Query 037945
Match_columns 206
No_of_seqs 159 out of 1846
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 05:59:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037945.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037945hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 99.9 1.3E-20 2.8E-25 168.6 15.3 192 1-206 1-212 (889)
2 PLN03210 Resistant to P. syrin 98.9 1.2E-08 2.7E-13 95.5 9.7 47 152-198 184-232 (1153)
3 COG0488 Uup ATPase components 98.4 1.5E-07 3.3E-12 80.8 3.9 58 144-203 320-378 (530)
4 COG1120 FepC ABC-type cobalami 98.4 6.3E-08 1.4E-12 75.5 0.4 50 152-203 9-58 (258)
5 COG1126 GlnQ ABC-type polar am 98.3 1.6E-07 3.4E-12 70.8 0.6 52 150-203 7-58 (240)
6 COG3842 PotA ABC-type spermidi 98.3 2.3E-07 5.1E-12 75.5 0.6 56 146-203 6-61 (352)
7 COG1121 ZnuC ABC-type Mn/Zn tr 98.2 1.8E-07 3.8E-12 72.7 -0.2 49 152-202 11-59 (254)
8 COG1116 TauB ABC-type nitrate/ 98.2 2.6E-07 5.6E-12 71.2 0.5 50 152-203 10-59 (248)
9 KOG0927 Predicted transporter 98.2 6.8E-06 1.5E-10 69.6 8.4 60 142-203 386-446 (614)
10 PF05496 RuvB_N: Holliday junc 98.2 3.9E-06 8.6E-11 64.0 6.3 49 150-198 22-75 (233)
11 PRK13543 cytochrome c biogenes 98.2 4.5E-07 9.8E-12 69.5 0.4 50 152-203 18-67 (214)
12 COG4559 ABC-type hemin transpo 98.2 7.1E-07 1.5E-11 67.2 1.2 47 155-203 11-57 (259)
13 COG1124 DppF ABC-type dipeptid 98.1 7.6E-07 1.7E-11 68.2 1.3 50 152-203 10-63 (252)
14 PRK11247 ssuB aliphatic sulfon 98.1 4E-07 8.7E-12 71.8 -0.6 51 151-203 18-68 (257)
15 cd00009 AAA The AAA+ (ATPases 98.1 6.8E-06 1.5E-10 58.1 5.7 42 156-197 2-43 (151)
16 COG1134 TagH ABC-type polysacc 98.1 9.9E-07 2.2E-11 67.7 1.3 42 160-203 42-83 (249)
17 cd03225 ABC_cobalt_CbiO_domain 98.1 5E-07 1.1E-11 69.0 -0.3 42 160-203 16-57 (211)
18 cd03263 ABC_subfamily_A The AB 98.1 5.8E-07 1.3E-11 69.1 0.1 42 160-203 17-58 (220)
19 PRK10247 putative ABC transpor 98.1 6.8E-07 1.5E-11 69.0 0.4 48 154-203 16-63 (225)
20 TIGR02315 ABC_phnC phosphonate 98.1 8.4E-07 1.8E-11 69.2 0.9 42 160-203 17-58 (243)
21 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.1 4.9E-07 1.1E-11 69.4 -0.4 42 160-203 19-60 (218)
22 COG1131 CcmA ABC-type multidru 98.1 5.2E-07 1.1E-11 72.4 -1.0 52 150-203 9-61 (293)
23 COG4987 CydC ABC-type transpor 98.1 3E-06 6.4E-11 71.7 3.4 56 146-203 337-394 (573)
24 cd03257 ABC_NikE_OppD_transpor 98.1 8.7E-07 1.9E-11 68.4 0.0 42 160-203 20-61 (228)
25 cd03267 ABC_NatA_like Similar 98.0 8.5E-07 1.9E-11 69.0 -0.2 42 160-203 36-77 (236)
26 cd03256 ABC_PhnC_transporter A 98.0 9.1E-07 2E-11 68.9 -0.2 42 160-203 16-57 (241)
27 cd03296 ABC_CysA_sulfate_impor 98.0 7.7E-07 1.7E-11 69.4 -0.8 42 160-203 17-58 (239)
28 TIGR02673 FtsE cell division A 98.0 2.3E-06 5E-11 65.5 1.7 42 160-203 17-58 (214)
29 PRK13638 cbiO cobalt transport 98.0 1.1E-06 2.3E-11 69.9 -0.1 43 159-203 15-57 (271)
30 cd03293 ABC_NrtD_SsuB_transpor 98.0 8.1E-07 1.8E-11 68.3 -1.0 42 160-203 19-60 (220)
31 PRK13540 cytochrome c biogenes 98.0 8.7E-07 1.9E-11 67.2 -0.9 42 160-203 16-57 (200)
32 cd03294 ABC_Pro_Gly_Bertaine T 98.0 1.1E-06 2.4E-11 69.8 -0.4 42 160-203 39-80 (269)
33 COG3839 MalK ABC-type sugar tr 98.0 1.3E-06 2.9E-11 70.8 0.1 50 152-203 10-59 (338)
34 cd03258 ABC_MetN_methionine_tr 98.0 1.5E-06 3.2E-11 67.4 0.4 42 160-203 20-61 (233)
35 TIGR03864 PQQ_ABC_ATP ABC tran 98.0 8.8E-07 1.9E-11 68.9 -0.9 42 160-203 16-57 (236)
36 PRK11264 putative amino-acid A 98.0 1.4E-06 3E-11 68.3 0.1 42 160-203 18-59 (250)
37 TIGR02903 spore_lon_C ATP-depe 98.0 0.00031 6.8E-09 62.1 14.7 47 152-198 154-200 (615)
38 PRK13536 nodulation factor exp 98.0 6E-07 1.3E-11 73.6 -2.1 52 150-203 46-97 (340)
39 TIGR01288 nodI ATP-binding ABC 98.0 1.1E-06 2.4E-11 71.0 -0.5 48 154-203 13-60 (303)
40 PRK11248 tauB taurine transpor 98.0 1.5E-06 3.2E-11 68.5 0.2 42 160-203 16-57 (255)
41 COG2274 SunT ABC-type bacterio 98.0 2.8E-06 6.2E-11 75.5 2.0 55 147-203 473-529 (709)
42 COG4555 NatA ABC-type Na+ tran 98.0 4.3E-06 9.2E-11 62.6 2.6 49 153-203 9-58 (245)
43 PRK13538 cytochrome c biogenes 98.0 1.3E-06 2.8E-11 66.4 -0.1 42 160-203 16-57 (204)
44 PRK10636 putative ABC transpor 98.0 1.2E-06 2.6E-11 77.6 -0.4 50 152-203 8-57 (638)
45 TIGR00960 3a0501s02 Type II (G 98.0 5.4E-06 1.2E-10 63.5 3.2 42 160-203 18-59 (216)
46 COG0410 LivF ABC-type branched 98.0 1.4E-06 3E-11 66.3 -0.1 50 152-203 10-59 (237)
47 PRK13537 nodulation ABC transp 98.0 1.2E-06 2.7E-11 70.8 -0.4 51 151-203 13-63 (306)
48 COG1125 OpuBA ABC-type proline 98.0 2E-06 4.4E-11 66.5 0.8 52 150-203 6-57 (309)
49 PRK10575 iron-hydroxamate tran 98.0 1.2E-06 2.5E-11 69.4 -0.5 48 154-203 20-67 (265)
50 PRK10584 putative ABC transpor 98.0 2.1E-06 4.5E-11 66.4 0.9 42 160-203 25-66 (228)
51 cd03266 ABC_NatA_sodium_export 98.0 1.5E-06 3.2E-11 66.8 -0.0 42 160-203 20-61 (218)
52 PRK14242 phosphate transporter 98.0 1.6E-06 3.4E-11 68.2 0.1 45 151-197 12-56 (253)
53 PRK11701 phnK phosphonate C-P 98.0 1.3E-06 2.9E-11 68.8 -0.3 42 160-203 21-62 (258)
54 PRK09544 znuC high-affinity zi 98.0 8.7E-07 1.9E-11 69.6 -1.4 41 161-203 20-60 (251)
55 PRK11124 artP arginine transpo 98.0 1.7E-06 3.8E-11 67.5 0.2 41 160-202 17-57 (242)
56 COG1127 Ttg2A ABC-type transpo 98.0 2.2E-06 4.8E-11 65.7 0.7 57 145-203 8-64 (263)
57 smart00763 AAA_PrkA PrkA AAA d 98.0 4.8E-05 1E-09 62.2 8.4 46 153-198 52-103 (361)
58 PRK14250 phosphate ABC transpo 98.0 1.8E-06 4E-11 67.4 0.2 42 160-203 18-59 (241)
59 COG4107 PhnK ABC-type phosphon 98.0 3.4E-06 7.4E-11 61.8 1.6 51 150-202 11-61 (258)
60 PRK11831 putative ABC transpor 97.9 1.1E-06 2.3E-11 69.8 -1.3 42 160-203 22-63 (269)
61 PRK10636 putative ABC transpor 97.9 2E-06 4.4E-11 76.1 0.4 50 152-203 319-368 (638)
62 PRK13631 cbiO cobalt transport 97.9 2.1E-06 4.7E-11 69.8 0.4 42 160-203 41-82 (320)
63 PRK13548 hmuV hemin importer A 97.9 2.1E-06 4.4E-11 67.8 0.2 42 160-203 17-58 (258)
64 PRK13539 cytochrome c biogenes 97.9 1.2E-06 2.6E-11 66.8 -1.0 42 160-203 17-58 (207)
65 TIGR02211 LolD_lipo_ex lipopro 97.9 7.4E-06 1.6E-10 63.0 3.2 42 160-203 20-61 (221)
66 KOG0066 eIF2-interacting prote 97.9 7.2E-06 1.6E-10 68.1 3.2 44 156-201 598-641 (807)
67 PRK10895 lipopolysaccharide AB 97.9 1.7E-06 3.7E-11 67.5 -0.5 42 160-203 18-59 (241)
68 COG3638 ABC-type phosphate/pho 97.9 2.1E-06 4.6E-11 65.6 0.0 49 152-202 10-59 (258)
69 cd03292 ABC_FtsE_transporter F 97.9 7.2E-06 1.6E-10 62.7 3.0 42 160-203 16-57 (214)
70 TIGR02323 CP_lyasePhnK phospho 97.9 2.4E-06 5.1E-11 67.2 0.3 42 160-203 18-59 (253)
71 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.9 1.6E-06 3.6E-11 66.9 -0.7 46 155-202 32-77 (224)
72 TIGR03873 F420-0_ABC_ATP propo 97.9 1.9E-06 4.1E-11 67.9 -0.4 42 160-203 16-57 (256)
73 TIGR02324 CP_lyasePhnL phospho 97.9 4E-06 8.6E-11 64.7 1.2 42 160-203 23-64 (224)
74 PRK10938 putative molybdenum t 97.9 3.2E-06 6.9E-11 72.7 0.7 48 154-203 12-59 (490)
75 cd03295 ABC_OpuCA_Osmoprotecti 97.9 2.5E-06 5.4E-11 66.6 0.1 41 161-203 17-57 (242)
76 PRK11300 livG leucine/isoleuci 97.9 1.8E-06 4E-11 67.8 -0.8 41 160-202 20-60 (255)
77 COG2884 FtsE Predicted ATPase 97.9 6.8E-06 1.5E-10 60.9 2.2 44 158-203 15-58 (223)
78 PRK11147 ABC transporter ATPas 97.9 2.3E-06 5E-11 75.8 -0.3 50 152-203 326-375 (635)
79 cd03223 ABCD_peroxisomal_ALDP 97.9 9.9E-06 2.2E-10 59.6 3.1 42 160-203 16-57 (166)
80 TIGR03411 urea_trans_UrtD urea 97.9 2.1E-06 4.5E-11 67.0 -0.6 42 160-203 17-58 (242)
81 PRK09493 glnQ glutamine ABC tr 97.9 3E-06 6.4E-11 66.1 0.2 41 160-202 16-56 (240)
82 COG1136 SalX ABC-type antimicr 97.9 5.7E-06 1.2E-10 63.4 1.7 42 160-203 20-61 (226)
83 PRK11629 lolD lipoprotein tran 97.9 9.3E-06 2E-10 63.0 2.9 42 160-203 24-65 (233)
84 PRK10908 cell division protein 97.9 4.4E-06 9.4E-11 64.4 1.0 42 160-203 17-58 (222)
85 PRK11614 livF leucine/isoleuci 97.9 2.2E-06 4.9E-11 66.6 -0.6 42 160-203 20-61 (237)
86 cd03228 ABCC_MRP_Like The MRP 97.9 5E-06 1.1E-10 61.5 1.2 42 160-203 17-58 (171)
87 cd03230 ABC_DR_subfamily_A Thi 97.9 1.1E-05 2.4E-10 59.7 3.1 42 160-203 15-56 (173)
88 PRK11819 putative ABC transpor 97.9 2E-06 4.3E-11 75.1 -1.1 50 152-203 13-63 (556)
89 PRK09270 nucleoside triphospha 97.9 3.7E-05 8E-10 59.6 6.1 40 161-200 20-60 (229)
90 PRK14246 phosphate ABC transpo 97.9 2.7E-06 5.9E-11 67.1 -0.2 48 153-202 18-65 (257)
91 cd03246 ABCC_Protease_Secretio 97.9 1.4E-05 3.1E-10 59.2 3.6 42 160-203 17-58 (173)
92 TIGR00972 3a0107s01c2 phosphat 97.9 3.6E-06 7.7E-11 65.9 0.4 39 160-200 16-54 (247)
93 cd03233 ABC_PDR_domain1 The pl 97.9 2E-06 4.4E-11 65.3 -1.0 37 160-198 22-58 (202)
94 COG4167 SapF ABC-type antimicr 97.9 5.6E-06 1.2E-10 61.1 1.4 42 160-203 28-69 (267)
95 COG4618 ArpD ABC-type protease 97.9 1.3E-05 2.8E-10 67.5 3.6 44 158-203 349-392 (580)
96 PRK11147 ABC transporter ATPas 97.9 2.3E-06 5E-11 75.8 -0.8 49 153-203 11-59 (635)
97 PRK13649 cbiO cobalt transport 97.9 3.6E-06 7.9E-11 67.2 0.3 42 160-203 22-63 (280)
98 cd03216 ABC_Carb_Monos_I This 97.9 1.2E-05 2.6E-10 59.0 3.1 42 160-203 15-56 (163)
99 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 1.2E-05 2.5E-10 57.8 2.9 36 166-203 21-56 (144)
100 COG0488 Uup ATPase components 97.9 4.1E-06 8.8E-11 72.2 0.5 51 151-203 9-59 (530)
101 PRK15112 antimicrobial peptide 97.8 5.1E-06 1.1E-10 65.9 1.0 42 160-203 28-69 (267)
102 PRK13636 cbiO cobalt transport 97.8 2.7E-06 5.8E-11 68.1 -0.6 42 160-203 21-62 (283)
103 PRK10744 pstB phosphate transp 97.8 3.2E-06 6.9E-11 66.8 -0.2 43 154-198 22-64 (260)
104 cd03244 ABCC_MRP_domain2 Domai 97.8 6.2E-06 1.4E-10 63.4 1.4 42 160-203 19-60 (221)
105 PRK10619 histidine/lysine/argi 97.8 2.3E-06 4.9E-11 67.5 -1.1 42 160-203 20-61 (257)
106 cd03247 ABCC_cytochrome_bd The 97.8 1.5E-05 3.2E-10 59.3 3.4 42 160-203 17-58 (178)
107 PRK13641 cbiO cobalt transport 97.8 4.2E-06 9.2E-11 67.0 0.5 42 160-203 22-63 (287)
108 TIGR02769 nickel_nikE nickel i 97.8 6.1E-06 1.3E-10 65.3 1.4 42 160-203 26-67 (265)
109 PRK14248 phosphate ABC transpo 97.8 3.7E-06 8.1E-11 66.7 0.1 47 149-197 25-71 (268)
110 cd03254 ABCC_Glucan_exporter_l 97.8 6.6E-06 1.4E-10 63.6 1.5 42 160-203 18-59 (229)
111 PRK10253 iron-enterobactin tra 97.8 4.3E-06 9.3E-11 66.2 0.5 42 159-202 21-62 (265)
112 PRK11231 fecE iron-dicitrate t 97.8 3.7E-06 8E-11 66.2 0.1 41 160-202 17-57 (255)
113 COG2255 RuvB Holliday junction 97.8 3.1E-05 6.7E-10 60.9 5.1 49 151-199 25-78 (332)
114 cd03290 ABCC_SUR1_N The SUR do 97.8 4.7E-06 1E-10 64.0 0.6 42 160-203 16-57 (218)
115 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.8 5.1E-06 1.1E-10 64.7 0.8 42 160-203 18-59 (238)
116 cd03248 ABCC_TAP TAP, the Tran 97.8 6.8E-06 1.5E-10 63.4 1.4 42 160-203 29-70 (226)
117 PRK15439 autoinducer 2 ABC tra 97.8 2.8E-06 6E-11 73.4 -0.9 51 151-203 17-67 (510)
118 cd03245 ABCC_bacteriocin_expor 97.8 7E-06 1.5E-10 63.1 1.4 42 160-203 19-60 (220)
119 PRK15064 ABC transporter ATP-b 97.8 2.6E-06 5.7E-11 73.9 -1.1 47 155-203 11-57 (530)
120 PLN03073 ABC transporter F fam 97.8 7.4E-06 1.6E-10 73.3 1.7 52 150-203 513-565 (718)
121 PRK14273 phosphate ABC transpo 97.8 5.8E-06 1.2E-10 65.0 0.9 44 154-199 16-59 (254)
122 PRK13647 cbiO cobalt transport 97.8 4.6E-06 9.9E-11 66.4 0.3 42 160-203 20-61 (274)
123 PRK13342 recombination factor 97.8 2.5E-05 5.4E-10 65.8 4.7 47 152-198 12-61 (413)
124 cd03251 ABCC_MsbA MsbA is an e 97.8 1.6E-05 3.5E-10 61.7 3.3 42 160-203 17-58 (234)
125 cd03252 ABCC_Hemolysin The ABC 97.8 6.6E-06 1.4E-10 64.0 1.1 41 160-202 17-57 (237)
126 PRK15064 ABC transporter ATP-b 97.8 4.3E-06 9.4E-11 72.6 -0.0 49 153-203 327-375 (530)
127 PRK10762 D-ribose transporter 97.8 3.6E-06 7.8E-11 72.6 -0.5 48 154-203 13-60 (501)
128 PRK13650 cbiO cobalt transport 97.8 1.6E-05 3.6E-10 63.4 3.2 42 160-203 22-63 (279)
129 PRK14238 phosphate transporter 97.8 4.6E-06 1E-10 66.3 0.0 45 152-198 31-75 (271)
130 cd03250 ABCC_MRP_domain1 Domai 97.8 7.8E-06 1.7E-10 62.1 1.3 42 160-203 20-61 (204)
131 PF12061 DUF3542: Protein of u 97.8 1.7E-05 3.8E-10 62.8 3.2 78 8-92 297-374 (402)
132 COG4619 ABC-type uncharacteriz 97.8 1.1E-05 2.3E-10 58.9 1.9 42 160-203 18-59 (223)
133 PRK15056 manganese/iron transp 97.8 1.6E-05 3.4E-10 63.3 3.0 41 161-203 23-63 (272)
134 PRK14259 phosphate ABC transpo 97.8 3.9E-06 8.5E-11 66.6 -0.4 43 154-198 22-64 (269)
135 COG4133 CcmA ABC-type transpor 97.8 8.7E-06 1.9E-10 60.2 1.3 43 159-203 16-58 (209)
136 TIGR02314 ABC_MetN D-methionin 97.8 4.9E-06 1.1E-10 68.2 0.0 42 160-203 20-61 (343)
137 PRK13639 cbiO cobalt transport 97.8 1.7E-05 3.7E-10 63.1 3.1 42 160-203 17-58 (275)
138 PRK09700 D-allose transporter 97.8 4.5E-06 9.8E-11 72.1 -0.4 50 152-203 12-61 (510)
139 PRK14267 phosphate ABC transpo 97.8 5.1E-06 1.1E-10 65.2 -0.1 43 155-199 14-56 (253)
140 TIGR03719 ABC_ABC_ChvD ATP-bin 97.8 5.5E-06 1.2E-10 72.3 0.1 43 159-203 19-61 (552)
141 PRK13632 cbiO cobalt transport 97.8 8E-06 1.7E-10 64.9 1.0 42 160-203 24-65 (271)
142 COG0411 LivG ABC-type branched 97.8 1E-06 2.2E-11 67.6 -3.9 50 152-203 11-60 (250)
143 TIGR03719 ABC_ABC_ChvD ATP-bin 97.8 4.7E-06 1E-10 72.7 -0.4 48 154-203 331-378 (552)
144 PRK13546 teichoic acids export 97.8 2E-05 4.4E-10 62.4 3.2 37 164-202 43-79 (264)
145 cd03369 ABCC_NFT1 Domain 2 of 97.8 1E-05 2.3E-10 61.6 1.5 42 160-203 23-64 (207)
146 PRK14245 phosphate ABC transpo 97.8 3.5E-06 7.7E-11 66.1 -1.1 35 160-196 18-52 (250)
147 PRK09984 phosphonate/organopho 97.8 4.9E-06 1.1E-10 65.8 -0.4 44 155-200 14-57 (262)
148 cd03253 ABCC_ATM1_transporter 97.8 2.4E-05 5.2E-10 60.7 3.5 42 160-203 16-57 (236)
149 COG4608 AppF ABC-type oligopep 97.8 9.6E-06 2.1E-10 63.4 1.2 42 160-203 28-69 (268)
150 PRK11331 5-methylcytosine-spec 97.8 0.00012 2.6E-09 61.6 7.7 45 152-198 175-219 (459)
151 PRK11432 fbpC ferric transport 97.8 3.9E-06 8.4E-11 69.1 -1.1 49 153-203 14-62 (351)
152 PRK13652 cbiO cobalt transport 97.8 2.2E-05 4.7E-10 62.6 3.3 42 160-203 19-60 (277)
153 PRK14241 phosphate transporter 97.8 4.9E-06 1.1E-10 65.6 -0.5 37 160-198 19-55 (258)
154 PRK13645 cbiO cobalt transport 97.8 2.3E-05 5E-10 62.8 3.4 42 160-203 26-67 (289)
155 PRK13637 cbiO cobalt transport 97.8 2.1E-05 4.5E-10 63.1 3.1 42 160-203 22-63 (287)
156 PRK13644 cbiO cobalt transport 97.8 2.2E-05 4.8E-10 62.5 3.2 42 160-203 17-58 (274)
157 PRK10419 nikE nickel transport 97.8 8.4E-06 1.8E-10 64.7 0.8 42 160-203 27-68 (268)
158 PRK13547 hmuV hemin importer A 97.7 6.9E-06 1.5E-10 65.3 0.3 39 160-200 16-54 (272)
159 PRK13646 cbiO cobalt transport 97.7 2.3E-05 5E-10 62.8 3.3 42 160-203 22-63 (286)
160 PRK13648 cbiO cobalt transport 97.7 2.2E-05 4.8E-10 62.3 3.1 41 160-202 24-64 (269)
161 PRK11153 metN DL-methionine tr 97.7 2.1E-05 4.6E-10 64.6 3.1 42 160-203 20-61 (343)
162 PRK14265 phosphate ABC transpo 97.7 5.4E-06 1.2E-10 66.0 -0.4 44 152-197 27-70 (274)
163 cd03234 ABCG_White The White s 97.7 1.1E-05 2.4E-10 62.3 1.3 37 160-198 22-58 (226)
164 PRK14247 phosphate ABC transpo 97.7 7E-06 1.5E-10 64.4 0.2 37 160-198 18-54 (250)
165 cd03291 ABCC_CFTR1 The CFTR su 97.7 9.8E-06 2.1E-10 64.8 1.0 42 160-203 52-93 (282)
166 PRK13635 cbiO cobalt transport 97.7 2.4E-05 5.3E-10 62.4 3.2 42 160-203 22-63 (279)
167 PRK11000 maltose/maltodextrin 97.7 5.7E-06 1.2E-10 68.6 -0.4 42 160-203 18-59 (369)
168 PRK11288 araG L-arabinose tran 97.7 5.1E-06 1.1E-10 71.6 -0.7 48 154-203 13-60 (501)
169 cd03213 ABCG_EPDR ABCG transpo 97.7 6.6E-06 1.4E-10 62.1 -0.0 42 160-203 24-67 (194)
170 PRK11176 lipid transporter ATP 97.7 1.6E-05 3.5E-10 69.8 2.3 42 160-203 358-399 (582)
171 PTZ00202 tuzin; Provisional 97.7 0.00011 2.4E-09 61.6 7.0 50 148-197 258-310 (550)
172 PRK09700 D-allose transporter 97.7 1.2E-05 2.5E-10 69.6 1.4 42 160-203 278-319 (510)
173 PRK14274 phosphate ABC transpo 97.7 4.9E-06 1.1E-10 65.6 -0.8 37 160-198 27-63 (259)
174 PRK14253 phosphate ABC transpo 97.7 8.5E-06 1.9E-10 63.8 0.5 39 159-199 17-55 (249)
175 PRK13409 putative ATPase RIL; 97.7 2.7E-05 5.9E-10 68.4 3.6 49 153-204 81-130 (590)
176 PRK13651 cobalt transporter AT 97.7 2.6E-05 5.7E-10 63.0 3.3 42 160-203 22-63 (305)
177 PRK11819 putative ABC transpor 97.7 7.5E-06 1.6E-10 71.5 0.1 48 154-203 333-380 (556)
178 PRK13643 cbiO cobalt transport 97.7 2.7E-05 5.9E-10 62.4 3.3 42 160-203 21-62 (288)
179 PRK09580 sufC cysteine desulfu 97.7 7.1E-06 1.5E-10 64.2 -0.1 41 160-202 16-58 (248)
180 TIGR03522 GldA_ABC_ATP gliding 97.7 2.4E-05 5.3E-10 63.1 3.0 42 160-203 17-58 (301)
181 PRK10418 nikD nickel transport 97.7 1.2E-05 2.6E-10 63.2 1.1 38 160-199 18-55 (254)
182 PRK14235 phosphate transporter 97.7 3.7E-06 8.1E-11 66.7 -1.8 37 160-198 34-70 (267)
183 PRK00080 ruvB Holliday junctio 97.7 5.5E-05 1.2E-09 61.8 5.0 47 152-198 25-76 (328)
184 PRK13634 cbiO cobalt transport 97.7 2.4E-05 5.3E-10 62.8 2.8 42 160-203 22-63 (290)
185 COG1117 PstB ABC-type phosphat 97.7 2.1E-05 4.6E-10 59.5 2.2 45 149-195 11-55 (253)
186 PRK14237 phosphate transporter 97.7 6.9E-06 1.5E-10 65.1 -0.4 45 152-198 27-71 (267)
187 COG2256 MGS1 ATPase related to 97.7 5.6E-05 1.2E-09 62.1 4.8 48 151-198 23-73 (436)
188 TIGR03265 PhnT2 putative 2-ami 97.7 3.6E-06 7.9E-11 69.3 -2.1 41 161-203 20-60 (353)
189 CHL00131 ycf16 sulfate ABC tra 97.7 1.3E-05 2.9E-10 62.8 1.2 35 160-196 22-56 (252)
190 TIGR02868 CydC thiol reductant 97.7 1.5E-05 3.2E-10 69.2 1.5 52 150-203 339-391 (529)
191 TIGR03797 NHPM_micro_ABC2 NHPM 97.7 1.5E-05 3.4E-10 71.3 1.7 53 149-203 455-509 (686)
192 PRK14239 phosphate transporter 97.7 7.8E-06 1.7E-10 64.2 -0.2 35 160-196 20-54 (252)
193 PRK13549 xylose transporter AT 97.7 7.3E-06 1.6E-10 70.8 -0.4 46 152-199 12-57 (506)
194 PRK09452 potA putrescine/sperm 97.7 4.6E-06 9.9E-11 69.2 -1.6 50 152-203 21-70 (375)
195 PRK09536 btuD corrinoid ABC tr 97.7 3.9E-06 8.5E-11 70.1 -2.0 47 155-203 13-59 (402)
196 PRK13549 xylose transporter AT 97.7 1.3E-05 2.7E-10 69.3 1.0 42 160-203 277-319 (506)
197 PRK14272 phosphate ABC transpo 97.7 8.1E-06 1.8E-10 64.1 -0.2 39 159-199 18-56 (252)
198 PRK11288 araG L-arabinose tran 97.7 1.3E-05 2.9E-10 69.1 1.0 42 160-203 268-309 (501)
199 TIGR02982 heterocyst_DevA ABC 97.7 1.4E-05 3E-10 61.5 1.0 41 160-202 20-60 (220)
200 PRK11650 ugpC glycerol-3-phosp 97.7 6.2E-06 1.3E-10 68.1 -1.0 42 160-203 19-60 (356)
201 TIGR02928 orc1/cdc6 family rep 97.7 8.5E-05 1.9E-09 61.4 5.8 45 153-197 16-64 (365)
202 PRK14243 phosphate transporter 97.7 9E-06 2E-10 64.3 -0.1 43 153-197 18-60 (264)
203 PRK12402 replication factor C 97.7 7.4E-05 1.6E-09 61.0 5.3 46 152-197 15-60 (337)
204 PRK10982 galactose/methyl gala 97.7 1.2E-05 2.7E-10 69.1 0.8 43 160-204 263-305 (491)
205 PRK14262 phosphate ABC transpo 97.7 8E-06 1.7E-10 64.0 -0.4 37 160-198 18-54 (250)
206 PRK14255 phosphate ABC transpo 97.7 8.1E-06 1.8E-10 64.1 -0.4 36 160-197 20-55 (252)
207 cd00267 ABC_ATPase ABC (ATP-bi 97.7 3.1E-05 6.8E-10 56.3 2.8 34 168-203 22-55 (157)
208 COG4152 ABC-type uncharacteriz 97.7 7.8E-06 1.7E-10 62.9 -0.5 52 150-203 7-58 (300)
209 PRK11308 dppF dipeptide transp 97.7 1.2E-05 2.7E-10 65.5 0.6 42 160-203 30-71 (327)
210 PRK13633 cobalt transporter AT 97.7 1.4E-05 3E-10 63.9 0.8 42 160-203 25-66 (280)
211 PRK14240 phosphate transporter 97.7 1E-05 2.3E-10 63.4 0.1 37 160-198 18-54 (250)
212 PRK14270 phosphate ABC transpo 97.7 9.4E-06 2E-10 63.7 -0.2 37 160-198 19-55 (251)
213 PRK15439 autoinducer 2 ABC tra 97.7 1.4E-05 3.1E-10 69.1 0.9 41 161-203 279-319 (510)
214 PRK14254 phosphate ABC transpo 97.7 7.7E-06 1.7E-10 65.5 -0.7 44 153-198 47-90 (285)
215 PRK14261 phosphate ABC transpo 97.7 8.7E-06 1.9E-10 64.0 -0.4 37 159-197 20-56 (253)
216 PRK14256 phosphate ABC transpo 97.7 7.8E-06 1.7E-10 64.2 -0.7 37 160-198 19-55 (252)
217 TIGR00554 panK_bact pantothena 97.7 8.2E-05 1.8E-09 59.5 5.1 27 171-197 60-86 (290)
218 PRK10762 D-ribose transporter 97.6 1.4E-05 3.1E-10 68.9 0.6 41 161-203 268-308 (501)
219 COG4586 ABC-type uncharacteriz 97.6 2.4E-05 5.1E-10 61.2 1.7 42 160-203 39-80 (325)
220 PRK10851 sulfate/thiosulfate t 97.6 4.4E-05 9.5E-10 63.0 3.4 42 160-203 17-58 (353)
221 TIGR03258 PhnT 2-aminoethylpho 97.6 5.6E-06 1.2E-10 68.4 -1.9 46 154-201 14-59 (362)
222 PRK14251 phosphate ABC transpo 97.6 1.1E-05 2.4E-10 63.2 -0.1 37 160-198 19-55 (251)
223 TIGR01193 bacteriocin_ABC ABC- 97.6 2.2E-05 4.8E-10 70.5 1.7 52 150-203 478-530 (708)
224 COG4604 CeuD ABC-type enteroch 97.6 1.7E-05 3.8E-10 59.2 0.8 50 151-202 7-56 (252)
225 COG1132 MdlB ABC-type multidru 97.6 1.6E-05 3.4E-10 69.7 0.6 56 146-203 329-385 (567)
226 PRK14269 phosphate ABC transpo 97.6 9.8E-06 2.1E-10 63.4 -0.6 36 160-197 17-52 (246)
227 PRK10522 multidrug transporter 97.6 2.3E-05 5E-10 68.3 1.7 42 160-203 338-379 (547)
228 TIGR02633 xylG D-xylose ABC tr 97.6 1.1E-05 2.3E-10 69.7 -0.5 39 159-199 15-53 (500)
229 PRK14252 phosphate ABC transpo 97.6 8.6E-06 1.9E-10 64.5 -1.0 45 152-198 23-67 (265)
230 PRK14271 phosphate ABC transpo 97.6 9.4E-06 2E-10 64.7 -0.8 48 150-199 26-73 (276)
231 PRK14258 phosphate ABC transpo 97.6 1E-05 2.2E-10 63.9 -0.6 38 160-199 22-59 (261)
232 PLN03025 replication factor C 97.6 9.8E-05 2.1E-09 60.1 5.1 46 152-197 13-58 (319)
233 PRK14236 phosphate transporter 97.6 1.1E-05 2.4E-10 64.1 -0.4 46 151-198 31-76 (272)
234 COG1118 CysA ABC-type sulfate/ 97.6 2.5E-05 5.4E-10 62.0 1.6 47 155-203 12-58 (345)
235 PRK13640 cbiO cobalt transport 97.6 5.2E-05 1.1E-09 60.6 3.5 39 160-200 22-60 (282)
236 PRK09376 rho transcription ter 97.6 5.2E-05 1.1E-09 62.7 3.5 31 171-205 169-199 (416)
237 PRK13642 cbiO cobalt transport 97.6 5.3E-05 1.1E-09 60.4 3.5 42 160-203 22-63 (277)
238 PRK10070 glycine betaine trans 97.6 4.4E-05 9.5E-10 63.9 3.0 39 163-203 46-84 (400)
239 COG1119 ModF ABC-type molybden 97.6 2.2E-05 4.7E-10 60.4 1.1 53 148-202 34-86 (257)
240 PRK14268 phosphate ABC transpo 97.6 1.1E-05 2.3E-10 63.7 -0.7 42 155-198 22-63 (258)
241 PRK15079 oligopeptide ABC tran 97.6 4.9E-05 1.1E-09 62.2 3.1 42 160-203 36-77 (331)
242 PRK00411 cdc6 cell division co 97.6 0.00014 3.1E-09 60.8 5.9 47 152-198 30-80 (394)
243 PRK14275 phosphate ABC transpo 97.6 8.7E-06 1.9E-10 65.2 -1.3 42 154-197 48-89 (286)
244 cd03288 ABCC_SUR2 The SUR doma 97.6 6.1E-05 1.3E-09 59.4 3.5 42 160-203 36-77 (257)
245 TIGR02633 xylG D-xylose ABC tr 97.6 2.5E-05 5.4E-10 67.4 1.4 39 159-199 274-312 (500)
246 COG4525 TauB ABC-type taurine 97.6 5.4E-05 1.2E-09 56.6 2.8 42 159-202 19-60 (259)
247 PRK14260 phosphate ABC transpo 97.6 1.6E-05 3.5E-10 62.7 0.1 37 160-198 22-58 (259)
248 PRK00440 rfc replication facto 97.6 0.00012 2.7E-09 59.2 5.3 46 152-197 17-62 (319)
249 PRK10789 putative multidrug tr 97.6 3.9E-05 8.4E-10 67.3 2.4 43 159-203 329-371 (569)
250 PRK10938 putative molybdenum t 97.6 1.6E-05 3.4E-10 68.5 -0.1 43 154-198 269-311 (490)
251 PRK14263 phosphate ABC transpo 97.6 1.1E-05 2.3E-10 63.8 -1.1 44 154-199 17-60 (261)
252 PRK14264 phosphate ABC transpo 97.6 1.3E-05 2.8E-10 64.8 -0.8 43 154-198 54-96 (305)
253 PRK14249 phosphate ABC transpo 97.6 1.6E-05 3.4E-10 62.4 -0.2 39 160-200 19-57 (251)
254 TIGR03269 met_CoM_red_A2 methy 97.6 2E-05 4.3E-10 68.3 0.3 42 160-203 299-340 (520)
255 PRK10261 glutathione transport 97.5 2.2E-05 4.8E-10 69.5 0.6 42 160-203 339-380 (623)
256 PRK13409 putative ATPase RIL; 97.5 4.9E-05 1.1E-09 66.8 2.7 38 164-203 358-395 (590)
257 TIGR00150 HI0065_YjeE ATPase, 97.5 0.00022 4.8E-09 50.3 5.5 35 162-198 13-47 (133)
258 TIGR01842 type_I_sec_PrtD type 97.5 7.5E-05 1.6E-09 65.1 3.8 43 159-203 332-374 (544)
259 cd03232 ABC_PDR_domain2 The pl 97.5 6.7E-05 1.5E-09 56.5 3.0 36 160-197 22-57 (192)
260 COG1245 Predicted ATPase, RNas 97.5 6.8E-05 1.5E-09 62.6 3.2 29 175-203 369-397 (591)
261 PRK04195 replication factor C 97.5 8.7E-05 1.9E-09 63.8 4.0 47 151-197 13-63 (482)
262 COG1123 ATPase components of v 97.5 3.6E-05 7.8E-10 65.9 1.6 41 160-202 306-346 (539)
263 PRK10261 glutathione transport 97.5 2.6E-05 5.6E-10 69.0 0.7 42 160-203 31-72 (623)
264 PLN03073 ABC transporter F fam 97.5 1E-05 2.2E-10 72.4 -1.8 45 150-196 182-226 (718)
265 PRK11022 dppD dipeptide transp 97.5 2.5E-05 5.3E-10 63.8 0.5 37 160-198 22-58 (326)
266 PRK14962 DNA polymerase III su 97.5 0.00017 3.7E-09 61.6 5.6 46 152-197 14-60 (472)
267 KOG0058 Peptide exporter, ABC 97.5 5.7E-05 1.2E-09 66.2 2.6 56 146-203 466-524 (716)
268 PRK14244 phosphate ABC transpo 97.5 2.3E-05 4.9E-10 61.5 0.1 37 160-198 20-56 (251)
269 PRK15455 PrkA family serine pr 97.5 0.00015 3.2E-09 62.7 5.0 45 153-197 77-127 (644)
270 TIGR03015 pepcterm_ATPase puta 97.5 0.00022 4.8E-09 56.3 5.7 38 160-198 31-68 (269)
271 COG4778 PhnL ABC-type phosphon 97.5 4.6E-05 1E-09 55.7 1.6 41 161-203 27-67 (235)
272 cd02019 NK Nucleoside/nucleoti 97.5 0.00011 2.4E-09 45.8 3.1 23 175-197 1-23 (69)
273 TIGR03345 VI_ClpV1 type VI sec 97.5 0.0002 4.4E-09 65.4 6.0 47 151-197 186-232 (852)
274 PRK15134 microcin C ABC transp 97.5 3.2E-05 6.9E-10 67.2 0.8 38 160-199 24-61 (529)
275 COG1135 AbcC ABC-type metal io 97.5 4.6E-05 9.9E-10 60.6 1.5 42 160-203 21-62 (339)
276 COG4598 HisP ABC-type histidin 97.5 6.9E-05 1.5E-09 55.3 2.3 49 152-202 13-61 (256)
277 TIGR00958 3a01208 Conjugate Tr 97.5 4.7E-05 1E-09 68.5 1.7 43 159-203 495-537 (711)
278 PRK15093 antimicrobial peptide 97.5 3.5E-05 7.6E-10 63.0 0.8 37 160-198 22-58 (330)
279 TIGR03415 ABC_choXWV_ATP choli 97.5 8.6E-05 1.9E-09 61.8 3.1 36 166-203 45-80 (382)
280 cd03289 ABCC_CFTR2 The CFTR su 97.5 4.4E-05 9.5E-10 60.8 1.3 41 160-203 19-59 (275)
281 COG0466 Lon ATP-dependent Lon 97.5 0.00021 4.6E-09 62.7 5.5 47 151-197 322-374 (782)
282 CHL00095 clpC Clp protease ATP 97.5 0.0002 4.2E-09 65.5 5.6 47 151-197 178-224 (821)
283 KOG2028 ATPase related to the 97.5 0.00014 3.1E-09 59.2 4.0 33 166-198 155-187 (554)
284 PHA02544 44 clamp loader, smal 97.4 0.00022 4.8E-09 57.8 5.0 47 151-197 20-67 (316)
285 TIGR03796 NHPM_micro_ABC1 NHPM 97.4 5.6E-05 1.2E-09 68.0 1.7 51 151-203 483-535 (710)
286 PRK11607 potG putrescine trans 97.4 0.00011 2.5E-09 61.1 3.3 50 152-203 26-75 (377)
287 TIGR02639 ClpA ATP-dependent C 97.4 0.00028 6E-09 63.7 6.0 47 151-197 181-227 (731)
288 PRK14961 DNA polymerase III su 97.4 0.00032 6.9E-09 58.2 6.0 46 152-197 16-62 (363)
289 TIGR02857 CydD thiol reductant 97.4 5.9E-05 1.3E-09 65.5 1.7 43 159-203 336-378 (529)
290 TIGR03420 DnaA_homol_Hda DnaA 97.4 0.00034 7.3E-09 53.8 5.7 41 157-197 22-62 (226)
291 PRK11160 cysteine/glutathione 97.4 6E-05 1.3E-09 66.1 1.7 43 159-203 354-396 (574)
292 COG1122 CbiO ABC-type cobalt t 97.4 5.2E-05 1.1E-09 58.9 1.1 42 159-202 18-59 (235)
293 PRK13545 tagH teichoic acids e 97.4 0.00011 2.3E-09 63.2 3.0 41 161-203 40-80 (549)
294 PRK09473 oppD oligopeptide tra 97.4 3.1E-05 6.7E-10 63.3 -0.3 38 160-199 31-68 (330)
295 PRK14266 phosphate ABC transpo 97.4 0.00015 3.2E-09 56.9 3.5 36 160-197 18-53 (250)
296 COG1129 MglA ABC-type sugar tr 97.4 6.2E-05 1.3E-09 64.0 1.2 57 145-203 8-64 (500)
297 TIGR01846 type_I_sec_HlyB type 97.4 8.9E-05 1.9E-09 66.5 2.3 43 159-203 471-513 (694)
298 TIGR03375 type_I_sec_LssB type 97.4 6.4E-05 1.4E-09 67.4 1.4 43 159-203 479-521 (694)
299 TIGR02204 MsbA_rel ABC transpo 97.4 7.4E-05 1.6E-09 65.6 1.7 42 160-203 355-396 (576)
300 cd00820 PEPCK_HprK Phosphoenol 97.4 0.00017 3.7E-09 48.9 3.1 20 175-194 17-36 (107)
301 PRK13657 cyclic beta-1,2-gluca 97.4 6.9E-05 1.5E-09 65.9 1.5 43 159-203 349-391 (588)
302 PRK13341 recombination factor 97.4 0.00026 5.6E-09 63.5 5.0 46 152-197 28-76 (725)
303 PRK15134 microcin C ABC transp 97.4 7E-05 1.5E-09 65.1 1.4 37 160-198 301-337 (529)
304 PRK10865 protein disaggregatio 97.4 0.00034 7.4E-09 64.1 5.8 47 151-197 177-223 (857)
305 PF03193 DUF258: Protein of un 97.4 0.00033 7.1E-09 51.1 4.6 35 160-197 25-59 (161)
306 TIGR01192 chvA glucan exporter 97.3 8.3E-05 1.8E-09 65.4 1.5 51 151-203 340-391 (585)
307 PRK10790 putative multidrug tr 97.3 7.7E-05 1.7E-09 65.7 1.3 42 160-203 356-397 (592)
308 PRK10463 hydrogenase nickel in 97.3 0.00055 1.2E-08 54.6 5.9 33 166-198 97-129 (290)
309 COG0396 sufC Cysteine desulfur 97.3 0.00011 2.4E-09 56.2 1.8 37 159-197 18-54 (251)
310 TIGR02881 spore_V_K stage V sp 97.3 0.00047 1E-08 54.5 5.5 25 173-197 42-66 (261)
311 PRK11174 cysteine/glutathione 97.3 5.9E-05 1.3E-09 66.3 0.4 42 159-203 364-405 (588)
312 TIGR02203 MsbA_lipidA lipid A 97.3 0.0001 2.3E-09 64.5 1.8 42 160-203 347-388 (571)
313 PRK13531 regulatory ATPase Rav 97.3 0.00046 9.9E-09 58.7 5.5 43 153-197 21-63 (498)
314 KOG0056 Heavy metal exporter H 97.3 0.00016 3.4E-09 61.2 2.6 57 145-203 537-594 (790)
315 KOG2004 Mitochondrial ATP-depe 97.3 0.0029 6.2E-08 55.9 10.3 47 151-197 410-462 (906)
316 TIGR01194 cyc_pep_trnsptr cycl 97.3 9.4E-05 2E-09 64.7 1.4 42 160-203 357-398 (555)
317 cd03279 ABC_sbcCD SbcCD and ot 97.3 0.00021 4.5E-09 54.8 3.0 20 175-194 30-49 (213)
318 KOG0057 Mitochondrial Fe/S clu 97.3 0.00012 2.6E-09 62.3 1.7 52 145-198 351-403 (591)
319 COG1101 PhnK ABC-type uncharac 97.3 0.00021 4.5E-09 54.3 2.7 42 160-203 21-62 (263)
320 TIGR00954 3a01203 Peroxysomal 97.3 0.00011 2.4E-09 65.5 1.5 43 159-203 466-508 (659)
321 PRK10787 DNA-binding ATP-depen 97.3 0.0025 5.3E-08 57.9 10.0 46 152-197 322-373 (784)
322 PF13555 AAA_29: P-loop contai 97.3 0.00038 8.2E-09 42.3 3.3 21 175-195 25-45 (62)
323 PRK14956 DNA polymerase III su 97.2 0.00049 1.1E-08 58.6 5.1 46 152-197 18-64 (484)
324 TIGR03346 chaperone_ClpB ATP-d 97.2 0.00057 1.2E-08 62.7 5.8 47 151-197 172-218 (852)
325 COG3845 ABC-type uncharacteriz 97.2 9E-05 2E-09 62.3 0.6 51 151-203 10-60 (501)
326 PRK14955 DNA polymerase III su 97.2 0.00062 1.3E-08 57.1 5.6 46 152-197 16-62 (397)
327 COG4988 CydD ABC-type transpor 97.2 0.0001 2.2E-09 63.1 0.9 44 159-204 335-378 (559)
328 PLN02796 D-glycerate 3-kinase 97.2 0.00032 6.9E-09 57.2 3.6 28 172-199 99-126 (347)
329 TIGR01242 26Sp45 26S proteasom 97.2 0.00076 1.7E-08 55.9 5.6 46 153-198 123-181 (364)
330 PRK10416 signal recognition pa 97.2 0.00047 1E-08 56.0 4.2 28 172-199 113-140 (318)
331 PRK14957 DNA polymerase III su 97.2 0.00068 1.5E-08 58.9 5.3 46 152-197 16-62 (546)
332 PRK08084 DNA replication initi 97.2 0.00097 2.1E-08 51.9 5.7 45 153-197 24-69 (235)
333 KOG0991 Replication factor C, 97.2 0.00051 1.1E-08 52.8 3.9 45 152-196 27-71 (333)
334 PRK06995 flhF flagellar biosyn 97.2 0.00034 7.3E-09 59.7 3.2 25 174-198 257-281 (484)
335 PLN03211 ABC transporter G-25; 97.1 8.4E-05 1.8E-09 66.2 -0.5 43 155-199 78-120 (659)
336 TIGR03238 dnd_assoc_3 dnd syst 97.1 0.00025 5.5E-09 60.0 2.3 31 168-202 29-59 (504)
337 PRK08727 hypothetical protein; 97.1 0.0014 3.1E-08 50.9 6.3 45 153-197 21-65 (233)
338 PRK14257 phosphate ABC transpo 97.1 0.00039 8.4E-09 56.9 3.3 37 160-198 97-133 (329)
339 PRK14963 DNA polymerase III su 97.1 0.00073 1.6E-08 58.3 5.0 47 152-198 14-61 (504)
340 TIGR00767 rho transcription te 97.1 0.0005 1.1E-08 57.2 3.8 32 170-205 167-198 (415)
341 PTZ00265 multidrug resistance 97.1 0.00023 5E-09 68.6 2.0 52 150-203 387-441 (1466)
342 PF06309 Torsin: Torsin; Inte 97.1 0.0016 3.4E-08 45.4 5.6 45 153-197 26-77 (127)
343 PRK01889 GTPase RsgA; Reviewed 97.1 0.00078 1.7E-08 55.7 4.8 41 160-202 184-224 (356)
344 TIGR02858 spore_III_AA stage I 97.1 0.00073 1.6E-08 53.6 4.4 42 162-203 99-141 (270)
345 CHL00081 chlI Mg-protoporyphyr 97.1 0.00076 1.7E-08 55.4 4.6 47 152-198 17-63 (350)
346 PRK14949 DNA polymerase III su 97.1 0.00084 1.8E-08 61.0 5.2 46 152-197 16-62 (944)
347 PRK05896 DNA polymerase III su 97.0 0.0011 2.4E-08 57.9 5.4 46 152-197 16-62 (605)
348 PRK03992 proteasome-activating 97.0 0.0011 2.4E-08 55.5 5.2 45 153-197 132-189 (389)
349 PRK14964 DNA polymerase III su 97.0 0.001 2.2E-08 57.0 5.1 45 152-196 13-58 (491)
350 PRK14721 flhF flagellar biosyn 97.0 0.00058 1.3E-08 57.4 3.5 23 174-196 192-214 (420)
351 cd03280 ABC_MutS2 MutS2 homolo 97.0 0.0006 1.3E-08 51.7 3.3 21 174-194 29-49 (200)
352 PLN02318 phosphoribulokinase/u 97.0 0.00059 1.3E-08 59.3 3.6 27 171-197 63-89 (656)
353 PRK10536 hypothetical protein; 97.0 0.0018 3.9E-08 50.8 5.9 43 152-196 55-97 (262)
354 PRK09087 hypothetical protein; 97.0 0.0018 3.9E-08 50.1 5.9 25 173-197 44-68 (226)
355 PRK14970 DNA polymerase III su 97.0 0.0014 3E-08 54.4 5.6 46 152-197 17-63 (367)
356 PRK11889 flhF flagellar biosyn 97.0 0.00075 1.6E-08 56.1 3.9 26 173-198 241-266 (436)
357 cd03243 ABC_MutS_homologs The 97.0 0.00059 1.3E-08 51.8 3.1 22 174-195 30-51 (202)
358 PRK08903 DnaA regulatory inact 97.0 0.0016 3.5E-08 50.2 5.6 39 159-197 27-66 (227)
359 PRK14722 flhF flagellar biosyn 97.0 0.00071 1.5E-08 56.0 3.7 24 174-197 138-161 (374)
360 PRK14958 DNA polymerase III su 97.0 0.0011 2.5E-08 57.2 5.1 46 152-197 16-62 (509)
361 TIGR03499 FlhF flagellar biosy 97.0 0.00073 1.6E-08 54.0 3.6 25 173-197 194-218 (282)
362 PRK14951 DNA polymerase III su 97.0 0.0013 2.9E-08 57.9 5.5 45 152-196 16-61 (618)
363 PRK14960 DNA polymerase III su 97.0 0.0012 2.7E-08 58.1 5.2 46 152-197 15-61 (702)
364 TIGR02902 spore_lonB ATP-depen 97.0 0.0024 5.1E-08 55.6 6.9 45 152-196 65-109 (531)
365 PRK11034 clpA ATP-dependent Cl 97.0 0.0012 2.7E-08 59.5 5.3 47 151-197 185-231 (758)
366 PRK06645 DNA polymerase III su 97.0 0.0014 3E-08 56.6 5.3 46 152-197 21-67 (507)
367 cd01854 YjeQ_engC YjeQ/EngC. 97.0 0.0011 2.4E-08 53.1 4.5 35 162-199 153-187 (287)
368 TIGR00602 rad24 checkpoint pro 97.0 0.0012 2.6E-08 58.4 5.0 49 149-197 81-134 (637)
369 TIGR02397 dnaX_nterm DNA polym 97.0 0.0018 4E-08 53.2 5.7 46 152-197 14-60 (355)
370 PRK00098 GTPase RsgA; Reviewed 96.9 0.0012 2.6E-08 53.2 4.5 35 162-199 156-190 (298)
371 PF02367 UPF0079: Uncharacteri 96.9 0.0014 3E-08 45.7 4.2 34 162-197 6-39 (123)
372 PRK08099 bifunctional DNA-bind 96.9 0.00082 1.8E-08 56.3 3.6 28 170-197 216-243 (399)
373 COG4181 Predicted ABC-type tra 96.9 0.00092 2E-08 49.1 3.3 33 168-202 33-65 (228)
374 cd01878 HflX HflX subfamily. 96.9 0.00093 2E-08 50.5 3.4 26 172-197 40-65 (204)
375 PLN03046 D-glycerate 3-kinase; 96.9 0.00096 2.1E-08 55.8 3.7 27 172-198 211-237 (460)
376 TIGR01257 rim_protein retinal- 96.9 0.00071 1.5E-08 66.9 3.3 42 160-203 1954-1995(2272)
377 PRK06893 DNA replication initi 96.9 0.00097 2.1E-08 51.7 3.5 25 173-197 39-63 (229)
378 PRK12323 DNA polymerase III su 96.9 0.0014 3.1E-08 57.7 4.8 46 152-197 16-62 (700)
379 COG0444 DppD ABC-type dipeptid 96.9 0.00038 8.2E-09 55.8 1.2 37 160-198 20-56 (316)
380 PRK14954 DNA polymerase III su 96.9 0.0018 3.9E-08 57.2 5.3 46 152-197 16-62 (620)
381 CHL00181 cbbX CbbX; Provisiona 96.9 0.0024 5.2E-08 51.2 5.6 23 175-197 61-83 (287)
382 PLN03232 ABC transporter C fam 96.9 0.00038 8.3E-09 67.4 1.3 43 159-203 1250-1292(1495)
383 PRK09183 transposase/IS protei 96.9 0.0011 2.3E-08 52.4 3.6 28 168-197 99-126 (259)
384 PLN02165 adenylate isopentenyl 96.9 0.0012 2.5E-08 53.7 3.8 29 169-197 39-67 (334)
385 PTZ00454 26S protease regulato 96.9 0.0019 4.2E-08 54.1 5.2 47 152-198 145-204 (398)
386 cd01855 YqeH YqeH. YqeH is an 96.9 0.0025 5.4E-08 47.7 5.3 42 154-197 110-151 (190)
387 PRK14969 DNA polymerase III su 96.9 0.0018 4E-08 56.2 5.2 46 152-197 16-62 (527)
388 PLN02348 phosphoribulokinase 96.9 0.0013 2.9E-08 54.5 4.1 27 171-197 47-73 (395)
389 KOG0927 Predicted transporter 96.8 0.001 2.2E-08 56.8 3.4 37 168-206 98-134 (614)
390 PRK09435 membrane ATPase/prote 96.8 0.0027 5.9E-08 51.8 5.8 36 163-198 44-81 (332)
391 PRK14952 DNA polymerase III su 96.8 0.0021 4.5E-08 56.4 5.3 46 152-197 13-59 (584)
392 PRK08691 DNA polymerase III su 96.8 0.0018 3.8E-08 57.5 4.9 45 152-196 16-61 (709)
393 PRK06620 hypothetical protein; 96.8 0.0011 2.5E-08 50.8 3.2 24 174-197 45-68 (214)
394 cd01858 NGP_1 NGP-1. Autoanti 96.8 0.0026 5.6E-08 46.2 5.0 44 155-198 81-127 (157)
395 PF08298 AAA_PrkA: PrkA AAA do 96.8 0.0024 5.2E-08 52.2 5.2 46 152-197 61-112 (358)
396 PRK05439 pantothenate kinase; 96.8 0.0014 3E-08 53.0 3.8 26 171-196 84-109 (311)
397 PRK07994 DNA polymerase III su 96.8 0.0022 4.7E-08 56.8 5.3 46 152-197 16-62 (647)
398 COG1245 Predicted ATPase, RNas 96.8 0.0013 2.8E-08 55.3 3.6 32 174-205 101-132 (591)
399 PLN02200 adenylate kinase fami 96.8 0.0015 3.3E-08 50.8 3.8 26 172-197 42-67 (234)
400 TIGR00390 hslU ATP-dependent p 96.8 0.0028 6E-08 53.1 5.5 47 152-198 12-72 (441)
401 PRK14974 cell division protein 96.8 0.0016 3.5E-08 53.3 4.0 27 172-198 139-165 (336)
402 PLN03130 ABC transporter C fam 96.8 0.00059 1.3E-08 66.5 1.7 43 159-203 1253-1295(1622)
403 PRK06305 DNA polymerase III su 96.8 0.0029 6.3E-08 54.0 5.7 46 152-197 17-63 (451)
404 TIGR02788 VirB11 P-type DNA tr 96.8 0.002 4.3E-08 52.2 4.5 28 170-199 143-170 (308)
405 PRK12727 flagellar biosynthesi 96.8 0.0024 5.3E-08 55.0 5.1 23 174-196 351-373 (559)
406 PTZ00361 26 proteosome regulat 96.8 0.0026 5.5E-08 54.0 5.2 45 153-197 184-241 (438)
407 PRK14950 DNA polymerase III su 96.8 0.0027 5.8E-08 56.0 5.5 46 152-197 16-62 (585)
408 PRK05201 hslU ATP-dependent pr 96.8 0.0035 7.5E-08 52.6 5.8 47 152-198 15-75 (443)
409 PRK10535 macrolide transporter 96.8 0.0011 2.4E-08 59.2 3.1 42 160-203 23-64 (648)
410 TIGR00763 lon ATP-dependent pr 96.8 0.0022 4.9E-08 58.3 5.1 47 152-198 320-372 (775)
411 TIGR00064 ftsY signal recognit 96.7 0.0019 4.2E-08 51.4 4.2 27 172-198 71-97 (272)
412 PRK07003 DNA polymerase III su 96.7 0.0022 4.9E-08 57.3 4.9 46 152-197 16-62 (830)
413 PRK13407 bchI magnesium chelat 96.7 0.0027 5.9E-08 51.9 5.0 47 151-197 7-53 (334)
414 PF03308 ArgK: ArgK protein; 96.7 0.0031 6.8E-08 49.3 5.0 38 161-198 15-54 (266)
415 TIGR01271 CFTR_protein cystic 96.7 0.00054 1.2E-08 66.3 1.0 42 161-204 442-483 (1490)
416 PRK09111 DNA polymerase III su 96.7 0.0028 6.2E-08 55.8 5.3 46 152-197 24-70 (598)
417 PRK09112 DNA polymerase III su 96.7 0.0038 8.2E-08 51.5 5.8 51 147-197 18-69 (351)
418 KOG0062 ATPase component of AB 96.7 0.00058 1.2E-08 57.9 0.9 42 152-195 87-128 (582)
419 PRK09862 putative ATP-dependen 96.7 0.0019 4.1E-08 55.6 4.0 49 150-200 189-237 (506)
420 cd03281 ABC_MSH5_euk MutS5 hom 96.7 0.0016 3.5E-08 49.9 3.3 23 173-195 29-51 (213)
421 TIGR00635 ruvB Holliday juncti 96.7 0.0019 4E-08 52.1 3.8 26 173-198 30-55 (305)
422 TIGR02524 dot_icm_DotB Dot/Icm 96.7 0.0032 6.9E-08 52.1 5.0 24 174-197 135-158 (358)
423 TIGR00957 MRP_assoc_pro multi 96.7 0.00073 1.6E-08 65.6 1.4 43 159-203 1300-1342(1522)
424 COG5265 ATM1 ABC-type transpor 96.6 0.0026 5.7E-08 52.9 4.2 45 157-203 275-319 (497)
425 PTZ00243 ABC transporter; Prov 96.6 0.0008 1.7E-08 65.4 1.4 42 160-203 1325-1366(1560)
426 TIGR01257 rim_protein retinal- 96.6 0.0014 3E-08 64.9 3.0 42 160-203 945-986 (2272)
427 TIGR02782 TrbB_P P-type conjug 96.6 0.0047 1E-07 49.9 5.6 32 164-197 125-156 (299)
428 PRK08154 anaerobic benzoate ca 96.6 0.0043 9.4E-08 50.3 5.4 25 173-197 133-157 (309)
429 COG4136 ABC-type uncharacteriz 96.6 0.0012 2.5E-08 47.6 1.8 32 166-199 23-54 (213)
430 TIGR00157 ribosome small subun 96.6 0.0036 7.8E-08 49.0 4.7 24 175-198 122-145 (245)
431 PF13245 AAA_19: Part of AAA d 96.6 0.0028 6E-08 40.3 3.3 23 174-196 11-34 (76)
432 TIGR00957 MRP_assoc_pro multi 96.6 0.00062 1.3E-08 66.1 0.5 43 160-204 653-695 (1522)
433 PF05673 DUF815: Protein of un 96.6 0.0048 1E-07 48.0 5.2 49 151-199 26-78 (249)
434 PRK10646 ADP-binding protein; 96.6 0.0047 1E-07 44.7 4.9 35 162-198 19-53 (153)
435 TIGR00750 lao LAO/AO transport 96.6 0.0027 5.9E-08 51.2 4.1 27 171-197 32-58 (300)
436 PLN00020 ribulose bisphosphate 96.6 0.0025 5.4E-08 52.5 3.8 27 172-198 147-173 (413)
437 PRK06835 DNA replication prote 96.6 0.21 4.6E-06 40.9 15.0 24 174-197 184-207 (329)
438 TIGR03689 pup_AAA proteasome A 96.6 0.0041 8.9E-08 53.6 5.2 46 152-197 182-240 (512)
439 COG4175 ProV ABC-type proline/ 96.6 0.0012 2.5E-08 53.1 1.7 34 168-203 51-84 (386)
440 COG1703 ArgK Putative periplas 96.6 0.004 8.7E-08 49.6 4.6 36 162-197 38-75 (323)
441 TIGR02880 cbbX_cfxQ probable R 96.5 0.0052 1.1E-07 49.2 5.3 23 175-197 60-82 (284)
442 PRK06002 fliI flagellum-specif 96.5 0.00092 2E-08 56.5 1.1 31 168-200 162-192 (450)
443 TIGR00955 3a01204 The Eye Pigm 96.5 0.00063 1.4E-08 60.3 0.1 38 160-199 40-77 (617)
444 TIGR00368 Mg chelatase-related 96.5 0.0033 7.1E-08 54.2 4.4 46 151-198 191-236 (499)
445 PLN03140 ABC transporter G fam 96.5 0.00077 1.7E-08 65.0 0.5 30 168-199 188-217 (1470)
446 TIGR01241 FtsH_fam ATP-depende 96.5 0.0053 1.2E-07 53.0 5.6 46 152-197 55-112 (495)
447 PF03215 Rad17: Rad17 cell cyc 96.5 0.0045 9.9E-08 53.6 5.1 40 158-197 25-69 (519)
448 PRK12724 flagellar biosynthesi 96.5 0.0028 6.1E-08 53.2 3.7 25 173-197 223-247 (432)
449 PRK13477 bifunctional pantoate 96.5 0.0025 5.4E-08 55.0 3.5 40 155-197 269-308 (512)
450 PHA02244 ATPase-like protein 96.5 0.0061 1.3E-07 50.3 5.6 38 158-197 106-143 (383)
451 PTZ00265 multidrug resistance 96.5 0.0011 2.4E-08 64.0 1.4 52 146-199 1166-1220(1466)
452 PRK07764 DNA polymerase III su 96.5 0.004 8.7E-08 56.8 4.9 46 152-197 15-61 (824)
453 TIGR01650 PD_CobS cobaltochela 96.5 0.01 2.2E-07 48.3 6.6 36 160-197 53-88 (327)
454 cd01129 PulE-GspE PulE/GspE Th 96.5 0.0056 1.2E-07 48.5 5.1 25 173-197 80-104 (264)
455 TIGR01526 nadR_NMN_Atrans nico 96.5 0.003 6.6E-08 51.6 3.7 24 174-197 163-186 (325)
456 PRK05342 clpX ATP-dependent pr 96.5 0.0052 1.1E-07 51.8 5.2 46 152-197 71-132 (412)
457 PRK14953 DNA polymerase III su 96.5 0.0058 1.3E-07 52.6 5.6 46 152-197 16-62 (486)
458 PRK10865 protein disaggregatio 96.5 0.0063 1.4E-07 56.0 6.1 46 152-197 568-622 (857)
459 PRK04220 2-phosphoglycerate ki 96.5 0.0053 1.2E-07 49.3 5.0 34 164-197 82-116 (301)
460 PRK14965 DNA polymerase III su 96.5 0.0058 1.2E-07 53.8 5.6 46 152-197 16-62 (576)
461 PRK05703 flhF flagellar biosyn 96.5 0.0028 6.1E-08 53.6 3.6 24 174-197 222-245 (424)
462 COG0542 clpA ATP-binding subun 96.5 0.17 3.7E-06 45.8 14.6 46 152-197 491-545 (786)
463 COG0714 MoxR-like ATPases [Gen 96.5 0.0052 1.1E-07 50.3 5.0 43 154-198 26-68 (329)
464 PRK06647 DNA polymerase III su 96.5 0.0051 1.1E-07 53.9 5.2 46 152-197 16-62 (563)
465 PTZ00243 ABC transporter; Prov 96.5 0.0021 4.6E-08 62.6 3.2 38 164-203 679-716 (1560)
466 PRK06851 hypothetical protein; 96.5 0.12 2.5E-06 43.0 12.8 41 155-199 200-240 (367)
467 PLN03232 ABC transporter C fam 96.5 0.0011 2.4E-08 64.3 1.2 41 160-202 632-672 (1495)
468 KOG0733 Nuclear AAA ATPase (VC 96.4 0.0065 1.4E-07 52.9 5.6 48 152-199 190-249 (802)
469 PLN03130 ABC transporter C fam 96.4 0.0014 3.1E-08 63.9 1.9 40 160-201 632-671 (1622)
470 PRK14489 putative bifunctional 96.4 0.0058 1.3E-07 50.8 5.2 43 156-198 185-230 (366)
471 PRK06526 transposase; Provisio 96.4 0.0034 7.4E-08 49.4 3.7 23 175-197 100-122 (254)
472 cd01853 Toc34_like Toc34-like 96.4 0.0077 1.7E-07 47.3 5.6 27 172-198 30-56 (249)
473 COG4615 PvdE ABC-type sideroph 96.4 0.0032 6.8E-08 52.2 3.5 38 164-203 342-379 (546)
474 COG1123 ATPase components of v 96.4 0.0014 2.9E-08 56.5 1.3 39 159-199 23-61 (539)
475 PF14532 Sigma54_activ_2: Sigm 96.4 0.005 1.1E-07 43.7 4.1 49 156-204 2-52 (138)
476 PRK14723 flhF flagellar biosyn 96.4 0.0031 6.7E-08 56.6 3.5 24 174-197 186-209 (767)
477 COG1137 YhbG ABC-type (unclass 96.4 5.5E-05 1.2E-09 56.7 -6.2 49 152-202 11-59 (243)
478 TIGR01425 SRP54_euk signal rec 96.4 0.0044 9.5E-08 52.3 4.1 26 172-197 99-124 (429)
479 PRK12288 GTPase RsgA; Reviewed 96.4 0.0038 8.3E-08 51.4 3.7 24 175-198 207-230 (347)
480 PRK08451 DNA polymerase III su 96.4 0.007 1.5E-07 52.5 5.4 46 152-197 14-60 (535)
481 TIGR00382 clpX endopeptidase C 96.4 0.008 1.7E-07 50.6 5.6 47 151-197 76-140 (413)
482 PRK12726 flagellar biosynthesi 96.4 0.0039 8.5E-08 51.7 3.7 25 173-197 206-230 (407)
483 PRK12289 GTPase RsgA; Reviewed 96.3 0.0046 1E-07 51.0 4.0 34 162-198 164-197 (352)
484 PRK07471 DNA polymerase III su 96.3 0.0096 2.1E-07 49.4 5.8 49 149-197 16-65 (365)
485 PRK12723 flagellar biosynthesi 96.3 0.0041 9E-08 51.9 3.7 25 173-197 174-198 (388)
486 TIGR01243 CDC48 AAA family ATP 96.3 0.0063 1.4E-07 55.1 5.1 46 152-197 178-236 (733)
487 PRK05642 DNA replication initi 96.3 0.004 8.7E-08 48.4 3.4 24 174-197 46-69 (234)
488 KOG0055 Multidrug/pheromone ex 96.3 0.002 4.3E-08 60.1 1.9 42 160-203 368-409 (1228)
489 TIGR00956 3a01205 Pleiotropic 96.3 0.0007 1.5E-08 65.2 -1.1 37 160-198 778-814 (1394)
490 PRK14948 DNA polymerase III su 96.3 0.0083 1.8E-07 53.2 5.6 46 152-197 16-62 (620)
491 COG1222 RPT1 ATP-dependent 26S 96.3 0.0091 2E-07 48.8 5.3 45 154-198 153-210 (406)
492 PRK00771 signal recognition pa 96.3 0.0098 2.1E-07 50.4 5.8 26 173-198 95-120 (437)
493 COG1419 FlhF Flagellar GTP-bin 96.3 0.0089 1.9E-07 49.7 5.3 36 159-194 185-225 (407)
494 TIGR00991 3a0901s02IAP34 GTP-b 96.3 0.01 2.2E-07 47.9 5.5 40 158-197 21-62 (313)
495 PF05659 RPW8: Arabidopsis bro 96.3 0.034 7.3E-07 40.0 7.6 108 5-129 7-114 (147)
496 PRK13851 type IV secretion sys 96.3 0.0062 1.3E-07 50.0 4.3 25 175-199 164-188 (344)
497 PRK12377 putative replication 96.2 0.0047 1E-07 48.4 3.4 26 173-198 101-126 (248)
498 KOG0734 AAA+-type ATPase conta 96.2 0.0063 1.4E-07 52.2 4.2 47 153-199 305-363 (752)
499 COG4674 Uncharacterized ABC-ty 96.2 0.00042 9E-09 51.9 -2.4 41 160-202 20-60 (249)
500 PRK11034 clpA ATP-dependent Cl 96.2 0.0097 2.1E-07 53.9 5.6 45 153-197 459-512 (758)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.85 E-value=1.3e-20 Score=168.64 Aligned_cols=192 Identities=30% Similarity=0.463 Sum_probs=144.6
Q ss_pred CCCccchhhhhhhhhHhhhhhhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHH
Q 037945 1 MDSLINPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIML 80 (206)
Q Consensus 1 M~~~~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~wl~~l~~~~ 80 (206)
|++++|..+.. +.+.+.+....+.+..+++..|++.|..|++++.++++. +.. .....+|...+++..
T Consensus 1 ~~~~~s~~~~~----~~~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~-------~~~-~~~~~~~~e~~~~~~ 68 (889)
T KOG4658|consen 1 MGACVSFGVEK----LDQLLNRESECLDGKDNYILELKENLKALQSALEDLDAK-------RDD-LERRVNWEEDVGDLV 68 (889)
T ss_pred CCeEEEEehhh----HHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh-------cch-HHHHHHHHHHHHHHH
Confidence 56666654443 667888999999999999999999999999999996544 443 478999999999999
Q ss_pred HHHHHHHhhhhHhhhh----------------hccCCccCCCCcccccchhHHHHHHHHHHHHHHhcCCcccccc-CCCC
Q 037945 81 REVDYILHRGDEEIQK----------------TCLRKTCFPGSWSSRDKLGKEASEKIVAVEELIGRGHFAVVAE-KPPR 143 (206)
Q Consensus 81 ~~~ed~ld~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~ 143 (206)
|+++|+++.+..+... -|+.++| ..++...+.+++++...++.++....+..|..... ..+.
T Consensus 69 ~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~~c~~~~~-~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~ 147 (889)
T KOG4658|consen 69 YLAEDIIWLFLVEEIERKANDLLSTRSVERQRLCLCGFC-SKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPR 147 (889)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHHHhhhhhH-hHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccch
Confidence 9999999998765322 1233444 34455557777888888888888776655544332 1122
Q ss_pred CCccccCCCCc--cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc-CCCCCCcC
Q 037945 144 APVEERPIGKT--VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR-DTEHDFDL 206 (206)
Q Consensus 144 ~~~~~~~~~~~--~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~-~~~~~Fd~ 206 (206)
+.....+.... +|.+..++++++.|.+++..++||+||||+||||||+.|+|+.. +. ++||.
T Consensus 148 ~~~e~~~~~~~~~VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~-~~Fd~ 212 (889)
T KOG4658|consen 148 EKVETRPIQSESDVGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVG-NHFDG 212 (889)
T ss_pred hhcccCCCCccccccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhc-ccCce
Confidence 22222222222 99999999999999998879999999999999999999999988 65 99984
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.86 E-value=1.2e-08 Score=95.52 Aligned_cols=47 Identities=23% Similarity=0.557 Sum_probs=40.9
Q ss_pred CCccchHHHHHHHHHhhh--cCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIE--DHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~--~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
...+|++..++++..+|. .++.++|+||||||+||||||+.+|+...
T Consensus 184 ~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~ 232 (1153)
T PLN03210 184 EDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS 232 (1153)
T ss_pred ccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh
Confidence 458999999999988775 35788999999999999999999999764
No 3
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.45 E-value=1.5e-07 Score=80.85 Aligned_cols=58 Identities=22% Similarity=0.266 Sum_probs=42.9
Q ss_pred CCccccCCCCccch-HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 144 APVEERPIGKTVGL-DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 144 ~~~~~~~~~~~~g~-~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..+.....+..|+. ...++++...+..++ .|+|+|+||+|||||++.|.+...+.+|.
T Consensus 320 ~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~--riaiiG~NG~GKSTLlk~l~g~~~~~~G~ 378 (530)
T COG0488 320 LVLEFENVSKGYDGGRLLLKDLSFRIDRGD--RIAIVGPNGAGKSTLLKLLAGELGPLSGT 378 (530)
T ss_pred eeEEEeccccccCCCceeecCceEEecCCC--EEEEECCCCCCHHHHHHHHhhhcccCCce
Confidence 34444455555643 456777777777888 99999999999999999998877655443
No 4
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.40 E-value=6.3e-08 Score=75.52 Aligned_cols=50 Identities=26% Similarity=0.393 Sum_probs=41.1
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+..||....++++...+..++ +++|+|+||+|||||.+.+++-..+.+|.
T Consensus 9 s~~y~~~~il~~ls~~i~~G~--i~~iiGpNG~GKSTLLk~l~g~l~p~~G~ 58 (258)
T COG1120 9 SFGYGGKPILDDLSFSIPKGE--ITGILGPNGSGKSTLLKCLAGLLKPKSGE 58 (258)
T ss_pred EEEECCeeEEecceEEecCCc--EEEEECCCCCCHHHHHHHHhccCCCCCCE
Confidence 345666667777887888888 99999999999999999999988776553
No 5
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.31 E-value=1.6e-07 Score=70.81 Aligned_cols=52 Identities=25% Similarity=0.376 Sum_probs=43.7
Q ss_pred CCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 150 PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 150 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+..+.||....++.+...+..++ +++|+|++|+|||||.+.|..-..+++|.
T Consensus 7 ~l~K~fg~~~VLkgi~l~v~~Ge--vv~iiGpSGSGKSTlLRclN~LE~~~~G~ 58 (240)
T COG1126 7 NLSKSFGDKEVLKGISLSVEKGE--VVVIIGPSGSGKSTLLRCLNGLEEPDSGS 58 (240)
T ss_pred eeeEEeCCeEEecCcceeEcCCC--EEEEECCCCCCHHHHHHHHHCCcCCCCce
Confidence 34567787777888888888899 99999999999999999999887777664
No 6
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.26 E-value=2.3e-07 Score=75.47 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=47.0
Q ss_pred ccccCCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 146 VEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 146 ~~~~~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+.....++.||....++++...+..++ .+++.||+|||||||.++|.+...|++|.
T Consensus 6 l~i~~v~k~yg~~~av~~isl~i~~Ge--f~~lLGPSGcGKTTlLR~IAGfe~p~~G~ 61 (352)
T COG3842 6 LEIRNVSKSFGDFTAVDDISLDIKKGE--FVTLLGPSGCGKTTLLRMIAGFEQPSSGE 61 (352)
T ss_pred EEEEeeeeecCCeeEEecceeeecCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 344456677886667888888888898 99999999999999999999999888664
No 7
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.25 E-value=1.8e-07 Score=72.75 Aligned_cols=49 Identities=22% Similarity=0.403 Sum_probs=39.0
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+..|+....+++|...+..++ +++|+||||+|||||+|.|.+-.++.+|
T Consensus 11 ~v~y~~~~vl~~i~l~v~~G~--~~~iiGPNGaGKSTLlK~iLGll~p~~G 59 (254)
T COG1121 11 TVSYGNRPVLEDISLSVEKGE--ITALIGPNGAGKSTLLKAILGLLKPSSG 59 (254)
T ss_pred EEEECCEeeeeccEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 344553247778877788887 9999999999999999999997766544
No 8
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.24 E-value=2.6e-07 Score=71.17 Aligned_cols=50 Identities=22% Similarity=0.405 Sum_probs=40.7
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+..||....++++...+.+++ .++|+|++|||||||.+.|.+-..+.+|.
T Consensus 10 ~~~f~~~~vl~~i~L~v~~GE--fvsilGpSGcGKSTLLriiAGL~~p~~G~ 59 (248)
T COG1116 10 SKSFGGVEVLEDINLSVEKGE--FVAILGPSGCGKSTLLRLIAGLEKPTSGE 59 (248)
T ss_pred EEEeCceEEeccceeEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 445555566777777778889 99999999999999999999988776553
No 9
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.22 E-value=6.8e-06 Score=69.55 Aligned_cols=60 Identities=22% Similarity=0.240 Sum_probs=41.2
Q ss_pred CCCCccccCCCCccchH-HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 142 PRAPVEERPIGKTVGLD-SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 142 ~~~~~~~~~~~~~~g~~-~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
|++.+...+++.-|..+ ..+.++..-+.-+. .|++||+||+|||||.+.+|++..|..|+
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~s--rvAlVGPNG~GKsTLlKl~~gdl~p~~G~ 446 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDS--RVALVGPNGAGKSTLLKLITGDLQPTIGM 446 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhhhcccCccc--ceeEecCCCCchhhhHHHHhhcccccccc
Confidence 34444444444433322 45555555555566 99999999999999999999999886554
No 10
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.21 E-value=3.9e-06 Score=64.04 Aligned_cols=49 Identities=22% Similarity=0.377 Sum_probs=35.4
Q ss_pred CCCCccchHHHHHHHHHhhh-----cCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 150 PIGKTVGLDSIISEVWRCIE-----DHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 150 ~~~~~~g~~~~~~~l~~~L~-----~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
....++|.+..++++.-.+. .+.+.-+-+|||+|+||||||+.|.+...
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~ 75 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG 75 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC
Confidence 34668999988887665544 24567899999999999999999998764
No 11
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.16 E-value=4.5e-07 Score=69.51 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=38.4
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+..++....++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 18 ~~~~~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~ 67 (214)
T PRK13543 18 AFSRNEEPVFGPLDFHVDAGE--ALLVQGDNGAGKTTLLRVLAGLLHVESGQ 67 (214)
T ss_pred EEecCCceeeecceEEECCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCee
Confidence 333443345666666677788 99999999999999999999987776564
No 12
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.15 E-value=7.1e-07 Score=67.20 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=37.8
Q ss_pred cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+.....++.+...+..++ +.+|+|+||.|||||.+.+.++..+.+|.
T Consensus 11 ~~Gr~ll~~vsl~~~pGe--v~ailGPNGAGKSTlLk~LsGel~p~~G~ 57 (259)
T COG4559 11 LAGRRLLDGVSLDLRPGE--VLAILGPNGAGKSTLLKALSGELSPDSGE 57 (259)
T ss_pred eecceeccCcceeccCCc--EEEEECCCCccHHHHHHHhhCccCCCCCe
Confidence 333446666777777788 99999999999999999999998876543
No 13
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.14 E-value=7.6e-07 Score=68.24 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=39.1
Q ss_pred CCccchHH----HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 152 GKTVGLDS----IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 152 ~~~~g~~~----~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+..|+... .++++...+..++ +++|+|.+|+|||||++.+.+-.++.+|+
T Consensus 10 ~~~y~~~~~~~~~l~~VS~~i~~Ge--~lgivGeSGsGKSTL~r~l~Gl~~p~~G~ 63 (252)
T COG1124 10 SIVYGGGKFAFHALNNVSLEIERGE--TLGIVGESGSGKSTLARLLAGLEKPSSGS 63 (252)
T ss_pred EEEecCCcchhhhhcceeEEecCCC--EEEEEcCCCCCHHHHHHHHhcccCCCCce
Confidence 44555444 6666666677788 99999999999999999999887776554
No 14
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.12 E-value=4e-07 Score=71.77 Aligned_cols=51 Identities=22% Similarity=0.349 Sum_probs=38.6
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
....|+....++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 18 l~~~~~~~~il~~isl~i~~Ge--~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~ 68 (257)
T PRK11247 18 VSKRYGERTVLNQLDLHIPAGQ--FVAVVGRSGCGKSTLLRLLAGLETPSAGE 68 (257)
T ss_pred EEEEECCcceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence 3344554445666666666788 99999999999999999999987766554
No 15
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.12 E-value=6.8e-06 Score=58.08 Aligned_cols=42 Identities=33% Similarity=0.494 Sum_probs=35.6
Q ss_pred chHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 156 GLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 156 g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
|++..+..+...+.......+.|+|++|+|||||++.+++..
T Consensus 2 ~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 2 GQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred chHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 567778888888877555689999999999999999999875
No 16
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.11 E-value=9.9e-07 Score=67.68 Aligned_cols=42 Identities=26% Similarity=0.434 Sum_probs=35.5
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+.+++ .|+|+|.||+|||||.+.|.+-.+|++|.
T Consensus 42 aL~disf~i~~Ge--~vGiiG~NGaGKSTLlkliaGi~~Pt~G~ 83 (249)
T COG1134 42 ALKDISFEIYKGE--RVGIIGHNGAGKSTLLKLIAGIYKPTSGK 83 (249)
T ss_pred EecCceEEEeCCC--EEEEECCCCCcHHHHHHHHhCccCCCCce
Confidence 4455666677788 99999999999999999999999887664
No 17
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.11 E-value=5e-07 Score=69.00 Aligned_cols=42 Identities=26% Similarity=0.406 Sum_probs=33.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 16 il~~vs~~i~~G~--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~ 57 (211)
T cd03225 16 ALDDISLTIKKGE--FVLIVGPNGSGKSTLLRLLNGLLGPTSGE 57 (211)
T ss_pred eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 3444555555677 99999999999999999999987766554
No 18
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.11 E-value=5.8e-07 Score=69.10 Aligned_cols=42 Identities=31% Similarity=0.479 Sum_probs=34.4
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+++-..+.+|+
T Consensus 17 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~ 58 (220)
T cd03263 17 AVDDLSLNVYKGE--IFGLLGHNGAGKTTTLKMLTGELRPTSGT 58 (220)
T ss_pred eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 4556666666788 99999999999999999999987766554
No 19
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.11 E-value=6.8e-07 Score=69.05 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=37.2
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++....++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 16 ~~~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 63 (225)
T PRK10247 16 LAGDAKILNNISFSLRAGE--FKLITGPSGCGKSTLLKIVASLISPTSGT 63 (225)
T ss_pred eeCCceeeeccEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCe
Confidence 3443345666666677788 99999999999999999999987666554
No 20
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.11 E-value=8.4e-07 Score=69.25 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=34.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 17 il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~ 58 (243)
T TIGR02315 17 ALKNINLNINPGE--FVAIIGPSGAGKSTLLRCINRLVEPSSGS 58 (243)
T ss_pred eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCccE
Confidence 5556666666788 99999999999999999999987665553
No 21
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.11 E-value=4.9e-07 Score=69.43 Aligned_cols=42 Identities=31% Similarity=0.392 Sum_probs=33.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 19 il~~~s~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~ 60 (218)
T cd03255 19 ALKGVSLSIEKGE--FVAIVGPSGSGKSTLLNILGGLDRPTSGE 60 (218)
T ss_pred EEeeeEEEEcCCC--EEEEEcCCCCCHHHHHHHHhCCcCCCcee
Confidence 4455555566677 99999999999999999999987766553
No 22
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.07 E-value=5.2e-07 Score=72.42 Aligned_cols=52 Identities=33% Similarity=0.441 Sum_probs=43.3
Q ss_pred CCCCccc-hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 150 PIGKTVG-LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 150 ~~~~~~g-~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..++.+| ....++++...+..++ ++++.|+||+|||||.+.+.+...+.+|.
T Consensus 9 ~l~k~~~~~~~~l~~vs~~i~~Ge--i~gllG~NGAGKTTllk~l~gl~~p~~G~ 61 (293)
T COG1131 9 NLTKKYGGDKTALDGVSFEVEPGE--IFGLLGPNGAGKTTLLKILAGLLKPTSGE 61 (293)
T ss_pred ceEEEeCCCCEEEeceeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence 4456677 4667778888888888 99999999999999999999998876554
No 23
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=3e-06 Score=71.66 Aligned_cols=56 Identities=20% Similarity=0.281 Sum_probs=44.3
Q ss_pred ccccCCCCccchH--HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 146 VEERPIGKTVGLD--SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 146 ~~~~~~~~~~g~~--~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
....+.+..|..+ ..++++...+..++ .|+|+|..|+|||||++.+.+.+++++|+
T Consensus 337 l~~~~vsF~y~~~~~~~L~~~~l~l~~GE--kvAIlG~SGsGKSTllqLl~~~~~~~~G~ 394 (573)
T COG4987 337 LELRNVSFTYPGQQTKALKNFNLTLAQGE--KVAILGRSGSGKSTLLQLLAGAWDPQQGS 394 (573)
T ss_pred eeeccceeecCCCccchhhccceeecCCC--eEEEECCCCCCHHHHHHHHHhccCCCCCe
Confidence 3444445455332 48888888888999 99999999999999999999988887664
No 24
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.05 E-value=8.7e-07 Score=68.43 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=34.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 20 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 61 (228)
T cd03257 20 ALDDVSFSIKKGE--TLGLVGESGSGKSTLARAILGLLKPTSGS 61 (228)
T ss_pred eecCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 4555666666788 99999999999999999999987766554
No 25
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.04 E-value=8.5e-07 Score=69.01 Aligned_cols=42 Identities=31% Similarity=0.469 Sum_probs=33.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 36 il~~vs~~i~~Ge--~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~ 77 (236)
T cd03267 36 ALKGISFTIEKGE--IVGFIGPNGAGKTTTLKILSGLLQPTSGE 77 (236)
T ss_pred eeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence 4445555556677 99999999999999999999987665554
No 26
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.03 E-value=9.1e-07 Score=68.95 Aligned_cols=42 Identities=31% Similarity=0.431 Sum_probs=33.5
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 16 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~ 57 (241)
T cd03256 16 ALKDVSLSINPGE--FVALIGPSGAGKSTLLRCLNGLVEPTSGS 57 (241)
T ss_pred EEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCCce
Confidence 4455555566678 99999999999999999999987665554
No 27
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.02 E-value=7.7e-07 Score=69.36 Aligned_cols=42 Identities=29% Similarity=0.367 Sum_probs=33.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 17 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~ 58 (239)
T cd03296 17 ALDDVSLDIPSGE--LVALLGPSGSGKTTLLRLIAGLERPDSGT 58 (239)
T ss_pred eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 4555555566777 99999999999999999999987665553
No 28
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.02 E-value=2.3e-06 Score=65.49 Aligned_cols=42 Identities=31% Similarity=0.363 Sum_probs=34.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 17 il~~is~~i~~G~--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~ 58 (214)
T TIGR02673 17 ALHDVSLHIRKGE--FLFLTGPSGAGKTTLLKLLYGALTPSRGQ 58 (214)
T ss_pred eecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 4556666667788 99999999999999999999987665453
No 29
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.02 E-value=1.1e-06 Score=69.88 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 15 ~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 57 (271)
T PRK13638 15 PVLKGLNLDFSLSP--VTGLVGANGCGKSTLFMNLSGLLRPQKGA 57 (271)
T ss_pred ccccceEEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCccE
Confidence 35556666666777 99999999999999999999987776554
No 30
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=8.1e-07 Score=68.33 Aligned_cols=42 Identities=26% Similarity=0.450 Sum_probs=33.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 19 il~~vs~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~ 60 (220)
T cd03293 19 ALEDISLSVEEGE--FVALVGPSGCGKSTLLRIIAGLERPTSGE 60 (220)
T ss_pred EEeceeEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 3445555566677 99999999999999999999987665553
No 31
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.00 E-value=8.7e-07 Score=67.21 Aligned_cols=42 Identities=24% Similarity=0.397 Sum_probs=34.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+.+++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 16 il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~ 57 (200)
T PRK13540 16 LLQQISFHLPAGG--LLHLKGSNGAGKTTLLKLIAGLLNPEKGE 57 (200)
T ss_pred EEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCee
Confidence 4555555566778 99999999999999999999987776564
No 32
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=1.1e-06 Score=69.77 Aligned_cols=42 Identities=24% Similarity=0.401 Sum_probs=33.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 39 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~ 80 (269)
T cd03294 39 GVNDVSLDVREGE--IFVIMGLSGSGKSTLLRCINRLIEPTSGK 80 (269)
T ss_pred EeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence 3444555556677 99999999999999999999987765553
No 33
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.00 E-value=1.3e-06 Score=70.78 Aligned_cols=50 Identities=30% Similarity=0.386 Sum_probs=39.5
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+.||....++++...+.+++ .+.++||+|||||||.++|.+-..+.+|.
T Consensus 10 ~K~yg~~~~l~~i~l~i~~Ge--f~vllGPSGcGKSTlLr~IAGLe~~~~G~ 59 (338)
T COG3839 10 RKSFGSFEVLKDVNLDIEDGE--FVVLLGPSGCGKSTLLRMIAGLEEPTSGE 59 (338)
T ss_pred EEEcCCceeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 445554335666666777888 99999999999999999999998887664
No 34
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.00 E-value=1.5e-06 Score=67.44 Aligned_cols=42 Identities=26% Similarity=0.457 Sum_probs=33.9
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 20 il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~ 61 (233)
T cd03258 20 ALKDVSLSVPKGE--IFGIIGRSGAGKSTLIRCINGLERPTSGS 61 (233)
T ss_pred eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 4555555566778 99999999999999999999987776553
No 35
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.00 E-value=8.8e-07 Score=68.89 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=33.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 16 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~ 57 (236)
T TIGR03864 16 ALDDVSFTVRPGE--FVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57 (236)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence 3444555556677 99999999999999999999987776554
No 36
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.99 E-value=1.4e-06 Score=68.34 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=34.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 18 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 59 (250)
T PRK11264 18 VLHGIDLEVKPGE--VVAIIGPSGSGKTTLLRCINLLEQPEAGT 59 (250)
T ss_pred eeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence 4556666666788 99999999999999999999987665453
No 37
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.99 E-value=0.00031 Score=62.05 Aligned_cols=47 Identities=28% Similarity=0.331 Sum_probs=39.0
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|.+..+..+...+.......+.|+|++|+||||||+.+++...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 45788888888887777666566899999999999999999988764
No 38
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=97.99 E-value=6e-07 Score=73.57 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=40.8
Q ss_pred CCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 150 PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 150 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+.++.||....++++...+..++ +++++|+||+|||||++.|.+...+.+|.
T Consensus 46 nl~k~y~~~~~l~~is~~i~~Ge--i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~ 97 (340)
T PRK13536 46 GVSKSYGDKAVVNGLSFTVASGE--CFGLLGPNGAGKSTIARMILGMTSPDAGK 97 (340)
T ss_pred EEEEEECCEEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCceE
Confidence 34445665456667776777788 99999999999999999999988776554
No 39
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=97.99 E-value=1.1e-06 Score=70.98 Aligned_cols=48 Identities=21% Similarity=0.345 Sum_probs=37.2
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.||....++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 13 ~~~~~~~l~~vsl~i~~Ge--~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~ 60 (303)
T TIGR01288 13 SYGDKVVVNDLSFTIARGE--CFGLLGPNGAGKSTIARMLLGMISPDRGK 60 (303)
T ss_pred EeCCeEEEcceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 3443335666666677788 99999999999999999999987665553
No 40
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.99 E-value=1.5e-06 Score=68.49 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=33.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 16 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 57 (255)
T PRK11248 16 ALEDINLTLESGE--LLVVLGPSGCGKTTLLNLIAGFVPYQHGS 57 (255)
T ss_pred eEeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 3445555566678 99999999999999999999987765553
No 41
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.99 E-value=2.8e-06 Score=75.51 Aligned_cols=55 Identities=24% Similarity=0.339 Sum_probs=43.7
Q ss_pred cccCCCCccchH--HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 147 EERPIGKTVGLD--SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 147 ~~~~~~~~~g~~--~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
....++.-|+.+ ..++++...+..++ .|+|+|.+|+|||||+|++.+-..|..|.
T Consensus 473 ~~~nvsf~y~~~~~~vL~~isL~I~~Ge--~vaIvG~SGsGKSTL~KLL~gly~p~~G~ 529 (709)
T COG2274 473 EFENVSFRYGPDDPPVLEDLSLEIPPGE--KVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529 (709)
T ss_pred EEEEEEEEeCCCCcchhhceeEEeCCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 334445566654 57888888888899 99999999999999999999988876553
No 42
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.99 E-value=4.3e-06 Score=62.58 Aligned_cols=49 Identities=29% Similarity=0.390 Sum_probs=38.7
Q ss_pred Cccch-HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 153 KTVGL-DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 153 ~~~g~-~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+-||. -+.++++.....+++ +.+|.|+||.||||+.++|+.-..|.+|.
T Consensus 9 K~y~~~v~AvrdVSF~ae~Ge--i~GlLG~NGAGKTT~LRmiatlL~P~~G~ 58 (245)
T COG4555 9 KSYGSKVQAVRDVSFEAEEGE--ITGLLGENGAGKTTLLRMIATLLIPDSGK 58 (245)
T ss_pred hhccCHHhhhhheeEEeccce--EEEEEcCCCCCchhHHHHHHHhccCCCce
Confidence 34443 236667777777788 99999999999999999999998887553
No 43
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.98 E-value=1.3e-06 Score=66.43 Aligned_cols=42 Identities=24% Similarity=0.363 Sum_probs=33.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 16 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~ 57 (204)
T PRK13538 16 LFSGLSFTLNAGE--LVQIEGPNGAGKTSLLRILAGLARPDAGE 57 (204)
T ss_pred EEecceEEECCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 3445555566677 99999999999999999999987776553
No 44
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.98 E-value=1.2e-06 Score=77.58 Aligned_cols=50 Identities=26% Similarity=0.393 Sum_probs=40.1
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+..||....++++...+..++ +++|+|+||+|||||++.|.+...+.+|.
T Consensus 8 s~~~g~~~~l~~vs~~i~~Ge--~v~LvG~NGsGKSTLLkiL~G~~~pd~G~ 57 (638)
T PRK10636 8 QIRRGVRVLLDNATATINPGQ--KVGLVGKNGCGKSTLLALLKNEISADGGS 57 (638)
T ss_pred EEEeCCceeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 344565556777777777888 99999999999999999999987776564
No 45
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.98 E-value=5.4e-06 Score=63.53 Aligned_cols=42 Identities=24% Similarity=0.279 Sum_probs=34.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 18 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~ 59 (216)
T TIGR00960 18 ALDNLNFHITKGE--MVFLVGHSGAGKSTFLKLILGIEKPTRGK 59 (216)
T ss_pred EEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 4555656667788 99999999999999999999987765554
No 46
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.98 E-value=1.4e-06 Score=66.31 Aligned_cols=50 Identities=28% Similarity=0.339 Sum_probs=39.6
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
...||.-..+..+...+..++ +++++|.||+|||||.+.|.+-.++.+|.
T Consensus 10 ~~~YG~~~~L~gvsl~v~~Ge--iv~llG~NGaGKTTlLkti~Gl~~~~~G~ 59 (237)
T COG0410 10 SAGYGKIQALRGVSLEVERGE--IVALLGRNGAGKTTLLKTIMGLVRPRSGR 59 (237)
T ss_pred eecccceeEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCee
Confidence 345666556666666777788 99999999999999999999988775453
No 47
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.98 E-value=1.2e-06 Score=70.77 Aligned_cols=51 Identities=24% Similarity=0.308 Sum_probs=39.8
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+..||....++++...+..++ +++++|+||+|||||++.+.+-..+.+|.
T Consensus 13 l~k~~~~~~~l~~vsl~i~~Ge--i~gllGpNGaGKSTLl~~l~Gl~~p~~G~ 63 (306)
T PRK13537 13 VEKRYGDKLVVDGLSFHVQRGE--CFGLLGPNGAGKTTTLRMLLGLTHPDAGS 63 (306)
T ss_pred EEEEECCeEEEecceEEEeCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 3445554446667777777788 99999999999999999999988776553
No 48
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.98 E-value=2e-06 Score=66.49 Aligned_cols=52 Identities=31% Similarity=0.405 Sum_probs=42.6
Q ss_pred CCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 150 PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 150 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
++++.|+....++++...+.+++ .+.++|++|+||||+.++|+.-.++++|.
T Consensus 6 nvsk~y~~~~av~~v~l~I~~ge--f~vliGpSGsGKTTtLkMINrLiept~G~ 57 (309)
T COG1125 6 NVSKRYGNKKAVDDVNLTIEEGE--FLVLIGPSGSGKTTTLKMINRLIEPTSGE 57 (309)
T ss_pred eeehhcCCceeeeeeeEEecCCe--EEEEECCCCCcHHHHHHHHhcccCCCCce
Confidence 34566776667777777777888 99999999999999999999888877664
No 49
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.98 E-value=1.2e-06 Score=69.45 Aligned_cols=48 Identities=29% Similarity=0.375 Sum_probs=37.0
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++....++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 20 ~~~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~ 67 (265)
T PRK10575 20 RVPGRTLLHPLSLTFPAGK--VTGLIGHNGSGKSTLLKMLGRHQPPSEGE 67 (265)
T ss_pred EECCEEEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCCE
Confidence 3443345666666677788 99999999999999999999987665553
No 50
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.98 E-value=2.1e-06 Score=66.38 Aligned_cols=42 Identities=29% Similarity=0.366 Sum_probs=33.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|++-..+.+|.
T Consensus 25 ~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~ 66 (228)
T PRK10584 25 ILTGVELVVKRGE--TIALIGESGSGKSTLLAILAGLDDGSSGE 66 (228)
T ss_pred EEeccEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCee
Confidence 3455555566677 99999999999999999999987766554
No 51
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.98 E-value=1.5e-06 Score=66.77 Aligned_cols=42 Identities=29% Similarity=0.341 Sum_probs=33.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 20 il~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~ 61 (218)
T cd03266 20 AVDGVSFTVKPGE--VTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61 (218)
T ss_pred eecceEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCCce
Confidence 4555555566677 99999999999999999999987765554
No 52
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.98 E-value=1.6e-06 Score=68.19 Aligned_cols=45 Identities=27% Similarity=0.316 Sum_probs=34.2
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.+..|+....++++...+..++ +++|+|++|+|||||++.+.+-.
T Consensus 12 l~~~~~~~~il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 12 LSFFYGDFQALHDISLEFEQNQ--VTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred eEEEECCeeeecceeEEEeCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence 3334443345666666667788 99999999999999999999853
No 53
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.97 E-value=1.3e-06 Score=68.78 Aligned_cols=42 Identities=29% Similarity=0.375 Sum_probs=34.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+++...+.+|.
T Consensus 21 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 62 (258)
T PRK11701 21 GCRDVSFDLYPGE--VLGIVGESGSGKTTLLNALSARLAPDAGE 62 (258)
T ss_pred eeeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence 4555555566788 99999999999999999999987776564
No 54
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=97.97 E-value=8.7e-07 Score=69.62 Aligned_cols=41 Identities=24% Similarity=0.336 Sum_probs=32.1
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+.++...+..++ +++|+|++|+|||||++.|++...+.+|.
T Consensus 20 l~~vs~~i~~Ge--~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~ 60 (251)
T PRK09544 20 LSDVSLELKPGK--ILTLLGPNGAGKSTLVRVVLGLVAPDEGV 60 (251)
T ss_pred EEeEEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 334444455677 99999999999999999999987766553
No 55
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.96 E-value=1.7e-06 Score=67.47 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=33.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|
T Consensus 17 il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G 57 (242)
T PRK11124 17 ALFDITLDCPQGE--TLVLLGPSGAGKSSLLRVLNLLEMPRSG 57 (242)
T ss_pred eEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4455555566677 9999999999999999999998776555
No 56
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.96 E-value=2.2e-06 Score=65.66 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=47.2
Q ss_pred CccccCCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 145 PVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 145 ~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+........+|.....+++...+..++ +.+|+|++|+|||||.+.|.+-.+|++|.
T Consensus 8 ~I~vr~v~~~fG~~~Ild~v~l~V~~Ge--i~~iiGgSGsGKStlLr~I~Gll~P~~Ge 64 (263)
T COG1127 8 LIEVRGVTKSFGDRVILDGVDLDVPRGE--ILAILGGSGSGKSTLLRLILGLLRPDKGE 64 (263)
T ss_pred eEEEeeeeeecCCEEEecCceeeecCCc--EEEEECCCCcCHHHHHHHHhccCCCCCCe
Confidence 3444455667788888888888888899 99999999999999999999998887664
No 57
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.96 E-value=4.8e-05 Score=62.24 Aligned_cols=46 Identities=20% Similarity=0.374 Sum_probs=39.7
Q ss_pred CccchHHHHHHHHHhhhc------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 153 KTVGLDSIISEVWRCIED------HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++|.++.+++++.++.. ...+++.++|++|+||||||+.+.+...
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 689999999999999875 2356899999999999999999987763
No 58
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.96 E-value=1.8e-06 Score=67.35 Aligned_cols=42 Identities=29% Similarity=0.426 Sum_probs=33.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 18 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 59 (241)
T PRK14250 18 ILKDISVKFEGGA--IYTIVGPSGAGKSTLIKLINRLIDPTEGS 59 (241)
T ss_pred eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 4455555566677 99999999999999999999987766554
No 59
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.96 E-value=3.4e-06 Score=61.76 Aligned_cols=51 Identities=27% Similarity=0.336 Sum_probs=43.5
Q ss_pred CCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 150 PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 150 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
..++.||...-..++...|..++ |.+|||.+|+|||||.+.|.....|+.|
T Consensus 11 ~lsk~Yg~~~gc~~vsF~l~PGe--VLgiVGESGSGKtTLL~~is~rl~p~~G 61 (258)
T COG4107 11 GLSKLYGPGKGCRDVSFDLYPGE--VLGIVGESGSGKTTLLKCISGRLTPDAG 61 (258)
T ss_pred hhhhhhCCCcCccccceeecCCc--EEEEEecCCCcHHhHHHHHhcccCCCCC
Confidence 34667887777888888888999 9999999999999999999988877644
No 60
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.95 E-value=1.1e-06 Score=69.83 Aligned_cols=42 Identities=21% Similarity=0.437 Sum_probs=33.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 22 il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 63 (269)
T PRK11831 22 IFDNISLTVPRGK--ITAIMGPSGIGKTTLLRLIGGQIAPDHGE 63 (269)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 3444555555677 99999999999999999999987765553
No 61
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=97.95 E-value=2e-06 Score=76.13 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=39.2
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+..||....++++...+..++ +++|+|+||+|||||++.|.+...+.+|.
T Consensus 319 ~~~y~~~~il~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~ 368 (638)
T PRK10636 319 SAGYGDRIILDSIKLNLVPGS--RIGLLGRNGAGKSTLIKLLAGELAPVSGE 368 (638)
T ss_pred EEEeCCeeeeccceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence 334554445666666677788 99999999999999999999988776564
No 62
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.94 E-value=2.1e-06 Score=69.76 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=35.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 41 ~L~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~ 82 (320)
T PRK13631 41 ALNNISYTFEKNK--IYFIIGNSGSGKSTLVTHFNGLIKSKYGT 82 (320)
T ss_pred ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence 5666666667788 99999999999999999999988776554
No 63
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.94 E-value=2.1e-06 Score=67.78 Aligned_cols=42 Identities=24% Similarity=0.497 Sum_probs=34.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 17 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~p~~G~ 58 (258)
T PRK13548 17 LLDDVSLTLRPGE--VVAILGPNGAGKSTLLRALSGELSPDSGE 58 (258)
T ss_pred eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence 4555666666788 99999999999999999999987765553
No 64
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.94 E-value=1.2e-06 Score=66.77 Aligned_cols=42 Identities=24% Similarity=0.301 Sum_probs=33.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 17 ~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 58 (207)
T PRK13539 17 LFSGLSFTLAAGE--ALVLTGPNGSGKTTLLRLIAGLLPPAAGT 58 (207)
T ss_pred EEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 3455555566677 99999999999999999999987665553
No 65
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.93 E-value=7.4e-06 Score=62.98 Aligned_cols=42 Identities=26% Similarity=0.383 Sum_probs=33.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|++...+.+|.
T Consensus 20 ~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~ 61 (221)
T TIGR02211 20 VLKGVSLSIGKGE--IVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61 (221)
T ss_pred eEeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 4455555666778 99999999999999999999987765553
No 66
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=7.2e-06 Score=68.13 Aligned_cols=44 Identities=32% Similarity=0.441 Sum_probs=34.5
Q ss_pred chHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCC
Q 037945 156 GLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTE 201 (206)
Q Consensus 156 g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~ 201 (206)
|....+.++-.-+.-+. .|+|||++|+|||||.+++.+...|..
T Consensus 598 gqkpLFkkldFGiDmdS--RiaIVGPNGVGKSTlLkLL~Gkl~P~~ 641 (807)
T KOG0066|consen 598 GQKPLFKKLDFGIDMDS--RIAIVGPNGVGKSTLLKLLIGKLDPND 641 (807)
T ss_pred CCCchhhcccccccccc--eeEEECCCCccHHHHHHHHhcCCCCCc
Confidence 55556666655554455 999999999999999999999887753
No 67
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.93 E-value=1.7e-06 Score=67.49 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=33.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+.++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 18 ~l~~~sl~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G~ 59 (241)
T PRK10895 18 VVEDVSLTVNSGE--IVGLLGPNGAGKTTTFYMVVGIVPRDAGN 59 (241)
T ss_pred EEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 4455555666778 99999999999999999999987665553
No 68
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.92 E-value=2.1e-06 Score=65.57 Aligned_cols=49 Identities=31% Similarity=0.424 Sum_probs=39.5
Q ss_pred CCcc-chHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 152 GKTV-GLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 152 ~~~~-g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+..| |....++++...+..++ .|+|+|++|+|||||.+.+.+-..+.+|
T Consensus 10 ~k~yp~~~~aL~~Vnl~I~~GE--~VaiIG~SGaGKSTLLR~lngl~d~t~G 59 (258)
T COG3638 10 SKTYPGGHQALKDVNLEINQGE--MVAIIGPSGAGKSTLLRSLNGLVDPTSG 59 (258)
T ss_pred eeecCCCceeeeeEeEEeCCCc--EEEEECCCCCcHHHHHHHHhcccCCCcc
Confidence 3444 66667777777788889 9999999999999999999987766544
No 69
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.92 E-value=7.2e-06 Score=62.70 Aligned_cols=42 Identities=26% Similarity=0.282 Sum_probs=34.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 16 ~l~~~sl~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 57 (214)
T cd03292 16 ALDGINISISAGE--FVFLVGPSGAGKSTLLKLIYKEELPTSGT 57 (214)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 4555656666788 99999999999999999999987765553
No 70
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.92 E-value=2.4e-06 Score=67.16 Aligned_cols=42 Identities=26% Similarity=0.311 Sum_probs=34.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 18 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 59 (253)
T TIGR02323 18 GCRDVSFDLYPGE--VLGIVGESGSGKSTLLGCLAGRLAPDHGT 59 (253)
T ss_pred EeecceEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 4555666666788 99999999999999999999987665553
No 71
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.92 E-value=1.6e-06 Score=66.89 Aligned_cols=46 Identities=30% Similarity=0.367 Sum_probs=34.4
Q ss_pred cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
||....++++...+..++ +++|+|++|+|||||++.+.+...+.+|
T Consensus 32 ~~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G 77 (224)
T cd03220 32 VGEFWALKDVSFEVPRGE--RIGLIGRNGAGKSTLLRLLAGIYPPDSG 77 (224)
T ss_pred cCCeEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 333334445555555677 9999999999999999999998766545
No 72
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.91 E-value=1.9e-06 Score=67.90 Aligned_cols=42 Identities=31% Similarity=0.419 Sum_probs=34.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 16 il~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~ 57 (256)
T TIGR03873 16 IVDGVDVTAPPGS--LTGLLGPNGSGKSTLLRLLAGALRPDAGT 57 (256)
T ss_pred EEeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCCE
Confidence 4555555666778 99999999999999999999987766563
No 73
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.90 E-value=4e-06 Score=64.66 Aligned_cols=42 Identities=26% Similarity=0.425 Sum_probs=33.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 23 il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~ 64 (224)
T TIGR02324 23 VLKNVSLTVNAGE--CVALSGPSGAGKSTLLKSLYANYLPDSGR 64 (224)
T ss_pred EEecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence 3455555566777 99999999999999999999987765553
No 74
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.90 E-value=3.2e-06 Score=72.72 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=38.0
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.||....++++...+..++ +++|+|++|+|||||++.+++...+.+|.
T Consensus 12 ~~~~~~il~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~G~~~p~~G~ 59 (490)
T PRK10938 12 RLSDTKTLQLPSLTLNAGD--SWAFVGANGSGKSALARALAGELPLLSGE 59 (490)
T ss_pred EcCCeeecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCce
Confidence 4443346667777777788 99999999999999999999987765554
No 75
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.90 E-value=2.5e-06 Score=66.60 Aligned_cols=41 Identities=27% Similarity=0.348 Sum_probs=32.4
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 17 l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 57 (242)
T cd03295 17 VNNLNLEIAKGE--FLVLIGPSGSGKTTTMKMINRLIEPTSGE 57 (242)
T ss_pred eeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 444445555677 99999999999999999999987765553
No 76
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.89 E-value=1.8e-06 Score=67.84 Aligned_cols=41 Identities=24% Similarity=0.438 Sum_probs=33.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.++++...+..++ +++|+|++|+|||||++.|++..++.+|
T Consensus 20 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 60 (255)
T PRK11300 20 AVNNVNLEVREQE--IVSLIGPNGAGKTTVFNCLTGFYKPTGG 60 (255)
T ss_pred EEEeeeeEEcCCe--EEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence 4455555566677 9999999999999999999998776655
No 77
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.89 E-value=6.8e-06 Score=60.92 Aligned_cols=44 Identities=30% Similarity=0.326 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 158 DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 158 ~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
...+.++...+..++ .+=++|++|+|||||.++||...++++|+
T Consensus 15 ~~aL~~vs~~i~~Ge--f~fl~GpSGAGKSTllkLi~~~e~pt~G~ 58 (223)
T COG2884 15 REALRDVSFHIPKGE--FVFLTGPSGAGKSTLLKLIYGEERPTRGK 58 (223)
T ss_pred chhhhCceEeecCce--EEEEECCCCCCHHHHHHHHHhhhcCCCce
Confidence 447778888888888 89999999999999999999999987664
No 78
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.89 E-value=2.3e-06 Score=75.82 Aligned_cols=50 Identities=22% Similarity=0.336 Sum_probs=38.5
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+..||....++++...+..++ +++|+|+||+|||||++.|++...+.+|.
T Consensus 326 ~~~~~~~~il~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~l~G~~~p~~G~ 375 (635)
T PRK11147 326 NYQIDGKQLVKDFSAQVQRGD--KIALIGPNGCGKTTLLKLMLGQLQADSGR 375 (635)
T ss_pred EEEECCeEEEcCcEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence 334554445666666667788 99999999999999999999987776564
No 79
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.89 E-value=9.9e-06 Score=59.60 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=33.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 16 ~l~~i~l~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 57 (166)
T cd03223 16 LLKDLSFEIKPGD--RLLITGPSGTGKSSLFRALAGLWPWGSGR 57 (166)
T ss_pred eeecCeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 3445555566778 99999999999999999999987776564
No 80
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.88 E-value=2.1e-06 Score=66.99 Aligned_cols=42 Identities=21% Similarity=0.367 Sum_probs=33.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+.+++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 17 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~p~~G~ 58 (242)
T TIGR03411 17 ALNDLSLYVDPGE--LRVIIGPNGAGKTTMMDVITGKTRPDEGS 58 (242)
T ss_pred EeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence 4445555566677 99999999999999999999987776564
No 81
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.88 E-value=3e-06 Score=66.08 Aligned_cols=41 Identities=27% Similarity=0.360 Sum_probs=32.9
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|
T Consensus 16 il~~~s~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~~~G 56 (240)
T PRK09493 16 VLHNIDLNIDQGE--VVVIIGPSGSGKSTLLRCINKLEEITSG 56 (240)
T ss_pred EeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3445555566677 9999999999999999999998776555
No 82
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.88 E-value=5.7e-06 Score=63.42 Aligned_cols=42 Identities=29% Similarity=0.370 Sum_probs=33.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+..+...+..++ .++|+|++|+|||||...+..-..|++|.
T Consensus 20 ~L~~v~l~i~~Ge--~vaI~GpSGSGKSTLLniig~ld~pt~G~ 61 (226)
T COG1136 20 ALKDVNLEIEAGE--FVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61 (226)
T ss_pred ecccceEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence 3444555566788 99999999999999999999988776664
No 83
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.88 E-value=9.3e-06 Score=63.02 Aligned_cols=42 Identities=29% Similarity=0.399 Sum_probs=33.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 24 il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~ 65 (233)
T PRK11629 24 VLHNVSFSIGEGE--MMAIVGSSGSGKSTLLHLLGGLDTPTSGD 65 (233)
T ss_pred eEEeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 4455555566677 99999999999999999999987665453
No 84
>PRK10908 cell division protein FtsE; Provisional
Probab=97.87 E-value=4.4e-06 Score=64.36 Aligned_cols=42 Identities=26% Similarity=0.252 Sum_probs=33.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 17 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 58 (222)
T PRK10908 17 ALQGVTFHMRPGE--MAFLTGHSGAGKSTLLKLICGIERPSAGK 58 (222)
T ss_pred EEeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 3445555566677 99999999999999999999987766553
No 85
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=2.2e-06 Score=66.64 Aligned_cols=42 Identities=36% Similarity=0.439 Sum_probs=34.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 20 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~~G~ 61 (237)
T PRK11614 20 ALHEVSLHINQGE--IVTLIGANGAGKTTLLGTLCGDPRATSGR 61 (237)
T ss_pred eeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCce
Confidence 4555666666788 99999999999999999999987765553
No 86
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.87 E-value=5e-06 Score=61.46 Aligned_cols=42 Identities=29% Similarity=0.430 Sum_probs=33.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+-..+.+|.
T Consensus 17 ~l~~i~~~i~~G~--~~~l~G~nGsGKstLl~~i~G~~~~~~G~ 58 (171)
T cd03228 17 VLKDVSLTIKPGE--KVAIVGPSGSGKSTLLKLLLRLYDPTSGE 58 (171)
T ss_pred cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCCE
Confidence 4445555556677 99999999999999999999987765554
No 87
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.87 E-value=1.1e-05 Score=59.68 Aligned_cols=42 Identities=26% Similarity=0.474 Sum_probs=33.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+.+++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 15 ~l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~ 56 (173)
T cd03230 15 ALDDISLTVEKGE--IYGLLGPNGAGKTTLIKIILGLLKPDSGE 56 (173)
T ss_pred eeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 4455555666778 99999999999999999999987665454
No 88
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.87 E-value=2e-06 Score=75.12 Aligned_cols=50 Identities=26% Similarity=0.404 Sum_probs=39.0
Q ss_pred CCccc-hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 152 GKTVG-LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 152 ~~~~g-~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+..|| ....++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 13 ~~~y~~~~~il~~vs~~i~~Ge--~~~iiG~NGsGKSTLlk~i~G~~~p~~G~ 63 (556)
T PRK11819 13 SKVVPPKKQILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFEGE 63 (556)
T ss_pred EEEeCCCCeeeeCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 33454 3445666777777788 99999999999999999999987776564
No 89
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.87 E-value=3.7e-05 Score=59.57 Aligned_cols=40 Identities=20% Similarity=0.385 Sum_probs=30.3
Q ss_pred HHHHHHhhhc-CCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 161 ISEVWRCIED-HNEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 161 ~~~l~~~L~~-~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
++.+..+... +...+|+|.|++|+|||||++.+.+.....
T Consensus 20 ~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 20 LRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3344444444 456799999999999999999999877654
No 90
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.87 E-value=2.7e-06 Score=67.05 Aligned_cols=48 Identities=27% Similarity=0.417 Sum_probs=37.4
Q ss_pred CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
..+|....+.++...+..++ +++|+|++|+|||||++.|.+...+.+|
T Consensus 18 ~~~~~~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~iaG~~~~~~G 65 (257)
T PRK14246 18 LYINDKAILKDITIKIPNNS--IFGIMGPSGSGKSTLLKVLNRLIEIYDS 65 (257)
T ss_pred EecCCceeEeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCcC
Confidence 34455445666666667788 9999999999999999999998766544
No 91
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.86 E-value=1.4e-05 Score=59.16 Aligned_cols=42 Identities=26% Similarity=0.373 Sum_probs=33.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 17 ~l~~~~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~ 58 (173)
T cd03246 17 VLRNVSFSIEPGE--SLAIIGPSGSGKSTLARLILGLLRPTSGR 58 (173)
T ss_pred ceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCe
Confidence 3444545556677 99999999999999999999987766554
No 92
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.86 E-value=3.6e-06 Score=65.93 Aligned_cols=39 Identities=31% Similarity=0.383 Sum_probs=32.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
.++++...+..++ +++|+|++|+|||||++.+.+-..+.
T Consensus 16 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~p~ 54 (247)
T TIGR00972 16 ALKNINLDIPKNQ--VTALIGPSGCGKSTLLRSLNRMNDLV 54 (247)
T ss_pred eecceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCC
Confidence 4555666666788 99999999999999999999877654
No 93
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.86 E-value=2e-06 Score=65.31 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=30.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...
T Consensus 22 il~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 22 ILKDFSGVVKPGE--MVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred eeeeEEEEECCCc--EEEEECCCCCCHHHHHHHhcccCC
Confidence 3444555556677 999999999999999999999876
No 94
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.86 E-value=5.6e-06 Score=61.14 Aligned_cols=42 Identities=24% Similarity=0.361 Sum_probs=35.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++.++..|..++ -++|+|-+|+||||||+++.+-..|++|.
T Consensus 28 AV~~vSFtL~~~Q--TlaiIG~NGSGKSTLakMlaGmi~PTsG~ 69 (267)
T COG4167 28 AVKPVSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIEPTSGE 69 (267)
T ss_pred cccceEEEecCCc--EEEEEccCCCcHhHHHHHHhcccCCCCce
Confidence 4555666777788 99999999999999999999988887654
No 95
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.86 E-value=1.3e-05 Score=67.52 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=37.8
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 158 DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 158 ~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
...+..+...|..++ .++|+|++|+|||||++.+.+-+.+.+|.
T Consensus 349 ~pil~~isF~l~~G~--~lgIIGPSgSGKSTLaR~lvG~w~p~~G~ 392 (580)
T COG4618 349 KPILKGISFALQAGE--ALGIIGPSGSGKSTLARLLVGIWPPTSGS 392 (580)
T ss_pred CcceecceeEecCCc--eEEEECCCCccHHHHHHHHHcccccCCCc
Confidence 346677888888899 99999999999999999999998876553
No 96
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=97.86 E-value=2.3e-06 Score=75.81 Aligned_cols=49 Identities=27% Similarity=0.340 Sum_probs=38.2
Q ss_pred CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..+|....++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 11 ~~~~~~~il~~is~~i~~Ge--~v~LvG~NGsGKSTLLriiaG~~~p~~G~ 59 (635)
T PRK11147 11 LSFSDAPLLDNAELHIEDNE--RVCLVGRNGAGKSTLMKILNGEVLLDDGR 59 (635)
T ss_pred EEeCCceeEeCcEEEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCeE
Confidence 34454445666666777788 99999999999999999999987765553
No 97
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.86 E-value=3.6e-06 Score=67.15 Aligned_cols=42 Identities=29% Similarity=0.367 Sum_probs=33.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 22 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~ 63 (280)
T PRK13649 22 ALFDVNLTIEDGS--YTAFIGHTGSGKSTIMQLLNGLHVPTQGS 63 (280)
T ss_pred eeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 3445555566677 99999999999999999999987665554
No 98
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.86 E-value=1.2e-05 Score=58.96 Aligned_cols=42 Identities=26% Similarity=0.424 Sum_probs=33.4
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+.+++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 15 vl~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~ 56 (163)
T cd03216 15 ALDGVSLSVRRGE--VHALLGENGAGKSTLMKILSGLYKPDSGE 56 (163)
T ss_pred EEeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 3445555566788 99999999999999999999987765453
No 99
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.85 E-value=1.2e-05 Score=57.84 Aligned_cols=36 Identities=36% Similarity=0.491 Sum_probs=29.5
Q ss_pred HhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 166 RCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 166 ~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 21 ~~~~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~ 56 (144)
T cd03221 21 LTINPGD--RIGLVGRNGAGKSTLLKLIAGELEPDEGI 56 (144)
T ss_pred EEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCceE
Confidence 3344567 99999999999999999999987776553
No 100
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.85 E-value=4.1e-06 Score=72.18 Aligned_cols=51 Identities=27% Similarity=0.425 Sum_probs=43.0
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+..+|....++++...+.+++ .||+||.||+|||||.+.|.+...+.+|+
T Consensus 9 ls~~~g~~~l~~~~~l~~~~G~--riGLvG~NGaGKSTLLkilaG~~~~~~G~ 59 (530)
T COG0488 9 LSLAYGDRPLLENVSLTLNPGE--RIGLVGRNGAGKSTLLKILAGELEPDSGE 59 (530)
T ss_pred eEEeeCCceeecCCcceeCCCC--EEEEECCCCCCHHHHHHHHcCCCcCCCCe
Confidence 3445677778888888888889 99999999999999999999988776564
No 101
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.85 E-value=5.1e-06 Score=65.89 Aligned_cols=42 Identities=21% Similarity=0.348 Sum_probs=34.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 28 ~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~ 69 (267)
T PRK15112 28 AVKPLSFTLREGQ--TLAIIGENGSGKSTLAKMLAGMIEPTSGE 69 (267)
T ss_pred eeeeeeEEecCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCCCE
Confidence 4556666666788 99999999999999999999988776564
No 102
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.85 E-value=2.7e-06 Score=68.05 Aligned_cols=42 Identities=24% Similarity=0.400 Sum_probs=35.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+-..+.+|.
T Consensus 21 ~l~~vs~~i~~Ge--~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~ 62 (283)
T PRK13636 21 ALKGININIKKGE--VTAILGGNGAGKSTLFQNLNGILKPSSGR 62 (283)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCccE
Confidence 5566666677788 99999999999999999999987776564
No 103
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=97.85 E-value=3.2e-06 Score=66.76 Aligned_cols=43 Identities=26% Similarity=0.396 Sum_probs=33.7
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.|+....++++...+..++ +++|+|++|+|||||++.|.+...
T Consensus 22 ~~~~~~il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 64 (260)
T PRK10744 22 YYGKFHALKNINLDIAKNQ--VTAFIGPSGCGKSTLLRTFNRMYE 64 (260)
T ss_pred EeCCeEEeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcccc
Confidence 3443335566666677788 999999999999999999998754
No 104
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.84 E-value=6.2e-06 Score=63.40 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=34.5
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 19 ~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 60 (221)
T cd03244 19 VLKNISFSIKPGE--KVGIVGRTGSGKSSLLLALFRLVELSSGS 60 (221)
T ss_pred cccceEEEECCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCCE
Confidence 5566666666788 99999999999999999999987766554
No 105
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.84 E-value=2.3e-06 Score=67.46 Aligned_cols=42 Identities=26% Similarity=0.365 Sum_probs=33.4
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 20 ~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~ 61 (257)
T PRK10619 20 VLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINFLEKPSEGS 61 (257)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 4445555566677 99999999999999999999987765553
No 106
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.84 E-value=1.5e-05 Score=59.30 Aligned_cols=42 Identities=24% Similarity=0.445 Sum_probs=34.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 17 ~l~~i~~~i~~Ge--~~~i~G~nGsGKStLl~~l~G~~~~~~G~ 58 (178)
T cd03247 17 VLKNLSLELKQGE--KIALLGRSGSGKSTLLQLLTGDLKPQQGE 58 (178)
T ss_pred ceEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCE
Confidence 4455555566778 99999999999999999999987776564
No 107
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=4.2e-06 Score=67.04 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=34.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 22 ~l~~vsl~i~~Ge--~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~ 63 (287)
T PRK13641 22 GLDNISFELEEGS--FVALVGHTGSGKSTLMQHFNALLKPSSGT 63 (287)
T ss_pred ceeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 4555656666788 99999999999999999999988776564
No 108
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.84 E-value=6.1e-06 Score=65.34 Aligned_cols=42 Identities=29% Similarity=0.455 Sum_probs=34.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 26 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 67 (265)
T TIGR02769 26 VLTNVSLSIEEGE--TVGLLGRSGCGKSTLARLLLGLEKPAQGT 67 (265)
T ss_pred EeeCceeEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 4556666666788 99999999999999999999987776553
No 109
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.84 E-value=3.7e-06 Score=66.67 Aligned_cols=47 Identities=28% Similarity=0.438 Sum_probs=35.3
Q ss_pred cCCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 149 RPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 149 ~~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...+..|+....++++...+..++ +++|+|++|+|||||++.+.+-.
T Consensus 25 ~~l~~~~~~~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 25 KDLSIYYGEKRAVNDISMDIEKHA--VTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred EEEEEEeCCceeeeceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcc
Confidence 333444554445666666677788 99999999999999999998853
No 110
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.84 E-value=6.6e-06 Score=63.60 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=34.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 18 ~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~G~~~~~~G~ 59 (229)
T cd03254 18 VLKDINFSIKPGE--TVAIVGPTGAGKTTLINLLMRFYDPQKGQ 59 (229)
T ss_pred cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 5556666666788 99999999999999999999987765554
No 111
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.84 E-value=4.3e-06 Score=66.21 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=34.8
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
..++++...+..++ +++|+|++|+|||||++.|++...+.+|
T Consensus 21 ~~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G 62 (265)
T PRK10253 21 TVAENLTVEIPDGH--FTAIIGPNGCGKSTLLRTLSRLMTPAHG 62 (265)
T ss_pred EEeeecceEECCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 35666666677788 9999999999999999999998766545
No 112
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=3.7e-06 Score=66.18 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=33.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|
T Consensus 17 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 57 (255)
T PRK11231 17 ILNDLSLSLPTGK--ITALIGPNGCGKSTLLKCFARLLTPQSG 57 (255)
T ss_pred EEeeeeeEEcCCc--EEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 4555555566777 9999999999999999999998766545
No 113
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.84 E-value=3.1e-05 Score=60.87 Aligned_cols=49 Identities=22% Similarity=0.360 Sum_probs=41.0
Q ss_pred CCCccchHHHHHHHHHhhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 151 IGKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
...++|.+..++++.-.+.. ..+.=+-++||+|+||||||..|.+...+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv 78 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV 78 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC
Confidence 45689999999988877763 45678999999999999999999998754
No 114
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.84 E-value=4.7e-06 Score=63.98 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=33.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+.+++ +++|+|++|+|||||++.|++...+.+|.
T Consensus 16 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~ 57 (218)
T cd03290 16 TLSNINIRIPTGQ--LTMIVGQVGCGKSSLLLAILGEMQTLEGK 57 (218)
T ss_pred ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCe
Confidence 4555555566777 99999999999999999999987665553
No 115
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=97.83 E-value=5.1e-06 Score=64.67 Aligned_cols=42 Identities=24% Similarity=0.384 Sum_probs=33.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 18 ~l~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~G~~~~~~G~ 59 (238)
T cd03249 18 ILKGLSLTIPPGK--TVALVGSSGCGKSTVVSLLERFYDPTSGE 59 (238)
T ss_pred ceeceEEEecCCC--EEEEEeCCCCCHHHHHHHHhccCCCCCCE
Confidence 3444545556677 99999999999999999999987766564
No 116
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.83 E-value=6.8e-06 Score=63.42 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=34.5
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 29 ~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~ 70 (226)
T cd03248 29 VLQDVSFTLHPGE--VTALVGPSGSGKSTVVALLENFYQPQGGQ 70 (226)
T ss_pred cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCcE
Confidence 5556666666788 99999999999999999999987766554
No 117
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.82 E-value=2.8e-06 Score=73.43 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=38.8
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+..||....++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 17 l~~~~~~~~il~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~p~~G~ 67 (510)
T PRK15439 17 ISKQYSGVEVLKGIDFTLHAGE--VHALLGGNGAGKSTLMKIIAGIVPPDSGT 67 (510)
T ss_pred EEEEeCCceeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 3444554445666666667788 99999999999999999999987765554
No 118
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=97.82 E-value=7e-06 Score=63.09 Aligned_cols=42 Identities=29% Similarity=0.393 Sum_probs=33.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 19 ~l~~i~~~i~~G~--~~~i~G~nGsGKSTLl~~i~G~~~~~~G~ 60 (220)
T cd03245 19 ALDNVSLTIRAGE--KVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60 (220)
T ss_pred cccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCe
Confidence 4555555566778 99999999999999999999987665553
No 119
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.82 E-value=2.6e-06 Score=73.94 Aligned_cols=47 Identities=23% Similarity=0.413 Sum_probs=36.1
Q ss_pred cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
||....++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 11 ~~~~~il~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~Gl~~p~~G~ 57 (530)
T PRK15064 11 FGAKPLFENISVKFGGGN--RYGLIGANGCGKSTFMKILGGDLEPSAGN 57 (530)
T ss_pred eCCcEeEeCCEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 343335556666666788 99999999999999999999987665454
No 120
>PLN03073 ABC transporter F family; Provisional
Probab=97.82 E-value=7.4e-06 Score=73.34 Aligned_cols=52 Identities=17% Similarity=0.226 Sum_probs=39.0
Q ss_pred CCCCccc-hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 150 PIGKTVG-LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 150 ~~~~~~g-~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..+..|+ ....++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 513 ~ls~~y~~~~~il~~vsl~i~~Ge--~i~LvG~NGsGKSTLLk~L~Gll~p~~G~ 565 (718)
T PLN03073 513 DASFGYPGGPLLFKNLNFGIDLDS--RIAMVGPNGIGKSTILKLISGELQPSSGT 565 (718)
T ss_pred eeEEEeCCCCeeEeccEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCce
Confidence 3344453 2235666666677788 99999999999999999999987776554
No 121
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.82 E-value=5.8e-06 Score=65.03 Aligned_cols=44 Identities=23% Similarity=0.218 Sum_probs=34.8
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
.++....++++...+..++ +++|+|++|+|||||++.+.+-..+
T Consensus 16 ~~~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~ 59 (254)
T PRK14273 16 FYTDFKALNNINIKILKNS--ITALIGPSGCGKSTFLRTLNRMNDL 59 (254)
T ss_pred EeCCceeecceeeEEcCCC--EEEEECCCCCCHHHHHHHHhccccC
Confidence 3443345666666777788 9999999999999999999987654
No 122
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.82 E-value=4.6e-06 Score=66.42 Aligned_cols=42 Identities=26% Similarity=0.352 Sum_probs=34.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 20 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 61 (274)
T PRK13647 20 ALKGLSLSIPEGS--KTALLGPNGAGKSTLLLHLNGIYLPQRGR 61 (274)
T ss_pred eeeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCceE
Confidence 4555555666778 99999999999999999999987776564
No 123
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.82 E-value=2.5e-05 Score=65.81 Aligned_cols=47 Identities=28% Similarity=0.410 Sum_probs=38.2
Q ss_pred CCccchHHHHHH---HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISE---VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~---l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|.+..+.. +...+..+....+-++|++|+||||||+.+.+...
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~ 61 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD 61 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457888777655 77777777777888999999999999999988653
No 124
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.82 E-value=1.6e-05 Score=61.66 Aligned_cols=42 Identities=19% Similarity=0.317 Sum_probs=34.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 17 ~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 58 (234)
T cd03251 17 VLRDISLDIPAGE--TVALVGPSGSGKSTLVNLIPRFYDVDSGR 58 (234)
T ss_pred ceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhccccCCCCE
Confidence 4555666667788 99999999999999999999987776564
No 125
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=97.81 E-value=6.6e-06 Score=63.99 Aligned_cols=41 Identities=27% Similarity=0.434 Sum_probs=32.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|
T Consensus 17 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (237)
T cd03252 17 ILDNISLRIKPGE--VVGIVGRSGSGKSTLTKLIQRFYVPENG 57 (237)
T ss_pred ceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 3445555556677 9999999999999999999998766555
No 126
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=97.81 E-value=4.3e-06 Score=72.60 Aligned_cols=49 Identities=24% Similarity=0.359 Sum_probs=37.8
Q ss_pred CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..|+....++++...+..++ +++|+|++|+|||||++.|++...+.+|.
T Consensus 327 ~~~~~~~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G~ 375 (530)
T PRK15064 327 KGFDNGPLFKNLNLLLEAGE--RLAIIGENGVGKTTLLRTLVGELEPDSGT 375 (530)
T ss_pred EeeCCceeecCcEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 34554445666666666788 99999999999999999999987665453
No 127
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.81 E-value=3.6e-06 Score=72.59 Aligned_cols=48 Identities=21% Similarity=0.243 Sum_probs=36.7
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.|+....++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 13 ~~~~~~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G~ 60 (501)
T PRK10762 13 AFPGVKALSGAALNVYPGR--VMALVGENGAGKSTMMKVLTGIYTRDAGS 60 (501)
T ss_pred EeCCeEEeeeeeEEEcCCe--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 3443335566666666778 99999999999999999999987765554
No 128
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.80 E-value=1.6e-05 Score=63.39 Aligned_cols=42 Identities=14% Similarity=0.319 Sum_probs=34.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+++-..+.+|.
T Consensus 22 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 63 (279)
T PRK13650 22 TLNDVSFHVKQGE--WLSIIGHNGSGKSTTVRLIDGLLEAESGQ 63 (279)
T ss_pred eeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 4455555566778 99999999999999999999987776564
No 129
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.80 E-value=4.6e-06 Score=66.25 Aligned_cols=45 Identities=27% Similarity=0.386 Sum_probs=33.8
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
...|+....++++...+..++ +++|+|.+|+|||||++.|.+...
T Consensus 31 ~~~~~~~~il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 31 NLWYGEDHALKNINLDIHENE--VTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred EEEECCcceeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcc
Confidence 333443334555555666778 999999999999999999998764
No 130
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.80 E-value=7.8e-06 Score=62.13 Aligned_cols=42 Identities=17% Similarity=0.315 Sum_probs=34.9
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|.|++|+|||||++.|.+...+.+|.
T Consensus 20 il~~~s~~i~~G~--~~~i~G~nG~GKSTLl~~i~G~~~~~~G~ 61 (204)
T cd03250 20 TLKDINLEVPKGE--LVAIVGPVGSGKSSLLSALLGELEKLSGS 61 (204)
T ss_pred eeeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhCcCCCCCCe
Confidence 4556666667788 99999999999999999999987776664
No 131
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=97.80 E-value=1.7e-05 Score=62.78 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=65.8
Q ss_pred hhhhhhhhHhhhhhhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHH
Q 037945 8 IMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVDYIL 87 (206)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~wl~~l~~~~~~~ed~l 87 (206)
.++.+.++|-++..+....+..++++++.++++|+.|+.||+.+ ++...... ...+.+..++...+|++|.++
T Consensus 297 yVdFlL~NLkdfq~rysdSlaflKnQiqvIQ~elesLqpFLk~V------~ee~~nkh-~~~ed~a~~ii~kAyevEYVV 369 (402)
T PF12061_consen 297 YVDFLLKNLKDFQGRYSDSLAFLKNQIQVIQTELESLQPFLKHV------VEEPHNKH-DTNEDCATQIIRKAYEVEYVV 369 (402)
T ss_pred HHHHHHhhHHHHhccccchHHHHHHHHHHHHHHHHHhhHHHHHH------Hhccchhh-hhhhhHHHHHHHHHhheeeee
Confidence 45667777889999999999999999999999999999999986 45544444 338999999999999999999
Q ss_pred hhhhH
Q 037945 88 HRGDE 92 (206)
Q Consensus 88 d~~~~ 92 (206)
|.|..
T Consensus 370 DaCi~ 374 (402)
T PF12061_consen 370 DACIS 374 (402)
T ss_pred ehhhc
Confidence 99743
No 132
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.80 E-value=1.1e-05 Score=58.85 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=34.9
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+.+++..+..++ .|+|.||+|+|||||.+.|++-..+++|+
T Consensus 18 il~~isl~v~~Ge--~iaitGPSG~GKStllk~va~Lisp~~G~ 59 (223)
T COG4619 18 ILNNISLSVRAGE--FIAITGPSGCGKSTLLKIVASLISPTSGT 59 (223)
T ss_pred eecceeeeecCCc--eEEEeCCCCccHHHHHHHHHhccCCCCce
Confidence 4555666677788 99999999999999999999988777665
No 133
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.79 E-value=1.6e-05 Score=63.28 Aligned_cols=41 Identities=24% Similarity=0.348 Sum_probs=32.6
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 23 l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 63 (272)
T PRK15056 23 LRDASFTVPGGS--IAALVGVNGSGKSTLFKALMGFVRLASGK 63 (272)
T ss_pred EEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 444555556677 99999999999999999999987765554
No 134
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.79 E-value=3.9e-06 Score=66.59 Aligned_cols=43 Identities=30% Similarity=0.407 Sum_probs=33.3
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++....++++...+..++ +++|+|++|+|||||++.|.+...
T Consensus 22 ~~~~~~il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 22 SYGTFEAVKNVFCDIPRGK--VTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred EECCEEEEcceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccc
Confidence 3443335566666666788 999999999999999999998754
No 135
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=8.7e-06 Score=60.22 Aligned_cols=43 Identities=26% Similarity=0.425 Sum_probs=34.9
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..+.++...+..++ .+-|.|+||+|||||.+.|.+-.++.+|+
T Consensus 16 ~lf~~L~f~l~~Ge--~~~i~G~NG~GKTtLLRilaGLl~p~~G~ 58 (209)
T COG4133 16 TLFSDLSFTLNAGE--ALQITGPNGAGKTTLLRILAGLLRPDAGE 58 (209)
T ss_pred eeecceeEEEcCCC--EEEEECCCCCcHHHHHHHHHcccCCCCCe
Confidence 34455666666788 89999999999999999999988876664
No 136
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=97.79 E-value=4.9e-06 Score=68.23 Aligned_cols=42 Identities=26% Similarity=0.382 Sum_probs=34.5
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+-.++.+|.
T Consensus 20 ~L~~vsl~i~~Ge--i~gIiG~sGaGKSTLlr~I~gl~~p~~G~ 61 (343)
T TIGR02314 20 ALNNVSLHVPAGQ--IYGVIGASGAGKSTLIRCVNLLERPTSGS 61 (343)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 4555555666777 99999999999999999999988776564
No 137
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.79 E-value=1.7e-05 Score=63.13 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=34.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 17 ~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~ 58 (275)
T PRK13639 17 ALKGINFKAEKGE--MVALLGPNGAGKSTLFLHFNGILKPTSGE 58 (275)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCccE
Confidence 4556666677788 99999999999999999999987765554
No 138
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.77 E-value=4.5e-06 Score=72.13 Aligned_cols=50 Identities=28% Similarity=0.371 Sum_probs=38.1
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+..||....++++...+..++ +++|+|++|+|||||++.|.+-..+.+|.
T Consensus 12 ~~~~~~~~il~~vs~~i~~Ge--~~~liG~nGsGKSTLl~~i~Gl~~p~~G~ 61 (510)
T PRK09700 12 GKSFGPVHALKSVNLTVYPGE--IHALLGENGAGKSTLMKVLSGIHEPTKGT 61 (510)
T ss_pred EEEcCCeEEeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCcCCCccE
Confidence 334443345666766777788 99999999999999999999987665453
No 139
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.77 E-value=5.1e-06 Score=65.25 Aligned_cols=43 Identities=33% Similarity=0.450 Sum_probs=33.9
Q ss_pred cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
++....++++...+..++ +++|+|++|+|||||++.+.+...+
T Consensus 14 ~~~~~~l~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~~ 56 (253)
T PRK14267 14 YGSNHVIKGVDLKIPQNG--VFALMGPSGCGKSTLLRTFNRLLEL 56 (253)
T ss_pred eCCeeeeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCc
Confidence 333335566666677788 9999999999999999999987654
No 140
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.77 E-value=5.5e-06 Score=72.28 Aligned_cols=43 Identities=23% Similarity=0.419 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..++++...+..++ +++|+|++|+|||||++.|++...+.+|.
T Consensus 19 ~il~~is~~i~~Ge--~~~liG~NGsGKSTLl~~i~G~~~p~~G~ 61 (552)
T TIGR03719 19 EILKDISLSFFPGA--KIGVLGLNGAGKSTLLRIMAGVDKEFNGE 61 (552)
T ss_pred eeecCceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 35666766777788 99999999999999999999987766564
No 141
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.77 E-value=8e-06 Score=64.90 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=34.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 24 il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 65 (271)
T PRK13632 24 ALKNVSFEINEGE--YVAILGHNGSGKSTISKILTGLLKPQSGE 65 (271)
T ss_pred ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 4555555666778 99999999999999999999987765553
No 142
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.77 E-value=1e-06 Score=67.58 Aligned_cols=50 Identities=24% Similarity=0.408 Sum_probs=38.6
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
++.+|.-..++++...+..++ +++++||||.|||||.+.|-+..+|++|.
T Consensus 11 ~k~FGGl~Al~~Vsl~v~~Ge--i~~LIGPNGAGKTTlfNlitG~~~P~~G~ 60 (250)
T COG0411 11 SKRFGGLTAVNDVSLEVRPGE--IVGLIGPNGAGKTTLFNLITGFYKPSSGT 60 (250)
T ss_pred eeecCCEEEEeceeEEEcCCe--EEEEECCCCCCceeeeeeecccccCCCce
Confidence 344454445555666666777 99999999999999999999998887654
No 143
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.77 E-value=4.7e-06 Score=72.73 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=37.6
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++....++++...+..++ +++|+|++|+|||||++.+++...+.+|.
T Consensus 331 ~~~~~~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p~~G~ 378 (552)
T TIGR03719 331 GFGDKLLIDDLSFKLPPGG--IVGVIGPNGAGKSTLFRMITGQEQPDSGT 378 (552)
T ss_pred EECCeeeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCCCCCeE
Confidence 3444446666766677788 99999999999999999999987765553
No 144
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.77 E-value=2e-05 Score=62.36 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=30.2
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+...+..++ +++|+|++|+|||||++.+.+...+.+|
T Consensus 43 is~~i~~Ge--~~~liG~NGsGKSTLlk~L~Gl~~p~~G 79 (264)
T PRK13546 43 ISLKAYEGD--VIGLVGINGSGKSTLSNIIGGSLSPTVG 79 (264)
T ss_pred eEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 333455677 9999999999999999999998776555
No 145
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.76 E-value=1e-05 Score=61.56 Aligned_cols=42 Identities=26% Similarity=0.369 Sum_probs=33.9
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 23 ~l~~isl~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~ 64 (207)
T cd03369 23 VLKNVSFKVKAGE--KIGIVGRTGAGKSTLILALFRFLEAEEGK 64 (207)
T ss_pred cccCceEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCe
Confidence 4556655666778 99999999999999999999987665553
No 146
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.76 E-value=3.5e-06 Score=66.07 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=28.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.++++...+..++ +++|+|++|+|||||++.|.+-
T Consensus 18 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 18 ALKGISMEIEEKS--VVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred EEeeeeEEEeCCC--EEEEECCCCCCHHHHHHHHhhh
Confidence 3445555566678 9999999999999999999864
No 147
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=97.76 E-value=4.9e-06 Score=65.77 Aligned_cols=44 Identities=25% Similarity=0.368 Sum_probs=34.2
Q ss_pred cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
++....++++...+..++ +++|+|++|+|||||++.|.+...+.
T Consensus 14 ~~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~p~ 57 (262)
T PRK09984 14 FNQHQALHAVDLNIHHGE--MVALLGPSGSGKSTLLRHLSGLITGD 57 (262)
T ss_pred eCCeEEEecceEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCCC
Confidence 333334556666666788 99999999999999999999887653
No 148
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.76 E-value=2.4e-05 Score=60.75 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=34.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 16 ~l~~i~~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~ 57 (236)
T cd03253 16 VLKDVSFTIPAGK--KVAIVGPSGSGKSTILRLLFRFYDVSSGS 57 (236)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCE
Confidence 4555666667788 99999999999999999999987765553
No 149
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.76 E-value=9.6e-06 Score=63.37 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=35.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ ++++||.+|+|||||++.|.+-.++++|.
T Consensus 28 avd~Vsf~i~~ge--~~glVGESG~GKSTlgr~i~~L~~pt~G~ 69 (268)
T COG4608 28 AVDGVSFSIKEGE--TLGLVGESGCGKSTLGRLILGLEEPTSGE 69 (268)
T ss_pred EecceeEEEcCCC--EEEEEecCCCCHHHHHHHHHcCcCCCCce
Confidence 4556666777788 99999999999999999999988876553
No 150
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.76 E-value=0.00012 Score=61.63 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=38.5
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
...++.+..++.+...|..+. -|.+.|++|+||||+|+.++....
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~--~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKK--NIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhc
Confidence 456777888999999998777 788899999999999999987653
No 151
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=97.76 E-value=3.9e-06 Score=69.10 Aligned_cols=49 Identities=29% Similarity=0.436 Sum_probs=36.9
Q ss_pred CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..+|....++++...+..++ +++|+|++|+|||||++.|.+-..+.+|.
T Consensus 14 ~~~~~~~~l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~ 62 (351)
T PRK11432 14 KRFGSNTVIDNLNLTIKQGT--MVTLLGPSGCGKTTVLRLVAGLEKPTEGQ 62 (351)
T ss_pred EEECCeEEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCCCceE
Confidence 34443334555555666677 99999999999999999999988776554
No 152
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.75 E-value=2.2e-05 Score=62.61 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=34.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 19 ~l~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~ 60 (277)
T PRK13652 19 ALNNINFIAPRNS--RIAVIGPNGAGKSTLFRHFNGILKPTSGS 60 (277)
T ss_pred eeeEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 4556666667788 99999999999999999999987776564
No 153
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.75 E-value=4.9e-06 Score=65.61 Aligned_cols=37 Identities=32% Similarity=0.493 Sum_probs=30.9
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...
T Consensus 19 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 19 AVEDVNLNIEPRS--VTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred eeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhccCC
Confidence 4555656666788 999999999999999999999765
No 154
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.75 E-value=2.3e-05 Score=62.84 Aligned_cols=42 Identities=17% Similarity=0.263 Sum_probs=33.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 26 il~~is~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 67 (289)
T PRK13645 26 ALNNTSLTFKKNK--VTCVIGTTGSGKSTMIQLTNGLIISETGQ 67 (289)
T ss_pred eeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 4455555566677 99999999999999999999987765553
No 155
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.75 E-value=2.1e-05 Score=63.05 Aligned_cols=42 Identities=36% Similarity=0.533 Sum_probs=34.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+-..+.+|.
T Consensus 22 ~l~~vs~~i~~Ge--~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~ 63 (287)
T PRK13637 22 ALDNVNIEIEDGE--FVGLIGHTGSGKSTLIQHLNGLLKPTSGK 63 (287)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCccE
Confidence 4555555666788 99999999999999999999987776564
No 156
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.75 E-value=2.2e-05 Score=62.50 Aligned_cols=42 Identities=29% Similarity=0.445 Sum_probs=35.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+.++...+..++ +++|+|++|+|||||++.+++...+.+|.
T Consensus 17 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 58 (274)
T PRK13644 17 ALENINLVIKKGE--YIGIIGKNGSGKSTLALHLNGLLRPQKGK 58 (274)
T ss_pred eeeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 5566666777888 99999999999999999999987776554
No 157
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.75 E-value=8.4e-06 Score=64.69 Aligned_cols=42 Identities=21% Similarity=0.364 Sum_probs=34.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+.+++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 27 il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~ 68 (268)
T PRK10419 27 VLNNVSLSLKSGE--TVALLGRSGCGKSTLARLLVGLESPSQGN 68 (268)
T ss_pred eEeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 4555666666777 99999999999999999999987766554
No 158
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.75 E-value=6.9e-06 Score=65.32 Aligned_cols=39 Identities=36% Similarity=0.501 Sum_probs=31.9
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.
T Consensus 16 il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~laG~~~p~ 54 (272)
T PRK13547 16 ILRDLSLRIEPGR--VTALLGRNGAGKSTLLKALAGDLTGG 54 (272)
T ss_pred EEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCc
Confidence 4555655666777 99999999999999999999987653
No 159
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.75 E-value=2.3e-05 Score=62.78 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=34.4
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+++...+.+|.
T Consensus 22 ~l~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~ 63 (286)
T PRK13646 22 AIHDVNTEFEQGK--YYAIVGQTGSGKSTLIQNINALLKPTTGT 63 (286)
T ss_pred ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 4555656666788 99999999999999999999987776553
No 160
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=2.2e-05 Score=62.30 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=33.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.++++...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 24 ~l~~isl~i~~Ge--~~~I~G~nGsGKSTLl~~i~Gl~~~~~G 64 (269)
T PRK13648 24 TLKDVSFNIPKGQ--WTSIVGHNGSGKSTIAKLMIGIEKVKSG 64 (269)
T ss_pred ceeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 4455555566788 9999999999999999999998776555
No 161
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=97.74 E-value=2.1e-05 Score=64.61 Aligned_cols=42 Identities=29% Similarity=0.406 Sum_probs=33.9
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+-..+.+|.
T Consensus 20 il~~vsl~i~~Ge--i~~iiG~nGsGKSTLlk~L~Gl~~p~~G~ 61 (343)
T PRK11153 20 ALNNVSLHIPAGE--IFGVIGASGAGKSTLIRCINLLERPTSGR 61 (343)
T ss_pred EEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence 3455555666788 99999999999999999999987776553
No 162
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.74 E-value=5.4e-06 Score=65.99 Aligned_cols=44 Identities=27% Similarity=0.295 Sum_probs=33.6
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...++....++++...+..++ +++|+|++|+|||||++.|.+-.
T Consensus 27 ~~~~~~~~~l~~vs~~i~~Ge--~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 27 KVFYGGFLALVDVHLKIPAKK--IIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred EEEeCCeEEEeeeeeEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 334443335566666666788 99999999999999999999764
No 163
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.74 E-value=1.1e-05 Score=62.29 Aligned_cols=37 Identities=32% Similarity=0.578 Sum_probs=30.5
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...
T Consensus 22 ~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 22 ILNDVSLHVESGQ--VMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cccCceEEEcCCe--EEEEECCCCCCHHHHHHHHhCccC
Confidence 4555555566677 999999999999999999998876
No 164
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.74 E-value=7e-06 Score=64.38 Aligned_cols=37 Identities=32% Similarity=0.499 Sum_probs=31.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...
T Consensus 18 ~l~~is~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 18 VLDGVNLEIPDNT--ITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred eeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhccCC
Confidence 4556666667788 999999999999999999998765
No 165
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.74 E-value=9.8e-06 Score=64.76 Aligned_cols=42 Identities=24% Similarity=0.399 Sum_probs=33.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|++...+.+|+
T Consensus 52 vL~~vs~~i~~Ge--~~~liG~NGsGKSTLl~~I~Gl~~p~~G~ 93 (282)
T cd03291 52 VLKNINLKIEKGE--MLAITGSTGSGKTSLLMLILGELEPSEGK 93 (282)
T ss_pred ceeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 4555555566677 99999999999999999999987776553
No 166
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.73 E-value=2.4e-05 Score=62.42 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=34.4
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 22 ~l~~vsl~i~~Ge--~~~i~G~nGaGKSTLl~~i~G~~~p~~G~ 63 (279)
T PRK13635 22 ALKDVSFSVYEGE--WVAIVGHNGSGKSTLAKLLNGLLLPEAGT 63 (279)
T ss_pred ceeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence 4555555566778 99999999999999999999988776664
No 167
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=97.73 E-value=5.7e-06 Score=68.62 Aligned_cols=42 Identities=26% Similarity=0.316 Sum_probs=33.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 18 vl~~vsl~i~~Ge--~~~l~G~nGsGKSTLL~~iaGl~~p~~G~ 59 (369)
T PRK11000 18 ISKDINLDIHEGE--FVVFVGPSGCGKSTLLRMIAGLEDITSGD 59 (369)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence 3445555566677 99999999999999999999987776553
No 168
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.73 E-value=5.1e-06 Score=71.64 Aligned_cols=48 Identities=25% Similarity=0.292 Sum_probs=36.5
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.|+....++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 13 ~~~~~~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 60 (501)
T PRK11288 13 TFPGVKALDDISFDCRAGQ--VHALMGENGAGKSTLLKILSGNYQPDAGS 60 (501)
T ss_pred EECCEEEEeeeeEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence 3443335566666666788 99999999999999999999987665453
No 169
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.73 E-value=6.6e-06 Score=62.12 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=33.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh--cCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF--RDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~--~~~~~~ 203 (206)
.+.++...+..++ +++|+|++|+|||||++.|.+.. .+.+|.
T Consensus 24 ~l~~~~~~i~~Ge--~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~ 67 (194)
T cd03213 24 LLKNVSGKAKPGE--LTAIMGPSGAGKSTLLNALAGRRTGLGVSGE 67 (194)
T ss_pred ceecceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCCceE
Confidence 4555555666677 99999999999999999999987 665454
No 170
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.73 E-value=1.6e-05 Score=69.81 Aligned_cols=42 Identities=21% Similarity=0.301 Sum_probs=35.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ .++|+|++|+|||||++.+.+...|.+|.
T Consensus 358 il~~i~l~i~~G~--~~aIvG~sGsGKSTLl~ll~gl~~p~~G~ 399 (582)
T PRK11176 358 ALRNINFKIPAGK--TVALVGRSGSGKSTIANLLTRFYDIDEGE 399 (582)
T ss_pred cccCceEEeCCCC--EEEEECCCCCCHHHHHHHHHhccCCCCce
Confidence 5666777777788 99999999999999999999998886564
No 171
>PTZ00202 tuzin; Provisional
Probab=97.73 E-value=0.00011 Score=61.59 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=40.0
Q ss_pred ccCCCCccchHHHHHHHHHhhhc---CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 148 ERPIGKTVGLDSIISEVWRCIED---HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 148 ~~~~~~~~g~~~~~~~l~~~L~~---~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
|.+...++||+.+...+...|.+ +...++.|.|++|+|||||++.+....
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l 310 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKE 310 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcC
Confidence 33446689999999999888864 234589999999999999999988654
No 172
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.73 E-value=1.2e-05 Score=69.61 Aligned_cols=42 Identities=17% Similarity=0.308 Sum_probs=33.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 278 ~l~~isl~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~ 319 (510)
T PRK09700 278 KVRDISFSVCRGE--ILGFAGLVGSGRTELMNCLFGVDKRAGGE 319 (510)
T ss_pred cccceeEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCcCCCCe
Confidence 4555655566678 99999999999999999999987665554
No 173
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.73 E-value=4.9e-06 Score=65.62 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=29.4
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.+.++...+..++ +++|+|++|+|||||++.|.+...
T Consensus 27 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 27 ALKNINLSIPENE--VTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred eEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcc
Confidence 3444444555677 999999999999999999998754
No 174
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.72 E-value=8.5e-06 Score=63.84 Aligned_cols=39 Identities=31% Similarity=0.343 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
..++++...+..++ +++|+|++|+|||||++.|.+...+
T Consensus 17 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~ 55 (249)
T PRK14253 17 QALKSINLPIPARQ--VTALIGPSGCGKSTLLRCLNRMNDL 55 (249)
T ss_pred eeeecceEEecCCC--EEEEECCCCCCHHHHHHHHHhhccc
Confidence 34556666667788 9999999999999999999987654
No 175
>PRK13409 putative ATPase RIL; Provisional
Probab=97.72 E-value=2.7e-05 Score=68.39 Aligned_cols=49 Identities=24% Similarity=0.382 Sum_probs=37.8
Q ss_pred CccchH-HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC
Q 037945 153 KTVGLD-SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDF 204 (206)
Q Consensus 153 ~~~g~~-~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~F 204 (206)
..||.. ..+.++. .+..++ +++|+|+||+|||||++.+.+...+..|.+
T Consensus 81 ~~yg~~~~~L~~l~-~i~~Ge--v~gLvG~NGaGKSTLlkiL~G~l~p~~G~i 130 (590)
T PRK13409 81 HRYGVNGFKLYGLP-IPKEGK--VTGILGPNGIGKTTAVKILSGELIPNLGDY 130 (590)
T ss_pred EEecCCceeEecCC-cCCCCC--EEEEECCCCCCHHHHHHHHhCCccCCCccc
Confidence 345542 2455565 566678 999999999999999999999888776764
No 176
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.72 E-value=2.6e-05 Score=63.00 Aligned_cols=42 Identities=26% Similarity=0.358 Sum_probs=34.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 22 ~l~~vsl~i~~Ge--~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~ 63 (305)
T PRK13651 22 ALDNVSVEINQGE--FIAIIGQTGSGKTTFIEHLNALLLPDTGT 63 (305)
T ss_pred ceeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence 4555555666788 99999999999999999999988776554
No 177
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.72 E-value=7.5e-06 Score=71.51 Aligned_cols=48 Identities=21% Similarity=0.393 Sum_probs=38.0
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.||....++++...+..++ +++|+|++|+|||||++.|++...+.+|.
T Consensus 333 ~~~~~~~l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~G~~~p~~G~ 380 (556)
T PRK11819 333 SFGDRLLIDDLSFSLPPGG--IVGIIGPNGAGKSTLFKMITGQEQPDSGT 380 (556)
T ss_pred EECCeeeecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 3444446677777777788 99999999999999999999987765553
No 178
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.72 E-value=2.7e-05 Score=62.42 Aligned_cols=42 Identities=29% Similarity=0.389 Sum_probs=34.4
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 21 ~l~~vsl~i~~Ge--~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 62 (288)
T PRK13643 21 ALFDIDLEVKKGS--YTALIGHTGSGKSTLLQHLNGLLQPTEGK 62 (288)
T ss_pred ceeeeEEEEcCCC--EEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 4555556666788 99999999999999999999988776553
No 179
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.72 E-value=7.1e-06 Score=64.23 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=31.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh--cCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF--RDTEH 202 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~--~~~~~ 202 (206)
.+.++...+..++ +++|+|++|+|||||++.|.+.. .+.+|
T Consensus 16 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G 58 (248)
T PRK09580 16 ILRGLNLEVRPGE--VHAIMGPNGSGKSTLSATLAGREDYEVTGG 58 (248)
T ss_pred eeecceeEEcCCC--EEEEECCCCCCHHHHHHHHcCCccCCCCce
Confidence 4455555566677 99999999999999999999973 34445
No 180
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.72 E-value=2.4e-05 Score=63.11 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=34.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 17 ~l~~is~~i~~Ge--i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~ 58 (301)
T TIGR03522 17 ALDEVSFEAQKGR--IVGFLGPNGAGKSTTMKIITGYLPPDSGS 58 (301)
T ss_pred EEEEeEEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 4555555666778 99999999999999999999987776553
No 181
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=97.71 E-value=1.2e-05 Score=63.24 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=31.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+
T Consensus 18 il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~ 55 (254)
T PRK10418 18 LVHGVSLTLQRGR--VLALVGGSGSGKSLTCAAALGILPA 55 (254)
T ss_pred eecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 4455555566678 9999999999999999999998765
No 182
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.71 E-value=3.7e-06 Score=66.65 Aligned_cols=37 Identities=30% Similarity=0.369 Sum_probs=30.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...
T Consensus 34 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 34 ALFDVDLDIPEKT--VTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred EEEEEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcc
Confidence 4445555566677 999999999999999999999764
No 183
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.71 E-value=5.5e-05 Score=61.77 Aligned_cols=47 Identities=28% Similarity=0.400 Sum_probs=37.9
Q ss_pred CCccchHHHHHHHHHhhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|++..++.+...+.. .....+-++|++|+||||||+.+.+...
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~ 76 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG 76 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhC
Confidence 4589999888888776652 3355788999999999999999988753
No 184
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.70 E-value=2.4e-05 Score=62.78 Aligned_cols=42 Identities=29% Similarity=0.419 Sum_probs=33.9
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 22 ~L~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 63 (290)
T PRK13634 22 ALYDVNVSIPSGS--YVAIIGHTGSGKSTLLQHLNGLLQPTSGT 63 (290)
T ss_pred ceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence 4455555566788 99999999999999999999987776554
No 185
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.70 E-value=2.1e-05 Score=59.45 Aligned_cols=45 Identities=31% Similarity=0.427 Sum_probs=36.9
Q ss_pred cCCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHh
Q 037945 149 RPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 149 ~~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~ 195 (206)
.+....||....++++.-.+..+. |.+++||+|+|||||.+.+..
T Consensus 11 ~~l~~yYg~~~aL~~i~l~i~~~~--VTAlIGPSGcGKST~LR~lNR 55 (253)
T COG1117 11 RDLNLYYGDKHALKDINLDIPKNK--VTALIGPSGCGKSTLLRCLNR 55 (253)
T ss_pred cceeEEECchhhhccCceeccCCc--eEEEECCCCcCHHHHHHHHHh
Confidence 344567888878888877777777 999999999999999998764
No 186
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.70 E-value=6.9e-06 Score=65.13 Aligned_cols=45 Identities=27% Similarity=0.319 Sum_probs=33.9
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
...++....++++...+..++ +++|+|++|+|||||++.+++...
T Consensus 27 ~~~~~~~~il~~vsl~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 27 HVYYGKKEAIKGIDMQFEKNK--ITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred EEEECCeeeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhccC
Confidence 333443334555656666788 999999999999999999999764
No 187
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.70 E-value=5.6e-05 Score=62.09 Aligned_cols=48 Identities=25% Similarity=0.442 Sum_probs=34.9
Q ss_pred CCCccchHHHHH---HHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 151 IGKTVGLDSIIS---EVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 151 ~~~~~g~~~~~~---~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
...++|.+-.+. -|-..+..+.+...-.|||+|+||||||+.|.+...
T Consensus 23 lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~ 73 (436)
T COG2256 23 LDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTN 73 (436)
T ss_pred HHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhC
Confidence 345666554332 233445567888899999999999999999988653
No 188
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=97.70 E-value=3.6e-06 Score=69.33 Aligned_cols=41 Identities=27% Similarity=0.416 Sum_probs=32.4
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
++++...+.+++ +++|+|++|+|||||.+.|.+...+.+|.
T Consensus 20 l~~vs~~i~~Ge--~~~l~GpsGsGKSTLLr~iaGl~~p~~G~ 60 (353)
T TIGR03265 20 LKDISLSVKKGE--FVCLLGPSGCGKTTLLRIIAGLERQTAGT 60 (353)
T ss_pred EEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHCCCCCCceE
Confidence 334444455677 99999999999999999999988776553
No 189
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.69 E-value=1.3e-05 Score=62.83 Aligned_cols=35 Identities=26% Similarity=0.401 Sum_probs=29.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.+.++...+..++ +++|+|++|+|||||++.|.+.
T Consensus 22 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 22 ILKGLNLSINKGE--IHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred eeecceeEEcCCc--EEEEECCCCCCHHHHHHHHcCC
Confidence 4556666667788 9999999999999999999985
No 190
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.69 E-value=1.5e-05 Score=69.24 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=40.0
Q ss_pred CCCCccch-HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 150 PIGKTVGL-DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 150 ~~~~~~g~-~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+.+..|+. +..++++...+..++ .++|+|++|+|||||++.+.+..++.+|.
T Consensus 339 ~vsf~Y~~~~~vL~~isl~i~~G~--~vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 391 (529)
T TIGR02868 339 DLSFGYPGSPPVLDGVSLDLPPGE--RVAILGPSGSGKSTLLMLLTGLLDPLQGE 391 (529)
T ss_pred EEEEecCCCCceeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 33444442 235677777777788 99999999999999999999988877664
No 191
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.69 E-value=1.5e-05 Score=71.26 Aligned_cols=53 Identities=23% Similarity=0.193 Sum_probs=40.6
Q ss_pred cCCCCccc--hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 149 RPIGKTVG--LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 149 ~~~~~~~g--~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+.+..|+ ....++++...+..++ .++|+|++|+|||||++.+.+...|.+|.
T Consensus 455 ~nvsf~Y~~~~~~vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 509 (686)
T TIGR03797 455 DRVTFRYRPDGPLILDDVSLQIEPGE--FVAIVGPSGSGKSTLLRLLLGFETPESGS 509 (686)
T ss_pred EEEEEEcCCCCccceeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence 33444453 2346777777777788 99999999999999999999988876564
No 192
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.69 E-value=7.8e-06 Score=64.16 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=29.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.++++...+..++ +++|+|++|+|||||++.|.+-
T Consensus 20 ~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 20 ALNSVSLDFYPNE--ITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred eeeeeeEEEcCCc--EEEEECCCCCCHHHHHHHHhcc
Confidence 4555555566777 9999999999999999999875
No 193
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.69 E-value=7.3e-06 Score=70.79 Aligned_cols=46 Identities=28% Similarity=0.417 Sum_probs=36.1
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
+..||....++++...+..++ +++|+|++|+|||||++.|.+...+
T Consensus 12 ~~~~~~~~il~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (506)
T PRK13549 12 TKTFGGVKALDNVSLKVRAGE--IVSLCGENGAGKSTLMKVLSGVYPH 57 (506)
T ss_pred EEEeCCeEeecceeEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 334554445666777777788 9999999999999999999997664
No 194
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=97.69 E-value=4.6e-06 Score=69.23 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=36.8
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
...+|....++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 21 ~~~~~~~~~l~~vsl~i~~Ge--~~~LlGpsGsGKSTLLr~IaGl~~p~~G~ 70 (375)
T PRK09452 21 SKSFDGKEVISNLDLTINNGE--FLTLLGPSGCGKTTVLRLIAGFETPDSGR 70 (375)
T ss_pred EEEECCeEEEeeeEEEEeCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence 334443334445555566677 99999999999999999999988776553
No 195
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=97.69 E-value=3.9e-06 Score=70.14 Aligned_cols=47 Identities=30% Similarity=0.509 Sum_probs=35.6
Q ss_pred cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
||....++++...+..++ +++|+|+||+|||||++.+.+...+.+|.
T Consensus 13 y~~~~vL~~vs~~i~~Ge--iv~liGpNGaGKSTLLk~LaGll~p~sG~ 59 (402)
T PRK09536 13 FGDTTVLDGVDLSVREGS--LVGLVGPNGAGKTTLLRAINGTLTPTAGT 59 (402)
T ss_pred ECCEEEEEeeEEEECCCC--EEEEECCCCchHHHHHHHHhcCCCCCCcE
Confidence 333334455555566677 99999999999999999999987776553
No 196
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=97.68 E-value=1.3e-05 Score=69.32 Aligned_cols=42 Identities=21% Similarity=0.411 Sum_probs=34.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc-CCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR-DTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~-~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|++... +.+|.
T Consensus 277 vl~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~ 319 (506)
T PRK13549 277 RVDDVSFSLRRGE--ILGIAGLVGAGRTELVQCLFGAYPGRWEGE 319 (506)
T ss_pred cccceeeEEcCCc--EEEEeCCCCCCHHHHHHHHhCCCCCCCCcE
Confidence 5666666677788 999999999999999999999865 34454
No 197
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.68 E-value=8.1e-06 Score=64.07 Aligned_cols=39 Identities=28% Similarity=0.354 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
..++++...+..++ +++|+|++|+|||||++.|.+...+
T Consensus 18 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~~ 56 (252)
T PRK14272 18 QAVKNVNLDVQRGT--VNALIGPSGCGKTTFLRAINRMHDL 56 (252)
T ss_pred EeeccceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCC
Confidence 35566666667788 9999999999999999999997654
No 198
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=97.68 E-value=1.3e-05 Score=69.11 Aligned_cols=42 Identities=24% Similarity=0.474 Sum_probs=32.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|+||+|||||++.+.+...+.+|.
T Consensus 268 ~l~~isl~i~~Ge--~~~iiG~NGsGKSTLlk~l~G~~~p~~G~ 309 (501)
T PRK11288 268 LREPISFSVRAGE--IVGLFGLVGAGRSELMKLLYGATRRTAGQ 309 (501)
T ss_pred cccceeEEEeCCc--EEEEEcCCCCCHHHHHHHHcCCCcCCCce
Confidence 3455555555677 99999999999999999999887665443
No 199
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=97.68 E-value=1.4e-05 Score=61.52 Aligned_cols=41 Identities=27% Similarity=0.294 Sum_probs=32.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.++++...+.+++ +++|+|++|+|||||++.+.+...+.+|
T Consensus 20 il~~vs~~i~~G~--~~~I~G~nGsGKStLl~~l~G~~~~~~G 60 (220)
T TIGR02982 20 VLFDINLEINPGE--IVILTGPSGSGKTTLLTLIGGLRSVQEG 60 (220)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 4455555566677 9999999999999999999998766544
No 200
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=97.68 E-value=6.2e-06 Score=68.05 Aligned_cols=42 Identities=31% Similarity=0.358 Sum_probs=33.4
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+-..+.+|.
T Consensus 19 ~l~~vsl~i~~Ge--~~~llG~sGsGKSTLLr~iaGl~~p~~G~ 60 (356)
T PRK11650 19 VIKGIDLDVADGE--FIVLVGPSGCGKSTLLRMVAGLERITSGE 60 (356)
T ss_pred EEeeeeEEEcCCC--EEEEECCCCCcHHHHHHHHHCCCCCCceE
Confidence 3444555556677 99999999999999999999987776553
No 201
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=97.68 E-value=8.5e-05 Score=61.39 Aligned_cols=45 Identities=24% Similarity=0.382 Sum_probs=38.5
Q ss_pred CccchHHHHHHHHHhhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 153 KTVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++||+.+++.|...|.+ +....+-|+|++|+||||+++.+++..
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 588999999999998874 334579999999999999999999864
No 202
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.67 E-value=9e-06 Score=64.34 Aligned_cols=43 Identities=26% Similarity=0.400 Sum_probs=33.4
Q ss_pred CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++....++++...+..++ +++|+|++|+|||||++.+.+..
T Consensus 18 ~~~~~~~il~~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 60 (264)
T PRK14243 18 VYYGSFLAVKNVWLDIPKNQ--ITAFIGPSGCGKSTILRCFNRLN 60 (264)
T ss_pred EEECCEEEeecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhhh
Confidence 33443345566666677788 99999999999999999999754
No 203
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.67 E-value=7.4e-05 Score=60.97 Aligned_cols=46 Identities=22% Similarity=0.397 Sum_probs=39.5
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.+..++..+....+-++|+.|+||||+|+.+.+..
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999998888776678899999999999999987764
No 204
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=97.67 E-value=1.2e-05 Score=69.13 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=33.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDF 204 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~F 204 (206)
.++++...+..++ +++|+|++|+|||||++.+++...+.+|.+
T Consensus 263 ~l~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i 305 (491)
T PRK10982 263 SIRDVSFDLHKGE--ILGIAGLVGAKRTDIVETLFGIREKSAGTI 305 (491)
T ss_pred ccceeeEEEeCCc--EEEEecCCCCCHHHHHHHHcCCCcCCccEE
Confidence 4555555556677 999999999999999999999876655543
No 205
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=8e-06 Score=64.05 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=30.5
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++...+..++ +++|+|++|+|||||++.|.+-..
T Consensus 18 ~l~~i~~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 18 AVKNVTMKIFKNQ--ITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred eEeeeeEeecCCC--EEEEECCCCCCHHHHHHHHhcccc
Confidence 4555666666788 999999999999999999998654
No 206
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.67 E-value=8.1e-06 Score=64.08 Aligned_cols=36 Identities=25% Similarity=0.375 Sum_probs=29.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++++...+..++ +++|+|++|+|||||++.|.+-.
T Consensus 20 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 20 ALKGIDLDFNQNE--ITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred EEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 4455555566677 99999999999999999998753
No 207
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.67 E-value=3.1e-05 Score=56.29 Aligned_cols=34 Identities=26% Similarity=0.549 Sum_probs=28.0
Q ss_pred hhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+.+++ +++|+|++|+|||||++.|.+...+.+|+
T Consensus 22 i~~g~--~~~i~G~nGsGKStll~~l~g~~~~~~G~ 55 (157)
T cd00267 22 LKAGE--IVALVGPNGSGKSTLLRAIAGLLKPTSGE 55 (157)
T ss_pred EcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCccE
Confidence 44566 99999999999999999999987665453
No 208
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.66 E-value=7.8e-06 Score=62.95 Aligned_cols=52 Identities=23% Similarity=0.367 Sum_probs=44.1
Q ss_pred CCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 150 PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 150 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+++.+|....+++|...+..++ +.+++|+||.||||..++|.+...+.+|+
T Consensus 7 ~vtK~Fg~k~av~~isf~v~~G~--i~GllG~NGAGKTTtfRmILglle~~~G~ 58 (300)
T COG4152 7 GVTKSFGDKKAVDNISFEVPPGE--IFGLLGPNGAGKTTTFRMILGLLEPTEGE 58 (300)
T ss_pred cchhccCceeeecceeeeecCCe--EEEeecCCCCCccchHHHHhccCCccCce
Confidence 34567787778888888888888 99999999999999999999998886564
No 209
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=1.2e-05 Score=65.51 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=33.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|.+|+|||||++.|.+-..+.+|.
T Consensus 30 ~l~~vsl~i~~Ge--~~~IvG~sGsGKSTLl~~l~gl~~p~~G~ 71 (327)
T PRK11308 30 ALDGVSFTLERGK--TLAVVGESGCGKSTLARLLTMIETPTGGE 71 (327)
T ss_pred EEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHHcCCCCCCcE
Confidence 3455555666778 99999999999999999999987665554
No 210
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.66 E-value=1.4e-05 Score=63.86 Aligned_cols=42 Identities=21% Similarity=0.350 Sum_probs=34.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 25 vl~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~ 66 (280)
T PRK13633 25 ALDDVNLEVKKGE--FLVILGRNGSGKSTIAKHMNALLIPSEGK 66 (280)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 4555555566777 99999999999999999999987766553
No 211
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.66 E-value=1e-05 Score=63.39 Aligned_cols=37 Identities=32% Similarity=0.481 Sum_probs=30.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...
T Consensus 18 ~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14240 18 ALKKINLDIEENQ--VTALIGPSGCGKSTFLRTLNRMND 54 (250)
T ss_pred eeecceEEEcCCC--EEEEECCCCCCHHHHHHHHhcccc
Confidence 4555656666788 999999999999999999998543
No 212
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.66 E-value=9.4e-06 Score=63.70 Aligned_cols=37 Identities=27% Similarity=0.418 Sum_probs=30.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...
T Consensus 19 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~G~~~ 55 (251)
T PRK14270 19 ALNDINLPIYENK--ITALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred eeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHHhccC
Confidence 4455555566778 999999999999999999998654
No 213
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.66 E-value=1.4e-05 Score=69.10 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=32.6
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
++++...+..++ +++|+|+||+|||||++.|.+...+.+|.
T Consensus 279 l~~isl~i~~Ge--~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~ 319 (510)
T PRK15439 279 FRNISLEVRAGE--ILGLAGVVGAGRTELAETLYGLRPARGGR 319 (510)
T ss_pred ccceeEEEcCCc--EEEEECCCCCCHHHHHHHHcCCCCCCCcE
Confidence 445555555677 99999999999999999999987665554
No 214
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.66 E-value=7.7e-06 Score=65.47 Aligned_cols=44 Identities=25% Similarity=0.360 Sum_probs=33.8
Q ss_pred CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++....++++...+..++ +++|+|++|+|||||++.|.+...
T Consensus 47 ~~~~~~~il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~ 90 (285)
T PRK14254 47 VFYGDEQALDDVSMDIPENQ--VTAMIGPSGCGKSTFLRCINRMND 90 (285)
T ss_pred EEECCEeeEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccCC
Confidence 33443345566666666788 999999999999999999998754
No 215
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.65 E-value=8.7e-06 Score=63.96 Aligned_cols=37 Identities=30% Similarity=0.420 Sum_probs=29.9
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++++...+..++ +++|+|++|+|||||++.+.+..
T Consensus 20 ~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 20 HALYDITISIPKNR--VTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred eeeeeeEEEECCCc--EEEEECCCCCCHHHHHHHHhccc
Confidence 34555555566678 99999999999999999999753
No 216
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.65 E-value=7.8e-06 Score=64.20 Aligned_cols=37 Identities=24% Similarity=0.449 Sum_probs=30.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++...+..++ +++|+|++|+|||||++.+.+-..
T Consensus 19 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (252)
T PRK14256 19 AVKDVSMDFPENS--VTAIIGPSGCGKSTVLRSINRMHD 55 (252)
T ss_pred EEecceEEEcCCC--EEEEECCCCCCHHHHHHHHHhccc
Confidence 4555555566778 999999999999999999998753
No 217
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.65 E-value=8.2e-05 Score=59.51 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+...+|||.|++|+|||||++.+.+-.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll 86 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL 86 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445699999999999999999875543
No 218
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=97.64 E-value=1.4e-05 Score=68.91 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=32.3
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 268 l~~vsl~i~~Ge--~~~liG~NGsGKSTLl~~l~G~~~p~~G~ 308 (501)
T PRK10762 268 VNDVSFTLRKGE--ILGVSGLMGAGRTELMKVLYGALPRTSGY 308 (501)
T ss_pred cccceEEEcCCc--EEEEecCCCCCHHHHHHHHhCCCCCCceE
Confidence 444555555677 99999999999999999999987665454
No 219
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.64 E-value=2.4e-05 Score=61.24 Aligned_cols=42 Identities=26% Similarity=0.415 Sum_probs=35.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+++|+..+..+. +++.+|+||.||||+.|++-+...|.+|+
T Consensus 39 AVqdisf~IP~G~--ivgflGaNGAGKSTtLKmLTGll~p~~G~ 80 (325)
T COG4586 39 AVQDISFEIPKGE--IVGFLGANGAGKSTTLKMLTGLLLPTSGK 80 (325)
T ss_pred hhheeeeecCCCc--EEEEEcCCCCcchhhHHHHhCccccCCCe
Confidence 5566666677788 99999999999999999999988877664
No 220
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.63 E-value=4.4e-05 Score=62.96 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=34.4
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+.+++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 17 ~l~~isl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~ 58 (353)
T PRK10851 17 VLNDISLDIPSGQ--MVALLGPSGSGKTTLLRIIAGLEHQTSGH 58 (353)
T ss_pred EEEEeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 4455556666788 99999999999999999999987776554
No 221
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.63 E-value=5.6e-06 Score=68.42 Aligned_cols=46 Identities=26% Similarity=0.475 Sum_probs=34.7
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCC
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTE 201 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~ 201 (206)
.||....++++...+..++ +++|+|++|+|||||.+.|.+...+.+
T Consensus 14 ~~~~~~~l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~ 59 (362)
T TIGR03258 14 AYGANTVLDDLSLEIEAGE--LLALIGKSGCGKTTLLRAIAGFVKAAG 59 (362)
T ss_pred EECCeEEEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 3443234445555556677 999999999999999999999887765
No 222
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.63 E-value=1.1e-05 Score=63.25 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=30.4
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...
T Consensus 19 ~l~~~sl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 19 ALHGISLDFEEKE--LTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred eeeeeeEEEcCCC--EEEEECCCCCCHHHHHHHHhhccc
Confidence 4555555566677 999999999999999999998764
No 223
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.62 E-value=2.2e-05 Score=70.52 Aligned_cols=52 Identities=27% Similarity=0.380 Sum_probs=39.4
Q ss_pred CCCCccc-hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 150 PIGKTVG-LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 150 ~~~~~~g-~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+.+..|+ ....++++...+..++ .++|+|++|+|||||++.+.+...|.+|.
T Consensus 478 ~vsf~y~~~~~iL~~isl~i~~G~--~vaIvG~SGsGKSTLlklL~gl~~p~~G~ 530 (708)
T TIGR01193 478 DVSYSYGYGSNILSDISLTIKMNS--KTTIVGMSGSGKSTLAKLLVGFFQARSGE 530 (708)
T ss_pred EEEEEcCCCCcceeceeEEECCCC--EEEEECCCCCCHHHHHHHHhccCCCCCcE
Confidence 3344454 2345666666667788 99999999999999999999988876564
No 224
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.62 E-value=1.7e-05 Score=59.22 Aligned_cols=50 Identities=22% Similarity=0.410 Sum_probs=37.9
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.++.||....++++...+..++ +.+++||+|.|||||...+..-...++|
T Consensus 7 v~K~y~~~~vl~~isl~i~~g~--iTs~IGPNGAGKSTLLS~~sRL~~~d~G 56 (252)
T COG4604 7 VSKSYGTKVVLDDVSLDIPKGG--ITSIIGPNGAGKSTLLSMMSRLLKKDSG 56 (252)
T ss_pred hhHhhCCEEeeccceeeecCCc--eeEEECCCCccHHHHHHHHHHhccccCc
Confidence 3455666666777776677777 9999999999999999988766554433
No 225
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.62 E-value=1.6e-05 Score=69.67 Aligned_cols=56 Identities=21% Similarity=0.327 Sum_probs=44.7
Q ss_pred ccccCCCCccc-hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 146 VEERPIGKTVG-LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 146 ~~~~~~~~~~g-~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+...+.+..|+ ....++++...+..++ .++|||++|+|||||++.+....++.+|.
T Consensus 329 I~f~~vsf~y~~~~~vl~~is~~i~~Ge--~vaiVG~sGsGKSTl~~LL~r~~~~~~G~ 385 (567)
T COG1132 329 IEFENVSFSYPGKKPVLKDISFSIEPGE--KVAIVGPSGSGKSTLIKLLLRLYDPTSGE 385 (567)
T ss_pred EEEEEEEEEcCCCCccccCceEEEcCCC--EEEEECCCCCCHHHHHHHHhccCCCCCCe
Confidence 34444555566 4567888888888899 99999999999999999999988876554
No 226
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.62 E-value=9.8e-06 Score=63.42 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=29.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++++...+..++ +++|+|++|+|||||++.+.+..
T Consensus 17 ~l~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 17 ALFDINMQIEQNK--ITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 4455555566677 99999999999999999999875
No 227
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.62 E-value=2.3e-05 Score=68.33 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=35.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ .++|+|++|+|||||++.+.+...+.+|.
T Consensus 338 ~l~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~~~~~G~ 379 (547)
T PRK10522 338 SVGPINLTIKRGE--LLFLIGGNGSGKSTLAMLLTGLYQPQSGE 379 (547)
T ss_pred EEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 5666666677788 99999999999999999999988776553
No 228
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.62 E-value=1.1e-05 Score=69.70 Aligned_cols=39 Identities=26% Similarity=0.442 Sum_probs=32.3
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
..++++...+.+++ +++|+|++|+|||||++.|.+...+
T Consensus 15 ~il~~isl~i~~Ge--~~~liG~nGsGKSTLl~~i~G~~~~ 53 (500)
T TIGR02633 15 KALDGIDLEVRPGE--CVGLCGENGAGKSTLMKILSGVYPH 53 (500)
T ss_pred EeecceEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 35566666677788 9999999999999999999997654
No 229
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=8.6e-06 Score=64.48 Aligned_cols=45 Identities=22% Similarity=0.319 Sum_probs=34.4
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
+..++....++++...+..++ +++|+|++|+|||||++.|.+...
T Consensus 23 ~~~~~~~~vl~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~ 67 (265)
T PRK14252 23 NFYYGGYQALKNINMMVHEKQ--VTALIGPSGCGKSTFLRCFNRMHD 67 (265)
T ss_pred EEEECCeeeeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcccC
Confidence 334443345666666667788 999999999999999999998754
No 230
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=9.4e-06 Score=64.70 Aligned_cols=48 Identities=25% Similarity=0.306 Sum_probs=37.0
Q ss_pred CCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 150 PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 150 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
..+..|+....++++...+..++ +++|+|++|+|||||++.|.+...+
T Consensus 26 nl~~~~~~~~il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~p 73 (276)
T PRK14271 26 NLTLGFAGKTVLDQVSMGFPARA--VTSLMGPTGSGKTTFLRTLNRMNDK 73 (276)
T ss_pred eEEEEECCEEEeeeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhccCCc
Confidence 34444554445666766777788 9999999999999999999987654
No 231
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=1e-05 Score=63.93 Aligned_cols=38 Identities=34% Similarity=0.363 Sum_probs=32.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...+
T Consensus 22 il~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~ 59 (261)
T PRK14258 22 ILEGVSMEIYQSK--VTAIIGPSGCGKSTFLKCLNRMNEL 59 (261)
T ss_pred EeeceEEEEcCCc--EEEEECCCCCCHHHHHHHHhcccCC
Confidence 4556666667788 9999999999999999999998765
No 232
>PLN03025 replication factor C subunit; Provisional
Probab=97.61 E-value=9.8e-05 Score=60.08 Aligned_cols=46 Identities=28% Similarity=0.318 Sum_probs=38.1
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..+..|..++..++..-+-++|++|+||||+|+.+.+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4578888888888887777766667799999999999999987764
No 233
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.61 E-value=1.1e-05 Score=64.08 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=34.6
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.+..++....++++...+..++ +++|+|++|+|||||++.+.+...
T Consensus 31 l~~~~~~~~il~~vs~~i~~Ge--~~~I~G~nGsGKSTLl~~laGl~~ 76 (272)
T PRK14236 31 LNLFYGDKQALFDISMRIPKNR--VTAFIGPSGCGKSTLLRCFNRMND 76 (272)
T ss_pred EEEEECCeeEeeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHhcCC
Confidence 3444443335556666666788 999999999999999999998754
No 234
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.61 E-value=2.5e-05 Score=62.02 Aligned_cols=47 Identities=21% Similarity=0.311 Sum_probs=36.5
Q ss_pred cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+|.-...++|...+.+++ .+++.|++|+|||||.+.|.+-..+++|.
T Consensus 12 ~~~~~a~~di~l~i~~Ge--~vaLlGpSGaGKsTlLRiIAGLe~p~~G~ 58 (345)
T COG1118 12 FGAFGALDDISLDIKSGE--LVALLGPSGAGKSTLLRIIAGLETPDAGR 58 (345)
T ss_pred cccccccccceeeecCCc--EEEEECCCCCcHHHHHHHHhCcCCCCCce
Confidence 333333445666667788 99999999999999999999988877654
No 235
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=5.2e-05 Score=60.59 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=31.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
.++++...+..++ +++|+|++|+|||||++.|++...+.
T Consensus 22 ~l~~v~l~i~~Ge--~~~I~G~nGaGKSTLl~~l~G~~~p~ 60 (282)
T PRK13640 22 ALNDISFSIPRGS--WTALIGHNGSGKSTISKLINGLLLPD 60 (282)
T ss_pred ceeeEEEEEcCCC--EEEEECCCCCcHHHHHHHHhcccCCC
Confidence 4445555566677 99999999999999999999987664
No 236
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.61 E-value=5.2e-05 Score=62.68 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=26.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCc
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDFD 205 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~Fd 205 (206)
++ ...|+|++|+|||||++.||+.... ++||
T Consensus 169 GQ--R~lIvgppGvGKTTLaK~Ian~I~~--nhFD 199 (416)
T PRK09376 169 GQ--RGLIVAPPKAGKTVLLQNIANSITT--NHPE 199 (416)
T ss_pred Cc--eEEEeCCCCCChhHHHHHHHHHHHh--hcCC
Confidence 55 9999999999999999999998764 3665
No 237
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.61 E-value=5.3e-05 Score=60.41 Aligned_cols=42 Identities=21% Similarity=0.337 Sum_probs=34.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|.+|+|||||++.|.+...+.+|.
T Consensus 22 ~l~~v~l~i~~Ge--~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~ 63 (277)
T PRK13642 22 QLNGVSFSITKGE--WVSIIGQNGSGKSTTARLIDGLFEEFEGK 63 (277)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence 4455555566788 99999999999999999999988776554
No 238
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=97.60 E-value=4.4e-05 Score=63.90 Aligned_cols=39 Identities=26% Similarity=0.467 Sum_probs=31.2
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
++...+..++ +++|+|++|+|||||++.|.+-..+.+|.
T Consensus 46 ~isl~i~~Ge--i~~LvG~NGsGKSTLLr~I~Gl~~p~sG~ 84 (400)
T PRK10070 46 DASLAIEEGE--IFVIMGLSGSGKSTMVRLLNRLIEPTRGQ 84 (400)
T ss_pred eEEEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCCE
Confidence 3344445577 99999999999999999999988776564
No 239
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.60 E-value=2.2e-05 Score=60.45 Aligned_cols=53 Identities=19% Similarity=0.238 Sum_probs=40.3
Q ss_pred ccCCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 148 ERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 148 ~~~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
..+..-.++....+++|.=.+..++ --.|+|+||+|||||++.+.++..+.++
T Consensus 34 l~~v~v~r~gk~iL~~isW~V~~ge--~W~I~G~NGsGKTTLL~ll~~~~~pssg 86 (257)
T COG1119 34 LKNVSVRRNGKKILGDLSWQVNPGE--HWAIVGPNGAGKTTLLSLLTGEHPPSSG 86 (257)
T ss_pred ecceEEEECCEeeccccceeecCCC--cEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 3333445566667777777777788 8899999999999999999998876433
No 240
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.60 E-value=1.1e-05 Score=63.70 Aligned_cols=42 Identities=29% Similarity=0.383 Sum_probs=32.4
Q ss_pred cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
++....++++...+..++ +++|+|++|+|||||++.|.+...
T Consensus 22 ~~~~~il~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~i~Gl~~ 63 (258)
T PRK14268 22 YGEKQALKNVSMQIPKNS--VTALIGPSGCGKSTFIRCLNRMND 63 (258)
T ss_pred eCCeeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCC
Confidence 343334555655666778 999999999999999999998654
No 241
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=97.59 E-value=4.9e-05 Score=62.16 Aligned_cols=42 Identities=19% Similarity=0.364 Sum_probs=33.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|.+|+|||||++.|.+-..+.+|.
T Consensus 36 ~l~~vsl~i~~Ge--~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~ 77 (331)
T PRK15079 36 AVDGVTLRLYEGE--TLGVVGESGCGKSTFARAIIGLVKATDGE 77 (331)
T ss_pred EEeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHHCCCCCCCcE
Confidence 3445555566778 99999999999999999999987766553
No 242
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.59 E-value=0.00014 Score=60.76 Aligned_cols=47 Identities=23% Similarity=0.277 Sum_probs=38.7
Q ss_pred CCccchHHHHHHHHHhhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++||+.+++.|...+.+ +....+-|+|++|+||||+++.+++...
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~ 80 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELE 80 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999888754 2344678999999999999999998764
No 243
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.59 E-value=8.7e-06 Score=65.22 Aligned_cols=42 Identities=26% Similarity=0.304 Sum_probs=31.9
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++....++++...+..++ +++|+|++|+|||||++.|.+..
T Consensus 48 ~~~~~~il~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~L~Gl~ 89 (286)
T PRK14275 48 YYGEFEAVKKVNADILSKY--VTAIIGPSGCGKSTFLRAINRMN 89 (286)
T ss_pred EECCEEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhccc
Confidence 3433234555555666788 99999999999999999999853
No 244
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=97.58 E-value=6.1e-05 Score=59.36 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=33.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|.+|+|||||++.+.+...+.+|.
T Consensus 36 il~~isl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~ 77 (257)
T cd03288 36 VLKHVKAYIKPGQ--KVGICGRTGSGKSSLSLAFFRMVDIFDGK 77 (257)
T ss_pred ceeEEEEEEcCCC--EEEEECCCCCCHHHHHHHHHcccCCCCCe
Confidence 4445555555677 99999999999999999999987665553
No 245
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.58 E-value=2.5e-05 Score=67.40 Aligned_cols=39 Identities=21% Similarity=0.446 Sum_probs=33.1
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
..++++...+..++ +++|+|++|+|||||++.+.+...+
T Consensus 274 ~~l~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~G~~~p 312 (500)
T TIGR02633 274 KRVDDVSFSLRRGE--ILGVAGLVGAGRTELVQALFGAYPG 312 (500)
T ss_pred cccccceeEEeCCc--EEEEeCCCCCCHHHHHHHHhCCCCC
Confidence 35667776777788 9999999999999999999988763
No 246
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.58 E-value=5.4e-05 Score=56.62 Aligned_cols=42 Identities=26% Similarity=0.350 Sum_probs=35.0
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
..++++.-.+.+++ .+.+.|++|+|||||.+.+.+...|..|
T Consensus 19 ~~le~vsL~ia~ge--~vv~lGpSGcGKTTLLnl~AGf~~P~~G 60 (259)
T COG4525 19 SALEDVSLTIASGE--LVVVLGPSGCGKTTLLNLIAGFVTPSRG 60 (259)
T ss_pred hhhhccceeecCCC--EEEEEcCCCccHHHHHHHHhcCcCcccc
Confidence 36667777777888 8999999999999999999998776544
No 247
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.58 E-value=1.6e-05 Score=62.68 Aligned_cols=37 Identities=30% Similarity=0.385 Sum_probs=30.4
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...
T Consensus 22 il~~isl~i~~Ge--~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 22 AIEGISMDIYRNK--VTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred eecceEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcC
Confidence 4555555566678 999999999999999999998755
No 248
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.58 E-value=0.00012 Score=59.18 Aligned_cols=46 Identities=24% Similarity=0.354 Sum_probs=40.3
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.+..++..+....+-++|+.|+||||+++.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999899999999988777778999999999999999998865
No 249
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.57 E-value=3.9e-05 Score=67.26 Aligned_cols=43 Identities=28% Similarity=0.471 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..++++...+..++ .++|+|++|+|||||++.+.+...|.+|.
T Consensus 329 ~~l~~i~~~i~~G~--~~~ivG~sGsGKSTLl~ll~g~~~p~~G~ 371 (569)
T PRK10789 329 PALENVNFTLKPGQ--MLGICGPTGSGKSTLLSLIQRHFDVSEGD 371 (569)
T ss_pred ccccCeeEEECCCC--EEEEECCCCCCHHHHHHHHhcccCCCCCE
Confidence 35666666677788 99999999999999999999988876564
No 250
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=97.57 E-value=1.6e-05 Score=68.47 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=33.1
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.||....++++...+..++ +++|+|++|+|||||++.+.+...
T Consensus 269 ~~~~~~il~~vsl~i~~Ge--~~~i~G~NGsGKSTLl~~l~G~~~ 311 (490)
T PRK10938 269 SYNDRPILHNLSWQVNPGE--HWQIVGPNGAGKSTLLSLITGDHP 311 (490)
T ss_pred EECCeeEEeeceEEEcCCC--EEEEECCCCCCHHHHHHHHcCCCC
Confidence 3443334566666666788 999999999999999999998654
No 251
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.56 E-value=1.1e-05 Score=63.81 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=34.3
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
.+|....++++...+..++ +++|+|.+|+|||||++.+.+...+
T Consensus 17 ~~~~~~~l~~vs~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (261)
T PRK14263 17 FYGNFMAVRDSHVPIRKNE--ITGFIGPSGCGKSTVLRSLNRMNDL 60 (261)
T ss_pred EeCCEEEEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHccccc
Confidence 4454445566666667788 9999999999999999999887643
No 252
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=1.3e-05 Score=64.81 Aligned_cols=43 Identities=33% Similarity=0.382 Sum_probs=32.9
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++....++++...+..++ +++|+|++|+|||||++.|.+...
T Consensus 54 ~~~~~~iL~~is~~i~~Ge--~~~IvG~nGsGKSTLl~~L~Gl~~ 96 (305)
T PRK14264 54 YYGDDHALKGVSMDIPEKS--VTALIGPSGCGKSTFLRCLNRMND 96 (305)
T ss_pred EeCCeeeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccc
Confidence 3443334555555666788 999999999999999999998754
No 253
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.55 E-value=1.6e-05 Score=62.41 Aligned_cols=39 Identities=23% Similarity=0.394 Sum_probs=31.4
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.
T Consensus 19 il~~~s~~i~~G~--~~~i~G~nGsGKSTLl~~l~Gl~~~~ 57 (251)
T PRK14249 19 VLKNINMDFPERQ--ITAIIGPSGCGKSTLLRALNRMNDIV 57 (251)
T ss_pred EecceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCcc
Confidence 4455555566677 99999999999999999999876653
No 254
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.55 E-value=2e-05 Score=68.32 Aligned_cols=42 Identities=26% Similarity=0.440 Sum_probs=33.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+-..+.+|.
T Consensus 299 il~~is~~i~~Ge--~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~ 340 (520)
T TIGR03269 299 AVDNVSLEVKEGE--IFGIVGTSGAGKTTLSKIIAGVLEPTSGE 340 (520)
T ss_pred EEeeEEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 4555666666678 99999999999999999999987665454
No 255
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.55 E-value=2.2e-05 Score=69.49 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=33.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+-..+.+|.
T Consensus 339 ~l~~vs~~i~~Ge--~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~ 380 (623)
T PRK10261 339 AVEKVSFDLWPGE--TLSLVGESGSGKSTTGRALLRLVESQGGE 380 (623)
T ss_pred EEeeeEeEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCcE
Confidence 3455655666677 99999999999999999999887665554
No 256
>PRK13409 putative ATPase RIL; Provisional
Probab=97.55 E-value=4.9e-05 Score=66.77 Aligned_cols=38 Identities=34% Similarity=0.454 Sum_probs=30.6
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 358 ~s~~i~~Ge--iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~ 395 (590)
T PRK13409 358 EGGEIYEGE--VIGIVGPNGIGKTTFAKLLAGVLKPDEGE 395 (590)
T ss_pred cceEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 333445567 99999999999999999999988776554
No 257
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.55 E-value=0.00022 Score=50.35 Aligned_cols=35 Identities=29% Similarity=0.276 Sum_probs=27.8
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..|...|..+. +|.+.|.-|+|||||++.+.....
T Consensus 13 ~~l~~~l~~~~--~i~l~G~lGaGKTtl~~~l~~~lg 47 (133)
T TIGR00150 13 KAFAKPLDFGT--VVLLKGDLGAGKTTLVQGLLQGLG 47 (133)
T ss_pred HHHHHhCCCCC--EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34444555566 999999999999999999988754
No 258
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.54 E-value=7.5e-05 Score=65.14 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..++++...+..++ .++|+|++|+|||||++.+.+...+.+|.
T Consensus 332 ~~l~~~~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~ 374 (544)
T TIGR01842 332 PTLRGISFRLQAGE--ALAIIGPSGSGKSTLARLIVGIWPPTSGS 374 (544)
T ss_pred cccccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 45667777777788 99999999999999999999988776553
No 259
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.54 E-value=6.7e-05 Score=56.49 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=28.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++++...+..++ +++|+|++|+|||||++.+.+..
T Consensus 22 ~l~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 22 LLNNISGYVKPGT--LTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred eEEccEEEEeCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 3444544555677 99999999999999999999853
No 260
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=97.53 E-value=6.8e-05 Score=62.63 Aligned_cols=29 Identities=41% Similarity=0.677 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
||+|+|+||+||||+++++.+-.+|++|.
T Consensus 369 vigilGpNgiGKTTFvk~LAG~ikPdeg~ 397 (591)
T COG1245 369 VIGILGPNGIGKTTFVKLLAGVIKPDEGS 397 (591)
T ss_pred EEEEECCCCcchHHHHHHHhccccCCCCC
Confidence 99999999999999999999988877553
No 261
>PRK04195 replication factor C large subunit; Provisional
Probab=97.53 E-value=8.7e-05 Score=63.78 Aligned_cols=47 Identities=34% Similarity=0.545 Sum_probs=39.2
Q ss_pred CCCccchHHHHHHHHHhhhc---CC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSIISEVWRCIED---HN-EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~---~~-~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...++|.+..++.+..|+.. +. .+.+-|+|++|+||||+|+.+.+..
T Consensus 13 l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 13 LSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 34588999999999888864 22 5689999999999999999998875
No 262
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.53 E-value=3.6e-05 Score=65.87 Aligned_cols=41 Identities=24% Similarity=0.387 Sum_probs=35.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.++++...+..++ +++|||.+|+|||||++.|.+-..|.+|
T Consensus 306 Av~~VSf~l~~GE--~lglVGeSGsGKSTlar~i~gL~~P~~G 346 (539)
T COG1123 306 AVDDVSFDLREGE--TLGLVGESGSGKSTLARILAGLLPPSSG 346 (539)
T ss_pred eeeeeeeEecCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4667777777888 9999999999999999999998877644
No 263
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=97.53 E-value=2.6e-05 Score=69.05 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=34.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 31 ~l~~is~~v~~Ge--~~~lvG~nGsGKSTLl~~l~Gll~p~~G~ 72 (623)
T PRK10261 31 AVRNLSFSLQRGE--TLAIVGESGSGKSVTALALMRLLEQAGGL 72 (623)
T ss_pred EEEeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCCeE
Confidence 5666667777788 99999999999999999999987665453
No 264
>PLN03073 ABC transporter F family; Provisional
Probab=97.52 E-value=1e-05 Score=72.44 Aligned_cols=45 Identities=27% Similarity=0.347 Sum_probs=35.3
Q ss_pred CCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 150 PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 150 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
..+..||....++++...+..++ +++|+|+||+|||||+++|.+.
T Consensus 182 nls~~y~~~~ll~~isl~i~~Ge--~~gLvG~NGsGKSTLLr~l~g~ 226 (718)
T PLN03073 182 NFSISVGGRDLIVDASVTLAFGR--HYGLVGRNGTGKTTFLRYMAMH 226 (718)
T ss_pred eEEEEeCCCEEEECCEEEECCCC--EEEEECCCCCCHHHHHHHHcCC
Confidence 34445664446667777777788 9999999999999999999864
No 265
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.52 E-value=2.5e-05 Score=63.77 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=31.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++...+..++ +++|+|.+|+|||||++.|.+-..
T Consensus 22 ~l~~vsl~i~~Ge--~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 22 AVDRISYSVKQGE--VVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred EEeeeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCC
Confidence 4556666677788 999999999999999999999765
No 266
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.00017 Score=61.61 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=38.6
Q ss_pred CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+.....|...+..+.+ +.+-++|++|+||||+|+.+.+..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588988888888888887775 468899999999999999997764
No 267
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=5.7e-05 Score=66.16 Aligned_cols=56 Identities=20% Similarity=0.237 Sum_probs=45.4
Q ss_pred ccccCCCCccc-hH--HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 146 VEERPIGKTVG-LD--SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 146 ~~~~~~~~~~g-~~--~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+.+.+++..|. |. ..++++...+..++ ++++|||+|.||||+|.++-+...|.+|.
T Consensus 466 IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe--~vALVGPSGsGKSTiasLL~rfY~PtsG~ 524 (716)
T KOG0058|consen 466 IEFEDVSFAYPTRPDVPVLKNLSFTIRPGE--VVALVGPSGSGKSTIASLLLRFYDPTSGR 524 (716)
T ss_pred EEEEEeeeecCCCCCchhhcCceeeeCCCC--EEEEECCCCCCHHHHHHHHHHhcCCCCCe
Confidence 34455555554 33 37888999999999 99999999999999999999999887664
No 268
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.51 E-value=2.3e-05 Score=61.53 Aligned_cols=37 Identities=27% Similarity=0.370 Sum_probs=29.9
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...
T Consensus 20 ~l~~is~~i~~Ge--~~~I~G~nGsGKSTLl~~i~G~~~ 56 (251)
T PRK14244 20 ILFDINLDIYKRE--VTAFIGPSGCGKSTFLRCFNRMND 56 (251)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhcc
Confidence 4445555566678 999999999999999999998753
No 269
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.51 E-value=0.00015 Score=62.72 Aligned_cols=45 Identities=20% Similarity=0.413 Sum_probs=38.5
Q ss_pred CccchHHHHHHHHHhhhc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 153 KTVGLDSIISEVWRCIED------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++|.+..+++|+..|.. ..-+++-++||+|+|||||++.|..-.
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence 489999999999998842 445699999999999999999997654
No 270
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.50 E-value=0.00022 Score=56.32 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=27.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.+..+...+. .....+.|+|++|+|||||++.+++...
T Consensus 31 ~~~~l~~~~~-~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 31 AMAYLEYGLS-QREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred HHHHHHHHHh-cCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3444433333 2334899999999999999999998764
No 271
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.50 E-value=4.6e-05 Score=55.72 Aligned_cols=41 Identities=27% Similarity=0.404 Sum_probs=33.6
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
++++...+..++ .+.+.|++|+|||||.+.+|.++.+++|+
T Consensus 27 ~~~vslsV~aGE--CvvL~G~SG~GKStllr~LYaNY~~d~G~ 67 (235)
T COG4778 27 LRNVSLSVNAGE--CVVLHGPSGSGKSTLLRSLYANYLPDEGQ 67 (235)
T ss_pred eeceeEEecCcc--EEEeeCCCCCcHHHHHHHHHhccCCCCce
Confidence 344445555677 89999999999999999999999988765
No 272
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.50 E-value=0.00011 Score=45.82 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+|.|.|+.|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 273
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.49 E-value=0.0002 Score=65.43 Aligned_cols=47 Identities=26% Similarity=0.343 Sum_probs=40.7
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...++|++.++.+++..|......-+-++|++|+|||||++.+....
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999998887665567799999999999999988765
No 274
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.49 E-value=3.2e-05 Score=67.21 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=32.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
.++++...+..++ +++|+|++|+|||||++.|.+...+
T Consensus 24 ~l~~isl~i~~Ge--~~~iiG~nGsGKSTLl~~i~G~~~~ 61 (529)
T PRK15134 24 VVNDVSLQIEAGE--TLALVGESGSGKSVTALSILRLLPS 61 (529)
T ss_pred eeeceEEEEeCCC--EEEEECCCCCcHHHHHHHHhcCCCC
Confidence 5666777777788 9999999999999999999998764
No 275
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.49 E-value=4.6e-05 Score=60.63 Aligned_cols=42 Identities=31% Similarity=0.443 Sum_probs=34.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +.+|+|.+|.|||||+++|..-.+|.+|.
T Consensus 21 al~~vsL~I~~Ge--I~GIIG~SGAGKSTLiR~iN~Le~PtsG~ 62 (339)
T COG1135 21 ALDDVSLEIPKGE--IFGIIGYSGAGKSTLLRLINLLERPTSGS 62 (339)
T ss_pred eeccceEEEcCCc--EEEEEcCCCCcHHHHHHHHhccCCCCCce
Confidence 4455566666788 99999999999999999999888887664
No 276
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.48 E-value=6.9e-05 Score=55.34 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=37.8
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.+.||....++-++..-..++ ||+|+|.+|+||||+.+.|.--..|..|
T Consensus 13 HK~~G~~eVLKGvSL~A~~Gd--VisIIGsSGSGKSTfLRCiN~LE~P~~G 61 (256)
T COG4598 13 HKRYGEHEVLKGVSLQANAGD--VISIIGSSGSGKSTFLRCINFLEKPSAG 61 (256)
T ss_pred HhhcccchhhcceeeecCCCC--EEEEecCCCCchhHHHHHHHhhcCCCCc
Confidence 456777666666665556678 9999999999999999999866655544
No 277
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.48 E-value=4.7e-05 Score=68.46 Aligned_cols=43 Identities=23% Similarity=0.371 Sum_probs=36.8
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..++++...+..++ +++|+|++|+|||||++.+.+..++.+|.
T Consensus 495 ~vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~p~~G~ 537 (711)
T TIGR00958 495 PVLKGLTFTLHPGE--VVALVGPSGSGKSTVAALLQNLYQPTGGQ 537 (711)
T ss_pred ccccCceEEEcCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCE
Confidence 35677777777888 99999999999999999999998887664
No 278
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.48 E-value=3.5e-05 Score=63.00 Aligned_cols=37 Identities=22% Similarity=0.374 Sum_probs=30.9
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++...+..++ +++|+|.+|+|||||++.|.+-..
T Consensus 22 ~l~~vsl~i~~Ge--~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 22 AVDRVSMTLTEGE--IRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred EEeeeEEEECCCC--EEEEECCCCCCHHHHHHHHHccCC
Confidence 4556666666788 999999999999999999998764
No 279
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.47 E-value=8.6e-05 Score=61.76 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=29.7
Q ss_pred HhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 166 RCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 166 ~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 45 f~i~~Ge--i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~ 80 (382)
T TIGR03415 45 LDIEEGE--ICVLMGLSGSGKSSLLRAVNGLNPVSRGS 80 (382)
T ss_pred EEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence 3344566 99999999999999999999988776554
No 280
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.47 E-value=4.4e-05 Score=60.82 Aligned_cols=41 Identities=29% Similarity=0.452 Sum_probs=33.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||++.|++-... +|.
T Consensus 19 ~l~~isl~I~~Ge--~~~IvG~nGsGKSTLl~~L~gl~~~-~G~ 59 (275)
T cd03289 19 VLENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLLNT-EGD 59 (275)
T ss_pred ceeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhhhcCC-CcE
Confidence 4566666677788 9999999999999999999987653 353
No 281
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00021 Score=62.68 Aligned_cols=47 Identities=23% Similarity=0.373 Sum_probs=38.8
Q ss_pred CCCccchHHHHHHHHHhhhc----CC--CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSIISEVWRCIED----HN--EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~----~~--~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
....||.+...++|++.|-= ++ =.++.+|||+|+|||+|++.|..-.
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al 374 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL 374 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh
Confidence 35689999999999988752 22 2499999999999999999998765
No 282
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.47 E-value=0.0002 Score=65.47 Aligned_cols=47 Identities=23% Similarity=0.363 Sum_probs=39.8
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...++|++.+++.++..|.....+-+-++|++|+|||++++.+....
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999987554466799999999999999887764
No 283
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.46 E-value=0.00014 Score=59.21 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=27.6
Q ss_pred HhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 166 RCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 166 ~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..+..+.+..+-+||++|+||||||+.|.+..+
T Consensus 155 s~ieq~~ipSmIlWGppG~GKTtlArlia~tsk 187 (554)
T KOG2028|consen 155 SLIEQNRIPSMILWGPPGTGKTTLARLIASTSK 187 (554)
T ss_pred HHHHcCCCCceEEecCCCCchHHHHHHHHhhcC
Confidence 334457788999999999999999999988654
No 284
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.44 E-value=0.00022 Score=57.82 Aligned_cols=47 Identities=19% Similarity=0.123 Sum_probs=39.4
Q ss_pred CCCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...++|.+...+.+..++..+.. +.+-++|++|+||||+++.+++..
T Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~ 67 (316)
T PHA02544 20 IDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV 67 (316)
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 35588999999999999888764 466679999999999999998764
No 285
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.44 E-value=5.6e-05 Score=67.99 Aligned_cols=51 Identities=18% Similarity=0.225 Sum_probs=39.9
Q ss_pred CCCccch--HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 151 IGKTVGL--DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 151 ~~~~~g~--~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+..|+. ...++++...+..++ .|+|+|++|+|||||++.+.+...|.+|.
T Consensus 483 vsf~y~~~~~~vL~~isl~i~~Ge--~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 535 (710)
T TIGR03796 483 ITFGYSPLEPPLIENFSLTLQPGQ--RVALVGGSGSGKSTIAKLVAGLYQPWSGE 535 (710)
T ss_pred EEEecCCCCCCcccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 3444542 346777777777788 99999999999999999999988876553
No 286
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=97.43 E-value=0.00011 Score=61.06 Aligned_cols=50 Identities=26% Similarity=0.325 Sum_probs=36.0
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
...+|....++++...+..++ +++|+|++|+|||||++.|.+-..+.+|.
T Consensus 26 ~~~~~~~~~l~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~IaGl~~p~~G~ 75 (377)
T PRK11607 26 TKSFDGQHAVDDVSLTIYKGE--IFALLGASGCGKSTLLRMLAGFEQPTAGQ 75 (377)
T ss_pred EEEECCEEEEeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence 334443223444555555677 99999999999999999999988776553
No 287
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.43 E-value=0.00028 Score=63.72 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=40.3
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...++|++.++.+++..|......-+-++|++|+|||++++.+....
T Consensus 181 l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 181 IDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999998887655567799999999999999988765
No 288
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.00032 Score=58.15 Aligned_cols=46 Identities=24% Similarity=0.323 Sum_probs=39.4
Q ss_pred CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.+...+..+.+ +.+-++|+.|+||||+|+.+....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred hhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHh
Confidence 5589999999999998887664 467899999999999999988765
No 289
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.43 E-value=5.9e-05 Score=65.53 Aligned_cols=43 Identities=28% Similarity=0.298 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..++++...+..++ .++|+|++|+|||||++.+.+..++.+|.
T Consensus 336 ~il~~i~l~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~ 378 (529)
T TIGR02857 336 PALRPVSFTVPPGE--RVALVGPSGAGKSTLLNLLLGFVDPTEGS 378 (529)
T ss_pred ccccceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 35677777777788 99999999999999999999988876553
No 290
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.42 E-value=0.00034 Score=53.82 Aligned_cols=41 Identities=17% Similarity=0.336 Sum_probs=32.8
Q ss_pred hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 157 LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 157 ~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
....++.+..++.......+-|+|+.|+||||||+.+++..
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45567777777655555689999999999999999998765
No 291
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.42 E-value=6e-05 Score=66.14 Aligned_cols=43 Identities=23% Similarity=0.400 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..++++...+..++ .++|+|++|+|||||++.+.+...+.+|.
T Consensus 354 ~il~~i~~~i~~G~--~~aivG~sGsGKSTL~~ll~g~~~p~~G~ 396 (574)
T PRK11160 354 PVLKGLSLQIKAGE--KVALLGRTGCGKSTLLQLLTRAWDPQQGE 396 (574)
T ss_pred cceecceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 35677777777788 99999999999999999999988876664
No 292
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.42 E-value=5.2e-05 Score=58.88 Aligned_cols=42 Identities=36% Similarity=0.421 Sum_probs=33.0
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
..++++...+..++ .++|+|++|+|||||++++.+-..+.+|
T Consensus 18 ~~l~~v~~~i~~Ge--~~~i~G~nGsGKSTL~~~l~GLl~p~~G 59 (235)
T COG1122 18 AALKDVSLEIEKGE--RVLLIGPNGSGKSTLLKLLNGLLKPTSG 59 (235)
T ss_pred eeeeeeEEEECCCC--EEEEECCCCCCHHHHHHHHcCcCcCCCC
Confidence 34445555566677 9999999999999999999988777644
No 293
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.41 E-value=0.00011 Score=63.24 Aligned_cols=41 Identities=17% Similarity=0.364 Sum_probs=33.0
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
++++...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 40 L~nVSfsI~~GE--ivgIiGpNGSGKSTLLkiLaGLl~P~sGe 80 (549)
T PRK13545 40 LNNISFEVPEGE--IVGIIGLNGSGKSTLSNLIAGVTMPNKGT 80 (549)
T ss_pred EeeeEEEEeCCC--EEEEEcCCCCCHHHHHHHHhCCCCCCceE
Confidence 445555556677 99999999999999999999987776553
No 294
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.40 E-value=3.1e-05 Score=63.29 Aligned_cols=38 Identities=16% Similarity=0.277 Sum_probs=31.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
.++++...+..++ +++|+|.+|+|||||++.|.+-..+
T Consensus 31 ~l~~vsl~i~~Ge--~~~ivG~sGsGKSTL~~~l~Gl~~p 68 (330)
T PRK09473 31 AVNDLNFSLRAGE--TLGIVGESGSGKSQTAFALMGLLAA 68 (330)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCC
Confidence 4556666666788 9999999999999999999987755
No 295
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.40 E-value=0.00015 Score=56.88 Aligned_cols=36 Identities=33% Similarity=0.474 Sum_probs=29.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++++...+..++ +++|+|++|+|||||++.|++..
T Consensus 18 ~l~~~s~~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~ 53 (250)
T PRK14266 18 ILKNVNLDIPKNS--VTALIGPSGCGKSTFIRTLNRMN 53 (250)
T ss_pred EEeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHhhh
Confidence 4555555666788 99999999999999999999864
No 296
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=97.39 E-value=6.2e-05 Score=63.98 Aligned_cols=57 Identities=28% Similarity=0.359 Sum_probs=47.5
Q ss_pred CccccCCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 145 PVEERPIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 145 ~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.......++.||.-..++.+...+..++ |.+++|-||.|||||+|.+.+-..+++|.
T Consensus 8 ll~~~~i~K~FggV~AL~~v~l~v~~GE--V~aL~GeNGAGKSTLmKiLsGv~~p~~G~ 64 (500)
T COG1129 8 LLELRGISKSFGGVKALDGVSLTVRPGE--VHALLGENGAGKSTLMKILSGVYPPDSGE 64 (500)
T ss_pred eeeeecceEEcCCceeeccceeEEeCce--EEEEecCCCCCHHHHHHHHhCcccCCCce
Confidence 3445556777887778888888888899 99999999999999999999988877654
No 297
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.39 E-value=8.9e-05 Score=66.54 Aligned_cols=43 Identities=28% Similarity=0.414 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..++++...+..++ .++|+|++|+|||||++.+.+...+.+|.
T Consensus 471 ~il~~i~l~i~~G~--~vaivG~sGsGKSTL~~ll~g~~~p~~G~ 513 (694)
T TIGR01846 471 EVLSNLNLDIKPGE--FIGIVGPSGSGKSTLTKLLQRLYTPQHGQ 513 (694)
T ss_pred cccccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 35677777777788 99999999999999999999988876553
No 298
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.38 E-value=6.4e-05 Score=67.44 Aligned_cols=43 Identities=30% Similarity=0.371 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..++++...+..++ .|+|+|++|+|||||++.+.+...+.+|.
T Consensus 479 ~vL~~i~l~i~~G~--~iaIvG~sGsGKSTLlklL~gl~~p~~G~ 521 (694)
T TIGR03375 479 PALDNVSLTIRPGE--KVAIIGRIGSGKSTLLKLLLGLYQPTEGS 521 (694)
T ss_pred cceeeeeEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 35667777777788 99999999999999999999988876664
No 299
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.38 E-value=7.4e-05 Score=65.57 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=35.5
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ .++|+|++|+|||||++.+.+...+.+|+
T Consensus 355 iL~~inl~i~~Ge--~i~IvG~sGsGKSTLlklL~gl~~p~~G~ 396 (576)
T TIGR02204 355 ALDGLNLTVRPGE--TVALVGPSGAGKSTLFQLLLRFYDPQSGR 396 (576)
T ss_pred cccceeEEecCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCE
Confidence 5666666677788 99999999999999999999998876553
No 300
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.38 E-value=0.00017 Score=48.88 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 037945 175 VIGLYGMGGVGKTTLLKKLN 194 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~ 194 (206)
.++|+|++|+|||||++.+.
T Consensus 17 ~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEcCCCCCHHHHHHHhh
Confidence 89999999999999999975
No 301
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.37 E-value=6.9e-05 Score=65.94 Aligned_cols=43 Identities=21% Similarity=0.287 Sum_probs=36.1
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..++++...+..++ .++|+|.+|+|||||++.+.+...+.+|.
T Consensus 349 ~iL~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~~p~~G~ 391 (588)
T PRK13657 349 QGVEDVSFEAKPGQ--TVAIVGPTGAGKSTLINLLQRVFDPQSGR 391 (588)
T ss_pred ceecceeEEECCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 35667767777788 99999999999999999999988876554
No 302
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.37 E-value=0.00026 Score=63.50 Aligned_cols=46 Identities=37% Similarity=0.494 Sum_probs=35.8
Q ss_pred CCccchHHHHH---HHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIIS---EVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~---~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..+. .+...+..+.+.-+-++|++|+||||||+.+++..
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~ 76 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT 76 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45778776663 45555666777778899999999999999998865
No 303
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.37 E-value=7e-05 Score=65.08 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=31.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++...+..++ +++|+|++|+|||||++.+.+-..
T Consensus 301 il~~isl~i~~Ge--~~~i~G~nGsGKSTLlk~l~Gl~~ 337 (529)
T PRK15134 301 VVKNISFTLRPGE--TLGLVGESGSGKSTTGLALLRLIN 337 (529)
T ss_pred eeecceeEEcCCC--EEEEECCCCCCHHHHHHHHhCcCC
Confidence 5667777777788 999999999999999999998653
No 304
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.36 E-value=0.00034 Score=64.09 Aligned_cols=47 Identities=23% Similarity=0.406 Sum_probs=40.2
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...++|++.++.+++..|......-+-++|++|+|||||++.+....
T Consensus 177 l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 45699999999999998887655567799999999999999987764
No 305
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.36 E-value=0.00033 Score=51.09 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=28.5
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++.|...|.+ . ++.++|..|+|||||++.+....
T Consensus 25 g~~~l~~~l~~-k--~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG-K--TSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT-S--EEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC-C--EEEEECCCCCCHHHHHHHHHhhc
Confidence 45566666655 4 99999999999999999998864
No 306
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.34 E-value=8.3e-05 Score=65.42 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=38.4
Q ss_pred CCCccch-HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 151 IGKTVGL-DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 151 ~~~~~g~-~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+..|+. ...++++...+..++ .++|+|++|+|||||++.+.+...+.+|+
T Consensus 340 v~~~y~~~~~~l~~i~~~i~~G~--~~~ivG~sGsGKSTL~~ll~g~~~~~~G~ 391 (585)
T TIGR01192 340 ITFEFANSSQGVFDVSFEAKAGQ--TVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391 (585)
T ss_pred EEEECCCCCccccceeEEEcCCC--EEEEECCCCCCHHHHHHHHccCCCCCCCE
Confidence 3334432 235666666667788 99999999999999999999988776553
No 307
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.33 E-value=7.7e-05 Score=65.70 Aligned_cols=42 Identities=24% Similarity=0.376 Sum_probs=35.5
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ .++|+|.+|+|||||++.+.+...|.+|.
T Consensus 356 il~~i~l~i~~Ge--~iaIvG~SGsGKSTLl~lL~gl~~p~~G~ 397 (592)
T PRK10790 356 VLQNINLSVPSRG--FVALVGHTGSGKSTLASLLMGYYPLTEGE 397 (592)
T ss_pred eeeceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence 5666666677788 99999999999999999999988876553
No 308
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.33 E-value=0.00055 Score=54.62 Aligned_cols=33 Identities=27% Similarity=0.369 Sum_probs=27.5
Q ss_pred HhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 166 RCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 166 ~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++.+.+..+|.|+|.+|+|||||+..+.+...
T Consensus 97 ~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~ 129 (290)
T PRK10463 97 ARFAARKQLVLNLVSSPGSGKTTLLTETLMRLK 129 (290)
T ss_pred HHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344456788999999999999999999988754
No 309
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00011 Score=56.16 Aligned_cols=37 Identities=24% Similarity=0.333 Sum_probs=30.2
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++.+...+..++ +-+|.||||+|||||+..|.+++
T Consensus 18 eILkgvnL~v~~GE--vhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 18 EILKGVNLTVKEGE--VHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred hhhcCcceeEcCCc--EEEEECCCCCCHHHHHHHHhCCC
Confidence 44555555566788 89999999999999999999876
No 310
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.32 E-value=0.00047 Score=54.46 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..-+-++|++|+||||+|+.+++..
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHH
Confidence 4467899999999999999997653
No 311
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.32 E-value=5.9e-05 Score=66.34 Aligned_cols=42 Identities=24% Similarity=0.290 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..++++...+..++ .++|+|++|+|||||++.+.+.. |.+|.
T Consensus 364 ~vL~~i~l~i~~G~--~vaIvG~SGsGKSTL~~lL~g~~-p~~G~ 405 (588)
T PRK11174 364 TLAGPLNFTLPAGQ--RIALVGPSGAGKTSLLNALLGFL-PYQGS 405 (588)
T ss_pred eeeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCC-CCCcE
Confidence 34566666666788 99999999999999999999988 65554
No 312
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.31 E-value=0.0001 Score=64.54 Aligned_cols=42 Identities=21% Similarity=0.365 Sum_probs=35.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ .++|+|.+|+|||||++.+.+...+.+|.
T Consensus 347 il~~inl~i~~G~--~v~IvG~sGsGKSTLl~lL~gl~~~~~G~ 388 (571)
T TIGR02203 347 ALDSISLVIEPGE--TVALVGRSGSGKSTLVNLIPRFYEPDSGQ 388 (571)
T ss_pred cccCeeEEecCCC--EEEEECCCCCCHHHHHHHHHhccCCCCCe
Confidence 4566666667788 99999999999999999999988776554
No 313
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.30 E-value=0.00046 Score=58.74 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=38.7
Q ss_pred CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++|++..++.+...+..++ -+-+.|++|+||||||+.+....
T Consensus 21 ~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~ 63 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 63 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHh
Confidence 47899999999999998888 89999999999999999998754
No 314
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.00016 Score=61.17 Aligned_cols=57 Identities=18% Similarity=0.268 Sum_probs=42.9
Q ss_pred CccccCCCCccc-hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 145 PVEERPIGKTVG-LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 145 ~~~~~~~~~~~g-~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+...+.+..|. ....+.++...+..++ .|++||++|.||||+.+.++...++.+|.
T Consensus 537 ~i~fsnvtF~Y~p~k~vl~disF~v~pGk--tvAlVG~SGaGKSTimRlLfRffdv~sGs 594 (790)
T KOG0056|consen 537 KIEFSNVTFAYDPGKPVLSDISFTVQPGK--TVALVGPSGAGKSTIMRLLFRFFDVNSGS 594 (790)
T ss_pred eEEEEEeEEecCCCCceeecceEEecCCc--EEEEECCCCCchhHHHHHHHHHhhccCce
Confidence 344444444443 3346677777777788 99999999999999999999988887664
No 315
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0029 Score=55.89 Aligned_cols=47 Identities=21% Similarity=0.384 Sum_probs=39.2
Q ss_pred CCCccchHHHHHHHHHhhhc----C--CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSIISEVWRCIED----H--NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~----~--~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
....||+++..++|++.|-= + +=+++..+||+|+|||++++.|..-.
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL 462 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL 462 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh
Confidence 45689999999999998752 1 23499999999999999999998765
No 316
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=97.30 E-value=9.4e-05 Score=64.68 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=35.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ .++|+|++|+|||||++.+.+...|.+|.
T Consensus 357 ~l~~vs~~i~~G~--~~aivG~sGsGKSTl~~ll~g~~~p~~G~ 398 (555)
T TIGR01194 357 ALGPIDLRIAQGD--IVFIVGENGCGKSTLAKLFCGLYIPQEGE 398 (555)
T ss_pred eeccceEEEcCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 5666666667788 99999999999999999999988776554
No 317
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=97.28 E-value=0.00021 Score=54.76 Aligned_cols=20 Identities=30% Similarity=0.576 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 037945 175 VIGLYGMGGVGKTTLLKKLN 194 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~ 194 (206)
+++|+|++|+|||||++.|.
T Consensus 30 ~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 30 LFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred EEEEECCCCCCHHHHHHHhe
Confidence 99999999999999999976
No 318
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.27 E-value=0.00012 Score=62.32 Aligned_cols=52 Identities=23% Similarity=0.331 Sum_probs=42.2
Q ss_pred CccccCCCCccchHH-HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 145 PVEERPIGKTVGLDS-IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 145 ~~~~~~~~~~~g~~~-~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.+.+.++...||.+. .+..+...+..++ .++|+|.+|+||||+++.++...+
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGe--kVaIvG~nGsGKSTilr~LlrF~d 403 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGE--KVAIVGSNGSGKSTILRLLLRFFD 403 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCC--EEEEECCCCCCHHHHHHHHHHHhc
Confidence 345555566777665 7777888888888 999999999999999999988765
No 319
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.27 E-value=0.00021 Score=54.28 Aligned_cols=42 Identities=21% Similarity=0.400 Sum_probs=33.3
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+..+.-.+.+++ .|.|+|.||+|||||++.|.++..+++|+
T Consensus 21 ~l~~~sL~I~~g~--FvtViGsNGAGKSTlln~iaG~l~~t~G~ 62 (263)
T COG1101 21 ALNGLSLEIAEGD--FVTVIGSNGAGKSTLLNAIAGDLKPTSGQ 62 (263)
T ss_pred HHhcCceeecCCc--eEEEEcCCCccHHHHHHHhhCccccCCce
Confidence 3344444445577 99999999999999999999999887664
No 320
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=97.26 E-value=0.00011 Score=65.55 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=34.7
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..++++...+..++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 466 ~il~~isl~i~~Ge--~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~ 508 (659)
T TIGR00954 466 VLIESLSFEVPSGN--HLLICGPNGCGKSSLFRILGELWPVYGGR 508 (659)
T ss_pred eeeecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence 35666666666788 99999999999999999999987665453
No 321
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.26 E-value=0.0025 Score=57.93 Aligned_cols=46 Identities=22% Similarity=0.346 Sum_probs=38.0
Q ss_pred CCccchHHHHHHHHHhhhc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...||.+..++.|+.+|.- ..-.++.++|++|+||||+++.|.+..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l 373 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT 373 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999877762 223489999999999999999998764
No 322
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.25 E-value=0.00038 Score=42.26 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~ 195 (206)
+..|.|++|+|||||.-.+.-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999987643
No 323
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.25 E-value=0.00049 Score=58.56 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=39.5
Q ss_pred CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..+..|...+..+.+. .+-++|+.|+||||+|+.+....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45889998999999999888753 68899999999999999997754
No 324
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.24 E-value=0.00057 Score=62.73 Aligned_cols=47 Identities=23% Similarity=0.396 Sum_probs=39.8
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...++|++.++.+++..|......-+-++|++|+|||++++.+....
T Consensus 172 ~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 172 LDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred CCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999877655567799999999999999987764
No 325
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.23 E-value=9e-05 Score=62.27 Aligned_cols=51 Identities=24% Similarity=0.285 Sum_probs=39.4
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++.||.-...+++...+..++ +=++.|-||.|||||++.+|+-.+|++|.
T Consensus 10 itK~f~~~~And~V~l~v~~Ge--IHaLLGENGAGKSTLm~iL~G~~~P~~Ge 60 (501)
T COG3845 10 ITKRFPGVVANDDVSLSVKKGE--IHALLGENGAGKSTLMKILFGLYQPDSGE 60 (501)
T ss_pred cEEEcCCEEecCceeeeecCCc--EEEEeccCCCCHHHHHHHHhCcccCCcce
Confidence 3445553334555666667788 89999999999999999999999988664
No 326
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.23 E-value=0.00062 Score=57.11 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=38.7
Q ss_pred CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+...+.|...+..+.+. -+-++|+.|+||||+|+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred hhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 45889998888898888887654 58899999999999999887654
No 327
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0001 Score=63.12 Aligned_cols=44 Identities=27% Similarity=0.383 Sum_probs=36.5
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDF 204 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~F 204 (206)
....++...+..++ .++|||.+|+|||||++.+.+...+.+|.+
T Consensus 335 ~~l~~l~~t~~~g~--~talvG~SGaGKSTLl~lL~G~~~~~~G~I 378 (559)
T COG4988 335 PALSDLNLTIKAGQ--LTALVGASGAGKSTLLNLLLGFLAPTQGEI 378 (559)
T ss_pred cccCCceeEecCCc--EEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence 45666666677777 999999999999999999999988766654
No 328
>PLN02796 D-glycerate 3-kinase
Probab=97.23 E-value=0.00032 Score=57.21 Aligned_cols=28 Identities=39% Similarity=0.445 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
..-+|+|.|+.|+|||||++.+.+....
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 3568999999999999999999987653
No 329
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.19 E-value=0.00076 Score=55.91 Aligned_cols=46 Identities=33% Similarity=0.421 Sum_probs=36.0
Q ss_pred CccchHHHHHHHHHhhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 153 KTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++|.+..++.|...+.- ...+-+.++|++|+||||||+.+++...
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 478888888888776631 1234588999999999999999998653
No 330
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.18 E-value=0.00047 Score=56.04 Aligned_cols=28 Identities=43% Similarity=0.635 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
...+|+++|++|+||||++..+......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3569999999999999999999877654
No 331
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.00068 Score=58.88 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=38.8
Q ss_pred CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..+..|...+..+.+ +.+-++|+.|+||||+|+.+....
T Consensus 16 ~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999988664 457899999999999999998754
No 332
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.17 E-value=0.00097 Score=51.89 Aligned_cols=45 Identities=20% Similarity=0.328 Sum_probs=31.3
Q ss_pred Cccch-HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 153 KTVGL-DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 153 ~~~g~-~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++|. ...+..+..+........+-|+|+.|+|||+|++.+++..
T Consensus 24 f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 24 FYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred cccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34452 3345445454444444588999999999999999988754
No 333
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.16 E-value=0.00051 Score=52.81 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=39.5
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
..+||.++.++.+.-...+++..-+-|.||+|+||||=+..+.+.
T Consensus 27 ~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~ 71 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARE 71 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHH
Confidence 458999999999999999999889999999999999977766554
No 334
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.15 E-value=0.00034 Score=59.74 Aligned_cols=25 Identities=44% Similarity=0.521 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.+|+++|++|+||||++.++.....
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHH
Confidence 4999999999999999999987653
No 335
>PLN03211 ABC transporter G-25; Provisional
Probab=97.15 E-value=8.4e-05 Score=66.16 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=32.8
Q ss_pred cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
++....++++...+..++ +++|+|++|+|||||++.+.+...+
T Consensus 78 ~~~~~iL~~vs~~i~~Ge--~~aI~GpnGaGKSTLL~iLaG~~~~ 120 (659)
T PLN03211 78 IQERTILNGVTGMASPGE--ILAVLGPSGSGKSTLLNALAGRIQG 120 (659)
T ss_pred CCCCeeeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 443345555555556677 9999999999999999999987654
No 336
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.14 E-value=0.00025 Score=60.02 Aligned_cols=31 Identities=29% Similarity=0.430 Sum_probs=23.3
Q ss_pred hhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+..++ +++|+|++|+|||||++ .+...+.+|
T Consensus 29 i~~GE--iv~L~G~SGsGKSTLLr--~~l~~~~sG 59 (504)
T TIGR03238 29 LPSSS--LLFLCGSSGDGKSEILA--ENKRKFSEG 59 (504)
T ss_pred ecCCC--EEEEECCCCCCHHHHHh--cCCCCCCCC
Confidence 44567 99999999999999999 344444433
No 337
>PRK08727 hypothetical protein; Validated
Probab=97.14 E-value=0.0014 Score=50.89 Aligned_cols=45 Identities=20% Similarity=0.219 Sum_probs=31.4
Q ss_pred CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++|..+....+..........-+.|+|+.|+|||+|++.+++..
T Consensus 21 f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~ 65 (233)
T PRK08727 21 YIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAA 65 (233)
T ss_pred ccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345555555544443333333479999999999999999998764
No 338
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.13 E-value=0.00039 Score=56.87 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=31.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++...+..++ +++|+|++|+|||||++.+++...
T Consensus 97 ~L~~is~~I~~Ge--~v~IvG~~GsGKSTLl~~L~g~~~ 133 (329)
T PRK14257 97 VLHDLNLDIKRNK--VTAFIGPSGCGKSTFLRNLNQLND 133 (329)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcccc
Confidence 4556666666788 999999999999999999998764
No 339
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.13 E-value=0.00073 Score=58.30 Aligned_cols=47 Identities=19% Similarity=0.249 Sum_probs=39.5
Q ss_pred CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|.+.....|...+..+.+ +.+-++|+.|+||||+|+.+.....
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4588999889989998888764 4669999999999999999887653
No 340
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.12 E-value=0.0005 Score=57.16 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=26.8
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCc
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDFD 205 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~Fd 205 (206)
.++ .++|+|++|+|||||++.|++.... ++|+
T Consensus 167 ~Gq--~~~IvG~~g~GKTtL~~~i~~~I~~--nhfd 198 (415)
T TIGR00767 167 KGQ--RGLIVAPPKAGKTVLLQKIAQAITR--NHPE 198 (415)
T ss_pred CCC--EEEEECCCCCChhHHHHHHHHhhcc--cCCc
Confidence 356 9999999999999999999998753 3564
No 341
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.11 E-value=0.00023 Score=68.58 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=40.7
Q ss_pred CCCCccch---HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 150 PIGKTVGL---DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 150 ~~~~~~g~---~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+++..|+. ...++++...+..++ +++|+|++|+|||||++++.+...+.+|.
T Consensus 387 nVsf~Y~~~~~~~vL~~isl~i~~Ge--~vaIvG~SGsGKSTLl~lL~gl~~p~~G~ 441 (1466)
T PTZ00265 387 NVRFHYDTRKDVEIYKDLNFTLTEGK--TYAFVGESGCGKSTILKLIERLYDPTEGD 441 (1466)
T ss_pred EEEEEcCCCCCCceeccceEEEcCCC--EEEEECCCCCCHHHHHHHHHHhccCCCCe
Confidence 34445542 136777777777888 99999999999999999999988877664
No 342
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.11 E-value=0.0016 Score=45.41 Aligned_cols=45 Identities=18% Similarity=0.306 Sum_probs=34.8
Q ss_pred CccchHHHHHHHHHhhhc-------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 153 KTVGLDSIISEVWRCIED-------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~-------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++|.+-..+.++..|.+ ...-|++..|.+|+|||.++++|.+..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 367776666666666553 356799999999999999999988774
No 343
>PRK01889 GTPase RsgA; Reviewed
Probab=97.11 E-value=0.00078 Score=55.69 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=33.4
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
-++.|..+|..+. +++++|.+|+|||||++.+.+...+..|
T Consensus 184 gl~~L~~~L~~g~--~~~lvG~sgvGKStLin~L~g~~~~~~G 224 (356)
T PRK01889 184 GLDVLAAWLSGGK--TVALLGSSGVGKSTLVNALLGEEVQKTG 224 (356)
T ss_pred cHHHHHHHhhcCC--EEEEECCCCccHHHHHHHHHHhccccee
Confidence 3667777777777 9999999999999999999987655434
No 344
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.09 E-value=0.00073 Score=53.61 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=31.0
Q ss_pred HHHHHhhh-cCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 162 SEVWRCIE-DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 162 ~~l~~~L~-~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+.++..+. .++..-++|+|++|+|||||++.+.+...+.+|.
T Consensus 99 ~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~ 141 (270)
T TIGR02858 99 DKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTGISQ 141 (270)
T ss_pred HHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCCCce
Confidence 33333443 3556689999999999999999999887665443
No 345
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=97.09 E-value=0.00076 Score=55.36 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=39.8
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
+.++|.+..+.-|...+.+..+.-|-|.|..|+||||+++.+++...
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~ 63 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLP 63 (350)
T ss_pred HHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHh
Confidence 56899998888888888787766677999999999999999987653
No 346
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.09 E-value=0.00084 Score=60.95 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=39.4
Q ss_pred CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..+..|.+.+..+.+. .+-++|+.|+||||+|+.+....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 45899999999999988887655 46899999999999999998765
No 347
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.05 E-value=0.0011 Score=57.94 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=38.7
Q ss_pred CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..+..+...+..+.+ +-+-++|+.|+||||+|+.+....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999998877654 468899999999999999987654
No 348
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.05 E-value=0.0011 Score=55.50 Aligned_cols=45 Identities=36% Similarity=0.430 Sum_probs=35.3
Q ss_pred CccchHHHHHHHHHhhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 153 KTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.+.|.+..++++...+.- ...+-|-++|++|+|||+||+.+++..
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh
Confidence 467888888887776531 224568899999999999999998865
No 349
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.04 E-value=0.001 Score=57.01 Aligned_cols=45 Identities=27% Similarity=0.285 Sum_probs=38.1
Q ss_pred CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
..++|.+..+..+.+.+..+.+. -+-++|+.|+||||+|+.+...
T Consensus 13 ~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHH
Confidence 45899998888888888877654 7889999999999999988653
No 350
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.00058 Score=57.39 Aligned_cols=23 Identities=48% Similarity=0.574 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.+|+++|++|+||||++..+.+.
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 39999999999999999988764
No 351
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.04 E-value=0.0006 Score=51.67 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 037945 174 KVIGLYGMGGVGKTTLLKKLN 194 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~ 194 (206)
+++.|.|+||+|||||.+.|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 489999999999999999987
No 352
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.03 E-value=0.00059 Score=59.34 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
++..+|+|.|++|+|||||++.|.+..
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 457799999999999999999998764
No 353
>PRK10536 hypothetical protein; Provisional
Probab=97.03 E-value=0.0018 Score=50.80 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=35.0
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
..+.++......++.+|.+.+ .+.+.|++|+|||+|+..+.-+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~--lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQ--LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCC--eEEEECCCCCCHHHHHHHHHHH
Confidence 445667777777888887766 9999999999999999987664
No 354
>PRK09087 hypothetical protein; Validated
Probab=97.02 E-value=0.0018 Score=50.08 Aligned_cols=25 Identities=36% Similarity=0.332 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.+.+.|||+.|+|||||++.++...
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~ 68 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS 68 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc
Confidence 3469999999999999999988653
No 355
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.02 E-value=0.0014 Score=54.37 Aligned_cols=46 Identities=30% Similarity=0.425 Sum_probs=39.5
Q ss_pred CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+...+.+...+..+.+. .+-++|+.|+||||+++.+.+..
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l 63 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKI 63 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999887654 78899999999999999987765
No 356
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.02 E-value=0.00075 Score=56.11 Aligned_cols=26 Identities=46% Similarity=0.626 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++|+++|++|+||||++..+.....
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~ 266 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH 266 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH
Confidence 46999999999999999999976543
No 357
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.01 E-value=0.00059 Score=51.78 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~ 195 (206)
.+++|.|+||+|||||++.|..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 4999999999999999999984
No 358
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.01 E-value=0.0016 Score=50.23 Aligned_cols=39 Identities=18% Similarity=0.380 Sum_probs=27.7
Q ss_pred HHHHHHHHhhhc-CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 159 SIISEVWRCIED-HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 159 ~~~~~l~~~L~~-~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..+..+..+... .....+-|+|+.|+|||+||+.+++..
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344444444332 233478899999999999999998865
No 359
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.01 E-value=0.00071 Score=56.01 Aligned_cols=24 Identities=46% Similarity=0.570 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++.++|++|+||||++.++....
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 399999999999999999987653
No 360
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.01 E-value=0.0011 Score=57.22 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=39.4
Q ss_pred CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..+..|.+.+..+.+. .+-++|+.|+||||+|+.+....
T Consensus 16 ~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999999887654 57899999999999999887654
No 361
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.99 E-value=0.00073 Score=54.04 Aligned_cols=25 Identities=56% Similarity=0.739 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..+|+++|++|+||||++..+....
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3499999999999999999887654
No 362
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.99 E-value=0.0013 Score=57.86 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=38.3
Q ss_pred CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
..++|.+..+..|.+.+..+.+ +.+-++|+.|+||||+|+.+...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~ 61 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKS 61 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4588988899999999988765 46789999999999999998544
No 363
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.99 E-value=0.0012 Score=58.12 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=39.3
Q ss_pred CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+.....|..++..+.+ +.+-++|+.|+||||+|+.+.+..
T Consensus 15 ddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999988764 477899999999999999887654
No 364
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.98 E-value=0.0024 Score=55.65 Aligned_cols=45 Identities=22% Similarity=0.334 Sum_probs=36.3
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
..++|.+..++.+...+......-+-|+|++|+||||+|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 348898888888877776654456789999999999999999763
No 365
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.98 E-value=0.0012 Score=59.52 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=38.7
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...++|++.++.+++..|....-.-+-++|++|+|||+||+.+....
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999998887433455689999999999999988653
No 366
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.98 E-value=0.0014 Score=56.58 Aligned_cols=46 Identities=22% Similarity=0.241 Sum_probs=38.8
Q ss_pred CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..+..+...+..+.+ +-+-++|+.|+||||+|+.++...
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999889888887777654 478899999999999999998765
No 367
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.97 E-value=0.0011 Score=53.11 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=26.8
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
+.|...|.. ++++++|++|+|||||++.+.+....
T Consensus 153 ~~L~~~L~~---k~~~~~G~sg~GKSTlin~l~~~~~~ 187 (287)
T cd01854 153 DELREYLKG---KTSVLVGQSGVGKSTLINALLPDLDL 187 (287)
T ss_pred HHHHhhhcc---ceEEEECCCCCCHHHHHHHHhchhhc
Confidence 444445543 48999999999999999999876543
No 368
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.97 E-value=0.0012 Score=58.36 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=38.5
Q ss_pred cCCCCccchHHHHHHHHHhhhcC-----CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 149 RPIGKTVGLDSIISEVWRCIEDH-----NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 149 ~~~~~~~g~~~~~~~l~~~L~~~-----~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.....++|.+..++++..++... .-.++.++|++|+||||+++.+.+..
T Consensus 81 ~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 33456788888888888888752 22479999999999999999998764
No 369
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=96.95 E-value=0.0018 Score=53.24 Aligned_cols=46 Identities=17% Similarity=0.333 Sum_probs=39.0
Q ss_pred CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.+...+..+.+ +.+-++|+.|+||||+|+.+....
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999999988764 367899999999999999887664
No 370
>PRK00098 GTPase RsgA; Reviewed
Probab=96.95 E-value=0.0012 Score=53.23 Aligned_cols=35 Identities=34% Similarity=0.415 Sum_probs=26.5
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
+.|...+. +. +++++|++|+|||||++.+.+....
T Consensus 156 ~~L~~~l~-gk--~~~~~G~sgvGKStlin~l~~~~~~ 190 (298)
T PRK00098 156 DELKPLLA-GK--VTVLAGQSGVGKSTLLNALAPDLEL 190 (298)
T ss_pred HHHHhhcc-Cc--eEEEECCCCCCHHHHHHHHhCCcCC
Confidence 34444443 44 8999999999999999999876543
No 371
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.94 E-value=0.0014 Score=45.65 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=27.0
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+.+...|..++ +|.+.|.=|+|||||+|.+....
T Consensus 6 ~~l~~~l~~g~--vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 6 KKLAQILKPGD--VILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp HHHHHHHSS-E--EEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhCCCCC--EEEEECCCCCCHHHHHHHHHHHc
Confidence 34555666666 99999999999999999987765
No 372
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.94 E-value=0.00082 Score=56.34 Aligned_cols=28 Identities=32% Similarity=0.489 Sum_probs=24.7
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..-.+.|+|+|..|+|||||++.+....
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4567799999999999999999998764
No 373
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.92 E-value=0.00092 Score=49.12 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=27.5
Q ss_pred hhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+..++ .++|||++|+|||||.-.+.+-..+.+|
T Consensus 33 v~~Ge--~vaiVG~SGSGKSTLl~vlAGLd~~ssG 65 (228)
T COG4181 33 VKRGE--TVAIVGPSGSGKSTLLAVLAGLDDPSSG 65 (228)
T ss_pred ecCCc--eEEEEcCCCCcHHhHHHHHhcCCCCCCc
Confidence 34567 8999999999999999999887766554
No 374
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.91 E-value=0.00093 Score=50.54 Aligned_cols=26 Identities=27% Similarity=0.381 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
....|+|+|.+|+|||||++.+.+..
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~ 65 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGAD 65 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcch
Confidence 34589999999999999999998764
No 375
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.91 E-value=0.00096 Score=55.77 Aligned_cols=27 Identities=44% Similarity=0.563 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..-+|+|.|..|+|||||++.|.+-..
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~ 237 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFR 237 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999999999999976553
No 376
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=96.91 E-value=0.00071 Score=66.86 Aligned_cols=42 Identities=29% Similarity=0.419 Sum_probs=33.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ +++|+|++|+|||||+++|.+...+.+|.
T Consensus 1954 aL~~ISf~I~~GE--i~gLLG~NGAGKTTLlkmL~Gll~ptsG~ 1995 (2272)
T TIGR01257 1954 AVDRLCVGVRPGE--CFGLLGVNGAGKTTTFKMLTGDTTVTSGD 1995 (2272)
T ss_pred EEEeeEEEEcCCc--EEEEECCCCCcHHHHHHHHhCCCCCCccE
Confidence 3444444455566 99999999999999999999998776554
No 377
>PRK06893 DNA replication initiation factor; Validated
Probab=96.90 E-value=0.00097 Score=51.66 Aligned_cols=25 Identities=28% Similarity=0.541 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...+-++|++|+|||+|++.+++..
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3478999999999999999999874
No 378
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.90 E-value=0.0014 Score=57.65 Aligned_cols=46 Identities=26% Similarity=0.397 Sum_probs=39.5
Q ss_pred CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..+..|.+.+..+.+. .+-++|+.|+||||+++.+.+..
T Consensus 16 ddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999999887654 67899999999999999987654
No 379
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.90 E-value=0.00038 Score=55.77 Aligned_cols=37 Identities=22% Similarity=0.376 Sum_probs=31.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++...+..++ +++|||-+|+||||+++.|.+-..
T Consensus 20 av~~vs~~i~~GE--~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 20 AVDGVSFELKKGE--ILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred EEeceeEEEcCCc--EEEEEcCCCCCHHHHHHHHHhccC
Confidence 4556666677788 999999999999999999998654
No 380
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.88 E-value=0.0018 Score=57.17 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=38.6
Q ss_pred CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..+..|...+..+.+ +-+-++|+.|+||||+|+.+....
T Consensus 16 ~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999899989998888765 458899999999999999887654
No 381
>CHL00181 cbbX CbbX; Provisional
Probab=96.88 E-value=0.0024 Score=51.24 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.+-++|++|+||||+|+.+++..
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999997653
No 382
>PLN03232 ABC transporter C family member; Provisional
Probab=96.87 E-value=0.00038 Score=67.38 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..++++...+..++ .|+|||..|+|||||++.+.+-.++.+|.
T Consensus 1250 ~vL~~isl~I~~Ge--kvaIVG~SGSGKSTL~~lL~rl~~p~~G~ 1292 (1495)
T PLN03232 1250 PVLHGLSFFVSPSE--KVGVVGRTGAGKSSMLNALFRIVELEKGR 1292 (1495)
T ss_pred cccccceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCcCCCce
Confidence 46777777778888 99999999999999999999988776554
No 383
>PRK09183 transposase/IS protein; Provisional
Probab=96.87 E-value=0.0011 Score=52.45 Aligned_cols=28 Identities=43% Similarity=0.485 Sum_probs=22.5
Q ss_pred hhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+..+. .+.|+|++|+|||+|+..+.+..
T Consensus 99 i~~~~--~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 99 IERNE--NIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred hhcCC--eEEEEeCCCCCHHHHHHHHHHHH
Confidence 33444 78899999999999999997653
No 384
>PLN02165 adenylate isopentenyltransferase
Probab=96.86 E-value=0.0012 Score=53.73 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=23.9
Q ss_pred hcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 169 EDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 169 ~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
....-.+|.|+|++|+|||||+..+....
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l 67 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRF 67 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHc
Confidence 33334499999999999999999998774
No 385
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.86 E-value=0.0019 Score=54.08 Aligned_cols=47 Identities=30% Similarity=0.374 Sum_probs=35.1
Q ss_pred CCccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..+.|.+..++.|...+. . ...+-+.++|++|+|||+||+.+.+...
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 346788777777666543 1 1345788999999999999999998653
No 386
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=96.86 E-value=0.0025 Score=47.74 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=33.1
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
-.|.+..++.|...+..+. .+.++|.+|+|||||.+.+.+..
T Consensus 110 ~~gi~eL~~~l~~~l~~~~--~~~~~G~~nvGKStliN~l~~~~ 151 (190)
T cd01855 110 GWGVEELINAIKKLAKKGG--DVYVVGATNVGKSTLINALLKKD 151 (190)
T ss_pred CCCHHHHHHHHHHHhhcCC--cEEEEcCCCCCHHHHHHHHHHhc
Confidence 3466777777777665444 79999999999999999998753
No 387
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.86 E-value=0.0018 Score=56.22 Aligned_cols=46 Identities=26% Similarity=0.420 Sum_probs=39.0
Q ss_pred CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..+..+.+++..+.+. .+-++|+.|+||||+|+.+....
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45889999999999999887654 56899999999999999987654
No 388
>PLN02348 phosphoribulokinase
Probab=96.85 E-value=0.0013 Score=54.49 Aligned_cols=27 Identities=37% Similarity=0.667 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+..-+|+|.|.+|+|||||++.|.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~L 73 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVF 73 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 456799999999999999999998765
No 389
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=96.85 E-value=0.001 Score=56.80 Aligned_cols=37 Identities=24% Similarity=0.435 Sum_probs=30.8
Q ss_pred hhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCcC
Q 037945 168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDFDL 206 (206)
Q Consensus 168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~Fd~ 206 (206)
|..++ ..++||+||+||||+.+.|++...|-..+||+
T Consensus 98 l~~g~--rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~ 134 (614)
T KOG0927|consen 98 LNRGR--RYGLIGPNGSGKSTFLRAIAGREVPIPEHIDF 134 (614)
T ss_pred ecCCc--eEEEEcCCCCcHhHHHHHHhcCCCCCCcccch
Confidence 44566 89999999999999999999988776566664
No 390
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.84 E-value=0.0027 Score=51.83 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=27.3
Q ss_pred HHHHhhh--cCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 163 EVWRCIE--DHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 163 ~l~~~L~--~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++..+. .+...+|+|.|++|+|||||+..+.....
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4444443 35677999999999999999998766553
No 391
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.83 E-value=0.0021 Score=56.42 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=39.4
Q ss_pred CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.|.+.+..+.+. .+-++|+.|+||||+|+.+....
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45899999999999999887654 57899999999999999987654
No 392
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.83 E-value=0.0018 Score=57.52 Aligned_cols=45 Identities=24% Similarity=0.412 Sum_probs=38.9
Q ss_pred CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
..++|.+..+..|.+++..+.+. -+-++|+.|+||||+|+.+...
T Consensus 16 ddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~ 61 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKS 61 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999887654 6899999999999999988765
No 393
>PRK06620 hypothetical protein; Validated
Probab=96.82 E-value=0.0011 Score=50.78 Aligned_cols=24 Identities=29% Similarity=0.181 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..+-|+|+.|+|||+|++.+.+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 468999999999999999987754
No 394
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=96.82 E-value=0.0026 Score=46.17 Aligned_cols=44 Identities=25% Similarity=0.441 Sum_probs=29.5
Q ss_pred cchHHHHHHHHHhhh---cCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 155 VGLDSIISEVWRCIE---DHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 155 ~g~~~~~~~l~~~L~---~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.|.+..++.+...+. ...-..|+++|++|+|||||.+.+.+...
T Consensus 81 ~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 81 FGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred ccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCc
Confidence 344444554444332 12234688999999999999999988643
No 395
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.82 E-value=0.0024 Score=52.16 Aligned_cols=46 Identities=20% Similarity=0.371 Sum_probs=38.9
Q ss_pred CCccchHHHHHHHHHhhhc------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++++++.+.. ..-+++-++||.|.|||||+..+-.-.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999875 234699999999999999999986644
No 396
>PRK05439 pantothenate kinase; Provisional
Probab=96.81 E-value=0.0014 Score=52.99 Aligned_cols=26 Identities=31% Similarity=0.372 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
+...+|+|-|.+|+||||+++.+..-
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~ 109 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQAL 109 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999988764
No 397
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.81 E-value=0.0022 Score=56.81 Aligned_cols=46 Identities=22% Similarity=0.361 Sum_probs=38.9
Q ss_pred CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..+..|...+..+.+. .+-++|+.|+||||+|+.+....
T Consensus 16 ~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 55899999999999999887753 46899999999999999886654
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=96.80 E-value=0.0013 Score=55.27 Aligned_cols=32 Identities=34% Similarity=0.669 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCc
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKFRDTEHDFD 205 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~Fd 205 (206)
+|++|+|+||+||||-++.+.+...|.=|.|+
T Consensus 101 ~V~GilG~NGiGKsTalkILaGel~PNLG~~~ 132 (591)
T COG1245 101 KVVGILGPNGIGKSTALKILAGELKPNLGRYE 132 (591)
T ss_pred cEEEEEcCCCccHHHHHHHHhCccccCCCCCC
Confidence 39999999999999999999998877545543
No 399
>PLN02200 adenylate kinase family protein
Probab=96.79 E-value=0.0015 Score=50.81 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...+|.|.|++|+||||+++.+....
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999987654
No 400
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.79 E-value=0.0028 Score=53.14 Aligned_cols=47 Identities=26% Similarity=0.332 Sum_probs=35.3
Q ss_pred CCccchHHHHHHHHHhhhcC--------------CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIEDH--------------NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~--------------~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|.+..+..+...+..+ ..+-|-++|++|+|||||++.+.....
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~ 72 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLAN 72 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45778877777766555431 135788999999999999999987653
No 401
>PRK14974 cell division protein FtsY; Provisional
Probab=96.78 E-value=0.0016 Score=53.29 Aligned_cols=27 Identities=37% Similarity=0.529 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
...+|.++|++|+||||++..+.....
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~ 165 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK 165 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 467999999999999998888776543
No 402
>PLN03130 ABC transporter C family member; Provisional
Probab=96.77 E-value=0.00059 Score=66.50 Aligned_cols=43 Identities=19% Similarity=0.282 Sum_probs=37.0
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..++++...+..++ .|+|||..|+|||||++.+++-.++.+|.
T Consensus 1253 ~VL~~is~~I~~Ge--kVaIVGrSGSGKSTLl~lL~rl~~p~~G~ 1295 (1622)
T PLN03130 1253 PVLHGLSFEISPSE--KVGIVGRTGAGKSSMLNALFRIVELERGR 1295 (1622)
T ss_pred ceecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhCcCCCCCce
Confidence 46777777788888 99999999999999999999988776554
No 403
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=96.77 E-value=0.0029 Score=53.99 Aligned_cols=46 Identities=20% Similarity=0.371 Sum_probs=39.3
Q ss_pred CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..+..+...+..+.+ +.+-++|+.|+||||+|+.+....
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4588999999999999988765 568899999999999999887654
No 404
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.77 E-value=0.002 Score=52.23 Aligned_cols=28 Identities=36% Similarity=0.449 Sum_probs=23.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
.+. .|.|+|++|+|||||++.+.+...+
T Consensus 143 ~~~--~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 143 SRK--NIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred CCC--EEEEECCCCCCHHHHHHHHHccCCc
Confidence 355 9999999999999999999877643
No 405
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.0024 Score=55.00 Aligned_cols=23 Identities=48% Similarity=0.663 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.+|+|+|++|+||||++..+...
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 39999999999999999887654
No 406
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.76 E-value=0.0026 Score=53.95 Aligned_cols=45 Identities=36% Similarity=0.469 Sum_probs=34.1
Q ss_pred CccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 153 KTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.+.|.+..++.|...+. . ...+-+.++|++|+|||+||+.|.+..
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el 241 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET 241 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 36678877777766653 1 123467899999999999999999865
No 407
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.76 E-value=0.0027 Score=56.01 Aligned_cols=46 Identities=22% Similarity=0.344 Sum_probs=38.7
Q ss_pred CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.|..++..+.+ +.+-++|+.|+||||+|+.+....
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588999999999888887664 456899999999999999987654
No 408
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.76 E-value=0.0035 Score=52.61 Aligned_cols=47 Identities=26% Similarity=0.324 Sum_probs=36.6
Q ss_pred CCccchHHHHHHHHHhhhc---------C-----CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIED---------H-----NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~---------~-----~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|.+..+..+...+.. + ..+-|-++|+.|+||||||+.+.....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588988888877777643 0 135789999999999999999987653
No 409
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=96.76 E-value=0.0011 Score=59.16 Aligned_cols=42 Identities=21% Similarity=0.299 Sum_probs=33.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+.+++ .++|+|++|+|||||++.+.+...+.+|.
T Consensus 23 il~~vs~~i~~Ge--~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~ 64 (648)
T PRK10535 23 VLKGISLDIYAGE--MVAIVGASGSGKSTLMNILGCLDKPTSGT 64 (648)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence 3445555566778 99999999999999999999988776553
No 410
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.75 E-value=0.0022 Score=58.32 Aligned_cols=47 Identities=23% Similarity=0.375 Sum_probs=36.9
Q ss_pred CCccchHHHHHHHHHhhhc------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIED------HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~------~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|.+..++.|..++.. ..-.++.++|++|+||||||+.|.+...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3478988888888876541 1234799999999999999999998763
No 411
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.75 E-value=0.0019 Score=51.35 Aligned_cols=27 Identities=48% Similarity=0.717 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|.++|++|+||||++..+.....
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 356999999999999998888876553
No 412
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.74 E-value=0.0022 Score=57.33 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=38.7
Q ss_pred CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.|.+++..+.+ +.+-++|+.|+||||+++.+.+..
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999988764 466799999999999999877654
No 413
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=96.73 E-value=0.0027 Score=51.91 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=36.5
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.+.++|.+..+..+...+.+.+..=+-+.|..|+||||||+.+.+-.
T Consensus 7 f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 7 FSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred HHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 35688999888877765554333358999999999999999986654
No 414
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.72 E-value=0.0031 Score=49.31 Aligned_cols=38 Identities=32% Similarity=0.504 Sum_probs=27.1
Q ss_pred HHHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 161 ISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 161 ~~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..+++..+.. ++..+|+|-|++|+|||||+..+...+.
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~ 54 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELR 54 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHh
Confidence 3445555543 5678999999999999999998766553
No 415
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=96.72 E-value=0.00054 Score=66.33 Aligned_cols=42 Identities=19% Similarity=0.361 Sum_probs=32.6
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDF 204 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~F 204 (206)
++++...+..++ +++|+|++|+|||||++.+.+...+.+|.+
T Consensus 442 l~~i~l~i~~G~--~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i 483 (1490)
T TIGR01271 442 LKNISFKLEKGQ--LLAVAGSTGSGKSSLLMMIMGELEPSEGKI 483 (1490)
T ss_pred eeeeEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 334444444566 999999999999999999999887766653
No 416
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.72 E-value=0.0028 Score=55.77 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=39.6
Q ss_pred CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..+..|.+.+..+.+. -+-++|+.|+||||+|+.+....
T Consensus 24 ~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 55899999999999999887644 68899999999999999987654
No 417
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.0038 Score=51.51 Aligned_cols=51 Identities=18% Similarity=0.202 Sum_probs=41.8
Q ss_pred cccCCCCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 147 EERPIGKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 147 ~~~~~~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+|.....++|.+.....+...+..+.+ +-+-+.|+.|+||||||..+....
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHH
Confidence 334445689999999999999988764 468999999999999999877654
No 418
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=96.71 E-value=0.00058 Score=57.90 Aligned_cols=42 Identities=26% Similarity=0.427 Sum_probs=30.2
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~ 195 (206)
+-.||....+.+-.-.|..+. .-|+||.||+|||||.+.|.+
T Consensus 87 dLa~G~k~LL~~a~L~L~~Gr--RYGLvGrNG~GKsTLLRaia~ 128 (582)
T KOG0062|consen 87 DLAYGGKILLNKANLTLSRGR--RYGLVGRNGIGKSTLLRAIAN 128 (582)
T ss_pred eeeecchhhhcCCceeeeccc--ccceeCCCCCcHHHHHHHHHh
Confidence 345675544443333344455 889999999999999999988
No 419
>PRK09862 putative ATP-dependent protease; Provisional
Probab=96.70 E-value=0.0019 Score=55.63 Aligned_cols=49 Identities=20% Similarity=0.243 Sum_probs=38.1
Q ss_pred CCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 150 PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 150 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
+...++|....+..+......+. .+.++|++|+|||||++.+.+-..+.
T Consensus 189 d~~~v~Gq~~~~~al~laa~~G~--~llliG~~GsGKTtLak~L~gllpp~ 237 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITAAGGH--NLLLIGPPGTGKTMLASRINGLLPDL 237 (506)
T ss_pred CeEEEECcHHHHhhhheeccCCc--EEEEECCCCCcHHHHHHHHhccCCCC
Confidence 44567787777777665555566 99999999999999999998876543
No 420
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.70 E-value=0.0016 Score=49.87 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~ 195 (206)
.+++.|.|+||+|||||.+.|..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 36999999999999999999873
No 421
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.69 E-value=0.0019 Score=52.12 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
...+-++|++|+|||||++.+.+...
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~ 55 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMG 55 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 44678999999999999999988764
No 422
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.66 E-value=0.0032 Score=52.07 Aligned_cols=24 Identities=29% Similarity=0.497 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..|.|+|++|+||||+++.+.+..
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 499999999999999999988765
No 423
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=96.65 E-value=0.00073 Score=65.60 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=36.3
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
..++++...+..++ .|+|||..|+|||||++.+++-.++.+|.
T Consensus 1300 ~vL~~is~~I~~Ge--kiaIVGrTGsGKSTL~~lL~rl~~~~~G~ 1342 (1522)
T TIGR00957 1300 LVLRHINVTIHGGE--KVGIVGRTGAGKSSLTLGLFRINESAEGE 1342 (1522)
T ss_pred ccccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCccCCCCe
Confidence 46677777777788 99999999999999999999988776554
No 424
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.0026 Score=52.88 Aligned_cols=45 Identities=20% Similarity=0.280 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 157 LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 157 ~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+...+..+......+. .++|||+.|.||||+.+.+|...++++|.
T Consensus 275 ~r~iL~~isf~i~~g~--tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 275 RRPILNGISFTIPLGK--TVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred cchhhcCccccccCcc--EEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 4455555655555566 99999999999999999999999887664
No 425
>PTZ00243 ABC transporter; Provisional
Probab=96.62 E-value=0.0008 Score=65.43 Aligned_cols=42 Identities=24% Similarity=0.316 Sum_probs=36.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ .|+|||..|+|||||++.+.+-.++.+|.
T Consensus 1325 vL~~vsf~I~~Ge--kVaIVGrTGSGKSTLl~lLlrl~~p~~G~ 1366 (1560)
T PTZ00243 1325 VLRGVSFRIAPRE--KVGIVGRTGSGKSTLLLTFMRMVEVCGGE 1366 (1560)
T ss_pred eeecceEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 5777777777888 99999999999999999999988776554
No 426
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=96.62 E-value=0.0014 Score=64.93 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=34.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+.+++ +++|+|++|+|||||++.+.+...+.+|.
T Consensus 945 aL~~lsl~I~~Ge--i~aLLG~NGAGKSTLLkiLaGLl~PtsG~ 986 (2272)
T TIGR01257 945 AVDRLNITFYENQ--ITAFLGHNGAGKTTTLSILTGLLPPTSGT 986 (2272)
T ss_pred EEEeeEEEEcCCc--EEEEECCCCChHHHHHHHHhcCCCCCceE
Confidence 4555555566677 99999999999999999999988776554
No 427
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.62 E-value=0.0047 Score=49.87 Aligned_cols=32 Identities=28% Similarity=0.305 Sum_probs=24.3
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
|...+..+. -|.|.|+.|+|||||++.+.+..
T Consensus 125 L~~~v~~~~--~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 125 LREAVLARK--NILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred HHHHHHcCC--eEEEECCCCCCHHHHHHHHHHHh
Confidence 333343343 67799999999999999998765
No 428
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.62 E-value=0.0043 Score=50.30 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
-..|.++|+.|+||||+++.+....
T Consensus 133 ~~~I~l~G~~GsGKStvg~~La~~L 157 (309)
T PRK08154 133 RRRIALIGLRGAGKSTLGRMLAARL 157 (309)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHc
Confidence 4599999999999999999998664
No 429
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.62 E-value=0.0012 Score=47.58 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=26.1
Q ss_pred HhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 166 RCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 166 ~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
..+.+++ ++.+.|++|+|||||...+.+....
T Consensus 23 ~Tia~Ge--ivtlMGPSGcGKSTLls~~~G~La~ 54 (213)
T COG4136 23 FTIAKGE--IVTLMGPSGCGKSTLLSWMIGALAG 54 (213)
T ss_pred EEecCCc--EEEEECCCCccHHHHHHHHHhhccc
Confidence 3344577 9999999999999999998877643
No 430
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=96.60 E-value=0.0036 Score=49.03 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.+.++|++|+|||||++.+.+...
T Consensus 122 ~~~~~G~sgvGKStLiN~L~~~~~ 145 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLINALDPSVK 145 (245)
T ss_pred EEEEECCCCCCHHHHHHHHhhhhh
Confidence 889999999999999999988653
No 431
>PF13245 AAA_19: Part of AAA domain
Probab=96.60 E-value=0.0028 Score=40.27 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=17.3
Q ss_pred eEEEEEcCCCCcHH-HHHHHHHhh
Q 037945 174 KVIGLYGMGGVGKT-TLLKKLNNK 196 (206)
Q Consensus 174 ~vI~IvG~~G~GKT-TLa~~i~~~ 196 (206)
++..|.|++|+||| |+++.+..-
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 37888999999999 555555443
No 432
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=96.59 E-value=0.00062 Score=66.11 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=34.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDF 204 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~F 204 (206)
.++++...+..++ .++|+|++|+|||||++.+.+...+.+|..
T Consensus 653 ~l~~isl~i~~G~--~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i 695 (1522)
T TIGR00957 653 TLNGITFSIPEGA--LVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695 (1522)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCccCCcEE
Confidence 4555655566677 999999999999999999999887765643
No 433
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.59 E-value=0.0048 Score=47.95 Aligned_cols=49 Identities=22% Similarity=0.458 Sum_probs=35.6
Q ss_pred CCCccchHHHHHHHHHh----hhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 151 IGKTVGLDSIISEVWRC----IEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~----L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
....+|.+...+.|..- +....-.-+-+||..|+|||+|++.+.+....
T Consensus 26 l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~ 78 (249)
T PF05673_consen 26 LDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYAD 78 (249)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhh
Confidence 35578877766655544 33334456788999999999999999887643
No 434
>PRK10646 ADP-binding protein; Provisional
Probab=96.59 E-value=0.0047 Score=44.68 Aligned_cols=35 Identities=31% Similarity=0.416 Sum_probs=27.6
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
+.|...|..++ +|.+.|.=|+|||||+|.+.....
T Consensus 19 ~~la~~l~~g~--vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 19 ARVAKACDGAT--VIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred HHHHHhCCCCc--EEEEECCCCCCHHHHHHHHHHHcC
Confidence 34445555566 999999999999999999977653
No 435
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.59 E-value=0.0027 Score=51.23 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+...+|+|.|++|+|||||+..+....
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 345699999999999999999987654
No 436
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.59 E-value=0.0025 Score=52.53 Aligned_cols=27 Identities=22% Similarity=0.373 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
-...++|||++|+|||.+++.|++...
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcC
Confidence 456999999999999999999999864
No 437
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.58 E-value=0.21 Score=40.91 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.-+-++|+.|+|||+|+..|.+..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH
Confidence 579999999999999999998865
No 438
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.58 E-value=0.0041 Score=53.64 Aligned_cols=46 Identities=35% Similarity=0.469 Sum_probs=35.0
Q ss_pred CCccchHHHHHHHHHhhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..+.|.+..++.|...+.- ...+-|-++|++|+|||++++.+++..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh
Confidence 3466788877777766531 123468899999999999999999875
No 439
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.56 E-value=0.0012 Score=53.08 Aligned_cols=34 Identities=29% Similarity=0.577 Sum_probs=28.4
Q ss_pred hhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+.+++ +..|.|.+|+|||||++++..-.+|++|.
T Consensus 51 v~~Ge--IfViMGLSGSGKSTLvR~~NrLiept~G~ 84 (386)
T COG4175 51 VEEGE--IFVIMGLSGSGKSTLVRLLNRLIEPTRGE 84 (386)
T ss_pred ecCCe--EEEEEecCCCCHHHHHHHHhccCCCCCce
Confidence 34466 88999999999999999999888776554
No 440
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.56 E-value=0.004 Score=49.58 Aligned_cols=36 Identities=36% Similarity=0.645 Sum_probs=27.8
Q ss_pred HHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 162 SEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 162 ~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.+++..+.. ++-.+|+|-|.+|+|||||.-.+-...
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 345555554 677799999999999999998776554
No 441
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.54 E-value=0.0052 Score=49.25 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
-+-++|++|+||||+|+.+....
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57799999999999997765543
No 442
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=96.54 E-value=0.00092 Score=56.49 Aligned_cols=31 Identities=32% Similarity=0.396 Sum_probs=26.0
Q ss_pred hhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
+..++ +++|+|++|+|||||++.|.....+.
T Consensus 162 I~~Gq--ri~I~G~SGsGKTTLL~~Ia~l~~pd 192 (450)
T PRK06002 162 LCAGQ--RIGIFAGSGVGKSTLLAMLARADAFD 192 (450)
T ss_pred ecCCc--EEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 44567 99999999999999999998766544
No 443
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=96.53 E-value=0.00063 Score=60.29 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=30.0
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
.++++...+..++ +++|+|++|+|||||.+.+.+...+
T Consensus 40 iL~~vs~~i~~Ge--~~aI~G~sGsGKSTLL~~L~g~~~~ 77 (617)
T TIGR00955 40 LLKNVSGVAKPGE--LLAVMGSSGAGKTTLMNALAFRSPK 77 (617)
T ss_pred cccCCEEEEeCCe--EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 3444555555677 9999999999999999999987543
No 444
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=96.53 E-value=0.0033 Score=54.24 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=36.5
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
...++|....+..+...+..+. .+.++|++|+|||||++.+.+-..
T Consensus 191 ~~dv~Gq~~~~~al~~aa~~g~--~vlliG~pGsGKTtlar~l~~llp 236 (499)
T TIGR00368 191 LKDIKGQQHAKRALEIAAAGGH--NLLLFGPPGSGKTMLASRLQGILP 236 (499)
T ss_pred HHHhcCcHHHHhhhhhhccCCC--EEEEEecCCCCHHHHHHHHhcccC
Confidence 3567888777777766666566 899999999999999999987543
No 445
>PLN03140 ABC transporter G family member; Provisional
Probab=96.52 E-value=0.00077 Score=65.03 Aligned_cols=30 Identities=37% Similarity=0.399 Sum_probs=25.5
Q ss_pred hhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
+..++ +++|+|++|+|||||++.+.+...+
T Consensus 188 i~~Ge--~~~llGpnGSGKSTLLk~LaG~l~~ 217 (1470)
T PLN03140 188 IKPSR--MTLLLGPPSSGKTTLLLALAGKLDP 217 (1470)
T ss_pred EeCCe--EEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 33455 9999999999999999999987654
No 446
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.51 E-value=0.0053 Score=53.05 Aligned_cols=46 Identities=26% Similarity=0.340 Sum_probs=31.7
Q ss_pred CCccchHHHHHHHHHhh---hc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCI---ED---------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L---~~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..+.|.+...+.+...+ .. .-.+-+-++|++|+|||+|++.+.+..
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~ 112 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 112 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc
Confidence 34678766555444333 22 113357899999999999999998865
No 447
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.51 E-value=0.0045 Score=53.58 Aligned_cols=40 Identities=30% Similarity=0.478 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 158 DSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 158 ~~~~~~l~~~L~~-----~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..-++++..||.+ ...+++-+.||+|+||||.++.+....
T Consensus 25 kkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 25 KKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred HHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 3455667777764 224588999999999999999998875
No 448
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.50 E-value=0.0028 Score=53.19 Aligned_cols=25 Identities=44% Similarity=0.594 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..+|.++|++|+||||++..+....
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999987643
No 449
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=96.50 E-value=0.0025 Score=54.95 Aligned_cols=40 Identities=25% Similarity=0.491 Sum_probs=28.4
Q ss_pred cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+|.-..++++.-.+ ...+|+|.|++|+||||+++.+....
T Consensus 269 ~g~~RLIDN~~~~~---~~~ii~i~G~sgsGKst~a~~la~~l 308 (512)
T PRK13477 269 CGSTRLIDNVFLMK---RQPIIAIDGPAGAGKSTVTRAVAKKL 308 (512)
T ss_pred eCCeEEEeeeEecc---CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35433444443322 33599999999999999999998765
No 450
>PHA02244 ATPase-like protein
Probab=96.50 E-value=0.0061 Score=50.32 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 158 DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 158 ~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
......+..++..+. -|-++|++|+|||+||+.+....
T Consensus 106 ~~~~~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~l 143 (383)
T PHA02244 106 HYETADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEAL 143 (383)
T ss_pred HHHHHHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHh
Confidence 345556666666555 57889999999999999998764
No 451
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.49 E-value=0.0011 Score=64.05 Aligned_cols=52 Identities=15% Similarity=0.148 Sum_probs=39.0
Q ss_pred ccccCCCCccc-h--HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 146 VEERPIGKTVG-L--DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 146 ~~~~~~~~~~g-~--~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
+...+++..|. + ...++++...+..++ .++|||++|+|||||++++.+..+|
T Consensus 1166 I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~--~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1166 IEIMDVNFRYISRPNVPIYKDLTFSCDSKK--TTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred EEEEEEEEECCCCCCCccccCeeEEEcCCC--EEEEECCCCCCHHHHHHHHHHhCCC
Confidence 33344444553 2 235677777777788 9999999999999999999998776
No 452
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.49 E-value=0.004 Score=56.77 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=39.4
Q ss_pred CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.|...+..+.+. .+-++|+.|+||||+|+.+....
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45889999999999999887654 68899999999999999987665
No 453
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.48 E-value=0.01 Score=48.28 Aligned_cols=36 Identities=14% Similarity=0.288 Sum_probs=28.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
....+...+..+. -|-+.|+.|+|||||++.+....
T Consensus 53 ~~~~vl~~l~~~~--~ilL~G~pGtGKTtla~~lA~~l 88 (327)
T TIGR01650 53 TTKAICAGFAYDR--RVMVQGYHGTGKSTHIEQIAARL 88 (327)
T ss_pred HHHHHHHHHhcCC--cEEEEeCCCChHHHHHHHHHHHH
Confidence 4455666666555 79999999999999999997754
No 454
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.48 E-value=0.0056 Score=48.52 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
-..|.|.|+.|+||||+++.+.+..
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhh
Confidence 3489999999999999999876554
No 455
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.48 E-value=0.003 Score=51.56 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..|.|+|.+|+|||||++.+.+..
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~ 186 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVF 186 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 389999999999999999998764
No 456
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.48 E-value=0.0052 Score=51.76 Aligned_cols=46 Identities=22% Similarity=0.231 Sum_probs=34.5
Q ss_pred CCccchHHHHHHHHHhhhc-------C---------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED-------H---------NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-------~---------~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.+...+.. . ...-|-++|++|+||||||+.+....
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 4588998888877655421 0 12468899999999999999998654
No 457
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.47 E-value=0.0058 Score=52.61 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=38.3
Q ss_pred CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+.....+...+..+.+. .+-++|+.|+||||+|+.+....
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred HHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45889999999999999886543 56789999999999999987654
No 458
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.47 E-value=0.0063 Score=56.00 Aligned_cols=46 Identities=28% Similarity=0.362 Sum_probs=36.2
Q ss_pred CCccchHHHHHHHHHhhhc--------C-CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED--------H-NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~--------~-~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.+...+.. + ....+.++|++|+||||||+.+.+..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3477988888888877763 1 12478899999999999999998754
No 459
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.47 E-value=0.0053 Score=49.28 Aligned_cols=34 Identities=29% Similarity=0.585 Sum_probs=26.6
Q ss_pred HHHhhhc-CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 164 VWRCIED-HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 164 l~~~L~~-~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
++..+.. ...-+|.|.|++|+||||+|+.+....
T Consensus 82 ~~~~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l 116 (301)
T PRK04220 82 LWRRIRKSKEPIIILIGGASGVGTSTIAFELASRL 116 (301)
T ss_pred HHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444 345689999999999999999998875
No 460
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.47 E-value=0.0058 Score=53.79 Aligned_cols=46 Identities=20% Similarity=0.306 Sum_probs=39.3
Q ss_pred CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+.....|...+..+.+ +.+-++|+.|+||||+|+.+.+..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999899999999988765 467899999999999999887664
No 461
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.47 E-value=0.0028 Score=53.58 Aligned_cols=24 Identities=50% Similarity=0.742 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.+|.++|++|+||||++..+....
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 399999999999999888876544
No 462
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.17 Score=45.84 Aligned_cols=46 Identities=28% Similarity=0.379 Sum_probs=36.7
Q ss_pred CCccchHHHHHHHHHhhhc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED---------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..+..+...+.. ..+.+.-.+||.|||||-||+.+....
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L 545 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL 545 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh
Confidence 3488999888888888763 234578889999999999999876654
No 463
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.46 E-value=0.0052 Score=50.26 Aligned_cols=43 Identities=28% Similarity=0.320 Sum_probs=36.5
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
++|.+.....+...+..+. -+-+.|++|+|||+||+.+.....
T Consensus 26 ~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l~ 68 (329)
T COG0714 26 VVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARALG 68 (329)
T ss_pred eeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHhC
Confidence 6788888888777777777 799999999999999999987653
No 464
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.46 E-value=0.0051 Score=53.89 Aligned_cols=46 Identities=22% Similarity=0.282 Sum_probs=39.5
Q ss_pred CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..+..|...+..+.+. .+-++|+.|+||||+|+.+....
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 45899999999999999887644 57899999999999999987764
No 465
>PTZ00243 ABC transporter; Provisional
Probab=96.46 E-value=0.0021 Score=62.55 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=30.2
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+...+..++ +++|+|++|+|||||++.|.+...+.+|.
T Consensus 679 isl~i~~G~--~~~IiG~nGsGKSTLL~~i~G~~~~~~G~ 716 (1560)
T PTZ00243 679 VSVSVPRGK--LTVVLGATGSGKSTLLQSLLSQFEISEGR 716 (1560)
T ss_pred eEEEECCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence 333344466 99999999999999999999987776564
No 466
>PRK06851 hypothetical protein; Provisional
Probab=96.46 E-value=0.12 Score=42.96 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=30.1
Q ss_pred cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
.|.-..++.+. .+--+++.|-|++|+|||||++.++.....
T Consensus 200 ~G~~s~~~~l~----~~~~~~~~i~G~pG~GKstl~~~i~~~a~~ 240 (367)
T PRK06851 200 KGAVDFVPSLT----EGVKNRYFLKGRPGTGKSTMLKKIAKAAEE 240 (367)
T ss_pred CcHHhhHHhHh----cccceEEEEeCCCCCcHHHHHHHHHHHHHh
Confidence 35444444443 344568999999999999999999987643
No 467
>PLN03232 ABC transporter C family member; Provisional
Probab=96.46 E-value=0.0011 Score=64.35 Aligned_cols=41 Identities=22% Similarity=0.352 Sum_probs=33.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.++++...+..++ .++|+|+.|+|||||++.+.+...+.+|
T Consensus 632 vL~~inl~i~~Ge--~vaIvG~sGSGKSTLl~lLlG~~~~~~G 672 (1495)
T PLN03232 632 TLSDINLEIPVGS--LVAIVGGTGEGKTSLISAMLGELSHAET 672 (1495)
T ss_pred eeeeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCcccCC
Confidence 4555656666677 9999999999999999999998877644
No 468
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.0065 Score=52.85 Aligned_cols=48 Identities=25% Similarity=0.336 Sum_probs=35.7
Q ss_pred CCccchHHHHHHHHHhhhc------------CCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 152 GKTVGLDSIISEVWRCIED------------HNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~------------~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
..+-|.+..+.++...+.. ...+=+-++||+|+|||.||+.|.+...+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~v 249 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGV 249 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCC
Confidence 3466777777766666542 12345779999999999999999998754
No 469
>PLN03130 ABC transporter C family member; Provisional
Probab=96.45 E-value=0.0014 Score=63.89 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=33.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTE 201 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~ 201 (206)
.++++...+..++ .++|+|+.|+|||||++.+.+...+.+
T Consensus 632 vL~~inl~i~~Ge--~vaIvG~sGSGKSTLl~lLlG~~~~~~ 671 (1622)
T PLN03130 632 TLSNINLDVPVGS--LVAIVGSTGEGKTSLISAMLGELPPRS 671 (1622)
T ss_pred eeeceeEEecCCC--EEEEECCCCCCHHHHHHHHHHhhccCC
Confidence 4556666666778 999999999999999999999988765
No 470
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=96.44 E-value=0.0058 Score=50.77 Aligned_cols=43 Identities=26% Similarity=0.381 Sum_probs=31.5
Q ss_pred chHHHHHHHHHhhhc---CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 156 GLDSIISEVWRCIED---HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 156 g~~~~~~~l~~~L~~---~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
....+++.+...... ...++|+|+|..|+|||||+..+.....
T Consensus 185 NTpeDl~~l~~~~~~~~~~~~~~~~~~g~~~~GKtt~~~~l~~~l~ 230 (366)
T PRK14489 185 NTPEDLEQLRAIPDGTTTGAPPLLGVVGYSGTGKTTLLEKLIPELI 230 (366)
T ss_pred CCHHHHHHHhhhhhcccCCCccEEEEecCCCCCHHHHHHHHHHHHH
Confidence 345566666554321 2466999999999999999999987664
No 471
>PRK06526 transposase; Provisional
Probab=96.44 E-value=0.0034 Score=49.42 Aligned_cols=23 Identities=30% Similarity=0.326 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
-+-++|++|+|||+|+..|....
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHH
Confidence 68999999999999999887653
No 472
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.44 E-value=0.0077 Score=47.29 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
....|.++|..|+|||||++.|.+...
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~ 56 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERK 56 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCC
Confidence 345899999999999999999998653
No 473
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.0032 Score=52.17 Aligned_cols=38 Identities=24% Similarity=0.323 Sum_probs=31.2
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+.-.+..++ ++=|+|-||+||||+++++-+-.+|++|.
T Consensus 342 iNl~ikrGe--lvFliG~NGsGKST~~~LLtGL~~PqsG~ 379 (546)
T COG4615 342 INLTIKRGE--LVFLIGGNGSGKSTLAMLLTGLYQPQSGE 379 (546)
T ss_pred eeeEEecCc--EEEEECCCCCcHHHHHHHHhcccCCCCCc
Confidence 344455677 89999999999999999999988887664
No 474
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=96.41 E-value=0.0014 Score=56.46 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=32.9
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
..+++++..+..++ +++|||.+|+||||++..|.+-...
T Consensus 23 ~~v~~vsf~v~~GE--~lgIvGESGsGKSt~a~~i~gll~~ 61 (539)
T COG1123 23 PAVRDVSFEVEPGE--ILGIVGESGSGKSTLALALMGLLPE 61 (539)
T ss_pred eeeecceEEecCCc--EEEEEcCCCCCHHHHHHHHhccCCC
Confidence 35566777778889 9999999999999999999987643
No 475
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.40 E-value=0.005 Score=43.70 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=30.1
Q ss_pred chHHHHHHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC
Q 037945 156 GLDSIISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDF 204 (206)
Q Consensus 156 g~~~~~~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~F 204 (206)
|......++...+.. ....-|-|.|..|+||+++|+.|+.......+.|
T Consensus 2 G~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~ 52 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPF 52 (138)
T ss_dssp -SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-C
T ss_pred CCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCe
Confidence 333344444444443 2233789999999999999999998765432333
No 476
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.39 E-value=0.0031 Score=56.64 Aligned_cols=24 Identities=46% Similarity=0.582 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.+|+++|++|+||||++.++....
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHhhH
Confidence 499999999999999999988765
No 477
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=96.39 E-value=5.5e-05 Score=56.68 Aligned_cols=49 Identities=22% Similarity=0.350 Sum_probs=37.3
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.+.|+....+..++..+..++ ++++.||||.||||..-+|.+-..+++|
T Consensus 11 ~K~y~kr~Vv~~Vsl~v~~GE--iVGLLGPNGAGKTT~Fymi~Glv~~d~G 59 (243)
T COG1137 11 AKSYKKRKVVNDVSLEVNSGE--IVGLLGPNGAGKTTTFYMIVGLVRPDSG 59 (243)
T ss_pred hHhhCCeeeeeeeeEEEcCCc--EEEEECCCCCCceeEEEEEEEEEecCCc
Confidence 445666656666666677788 9999999999999988777776666544
No 478
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.37 E-value=0.0044 Score=52.26 Aligned_cols=26 Identities=38% Similarity=0.548 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...+|.++|++|+||||++..+....
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l 124 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYY 124 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999887654
No 479
>PRK12288 GTPase RsgA; Reviewed
Probab=96.37 E-value=0.0038 Score=51.39 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
++.++|.+|+|||||++.+.++..
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccc
Confidence 688999999999999999987643
No 480
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.37 E-value=0.007 Score=52.53 Aligned_cols=46 Identities=15% Similarity=0.298 Sum_probs=39.0
Q ss_pred CCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+.....+...+..+.+. .+-++|+.|+||||+|+.+....
T Consensus 14 deiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 45899998999999999887754 66899999999999999877654
No 481
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.36 E-value=0.008 Score=50.55 Aligned_cols=47 Identities=21% Similarity=0.176 Sum_probs=35.2
Q ss_pred CCCccchHHHHHHHHHhhh-------c-------C----CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSIISEVWRCIE-------D-------H----NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~-------~-------~----~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...++|.+..++.+...+. . + .-..|.++|++|+|||+||+.+....
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l 140 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL 140 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc
Confidence 3568899888887765551 1 0 02468999999999999999998654
No 482
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.0039 Score=51.68 Aligned_cols=25 Identities=48% Similarity=0.690 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..+|.++|++|+||||++..+....
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4599999999999999999887654
No 483
>PRK12289 GTPase RsgA; Reviewed
Probab=96.34 E-value=0.0046 Score=50.98 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=25.5
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
+.|...|.+ . ++.|+|++|+|||||++.+.++..
T Consensus 164 ~eL~~~L~~-k--i~v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 164 EALLEQLRN-K--ITVVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred HHHhhhhcc-c--eEEEEeCCCCCHHHHHHHHcCccc
Confidence 344444432 3 689999999999999999987643
No 484
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.32 E-value=0.0096 Score=49.42 Aligned_cols=49 Identities=16% Similarity=0.176 Sum_probs=39.9
Q ss_pred cCCCCccchHHHHHHHHHhhhcCCCe-EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 149 RPIGKTVGLDSIISEVWRCIEDHNEK-VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 149 ~~~~~~~g~~~~~~~l~~~L~~~~~~-vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.....++|.+.....+...+..+.+. -+-++|+.|+||+|||..+....
T Consensus 16 ~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 16 RETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 33456899999999999999887644 68999999999999998765543
No 485
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.32 E-value=0.0041 Score=51.87 Aligned_cols=25 Identities=44% Similarity=0.604 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..+|.++|++|+||||.+..+....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4599999999999999999887654
No 486
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.31 E-value=0.0063 Score=55.13 Aligned_cols=46 Identities=30% Similarity=0.354 Sum_probs=34.6
Q ss_pred CCccchHHHHHHHHHhhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+.+.|.+..++.+...+.- ...+-|.++|++|+|||||++.+.+..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~ 236 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA 236 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 3467888877777665531 123468899999999999999998865
No 487
>PRK05642 DNA replication initiation factor; Validated
Probab=96.31 E-value=0.004 Score=48.42 Aligned_cols=24 Identities=38% Similarity=0.675 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..+-|+|+.|+|||.|++.+++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~ 69 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF 69 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998754
No 488
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.31 E-value=0.002 Score=60.06 Aligned_cols=42 Identities=29% Similarity=0.398 Sum_probs=34.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++.+...+..++ .+++||++|+||||+++++....+|.+|.
T Consensus 368 Il~g~sl~i~~G~--~valVG~SGsGKST~i~LL~RfydP~~G~ 409 (1228)
T KOG0055|consen 368 ILKGVSLKIPSGQ--TVALVGPSGSGKSTLIQLLARFYDPTSGE 409 (1228)
T ss_pred hhCCeEEEeCCCC--EEEEECCCCCCHHHHHHHHHHhcCCCCce
Confidence 4555666666788 99999999999999999999988887553
No 489
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=96.31 E-value=0.0007 Score=65.16 Aligned_cols=37 Identities=32% Similarity=0.497 Sum_probs=28.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++...+..++ +++|+|++|+|||||++.+.+...
T Consensus 778 iL~~vs~~i~~Ge--~~aI~G~sGaGKSTLL~~Lag~~~ 814 (1394)
T TIGR00956 778 ILNNVDGWVKPGT--LTALMGASGAGKTTLLNVLAERVT 814 (1394)
T ss_pred eeeCCEEEEECCE--EEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444444444566 999999999999999999998764
No 490
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.30 E-value=0.0083 Score=53.19 Aligned_cols=46 Identities=20% Similarity=0.272 Sum_probs=38.9
Q ss_pred CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+.....|..++..+.+ +-+-++|+.|+||||+|+.+....
T Consensus 16 ~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred hhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHh
Confidence 4588999899999998887653 467899999999999999987765
No 491
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0091 Score=48.77 Aligned_cols=45 Identities=38% Similarity=0.503 Sum_probs=34.7
Q ss_pred ccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 154 TVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
+-|.+..+++|-+.+. + +..+=|-++|++|.|||-||+.|.|...
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~ 210 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTD 210 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 4467777777776653 1 3455788999999999999999999764
No 492
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.28 E-value=0.0098 Score=50.45 Aligned_cols=26 Identities=42% Similarity=0.579 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..+|.++|++|+||||++..+.....
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56999999999999999999877654
No 493
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.27 E-value=0.0089 Score=49.68 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=23.9
Q ss_pred HHHHHHHHhhhcC----CCeEEEEEcCCCCcHHH-HHHHHH
Q 037945 159 SIISEVWRCIEDH----NEKVIGLYGMGGVGKTT-LLKKLN 194 (206)
Q Consensus 159 ~~~~~l~~~L~~~----~~~vI~IvG~~G~GKTT-La~~i~ 194 (206)
.....+..++.++ +-++|++|||.|+|||| |||+..
T Consensus 185 ~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAa 225 (407)
T COG1419 185 EKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAA 225 (407)
T ss_pred HHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHH
Confidence 3444455554443 35699999999999985 555543
No 494
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=96.26 E-value=0.01 Score=47.91 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhhcC--CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 158 DSIISEVWRCIEDH--NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 158 ~~~~~~l~~~L~~~--~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...+.+++..|.+. ....|.|+|.+|+||||+++.|.+..
T Consensus 21 q~~l~~~l~~l~~~~~~~~rIllvGktGVGKSSliNsIlG~~ 62 (313)
T TIGR00991 21 QTKLLELLGKLKEEDVSSLTILVMGKGGVGKSSTVNSIIGER 62 (313)
T ss_pred HHHHHHHHHhcccccccceEEEEECCCCCCHHHHHHHHhCCC
Confidence 34555666666664 34589999999999999999999864
No 495
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.26 E-value=0.034 Score=40.01 Aligned_cols=108 Identities=8% Similarity=0.100 Sum_probs=67.8
Q ss_pred cchhhhhhhhhHhhhhhhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q 037945 5 INPIMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVD 84 (206)
Q Consensus 5 ~s~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~wl~~l~~~~~~~e 84 (206)
.+++++++...|...+.+...-...++.-++.|.+.++.|...+.+|+.. +...+..-+.-+.++.+...+++
T Consensus 7 ~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~-------~~eld~~~~ee~e~L~~~L~~g~ 79 (147)
T PF05659_consen 7 GGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKL-------NVELDRPRQEEIERLKELLEKGK 79 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHH-------hhhcCCchhHHHHHHHHHHHHHH
Confidence 34455555554555555555556667777777777777777777776554 22233334777889999999999
Q ss_pred HHHhhhhHhhhhhccCCccCCCCcccccchhHHHHHHHHHHHHHH
Q 037945 85 YILHRGDEEIQKTCLRKTCFPGSWSSRDKLGKEASEKIVAVEELI 129 (206)
Q Consensus 85 d~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 129 (206)
+++++|..-. + .++...++.+++|.+.-+.+....
T Consensus 80 ~LV~k~sk~~-------r---~n~~kk~~y~~Ki~~le~~l~~f~ 114 (147)
T PF05659_consen 80 ELVEKCSKVR-------R---WNLYKKPRYARKIEELEESLRRFI 114 (147)
T ss_pred HHHHHhcccc-------H---HHHHhhHhHHHHHHHHHHHHHHHh
Confidence 9998864311 1 133445667777776655555443
No 496
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.25 E-value=0.0062 Score=50.05 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
.|.|.|+.|+|||||++.+.+...+
T Consensus 164 nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 164 TMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred eEEEECCCCccHHHHHHHHHcccCC
Confidence 7999999999999999999887543
No 497
>PRK12377 putative replication protein; Provisional
Probab=96.22 E-value=0.0047 Score=48.42 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..-+.++|++|+|||+||..|.+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~ 126 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL 126 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34789999999999999999998764
No 498
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.21 E-value=0.0063 Score=52.21 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=36.5
Q ss_pred CccchH---HHHHHHHHhhhcC--------C-CeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 153 KTVGLD---SIISEVWRCIEDH--------N-EKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 153 ~~~g~~---~~~~~l~~~L~~~--------~-~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
.+-|-+ .++++|+..|++. . .+=|-++|++|.|||-||+.|.+...+
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V 363 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV 363 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC
Confidence 345543 4788889999872 2 456889999999999999999987654
No 499
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=96.21 E-value=0.00042 Score=51.93 Aligned_cols=41 Identities=27% Similarity=0.388 Sum_probs=32.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.+.+++..+..++ .=.|+|+||.||||+.-.|.+..++..|
T Consensus 20 Aln~ls~~v~~Ge--lr~lIGpNGAGKTT~mD~ItGKtrp~~G 60 (249)
T COG4674 20 ALNDLSFSVDPGE--LRVLIGPNGAGKTTLMDVITGKTRPQEG 60 (249)
T ss_pred eeeeeEEEecCCe--EEEEECCCCCCceeeeeeecccCCCCcc
Confidence 4455556666677 5678999999999999999998877644
No 500
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.20 E-value=0.0097 Score=53.89 Aligned_cols=45 Identities=24% Similarity=0.280 Sum_probs=35.5
Q ss_pred CccchHHHHHHHHHhhhc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 153 KTVGLDSIISEVWRCIED---------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++|.+..++.|...+.. .....+-++|+.|+|||+||+.+....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 477888888888877762 123478899999999999999987765
Done!