Query 037942
Match_columns 369
No_of_seqs 205 out of 2051
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 09:41:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037942.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037942hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 99.0 2.1E-10 7.1E-15 90.8 5.8 70 257-326 35-105 (137)
2 3b5d_A Multidrug transporter E 98.7 5.1E-08 1.8E-12 74.3 7.8 70 257-326 35-105 (110)
3 2i68_A Protein EMRE; transmemb 98.6 4.6E-08 1.6E-12 77.3 6.3 70 77-152 34-104 (137)
4 3b5d_A Multidrug transporter E 98.6 2.8E-07 9.7E-12 70.2 9.7 69 77-151 34-103 (110)
5 3rko_J NADH-quinone oxidoreduc 59.8 68 0.0023 25.9 12.3 30 293-322 127-156 (184)
6 3l1l_A Arginine/agmatine antip 48.0 39 0.0013 31.1 7.1 47 284-330 386-432 (445)
7 1pw4_A Glycerol-3-phosphate tr 45.3 1.7E+02 0.0058 26.2 18.9 36 13-49 95-131 (451)
8 2zxe_G FXYD10, phospholemman-l 31.9 23 0.0008 23.7 1.8 21 308-328 24-44 (74)
9 4djk_A Probable glutamate/gamm 24.8 3.4E+02 0.012 25.1 9.6 17 309-325 449-465 (511)
10 2jo1_A Phospholemman; FXYD1, N 20.3 29 0.00099 23.0 0.6 18 309-326 22-39 (72)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=99.04 E-value=2.1e-10 Score=90.76 Aligned_cols=70 Identities=21% Similarity=0.416 Sum_probs=53.7
Q ss_pred HHHHHhHHHHHHHHHHHhccCcceeeeh-hhHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHhhheecC
Q 037942 257 SGIVCSALAFCLIVWSIQRKGPLYVSVF-SPLLLVIVAIVSWALFQEKLFIGTAIGSVLIVTGLYAVLWGK 326 (369)
Q Consensus 257 ~gi~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~ 326 (369)
+++++++++++++.+++++.+++.+.++ ..+.|+++.+++++++||++++.+++|++++++|+++....+
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4667788999999999999999999999 899999999999999999999999999999999999987543
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.68 E-value=5.1e-08 Score=74.33 Aligned_cols=70 Identities=21% Similarity=0.416 Sum_probs=64.1
Q ss_pred HHHHHhHHHHHHHHHHHhccCcceeeeh-hhHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHhhheecC
Q 037942 257 SGIVCSALAFCLIVWSIQRKGPLYVSVF-SPLLLVIVAIVSWALFQEKLFIGTAIGSVLIVTGLYAVLWGK 326 (369)
Q Consensus 257 ~gi~~~~~~~~~~~~a~~~~~~~~~s~~-~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~ 326 (369)
.++++..++++++.+++++.+.+.+.++ ..+.|+++.+++++++||++++.+++|..+++.|+++....+
T Consensus 35 ~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4556778999999999999999999888 799999999999999999999999999999999999886543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.63 E-value=4.6e-08 Score=77.29 Aligned_cols=70 Identities=11% Similarity=0.197 Sum_probs=53.8
Q ss_pred HHHHhhhHHHHHHHHHHhcccchhhHHhh-hhhhHHHHHHHHHHhhhccccccccCCccceehhhhhhhhhhhhhhh
Q 037942 77 LCSVTGATGNQVLYFVGLENSTPTIGCAL-TNILPAITFVLAVIFRQEYVAIKTKPGQAKVFGTIICVGGAMVLSFY 152 (369)
Q Consensus 77 ~~g~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~l~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~~ 152 (369)
+.+++.+++++.++..++++.|++.+..+ .++.|+++.++++++++|++++.+ ++|++++++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhcC
Confidence 45666678999999999999999999999 899999999999999999999999 99999999999999753
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.59 E-value=2.8e-07 Score=70.16 Aligned_cols=69 Identities=12% Similarity=0.199 Sum_probs=63.5
Q ss_pred HHHHhhhHHHHHHHHHHhcccchhhHHhh-hhhhHHHHHHHHHHhhhccccccccCCccceehhhhhhhhhhhhhh
Q 037942 77 LCSVTGATGNQVLYFVGLENSTPTIGCAL-TNILPAITFVLAVIFRQEYVAIKTKPGQAKVFGTIICVGGAMVLSF 151 (369)
Q Consensus 77 ~~g~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pi~~~ll~~l~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~ 151 (369)
+.+.+.+.+++.++..++++.|.+.+..+ ..+.|+++.+++++++||++++.+ ++|+.+.+.|++++..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 45566668899999999999999999998 899999999999999999999998 9999999999999874
No 5
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=59.78 E-value=68 Score=25.93 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=22.5
Q ss_pred HHHHHHHhcCccchhhhHHHHHHHHHHhhh
Q 037942 293 AIVSWALFQEKLFIGTAIGSVLIVTGLYAV 322 (369)
Q Consensus 293 ~l~~~~~~~e~~~~~~~~G~~li~~gv~l~ 322 (369)
--+|..++++-.-+.+.++..+.++=+..+
T Consensus 127 ~~iG~~Lft~Y~lpFElaSvlLLvAmIGAI 156 (184)
T 3rko_J 127 KAVGITLFGPYVLAVELASMLLLAGLVVAF 156 (184)
T ss_dssp HHHHHHHTTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999988875433333
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=48.01 E-value=39 Score=31.09 Aligned_cols=47 Identities=4% Similarity=-0.234 Sum_probs=25.9
Q ss_pred hhhHHHHHHHHHHHHHhcCccchhhhHHHHHHHHHHhhheecCCCCC
Q 037942 284 FSPLLLVIVAIVSWALFQEKLFIGTAIGSVLIVTGLYAVLWGKDKEL 330 (369)
Q Consensus 284 ~~~~~pv~~~l~~~~~~~e~~~~~~~~G~~li~~gv~l~~~~~~~~~ 330 (369)
....-++++.++..+.+-.......+.|..+++.|+.++.+.++|++
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 386 AYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp TTHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred hhHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34445555555544443222223455688888888877766555443
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=45.28 E-value=1.7e+02 Score=26.20 Aligned_cols=36 Identities=6% Similarity=-0.144 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHH
Q 037942 13 MVTVQLGYAGMNFTSKLALD-SGMKPLVLVAYRQMFAT 49 (369)
Q Consensus 13 ~l~~~~~~g~~~~~~k~~~~-~g~~~~~~~~~r~~~~~ 49 (369)
++.+.++++...+..-.... . -+...+...|.+.+.
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~ 131 (451)
T 1pw4_A 95 LPAGLILAAAVMLFMGFVPWAT-SSIAVMFVLLFLCGW 131 (451)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHH-SSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhcc-ccHHHHHHHHHHHHH
Confidence 33444455554444433100 1 234455556666554
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=31.88 E-value=23 Score=23.69 Aligned_cols=21 Identities=33% Similarity=0.494 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHhhheecCCC
Q 037942 308 TAIGSVLIVTGLYAVLWGKDK 328 (369)
Q Consensus 308 ~~~G~~li~~gv~l~~~~~~~ 328 (369)
.+++.++.++|++++..+|-|
T Consensus 24 LifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 24 LIVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHHTTTC--
T ss_pred chhHHHHHHHHHHHHHcCccc
Confidence 346677778888877666543
No 9
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=24.76 E-value=3.4e+02 Score=25.07 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=7.7
Q ss_pred hHHHHHHHHHHhhheec
Q 037942 309 AIGSVLIVTGLYAVLWG 325 (369)
Q Consensus 309 ~~G~~li~~gv~l~~~~ 325 (369)
..+..+++.++....+.
T Consensus 449 ~~~~~~~~~~i~~~~~~ 465 (511)
T 4djk_A 449 LVVSFLVVLALPFILYA 465 (511)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444445444433
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=20.31 E-value=29 Score=23.01 Aligned_cols=18 Identities=28% Similarity=0.543 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHhhheecC
Q 037942 309 AIGSVLIVTGLYAVLWGK 326 (369)
Q Consensus 309 ~~G~~li~~gv~l~~~~~ 326 (369)
+++.++.++|++++...+
T Consensus 22 ifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 455666677777665443
Done!