BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037945
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
pdb|1SJJ|B Chain B, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha-
Actinin
Length = 863
Score = 29.6 bits (65), Expect = 1.3, Method: Composition-based stats.
Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
Query: 9 MDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHE 68
+DY P ++ C +C D+L +L + R+ + T + +D + +
Sbjct: 440 LDYYDSP---SVNARCQKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAP 496
Query: 69 VNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCFPGSWSSRDK 113
N W+E A L++ +I+H EEIQ F + DK
Sbjct: 497 FNNWMEGAMEDLQDT-FIVHT-IEEIQGLTTAHEQFKATLPDADK 539
>pdb|2IJO|B Chain B, Crystal Structure Of The West Nile Virus Ns2b-Ns3 Protease
Complexed With Bovine Pancreatic Trypsin Inhibitor
Length = 192
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 101 KTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSI 160
+ C+ G W + K + +++ VE GR + V KP E IG V LD
Sbjct: 76 RLCYGGPWQLQHKWNGQDEVQMIVVEP--GR-NVKNVQTKPGVFKTPEGEIG-AVTLDFP 131
Query: 161 ISEVWRCIEDHNEKVIGLYGMG 182
I D N VIGLYG G
Sbjct: 132 TGTSGSPIVDKNGDVIGLYGNG 153
>pdb|2GGV|B Chain B, Crystal Structure Of The West Nile Virus Ns2b-Ns3
Protease, His51ala Mutant
Length = 185
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 101 KTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSI 160
+ C+ G W + K + +++ VE GR + V KP E IG V LD
Sbjct: 75 RLCYGGPWQLQHKWNGQDEVQMIVVEP--GR-NVKNVQTKPGVFKTPEGEIG-AVTLDFP 130
Query: 161 ISEVWRCIEDHNEKVIGLYGMG 182
I D N VIGLYG G
Sbjct: 131 TGTSGSPIVDKNGDVIGLYGNG 152
>pdb|3LM3|A Chain A, Crystal Structure Of A Putative Glycoside
HydrolaseDEACETYLASE (Bdi_3119) From Parabacteroides
Distasonis At 1.44 A Resolution
Length = 449
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 73 LESAKIMLREV-DYILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGR 131
LE + RE+ DY++ + + FP + R+++ +E SE I + + +G
Sbjct: 81 LEDGRKNYREIRDYVVECQKKYGDEVTYFPGYFPAXYLPRERVNREXSEAIEIISKXVGN 140
Query: 132 GH 133
G+
Sbjct: 141 GY 142
>pdb|3NXL|A Chain A, Crystal Structure Of Glucarate Dehydratase From
Burkholderia Cepacia Complexed With Magnesium
pdb|3NXL|B Chain B, Crystal Structure Of Glucarate Dehydratase From
Burkholderia Cepacia Complexed With Magnesium
pdb|3NXL|C Chain C, Crystal Structure Of Glucarate Dehydratase From
Burkholderia Cepacia Complexed With Magnesium
pdb|3NXL|D Chain D, Crystal Structure Of Glucarate Dehydratase From
Burkholderia Cepacia Complexed With Magnesium
Length = 475
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 90 GDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAVVAEKP 141
G +E + K CFP + ++ D G + ++ VA+ G+GH AE P
Sbjct: 233 GADEXEAIAAIKACFPDARATLDPNGAWSLDEAVAL--CRGQGHLLAYAEDP 282
>pdb|2FP7|B Chain B, West Nile Virus Ns2bNS3PROTEASE IN COMPLEX WITH
BZ-Nle-Lys-Arg-Arg-H
Length = 172
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 101 KTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSI 160
+ C+ G W + K +++ VE G+ + V KP E IG V LD
Sbjct: 61 RLCYGGPWKLQHKWNGHDEVQMIVVEP--GK-NVKNVQTKPGVFKTPEGEIG-AVTLDYP 116
Query: 161 ISEVWRCIEDHNEKVIGLYGMG 182
I D N VIGLYG G
Sbjct: 117 TGTSGSPIVDKNGDVIGLYGNG 138
>pdb|3E90|B Chain B, West Nile Vi Rus Ns2b-Ns3protease In Complexed With
Inhibitor Naph-Kkr-H
pdb|3E90|D Chain D, West Nile Vi Rus Ns2b-Ns3protease In Complexed With
Inhibitor Naph-Kkr-H
Length = 198
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 101 KTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAVVAEKPPRAPVEERPIGKTVGLDSI 160
+ C+ G W + K + +++ VE G+ + V KP E IG V LD
Sbjct: 80 RLCYGGPWKLQHKWNGQDEVQMIVVEP--GK-NVKNVRTKPGVFKTPEGEIG-AVTLDFP 135
Query: 161 ISEVWRCIEDHNEKVIGLYGMG 182
I D N VIGLYG G
Sbjct: 136 TGTSGSPIVDKNGDVIGLYGNG 157
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.140 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,072,372
Number of Sequences: 62578
Number of extensions: 234837
Number of successful extensions: 559
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 550
Number of HSP's gapped (non-prelim): 23
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)