEEeecCCcCcc-----cchhhhCcCCCCEEecCCCCCCCccCcch----hcCC---------CCCceEEccCCccccc
Q 037941 115 LVIFSFRNSHIEQ-----LPEEIGQLTRLKLLDLSTCSKLKSIRPNV----ISNL---------PRLEELYMGNSFTHWE 176 (308)
Q Consensus 115 L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~----~~~l---------~~L~~L~l~~~~~~~~ 176 (308)
|++|++++|.++. +|..+..+++|++|++++|. ++...... +..+ ++|++|++++|.+...
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcH
Confidence 9999999999885 77788999999999999998 44322211 3333 8999999999988621
Q ss_pred ccCCcccchhhhhcCCCCCEEEeeeccCc------cccchhhc-cCCceeEeeccCcc--------cccCCCCcCceEEE
Q 037941 177 VEGQNNASLAELNQLSRLTTLEMLILDAQ------VMPRELFS-LGLERNKIFLGDVW--------SWTGKYETSRTLKL 241 (308)
Q Consensus 177 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~------~~p~~~~~-~~L~~l~i~~~~~~--------~~~~~~~~L~~L~L 241 (308)
. .......+..+++|++|++++|.++ .+|..+.. ++|+.|++..+.+. .....+++|+.|+|
T Consensus 175 ~---~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 175 S---MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp G---HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred H---HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 1 1122356778999999999999876 23324333 88999999877762 34667889999999
Q ss_pred eecCchhh-----hhhHHH-HhcccceeecCCccchhh-----hhhccCCCCCCcccEEeccccc
Q 037941 242 KLDNRMYL-----EHGIKM-LLRRTEDLHLDKLNGLQN-----VLHELDGEGFPRLKHLLVQNAS 295 (308)
Q Consensus 242 ~~~~~~~~-----~~~~~~-~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~~~L~~L~l~~c~ 295 (308)
+.|..... ...+.. -+++|++|+++++ .++. ++..+ ...+++|+.|++++|+
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l-~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVI-DEKMPDLLFLELNGNR 314 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHH-HHHCTTCCEEECTTSB
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHH-HhcCCCceEEEccCCc
Confidence 99875543 111111 1488999999984 4444 32222 2447999999999984
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.74 E-value=1.2e-18 Score=151.92 Aligned_cols=127 Identities=17% Similarity=0.263 Sum_probs=58.0
Q ss_pred CCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCC-CCchhhcCCCCccEEEccCCCCC-CCCCCCCCcccccccc
Q 037941 37 KDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLV-IPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVLK 113 (308)
Q Consensus 37 ~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~~l~ 113 (308)
++++.+++.++.+...++.. .+++|++|++++|.++.. ++. .+.++++|++|++++|.+. ..|.. ++.++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~------l~~~~ 142 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNT------LAKNS 142 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHH------HTTCT
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHH------HhcCC
Confidence 44555555555443332222 455555555555544322 222 2244555555555555444 23333 44455
Q ss_pred cccEEeecCC-cCc--ccchhhhCcCCCCEEecCCCCCCCc--cCcchhcCCC-CCceEEccCC
Q 037941 114 KLVIFSFRNS-HIE--QLPEEIGQLTRLKLLDLSTCSKLKS--IRPNVISNLP-RLEELYMGNS 171 (308)
Q Consensus 114 ~L~~L~l~~~-~i~--~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~-~L~~L~l~~~ 171 (308)
+|++|++++| .++ .++..+..+++|+.|++++|..++. ++.. +..++ +|++|++++|
T Consensus 143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGY 205 (336)
T ss_dssp TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSC
T ss_pred CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCC
Confidence 5555555555 344 2444445555555555555511332 2221 34445 5555555555
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=2.7e-17 Score=132.48 Aligned_cols=152 Identities=16% Similarity=0.203 Sum_probs=125.2
Q ss_pred cCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC-CCCCCCCcccccccc
Q 037941 35 MQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS-LPSTLGDVATVGVLK 113 (308)
Q Consensus 35 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~~~~l~~l~ 113 (308)
..+++++|++++|.+.++|....+++|++|++++|.++ .++ . +..+++|++|++++|.+.. .|.. ++.++
T Consensus 42 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~------l~~l~ 112 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPN------LSGLT 112 (197)
T ss_dssp HHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCC------CTTCT
T ss_pred hcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChh------hcCCC
Confidence 36789999999999998885449999999999999765 332 3 4789999999999999985 5666 88999
Q ss_pred cccEEeecCCcCc-ccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCC
Q 037941 114 KLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS 192 (308)
Q Consensus 114 ~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~ 192 (308)
+|++|++++|.++ ..|..++.+++|+.|++++|..++.+|. +..+++|+.|++++|.+.+ +..+..++
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~---------~~~l~~l~ 181 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHD---------YRGIEDFP 181 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCC---------CTTGGGCS
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcC---------hHHhccCC
Confidence 9999999999998 4677899999999999999975677773 8899999999999999882 22677889
Q ss_pred CCCEEEeeeccCcc
Q 037941 193 RLTTLEMLILDAQV 206 (308)
Q Consensus 193 ~L~~L~l~~~~~~~ 206 (308)
+|+.|++++|.++.
T Consensus 182 ~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 182 KLNQLYAFSQTIGG 195 (197)
T ss_dssp SCCEEEECBC----
T ss_pred CCCEEEeeCcccCC
Confidence 99999999997643
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=2e-17 Score=154.75 Aligned_cols=171 Identities=20% Similarity=0.199 Sum_probs=141.6
Q ss_pred hhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941 33 DLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL 112 (308)
Q Consensus 33 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l 112 (308)
...++.++.|++++|.+..++....+++|+.|++++|.+.+ ++. +..+++|+.|++++|.+..+|. +..+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~l~~-------l~~l 108 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIKDLSS-------LKDL 108 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCCCTT-------STTC
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCCCChh-------hccC
Confidence 34578899999999999888865599999999999999874 343 5789999999999999998774 8899
Q ss_pred ccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCC
Q 037941 113 KKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS 192 (308)
Q Consensus 113 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~ 192 (308)
++|++|++++|.+..++. +..+++|+.|++++|. +..++. +..+++|+.|++++|.+.+. + .+..++
T Consensus 109 ~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~~--------~-~l~~l~ 175 (605)
T 1m9s_A 109 KKLKSLSLEHNGISDING-LVHLPQLESLYLGNNK-ITDITV--LSRLTKLDTLSLEDNQISDI--------V-PLAGLT 175 (605)
T ss_dssp TTCCEEECTTSCCCCCGG-GGGCTTCSEEECCSSC-CCCCGG--GGSCTTCSEEECCSSCCCCC--------G-GGTTCT
T ss_pred CCCCEEEecCCCCCCCcc-ccCCCccCEEECCCCc-cCCchh--hcccCCCCEEECcCCcCCCc--------h-hhccCC
Confidence 999999999999998765 8899999999999998 666643 88999999999999988822 2 278899
Q ss_pred CCCEEEeeeccCccccchhhccCCceeEeeccCc
Q 037941 193 RLTTLEMLILDAQVMPRELFSLGLERNKIFLGDV 226 (308)
Q Consensus 193 ~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~ 226 (308)
+|+.|++++|.+..+|.....++|+.|++..+.+
T Consensus 176 ~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 176 KLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp TCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEE
T ss_pred CCCEEECcCCCCCCChHHccCCCCCEEEccCCcC
Confidence 9999999999988886543447888887765543
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=3e-17 Score=144.08 Aligned_cols=233 Identities=15% Similarity=0.059 Sum_probs=178.1
Q ss_pred eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCC-CCCCCCCCcccccccccccE-
Q 037941 40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGDVATVGVLKKLVI- 117 (308)
Q Consensus 40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~~~~~~~l~~l~~L~~- 117 (308)
+.++-+++.++++|..+ .+++++|++++|.++ .++...|.++++|++|++++|.+. .+|... +..++++++
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~-----f~~L~~l~~~ 84 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADV-----FSNLPKLHEI 84 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTS-----BCSCTTCCEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhH-----hhcchhhhhh
Confidence 45677788889998766 468999999999998 677766789999999999999985 577764 788888776
Q ss_pred EeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCC-cccccccCCcccchhhhhcCC-CC
Q 037941 118 FSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNS-FTHWEVEGQNNASLAELNQLS-RL 194 (308)
Q Consensus 118 L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~l~~l~-~L 194 (308)
+.+.+|.++.++ ..+..+++|+.|++++|. +..+|...+....++..+++.++ .+..... ..+..+. .+
T Consensus 85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~-------~~f~~~~~~l 156 (350)
T 4ay9_X 85 RIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIER-------NSFVGLSFES 156 (350)
T ss_dssp EEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECT-------TSSTTSBSSC
T ss_pred hcccCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccc-------cchhhcchhh
Confidence 556678899775 568899999999999998 77777654566677888888664 4442221 3444443 68
Q ss_pred CEEEeeeccCccccchhhc-cCCceeEeec-cCccc----ccCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCc
Q 037941 195 TTLEMLILDAQVMPRELFS-LGLERNKIFL-GDVWS----WTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKL 268 (308)
Q Consensus 195 ~~L~l~~~~~~~~p~~~~~-~~L~~l~i~~-~~~~~----~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~ 268 (308)
+.|++++|.++.+|...+. .+|+.+.+.. +.+.. .+..+++|+.|+|+.|.....+.+. |.+|+.|.+.++
T Consensus 157 ~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~ 233 (350)
T 4ay9_X 157 VILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARST 233 (350)
T ss_dssp EEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTC
T ss_pred hhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccC
Confidence 8999999999999988766 7788887754 33222 3567889999999998766654432 588999999888
Q ss_pred cchhhhhhccCCCCCCcccEEeccc
Q 037941 269 NGLQNVLHELDGEGFPRLKHLLVQN 293 (308)
Q Consensus 269 ~~~~~~~~~~~~~~~~~L~~L~l~~ 293 (308)
+.++.++. ...+++|+.+++.+
T Consensus 234 ~~l~~lP~---l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 234 YNLKKLPT---LEKLVALMEASLTY 255 (350)
T ss_dssp TTCCCCCC---TTTCCSCCEEECSC
T ss_pred CCcCcCCC---chhCcChhhCcCCC
Confidence 88887542 36789999999865
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=7.2e-17 Score=137.98 Aligned_cols=164 Identities=20% Similarity=0.292 Sum_probs=139.7
Q ss_pred ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCC
Q 037941 24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTL 103 (308)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~ 103 (308)
+..+..++.....+++++|++++|.+..+++...+++|++|++++|.++. ++. +..+++|++|++++|.+..++.
T Consensus 55 ~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~L~~n~i~~~~~-- 129 (291)
T 1h6t_A 55 NSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD-LSS--LKDLKKLKSLSLEHNGISDING-- 129 (291)
T ss_dssp TSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-GGG--GTTCTTCCEEECTTSCCCCCGG--
T ss_pred CCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC-Chh--hccCCCCCEEECCCCcCCCChh--
Confidence 44555555556689999999999999888884499999999999999874 443 5789999999999999998754
Q ss_pred CCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCccc
Q 037941 104 GDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNA 183 (308)
Q Consensus 104 ~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 183 (308)
+..+++|++|++++|.++.+ ..+..+++|+.|++++|. ++.++. +..+++|++|++++|.+.+
T Consensus 130 -----l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L~~N~i~~-------- 192 (291)
T 1h6t_A 130 -----LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYLSKNHISD-------- 192 (291)
T ss_dssp -----GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEECCSSCCCB--------
T ss_pred -----hcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEECCCCcCCC--------
Confidence 88999999999999999988 459999999999999998 777765 7899999999999999882
Q ss_pred chhhhhcCCCCCEEEeeeccCccccch
Q 037941 184 SLAELNQLSRLTTLEMLILDAQVMPRE 210 (308)
Q Consensus 184 ~~~~l~~l~~L~~L~l~~~~~~~~p~~ 210 (308)
+..+..+++|+.|++++|.+...|..
T Consensus 193 -l~~l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 193 -LRALAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp -CGGGTTCTTCSEEEEEEEEEECCCEE
T ss_pred -ChhhccCCCCCEEECcCCcccCCccc
Confidence 23588999999999999987665543
No 94
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=5.2e-17 Score=133.14 Aligned_cols=151 Identities=13% Similarity=0.184 Sum_probs=121.7
Q ss_pred eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEe
Q 037941 40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFS 119 (308)
Q Consensus 40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~ 119 (308)
+.++++++.+..+|..+ ...+++|++++|.+++..+...|..+++|++|++++|.++.+++.. +..+++|++|+
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~-----~~~l~~L~~L~ 87 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA-----FEGASGVNEIL 87 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEE
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHH-----hCCCCCCCEEE
Confidence 47888888888888755 3456899999999886555555678999999999999999877643 88899999999
Q ss_pred ecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEE
Q 037941 120 FRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLE 198 (308)
Q Consensus 120 l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 198 (308)
+++|.++.++. .+..+++|+.|++++|. ++.++...+..+++|+.|++++|.+.+.. +..+..+++|+.|+
T Consensus 88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-------~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 88 LTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVA-------PGAFDTLHSLSTLN 159 (220)
T ss_dssp CCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBC-------TTTTTTCTTCCEEE
T ss_pred CCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEEC-------HHHhcCCCCCCEEE
Confidence 99999987664 48889999999999998 66665445888999999999999888433 25677888999999
Q ss_pred eeeccC
Q 037941 199 MLILDA 204 (308)
Q Consensus 199 l~~~~~ 204 (308)
+++|.+
T Consensus 160 L~~N~l 165 (220)
T 2v70_A 160 LLANPF 165 (220)
T ss_dssp CCSCCE
T ss_pred ecCcCC
Confidence 998864
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=5.4e-17 Score=136.72 Aligned_cols=162 Identities=17% Similarity=0.188 Sum_probs=134.8
Q ss_pred cchhhHhhhhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCC
Q 037941 25 SDLREVFEDLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLG 104 (308)
Q Consensus 25 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~ 104 (308)
..+.+++.....+++++|++++|.+..++....+++|++|++++|.+++ ++. +..+++|++|++++|.++.+|..
T Consensus 29 ~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~-~~~--l~~l~~L~~L~L~~N~l~~l~~~-- 103 (263)
T 1xeu_A 29 QSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD-LSP--LKDLTKLEELSVNRNRLKNLNGI-- 103 (263)
T ss_dssp SCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCSSCCEEECCSSCCSCCTTC--
T ss_pred CCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC-Chh--hccCCCCCEEECCCCccCCcCcc--
Confidence 3344444344578999999999999998854499999999999999884 444 57899999999999999998874
Q ss_pred CcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccc
Q 037941 105 DVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNAS 184 (308)
Q Consensus 105 ~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 184 (308)
.. ++|++|++++|.++.++. +..+++|+.|++++|. ++.++. +..+++|+.|++++|.+.+.
T Consensus 104 -----~~-~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L~~N~i~~~-------- 165 (263)
T 1xeu_A 104 -----PS-ACLSRLFLDNNELRDTDS-LIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDLHGNEITNT-------- 165 (263)
T ss_dssp -----CC-SSCCEEECCSSCCSBSGG-GTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEECTTSCCCBC--------
T ss_pred -----cc-CcccEEEccCCccCCChh-hcCcccccEEECCCCc-CCCChH--HccCCCCCEEECCCCcCcch--------
Confidence 33 999999999999998875 8999999999999998 777763 88999999999999998822
Q ss_pred hhhhhcCCCCCEEEeeeccCccccch
Q 037941 185 LAELNQLSRLTTLEMLILDAQVMPRE 210 (308)
Q Consensus 185 ~~~l~~l~~L~~L~l~~~~~~~~p~~ 210 (308)
..+..+++|+.|++++|.+...|..
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred -HHhccCCCCCEEeCCCCcccCCccc
Confidence 5678899999999999987666543
No 96
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=1.6e-18 Score=157.56 Aligned_cols=133 Identities=22% Similarity=0.274 Sum_probs=70.9
Q ss_pred cCCCCeeEEeecCCCC-----CCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCC----CccEEEccCCCCC-----CC
Q 037941 35 MQKDPIAISHPCRDIQ-----ELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVP----SLQVLSLNGFHFP-----SL 99 (308)
Q Consensus 35 ~~~~l~~L~l~~~~~~-----~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~----~L~~L~l~~~~~~-----~l 99 (308)
..+++++|++++|.+. .++... .+++|++|++++|.++...+..++..+. +|++|++++|.+. .+
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 3556677777766664 233333 5667777777766665433334444454 5777777766665 23
Q ss_pred CCCCCCcccccccccccEEeecCCcCccc-chhhh-----CcCCCCEEecCCCCCCCccC----cchhcCCCCCceEEcc
Q 037941 100 PSTLGDVATVGVLKKLVIFSFRNSHIEQL-PEEIG-----QLTRLKLLDLSTCSKLKSIR----PNVISNLPRLEELYMG 169 (308)
Q Consensus 100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~-----~l~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~ 169 (308)
|.. +..+++|++|++++|.++.. +..+. ..++|+.|++++|. ++... ...+..+++|++|+++
T Consensus 106 ~~~------l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~ 178 (461)
T 1z7x_W 106 SST------LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVS 178 (461)
T ss_dssp HHH------TTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred HHH------HccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCCCEEECc
Confidence 443 55566666666666665521 11111 13456666666665 33211 1113445566666666
Q ss_pred CCccc
Q 037941 170 NSFTH 174 (308)
Q Consensus 170 ~~~~~ 174 (308)
+|.+.
T Consensus 179 ~n~i~ 183 (461)
T 1z7x_W 179 NNDIN 183 (461)
T ss_dssp SSBCH
T ss_pred CCCcc
Confidence 65544
No 97
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=1e-17 Score=145.98 Aligned_cols=240 Identities=13% Similarity=0.097 Sum_probs=172.3
Q ss_pred CCCCeeEEeecCCCCCCCCcC-CC--CCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC--CCCCCCCccccc
Q 037941 36 QKDPIAISHPCRDIQELPEKL-EC--PKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS--LPSTLGDVATVG 110 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~~~~~~~-~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~~~~~~~l~ 110 (308)
...+++++++++.+. +... .+ ++++.+++.+|.+.+..+. + ..+++|++|++++|.+.. +|.. +.
T Consensus 46 ~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~-~~~~~L~~L~L~~~~l~~~~~~~~------~~ 115 (336)
T 2ast_B 46 ESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE-H-FSPFRVQHMDLSNSVIEVSTLHGI------LS 115 (336)
T ss_dssp STTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS-C-CCCBCCCEEECTTCEECHHHHHHH------HT
T ss_pred chhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh-h-ccCCCCCEEEccCCCcCHHHHHHH------Hh
Confidence 456889999887764 2333 45 8999999999998866554 3 478999999999998873 6665 78
Q ss_pred ccccccEEeecCCcCc-ccchhhhCcCCCCEEecCCCCCCCc--cCcchhcCCCCCceEEccCC-cccccccCCcccchh
Q 037941 111 VLKKLVIFSFRNSHIE-QLPEEIGQLTRLKLLDLSTCSKLKS--IRPNVISNLPRLEELYMGNS-FTHWEVEGQNNASLA 186 (308)
Q Consensus 111 ~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~ 186 (308)
.+++|++|++++|.++ ..+..+..+++|+.|++++|..++. ++.. +..+++|++|++++| .+.+. ....
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~------~~~~ 188 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL-LSSCSRLDELNLSWCFDFTEK------HVQV 188 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHH-HHHCTTCCEEECCCCTTCCHH------HHHH
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHH-HhcCCCCCEEcCCCCCCcChH------HHHH
Confidence 8999999999999988 6778889999999999999943553 4443 778999999999999 77621 1245
Q ss_pred hhhcCC-CCCEEEeeecc--C--ccccchhhc-cCCceeEeeccC-c----ccccCCCCcCceEEEeecCchhhhh---h
Q 037941 187 ELNQLS-RLTTLEMLILD--A--QVMPRELFS-LGLERNKIFLGD-V----WSWTGKYETSRTLKLKLDNRMYLEH---G 252 (308)
Q Consensus 187 ~l~~l~-~L~~L~l~~~~--~--~~~p~~~~~-~~L~~l~i~~~~-~----~~~~~~~~~L~~L~L~~~~~~~~~~---~ 252 (308)
.+..++ +|++|++++|. + ..+|..+.. ++|+.|++..+. + ......+++|+.|+++.|.... +. .
T Consensus 189 ~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~ 267 (336)
T 2ast_B 189 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII-PETLLE 267 (336)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC-GGGGGG
T ss_pred HHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC-HHHHHH
Confidence 678899 99999999984 3 345555443 889999987665 2 2245678899999998886332 22 2
Q ss_pred HHHHhcccceeecCCccchhhhhhccCCCCC-CcccEEeccccccccccc
Q 037941 253 IKMLLRRTEDLHLDKLNGLQNVLHELDGEGF-PRLKHLLVQNASEILYIV 301 (308)
Q Consensus 253 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~l~~i~ 301 (308)
+.. +++|++|++++| +..... ..+ ..|+.|++.+| ++..+.
T Consensus 268 l~~-~~~L~~L~l~~~--i~~~~~----~~l~~~l~~L~l~~n-~l~~~~ 309 (336)
T 2ast_B 268 LGE-IPTLKTLQVFGI--VPDGTL----QLLKEALPHLQINCS-HFTTIA 309 (336)
T ss_dssp GGG-CTTCCEEECTTS--SCTTCH----HHHHHHSTTSEESCC-CSCCTT
T ss_pred Hhc-CCCCCEEeccCc--cCHHHH----HHHHhhCcceEEecc-cCcccc
Confidence 333 589999999987 222111 111 23556666544 565544
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=1.2e-16 Score=131.76 Aligned_cols=146 Identities=23% Similarity=0.253 Sum_probs=124.4
Q ss_pred ecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-cC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC
Q 037941 22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPE-KL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL 99 (308)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l 99 (308)
+.+.++..+|. ...+++++|++++|.+..+++ .+ .+++|++|++++|.+. .++...|..+++|++|++++|.+..+
T Consensus 26 c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 26 CRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp CTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECCCCcCCcc
Confidence 34566777773 456899999999999977744 44 8999999999999986 66666668899999999999999988
Q ss_pred CCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccc
Q 037941 100 PSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHW 175 (308)
Q Consensus 100 p~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 175 (308)
|... +..+++|++|++++|.++.+|..+..+++|+.|++++|. ++.++...+..+++|+.|++++|.+..
T Consensus 104 ~~~~-----~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 104 PSAV-----FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CTTT-----TTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred ChhH-----hCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 8874 788999999999999999999889999999999999998 778887668889999999999998873
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=7.6e-17 Score=132.13 Aligned_cols=147 Identities=19% Similarity=0.286 Sum_probs=79.2
Q ss_pred eEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCC-CCCCCCcccccccccccEEe
Q 037941 41 AISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGDVATVGVLKKLVIFS 119 (308)
Q Consensus 41 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~~~~~~~l~~l~~L~~L~ 119 (308)
.++.+++.+..+|.... +++++|++++|.++ .++...|..+++|++|++++|.+..+ |.. +..+++|++|+
T Consensus 15 ~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~------~~~l~~L~~L~ 86 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDA------FQGLRSLNSLV 86 (220)
T ss_dssp EEECTTSCCSSCCSSCC-TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTT------TTTCSSCCEEE
T ss_pred EEEcCCCCcCcCCCccC-cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHH------hhCCcCCCEEE
Confidence 45555555555554332 45666666666555 23333335566666666666666544 333 55566666666
Q ss_pred ecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEE
Q 037941 120 FRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLE 198 (308)
Q Consensus 120 l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 198 (308)
+++|.++.+|.. +..+++|+.|++++|. ++.++...+..+++|+.|++++|.+.+..+ ..+..+++|+.|+
T Consensus 87 Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 87 LYGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAK-------GTFSPLRAIQTMH 158 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------TTTTTCTTCCEEE
T ss_pred CCCCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECH-------HHHhCCCCCCEEE
Confidence 666666655543 3555666666666665 444443335556666666666665552221 2344555666666
Q ss_pred eeecc
Q 037941 199 MLILD 203 (308)
Q Consensus 199 l~~~~ 203 (308)
+++|.
T Consensus 159 L~~N~ 163 (220)
T 2v9t_B 159 LAQNP 163 (220)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 66554
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=6.7e-17 Score=132.48 Aligned_cols=147 Identities=23% Similarity=0.282 Sum_probs=127.0
Q ss_pred eecccchhhHhhhhcCCCCeeEEeecCCCCCCCCc-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC
Q 037941 21 IQIISDLREVFEDLMQKDPIAISHPCRDIQELPEK-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS 98 (308)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 98 (308)
.+.+.++..+|. ...+++++|++++|.+..+++. + .+++|++|++++|.++...+..+ .++++|++|++++|.+..
T Consensus 17 ~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~ 94 (220)
T 2v9t_B 17 DCRGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYGNKITE 94 (220)
T ss_dssp ECTTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTT-TTCSSCCEEECCSSCCCC
T ss_pred EcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHh-hCCcCCCEEECCCCcCCc
Confidence 344677888884 3468999999999999888764 4 89999999999999985545554 799999999999999999
Q ss_pred CCCCCCCcccccccccccEEeecCCcCccc-chhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccc
Q 037941 99 LPSTLGDVATVGVLKKLVIFSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHW 175 (308)
Q Consensus 99 lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 175 (308)
+|... +..+++|++|++++|.++.+ |..+..+++|+.|++++|. ++.++...+..+++|+.|++++|.+..
T Consensus 95 l~~~~-----f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 95 LPKSL-----FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCTTT-----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCHhH-----ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99885 78999999999999999966 4678999999999999999 778887768899999999999998873
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=5e-16 Score=126.03 Aligned_cols=150 Identities=21% Similarity=0.312 Sum_probs=121.6
Q ss_pred eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEe
Q 037941 40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFS 119 (308)
Q Consensus 40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~ 119 (308)
+.++..++.+..+|... .+++++|++++|.++ .++...+..+++|++|++++|.+..+|... +..+++|++|+
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~ 82 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGV-----FNKLTSLTYLN 82 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTT-----TTTCTTCCEEE
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhh-----cCCCCCcCEEE
Confidence 45677777777777554 568999999999987 556655678999999999999999888764 78899999999
Q ss_pred ecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEE
Q 037941 120 FRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLE 198 (308)
Q Consensus 120 l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 198 (308)
+++|.++.+|.. +..+++|+.|++++|. ++.++...+..+++|++|++++|.+.+.++ ..+..+++|+.|+
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-------~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-------GVFDRLTSLQYIW 154 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------TTTTTCTTCCEEE
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCH-------HHhccCCCccEEE
Confidence 999999977754 6889999999999998 777777667889999999999998873322 3467788999999
Q ss_pred eeeccC
Q 037941 199 MLILDA 204 (308)
Q Consensus 199 l~~~~~ 204 (308)
+++|.+
T Consensus 155 l~~N~~ 160 (208)
T 2o6s_A 155 LHDNPW 160 (208)
T ss_dssp CCSCCB
T ss_pred ecCCCe
Confidence 998853
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.7e-17 Score=155.17 Aligned_cols=189 Identities=18% Similarity=0.222 Sum_probs=152.0
Q ss_pred CCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941 36 QKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL 115 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L 115 (308)
+..+..+.+..+.+.++.....+++|+.|++++|.+. .++. +..+++|+.|++++|.+..+|+ +..+++|
T Consensus 20 l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-------l~~l~~L 89 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-------LTNLKNL 89 (605)
T ss_dssp HHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-------GGGCTTC
T ss_pred HHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-------hccCCCC
Confidence 4445556666666666655558999999999999987 4443 4789999999999999998887 7899999
Q ss_pred cEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCC
Q 037941 116 VIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLT 195 (308)
Q Consensus 116 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~ 195 (308)
++|++++|.++.+| .+..+++|+.|++++|. +..++. +..+++|+.|++++|.+.+ +..+..+++|+
T Consensus 90 ~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l~~--l~~l~~L~~L~Ls~N~l~~---------l~~l~~l~~L~ 156 (605)
T 1m9s_A 90 GWLFLDENKIKDLS-SLKDLKKLKSLSLEHNG-ISDING--LVHLPQLESLYLGNNKITD---------ITVLSRLTKLD 156 (605)
T ss_dssp CEEECCSSCCCCCT-TSTTCTTCCEEECTTSC-CCCCGG--GGGCTTCSEEECCSSCCCC---------CGGGGSCTTCS
T ss_pred CEEECcCCCCCCCh-hhccCCCCCEEEecCCC-CCCCcc--ccCCCccCEEECCCCccCC---------chhhcccCCCC
Confidence 99999999999887 48999999999999998 677654 8899999999999999882 25788999999
Q ss_pred EEEeeeccCccccchhhccCCceeEeeccCccc--ccCCCCcCceEEEeecCch
Q 037941 196 TLEMLILDAQVMPRELFSLGLERNKIFLGDVWS--WTGKYETSRTLKLKLDNRM 247 (308)
Q Consensus 196 ~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~--~~~~~~~L~~L~L~~~~~~ 247 (308)
.|++++|.+..++.....++|+.|++..+.+.. .+..+++|+.|+|+.|...
T Consensus 157 ~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 157 TLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEE
T ss_pred EEECcCCcCCCchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCc
Confidence 999999998888763333888888887766543 3556778888888776544
No 103
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=6.3e-17 Score=142.58 Aligned_cols=143 Identities=21% Similarity=0.298 Sum_probs=67.3
Q ss_pred ccchhhHhhhhcCCCCeeEEeecCCCCCCCCcC---CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCC
Q 037941 24 ISDLREVFEDLMQKDPIAISHPCRDIQELPEKL---ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP 100 (308)
Q Consensus 24 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp 100 (308)
+.++..+|. .....+++|++++|.+..++... .+++|++|++++|.++. ++...|.++++|++|++++|.+..+|
T Consensus 27 ~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~ 104 (361)
T 2xot_A 27 KQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLHTLD 104 (361)
T ss_dssp SSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-cChhhccCCCCCCEEECCCCcCCcCC
Confidence 344444442 23344555555555554443322 44555555555555442 22222345555555555555555444
Q ss_pred CCCCCcccccccccccEEeecCCcCccc-chhhhCcCCCCEEecCCCCCCCccCcchh---cCCCCCceEEccCCccc
Q 037941 101 STLGDVATVGVLKKLVIFSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVI---SNLPRLEELYMGNSFTH 174 (308)
Q Consensus 101 ~~~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~ 174 (308)
... +..+++|++|++++|.++.+ |..+..+++|+.|++++|. ++.+|...+ ..+++|+.|++++|.+.
T Consensus 105 ~~~-----~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 105 EFL-----FSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp TTT-----TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred HHH-----hCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 432 44555555555555555533 3344555555555555554 444444433 33455555555555544
No 104
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=3.7e-17 Score=144.14 Aligned_cols=231 Identities=10% Similarity=0.111 Sum_probs=157.5
Q ss_pred hcCCCCeeEEeecCCCCCCCC-----cC-CCC-CccEEEecCCCCcCCCCchhhcCC-----CCccEEEccCCCCCCCCC
Q 037941 34 LMQKDPIAISHPCRDIQELPE-----KL-ECP-KLKLFFLFSEKLSLVIPDLFFEGV-----PSLQVLSLNGFHFPSLPS 101 (308)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~~~~-----~~-~~~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~lp~ 101 (308)
...+++++|++++|.+...+. .+ .++ +|++|++++|.++...+..+ ..+ ++|++|++++|.++..+.
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l-~~~l~~~~~~L~~L~Ls~n~l~~~~~ 97 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL-VQILAAIPANVTSLNLSGNFLSYKSS 97 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH-HHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH-HHHHhccCCCccEEECcCCcCChHHH
Confidence 345669999999999977663 33 787 89999999999886555444 233 899999999999885443
Q ss_pred CCCCc-cccccc-ccccEEeecCCcCcccch-h----hhC-cCCCCEEecCCCCCCCcc-----CcchhcCCC-CCceEE
Q 037941 102 TLGDV-ATVGVL-KKLVIFSFRNSHIEQLPE-E----IGQ-LTRLKLLDLSTCSKLKSI-----RPNVISNLP-RLEELY 167 (308)
Q Consensus 102 ~~~~~-~~l~~l-~~L~~L~l~~~~i~~l~~-~----~~~-l~~L~~L~l~~~~~~~~~-----~~~~~~~l~-~L~~L~ 167 (308)
.. + ..+..+ ++|++|++++|.++..+. . +.. .++|+.|++++|. ++.. +.. +..++ +|++|+
T Consensus 98 ~~--l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~-l~~~~~~L~~L~ 173 (362)
T 3goz_A 98 DE--LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQI-LAAIPANVNSLN 173 (362)
T ss_dssp HH--HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHH-HHTSCTTCCEEE
T ss_pred HH--HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHH-HhcCCccccEee
Confidence 21 0 002333 799999999999885543 3 334 3699999999998 5532 222 34555 999999
Q ss_pred ccCCcccccccCCcccchhhhhcC-CCCCEEEeeeccCcc-----ccchhhc--cCCceeEeeccCccc--------ccC
Q 037941 168 MGNSFTHWEVEGQNNASLAELNQL-SRLTTLEMLILDAQV-----MPRELFS--LGLERNKIFLGDVWS--------WTG 231 (308)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~-----~p~~~~~--~~L~~l~i~~~~~~~--------~~~ 231 (308)
+++|.+.+... ......+..+ ++|++|++++|.++. ++..+.. .+|+.|++..+.+.. ...
T Consensus 174 Ls~n~l~~~~~---~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~ 250 (362)
T 3goz_A 174 LRGNNLASKNC---AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKD 250 (362)
T ss_dssp CTTSCGGGSCH---HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTT
T ss_pred ecCCCCchhhH---HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHh
Confidence 99999873322 1222345566 599999999999877 5665554 589999988776544 246
Q ss_pred CCCcCceEEEeecCchhh----hhhHHH---HhcccceeecCCccchhh
Q 037941 232 KYETSRTLKLKLDNRMYL----EHGIKM---LLRRTEDLHLDKLNGLQN 273 (308)
Q Consensus 232 ~~~~L~~L~L~~~~~~~~----~~~~~~---~~~~L~~L~l~~~~~~~~ 273 (308)
.++.|+.|+|+.|..... ...+.. .+++|+.|++++ +.+..
T Consensus 251 ~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~-N~l~~ 298 (362)
T 3goz_A 251 SLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG-KEIHP 298 (362)
T ss_dssp TTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS-CBCCG
T ss_pred cCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC-CcCCC
Confidence 678899999988862211 111111 136677888877 44443
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=2.6e-17 Score=138.60 Aligned_cols=169 Identities=16% Similarity=0.095 Sum_probs=130.1
Q ss_pred hhcCCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941 33 DLMQKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL 112 (308)
Q Consensus 33 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l 112 (308)
.....++..+++..+.+.+++....+++|++|++++|.++ .++ . +..+++|++|++++|.+..+|+ +..+
T Consensus 15 d~~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~-------l~~l 84 (263)
T 1xeu_A 15 DPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP-------LKDL 84 (263)
T ss_dssp SHHHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG-------GTTC
T ss_pred CHHHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh-------hccC
Confidence 3345667778888888888774448999999999999887 455 2 4688999999999999988876 6788
Q ss_pred ccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCC
Q 037941 113 KKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLS 192 (308)
Q Consensus 113 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~ 192 (308)
++|++|++++|.++.+|.... ++|+.|++++|. ++.++. +..+++|+.|++++|.+.+ ...+..++
T Consensus 85 ~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~Ls~N~i~~---------~~~l~~l~ 150 (263)
T 1xeu_A 85 TKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTDS--LIHLKNLEILSIRNNKLKS---------IVMLGFLS 150 (263)
T ss_dssp SSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSC-CSBSGG--GTTCTTCCEEECTTSCCCB---------CGGGGGCT
T ss_pred CCCCEEECCCCccCCcCcccc--CcccEEEccCCc-cCCChh--hcCcccccEEECCCCcCCC---------ChHHccCC
Confidence 999999999999988876333 889999999998 677764 7889999999999998882 23677889
Q ss_pred CCCEEEeeeccCccccchhhccCCceeEeeccC
Q 037941 193 RLTTLEMLILDAQVMPRELFSLGLERNKIFLGD 225 (308)
Q Consensus 193 ~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~ 225 (308)
+|+.|++++|.++.++.....++|+.|++..+.
T Consensus 151 ~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 151 KLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEE
T ss_pred CCCEEECCCCcCcchHHhccCCCCCEEeCCCCc
Confidence 999999999987766222222555665555443
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=8.7e-16 Score=142.34 Aligned_cols=177 Identities=17% Similarity=0.160 Sum_probs=142.7
Q ss_pred CCCCeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941 36 QKDPIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL 115 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L 115 (308)
..+++.|++++|.+..+|... +++|++|++++|.++ .+| ..+++|++|++++|.++.+|. + .. +|
T Consensus 58 ~~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l------~~--~L 122 (571)
T 3cvr_A 58 INQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-L------PA--SL 122 (571)
T ss_dssp HTTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-C------CT--TC
T ss_pred cCCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-h------hc--CC
Confidence 358999999999998888766 489999999999988 677 357999999999999999888 4 22 89
Q ss_pred cEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCC
Q 037941 116 VIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLT 195 (308)
Q Consensus 116 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~ 195 (308)
++|++++|.++.+|. .+++|+.|++++|. ++.+|. .+++|+.|++++|.+.+. +. +. ++|+
T Consensus 123 ~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~L~~l--------p~-l~--~~L~ 183 (571)
T 3cvr_A 123 KHLDVDNNQLTMLPE---LPALLEYINADNNQ-LTMLPE----LPTSLEVLSVRNNQLTFL--------PE-LP--ESLE 183 (571)
T ss_dssp CEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCC--------CC-CC--TTCC
T ss_pred CEEECCCCcCCCCCC---cCccccEEeCCCCc-cCcCCC----cCCCcCEEECCCCCCCCc--------ch-hh--CCCC
Confidence 999999999999888 68999999999998 777876 478999999999998832 22 33 8999
Q ss_pred EEEeeeccCccccchhhccCC-------ceeEeeccCcc---cccCCCCcCceEEEeecCchh
Q 037941 196 TLEMLILDAQVMPRELFSLGL-------ERNKIFLGDVW---SWTGKYETSRTLKLKLDNRMY 248 (308)
Q Consensus 196 ~L~l~~~~~~~~p~~~~~~~L-------~~l~i~~~~~~---~~~~~~~~L~~L~L~~~~~~~ 248 (308)
.|++++|.++.+|. +. .+| +.|++..+.+. .....+++|+.|+|+.|....
T Consensus 184 ~L~Ls~N~L~~lp~-~~-~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 184 ALDVSTNLLESLPA-VP-VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp EEECCSSCCSSCCC-CC---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred EEECcCCCCCchhh-HH-HhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence 99999999999988 43 367 88887766543 334457788888888876544
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=2.5e-16 Score=138.73 Aligned_cols=174 Identities=17% Similarity=0.201 Sum_probs=135.4
Q ss_pred eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhc-CCCCccEEEccCCCCCCCCCCCCCcccccccccccEE
Q 037941 40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFE-GVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIF 118 (308)
Q Consensus 40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L 118 (308)
+.++.+++.+..+|... .+.++.|++++|.++. ++...+. .+++|++|++++|.+..+++.. +..+++|++|
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~-----~~~l~~L~~L 93 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEA-----FVPVPNLRYL 93 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEE
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccChhh-----ccCCCCCCEE
Confidence 57889999998888755 3468999999999884 4455455 8999999999999999887654 8999999999
Q ss_pred eecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEE
Q 037941 119 SFRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTL 197 (308)
Q Consensus 119 ~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L 197 (308)
++++|.++.++. .+..+++|+.|++++|. +..++...+..+++|+.|++++|.+...+. .....+..+++|+.|
T Consensus 94 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~----~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 94 DLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPV----ELIKDGNKLPKLMLL 168 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCG----GGTC----CTTCCEE
T ss_pred ECCCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCH----HHhcCcccCCcCCEE
Confidence 999999997765 58899999999999999 677765568999999999999999884332 111222678999999
Q ss_pred EeeeccCccccchhhc--cC--CceeEeeccC
Q 037941 198 EMLILDAQVMPRELFS--LG--LERNKIFLGD 225 (308)
Q Consensus 198 ~l~~~~~~~~p~~~~~--~~--L~~l~i~~~~ 225 (308)
++++|.++.+|..... +. ++.+++..+.
T Consensus 169 ~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ECCSSCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred ECCCCCCCccCHHHhhhccHhhcceEEecCCC
Confidence 9999999988865432 22 3555555443
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.67 E-value=2.8e-16 Score=128.71 Aligned_cols=147 Identities=16% Similarity=0.231 Sum_probs=123.9
Q ss_pred ecccchhhHhhhhcCCCCeeEEeecCCCCCCCC-c-C-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC
Q 037941 22 QIISDLREVFEDLMQKDPIAISHPCRDIQELPE-K-L-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS 98 (308)
Q Consensus 22 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 98 (308)
+.+..+..+|. .....+++|++++|.+..+++ . + .+++|++|++++|.++. ++...|.++++|++|++++|.+..
T Consensus 18 ~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~l~~ 95 (220)
T 2v70_A 18 CSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTSNRLEN 95 (220)
T ss_dssp CCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCC
T ss_pred eCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCE-ECHHHhCCCCCCCEEECCCCccCc
Confidence 44567777774 456788999999999987743 2 4 89999999999999884 444445899999999999999998
Q ss_pred CCCCCCCcccccccccccEEeecCCcCccc-chhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccc
Q 037941 99 LPSTLGDVATVGVLKKLVIFSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWE 176 (308)
Q Consensus 99 lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 176 (308)
+|+.. +..+++|++|++++|.++.+ |..+..+++|+.|++++|. ++.++...+..+++|+.|++++|.+...
T Consensus 96 ~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 96 VQHKM-----FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCGGG-----GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred cCHhH-----hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 88765 88999999999999999966 5779999999999999998 6667555589999999999999998843
No 109
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=3.5e-17 Score=144.27 Aligned_cols=242 Identities=12% Similarity=0.035 Sum_probs=129.5
Q ss_pred EEeecCCCCCC-CCcC-CCCCccEEEecCCCCcCCCCc---hhhcCCC-CccEEEccCCCCCCC-CCCCCCccccccc--
Q 037941 42 ISHPCRDIQEL-PEKL-ECPKLKLFFLFSEKLSLVIPD---LFFEGVP-SLQVLSLNGFHFPSL-PSTLGDVATVGVL-- 112 (308)
Q Consensus 42 L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~~~---~~~~~l~-~L~~L~l~~~~~~~l-p~~~~~~~~l~~l-- 112 (308)
..++.+.+... |... ..++|++|++++|.++...+. ..+.+++ +|++|++++|.++.. +.. +..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~------l~~~l~ 76 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE------LVQILA 76 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH------HHHHHH
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH------HHHHHh
Confidence 34555555432 3333 334477777777776633321 2335666 677777777777643 222 4443
Q ss_pred ---ccccEEeecCCcCcccc-hh----hhCc-CCCCEEecCCCCCCCccCcchh----cC-CCCCceEEccCCccccccc
Q 037941 113 ---KKLVIFSFRNSHIEQLP-EE----IGQL-TRLKLLDLSTCSKLKSIRPNVI----SN-LPRLEELYMGNSFTHWEVE 178 (308)
Q Consensus 113 ---~~L~~L~l~~~~i~~l~-~~----~~~l-~~L~~L~l~~~~~~~~~~~~~~----~~-l~~L~~L~l~~~~~~~~~~ 178 (308)
++|++|++++|.++..+ .. +..+ ++|+.|++++|. ++..+...+ .. .++|++|++++|.+.+...
T Consensus 77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 155 (362)
T 3goz_A 77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSS 155 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCH
T ss_pred ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHH
Confidence 67777777777776333 22 3344 677777777777 555554322 22 3577777777777662211
Q ss_pred CCcccchhhhhcCC-CCCEEEeeeccCccccch-h----hc--cCCceeEeeccCcccc--------cCC-CCcCceEEE
Q 037941 179 GQNNASLAELNQLS-RLTTLEMLILDAQVMPRE-L----FS--LGLERNKIFLGDVWSW--------TGK-YETSRTLKL 241 (308)
Q Consensus 179 ~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~p~~-~----~~--~~L~~l~i~~~~~~~~--------~~~-~~~L~~L~L 241 (308)
......+..++ +|++|++++|.++..... + .. .+|+.|++..+.+... ... .++|+.|+|
T Consensus 156 ---~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L 232 (362)
T 3goz_A 156 ---DELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL 232 (362)
T ss_dssp ---HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred ---HHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence 12223444554 777777777776544431 1 11 3677777766654441 112 246777777
Q ss_pred eecCchhhh-hhHH---HHhcccceeecCCcc--c-----hhhhhhccCCCCCCcccEEeccccc
Q 037941 242 KLDNRMYLE-HGIK---MLLRRTEDLHLDKLN--G-----LQNVLHELDGEGFPRLKHLLVQNAS 295 (308)
Q Consensus 242 ~~~~~~~~~-~~~~---~~~~~L~~L~l~~~~--~-----~~~~~~~~~~~~~~~L~~L~l~~c~ 295 (308)
+.|...... ..+. ..+++|++|+++++. . +..+... ...+++|+.|++++++
T Consensus 233 s~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~--~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 233 CLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAA--FPNIQKIILVDKNGKE 295 (362)
T ss_dssp CSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTT--STTCCEEEEECTTSCB
T ss_pred cCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHH--hccCCceEEEecCCCc
Confidence 776543321 1111 123667777777643 0 1111111 1345667777777663
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=5.7e-16 Score=121.34 Aligned_cols=139 Identities=24% Similarity=0.173 Sum_probs=75.2
Q ss_pred CCccEEEecCCCCc-CCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcc-cchhhhCcC
Q 037941 59 PKLKLFFLFSEKLS-LVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQ-LPEEIGQLT 136 (308)
Q Consensus 59 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~-l~~~~~~l~ 136 (308)
+++++|++++|.++ +.+|.. +..+++|++|++++|.+..+ .. +..+++|++|++++|.++. +|..+..++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SN------LPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SS------CCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hh------hccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 34555555555544 333433 24555566666666655554 33 5556666666666666654 555555566
Q ss_pred CCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccch
Q 037941 137 RLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRE 210 (308)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~ 210 (308)
+|+.|++++|. ++.++. ..+..+++|++|++++|.+.+.+. .....+..+++|+.|++++|...++|..
T Consensus 96 ~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 96 NLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLND----YRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp TCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTT----HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred CCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHH----HHHHHHHhCccCcEecCCCCChhhcccc
Confidence 66666666665 444442 225566666666666666552111 0012455666666666666666555543
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=1.3e-15 Score=141.10 Aligned_cols=180 Identities=19% Similarity=0.148 Sum_probs=145.8
Q ss_pred CCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCC
Q 037941 59 PKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRL 138 (308)
Q Consensus 59 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L 138 (308)
.+++.|++++|.+++ +|..+ +++|++|++++|.++.+| . + +++|++|++++|.++.+|. +.. +|
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~~ip-~------~--l~~L~~L~Ls~N~l~~ip~-l~~--~L 122 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALISLP-E------L--PASLEYLDACDNRLSTLPE-LPA--SL 122 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCSCCC-C------C--CTTCCEEECCSSCCSCCCC-CCT--TC
T ss_pred CCccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCcccc-c------c--cCCCCEEEccCCCCCCcch-hhc--CC
Confidence 389999999999884 77755 378999999999999999 5 2 6899999999999999988 655 99
Q ss_pred CEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhccCCce
Q 037941 139 KLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLER 218 (308)
Q Consensus 139 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~ 218 (308)
+.|++++|. ++.+|. .+++|+.|++++|.+.+.+ . .+++|+.|++++|.++.+|. +. .+|+.
T Consensus 123 ~~L~Ls~N~-l~~lp~----~l~~L~~L~Ls~N~l~~lp--------~---~l~~L~~L~Ls~N~L~~lp~-l~-~~L~~ 184 (571)
T 3cvr_A 123 KHLDVDNNQ-LTMLPE----LPALLEYINADNNQLTMLP--------E---LPTSLEVLSVRNNQLTFLPE-LP-ESLEA 184 (571)
T ss_dssp CEEECCSSC-CSCCCC----CCTTCCEEECCSSCCSCCC--------C---CCTTCCEEECCSSCCSCCCC-CC-TTCCE
T ss_pred CEEECCCCc-CCCCCC----cCccccEEeCCCCccCcCC--------C---cCCCcCEEECCCCCCCCcch-hh-CCCCE
Confidence 999999998 777886 5799999999999988321 1 57899999999999999998 44 99999
Q ss_pred eEeeccCcccccCCCCcC-------ceEEEeecCchhhhhhHHHHhcccceeecCCccchhh
Q 037941 219 NKIFLGDVWSWTGKYETS-------RTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQN 273 (308)
Q Consensus 219 l~i~~~~~~~~~~~~~~L-------~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 273 (308)
|++..+.+..+..-..+| +.|+|+.|.....+..+.. +++|+.|++++++....
T Consensus 185 L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~-l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 185 LDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILS-LDPTCTIILEDNPLSSR 245 (571)
T ss_dssp EECCSSCCSSCCCCC--------CCEEEECCSSCCCCCCGGGGG-SCTTEEEECCSSSCCHH
T ss_pred EECcCCCCCchhhHHHhhhcccccceEEecCCCcceecCHHHhc-CCCCCEEEeeCCcCCCc
Confidence 999888765543311266 8999999987777776766 59999999998544333
No 112
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=7.2e-18 Score=153.22 Aligned_cols=248 Identities=13% Similarity=0.020 Sum_probs=155.7
Q ss_pred hcCCCCeeEEeecCCCCCC-----CCc-C-CCCCccEEEecCCCCcCCCC---chhhcCCCCccEEEccCCCCCCC-CCC
Q 037941 34 LMQKDPIAISHPCRDIQEL-----PEK-L-ECPKLKLFFLFSEKLSLVIP---DLFFEGVPSLQVLSLNGFHFPSL-PST 102 (308)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~~-----~~~-~-~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~l-p~~ 102 (308)
...+++++|++++|.+... ... . ..++|++|++++|.++.... ...+..+++|++|++++|.+... +..
T Consensus 110 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 189 (461)
T 1z7x_W 110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV 189 (461)
T ss_dssp TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHH
T ss_pred ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHH
Confidence 4577899999999887321 111 1 35679999999988775322 12235678999999998887632 111
Q ss_pred CCCccccc-----ccccccEEeecCCcCcc-----cchhhhCcCCCCEEecCCCCCCCccC-----cchhcCCCCCceEE
Q 037941 103 LGDVATVG-----VLKKLVIFSFRNSHIEQ-----LPEEIGQLTRLKLLDLSTCSKLKSIR-----PNVISNLPRLEELY 167 (308)
Q Consensus 103 ~~~~~~l~-----~l~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~~l~~L~~L~ 167 (308)
+. ..++|++|++++|.++. ++..+..+++|+.|++++|. ++... ......+++|++|+
T Consensus 190 ------l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~ 262 (461)
T 1z7x_W 190 ------LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLW 262 (461)
T ss_dssp ------HHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ------HHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEE
Confidence 21 24588888888888774 56677788888888888886 44321 22233578888888
Q ss_pred ccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCcccc-----chhhc--cCCceeEeeccCccc--------ccCC
Q 037941 168 MGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMP-----RELFS--LGLERNKIFLGDVWS--------WTGK 232 (308)
Q Consensus 168 l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p-----~~~~~--~~L~~l~i~~~~~~~--------~~~~ 232 (308)
+++|.+..... ...+..+..+++|++|++++|.++... ..+.. ++|+.|++..+.+.. +...
T Consensus 263 L~~n~l~~~~~---~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 339 (461)
T 1z7x_W 263 IWECGITAKGC---GDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ 339 (461)
T ss_dssp CTTSCCCHHHH---HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred CcCCCCCHHHH---HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence 88887772211 113455667888888888888764322 21111 478888776665432 2345
Q ss_pred CCcCceEEEeecCchhh-hhhHHHH----hcccceeecCCccchhh-----hhhccCCCCCCcccEEecccc
Q 037941 233 YETSRTLKLKLDNRMYL-EHGIKML----LRRTEDLHLDKLNGLQN-----VLHELDGEGFPRLKHLLVQNA 294 (308)
Q Consensus 233 ~~~L~~L~L~~~~~~~~-~~~~~~~----~~~L~~L~l~~~~~~~~-----~~~~~~~~~~~~L~~L~l~~c 294 (308)
+++|+.|+|+.|..... ...+... .++|++|++++| .++. ++..+ ..+++|++|++++|
T Consensus 340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l--~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATL--LANHSLRELDLSNN 408 (461)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHH--HHCCCCCEEECCSS
T ss_pred CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHH--HhCCCccEEECCCC
Confidence 57888888887754332 1112111 257888888875 3332 22222 33677888888777
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.66 E-value=6.7e-16 Score=124.27 Aligned_cols=147 Identities=18% Similarity=0.196 Sum_probs=106.8
Q ss_pred CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCc-ccchhhhCc
Q 037941 57 ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIE-QLPEEIGQL 135 (308)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~-~l~~~~~~l 135 (308)
.+++|++|++++|.++ .++ . +..+++|++|++++|.+..++. +..+++|++|++++|.++ ..+..++.+
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~~~-------l~~l~~L~~L~l~~n~l~~~~~~~l~~l 111 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNYNP-------ISGLSNLERLRIMGKDVTSDKIPNLSGL 111 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCCGG-------GTTCTTCCEEEEECTTCBGGGSCCCTTC
T ss_pred hcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcchh-------hhcCCCCCEEEeECCccCcccChhhcCC
Confidence 6788888999888877 555 2 4678889999998887766653 778888999999888888 466778888
Q ss_pred CCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCc-ccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhcc
Q 037941 136 TRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSF-THWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSL 214 (308)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~ 214 (308)
++|+.|++++|......+.. ++.+++|++|++++|. +. . +..+..+++|+.|++++|.++.++.....+
T Consensus 112 ~~L~~L~Ls~n~i~~~~~~~-l~~l~~L~~L~L~~n~~i~--------~-~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~ 181 (197)
T 4ezg_A 112 TSLTLLDISHSAHDDSILTK-INTLPKVNSIDLSYNGAIT--------D-IMPLKTLPELKSLNIQFDGVHDYRGIEDFP 181 (197)
T ss_dssp TTCCEEECCSSBCBGGGHHH-HTTCSSCCEEECCSCTBCC--------C-CGGGGGCSSCCEEECTTBCCCCCTTGGGCS
T ss_pred CCCCEEEecCCccCcHhHHH-HhhCCCCCEEEccCCCCcc--------c-cHhhcCCCCCCEEECCCCCCcChHHhccCC
Confidence 88899998888833334444 7888888888888887 55 1 235778888888888888776665222224
Q ss_pred CCceeEeec
Q 037941 215 GLERNKIFL 223 (308)
Q Consensus 215 ~L~~l~i~~ 223 (308)
+|+.|++..
T Consensus 182 ~L~~L~l~~ 190 (197)
T 4ezg_A 182 KLNQLYAFS 190 (197)
T ss_dssp SCCEEEECB
T ss_pred CCCEEEeeC
Confidence 444444433
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=7.5e-16 Score=120.68 Aligned_cols=134 Identities=19% Similarity=0.189 Sum_probs=116.1
Q ss_pred hcCCCCeeEEeecCCCC--CCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC-CCCCCCCcccc
Q 037941 34 LMQKDPIAISHPCRDIQ--ELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS-LPSTLGDVATV 109 (308)
Q Consensus 34 ~~~~~l~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~~~~l 109 (308)
..++++++|++++|.+. .+|..+ .+++|++|++++|.++.. ..+..+++|++|++++|.+.. +|.. +
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~------~ 91 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDML------A 91 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHH------H
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHH------H
Confidence 34688999999999997 888887 999999999999998754 335789999999999999997 5554 6
Q ss_pred cccccccEEeecCCcCcccc--hhhhCcCCCCEEecCCCCCCCccCc---chhcCCCCCceEEccCCcccccc
Q 037941 110 GVLKKLVIFSFRNSHIEQLP--EEIGQLTRLKLLDLSTCSKLKSIRP---NVISNLPRLEELYMGNSFTHWEV 177 (308)
Q Consensus 110 ~~l~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~ 177 (308)
..+++|++|++++|.++.+| ..+..+++|+.|++++|. +..+|. ..+..+++|+.|++++|.+...+
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 77999999999999999876 679999999999999998 777776 45889999999999999877443
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=1.1e-14 Score=116.67 Aligned_cols=129 Identities=16% Similarity=0.274 Sum_probs=99.8
Q ss_pred eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEe
Q 037941 40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFS 119 (308)
Q Consensus 40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~ 119 (308)
+.++++++.+.++|.... .++++|++++|.+++..+..++..+++|++|++++|.++.+++.. +..+++|++|+
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-----FEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-----TTTCTTCCEEE
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhH-----cCCcccCCEEE
Confidence 578888888888887552 388899999988875444444578899999999999988774432 88888999999
Q ss_pred ecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccc
Q 037941 120 FRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHW 175 (308)
Q Consensus 120 l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 175 (308)
+++|.++.++. .+..+++|+.|++++|. ++.++...+..+++|++|++++|.+.+
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 99998886654 47788889999999888 555544447888888889888888773
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=9e-16 Score=146.79 Aligned_cols=152 Identities=18% Similarity=0.195 Sum_probs=75.8
Q ss_pred CCCeeEEeecCCCCCCCCcC-CCCCccEEEecC-----CCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccc
Q 037941 37 KDPIAISHPCRDIQELPEKL-ECPKLKLFFLFS-----EKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVG 110 (308)
Q Consensus 37 ~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~-----~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~ 110 (308)
+.++.|.+..+.+...+... ...+|+.+.+.. |.+. ++...+..+..|++|+|++|.+..+|.. +.
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~n~l~~l~~~------~~ 244 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSNLQIFNISAN------IF 244 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGG------GG
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCCCCCCCCChh------hc
Confidence 44666777666665544433 333333333322 2222 2333345677777777777777777766 55
Q ss_pred ccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhc
Q 037941 111 VLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQ 190 (308)
Q Consensus 111 ~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 190 (308)
.+++|++|+|++|.++.+|..++.+++|+.|++++|. ++.+|.. ++.+++|+.|++++|.+. ..+..+..
T Consensus 245 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~--------~lp~~~~~ 314 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAE-LGSCFQLKYFYFFDNMVT--------TLPWEFGN 314 (727)
T ss_dssp GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSS-GGGGTTCSEEECCSSCCC--------CCCSSTTS
T ss_pred CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChh-hcCCCCCCEEECCCCCCC--------ccChhhhc
Confidence 6777777777777777777767777777777777776 5566665 667777777777777665 23345667
Q ss_pred CCCCCEEEeeeccCcc
Q 037941 191 LSRLTTLEMLILDAQV 206 (308)
Q Consensus 191 l~~L~~L~l~~~~~~~ 206 (308)
+++|+.|++++|.+..
T Consensus 315 l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 315 LCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CTTCCCEECTTSCCCS
T ss_pred CCCccEEeCCCCccCC
Confidence 7777777777776654
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=2e-15 Score=115.78 Aligned_cols=129 Identities=19% Similarity=0.183 Sum_probs=69.6
Q ss_pred CCccEEEecCCCCc-CCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcc-cchhhhCcC
Q 037941 59 PKLKLFFLFSEKLS-LVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQ-LPEEIGQLT 136 (308)
Q Consensus 59 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~-l~~~~~~l~ 136 (308)
++++.|++++|.++ +.+|..+ ..+++|++|++++|.+..+ .. ++.+++|++|++++|.++. +|..+..++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~-~~------~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI-AN------LPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCCC-TT------CCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred ccCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCCc-hh------hhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 34555555555544 3344322 4556666666666665555 22 5566666666666666664 555555566
Q ss_pred CCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEee
Q 037941 137 RLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEML 200 (308)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 200 (308)
+|+.|++++|. ++.++. ..++.+++|++|++++|.+.+.++ .....+..+++|+.|+++
T Consensus 89 ~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~----~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLND----YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTT----HHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHH----HHHHHHHHCCCcccccCC
Confidence 66666666665 444431 225666666666666666552211 001245566666666554
No 118
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=3.2e-14 Score=112.31 Aligned_cols=129 Identities=26% Similarity=0.388 Sum_probs=100.4
Q ss_pred CeeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEE
Q 037941 39 PIAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIF 118 (308)
Q Consensus 39 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L 118 (308)
.+.++++++.+..+|... .+++++|++++|.++ .++...+..+++|++|++++|.+..+|+.. +..+++|++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGV-----FDKLTKLTIL 81 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTT-----TTTCTTCCEE
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhH-----ccCCCccCEE
Confidence 356777888887777544 468888888888877 455555578888888888888888887764 6788888888
Q ss_pred eecCCcCcccchh-hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccc
Q 037941 119 SFRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHW 175 (308)
Q Consensus 119 ~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 175 (308)
++++|.++.+|.. +..+++|+.|++++|. ++.+|...+..+++|++|++++|.+.+
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence 8888888877654 6778888888888887 677777666778888888888888773
No 119
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=5.4e-15 Score=113.38 Aligned_cols=124 Identities=21% Similarity=0.249 Sum_probs=99.1
Q ss_pred CCCCeeEEeecCCCC--CCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC-CCCCCCCcccccc
Q 037941 36 QKDPIAISHPCRDIQ--ELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS-LPSTLGDVATVGV 111 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~~~~~~~l~~ 111 (308)
.+++++|++++|.+. .+|..+ .+++|++|++++|.+++. ..+..+++|++|++++|.+.. +|.. ++.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~------~~~ 86 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVL------AEK 86 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHH------HHH
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHH------hhh
Confidence 567888999988886 777776 888999999998887744 334788889999999998886 6654 667
Q ss_pred cccccEEeecCCcCcccc--hhhhCcCCCCEEecCCCCCCCccCc---chhcCCCCCceEEcc
Q 037941 112 LKKLVIFSFRNSHIEQLP--EEIGQLTRLKLLDLSTCSKLKSIRP---NVISNLPRLEELYMG 169 (308)
Q Consensus 112 l~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~l~~L~~L~l~ 169 (308)
+++|++|++++|.++.++ ..++.+++|+.|++++|. ++..+. ..+..+++|+.|+++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 888999999999888765 668888899999998887 666665 457788888888875
No 120
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.58 E-value=3.1e-16 Score=146.83 Aligned_cols=10 Identities=10% Similarity=0.115 Sum_probs=6.3
Q ss_pred CCcccEEecc
Q 037941 283 FPRLKHLLVQ 292 (308)
Q Consensus 283 ~~~L~~L~l~ 292 (308)
+++|+.|++.
T Consensus 402 ~~~L~~L~l~ 411 (592)
T 3ogk_B 402 LKNLCDFRLV 411 (592)
T ss_dssp CCSCCEEEEE
T ss_pred CCCCcEEEEe
Confidence 5566666665
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=2.1e-15 Score=119.08 Aligned_cols=107 Identities=16% Similarity=0.214 Sum_probs=47.6
Q ss_pred CccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhh-hCcCCCCEEecCCCCCCCccCc-chhcCCCC
Q 037941 85 SLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEI-GQLTRLKLLDLSTCSKLKSIRP-NVISNLPR 162 (308)
Q Consensus 85 ~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~-~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~ 162 (308)
+|++|++++|.++.+ .. +..+++|++|++++|.++.+|..+ ..+++|+.|++++|. ++.+|. ..+..+++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~------l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~ 114 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DG------FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKS 114 (176)
T ss_dssp CCSEEECCSSCCCEE-CC------CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTT
T ss_pred CCCEEECCCCCCCcc-cc------cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCC
Confidence 444444444444443 22 444455555555555544444322 444555555555544 344443 11444555
Q ss_pred CceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeecc
Q 037941 163 LEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILD 203 (308)
Q Consensus 163 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 203 (308)
|+.|++++|.+...+. .....+..+++|+.|+++.|.
T Consensus 115 L~~L~l~~N~i~~~~~----~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 115 LTYLCILRNPVTNKKH----YRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSSGGGGSTT----HHHHHHHHCTTCSEETTEECC
T ss_pred CCEEEecCCCCCCcHh----HHHHHHHHCCccceeCCCcCC
Confidence 5555555554441110 000124455555555555554
No 122
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=3.5e-14 Score=113.80 Aligned_cols=127 Identities=14% Similarity=0.311 Sum_probs=103.9
Q ss_pred eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEe
Q 037941 40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFS 119 (308)
Q Consensus 40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~ 119 (308)
+.++++++.+..+|... .+++++|++++|.++ .+|.. +.++++|++|++++|.++.+++.. +..+++|++|+
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~-~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~-----f~~l~~L~~L~ 84 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFT-LVPKE-LSNYKHLTLIDLSNNRISTLSNQS-----FSNMTQLLTLI 84 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCC-SCCGG-GGGCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEE
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCc-hhHHH-hhcccCCCEEECCCCcCCEeCHhH-----ccCCCCCCEEE
Confidence 46888888888888655 368899999998887 66644 478999999999999999887654 88889999999
Q ss_pred ecCCcCcccch-hhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccc
Q 037941 120 FRNSHIEQLPE-EIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHW 175 (308)
Q Consensus 120 l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 175 (308)
+++|.++.++. .+..+++|+.|++++|. ++.+|...+..+++|+.|++++|.+..
T Consensus 85 Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 85 LSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCeec
Confidence 99999887664 58888999999999988 778887767888899999999888763
No 123
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.55 E-value=6.9e-15 Score=137.66 Aligned_cols=57 Identities=9% Similarity=0.115 Sum_probs=39.8
Q ss_pred cCCCCeeEEeecCCCCCC-----CCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccC
Q 037941 35 MQKDPIAISHPCRDIQEL-----PEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNG 93 (308)
Q Consensus 35 ~~~~l~~L~l~~~~~~~~-----~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 93 (308)
..+++++|++++|.+..+ +... .+++|++|++++|.+.+ ++. .+..+++|+.|+++.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~-~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVG-FFKAAANLEEFCGGS 252 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHH-HHHHCTTCCEEEECB
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHH-HHhhhhHHHhhcccc
Confidence 368889999988887532 3333 78889999998887663 443 345677777777764
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.53 E-value=3.1e-14 Score=112.32 Aligned_cols=132 Identities=14% Similarity=0.118 Sum_probs=107.6
Q ss_pred hcCCCCeeEEeecCCCCCCCCcCC-CCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCccccccc
Q 037941 34 LMQKDPIAISHPCRDIQELPEKLE-CPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVL 112 (308)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l 112 (308)
....++++|++++|.+..++.... .++|++|++++|.+++. . .+..+++|++|++++|.+..+|+.+ +..+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~--~-~l~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l 87 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--D-GFPLLRRLKTLLVNNNRICRIGEGL-----DQAL 87 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--C-CCCCCSSCCEEECCSSCCCEECSCH-----HHHC
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc--c-ccccCCCCCEEECCCCcccccCcch-----hhcC
Confidence 346788999999999988876554 44999999999988743 2 2478899999999999999888773 4888
Q ss_pred ccccEEeecCCcCcccch--hhhCcCCCCEEecCCCCCCCccCcc---hhcCCCCCceEEccCCccc
Q 037941 113 KKLVIFSFRNSHIEQLPE--EIGQLTRLKLLDLSTCSKLKSIRPN---VISNLPRLEELYMGNSFTH 174 (308)
Q Consensus 113 ~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~ 174 (308)
++|++|++++|.++.+|. .+..+++|+.|++++|. +..+|.. .+..+++|+.|+++.|...
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 999999999999988886 78888999999999988 6677764 4778899999999888765
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.52 E-value=6.8e-14 Score=111.99 Aligned_cols=128 Identities=19% Similarity=0.222 Sum_probs=105.2
Q ss_pred ccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCC-CCCCcccccccccccEEeecCCcCccc-chhhhCcCCC
Q 037941 61 LKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGDVATVGVLKKLVIFSFRNSHIEQL-PEEIGQLTRL 138 (308)
Q Consensus 61 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~~~~~~~l~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L 138 (308)
.++++++++.++ .+|..++ .++++|++++|.+..++. .. ++.+++|++|++++|.++.+ |..+..+++|
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 80 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGL-----FGRLPHLVKLELKRNQLTGIEPNAFEGASHI 80 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCS-----GGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccc-----cccCCCCCEEECCCCCCCCcCHhHcCCcccC
Confidence 378899998885 6776553 389999999999998775 33 78899999999999999966 6779999999
Q ss_pred CEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCc
Q 037941 139 KLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQ 205 (308)
Q Consensus 139 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 205 (308)
+.|++++|. ++.++...+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.
T Consensus 81 ~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 81 QELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMP-------GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECT-------TSSTTCTTCCEEECTTCCBC
T ss_pred CEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCH-------HHhhcCCCCCEEEeCCCCcc
Confidence 999999998 777776668889999999999999884433 56778899999999998653
No 126
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.51 E-value=2.1e-15 Score=141.20 Aligned_cols=43 Identities=7% Similarity=-0.011 Sum_probs=23.2
Q ss_pred cccceeecCCccchhhhhhccCCCCCCcccEEecc-----ccccccccc
Q 037941 258 RRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQ-----NASEILYIV 301 (308)
Q Consensus 258 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~-----~c~~l~~i~ 301 (308)
++|++|.+ +|+.++..........+++|+.|++. +|..+...|
T Consensus 372 ~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 372 PKLESVLY-FCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp TTCCEEEE-EESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred hhHHHHHH-hcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 55666643 23444433222222346788888888 566766443
No 127
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=9.4e-15 Score=136.76 Aligned_cols=63 Identities=10% Similarity=0.042 Sum_probs=37.6
Q ss_pred CCcCceEEEeecCchhh-hhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEecccccc
Q 037941 233 YETSRTLKLKLDNRMYL-EHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASE 296 (308)
Q Consensus 233 ~~~L~~L~L~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 296 (308)
+++|+.|+|+.|..... ...+..-+++|++|++++|+. +..........+++|+.|++++|+.
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 56777777777654221 111212258888888888665 3333222235578888888888854
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=3e-13 Score=108.28 Aligned_cols=124 Identities=24% Similarity=0.308 Sum_probs=75.0
Q ss_pred cEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCE
Q 037941 62 KLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKL 140 (308)
Q Consensus 62 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~ 140 (308)
++++++++.++ .+|..+ .++|++|++++|.++.+|.. +..+++|++|++++|.++.++ ..+..+++|+.
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~~ip~~------~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFTLVPKE------LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCSCCGG------GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCchhHHH------hhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence 45666666655 455433 24566667776666666654 666666777777666666554 34666666666
Q ss_pred EecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeecc
Q 037941 141 LDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILD 203 (308)
Q Consensus 141 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 203 (308)
|++++|. ++.++...+..+++|+.|++++|.+...++ ..+..+++|+.|++++|.
T Consensus 83 L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 83 LILSYNR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPE-------GAFNDLSALSHLAIGANP 137 (193)
T ss_dssp EECCSSC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCT-------TTTTTCTTCCEEECCSSC
T ss_pred EECCCCc-cCEeCHHHhCCCCCCCEEECCCCCCCeeCh-------hhhhcCccccEEEeCCCC
Confidence 6666666 555555446666666666666666662221 235556666666666654
No 129
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=6e-13 Score=104.93 Aligned_cols=131 Identities=22% Similarity=0.278 Sum_probs=106.4
Q ss_pred CccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchh-hhCcCCC
Q 037941 60 KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEE-IGQLTRL 138 (308)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L 138 (308)
..+.++++++.++ .+|..+ .++|++|++++|.+..+|... +..+++|++|++++|.++.+|.. +..+++|
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 78 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGV-----FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHH-----hcCcccccEEECCCCcceEeChhHccCCCcc
Confidence 4578888888876 566533 478999999999999888764 78899999999999999987754 6889999
Q ss_pred CEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccc
Q 037941 139 KLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVM 207 (308)
Q Consensus 139 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 207 (308)
+.|++++|. ++.++...+..+++|+.|++++|.+...++ ..+..+++|+.|++++|.+...
T Consensus 79 ~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-------~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 79 TILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPD-------GIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------TTTTTCTTCCEEECCSSCBCCC
T ss_pred CEEECCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCH-------HHhcCCcccCEEEecCCCeecc
Confidence 999999998 777777667889999999999998883322 3457789999999999976543
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.46 E-value=9.1e-14 Score=132.95 Aligned_cols=116 Identities=19% Similarity=0.210 Sum_probs=102.6
Q ss_pred CCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchh
Q 037941 53 PEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEE 131 (308)
Q Consensus 53 ~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~ 131 (308)
+..+ .+++|+.|++++|.+. .++..++ .+++|++|+|++|.++.+|.. ++.+++|++|++++|.++.+|..
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~------~~~l~~L~~L~Ls~N~l~~lp~~ 288 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAE------IKNLSNLRVLDLSHNRLTSLPAE 288 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGG------GGGGTTCCEEECTTSCCSSCCSS
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChh------hhCCCCCCEEeCcCCcCCccChh
Confidence 4444 8899999999999987 7787775 799999999999999999988 89999999999999999999999
Q ss_pred hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccccccc
Q 037941 132 IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVE 178 (308)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 178 (308)
++.+++|+.|++++|. ++.+|.. ++.+++|+.|++++|.+.+..+
T Consensus 289 ~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~~~~p 333 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLEKQFL 333 (727)
T ss_dssp GGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCCSHHH
T ss_pred hcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCccCCCCh
Confidence 9999999999999998 7899988 8999999999999999985443
No 131
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=3.6e-13 Score=125.18 Aligned_cols=120 Identities=20% Similarity=0.236 Sum_probs=94.0
Q ss_pred CccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCc
Q 037941 85 SLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLE 164 (308)
Q Consensus 85 ~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 164 (308)
.|++|++++|.++.+|. ++.+++|++|++++|.++.+|..++.+++|+.|++++|. ++.+| . ++.+++|+
T Consensus 442 ~L~~L~Ls~n~l~~lp~-------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~-l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-------LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-G-VANLPRLQ 511 (567)
T ss_dssp TCSEEECTTSCCSSCCC-------GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-G-GTTCSSCC
T ss_pred CceEEEecCCCCCCCcC-------ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-c-cCCCCCCc
Confidence 58888888888888875 788888888888888888888888888888888888888 66677 3 78888888
Q ss_pred eEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhc-----cCCceeE
Q 037941 165 ELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS-----LGLERNK 220 (308)
Q Consensus 165 ~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~-----~~L~~l~ 220 (308)
.|++++|.+.+.. .+..+..+++|+.|++++|.++.+|..... ++|+.|+
T Consensus 512 ~L~Ls~N~l~~~~------~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 512 ELLLCNNRLQQSA------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp EEECCSSCCCSSS------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred EEECCCCCCCCCC------CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 8888888887332 046778888888888888888777664422 6666653
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=3.5e-13 Score=125.24 Aligned_cols=124 Identities=18% Similarity=0.251 Sum_probs=99.7
Q ss_pred CccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCC
Q 037941 60 KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLK 139 (308)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~ 139 (308)
.|+.|++++|.+++ +|. +..+++|++|++++|.+..+|.. ++.+++|++|++++|.++.+| .++.+++|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~--~~~l~~L~~L~Ls~N~l~~lp~~------~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~ 511 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH--LEQLLLVTHLDLSHNRLRALPPA------LAALRCLEVLQASDNALENVD-GVANLPRLQ 511 (567)
T ss_dssp TCSEEECTTSCCSS-CCC--GGGGTTCCEEECCSSCCCCCCGG------GGGCTTCCEEECCSSCCCCCG-GGTTCSSCC
T ss_pred CceEEEecCCCCCC-CcC--ccccccCcEeecCcccccccchh------hhcCCCCCEEECCCCCCCCCc-ccCCCCCCc
Confidence 58888888888874 665 47889999999999999988887 888999999999999998888 688999999
Q ss_pred EEecCCCCCCCcc--CcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEe
Q 037941 140 LLDLSTCSKLKSI--RPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEM 199 (308)
Q Consensus 140 ~L~l~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l 199 (308)
.|++++|. ++.+ |.. ++.+++|+.|++++|.+.+.++ .....+..+++|+.|++
T Consensus 512 ~L~Ls~N~-l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~----~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 512 ELLLCNNR-LQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEG----IQERLAEMLPSVSSILT 567 (567)
T ss_dssp EEECCSSC-CCSSSTTGG-GGGCTTCCEEECTTSGGGGSSS----CTTHHHHHCTTCSEEEC
T ss_pred EEECCCCC-CCCCCCcHH-HhcCCCCCEEEecCCcCCCCcc----HHHHHHHHCcccCccCC
Confidence 99999988 6666 555 7889999999999998885433 22234456888888863
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=1.7e-15 Score=121.96 Aligned_cols=138 Identities=18% Similarity=0.271 Sum_probs=95.7
Q ss_pred CCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCccc
Q 037941 50 QELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQL 128 (308)
Q Consensus 50 ~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l 128 (308)
..+|..+ .+++|++|++++|.++. +| . +.++++|++|++++|.+..+|.. +..+++|++|++++|.++.+
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~-~~~l~~L~~L~l~~n~l~~l~~~------~~~~~~L~~L~L~~N~l~~l 108 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNNIEK-IS-S-LSGMENLRILSLGRNLIKKIENL------DAVADTLEELWISYNQIASL 108 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEEESC-CC-C-HHHHTTCCEEEEEEEEECSCSSH------HHHHHHCSEEEEEEEECCCH
T ss_pred hhhhHHHhcCCCCCEEECCCCCCcc-cc-c-cccCCCCCEEECCCCCcccccch------hhcCCcCCEEECcCCcCCcC
Confidence 3444455 78888888888887764 55 3 46788888888888888887775 66778888888888888877
Q ss_pred chhhhCcCCCCEEecCCCCCCCccCc-chhcCCCCCceEEccCCcccccccCC---cccchhhhhcCCCCCEEE
Q 037941 129 PEEIGQLTRLKLLDLSTCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEVEGQ---NNASLAELNQLSRLTTLE 198 (308)
Q Consensus 129 ~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~l~~l~~L~~L~ 198 (308)
| .+..+++|+.|++++|. ++.++. ..+..+++|++|++++|.+.+..+.. .......+..+++|+.|+
T Consensus 109 ~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 109 S-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp H-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred C-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 6 47778888888888887 565553 33677888888888888776332210 001112366777888776
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=2.7e-15 Score=120.76 Aligned_cols=112 Identities=19% Similarity=0.174 Sum_probs=97.2
Q ss_pred hcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCCEEecCCCCCCCccCcchhcC
Q 037941 80 FEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLKLLDLSTCSKLKSIRPNVISN 159 (308)
Q Consensus 80 ~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 159 (308)
+..+++|++|++++|.+..+| . +..+++|++|++++|.++.+|..+..+++|+.|++++|. ++.+|. +..
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~------~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~~--~~~ 113 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-S------LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLSG--IEK 113 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-C------HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHHH--HHH
T ss_pred HhcCCCCCEEECCCCCCcccc-c------cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCCc--ccc
Confidence 478999999999999999998 5 899999999999999999999888888999999999998 777773 788
Q ss_pred CCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccc
Q 037941 160 LPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVM 207 (308)
Q Consensus 160 l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 207 (308)
+++|++|++++|.+.... .+..+..+++|+.|++++|.+...
T Consensus 114 l~~L~~L~l~~N~i~~~~------~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 114 LVNLRVLYMSNNKITNWG------EIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHHSSEEEESEEECCCHH------HHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCCCCEEECCCCcCCchh------HHHHHhcCCCCCEEEecCCccccc
Confidence 999999999999988221 124688999999999999976544
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=3.6e-12 Score=100.25 Aligned_cols=103 Identities=26% Similarity=0.324 Sum_probs=52.9
Q ss_pred cEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchh-hhCcCCCCE
Q 037941 62 KLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEE-IGQLTRLKL 140 (308)
Q Consensus 62 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~ 140 (308)
+.++++++.++ .+|..+ .++|++|++++|.+..+++.. +..+++|++|++++|.++.+|.. +..+++|+.
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGV-----FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHH-----hcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence 34444444443 334322 145555555555555543322 55555555555555555555543 345555555
Q ss_pred EecCCCCCCCccCcchhcCCCCCceEEccCCccc
Q 037941 141 LDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTH 174 (308)
Q Consensus 141 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 174 (308)
|++++|. ++.+|...+..+++|+.|++++|.+.
T Consensus 86 L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 86 LDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred EECCCCc-cceeCHHHhccccCCCEEEeCCCCcc
Confidence 5555555 44555444555556666666665555
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=4.8e-12 Score=99.12 Aligned_cols=103 Identities=24% Similarity=0.302 Sum_probs=54.9
Q ss_pred cEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchh-hhCcCCCCE
Q 037941 62 KLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEE-IGQLTRLKL 140 (308)
Q Consensus 62 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~ 140 (308)
+++++++|.++ .+|..+ .++|++|++++|.+..+++.. +..+++|++|++++|.++.+|.. +..+++|+.
T Consensus 12 ~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~-----~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGV-----FDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTT-----TTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhh-----hcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 44555554444 334322 245555555555555553332 55555566666666655555433 355566666
Q ss_pred EecCCCCCCCccCcchhcCCCCCceEEccCCccc
Q 037941 141 LDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTH 174 (308)
Q Consensus 141 L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 174 (308)
|++++|. ++.++...+..+++|+.|++++|.+.
T Consensus 83 L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 83 LSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6666655 45555544555666666666666555
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=4.7e-12 Score=99.14 Aligned_cols=101 Identities=16% Similarity=0.403 Sum_probs=64.1
Q ss_pred eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEe
Q 037941 40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFS 119 (308)
Q Consensus 40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~ 119 (308)
++++++++.+..+|... .+++++|++++|.+++..+.. |.++++|++|++++|.++.+|+.. +..+++|++|+
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~-----f~~l~~L~~L~ 84 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQITKLEPGV-FDRLTQLTRLDLDNNQLTVLPAGV-----FDKLTQLTQLS 84 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTT-TTTCTTCSEEECCSSCCCCCCTTT-----TTTCTTCCEEE
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcCCccChhh-hcCcccCCEEECCCCCcCccChhh-----ccCCCCCCEEE
Confidence 45666666666666544 366667777776666333333 356677777777777776666653 56666777777
Q ss_pred ecCCcCcccch-hhhCcCCCCEEecCCCC
Q 037941 120 FRNSHIEQLPE-EIGQLTRLKLLDLSTCS 147 (308)
Q Consensus 120 l~~~~i~~l~~-~~~~l~~L~~L~l~~~~ 147 (308)
+++|.++.+|. .+..+++|+.|++++|.
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 77777666654 36666677777777665
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=5.2e-12 Score=99.32 Aligned_cols=106 Identities=15% Similarity=0.323 Sum_probs=69.9
Q ss_pred eeEEeecCCCCCCCCcCCCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEe
Q 037941 40 IAISHPCRDIQELPEKLECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFS 119 (308)
Q Consensus 40 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~ 119 (308)
+.++++++.+..+|.... ++|++|++++|.+++..+.. |.++++|++|++++|.+..+|... +..+++|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~i~~~~-----~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQITKLEPGV-FDHLVNLQQLYFNSNKLTAIPTGV-----FDKLTQLTQLD 87 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEE
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCccccCHHH-hcCCcCCCEEECCCCCCCccChhH-----hCCcchhhEEE
Confidence 456777777766666543 67777777777766433333 356777777777777777776653 56677777777
Q ss_pred ecCCcCcccchh-hhCcCCCCEEecCCCCCCCccC
Q 037941 120 FRNSHIEQLPEE-IGQLTRLKLLDLSTCSKLKSIR 153 (308)
Q Consensus 120 l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~ 153 (308)
+++|.++.+|.. +..+++|+.|++++|. +...+
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~ 121 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCEC 121 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTB
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCC-ccccc
Confidence 777777766654 6667777777777776 44443
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.31 E-value=7.4e-12 Score=108.65 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=46.6
Q ss_pred CCCCeeEEeecCCCC--------------------CCCCcC--C--------CCCccEEEecCCCCcCCCCchhhcCCCC
Q 037941 36 QKDPIAISHPCRDIQ--------------------ELPEKL--E--------CPKLKLFFLFSEKLSLVIPDLFFEGVPS 85 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~--------------------~~~~~~--~--------~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 85 (308)
.+++++|++++|.+. .+|... . |++|+.+.+.. .++ .+++..|.++++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-ccc-chhHHHhhcCcc
Confidence 788999999999886 223222 4 66666666665 444 445555566666
Q ss_pred ccEEEccCCCCCCCCCCCCCcccccccccccEEee
Q 037941 86 LQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSF 120 (308)
Q Consensus 86 L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l 120 (308)
|+.+++..+.+..+++.. |..+.++.++..
T Consensus 126 L~~l~l~~n~i~~i~~~a-----F~~~~~l~~l~~ 155 (329)
T 3sb4_A 126 LKICQIRKKTAPNLLPEA-----LADSVTAIFIPL 155 (329)
T ss_dssp CCEEEBCCSSCCEECTTS-----SCTTTCEEEECT
T ss_pred cceEEcCCCCccccchhh-----hcCCCceEEecC
Confidence 666666666665555543 444444444443
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.12 E-value=1.8e-12 Score=114.28 Aligned_cols=168 Identities=12% Similarity=0.002 Sum_probs=113.7
Q ss_pred hcCCCCeeEEeecCCCCCC-----CCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCc
Q 037941 34 LMQKDPIAISHPCRDIQEL-----PEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDV 106 (308)
Q Consensus 34 ~~~~~l~~L~l~~~~~~~~-----~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~ 106 (308)
...+.++.|++++|.+... .... ..++|++|++++|.++......++..+.+|+.|++++|.++...... +
T Consensus 69 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~--L 146 (372)
T 3un9_A 69 EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD--L 146 (372)
T ss_dssp HHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH--H
T ss_pred HHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH--H
Confidence 3467899999999988432 2221 34689999999998765434444455678999999999886322110 0
Q ss_pred c-cc-cccccccEEeecCCcCc-----ccchhhhCcCCCCEEecCCCCCCCccC----cchhcCCCCCceEEccCCcccc
Q 037941 107 A-TV-GVLKKLVIFSFRNSHIE-----QLPEEIGQLTRLKLLDLSTCSKLKSIR----PNVISNLPRLEELYMGNSFTHW 175 (308)
Q Consensus 107 ~-~l-~~l~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~ 175 (308)
. .+ ...++|++|++++|.++ .++..+..+++|++|++++|. ++... ...+...++|++|++++|.+.+
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 0 01 23578999999999886 355556788899999999988 54322 1125667789999999998873
Q ss_pred cccCCcccchhhhhcCCCCCEEEeeeccCccc
Q 037941 176 EVEGQNNASLAELNQLSRLTTLEMLILDAQVM 207 (308)
Q Consensus 176 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 207 (308)
... ......+...+.|++|++++|.++..
T Consensus 226 ~g~---~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 226 TAA---LALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHH---HHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHH---HHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 211 12334566778899999999876543
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.10 E-value=5.1e-10 Score=97.01 Aligned_cols=56 Identities=9% Similarity=0.125 Sum_probs=44.8
Q ss_pred CCCCeeEEeecCCCCCCCCcC--CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccC
Q 037941 36 QKDPIAISHPCRDIQELPEKL--ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNG 93 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 93 (308)
.++++.+.+.. .+..++... .|++|+.+.+..|.++ .+++..|.++.++..+....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcc
Confidence 68899999998 888887765 8999999999999877 56666677777777777655
No 142
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=5.3e-10 Score=97.54 Aligned_cols=100 Identities=15% Similarity=0.128 Sum_probs=63.6
Q ss_pred eEEeecC-CCCCCCCcC-CCCCccEEEecC-CCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccE
Q 037941 41 AISHPCR-DIQELPEKL-ECPKLKLFFLFS-EKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVI 117 (308)
Q Consensus 41 ~L~l~~~-~~~~~~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~ 117 (308)
.++.+++ .+..+|. + .+++|+.|++++ |.+. .++...|.++++|++|+|++|.++.+|+.. |..+++|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~-----~~~l~~L~~ 84 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDA-----FHFTPRLSR 84 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTG-----GGSCSCCCE
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHH-----hcCCcCCCE
Confidence 3455555 5666666 5 666777777775 6665 344333466777777777777777665543 667777777
Q ss_pred EeecCCcCcccchhhhCcCCCCEEecCCCC
Q 037941 118 FSFRNSHIEQLPEEIGQLTRLKLLDLSTCS 147 (308)
Q Consensus 118 L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~ 147 (308)
|+|++|.++.+|..+.....|+.|++.+|.
T Consensus 85 L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 85 LNLSFNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp EECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred EeCCCCccceeCHHHcccCCceEEEeeCCC
Confidence 777777777666544433347777777666
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.03 E-value=8.3e-09 Score=91.75 Aligned_cols=100 Identities=16% Similarity=0.197 Sum_probs=52.1
Q ss_pred CccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccchhhhCcCCCC
Q 037941 60 KLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLTRLK 139 (308)
Q Consensus 60 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~ 139 (308)
+|+.+.+..+ ++ .++...|.+ .+|+.+.+.. .+..++... |..+.+|+.+++..|.++.++.......+|+
T Consensus 136 ~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~a-----F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~ 206 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDI-----FYYCYNLKKADLSKTKITKLPASTFVYAGIE 206 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSST-----TTTCTTCCEEECTTSCCSEECTTTTTTCCCS
T ss_pred CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHH-----hhCcccCCeeecCCCcceEechhhEeecccC
Confidence 4566655543 22 334433433 2455555553 444444443 5556666666666665655554433345566
Q ss_pred EEecCCCCCCCccCcchhcCCCCCceEEccC
Q 037941 140 LLDLSTCSKLKSIRPNVISNLPRLEELYMGN 170 (308)
Q Consensus 140 ~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 170 (308)
.+.+..+ ++.++...|..+.+|+.+.+..
T Consensus 207 ~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 207 EVLLPVT--LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp EEECCTT--CCEECTTTTTTCTTCCCEECCT
T ss_pred EEEeCCc--hheehhhHhhCCCCCCEEecCC
Confidence 6665532 4555555555566666665554
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.02 E-value=8.6e-10 Score=96.21 Aligned_cols=105 Identities=20% Similarity=0.226 Sum_probs=88.8
Q ss_pred cEEEecCC-CCcCCCCchhhcCCCCccEEEccC-CCCCCCCCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCC
Q 037941 62 KLFFLFSE-KLSLVIPDLFFEGVPSLQVLSLNG-FHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRL 138 (308)
Q Consensus 62 ~~L~l~~~-~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L 138 (308)
..++.+++ .++ .+|. +..+.+|++|+|++ |.+..+|+.. ++.+++|++|+|++|.++.++ ..+..+++|
T Consensus 11 ~~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~-----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 82 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRD-----LRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82 (347)
T ss_dssp SCEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGG-----SCSCCCCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred CEEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhH-----hccccCCCEEECCCCccceeCHHHhcCCcCC
Confidence 45677777 666 6887 57899999999996 9999888654 899999999999999999665 568999999
Q ss_pred CEEecCCCCCCCccCcchhcCCCCCceEEccCCccccc
Q 037941 139 KLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWE 176 (308)
Q Consensus 139 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 176 (308)
+.|++++|. ++.+|...+..+. |+.|++.+|.+...
T Consensus 83 ~~L~l~~N~-l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 83 SRLNLSFNA-LESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CEEECCSSC-CSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CEEeCCCCc-cceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 999999998 7888887566555 99999999988743
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.96 E-value=7.9e-09 Score=91.89 Aligned_cols=232 Identities=9% Similarity=0.091 Sum_probs=154.2
Q ss_pred CCCeeEEeecCCCCCCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccc
Q 037941 37 KDPIAISHPCRDIQELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKL 115 (308)
Q Consensus 37 ~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L 115 (308)
.+++.+.+..+ +..++... .-.+|+.+.+.. .+. .++...|.++.+|+.+++..+.+..+|... +. ..+|
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a-----F~-~~~L 205 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPAST-----FV-YAGI 205 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTT-----TT-TCCC
T ss_pred CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhh-----Ee-eccc
Confidence 46788888655 66666554 224799999886 444 566666788999999999999999888874 55 5889
Q ss_pred cEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCC
Q 037941 116 VIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRL 194 (308)
Q Consensus 116 ~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L 194 (308)
+.+.+..+ ++.++ ..+..+++|+.+.+..+ ++.++...|.. .+|+.+.+..+ +... ....|..+++|
T Consensus 206 ~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~~I-------~~~aF~~c~~L 273 (401)
T 4fdw_A 206 EEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VTNI-------ASRAFYYCPEL 273 (401)
T ss_dssp SEEECCTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CCEE-------CTTTTTTCTTC
T ss_pred CEEEeCCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-ccEE-------ChhHhhCCCCC
Confidence 99999744 77666 45778889999999874 67777776776 78998888543 3311 12577888999
Q ss_pred CEEEeeeccCc-----cccchhhc--cCCceeEeecc--Cc-ccccCCCCcCceEEEeecCchhhhhhHHHHhcccceee
Q 037941 195 TTLEMLILDAQ-----VMPRELFS--LGLERNKIFLG--DV-WSWTGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLH 264 (308)
Q Consensus 195 ~~L~l~~~~~~-----~~p~~~~~--~~L~~l~i~~~--~~-~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~ 264 (308)
+.+.+.++... .++...+. .+|+.+.+..+ .+ ...+..+.+|+.+.|..+ ..........-+ +|+.+.
T Consensus 274 ~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~ 351 (401)
T 4fdw_A 274 AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVK 351 (401)
T ss_dssp CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEE
T ss_pred CEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEE
Confidence 99998877654 56666655 67887776422 01 123566788888888554 222233333333 788888
Q ss_pred cCCccchhhhhhccCCCCCC-cccEEeccc
Q 037941 265 LDKLNGLQNVLHELDGEGFP-RLKHLLVQN 293 (308)
Q Consensus 265 l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~ 293 (308)
+.+ +....+.... ..+++ .++.|.+-.
T Consensus 352 l~~-n~~~~l~~~~-F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 352 VEG-TTPPQVFEKV-WYGFPDDITVIRVPA 379 (401)
T ss_dssp ECC-SSCCBCCCSS-CCCSCTTCCEEEECG
T ss_pred EcC-CCCccccccc-ccCCCCCccEEEeCH
Confidence 887 3333322211 23443 566776644
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.86 E-value=3.7e-10 Score=99.48 Aligned_cols=161 Identities=14% Similarity=0.098 Sum_probs=105.6
Q ss_pred CCCCccEEEecCCCCcCCCCchhh----cCCCCccEEEccCCCCCC-CCCCCCCcccccccccccEEeecCCcCcccc--
Q 037941 57 ECPKLKLFFLFSEKLSLVIPDLFF----EGVPSLQVLSLNGFHFPS-LPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-- 129 (308)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~-lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-- 129 (308)
.++++++|++++|.++......+. ....+|++|++++|.++. -...+ ...+.+|++|++++|.++...
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l-----~~~L~~L~~L~Ls~n~l~~~~~~ 144 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-----LPVFLRARKLGLQLNSLGPEACK 144 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHT-----HHHHHTEEEEECCSSCCCHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHH-----HHHHHhccHhhcCCCCCCHHHHH
Confidence 356899999999988643222221 133689999999998862 11121 345678999999999887322
Q ss_pred ---hhh-hCcCCCCEEecCCCCCCCccCcc----hhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeee
Q 037941 130 ---EEI-GQLTRLKLLDLSTCSKLKSIRPN----VISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLI 201 (308)
Q Consensus 130 ---~~~-~~l~~L~~L~l~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 201 (308)
..+ ...++|+.|++++|. ++..... .+...++|++|++++|.+.+... ......+...+.|++|++++
T Consensus 145 ~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~---~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 145 DLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL---ELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp HHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH---HHHHHHGGGCSCCCEEECCS
T ss_pred HHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH---HHHHHHHhcCCCcCeEECCC
Confidence 222 346789999999998 5442211 14678899999999998873211 12235667788999999999
Q ss_pred ccCccccc-----hhhc-cCCceeEeeccCc
Q 037941 202 LDAQVMPR-----ELFS-LGLERNKIFLGDV 226 (308)
Q Consensus 202 ~~~~~~p~-----~~~~-~~L~~l~i~~~~~ 226 (308)
|.++.... .+.. ++|+.|++..+.+
T Consensus 221 N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 221 NGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp SCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred CCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 98764322 2211 5666666665554
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.47 E-value=3.5e-07 Score=79.99 Aligned_cols=204 Identities=15% Similarity=0.135 Sum_probs=103.3
Q ss_pred CCCCeeEEeecCCCC--C-------CCCcC-CCCCccEEEecCCCCc-----C---CCCchhhcCCCCccEEEccCCCCC
Q 037941 36 QKDPIAISHPCRDIQ--E-------LPEKL-ECPKLKLFFLFSEKLS-----L---VIPDLFFEGVPSLQVLSLNGFHFP 97 (308)
Q Consensus 36 ~~~l~~L~l~~~~~~--~-------~~~~~-~~~~L~~L~l~~~~~~-----~---~~~~~~~~~l~~L~~L~l~~~~~~ 97 (308)
...++.|.+....+. . +.... .+++|+.|.+...... + .-...++..+++|+.|+++++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 345677777755432 1 11122 5678888887654221 0 012234467788888888776322
Q ss_pred CCCCCCCCcccccccccccEEeecCCcCc-ccchhhh--CcCCCCEEecCCCCC-------CCccCcch-hcCCCCCceE
Q 037941 98 SLPSTLGDVATVGVLKKLVIFSFRNSHIE-QLPEEIG--QLTRLKLLDLSTCSK-------LKSIRPNV-ISNLPRLEEL 166 (308)
Q Consensus 98 ~lp~~~~~~~~l~~l~~L~~L~l~~~~i~-~l~~~~~--~l~~L~~L~l~~~~~-------~~~~~~~~-~~~l~~L~~L 166 (308)
.++. +. +++|++|++..|.+. .....+. .+++|+.|+++.+.. +..+...+ ...+++|++|
T Consensus 186 ~l~~-------~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L 257 (362)
T 2ra8_A 186 SIGK-------KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL 257 (362)
T ss_dssp BCCS-------CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEE
T ss_pred eecc-------cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEE
Confidence 3433 22 677888888777765 2223333 677888887753110 11111110 1246677777
Q ss_pred EccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhccCCceeEeeccCcccccCCCCcCceEEEeecCc
Q 037941 167 YMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFSLGLERNKIFLGDVWSWTGKYETSRTLKLKLDNR 246 (308)
Q Consensus 167 ~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~~~L~~l~i~~~~~~~~~~~~~~L~~L~L~~~~~ 246 (308)
++.+|.+.+... ....+...+++|++|+++.|.++..-... +......+++|+.|+|+.|..
T Consensus 258 ~L~~~~i~~~~~----~~la~a~~~~~L~~LdLs~n~L~d~G~~~--------------L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 258 GIVDAEEQNVVV----EMFLESDILPQLETMDISAGVLTDEGARL--------------LLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp EEESCTTHHHHH----HHHHHCSSGGGCSEEECCSSCCBHHHHHH--------------HHTTHHHHTTCSEEECCSBBC
T ss_pred eCCCCCCchHHH----HHHHhCccCCCCCEEECCCCCCChHHHHH--------------HHhhcccCCcceEEECCCCcC
Confidence 777776652111 11111124667777777666443210000 001123456788888877643
Q ss_pred hhhhhhHHHHhccc-ceeecCC
Q 037941 247 MYLEHGIKMLLRRT-EDLHLDK 267 (308)
Q Consensus 247 ~~~~~~~~~~~~~L-~~L~l~~ 267 (308)
. +.++..+-..+ .+++++.
T Consensus 320 ~--d~~~~~l~~alg~~~~~~~ 339 (362)
T 2ra8_A 320 S--DEMKKELQKSLPMKIDVSD 339 (362)
T ss_dssp C--HHHHHHHHHHCCSEEECCS
T ss_pred C--HHHHHHHHHHcCCEEEecC
Confidence 2 34444432223 5566665
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=1.1e-07 Score=75.06 Aligned_cols=91 Identities=15% Similarity=0.105 Sum_probs=47.2
Q ss_pred ccccccccEEeecCCcCc-----ccchhhhCcCCCCEEecCCCCCCCc-----cCcchhcCCCCCceEEc--cCCccccc
Q 037941 109 VGVLKKLVIFSFRNSHIE-----QLPEEIGQLTRLKLLDLSTCSKLKS-----IRPNVISNLPRLEELYM--GNSFTHWE 176 (308)
Q Consensus 109 l~~l~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~~l~~L~~L~l--~~~~~~~~ 176 (308)
+...++|++|++++|.+. .+...+...++|+.|++++|. ++. +... +...++|++|++ ++|.+.+.
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGILALVEA-LQSNTSLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHHHHHHHG-GGGCSSCCEEECCCCSSCCCHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHHHHHHHH-HHhCCCceEEEecCCCCCCCHH
Confidence 334455666666666554 233344445566666666665 332 1222 444556666666 55665521
Q ss_pred ccCCcccchhhhhcCCCCCEEEeeeccC
Q 037941 177 VEGQNNASLAELNQLSRLTTLEMLILDA 204 (308)
Q Consensus 177 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 204 (308)
.. ......+...+.|++|++++|.+
T Consensus 139 g~---~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 139 VE---MEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HH---HHHHHHHHHCSSCCEEECCCSSH
T ss_pred HH---HHHHHHHHhCCCcCEEeccCCCC
Confidence 11 11223445556677777766654
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.37 E-value=4.8e-07 Score=79.12 Aligned_cols=159 Identities=14% Similarity=0.119 Sum_probs=102.0
Q ss_pred cCCCCeeEEeecCCCC----------CCCCcC-CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCC-CCCC
Q 037941 35 MQKDPIAISHPCRDIQ----------ELPEKL-ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPS-LPST 102 (308)
Q Consensus 35 ~~~~l~~L~l~~~~~~----------~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~ 102 (308)
.+++|+.|.+...... .+.... .+|+|+.|.++++.-. .++. + .+++|+.|++..+.+.. ....
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~--~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K--PRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C--BCTTCSEEEEECSBCCHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c--cCCCCcEEEEecCCCChHHHHH
Confidence 4679999998754331 233333 7899999999887422 2333 2 37899999998887652 1111
Q ss_pred CCCccccc--ccccccEEeecCC--c------Ccccchhh--hCcCCCCEEecCCCCCCCccCcchh--cCCCCCceEEc
Q 037941 103 LGDVATVG--VLKKLVIFSFRNS--H------IEQLPEEI--GQLTRLKLLDLSTCSKLKSIRPNVI--SNLPRLEELYM 168 (308)
Q Consensus 103 ~~~~~~l~--~l~~L~~L~l~~~--~------i~~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~--~~l~~L~~L~l 168 (308)
+. .+++|++|+++.+ . +..+...+ ..+++|++|++.+|......+..+. ..+++|++|++
T Consensus 213 ------l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdL 286 (362)
T 2ra8_A 213 ------ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI 286 (362)
T ss_dssp ------HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEEC
T ss_pred ------HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEEC
Confidence 32 6899999998532 1 22233323 3578999999999873322222211 25789999999
Q ss_pred cCCcccccccCCcccchhhhhcCCCCCEEEeeeccCcc
Q 037941 169 GNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQV 206 (308)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 206 (308)
+.|.+.+... ......+..+++|+.|+++.|.++.
T Consensus 287 s~n~L~d~G~---~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 287 SAGVLTDEGA---RLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp CSSCCBHHHH---HHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CCCCCChHHH---HHHHhhcccCCcceEEECCCCcCCH
Confidence 9998773211 1222344678999999999987543
No 150
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=1.3e-06 Score=67.73 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=38.4
Q ss_pred cccEEeecCCcCccc-chhhhCcCCCCEEecCCCCCCCccCcchhcCC----CCCceEEccCCc-ccccccCCcccchhh
Q 037941 114 KLVIFSFRNSHIEQL-PEEIGQLTRLKLLDLSTCSKLKSIRPNVISNL----PRLEELYMGNSF-THWEVEGQNNASLAE 187 (308)
Q Consensus 114 ~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~~~~~~~~ 187 (308)
+|++||+++|.++.. -..+..+++|+.|++++|..++.-.-..++.+ ++|++|++++|. ++ +..+..
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT-------D~Gl~~ 134 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT-------DKGIIA 134 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC-------HHHHHH
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC-------HHHHHH
Confidence 355555555554411 12244555555555555543433222223332 245555555553 33 223344
Q ss_pred hhcCCCCCEEEeeec
Q 037941 188 LNQLSRLTTLEMLIL 202 (308)
Q Consensus 188 l~~l~~L~~L~l~~~ 202 (308)
++.+++|++|+++++
T Consensus 135 L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDL 149 (176)
T ss_dssp GGGCTTCCEEEEESC
T ss_pred HhcCCCCCEEECCCC
Confidence 555566666666655
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.20 E-value=5.7e-07 Score=70.98 Aligned_cols=111 Identities=15% Similarity=0.098 Sum_probs=74.2
Q ss_pred CCCCccEEEecCC-CCcCCCC---chhhcCCCCccEEEccCCCCCC-----CCCCCCCcccccccccccEEeecCCcCc-
Q 037941 57 ECPKLKLFFLFSE-KLSLVIP---DLFFEGVPSLQVLSLNGFHFPS-----LPSTLGDVATVGVLKKLVIFSFRNSHIE- 126 (308)
Q Consensus 57 ~~~~L~~L~l~~~-~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~-----lp~~~~~~~~l~~l~~L~~L~l~~~~i~- 126 (308)
..++|++|++++| .+...-. ...+...+.|++|++++|.+.. +... +...++|++|++++|.+.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~------L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEM------LKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHH------HHHCSSCCEEECCSSCCCH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHH------HHhCCCcCEEECcCCcCCH
Confidence 5677777888777 6543211 1122456788888888888762 2222 455578889999988887
Q ss_pred ----ccchhhhCcCCCCEEec--CCCCCCCccCc----chhcCCCCCceEEccCCccc
Q 037941 127 ----QLPEEIGQLTRLKLLDL--STCSKLKSIRP----NVISNLPRLEELYMGNSFTH 174 (308)
Q Consensus 127 ----~l~~~~~~l~~L~~L~l--~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~ 174 (308)
.+...+...++|+.|++ ++|. ++.-.. ..+...++|++|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 25566777788999999 7776 543221 12455688999999988776
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.16 E-value=3.6e-06 Score=65.27 Aligned_cols=68 Identities=9% Similarity=0.048 Sum_probs=54.0
Q ss_pred cCCCCcCceEEEeecCchhhhhhHHHHh------cccceeecCCccchhhhhhccCCCCCCcccEEeccccccccc
Q 037941 230 TGKYETSRTLKLKLDNRMYLEHGIKMLL------RRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQNASEILY 299 (308)
Q Consensus 230 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~------~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 299 (308)
...+++|+.|+|+.|..++ +.++..+. ++|++|++++|..+++.+.... ..+++|++|++++|+++..
T Consensus 81 L~~~~~L~~L~L~~C~~It-D~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIE-DGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GTTCSCCCEEEEESCTTCC-HHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCCEEEeCCCCccC-HHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCCCCCEEECCCCCCCCc
Confidence 4578899999999997765 55555442 4799999999999888766543 4689999999999998864
No 153
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.16 E-value=3e-05 Score=68.57 Aligned_cols=58 Identities=24% Similarity=0.252 Sum_probs=29.8
Q ss_pred ccccccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEcc
Q 037941 109 VGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMG 169 (308)
Q Consensus 109 l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 169 (308)
+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ ++.++...+.++..|+.+.+.
T Consensus 158 F~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 158 FATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCC
T ss_pred hcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecC
Confidence 445566666666543 23333 33555566666666543 344444445555555555443
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.05 E-value=5.5e-06 Score=68.97 Aligned_cols=81 Identities=23% Similarity=0.310 Sum_probs=62.6
Q ss_pred cCCCCccEEEccCCCCCCCC---CCCCCcccccccccccEEeecCCcCcccchhhhCcC--CCCEEecCCCCCCCccCc-
Q 037941 81 EGVPSLQVLSLNGFHFPSLP---STLGDVATVGVLKKLVIFSFRNSHIEQLPEEIGQLT--RLKLLDLSTCSKLKSIRP- 154 (308)
Q Consensus 81 ~~l~~L~~L~l~~~~~~~lp---~~~~~~~~l~~l~~L~~L~l~~~~i~~l~~~~~~l~--~L~~L~l~~~~~~~~~~~- 154 (308)
..+++|+.|+|++|.+..++ .. +..+++|++|++++|.++.+.. +..+. +|+.|++++|.....+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~------~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~ 239 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSI------VQKAPNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQ 239 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTH------HHHSTTCCEEECTTSCCCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSH
T ss_pred hhCCCCCEEECCCCCCCCCccchhH------HhhCCCCCEEECCCCccCCchh-hhhcccCCcceEEccCCcCccccCcc
Confidence 46889999999999998654 33 6689999999999999987633 55555 899999999985544542
Q ss_pred -----chhcCCCCCceEEc
Q 037941 155 -----NVISNLPRLEELYM 168 (308)
Q Consensus 155 -----~~~~~l~~L~~L~l 168 (308)
.++..+++|+.||-
T Consensus 240 ~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 240 STYISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHHHCTTCCEESS
T ss_pred hhHHHHHHHHCcccCeECC
Confidence 24677899998874
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.02 E-value=4.8e-06 Score=69.32 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=33.7
Q ss_pred hCcCCCCEEecCCCCCCCccCc--chhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCc
Q 037941 133 GQLTRLKLLDLSTCSKLKSIRP--NVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQ 205 (308)
Q Consensus 133 ~~l~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 205 (308)
.++++|+.|++++|. +..++. ..+..+++|+.|++++|.+.+. ..+..+..+ +|++|++++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~------~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSE------RELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSG------GGGGGGTTS-CCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCc------hhhhhcccC-CcceEEccCCcCc
Confidence 345666666666665 433321 1244566666666666666521 112233333 6666666666643
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.93 E-value=8.5e-05 Score=65.61 Aligned_cols=62 Identities=18% Similarity=0.179 Sum_probs=32.0
Q ss_pred CchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCEEecC
Q 037941 76 PDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLS 144 (308)
Q Consensus 76 ~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~ 144 (308)
....|.++.+|+.+.+..+ +..++... +..+.+|+.+.+..+ ++.++ ..+..+..|+.+.+.
T Consensus 154 ~~~aF~~c~~L~~i~l~~~-~~~I~~~~-----F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 154 GDEAFATCESLEYVSLPDS-METLHNGL-----FSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTT-----TTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred chhhhcccCCCcEEecCCc-cceecccc-----ccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 3344566777777777543 23444443 556666666666544 33332 234444455544443
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.75 E-value=0.00084 Score=59.16 Aligned_cols=60 Identities=3% Similarity=-0.012 Sum_probs=29.2
Q ss_pred cCCCCcCceEEEeecCchhhhhhHHHHhcccceeecCCccchhhhhhccCCCCCCcccEEeccc
Q 037941 230 TGKYETSRTLKLKLDNRMYLEHGIKMLLRRTEDLHLDKLNGLQNVLHELDGEGFPRLKHLLVQN 293 (308)
Q Consensus 230 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 293 (308)
+..+.+|+.++|..+ ..........-+.+|+.+.+-. .++.+... ...++++|+.+.+.+
T Consensus 307 F~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~-aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 307 FAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS--SVTKIPES-AFSNCTALNNIEYSG 366 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT--TCCBCCGG-GGTTCTTCCEEEESS
T ss_pred ecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc--ccCEEhHh-HhhCCCCCCEEEECC
Confidence 445566776666432 1111122222236677777642 24443321 125667777777654
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.55 E-value=0.0004 Score=61.29 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=61.2
Q ss_pred chhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccc-hhhhCcCCCCEEecCCCCCCCccCcc
Q 037941 77 DLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQLTRLKLLDLSTCSKLKSIRPN 155 (308)
Q Consensus 77 ~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~ 155 (308)
...|.++..|+.+.+.... ..+.... +..+.+|+.+.+. +.++.++ ..+..+.+|+.+.+..+ ++.+...
T Consensus 258 ~~aF~~c~~L~~i~lp~~~-~~I~~~a-----F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~ 328 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSV-VSIGTGA-----FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDD 328 (394)
T ss_dssp TTTTTTCSSCCEEECCTTC-CEECTTT-----TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTT
T ss_pred cceeeecccccEEeccccc-ceecCcc-----cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHh
Confidence 3344566666666664332 2333332 5566666666664 3355554 34556667777776543 5556655
Q ss_pred hhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeec
Q 037941 156 VISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLIL 202 (308)
Q Consensus 156 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 202 (308)
.|..|.+|+.+.+..+ +... ....|.++.+|+.+.+.++
T Consensus 329 aF~~C~~L~~i~ip~s-v~~I-------~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 329 AFAGCEQLERIAIPSS-VTKI-------PESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCBC-------CGGGGTTCTTCCEEEESSC
T ss_pred HhhCCCCCCEEEECcc-cCEE-------hHhHhhCCCCCCEEEECCc
Confidence 5666777777766543 2211 1245666777777776654
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.17 E-value=0.0022 Score=56.10 Aligned_cols=137 Identities=15% Similarity=0.195 Sum_probs=89.3
Q ss_pred CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccc-hhhhCc
Q 037941 57 ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQL 135 (308)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l 135 (308)
.+.+++.+.+..+- . .+....|.++..|+.+.+..+ +..+.... +..+.+|+.+.+..+ ++.++ ..+..+
T Consensus 215 ~~~~l~~i~~~~~~-~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~a-----F~~~~~l~~i~l~~~-i~~i~~~aF~~c 285 (379)
T 4h09_A 215 YGKNLKKITITSGV-T-TLGDGAFYGMKALDEIAIPKN-VTSIGSFL-----LQNCTALKTLNFYAK-VKTVPYLLCSGC 285 (379)
T ss_dssp TCSSCSEEECCTTC-C-EECTTTTTTCSSCCEEEECTT-CCEECTTT-----TTTCTTCCEEEECCC-CSEECTTTTTTC
T ss_pred cccccceeeeccce-e-EEccccccCCccceEEEcCCC-ccEeCccc-----cceeehhcccccccc-ceeccccccccc
Confidence 67778888776542 2 344444567788888887654 55555543 677778888887543 55555 446778
Q ss_pred CCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhh
Q 037941 136 TRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELF 212 (308)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~ 212 (308)
++|+.+.+.++. ++.++...|.++.+|+.+.+..+ +... ....|.++.+|+.+.+..+ ++.+....+
T Consensus 286 ~~L~~i~l~~~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I-------~~~aF~~C~~L~~i~ip~~-v~~I~~~aF 352 (379)
T 4h09_A 286 SNLTKVVMDNSA-IETLEPRVFMDCVKLSSVTLPTA-LKTI-------QVYAFKNCKALSTISYPKS-ITLIESGAF 352 (379)
T ss_dssp TTCCEEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEE-------CTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred cccccccccccc-cceehhhhhcCCCCCCEEEcCcc-ccEE-------HHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence 888888887766 67777777888888888888644 2211 1246777888888777543 444444433
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.12 E-value=0.0045 Score=54.01 Aligned_cols=146 Identities=14% Similarity=0.071 Sum_probs=98.1
Q ss_pred CCCCccEEEecCCCCcCCCCchhhcCCCCccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCcCcccc-hhhhCc
Q 037941 57 ECPKLKLFFLFSEKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSHIEQLP-EEIGQL 135 (308)
Q Consensus 57 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~i~~l~-~~~~~l 135 (308)
.+..+..+.+..... .+....+.....|+.+.+..+ +..++... +..+.+|+.+.+..+ ++.+. ..+..+
T Consensus 192 ~~~~~~~~~~~~~~~--~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~-----f~~~~~L~~i~lp~~-v~~I~~~aF~~~ 262 (379)
T 4h09_A 192 AAKTGTEFTIPSTVK--TVTAYGFSYGKNLKKITITSG-VTTLGDGA-----FYGMKALDEIAIPKN-VTSIGSFLLQNC 262 (379)
T ss_dssp TTCCCSEEECCTTCC--EECTTTTTTCSSCSEEECCTT-CCEECTTT-----TTTCSSCCEEEECTT-CCEECTTTTTTC
T ss_pred cccccccccccccee--EEeecccccccccceeeeccc-eeEEcccc-----ccCCccceEEEcCCC-ccEeCcccccee
Confidence 455556665544332 223333456778888887543 44444443 677888999888765 66565 446778
Q ss_pred CCCCEEecCCCCCCCccCcchhcCCCCCceEEccCCcccccccCCcccchhhhhcCCCCCEEEeeeccCccccchhhc--
Q 037941 136 TRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTHWEVEGQNNASLAELNQLSRLTTLEMLILDAQVMPRELFS-- 213 (308)
Q Consensus 136 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~p~~~~~-- 213 (308)
.+|+.+.+..+ +..++...+..+.+|+.+.+.++.+.... ...|.++.+|+.+.+..+ ++.+....+.
T Consensus 263 ~~l~~i~l~~~--i~~i~~~aF~~c~~L~~i~l~~~~i~~I~-------~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 332 (379)
T 4h09_A 263 TALKTLNFYAK--VKTVPYLLCSGCSNLTKVVMDNSAIETLE-------PRVFMDCVKLSSVTLPTA-LKTIQVYAFKNC 332 (379)
T ss_dssp TTCCEEEECCC--CSEECTTTTTTCTTCCEEEECCTTCCEEC-------TTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred ehhcccccccc--ceeccccccccccccccccccccccceeh-------hhhhcCCCCCCEEEcCcc-ccEEHHHHhhCC
Confidence 88999988654 66777777888999999998877655222 257888899999998643 6667666655
Q ss_pred cCCceeEe
Q 037941 214 LGLERNKI 221 (308)
Q Consensus 214 ~~L~~l~i 221 (308)
.+|+.+.+
T Consensus 333 ~~L~~i~i 340 (379)
T 4h09_A 333 KALSTISY 340 (379)
T ss_dssp TTCCCCCC
T ss_pred CCCCEEEE
Confidence 67777655
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.50 E-value=0.0058 Score=44.73 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=15.3
Q ss_pred ccEEEccCCCCCCCCCCCCCcccccccccccEEeecCCc
Q 037941 86 LQVLSLNGFHFPSLPSTLGDVATVGVLKKLVIFSFRNSH 124 (308)
Q Consensus 86 L~~L~l~~~~~~~lp~~~~~~~~l~~l~~L~~L~l~~~~ 124 (308)
|++|+|++|.++.+|.+. +..+++|++|+|.+|.
T Consensus 33 l~~L~Ls~N~l~~l~~~~-----f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGL-----LDALPALRTAHLGANP 66 (130)
T ss_dssp CSEEECTTSCCSSCCTTT-----GGGCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCccChhh-----hhhccccCEEEecCCC
Confidence 444444444444444443 4444444444444443
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.31 E-value=0.0081 Score=43.94 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=19.2
Q ss_pred CCCEEecCCCCCCCccCcchhcCCCCCceEEccCCccc
Q 037941 137 RLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGNSFTH 174 (308)
Q Consensus 137 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 174 (308)
+|+.|++++|. ++.+|.+.+..+++|+.|++.+|...
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEecCCCee
Confidence 34555555554 44555544555555555555555443
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.18 E-value=0.0025 Score=50.21 Aligned_cols=16 Identities=6% Similarity=0.129 Sum_probs=7.4
Q ss_pred hhhcCCCCCEEEeeec
Q 037941 187 ELNQLSRLTTLEMLIL 202 (308)
Q Consensus 187 ~l~~l~~L~~L~l~~~ 202 (308)
.+..-+.|+.|+++.+
T Consensus 152 aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 152 AIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHCSSCCEEECCCC
T ss_pred HHHhCCCcCeEeccCC
Confidence 3344444555555443
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.64 E-value=0.019 Score=45.15 Aligned_cols=87 Identities=14% Similarity=0.126 Sum_probs=51.5
Q ss_pred cccccEEeecCC-cCc-----ccchhhhCcCCCCEEecCCCCCCCccCcc----hhcCCCCCceEEccCCcccccccCCc
Q 037941 112 LKKLVIFSFRNS-HIE-----QLPEEIGQLTRLKLLDLSTCSKLKSIRPN----VISNLPRLEELYMGNSFTHWEVEGQN 181 (308)
Q Consensus 112 l~~L~~L~l~~~-~i~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~ 181 (308)
-+.|++|+++++ .+. .+...+..-+.|+.|++++|. ++..... .+..-+.|++|+++.|.|.+.. .
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G---a 115 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPEL---L 115 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH---H
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCcCCHHH---H
Confidence 456777777664 554 344556666778888887776 4432211 1334467888888888777221 1
Q ss_pred ccchhhhhcCCCCCEEEeeec
Q 037941 182 NASLAELNQLSRLTTLEMLIL 202 (308)
Q Consensus 182 ~~~~~~l~~l~~L~~L~l~~~ 202 (308)
......+..-..|++|+++++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 222345555556888888754
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=48.87 E-value=21 Score=24.12 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=17.3
Q ss_pred hhCcCCCCEEecCCCCCCCccCcchhcCCCCCceEEccC
Q 037941 132 IGQLTRLKLLDLSTCSKLKSIRPNVISNLPRLEELYMGN 170 (308)
Q Consensus 132 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 170 (308)
+..+++|+.+.+-.+ ++.+....|..|.+|+.+.+.+
T Consensus 16 F~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcC
Confidence 444444554444432 3444444455555555555443
No 166
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=42.77 E-value=5.7 Score=36.26 Aligned_cols=18 Identities=6% Similarity=0.253 Sum_probs=15.5
Q ss_pred ChhHHHHHHHHhhhcccc
Q 037941 1 MHDVVHDIAVSTARDKHM 18 (308)
Q Consensus 1 mhd~v~d~~~~~~~~~~~ 18 (308)
|||+|||+|+.+++++++
T Consensus 456 mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 456 IDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CCHHHHHHHHTTSCTHHH
T ss_pred eChHHHHHHHHHHHHHHH
Confidence 899999999999876643
Done!