Query 037942
Match_columns 369
No_of_seqs 205 out of 2051
Neff 9.4
Searched_HMMs 13730
Date Mon Mar 25 09:41:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037942.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037942hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 59.5 46 0.0033 27.7 20.6 15 266-280 362-376 (447)
2 d1iwga8 f.35.1.1 (A:513-566,A: 24.7 1.2E+02 0.0088 23.0 7.7 28 291-318 96-123 (222)
3 d2e74g1 f.23.26.1 (G:9-35) Pet 24.7 37 0.0027 16.1 2.7 19 184-202 2-20 (27)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 18.7 2.2E+02 0.016 22.9 14.4 17 195-211 70-86 (447)
5 d2axtl1 f.23.31.1 (L:1-37) Pho 5.2 2.4E+02 0.017 14.4 2.7 21 181-201 15-35 (37)
6 d1u7ga_ f.44.1.1 (A:) Ammonium 4.9 7.6E+02 0.055 20.0 20.1 48 186-235 282-330 (383)
7 d1wpga4 f.33.1.1 (A:1-124,A:24 4.3 8.9E+02 0.065 19.8 13.0 64 34-97 264-337 (472)
8 d1q90r_ f.23.12.1 (R:) ISP sub 4.3 3.1E+02 0.022 14.4 2.9 27 66-92 6-32 (39)
9 d2axtt1 f.23.34.1 (T:1-30) Pho 4.3 2.5E+02 0.018 13.3 2.8 14 291-304 14-27 (30)
10 d2nr9a1 f.51.1.1 (A:4-192) Glp 3.4 7.1E+02 0.051 17.3 12.3 21 181-201 160-180 (189)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=59.52 E-value=46 Score=27.66 Aligned_cols=15 Identities=0% Similarity=-0.088 Sum_probs=7.1
Q ss_pred HHHHHHHHhccCcce
Q 037942 266 FCLIVWSIQRKGPLY 280 (369)
Q Consensus 266 ~~~~~~a~~~~~~~~ 280 (369)
...+....+..+...
T Consensus 362 ~~~~~~~~~~~p~~~ 376 (447)
T d1pw4a_ 362 MLIGLHALELAPKKA 376 (447)
T ss_dssp HHHHHHHHHTSCTTH
T ss_pred HHHHHHHHHHcCHHH
Confidence 334444555555443
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=24.72 E-value=1.2e+02 Score=22.97 Aligned_cols=28 Identities=11% Similarity=-0.055 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCccchhhhHHHHHHHHH
Q 037942 291 IVAIVSWALFQEKLFIGTAIGSVLIVTG 318 (369)
Q Consensus 291 ~~~l~~~~~~~e~~~~~~~~G~~li~~g 318 (369)
.+.+.+..+.+.+++....+|.++.+.-
T Consensus 96 ~~~~~~l~~~g~~~~~~~~~g~i~l~Gi 123 (222)
T d1iwga8 96 IGALLAATFRGLTNDVYFQVGLLTTIGL 123 (222)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCchhhhhcccccchhhh
Confidence 4455666678999999888887775544
No 3
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=24.65 E-value=37 Score=16.10 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=14.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 037942 184 ILGSIAIIASSISWAAWVI 202 (369)
Q Consensus 184 ~~G~~~~l~a~~~~a~~~v 202 (369)
..|.++.-++++.|+.|.-
T Consensus 2 vlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHHH
Confidence 3688888888888888753
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=18.70 E-value=2.2e+02 Score=22.86 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHhhhhC
Q 037942 195 ISWAAWVIIQTKLSKKF 211 (369)
Q Consensus 195 ~~~a~~~v~~~~~~~~~ 211 (369)
+.+++.....-++.+++
T Consensus 70 ~~~~~~~~~~G~l~Dr~ 86 (447)
T d1pw4a_ 70 IAYGFSKFIMGSVSDRS 86 (447)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 33344444444444443
No 5
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.19 E-value=2.4e+02 Score=14.38 Aligned_cols=21 Identities=19% Similarity=0.515 Sum_probs=14.0
Q ss_pred ccchhHHHHHHHHHHHHHHHH
Q 037942 181 SNLILGSIAIIASSISWAAWV 201 (369)
Q Consensus 181 ~~~~~G~~~~l~a~~~~a~~~ 201 (369)
.+--+|.++.+.-++.++-|.
T Consensus 15 tsLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 15 TSLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 344577777777777776654
No 6
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=4.94 E-value=7.6e+02 Score=19.95 Aligned_cols=48 Identities=10% Similarity=0.194 Sum_probs=24.5
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHhhhhCCCchHHHHHHHHHHHHHHHHHHHH
Q 037942 186 GSIAIIASS-ISWAAWVIIQTKLSKKFPAPYTCTTLMCLISSIMCSVIGLI 235 (369)
Q Consensus 186 G~~~~l~a~-~~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 235 (369)
..+...+++ +++-.+..+.+|+ +..||..........+..-.+...++
T Consensus 282 A~~iG~i~g~i~~~~~~~l~~~~--~iDD~~~~~~vHg~~Gi~G~l~~glf 330 (383)
T d1u7ga_ 282 ALIIGVVAGLAGLWGVTMLKRLL--RVDDPCDVFGVHGVCGIVGCIMTGIF 330 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--CSCCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHhhc--ccccccceEeehhhhHHHHHHHHHHh
Confidence 345554444 3343444444443 33577777666666555555544444
No 7
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=4.27 E-value=8.9e+02 Score=19.84 Aligned_cols=64 Identities=11% Similarity=0.098 Sum_probs=35.5
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHH------HhhhcCC----CCCCHHHHHHHHHHHHhhhHHHHHHHHHHhccc
Q 037942 34 GMKPLVLVAYRQMFATLATIPFAY------FIEWKTR----PKITWPILFQIFLCSVTGATGNQVLYFVGLENS 97 (369)
Q Consensus 34 g~~~~~~~~~r~~~~~l~l~~~~~------~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~al~~~ 97 (369)
-++|.++.+.-++.-.+..+.+.. .-+++++ +.++++.+......|..........+++...+.
T Consensus 264 pl~~~qILwinli~d~lpaiaL~~ep~d~~iM~~~Pr~~~~~li~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~ 337 (472)
T d1wpga4 264 ALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGAATVGAAAWWFMYA 337 (472)
T ss_dssp SCCHHHHHHHHHTTTHHHHHHHTTCCCCSGGGGSCCCCTTCCSSCTHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cccHHHHHHHHHHhHHHHHHHHhcCCCchhhhcCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367899888887766554444322 1111111 124566666666666555455555666665553
No 8
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.27 E-value=3.1e+02 Score=14.43 Aligned_cols=27 Identities=7% Similarity=0.042 Sum_probs=15.6
Q ss_pred CCCHHHHHHHHHHHHhhhHHHHHHHHH
Q 037942 66 KITWPILFQIFLCSVTGATGNQVLYFV 92 (369)
Q Consensus 66 ~~~~~~~~~~~~~g~~~~~~~~~~~~~ 92 (369)
...+|+...++..|.........++=+
T Consensus 6 DMgrR~~MNLll~G~~~~~~~g~l~py 32 (39)
T d1q90r_ 6 DMNKRNIMNLILAGGAGLPITTLALGY 32 (39)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHhccchhhhhhccce
Confidence 345677777777776664444444333
No 9
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.26 E-value=2.5e+02 Score=13.31 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=6.7
Q ss_pred HHHHHHHHHhcCcc
Q 037942 291 IVAIVSWALFQEKL 304 (369)
Q Consensus 291 ~~~l~~~~~~~e~~ 304 (369)
++..+=.++++|+|
T Consensus 14 i~lfffaiffrepp 27 (30)
T d2axtt1 14 IALFFFAIFFREPP 27 (30)
T ss_dssp HHHHHHHHHTSCCC
T ss_pred HHHHHHHHHhcCCC
Confidence 33333344556655
No 10
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}
Probab=3.44 E-value=7.1e+02 Score=17.34 Aligned_cols=21 Identities=10% Similarity=0.012 Sum_probs=13.9
Q ss_pred ccchhHHHHHHHHHHHHHHHH
Q 037942 181 SNLILGSIAIIASSISWAAWV 201 (369)
Q Consensus 181 ~~~~~G~~~~l~a~~~~a~~~ 201 (369)
..+..|.+.++++++.++...
T Consensus 160 ~v~~~aHl~G~l~G~~~g~~~ 180 (189)
T d2nr9a1 160 EMGNAAHISGLIVGLIWGFID 180 (189)
T ss_dssp TTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 344567777888877776544
Done!