Query 037945
Match_columns 206
No_of_seqs 159 out of 1846
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 09:45:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037945.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037945hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qfl_A MLA10; coiled-coil, (CC 99.6 1.6E-15 5.5E-20 103.9 6.9 82 8-96 2-84 (115)
2 2a5y_B CED-4; apoptosis; HET: 99.0 1.6E-10 5.3E-15 99.2 5.8 50 155-205 131-185 (549)
3 1vt4_I APAF-1 related killer D 98.7 7E-09 2.4E-13 93.8 2.8 51 154-205 130-181 (1221)
4 3sfz_A APAF-1, apoptotic pepti 98.7 1.9E-08 6.5E-13 93.1 5.4 53 152-204 124-178 (1249)
5 1z6t_A APAF-1, apoptotic prote 98.6 1.9E-08 6.4E-13 86.8 4.2 46 152-197 124-171 (591)
6 1htw_A HI0065; nucleotide-bind 98.3 6.7E-07 2.3E-11 64.3 5.2 46 155-203 17-62 (158)
7 1jbk_A CLPB protein; beta barr 98.3 1.8E-06 6.2E-11 62.8 6.7 46 152-197 22-67 (195)
8 2p65_A Hypothetical protein PF 98.2 2.5E-06 8.6E-11 61.9 5.8 46 152-197 22-67 (187)
9 2chg_A Replication factor C sm 98.1 5.3E-06 1.8E-10 61.7 5.9 46 152-197 17-62 (226)
10 2obl_A ESCN; ATPase, hydrolase 98.1 2.3E-06 7.8E-11 69.2 3.9 53 145-200 45-98 (347)
11 2qen_A Walker-type ATPase; unk 98.1 6.3E-06 2.2E-10 65.9 6.5 43 152-196 12-54 (350)
12 1in4_A RUVB, holliday junction 98.1 3.6E-06 1.2E-10 67.6 5.0 50 148-197 21-75 (334)
13 1njg_A DNA polymerase III subu 98.1 6.5E-06 2.2E-10 62.0 6.0 47 152-198 23-70 (250)
14 3tif_A Uncharacterized ABC tra 98.0 1.6E-06 5.4E-11 66.4 2.4 37 164-202 24-60 (235)
15 2pcj_A ABC transporter, lipopr 98.0 1.6E-06 5.6E-11 65.8 2.2 40 161-202 20-59 (224)
16 4g1u_C Hemin import ATP-bindin 98.0 2.5E-06 8.7E-11 66.5 3.2 50 152-203 18-67 (266)
17 2qby_A CDC6 homolog 1, cell di 98.0 5.9E-06 2E-10 66.9 5.4 46 152-197 20-69 (386)
18 1b0u_A Histidine permease; ABC 98.0 2.2E-06 7.4E-11 66.7 2.4 40 161-202 22-61 (262)
19 1g6h_A High-affinity branched- 98.0 2.1E-06 7.2E-11 66.6 2.3 47 154-202 16-62 (257)
20 1mv5_A LMRA, multidrug resista 98.0 2.6E-06 8.9E-11 65.5 2.8 39 163-203 20-58 (243)
21 1sgw_A Putative ABC transporte 98.0 1.9E-06 6.5E-11 65.0 1.9 38 163-202 27-64 (214)
22 1ji0_A ABC transporter; ATP bi 98.0 2.2E-06 7.5E-11 65.8 2.3 39 162-202 23-61 (240)
23 2olj_A Amino acid ABC transpor 98.0 2.4E-06 8.2E-11 66.5 2.4 49 152-202 31-79 (263)
24 3gfo_A Cobalt import ATP-bindi 98.0 2.3E-06 7.9E-11 67.0 2.3 39 162-202 25-63 (275)
25 2v9p_A Replication protein E1; 98.0 5.9E-06 2E-10 65.6 4.6 45 150-197 106-150 (305)
26 2pze_A Cystic fibrosis transme 98.0 2.5E-06 8.6E-11 65.0 2.3 35 166-202 29-63 (229)
27 1vpl_A ABC transporter, ATP-bi 98.0 2.7E-06 9.2E-11 65.9 2.4 49 152-202 22-70 (256)
28 2dpy_A FLII, flagellum-specifi 98.0 5.6E-06 1.9E-10 69.0 4.4 55 145-202 131-186 (438)
29 2ihy_A ABC transporter, ATP-bi 98.0 2.8E-06 9.6E-11 66.7 2.3 49 152-202 28-76 (279)
30 2cbz_A Multidrug resistance-as 97.9 2.3E-06 7.9E-11 65.6 1.6 37 164-202 24-60 (237)
31 2ff7_A Alpha-hemolysin translo 97.9 3.1E-06 1.1E-10 65.3 2.3 37 164-202 28-64 (247)
32 2nq2_C Hypothetical ABC transp 97.9 3.1E-06 1.1E-10 65.5 2.3 39 162-202 22-60 (253)
33 2fna_A Conserved hypothetical 97.9 1.2E-05 4E-10 64.4 5.7 42 152-197 13-54 (357)
34 2yz2_A Putative ABC transporte 97.9 3.5E-06 1.2E-10 65.7 2.4 37 164-202 26-62 (266)
35 2ixe_A Antigen peptide transpo 97.9 3.5E-06 1.2E-10 65.8 2.4 39 162-202 36-74 (271)
36 1sxj_C Activator 1 40 kDa subu 97.9 1.3E-05 4.5E-10 64.4 5.8 47 151-197 24-70 (340)
37 1w5s_A Origin recognition comp 97.9 6.3E-06 2.2E-10 67.6 4.0 46 152-197 22-76 (412)
38 1z47_A CYSA, putative ABC-tran 97.9 2.6E-07 9E-12 74.8 -4.4 49 152-202 21-70 (355)
39 1iqp_A RFCS; clamp loader, ext 97.9 2E-05 6.8E-10 62.5 6.5 46 152-197 25-70 (327)
40 1fnn_A CDC6P, cell division co 97.9 2.4E-05 8.4E-10 63.5 6.4 48 152-199 17-70 (389)
41 3ec2_A DNA replication protein 97.9 1.5E-05 5.1E-10 58.0 4.6 42 157-198 19-63 (180)
42 2qby_B CDC6 homolog 3, cell di 97.8 2.1E-05 7.3E-10 63.8 6.0 46 152-197 20-69 (384)
43 2v1u_A Cell division control p 97.8 1.9E-05 6.5E-10 63.9 5.4 46 152-197 19-68 (387)
44 1sxj_B Activator 1 37 kDa subu 97.8 2.1E-05 7.1E-10 62.2 5.5 46 152-197 21-66 (323)
45 1sxj_D Activator 1 41 kDa subu 97.8 1.6E-05 5.4E-10 63.8 4.9 46 152-197 37-82 (353)
46 1sxj_E Activator 1 40 kDa subu 97.8 1.3E-05 4.5E-10 64.5 4.2 45 152-196 14-59 (354)
47 3fvq_A Fe(3+) IONS import ATP- 97.8 6.8E-06 2.3E-10 66.6 2.5 47 154-202 13-59 (359)
48 3nwj_A ATSK2; P loop, shikimat 97.8 1.5E-05 5.2E-10 61.5 4.4 44 152-197 25-72 (250)
49 3b5x_A Lipid A export ATP-bind 97.8 6.7E-06 2.3E-10 71.0 2.4 51 151-203 347-399 (582)
50 2zu0_C Probable ATP-dependent 97.8 1.1E-05 3.8E-10 62.9 3.4 43 152-196 27-69 (267)
51 2d2e_A SUFC protein; ABC-ATPas 97.8 1.1E-05 3.6E-10 62.3 3.3 34 161-196 19-52 (250)
52 3tui_C Methionine import ATP-b 97.8 8.6E-06 3E-10 66.1 2.7 40 161-202 44-83 (366)
53 3pvs_A Replication-associated 97.8 2.8E-05 9.7E-10 64.9 5.8 47 151-197 25-74 (447)
54 2bbs_A Cystic fibrosis transme 97.8 5.9E-06 2E-10 65.2 1.5 32 169-202 62-93 (290)
55 2gza_A Type IV secretion syste 97.8 1.6E-05 5.4E-10 64.6 4.0 37 162-200 166-202 (361)
56 2yyz_A Sugar ABC transporter, 97.8 9.6E-06 3.3E-10 65.8 2.7 40 161-202 19-58 (359)
57 1rj9_A FTSY, signal recognitio 97.8 2.1E-05 7.1E-10 62.5 4.5 30 173-202 102-131 (304)
58 2it1_A 362AA long hypothetical 97.8 1E-05 3.4E-10 65.8 2.7 40 161-202 19-58 (362)
59 3rlf_A Maltose/maltodextrin im 97.8 1E-05 3.5E-10 66.0 2.7 46 155-202 13-58 (381)
60 3aez_A Pantothenate kinase; tr 97.8 1.9E-05 6.5E-10 62.9 4.2 28 173-200 90-117 (312)
61 3b9q_A Chloroplast SRP recepto 97.8 1.6E-05 5.5E-10 63.1 3.7 29 174-202 101-129 (302)
62 2pt7_A CAG-ALFA; ATPase, prote 97.8 2.3E-05 8E-10 62.9 4.7 41 160-202 160-200 (330)
63 3nh6_A ATP-binding cassette SU 97.8 6.5E-06 2.2E-10 65.4 1.4 40 161-202 70-109 (306)
64 1v43_A Sugar-binding transport 97.7 1.1E-05 3.9E-10 65.7 2.7 38 163-202 29-66 (372)
65 2kjq_A DNAA-related protein; s 97.7 2.3E-05 8E-10 55.5 4.1 26 174-199 37-62 (149)
66 1g29_1 MALK, maltose transport 97.7 1.1E-05 3.7E-10 65.8 2.6 39 162-202 20-58 (372)
67 2ghi_A Transport protein; mult 97.7 1.4E-05 4.7E-10 62.0 3.0 32 166-199 41-72 (260)
68 3n70_A Transport activator; si 97.7 4.2E-05 1.4E-09 53.8 5.2 44 154-197 3-48 (145)
69 2pjz_A Hypothetical protein ST 97.7 1.2E-05 4.2E-10 62.4 2.5 35 164-202 24-58 (263)
70 3pxg_A Negative regulator of g 97.7 5.1E-05 1.7E-09 63.8 6.3 47 151-197 179-225 (468)
71 1oxx_K GLCV, glucose, ABC tran 97.7 7.7E-06 2.6E-10 66.3 1.0 40 161-202 21-60 (353)
72 3j16_B RLI1P; ribosome recycli 97.7 2.3E-05 7.9E-10 67.8 3.9 34 169-204 101-134 (608)
73 1tq4_A IIGP1, interferon-induc 97.7 3.5E-05 1.2E-09 63.6 4.8 30 173-202 69-98 (413)
74 1sq5_A Pantothenate kinase; P- 97.7 5E-05 1.7E-09 60.3 5.6 27 172-198 79-105 (308)
75 3h4m_A Proteasome-activating n 97.7 5.2E-05 1.8E-09 59.1 5.6 46 152-197 17-75 (285)
76 1yqt_A RNAse L inhibitor; ATP- 97.7 2.4E-05 8.3E-10 66.8 3.8 35 167-203 43-77 (538)
77 4eun_A Thermoresistant glucoki 97.7 2.9E-05 9.8E-10 57.6 3.7 24 173-196 29-52 (200)
78 1yqt_A RNAse L inhibitor; ATP- 97.7 2.7E-05 9.1E-10 66.6 3.9 32 170-203 311-342 (538)
79 2qag_B Septin-6, protein NEDD5 97.7 2.4E-05 8.4E-10 64.7 3.5 42 154-196 24-65 (427)
80 2og2_A Putative signal recogni 97.7 2.7E-05 9.4E-10 63.1 3.7 27 174-200 158-184 (359)
81 2chq_A Replication factor C sm 97.7 4.7E-05 1.6E-09 60.1 5.0 46 152-197 17-62 (319)
82 3bk7_A ABC transporter ATP-bin 97.6 2.9E-05 9.8E-10 67.3 3.9 33 170-204 381-413 (607)
83 2qm8_A GTPase/ATPase; G protei 97.6 2.9E-05 9.9E-10 62.5 3.6 40 158-199 42-81 (337)
84 1jr3_A DNA polymerase III subu 97.6 9.1E-05 3.1E-09 59.8 6.5 47 152-198 16-63 (373)
85 3e70_C DPA, signal recognition 97.6 3.9E-05 1.3E-09 61.5 4.1 29 172-200 128-156 (328)
86 2yhs_A FTSY, cell division pro 97.6 8.1E-05 2.8E-09 62.6 6.0 28 173-200 293-320 (503)
87 3ozx_A RNAse L inhibitor; ATP 97.6 2.8E-05 9.6E-10 66.4 3.3 32 170-203 293-324 (538)
88 3cf0_A Transitional endoplasmi 97.6 9.2E-05 3.1E-09 58.5 6.0 46 152-197 15-73 (301)
89 2ehv_A Hypothetical protein PH 97.6 3.3E-05 1.1E-09 58.8 3.4 27 167-195 26-52 (251)
90 2bbw_A Adenylate kinase 4, AK4 97.6 4.3E-05 1.5E-09 58.5 4.0 22 173-194 27-48 (246)
91 3tqc_A Pantothenate kinase; bi 97.6 8E-05 2.7E-09 59.5 5.6 44 155-198 70-117 (321)
92 3bk7_A ABC transporter ATP-bin 97.6 3.3E-05 1.1E-09 66.9 3.5 35 167-203 113-147 (607)
93 3euj_A Chromosome partition pr 97.6 6E-05 2.1E-09 63.4 4.7 30 174-203 30-59 (483)
94 3b9p_A CG5977-PA, isoform A; A 97.6 0.00011 3.8E-09 57.6 6.0 46 152-197 21-78 (297)
95 4fcw_A Chaperone protein CLPB; 97.6 5.2E-05 1.8E-09 59.8 4.2 46 153-198 18-72 (311)
96 3lnc_A Guanylate kinase, GMP k 97.6 1.8E-05 6.1E-10 60.0 1.3 28 168-197 24-52 (231)
97 2qz4_A Paraplegin; AAA+, SPG7, 97.6 0.00015 5.1E-09 55.6 6.5 46 152-197 6-63 (262)
98 1sxj_A Activator 1 95 kDa subu 97.6 0.00011 3.8E-09 62.4 6.2 46 152-197 39-101 (516)
99 3bos_A Putative DNA replicatio 97.5 0.00012 4.2E-09 55.1 5.9 41 158-198 37-77 (242)
100 1cr0_A DNA primase/helicase; R 97.5 4.7E-05 1.6E-09 59.9 3.4 39 160-200 24-62 (296)
101 2npi_A Protein CLP1; CLP1-PCF1 97.5 3.7E-05 1.3E-09 64.4 3.0 38 163-202 130-167 (460)
102 3syl_A Protein CBBX; photosynt 97.5 0.00014 4.7E-09 57.3 6.0 44 154-197 33-91 (309)
103 3pfi_A Holliday junction ATP-d 97.5 0.00013 4.4E-09 58.3 5.8 46 152-197 29-79 (338)
104 2x8a_A Nuclear valosin-contain 97.5 0.00014 4.7E-09 56.8 5.8 47 152-198 10-69 (274)
105 1lv7_A FTSH; alpha/beta domain 97.5 0.00013 4.6E-09 56.0 5.6 47 152-198 12-70 (257)
106 3te6_A Regulatory protein SIR3 97.5 8.5E-05 2.9E-09 59.2 4.2 45 154-198 22-70 (318)
107 1odf_A YGR205W, hypothetical 3 97.5 0.00018 6.2E-09 56.6 6.0 28 171-198 29-56 (290)
108 2oap_1 GSPE-2, type II secreti 97.5 0.00013 4.3E-09 62.0 5.4 40 159-200 248-287 (511)
109 1hqc_A RUVB; extended AAA-ATPa 97.5 0.00011 3.7E-09 58.3 4.8 46 152-197 12-62 (324)
110 2w58_A DNAI, primosome compone 97.5 0.00016 5.6E-09 53.3 5.4 40 159-198 36-79 (202)
111 3k1j_A LON protease, ATP-depen 97.5 0.00013 4.4E-09 63.2 5.4 45 152-198 41-85 (604)
112 4e22_A Cytidylate kinase; P-lo 97.4 8.1E-05 2.8E-09 57.3 3.7 21 174-194 28-48 (252)
113 1ofh_A ATP-dependent HSL prote 97.4 0.00018 6.1E-09 56.5 5.7 46 152-197 15-74 (310)
114 3b60_A Lipid A export ATP-bind 97.4 4.6E-05 1.6E-09 65.7 2.5 40 161-202 359-398 (582)
115 1qvr_A CLPB protein; coiled co 97.4 0.00014 4.7E-09 65.6 5.5 47 151-197 169-215 (854)
116 3j16_B RLI1P; ribosome recycli 97.4 8.1E-05 2.8E-09 64.4 3.9 29 174-202 379-407 (608)
117 3gd7_A Fusion complex of cysti 97.4 7E-05 2.4E-09 61.4 3.2 37 160-198 36-72 (390)
118 1p9r_A General secretion pathw 97.4 0.00022 7.7E-09 58.9 6.2 29 174-202 168-196 (418)
119 3d8b_A Fidgetin-like protein 1 97.4 0.00023 8E-09 57.6 6.2 46 152-197 84-141 (357)
120 1lw7_A Transcriptional regulat 97.4 9.5E-05 3.2E-09 60.0 3.7 27 174-200 171-197 (365)
121 2rcn_A Probable GTPase ENGC; Y 97.4 0.00017 5.7E-09 58.5 5.0 31 170-202 214-245 (358)
122 3pxi_A Negative regulator of g 97.4 0.00022 7.4E-09 63.4 6.2 47 151-197 179-225 (758)
123 3u61_B DNA polymerase accessor 97.4 0.00027 9.4E-09 56.1 6.3 47 151-197 25-72 (324)
124 2yv5_A YJEQ protein; hydrolase 97.4 0.00021 7E-09 56.6 5.2 27 175-202 167-193 (302)
125 1r6b_X CLPA protein; AAA+, N-t 97.4 0.0003 1E-08 62.4 6.7 47 151-197 185-231 (758)
126 1svm_A Large T antigen; AAA+ f 97.4 0.00019 6.5E-09 58.6 5.0 35 161-197 159-193 (377)
127 1xwi_A SKD1 protein; VPS4B, AA 97.4 0.00028 9.5E-09 56.3 5.9 46 152-197 12-69 (322)
128 2r44_A Uncharacterized protein 97.4 0.00017 5.7E-09 57.5 4.6 43 153-197 28-70 (331)
129 2hf9_A Probable hydrogenase ni 97.4 0.00027 9.4E-09 52.9 5.5 37 161-197 26-62 (226)
130 1oix_A RAS-related protein RAB 97.3 0.00012 4E-09 53.7 3.3 26 173-198 29-54 (191)
131 2yl4_A ATP-binding cassette SU 97.3 4.6E-05 1.6E-09 65.9 1.2 40 161-202 360-399 (595)
132 2wsm_A Hydrogenase expression/ 97.3 0.00021 7E-09 53.4 4.7 41 157-197 14-54 (221)
133 3uk6_A RUVB-like 2; hexameric 97.3 0.00034 1.2E-08 56.4 6.2 47 152-198 44-95 (368)
134 3eie_A Vacuolar protein sortin 97.3 0.00035 1.2E-08 55.6 5.9 46 152-197 18-75 (322)
135 1ixz_A ATP-dependent metallopr 97.3 0.00013 4.5E-09 55.9 3.3 23 176-198 52-74 (254)
136 3jvv_A Twitching mobility prot 97.3 0.00015 5E-09 58.8 3.7 25 175-199 125-149 (356)
137 3co5_A Putative two-component 97.3 8E-05 2.7E-09 52.2 1.8 44 153-196 5-50 (143)
138 4a82_A Cystic fibrosis transme 97.3 4.9E-05 1.7E-09 65.5 0.8 40 161-202 357-396 (578)
139 1tf7_A KAIC; homohexamer, hexa 97.3 9.5E-05 3.2E-09 63.0 2.6 39 158-198 25-66 (525)
140 3qf4_B Uncharacterized ABC tra 97.3 6.4E-05 2.2E-09 65.1 1.4 50 151-202 360-410 (598)
141 2iw3_A Elongation factor 3A; a 97.3 2.9E-05 1E-09 70.3 -1.0 42 152-195 442-483 (986)
142 2bjv_A PSP operon transcriptio 97.3 0.0003 1E-08 54.2 4.9 45 153-197 7-53 (265)
143 3nbx_X ATPase RAVA; AAA+ ATPas 97.2 0.00031 1E-08 59.5 5.2 43 153-197 23-65 (500)
144 2px0_A Flagellar biosynthesis 97.2 0.00016 5.4E-09 57.1 3.2 27 173-199 105-131 (296)
145 1u0l_A Probable GTPase ENGC; p 97.2 0.00015 5.1E-09 57.4 3.0 28 175-202 171-198 (301)
146 1iy2_A ATP-dependent metallopr 97.2 0.00019 6.5E-09 55.9 3.3 23 176-198 76-98 (278)
147 3qf4_A ABC transporter, ATP-bi 97.2 8.6E-05 2.9E-09 64.1 1.3 40 161-202 359-398 (587)
148 2iw3_A Elongation factor 3A; a 97.2 7.8E-05 2.7E-09 67.6 1.0 39 162-202 690-728 (986)
149 2p5t_B PEZT; postsegregational 97.2 0.00035 1.2E-08 53.7 4.6 25 173-197 32-56 (253)
150 1gvn_B Zeta; postsegregational 97.2 0.00049 1.7E-08 54.0 5.5 25 173-197 33-57 (287)
151 1d2n_A N-ethylmaleimide-sensit 97.2 0.00072 2.4E-08 52.3 6.4 27 171-197 62-88 (272)
152 3vfd_A Spastin; ATPase, microt 97.2 0.00061 2.1E-08 55.7 6.2 46 152-197 115-172 (389)
153 1vma_A Cell division protein F 97.2 0.00028 9.7E-09 55.9 4.0 28 173-200 104-131 (306)
154 2r62_A Cell division protease 97.2 0.00026 8.8E-09 54.6 3.7 47 152-198 11-69 (268)
155 2ewv_A Twitching motility prot 97.2 0.00016 5.6E-09 58.9 2.7 26 174-199 137-162 (372)
156 3hws_A ATP-dependent CLP prote 97.2 0.00053 1.8E-08 55.4 5.6 44 154-197 17-75 (363)
157 4b4t_M 26S protease regulatory 97.1 0.00078 2.7E-08 55.9 6.4 47 152-198 181-240 (434)
158 2qp9_X Vacuolar protein sortin 97.1 0.00053 1.8E-08 55.4 5.4 46 152-197 51-108 (355)
159 2zan_A Vacuolar protein sortin 97.1 0.00068 2.3E-08 56.5 6.0 46 152-197 134-191 (444)
160 1l8q_A Chromosomal replication 97.1 0.00094 3.2E-08 53.0 6.6 38 160-197 22-61 (324)
161 4b4t_K 26S protease regulatory 97.1 0.00088 3E-08 55.5 6.5 47 152-198 172-231 (428)
162 4b4t_L 26S protease subunit RP 97.1 0.00097 3.3E-08 55.4 6.5 47 152-198 181-240 (437)
163 1qhl_A Protein (cell division 97.1 6.2E-05 2.1E-09 57.2 -0.8 28 175-202 29-56 (227)
164 1t9h_A YLOQ, probable GTPase E 97.1 0.00011 3.9E-09 58.2 0.6 26 175-200 175-200 (307)
165 3umf_A Adenylate kinase; rossm 97.0 0.00063 2.2E-08 51.2 4.2 27 172-198 28-54 (217)
166 1nlf_A Regulatory protein REPA 97.0 0.0004 1.4E-08 54.1 3.2 29 168-198 27-55 (279)
167 1um8_A ATP-dependent CLP prote 97.0 0.0011 3.8E-08 53.8 5.9 24 174-197 73-96 (376)
168 3tlx_A Adenylate kinase 2; str 97.0 0.0013 4.6E-08 50.1 6.0 26 172-197 28-53 (243)
169 4b4t_J 26S protease regulatory 97.0 0.0012 4E-08 54.2 5.8 47 152-198 148-207 (405)
170 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00059 2E-08 48.2 3.5 22 174-195 24-45 (149)
171 3t15_A Ribulose bisphosphate c 96.9 0.00055 1.9E-08 53.8 3.6 25 173-197 36-60 (293)
172 4b4t_H 26S protease regulatory 96.9 0.0015 5.2E-08 54.4 6.3 47 152-198 209-268 (467)
173 2z4s_A Chromosomal replication 96.9 0.0011 3.9E-08 55.1 5.6 37 161-197 117-154 (440)
174 3szr_A Interferon-induced GTP- 96.9 0.00028 9.4E-09 61.2 1.9 28 172-199 44-71 (608)
175 3m6a_A ATP-dependent protease 96.9 0.0014 4.8E-08 56.0 6.3 46 153-198 82-133 (543)
176 1zu4_A FTSY; GTPase, signal re 96.9 0.00068 2.3E-08 54.1 4.0 27 173-199 105-131 (320)
177 1g8p_A Magnesium-chelatase 38 96.9 0.00046 1.6E-08 55.2 3.0 47 152-198 24-70 (350)
178 2ce7_A Cell division protein F 96.9 0.0013 4.5E-08 55.2 5.7 46 152-197 16-73 (476)
179 1ls1_A Signal recognition part 96.9 0.00068 2.3E-08 53.4 3.8 27 173-199 98-124 (295)
180 3cr8_A Sulfate adenylyltranfer 96.9 0.00047 1.6E-08 59.0 3.0 27 174-200 370-396 (552)
181 2c9o_A RUVB-like 1; hexameric 96.9 0.0017 5.6E-08 54.3 6.2 47 152-198 37-88 (456)
182 1ypw_A Transitional endoplasmi 96.9 0.00072 2.5E-08 60.5 4.1 46 152-197 204-262 (806)
183 2dhr_A FTSH; AAA+ protein, hex 96.9 0.0018 6E-08 54.8 6.2 46 152-197 31-88 (499)
184 2f6r_A COA synthase, bifunctio 96.8 0.00071 2.4E-08 52.9 3.5 23 172-194 74-96 (281)
185 4b4t_I 26S protease regulatory 96.8 0.0021 7.2E-08 53.1 6.4 47 152-198 182-241 (437)
186 2qag_C Septin-7; cell cycle, c 96.8 0.00051 1.8E-08 56.8 2.8 24 175-198 33-56 (418)
187 2ged_A SR-beta, signal recogni 96.8 0.0019 6.4E-08 46.9 5.5 26 172-197 47-72 (193)
188 1g41_A Heat shock protein HSLU 96.8 0.0013 4.4E-08 54.7 5.0 47 152-198 15-75 (444)
189 3g5u_A MCG1178, multidrug resi 96.8 0.00042 1.4E-08 65.0 2.3 41 160-202 1048-1088(1284)
190 2p67_A LAO/AO transport system 96.8 0.00072 2.5E-08 54.3 3.4 27 171-197 54-80 (341)
191 1mky_A Probable GTP-binding pr 96.8 0.0016 5.5E-08 54.1 5.5 43 155-197 151-204 (439)
192 2www_A Methylmalonic aciduria 96.8 0.001 3.4E-08 53.7 4.0 25 173-197 74-98 (349)
193 3p32_A Probable GTPase RV1496/ 96.8 0.0028 9.5E-08 51.2 6.5 37 161-197 65-103 (355)
194 3kl4_A SRP54, signal recogniti 96.7 0.0018 6.2E-08 53.7 5.2 26 173-198 97-122 (433)
195 2qgz_A Helicase loader, putati 96.7 0.0021 7E-08 50.9 5.4 41 158-198 134-177 (308)
196 1pzn_A RAD51, DNA repair and r 96.7 0.00092 3.2E-08 53.9 3.4 26 170-197 130-155 (349)
197 3hu3_A Transitional endoplasmi 96.7 0.0024 8.3E-08 53.8 5.9 46 152-197 204-262 (489)
198 4gzl_A RAS-related C3 botulinu 96.7 0.0011 3.6E-08 49.0 3.3 40 158-197 15-54 (204)
199 3g5u_A MCG1178, multidrug resi 96.7 0.0005 1.7E-08 64.5 1.8 40 161-202 406-445 (1284)
200 3dm5_A SRP54, signal recogniti 96.7 0.0032 1.1E-07 52.3 6.3 26 173-198 100-125 (443)
201 3lxx_A GTPase IMAP family memb 96.6 0.0012 4E-08 50.1 3.3 27 172-198 28-54 (239)
202 1tue_A Replication protein E1; 96.6 0.0029 1E-07 47.1 5.2 37 161-197 45-82 (212)
203 4f4c_A Multidrug resistance pr 96.6 0.00057 1.9E-08 64.3 1.5 42 160-203 1094-1135(1321)
204 3ux8_A Excinuclease ABC, A sub 96.5 0.0011 3.7E-08 58.2 2.8 28 161-190 34-61 (670)
205 3a8t_A Adenylate isopentenyltr 96.5 0.0015 5.1E-08 52.3 3.3 24 174-197 41-64 (339)
206 3fwy_A Light-independent proto 96.5 0.0018 6.1E-08 51.5 3.6 25 171-195 46-70 (314)
207 3zvl_A Bifunctional polynucleo 96.5 0.0019 6.4E-08 53.4 3.8 27 171-197 256-282 (416)
208 4f4c_A Multidrug resistance pr 96.5 0.00097 3.3E-08 62.7 2.2 40 161-202 434-473 (1321)
209 3ux8_A Excinuclease ABC, A sub 96.4 0.00089 3E-08 58.7 1.7 25 168-194 345-369 (670)
210 3hr8_A Protein RECA; alpha and 96.4 0.006 2.1E-07 49.3 6.4 24 175-198 63-86 (356)
211 3lda_A DNA repair protein RAD5 96.4 0.0018 6E-08 53.3 3.2 25 168-194 175-199 (400)
212 2ffh_A Protein (FFH); SRP54, s 96.4 0.0025 8.7E-08 52.7 4.2 28 173-200 98-125 (425)
213 1j8m_F SRP54, signal recogniti 96.4 0.0014 4.8E-08 51.7 2.5 26 173-198 98-123 (297)
214 2b6h_A ADP-ribosylation factor 96.4 0.0018 6.2E-08 47.2 2.9 29 168-196 24-52 (192)
215 2atv_A RERG, RAS-like estrogen 96.4 0.0026 8.9E-08 46.4 3.7 26 172-197 27-52 (196)
216 4aby_A DNA repair protein RECN 96.4 0.00061 2.1E-08 56.0 0.3 23 175-197 62-84 (415)
217 1tf7_A KAIC; homohexamer, hexa 96.4 0.0024 8.2E-08 54.3 3.8 30 169-200 279-308 (525)
218 1ewq_A DNA mismatch repair pro 96.3 0.0021 7.2E-08 57.1 3.5 24 174-197 577-600 (765)
219 1gwn_A RHO-related GTP-binding 96.3 0.0022 7.5E-08 47.4 3.1 25 173-197 28-52 (205)
220 2qu8_A Putative nucleolar GTP- 96.3 0.0027 9.2E-08 47.6 3.5 25 172-196 28-52 (228)
221 1wb9_A DNA mismatch repair pro 96.3 0.0023 7.8E-08 57.2 3.5 23 174-196 608-630 (800)
222 2qtf_A Protein HFLX, GTP-bindi 96.3 0.0021 7.3E-08 52.1 3.0 26 172-197 178-203 (364)
223 2p5s_A RAS and EF-hand domain 96.3 0.0026 9E-08 46.5 3.2 27 171-197 26-52 (199)
224 3upu_A ATP-dependent DNA helic 96.3 0.0073 2.5E-07 50.4 6.3 42 156-198 29-70 (459)
225 3pxi_A Negative regulator of g 96.3 0.0074 2.5E-07 53.6 6.6 46 152-197 491-545 (758)
226 2j37_W Signal recognition part 96.3 0.0059 2E-07 51.6 5.6 24 173-196 101-124 (504)
227 2qag_A Septin-2, protein NEDD5 96.3 0.0018 6.1E-08 52.5 2.4 26 171-196 35-60 (361)
228 2v3c_C SRP54, signal recogniti 96.2 0.0019 6.6E-08 53.6 2.5 25 173-197 99-123 (432)
229 2j1l_A RHO-related GTP-binding 96.2 0.0027 9.2E-08 47.1 3.0 24 173-196 34-57 (214)
230 2zr9_A Protein RECA, recombina 96.2 0.003 1E-07 50.9 3.3 36 160-197 48-85 (349)
231 2r6a_A DNAB helicase, replicat 96.1 0.0046 1.6E-07 51.6 4.3 37 160-198 192-228 (454)
232 2g3y_A GTP-binding protein GEM 96.1 0.0034 1.1E-07 46.9 3.2 23 173-195 37-59 (211)
233 3ice_A Transcription terminati 96.1 0.0034 1.2E-07 51.3 3.4 26 170-197 173-198 (422)
234 3end_A Light-independent proto 96.1 0.0039 1.3E-07 49.0 3.7 29 169-197 37-65 (307)
235 2hup_A RAS-related protein RAB 96.1 0.0034 1.2E-07 46.1 3.1 25 173-197 29-53 (201)
236 2vhj_A Ntpase P4, P4; non- hyd 96.1 0.0041 1.4E-07 49.5 3.7 22 175-196 125-146 (331)
237 2xxa_A Signal recognition part 96.1 0.0046 1.6E-07 51.4 4.1 26 172-197 99-124 (433)
238 3def_A T7I23.11 protein; chlor 96.1 0.0077 2.7E-07 46.3 5.0 26 172-197 35-60 (262)
239 3q3j_B RHO-related GTP-binding 96.0 0.0044 1.5E-07 46.0 3.4 23 174-196 28-50 (214)
240 1qvr_A CLPB protein; coiled co 96.0 0.0052 1.8E-07 55.3 4.5 45 153-197 559-612 (854)
241 3th5_A RAS-related C3 botulinu 95.0 0.0011 3.7E-08 48.8 0.0 29 168-196 25-53 (204)
242 4dhe_A Probable GTP-binding pr 96.0 0.0021 7.3E-08 47.8 1.6 26 172-197 28-53 (223)
243 1udx_A The GTP-binding protein 96.0 0.0018 6.3E-08 53.4 1.2 23 174-196 158-180 (416)
244 1h65_A Chloroplast outer envel 96.0 0.0089 3E-07 46.1 5.0 25 173-197 39-63 (270)
245 3lv8_A DTMP kinase, thymidylat 96.0 0.0051 1.7E-07 46.8 3.5 23 175-197 29-51 (236)
246 2e87_A Hypothetical protein PH 95.9 0.004 1.4E-07 50.3 3.0 26 172-197 166-191 (357)
247 3f9v_A Minichromosome maintena 95.9 0.003 1E-07 54.6 2.4 44 154-197 297-351 (595)
248 3llm_A ATP-dependent RNA helic 95.9 0.0085 2.9E-07 45.2 4.6 32 161-194 66-97 (235)
249 3cf2_A TER ATPase, transitiona 95.9 0.0099 3.4E-07 53.0 5.6 26 173-198 238-263 (806)
250 1r6b_X CLPA protein; AAA+, N-t 95.9 0.013 4.4E-07 52.0 6.2 46 152-197 458-512 (758)
251 3cnl_A YLQF, putative uncharac 95.9 0.0082 2.8E-07 46.4 4.3 35 162-197 89-123 (262)
252 1puj_A YLQF, conserved hypothe 95.8 0.013 4.3E-07 45.8 5.4 25 173-197 120-144 (282)
253 3bh0_A DNAB-like replicative h 95.8 0.0079 2.7E-07 47.7 4.3 36 160-197 57-92 (315)
254 2axn_A 6-phosphofructo-2-kinas 95.8 0.0062 2.1E-07 51.8 3.8 25 173-197 35-59 (520)
255 3thx_B DNA mismatch repair pro 95.8 0.0037 1.2E-07 56.6 2.5 22 174-195 674-695 (918)
256 1g8f_A Sulfate adenylyltransfe 95.8 0.013 4.4E-07 49.6 5.6 27 172-198 394-420 (511)
257 3thx_A DNA mismatch repair pro 95.8 0.005 1.7E-07 55.8 3.3 20 174-193 663-682 (934)
258 2hjg_A GTP-binding protein ENG 95.8 0.013 4.5E-07 48.5 5.6 43 155-197 150-199 (436)
259 1bif_A 6-phosphofructo-2-kinas 95.8 0.0064 2.2E-07 50.9 3.7 26 172-197 38-63 (469)
260 2qmh_A HPR kinase/phosphorylas 95.7 0.006 2E-07 45.2 3.0 23 174-196 35-57 (205)
261 1ypw_A Transitional endoplasmi 95.7 0.0039 1.3E-07 55.8 2.3 47 152-198 477-536 (806)
262 1sky_E F1-ATPase, F1-ATP synth 95.7 0.011 3.8E-07 49.4 4.7 26 170-197 150-175 (473)
263 3t34_A Dynamin-related protein 95.7 0.0069 2.4E-07 48.8 3.4 25 172-196 33-57 (360)
264 2o8b_B DNA mismatch repair pro 95.6 0.0068 2.3E-07 55.5 3.4 22 174-196 790-811 (1022)
265 1u0j_A DNA replication protein 95.4 0.029 9.9E-07 43.4 5.9 35 162-196 91-127 (267)
266 2z43_A DNA repair and recombin 95.4 0.011 3.7E-07 47.0 3.5 27 168-196 104-130 (324)
267 2vf7_A UVRA2, excinuclease ABC 95.3 0.0032 1.1E-07 56.4 0.3 23 171-195 523-546 (842)
268 1x6v_B Bifunctional 3'-phospho 95.3 0.012 4.1E-07 51.0 3.8 26 172-197 51-76 (630)
269 4a1f_A DNAB helicase, replicat 95.3 0.015 5E-07 46.7 4.0 36 160-197 35-70 (338)
270 2ygr_A Uvrabc system protein A 95.3 0.0057 2E-07 55.5 1.7 21 171-193 668-688 (993)
271 2q6t_A DNAB replication FORK h 95.1 0.016 5.4E-07 48.2 3.9 36 160-197 189-224 (444)
272 1m8p_A Sulfate adenylyltransfe 95.1 0.014 4.7E-07 50.2 3.6 25 173-197 396-420 (573)
273 3ec1_A YQEH GTPase; atnos1, at 95.1 0.034 1.2E-06 45.0 5.6 40 154-196 146-185 (369)
274 1v5w_A DMC1, meiotic recombina 95.0 0.017 5.9E-07 46.3 3.8 22 175-196 124-145 (343)
275 3q5d_A Atlastin-1; G protein, 95.0 0.018 6E-07 48.0 3.9 37 160-196 52-90 (447)
276 1zcb_A G alpha I/13; GTP-bindi 95.0 0.018 6E-07 46.7 3.7 22 172-193 32-53 (362)
277 2r6f_A Excinuclease ABC subuni 95.0 0.0057 2E-07 55.4 0.9 21 171-193 650-670 (972)
278 2gks_A Bifunctional SAT/APS ki 94.9 0.037 1.3E-06 47.3 5.5 26 172-197 371-396 (546)
279 1u94_A RECA protein, recombina 94.9 0.019 6.5E-07 46.4 3.6 35 160-196 50-86 (356)
280 3l0o_A Transcription terminati 94.8 0.03 1E-06 45.8 4.6 33 163-197 164-199 (427)
281 1f5n_A Interferon-induced guan 94.8 0.02 6.9E-07 49.3 3.7 28 170-197 35-62 (592)
282 3e1s_A Exodeoxyribonuclease V, 94.8 0.034 1.2E-06 47.8 5.1 32 164-197 197-228 (574)
283 3o47_A ADP-ribosylation factor 94.8 0.011 3.8E-07 47.1 1.9 23 174-196 166-188 (329)
284 3bgw_A DNAB-like replicative h 94.7 0.025 8.6E-07 47.0 4.0 36 160-197 186-221 (444)
285 2wkq_A NPH1-1, RAS-related C3 94.7 0.041 1.4E-06 43.2 5.1 27 171-197 153-179 (332)
286 3dpu_A RAB family protein; roc 94.6 0.019 6.6E-07 48.8 3.1 24 174-197 42-65 (535)
287 3h2y_A GTPase family protein; 94.6 0.046 1.6E-06 44.3 5.2 41 154-197 144-184 (368)
288 4ag6_A VIRB4 ATPase, type IV s 94.6 0.027 9.2E-07 45.8 3.8 24 175-198 37-60 (392)
289 3cf2_A TER ATPase, transitiona 94.5 0.05 1.7E-06 48.6 5.6 47 152-198 477-536 (806)
290 2i1q_A DNA repair and recombin 94.5 0.024 8.3E-07 44.8 3.3 22 175-196 100-121 (322)
291 2zts_A Putative uncharacterize 94.3 0.03 1E-06 42.1 3.4 24 169-194 28-51 (251)
292 3geh_A MNME, tRNA modification 94.3 0.028 9.6E-07 47.0 3.4 23 175-197 226-248 (462)
293 2qpt_A EH domain-containing pr 94.3 0.025 8.7E-07 48.3 3.2 25 173-197 65-89 (550)
294 3l0i_B RAS-related protein RAB 94.3 0.0029 9.9E-08 46.3 -2.3 23 173-195 33-55 (199)
295 1xp8_A RECA protein, recombina 94.2 0.029 9.9E-07 45.5 3.3 35 160-196 61-97 (366)
296 2x2e_A Dynamin-1; nitration, h 94.2 0.018 6.2E-07 46.3 2.0 26 172-197 30-55 (353)
297 1of1_A Thymidine kinase; trans 94.2 0.026 8.7E-07 45.9 2.8 25 173-197 49-73 (376)
298 3vkw_A Replicase large subunit 94.0 0.041 1.4E-06 45.7 3.8 44 152-195 135-183 (446)
299 3fkq_A NTRC-like two-domain pr 93.9 0.045 1.5E-06 44.3 3.8 26 171-196 141-167 (373)
300 4dcu_A GTP-binding protein ENG 93.8 0.076 2.6E-06 44.2 5.0 42 155-196 170-218 (456)
301 2ck3_D ATP synthase subunit be 93.7 0.069 2.4E-06 44.7 4.7 26 170-197 152-177 (482)
302 3pih_A Uvrabc system protein A 93.7 0.03 1E-06 50.7 2.7 17 175-191 612-628 (916)
303 1lnz_A SPO0B-associated GTP-bi 93.7 0.029 9.8E-07 45.0 2.2 23 174-196 159-181 (342)
304 2xau_A PRE-mRNA-splicing facto 93.6 0.077 2.6E-06 47.3 5.0 34 161-196 99-132 (773)
305 2oze_A ORF delta'; para, walke 93.6 0.036 1.2E-06 43.1 2.6 25 173-197 34-61 (298)
306 3io5_A Recombination and repai 93.5 0.045 1.5E-06 43.5 3.1 21 175-195 30-50 (333)
307 2j69_A Bacterial dynamin-like 93.5 0.073 2.5E-06 46.8 4.6 25 173-197 69-93 (695)
308 4ad8_A DNA repair protein RECN 93.4 0.016 5.4E-07 49.2 0.3 23 174-196 61-83 (517)
309 3cio_A ETK, tyrosine-protein k 93.3 0.12 4E-06 40.6 5.2 29 169-197 100-129 (299)
310 3bfv_A CAPA1, CAPB2, membrane 93.3 0.12 4.1E-06 39.9 5.1 28 170-197 79-107 (271)
311 3lvq_E ARF-GAP with SH3 domain 93.2 0.057 2E-06 45.3 3.4 24 174-197 323-346 (497)
312 3gee_A MNME, tRNA modification 93.2 0.035 1.2E-06 46.6 2.1 22 175-196 235-256 (476)
313 4ido_A Atlastin-1; GTPase, GTP 93.2 0.069 2.4E-06 44.4 3.8 38 158-195 50-89 (457)
314 1q57_A DNA primase/helicase; d 93.1 0.045 1.6E-06 46.1 2.6 35 161-197 232-266 (503)
315 4a9a_A Ribosome-interacting GT 93.0 0.047 1.6E-06 44.4 2.6 26 172-197 71-96 (376)
316 1ko7_A HPR kinase/phosphatase; 92.9 0.063 2.2E-06 42.5 3.0 21 175-195 146-166 (314)
317 1w36_D RECD, exodeoxyribonucle 92.9 0.11 3.9E-06 44.9 4.9 23 174-196 165-187 (608)
318 3vr4_A V-type sodium ATPase ca 92.4 0.15 5.1E-06 43.6 4.8 26 170-197 231-256 (600)
319 3ez2_A Plasmid partition prote 92.4 0.086 2.9E-06 42.9 3.3 26 171-196 106-132 (398)
320 3la6_A Tyrosine-protein kinase 92.3 0.19 6.5E-06 39.1 5.1 37 161-197 80-117 (286)
321 4b3f_X DNA-binding protein smu 92.1 0.18 6.3E-06 43.8 5.3 33 161-195 195-228 (646)
322 3gqb_A V-type ATP synthase alp 91.9 0.14 4.9E-06 43.5 4.2 25 171-197 221-245 (578)
323 2gk6_A Regulator of nonsense t 91.9 0.22 7.6E-06 43.1 5.5 22 175-196 197-218 (624)
324 1fx0_B ATP synthase beta chain 91.8 0.091 3.1E-06 44.1 2.9 26 170-197 164-189 (498)
325 2c61_A A-type ATP synthase non 91.8 0.095 3.2E-06 43.8 2.9 27 171-199 152-178 (469)
326 3izq_1 HBS1P, elongation facto 91.8 0.092 3.1E-06 45.5 2.9 25 172-196 166-190 (611)
327 3mca_A HBS1, elongation factor 91.8 0.13 4.4E-06 44.4 3.8 24 172-195 176-199 (592)
328 3mfy_A V-type ATP synthase alp 91.7 0.12 4.1E-06 44.1 3.4 25 170-196 226-250 (588)
329 3k9g_A PF-32 protein; ssgcid, 91.5 0.13 4.3E-06 39.3 3.2 26 171-196 25-51 (267)
330 3p26_A Elongation factor 1 alp 91.5 0.098 3.4E-06 43.9 2.7 26 171-196 31-56 (483)
331 3vr4_D V-type sodium ATPase su 91.3 0.12 4E-06 43.1 2.9 27 171-199 151-177 (465)
332 1xzp_A Probable tRNA modificat 91.2 0.039 1.3E-06 46.4 -0.0 23 175-197 245-267 (482)
333 3gqb_B V-type ATP synthase bet 91.2 0.1 3.4E-06 43.5 2.4 26 171-198 147-172 (464)
334 1ny5_A Transcriptional regulat 91.1 0.34 1.2E-05 39.4 5.5 43 154-197 139-184 (387)
335 1r5b_A Eukaryotic peptide chai 90.9 0.079 2.7E-06 44.3 1.6 26 170-195 40-65 (467)
336 3ez9_A Para; DNA binding, wing 90.8 0.083 2.8E-06 43.1 1.6 26 171-196 109-135 (403)
337 1knx_A Probable HPR(Ser) kinas 90.6 0.14 4.8E-06 40.4 2.7 21 175-195 149-169 (312)
338 2wjy_A Regulator of nonsense t 90.4 0.32 1.1E-05 43.5 5.1 22 175-196 373-394 (800)
339 2ck3_A ATP synthase subunit al 90.2 0.26 9E-06 41.5 4.1 27 170-198 161-188 (510)
340 3cmw_A Protein RECA, recombina 90.1 0.19 6.4E-06 48.4 3.5 28 168-197 729-756 (1706)
341 3czq_A Putative polyphosphate 90.0 0.55 1.9E-05 36.9 5.6 30 171-200 84-113 (304)
342 3qq5_A Small GTP-binding prote 89.9 0.035 1.2E-06 45.9 -1.4 26 171-196 32-57 (423)
343 2r9v_A ATP synthase subunit al 89.8 0.23 7.9E-06 41.8 3.5 26 170-197 174-200 (515)
344 2qe7_A ATP synthase subunit al 89.6 0.24 8.2E-06 41.7 3.4 25 171-197 162-187 (502)
345 3cmw_A Protein RECA, recombina 89.6 0.22 7.5E-06 48.0 3.6 24 174-197 1083-1106(1706)
346 2ius_A DNA translocase FTSK; n 89.6 0.2 6.9E-06 42.3 3.0 21 175-195 169-189 (512)
347 1e9r_A Conjugal transfer prote 89.3 0.24 8.3E-06 40.7 3.3 23 174-196 54-76 (437)
348 3cmu_A Protein RECA, recombina 89.3 0.24 8.4E-06 48.4 3.6 23 175-197 1429-1451(2050)
349 2xzl_A ATP-dependent helicase 89.2 0.44 1.5E-05 42.6 5.1 29 164-194 368-396 (802)
350 3vqt_A RF-3, peptide chain rel 89.0 0.26 9E-06 42.0 3.3 23 172-194 30-52 (548)
351 3dzd_A Transcriptional regulat 88.9 0.63 2.1E-05 37.5 5.4 44 154-198 131-177 (368)
352 3e2i_A Thymidine kinase; Zn-bi 88.3 0.39 1.3E-05 35.9 3.5 23 175-197 30-53 (219)
353 1cip_A Protein (guanine nucleo 88.2 0.32 1.1E-05 39.1 3.2 21 173-193 32-52 (353)
354 3oaa_A ATP synthase subunit al 88.1 0.42 1.4E-05 40.2 3.8 25 170-196 161-186 (513)
355 3zvr_A Dynamin-1; hydrolase, D 87.5 0.63 2.1E-05 41.3 4.8 26 172-197 50-75 (772)
356 3cmu_A Protein RECA, recombina 87.3 0.45 1.5E-05 46.6 4.0 37 160-198 719-757 (2050)
357 1ihu_A Arsenical pump-driving 86.9 0.82 2.8E-05 39.2 5.2 35 162-196 316-350 (589)
358 2olr_A Phosphoenolpyruvate car 86.6 0.36 1.2E-05 40.9 2.7 18 174-191 242-259 (540)
359 1j3b_A ATP-dependent phosphoen 86.6 0.28 9.7E-06 41.5 2.0 19 174-192 226-244 (529)
360 1ytm_A Phosphoenolpyruvate car 86.4 0.38 1.3E-05 40.7 2.7 18 174-191 236-253 (532)
361 1fx0_A ATP synthase alpha chai 86.3 0.29 9.8E-06 41.2 1.9 25 171-197 163-188 (507)
362 4akg_A Glutathione S-transfera 86.3 0.6 2E-05 47.1 4.4 22 175-196 1269-1290(2695)
363 1ii2_A Phosphoenolpyruvate car 86.2 0.4 1.4E-05 40.6 2.7 18 174-191 214-231 (524)
364 2vf7_A UVRA2, excinuclease ABC 86.1 0.38 1.3E-05 43.2 2.6 20 170-191 35-54 (842)
365 2fz4_A DNA repair protein RAD2 85.6 1.1 3.7E-05 33.6 4.8 30 165-196 102-131 (237)
366 1azs_C GS-alpha; complex (lyas 85.3 0.53 1.8E-05 38.5 3.0 21 173-193 40-60 (402)
367 3avx_A Elongation factor TS, e 84.7 0.62 2.1E-05 43.4 3.4 25 172-196 295-319 (1289)
368 3c5h_A Glucocorticoid receptor 83.8 0.49 1.7E-05 35.9 2.1 18 178-195 33-50 (255)
369 4akg_A Glutathione S-transfera 83.5 1.1 3.8E-05 45.2 4.8 23 174-196 924-946 (2695)
370 2j9r_A Thymidine kinase; TK1, 83.3 1.1 3.8E-05 33.3 3.8 23 174-196 29-51 (214)
371 2r6f_A Excinuclease ABC subuni 83.0 0.57 2E-05 42.6 2.5 18 174-191 45-62 (972)
372 2ygr_A Uvrabc system protein A 82.9 0.58 2E-05 42.7 2.5 18 174-191 47-64 (993)
373 3b6e_A Interferon-induced heli 82.6 0.78 2.7E-05 33.2 2.7 21 175-195 50-70 (216)
374 1g5t_A COB(I)alamin adenosyltr 82.2 0.68 2.3E-05 33.9 2.2 19 175-193 30-48 (196)
375 3f8t_A Predicted ATPase involv 80.7 1.2 4.1E-05 37.4 3.4 39 154-193 215-258 (506)
376 2gxq_A Heat resistant RNA depe 80.2 1.6 5.6E-05 31.3 3.8 24 166-191 33-56 (207)
377 2iut_A DNA translocase FTSK; n 79.8 1.2 4E-05 38.2 3.1 22 175-196 216-237 (574)
378 3czp_A Putative polyphosphate 79.4 2.9 9.8E-05 35.2 5.4 40 161-200 29-70 (500)
379 2k48_A Nucleoprotein; viral pr 78.6 11 0.00037 24.3 8.1 69 23-91 22-95 (107)
380 2lw1_A ABC transporter ATP-bin 76.6 11 0.00038 23.5 6.9 62 30-92 20-81 (89)
381 2pl3_A Probable ATP-dependent 75.4 2.7 9.2E-05 31.0 3.8 24 165-190 56-79 (236)
382 2z0m_A 337AA long hypothetical 75.3 3.3 0.00011 31.9 4.4 28 164-193 24-51 (337)
383 3rhf_A Putative polyphosphate 75.0 2.6 9E-05 32.7 3.6 28 173-200 75-102 (289)
384 1qde_A EIF4A, translation init 74.3 3 0.0001 30.4 3.8 21 167-189 47-67 (224)
385 3czp_A Putative polyphosphate 73.8 3.5 0.00012 34.7 4.4 29 172-200 299-327 (500)
386 2va8_A SSO2462, SKI2-type heli 73.0 3.2 0.00011 36.3 4.2 23 168-192 43-65 (715)
387 4fi5_A Nucleoprotein; structur 73.0 17 0.00057 23.7 7.7 59 33-91 23-82 (113)
388 1vec_A ATP-dependent RNA helic 72.7 2.8 9.5E-05 30.1 3.2 25 165-191 34-58 (206)
389 1lkx_A Myosin IE heavy chain; 70.7 4.5 0.00015 35.5 4.5 29 169-197 90-118 (697)
390 3iuy_A Probable ATP-dependent 70.1 4.9 0.00017 29.3 4.1 23 167-191 53-75 (228)
391 1t6n_A Probable ATP-dependent 69.8 5.8 0.0002 28.7 4.4 18 175-192 53-70 (220)
392 3ber_A Probable ATP-dependent 69.6 4.4 0.00015 30.3 3.8 24 165-190 74-97 (249)
393 3vkg_A Dynein heavy chain, cyt 69.4 2.8 9.5E-05 43.1 3.2 25 173-197 906-930 (3245)
394 3pey_A ATP-dependent RNA helic 69.3 5.5 0.00019 31.4 4.5 28 164-191 35-62 (395)
395 3a7p_A Autophagy protein 16; c 69.3 20 0.00068 24.9 6.6 18 67-84 128-145 (152)
396 3vkg_A Dynein heavy chain, cyt 69.3 3.2 0.00011 42.7 3.5 22 175-196 1306-1327(3245)
397 2p6r_A Afuhel308 helicase; pro 68.9 2.3 7.8E-05 37.2 2.3 23 168-192 37-59 (702)
398 1w9i_A Myosin II heavy chain; 68.7 5.2 0.00018 35.5 4.5 29 169-197 168-196 (770)
399 3rc3_A ATP-dependent RNA helic 68.7 2.9 9.8E-05 36.6 2.8 18 174-191 156-173 (677)
400 1hv8_A Putative ATP-dependent 68.3 6.1 0.00021 30.8 4.5 18 175-192 46-63 (367)
401 4db1_A Myosin-7; S1DC, cardiac 67.8 5.5 0.00019 35.5 4.4 28 170-197 168-195 (783)
402 3mtu_A Tropomyosin alpha-1 cha 67.1 5.2 0.00018 24.3 3.0 46 32-84 16-68 (75)
403 2v26_A Myosin VI; calmodulin-b 67.0 5.8 0.0002 35.3 4.4 28 170-197 137-164 (784)
404 4anj_A Unconventional myosin-V 66.7 5.8 0.0002 36.6 4.4 28 170-197 141-168 (1052)
405 1w7j_A Myosin VA; motor protei 66.7 6 0.0002 35.3 4.4 28 170-197 153-180 (795)
406 2zj8_A DNA helicase, putative 66.1 3.7 0.00013 35.9 3.1 22 168-191 36-57 (720)
407 1s2m_A Putative ATP-dependent 65.8 6.3 0.00022 31.3 4.2 25 166-192 53-77 (400)
408 3fht_A ATP-dependent RNA helic 65.5 5.6 0.00019 31.7 3.8 27 164-190 55-81 (412)
409 1q0u_A Bstdead; DEAD protein, 65.0 5 0.00017 29.1 3.2 17 175-191 43-59 (219)
410 3dkp_A Probable ATP-dependent 64.3 6.4 0.00022 29.0 3.8 22 166-189 61-82 (245)
411 1kk8_A Myosin heavy chain, str 64.2 6.2 0.00021 35.4 4.1 29 169-197 165-193 (837)
412 1g8x_A Myosin II heavy chain f 63.9 6.5 0.00022 36.1 4.3 29 169-197 168-196 (1010)
413 3bor_A Human initiation factor 63.9 3.7 0.00013 30.4 2.3 16 175-190 69-84 (237)
414 4dnd_A Syntaxin-10, SYN10; str 63.9 23 0.00078 23.9 6.0 57 31-87 66-128 (130)
415 2akf_A Coronin-1A; coiled coil 63.7 11 0.00038 18.1 4.3 22 36-57 3-24 (32)
416 2ycu_A Non muscle myosin 2C, a 63.6 6.7 0.00023 36.0 4.3 29 169-197 142-170 (995)
417 1wrb_A DJVLGB; RNA helicase, D 63.4 6.8 0.00023 29.1 3.8 26 163-190 52-77 (253)
418 2lf0_A Uncharacterized protein 63.1 28 0.00095 23.0 6.0 54 37-92 8-61 (123)
419 2ic6_A Nucleocapsid protein; h 63.0 23 0.00079 21.6 7.7 60 32-91 5-65 (78)
420 2dfs_A Myosin-5A; myosin-V, in 62.0 7.9 0.00027 35.9 4.4 29 170-198 153-181 (1080)
421 3fe2_A Probable ATP-dependent 61.7 7.5 0.00026 28.7 3.7 23 167-191 62-84 (242)
422 3ly5_A ATP-dependent RNA helic 61.5 5.4 0.00018 30.1 2.9 17 175-191 93-109 (262)
423 2oxc_A Probable ATP-dependent 61.4 8 0.00027 28.3 3.8 23 166-190 56-78 (230)
424 2ykg_A Probable ATP-dependent 60.2 9.1 0.00031 33.1 4.4 30 163-194 20-49 (696)
425 2fwr_A DNA repair protein RAD2 60.0 11 0.00039 30.8 4.8 30 164-195 101-130 (472)
426 1rif_A DAR protein, DNA helica 59.6 7.6 0.00026 29.5 3.4 20 176-195 131-150 (282)
427 3eiq_A Eukaryotic initiation f 58.7 5.5 0.00019 31.8 2.6 25 165-191 71-95 (414)
428 1xti_A Probable ATP-dependent 58.1 11 0.00038 29.6 4.3 25 165-191 39-63 (391)
429 2j0s_A ATP-dependent RNA helic 57.8 9 0.00031 30.5 3.8 25 165-191 68-92 (410)
430 2i4i_A ATP-dependent RNA helic 57.6 9.1 0.00031 30.5 3.8 21 167-189 48-68 (417)
431 3fmp_B ATP-dependent RNA helic 57.1 9.9 0.00034 31.2 4.0 27 164-190 122-148 (479)
432 1bg2_A Kinesin; motor protein, 56.9 14 0.00046 29.2 4.5 29 162-190 67-95 (325)
433 2ic9_A Nucleocapsid protein; h 56.5 35 0.0012 21.6 7.6 59 32-90 5-64 (96)
434 3oiy_A Reverse gyrase helicase 55.6 9.3 0.00032 30.7 3.5 26 165-192 30-55 (414)
435 1goj_A Kinesin, kinesin heavy 54.6 15 0.00052 29.3 4.5 30 161-190 69-98 (355)
436 2oca_A DAR protein, ATP-depend 54.5 11 0.00038 31.2 3.9 21 175-195 130-150 (510)
437 1kjw_A Postsynaptic density pr 54.5 8.2 0.00028 30.0 2.9 21 174-197 106-126 (295)
438 4a4z_A Antiviral helicase SKI2 54.0 12 0.0004 34.4 4.2 30 161-192 44-73 (997)
439 3gbj_A KIF13B protein; kinesin 53.2 19 0.00066 28.7 4.9 29 162-190 82-110 (354)
440 2y65_A Kinesin, kinesin heavy 53.0 17 0.00057 29.2 4.5 29 162-190 74-102 (365)
441 1w78_A FOLC bifunctional prote 52.8 23 0.00077 28.8 5.4 35 161-197 35-71 (422)
442 3nwn_A Kinesin-like protein KI 52.3 13 0.00045 29.7 3.8 27 163-189 95-121 (359)
443 3dc4_A Kinesin-like protein NO 52.2 14 0.00049 29.4 3.9 28 163-190 85-112 (344)
444 2xgj_A ATP-dependent RNA helic 51.8 16 0.00054 33.6 4.6 30 161-192 91-120 (1010)
445 2wbe_C Bipolar kinesin KRP-130 51.5 20 0.0007 28.8 4.8 30 161-190 89-118 (373)
446 1x88_A Kinesin-like protein KI 51.5 19 0.00065 28.8 4.6 29 162-190 78-106 (359)
447 2qyw_A Vesicle transport throu 51.4 45 0.0015 21.3 7.8 29 67-95 45-73 (102)
448 1i84_S Smooth muscle myosin he 51.2 7.7 0.00026 36.3 2.5 29 169-197 165-193 (1184)
449 4a14_A Kinesin, kinesin-like p 51.0 19 0.00065 28.6 4.5 29 162-190 73-101 (344)
450 3l9o_A ATP-dependent RNA helic 50.9 13 0.00046 34.4 4.1 31 160-192 188-218 (1108)
451 4etp_A Kinesin-like protein KA 50.8 22 0.00075 28.9 4.9 28 163-190 131-158 (403)
452 1t5c_A CENP-E protein, centrom 50.4 15 0.00051 29.3 3.8 28 163-190 68-95 (349)
453 3b6u_A Kinesin-like protein KI 50.4 18 0.00062 29.1 4.3 29 162-190 91-119 (372)
454 3lre_A Kinesin-like protein KI 50.3 17 0.0006 29.0 4.2 29 162-190 95-123 (355)
455 2vvg_A Kinesin-2; motor protei 50.2 16 0.00055 29.1 4.0 29 162-190 79-107 (350)
456 2zfi_A Kinesin-like protein KI 50.0 20 0.00069 28.7 4.6 28 163-190 80-107 (366)
457 1f9v_A Kinesin-like protein KA 50.0 21 0.00072 28.4 4.6 28 163-190 75-102 (347)
458 1gm5_A RECG; helicase, replica 49.9 18 0.0006 32.3 4.5 35 158-192 374-408 (780)
459 1fuu_A Yeast initiation factor 49.4 10 0.00035 29.9 2.8 16 175-190 60-75 (394)
460 2nr8_A Kinesin-like protein KI 49.3 19 0.00066 28.8 4.3 28 163-190 94-121 (358)
461 1o5z_A Folylpolyglutamate synt 48.6 25 0.00084 28.8 5.0 33 163-197 40-74 (442)
462 3t0q_A AGR253WP; kinesin, alph 48.4 23 0.0008 28.1 4.7 28 163-190 76-103 (349)
463 1vcs_A Vesicle transport throu 47.9 51 0.0018 21.0 9.4 84 25-130 5-88 (102)
464 1jbw_A Folylpolyglutamate synt 47.9 25 0.00084 28.6 4.9 26 171-198 37-62 (428)
465 3fmo_B ATP-dependent RNA helic 47.5 18 0.00061 27.9 3.8 26 165-190 123-148 (300)
466 2h58_A Kinesin-like protein KI 46.8 23 0.00079 27.9 4.4 29 162-190 70-98 (330)
467 2zci_A Phosphoenolpyruvate car 46.7 8.6 0.00029 32.8 1.9 22 171-192 261-282 (610)
468 3h1t_A Type I site-specific re 46.7 33 0.0011 29.0 5.6 34 160-194 186-219 (590)
469 3ro3_B Minsc, peptide of prote 46.6 13 0.00046 16.4 1.7 13 67-79 8-20 (22)
470 2rep_A Kinesin-like protein KI 46.4 30 0.001 27.9 5.0 28 163-190 106-133 (376)
471 2owm_A Nckin3-434, related to 45.7 31 0.001 28.5 5.1 28 163-190 127-154 (443)
472 1v8k_A Kinesin-like protein KI 45.5 18 0.00061 29.6 3.6 28 163-190 145-172 (410)
473 3nrs_A Dihydrofolate:folylpoly 45.5 33 0.0011 28.0 5.3 36 160-197 37-74 (437)
474 2heh_A KIF2C protein; kinesin, 44.6 20 0.00069 29.0 3.8 28 163-190 125-152 (387)
475 3bfn_A Kinesin-like protein KI 44.4 17 0.00058 29.5 3.3 28 163-190 89-116 (388)
476 2wtz_A UDP-N-acetylmuramoyl-L- 43.5 37 0.0013 28.6 5.4 38 159-198 129-169 (535)
477 3u06_A Protein claret segregat 43.1 24 0.00082 28.8 4.0 28 163-190 129-156 (412)
478 2eyq_A TRCF, transcription-rep 42.3 32 0.0011 32.1 5.1 31 161-191 612-642 (1151)
479 4ehx_A Tetraacyldisaccharide 4 42.1 19 0.00064 28.2 3.1 26 173-198 36-63 (315)
480 2c5k_T Syntaxin TLG1, T-snare 42.0 63 0.0022 20.3 8.2 53 31-83 35-87 (95)
481 3eag_A UDP-N-acetylmuramate:L- 41.9 20 0.00069 28.0 3.3 24 172-197 107-130 (326)
482 2vos_A Folylpolyglutamate synt 41.3 35 0.0012 28.3 4.9 35 161-197 50-86 (487)
483 3i5x_A ATP-dependent RNA helic 41.1 32 0.0011 28.7 4.7 26 164-189 102-127 (563)
484 1e8c_A UDP-N-acetylmuramoylala 40.6 44 0.0015 27.8 5.4 39 158-198 90-131 (498)
485 2db3_A ATP-dependent RNA helic 40.0 25 0.00086 28.5 3.8 21 167-189 89-109 (434)
486 3cob_A Kinesin heavy chain-lik 39.9 27 0.00091 28.1 3.8 28 163-190 70-97 (369)
487 3lk7_A UDP-N-acetylmuramoylala 39.9 22 0.00075 29.2 3.4 24 173-198 112-135 (451)
488 1gg4_A UDP-N-acetylmuramoylala 39.4 24 0.00083 28.9 3.6 38 159-198 85-123 (452)
489 1oyw_A RECQ helicase, ATP-depe 39.4 15 0.00053 30.8 2.4 26 164-191 33-58 (523)
490 3sqw_A ATP-dependent RNA helic 38.2 38 0.0013 28.6 4.7 26 164-189 51-76 (579)
491 3v86_A De novo design helix; c 37.9 31 0.0011 15.6 2.6 10 33-42 8-17 (27)
492 2v1x_A ATP-dependent DNA helic 37.7 21 0.00073 30.5 3.1 25 165-191 53-77 (591)
493 1j6u_A UDP-N-acetylmuramate-al 37.6 49 0.0017 27.3 5.2 25 172-198 113-137 (469)
494 3twe_A Alpha4H; unknown functi 37.6 32 0.0011 15.6 4.1 18 35-52 4-21 (27)
495 3fho_A ATP-dependent RNA helic 37.5 23 0.0008 29.4 3.2 18 174-191 159-176 (508)
496 1ry6_A Internal kinesin; kines 36.9 36 0.0012 27.2 4.1 28 163-190 74-102 (360)
497 4e61_A Protein BIM1; EB1-like 36.8 85 0.0029 20.3 7.8 17 69-85 85-101 (106)
498 2zpt_X Tyrosine-ester sulfotra 36.4 31 0.0011 26.4 3.6 22 175-197 40-61 (295)
499 2pnv_A Small conductance calci 36.2 32 0.0011 18.3 2.5 17 30-46 21-37 (43)
500 4a0g_A Adenosylmethionine-8-am 33.8 29 0.001 31.1 3.4 25 173-197 34-59 (831)
No 1
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.60 E-value=1.6e-15 Score=103.86 Aligned_cols=82 Identities=7% Similarity=0.098 Sum_probs=70.6
Q ss_pred hhhhhhhhHhhhhhhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHHHHHHHHH
Q 037945 8 IMDYLVCPLCGVISKHCGYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQR-LRPTHEVNGWLESAKIMLREVDYI 86 (206)
Q Consensus 8 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~-~~~~~~~~~wl~~l~~~~~~~ed~ 86 (206)
+++.+..||.+++.+++.++.+++++++.|+++|+.|+++|.+ |+.+. ...++.++.|+.++|+++||+||+
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~d-------a~~~~~~~~d~~vk~W~~~vrdlaYD~ED~ 74 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIK-------IGEVPREQLDSQDKLWADEVRELSYVIEDV 74 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HTTSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-------HHHhccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 3455666799999999999999999999999999999999999 54442 123589999999999999999999
Q ss_pred HhhhhHhhhh
Q 037945 87 LHRGDEEIQK 96 (206)
Q Consensus 87 ld~~~~~~~~ 96 (206)
||+|.++...
T Consensus 75 iD~f~~~~~~ 84 (115)
T 3qfl_A 75 VDKFLVQVDG 84 (115)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 9999998754
No 2
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.05 E-value=1.6e-10 Score=99.25 Aligned_cols=50 Identities=14% Similarity=0.166 Sum_probs=43.9
Q ss_pred cchHHHHHHHHHhhhcC---CCeEEEEEcCCCCcHHHHHHHHHh--hhcCCCCCCc
Q 037945 155 VGLDSIISEVWRCIEDH---NEKVIGLYGMGGVGKTTLLKKLNN--KFRDTEHDFD 205 (206)
Q Consensus 155 ~g~~~~~~~l~~~L~~~---~~~vI~IvG~~G~GKTTLa~~i~~--~~~~~~~~Fd 205 (206)
+||+.++++|..+|..+ +.++|+|+||||+||||||+.+|+ +..+. ++|+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~-~~F~ 185 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIG-INYD 185 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBT-TTBS
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHh-ccCC
Confidence 69999999999999764 678999999999999999999998 45555 7786
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.66 E-value=7e-09 Score=93.77 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=42.8
Q ss_pred ccchHHHHHHHHHhhhc-CCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCCc
Q 037945 154 TVGLDSIISEVWRCIED-HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDFD 205 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~-~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~Fd 205 (206)
.+||+.++++|..+|.+ +..++|+|+||||+||||||+.+|++..+. .+|+
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~-~~Fd 181 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ-CKMD 181 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHH-HHHS
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHH-HhCC
Confidence 58999999999999986 557899999999999999999999865433 3443
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.65 E-value=1.9e-08 Score=93.14 Aligned_cols=53 Identities=19% Similarity=0.225 Sum_probs=44.2
Q ss_pred CCccchHHHHHHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC
Q 037945 152 GKTVGLDSIISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDF 204 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~F 204 (206)
..++||+.++++|...|.. ++.++|+|+||||+||||||+.+|++.....++|
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~ 178 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCF 178 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTS
T ss_pred ceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhC
Confidence 5589999999999999963 5688999999999999999999998754322444
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.62 E-value=1.9e-08 Score=86.80 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=40.8
Q ss_pred CCccchHHHHHHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++||+.+++.|...|.. ++.++|+|+||+|+||||||+.++++.
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~ 171 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDH 171 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCH
T ss_pred CeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhch
Confidence 4589999999999999974 567899999999999999999998764
No 6
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.32 E-value=6.7e-07 Score=64.28 Aligned_cols=46 Identities=22% Similarity=0.146 Sum_probs=34.9
Q ss_pred cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+|....+..+...+..++ +++++|++|+|||||++.+.+.. +.+|.
T Consensus 17 ~g~~~~l~~vsl~i~~Ge--~v~L~G~nGaGKTTLlr~l~g~l-~~~G~ 62 (158)
T 1htw_A 17 FGKKFAEILLKLHTEKAI--MVYLNGDLGAGKTTLTRGMLQGI-GHQGN 62 (158)
T ss_dssp HHHHHHHHHHHHCCSSCE--EEEEECSTTSSHHHHHHHHHHHT-TCCSC
T ss_pred HHHHHHHhccccccCCCC--EEEEECCCCCCHHHHHHHHHHhC-CCCCe
Confidence 444445555655566677 99999999999999999999987 54443
No 7
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.27 E-value=1.8e-06 Score=62.80 Aligned_cols=46 Identities=24% Similarity=0.395 Sum_probs=40.4
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|++..++.+...+..+....+.|+|++|+|||||++.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999987666678999999999999999998764
No 8
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.18 E-value=2.5e-06 Score=61.90 Aligned_cols=46 Identities=26% Similarity=0.354 Sum_probs=40.3
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|++..+..+...+......-+-|+|+.|+|||||++.+.+..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999887666678999999999999999998765
No 9
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.08 E-value=5.3e-06 Score=61.75 Aligned_cols=46 Identities=26% Similarity=0.340 Sum_probs=39.8
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|++..++.+..++..+....+.|+|++|+|||||++.+++..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4478999999999999988765569999999999999999998754
No 10
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.07 E-value=2.3e-06 Score=69.22 Aligned_cols=53 Identities=25% Similarity=0.255 Sum_probs=40.3
Q ss_pred CccccCCCCccc-hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 145 PVEERPIGKTVG-LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 145 ~~~~~~~~~~~g-~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
.+...+.+..++ ....++.+ ..+..++ +++|+|++|+|||||++.|.+...+.
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l-l~i~~Gq--~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL-LTCGIGQ--RIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH-SCEETTC--EEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CeeecccceecCCCCEEEEee-eeecCCC--EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 344445556665 34567777 6667788 99999999999999999999987654
No 11
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.07 E-value=6.3e-06 Score=65.88 Aligned_cols=43 Identities=21% Similarity=0.302 Sum_probs=38.5
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
..++||+.+++.|...+..+ ..+.|+|+.|+|||||++.+.+.
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHH
Confidence 45899999999999998876 59999999999999999998875
No 12
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.06 E-value=3.6e-06 Score=67.62 Aligned_cols=50 Identities=20% Similarity=0.323 Sum_probs=39.8
Q ss_pred ccCCCCccchHHHHHHHHHhhhcC-----CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 148 ERPIGKTVGLDSIISEVWRCIEDH-----NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 148 ~~~~~~~~g~~~~~~~l~~~L~~~-----~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+...+..+|.+..++.+...+..+ ....+.++|++|+|||||++.+.+..
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 334456888888888888777642 34589999999999999999999876
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.05 E-value=6.5e-06 Score=61.99 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=40.0
Q ss_pred CCccchHHHHHHHHHhhhcCC-CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIEDHN-EKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~-~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|++..++.+..++..+. ...+.|+|++|+|||||++.+++...
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 458999999999999988754 34789999999999999999988653
No 14
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.04 E-value=1.6e-06 Score=66.41 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=29.9
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+...+..++ +++|+|++|+|||||++.+.+-..+.+|
T Consensus 24 isl~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~p~~G 60 (235)
T 3tif_A 24 VNLNIKEGE--FVSIMGPSGSGKSTMLNIIGCLDKPTEG 60 (235)
T ss_dssp EEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred eeEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence 334455677 9999999999999999999988776544
No 15
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.02 E-value=1.6e-06 Score=65.81 Aligned_cols=40 Identities=25% Similarity=0.314 Sum_probs=31.4
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
++++...+..++ +++|+|++|+|||||++.+.+-..+.+|
T Consensus 20 l~~vsl~i~~Ge--~~~iiG~nGsGKSTLl~~l~Gl~~p~~G 59 (224)
T 2pcj_A 20 LKGISLSVKKGE--FVSIIGASGSGKSTLLYILGLLDAPTEG 59 (224)
T ss_dssp EEEEEEEEETTC--EEEEEECTTSCHHHHHHHHTTSSCCSEE
T ss_pred EeeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 334444456677 9999999999999999999988766544
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.02 E-value=2.5e-06 Score=66.46 Aligned_cols=50 Identities=24% Similarity=0.388 Sum_probs=36.4
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
+..||....++++...+..++ +++|+|++|+|||||++.|.+-..+.+|.
T Consensus 18 ~~~~~~~~vL~~vsl~i~~Ge--~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 67 (266)
T 4g1u_C 18 HYHVQQQALINDVSLHIASGE--MVAIIGPNGAGKSTLLRLLTGYLSPSHGE 67 (266)
T ss_dssp EEEETTEEEEEEEEEEEETTC--EEEEECCTTSCHHHHHHHHTSSSCCSSCE
T ss_pred EEEeCCeeEEEeeEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence 344554334444444455678 99999999999999999999987776553
No 17
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.01 E-value=5.9e-06 Score=66.90 Aligned_cols=46 Identities=22% Similarity=0.335 Sum_probs=39.8
Q ss_pred CCccchHHHHHHHHHhhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|++.+++.+..++.. +....+.|+|++|+|||||++.+++..
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999998874 345689999999999999999998865
No 18
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.99 E-value=2.2e-06 Score=66.69 Aligned_cols=40 Identities=28% Similarity=0.349 Sum_probs=31.4
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
++++...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 22 l~~vsl~i~~Ge--~~~liG~nGsGKSTLlk~l~Gl~~p~~G 61 (262)
T 1b0u_A 22 LKGVSLQARAGD--VISIIGSSGSGKSTFLRCINFLEKPSEG 61 (262)
T ss_dssp EEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 344444455677 9999999999999999999998766544
No 19
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.99 E-value=2.1e-06 Score=66.57 Aligned_cols=47 Identities=21% Similarity=0.284 Sum_probs=33.9
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.||....++++...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 16 ~y~~~~vl~~vsl~i~~Ge--~~~liG~nGsGKSTLlk~l~Gl~~p~~G 62 (257)
T 1g6h_A 16 YFGEFKALDGVSISVNKGD--VTLIIGPNGSGKSTLINVITGFLKADEG 62 (257)
T ss_dssp EETTEEEEEEECCEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred EECCEeeEeeeEEEEeCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3443223344444455677 9999999999999999999998766544
No 20
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.99 E-value=2.6e-06 Score=65.50 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=30.9
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
++...+..++ +++|+|++|+|||||++.|.+-..+.+|.
T Consensus 20 ~vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 58 (243)
T 1mv5_A 20 DISFEAQPNS--IIAFAGPSGGGKSTIFSLLERFYQPTAGE 58 (243)
T ss_dssp EEEEEECTTE--EEEEECCTTSSHHHHHHHHTTSSCCSBSC
T ss_pred EeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 3334455566 99999999999999999999987765554
No 21
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.99 E-value=1.9e-06 Score=65.02 Aligned_cols=38 Identities=34% Similarity=0.527 Sum_probs=30.0
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
++...+..++ +++|+|++|+|||||++.+.+-..+.+|
T Consensus 27 ~vsl~i~~Ge--~~~iiG~NGsGKSTLlk~l~Gl~~p~~G 64 (214)
T 1sgw_A 27 RITMTIEKGN--VVNFHGPNGIGKTTLLKTISTYLKPLKG 64 (214)
T ss_dssp EEEEEEETTC--CEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred eeEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 3334445577 9999999999999999999998766544
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.99 E-value=2.2e-06 Score=65.80 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=30.6
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+++...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 23 ~~vsl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 61 (240)
T 1ji0_A 23 KGIDLKVPRGQ--IVTLIGANGAGKTTTLSAIAGLVRAQKG 61 (240)
T ss_dssp EEEEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred eeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 33444455677 9999999999999999999998766544
No 23
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.98 E-value=2.4e-06 Score=66.46 Aligned_cols=49 Identities=27% Similarity=0.293 Sum_probs=34.3
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+..||....++++...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 31 ~~~y~~~~vL~~vsl~i~~Ge--i~~liG~NGsGKSTLlk~l~Gl~~p~~G 79 (263)
T 2olj_A 31 KKSFGSLEVLKGINVHIREGE--VVVVIGPSGSGKSTFLRCLNLLEDFDEG 79 (263)
T ss_dssp EEEETTEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EEEECCEEEEEeeEEEEcCCC--EEEEEcCCCCcHHHHHHHHHcCCCCCCc
Confidence 334443223334444445577 9999999999999999999998766544
No 24
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.98 E-value=2.3e-06 Score=66.99 Aligned_cols=39 Identities=26% Similarity=0.427 Sum_probs=30.5
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+++...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 25 ~~isl~i~~Ge--~~~iiGpnGsGKSTLl~~l~Gl~~p~~G 63 (275)
T 3gfo_A 25 KGINMNIKRGE--VTAILGGNGVGKSTLFQNFNGILKPSSG 63 (275)
T ss_dssp EEEEEEEETTS--EEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EeeEEEEcCCC--EEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence 33444455577 9999999999999999999987766544
No 25
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.97 E-value=5.9e-06 Score=65.56 Aligned_cols=45 Identities=18% Similarity=0.146 Sum_probs=36.0
Q ss_pred CCCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 150 PIGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 150 ~~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++..|+ ...++++...+..++ +++|+|++|+|||||++.|.+..
T Consensus 106 ~vs~~y~-~~vL~~vsl~i~~Ge--~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 106 NIELITF-INALKLWLKGIPKKN--CLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCCHHHH-HHHHHHHHHTCTTCS--EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEEcC-hhhhccceEEecCCC--EEEEECCCCCcHHHHHHHHhhhc
Confidence 3344455 456777887788888 99999999999999999998764
No 26
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.97 E-value=2.5e-06 Score=64.98 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=28.8
Q ss_pred HhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 166 RCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 166 ~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
..+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 29 l~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 63 (229)
T 2pze_A 29 FKIERGQ--LLAVAGSTGAGKTSLLMMIMGELEPSEG 63 (229)
T ss_dssp EEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EEEcCCC--EEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 3344577 9999999999999999999998776544
No 27
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.96 E-value=2.7e-06 Score=65.94 Aligned_cols=49 Identities=29% Similarity=0.468 Sum_probs=34.3
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+..||....++++...+..++ +++|+|++|+|||||++.+.+-..+.+|
T Consensus 22 ~~~y~~~~vl~~vsl~i~~Ge--i~~l~G~NGsGKSTLlk~l~Gl~~p~~G 70 (256)
T 1vpl_A 22 RKRIGKKEILKGISFEIEEGE--IFGLIGPNGAGKTTTLRIISTLIKPSSG 70 (256)
T ss_dssp EEEETTEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EEEECCEEEEEeeEEEEcCCc--EEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 334443223333444445577 9999999999999999999998766544
No 28
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.96 E-value=5.6e-06 Score=68.99 Aligned_cols=55 Identities=24% Similarity=0.370 Sum_probs=41.1
Q ss_pred CccccCCCCccc-hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 145 PVEERPIGKTVG-LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 145 ~~~~~~~~~~~g-~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.+...+.+..++ ....++.+ ..+..++ +++|+|++|+|||||++.|.+...+..+
T Consensus 131 ~l~~~~v~~~~~tg~~vld~v-l~i~~Gq--~~~IvG~sGsGKSTLl~~Iag~~~~~~G 186 (438)
T 2dpy_A 131 PLQRTPIEHVLDTGVRAINAL-LTVGRGQ--RMGLFAGSGVGKSVLLGMMARYTRADVI 186 (438)
T ss_dssp TTTSCCCCSBCCCSCHHHHHH-SCCBTTC--EEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred ceEEeccceecCCCceEEeee-EEecCCC--EEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence 344444555665 34577777 6677788 9999999999999999999998766433
No 29
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.95 E-value=2.8e-06 Score=66.66 Aligned_cols=49 Identities=33% Similarity=0.384 Sum_probs=34.8
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+..||....++++...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 28 ~~~y~~~~vL~~isl~i~~Ge--~~~liG~NGsGKSTLlk~l~Gl~~p~~G 76 (279)
T 2ihy_A 28 GRMKQGKTILKKISWQIAKGD--KWILYGLNGAGKTTLLNILNAYEPATSG 76 (279)
T ss_dssp EEEETTEEEEEEEEEEEETTC--EEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred EEEECCEEEEEeeeEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCe
Confidence 334443333444444455677 9999999999999999999998766544
No 30
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.94 E-value=2.3e-06 Score=65.56 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=29.5
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 24 vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 60 (237)
T 2cbz_A 24 ITFSIPEGA--LVAVVGQVGCGKSSLLSALLAEMDKVEG 60 (237)
T ss_dssp EEEEECTTC--EEEEECSTTSSHHHHHHHHTTCSEEEEE
T ss_pred eEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 334455677 9999999999999999999987765434
No 31
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.94 E-value=3.1e-06 Score=65.26 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=29.6
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 28 vsl~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 64 (247)
T 2ff7_A 28 INLSIKQGE--VIGIVGRSGSGKSTLTKLIQRFYIPENG 64 (247)
T ss_dssp EEEEEETTC--EEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred eEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 333445577 9999999999999999999998766544
No 32
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.93 E-value=3.1e-06 Score=65.46 Aligned_cols=39 Identities=23% Similarity=0.365 Sum_probs=30.8
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+++...+..++ +++|+|++|+|||||++.+.+-..+.+|
T Consensus 22 ~~isl~i~~Ge--~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 60 (253)
T 2nq2_C 22 QQLNFDLNKGD--ILAVLGQNGCGKSTLLDLLLGIHRPIQG 60 (253)
T ss_dssp EEEEEEEETTC--EEEEECCSSSSHHHHHHHHTTSSCCSEE
T ss_pred EEEEEEECCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 33444455677 9999999999999999999998766544
No 33
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.93 E-value=1.2e-05 Score=64.40 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=37.2
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++||+.+++.|.. +.. .++.|+|+.|+|||||++.+.+..
T Consensus 13 ~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc
Confidence 458999999999999 765 599999999999999999998764
No 34
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.92 E-value=3.5e-06 Score=65.68 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=29.6
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 26 vsl~i~~Ge--~~~liG~nGsGKSTLl~~i~Gl~~p~~G 62 (266)
T 2yz2_A 26 VSLVINEGE--CLLVAGNTGSGKSTLLQIVAGLIEPTSG 62 (266)
T ss_dssp EEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred eEEEEcCCC--EEEEECCCCCcHHHHHHHHhCCCCCCCc
Confidence 333445577 9999999999999999999998766544
No 35
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.92 E-value=3.5e-06 Score=65.84 Aligned_cols=39 Identities=26% Similarity=0.290 Sum_probs=30.4
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+++...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 36 ~~vsl~i~~Ge--~~~i~G~nGsGKSTLlk~l~Gl~~p~~G 74 (271)
T 2ixe_A 36 QGLTFTLYPGK--VTALVGPNGSGKSTVAALLQNLYQPTGG 74 (271)
T ss_dssp EEEEEEECTTC--EEEEECSTTSSHHHHHHHHTTSSCCSEE
T ss_pred EeeEEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence 33334444577 9999999999999999999998766544
No 36
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.92 E-value=1.3e-05 Score=64.39 Aligned_cols=47 Identities=21% Similarity=0.440 Sum_probs=40.3
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...++|.+..++.+...+..+.+.-+.++|++|+||||+++.+.+..
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34578988899999999998875449999999999999999998764
No 37
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.92 E-value=6.3e-06 Score=67.55 Aligned_cols=46 Identities=20% Similarity=0.102 Sum_probs=36.8
Q ss_pred CCccchHHHHHHHHHhh-hc---C---CCeEEEE--EcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCI-ED---H---NEKVIGL--YGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L-~~---~---~~~vI~I--vG~~G~GKTTLa~~i~~~~ 197 (206)
..++|++.+++.+...+ .. + ....+.| +|++|+|||||++.+++..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 45899999999998888 42 2 3445666 9999999999999998765
No 38
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.91 E-value=2.6e-07 Score=74.82 Aligned_cols=49 Identities=31% Similarity=0.373 Sum_probs=34.8
Q ss_pred CCcc-chHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 152 GKTV-GLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 152 ~~~~-g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+..| |....++++...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 21 ~~~y~g~~~vl~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G 70 (355)
T 1z47_A 21 EKIYPGGARSVRGVSFQIREGE--MVGLLGPSGSGKTTILRLIAGLERPTKG 70 (355)
T ss_dssp EECCTTSTTCEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred EEEEcCCCEEEeeeEEEECCCC--EEEEECCCCCcHHHHHHHHhCCCCCCcc
Confidence 3445 43323334444455677 9999999999999999999998776544
No 39
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.90 E-value=2e-05 Score=62.45 Aligned_cols=46 Identities=24% Similarity=0.320 Sum_probs=40.4
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.+..++..+...-+-++|++|+||||+|+.+++..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4588999999999999988776669999999999999999998764
No 40
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.85 E-value=2.4e-05 Score=63.46 Aligned_cols=48 Identities=21% Similarity=0.282 Sum_probs=39.8
Q ss_pred CCccchHHHHHHHHHhhhc----CCCe--EEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 152 GKTVGLDSIISEVWRCIED----HNEK--VIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~----~~~~--vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
..++|++..++.+..++.. +... .+.|+|++|+|||||++.+.+....
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4589999999998888875 2333 8999999999999999999987643
No 41
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.85 E-value=1.5e-05 Score=58.03 Aligned_cols=42 Identities=19% Similarity=0.234 Sum_probs=30.3
Q ss_pred hHHHHHHHHHhhhc---CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 157 LDSIISEVWRCIED---HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 157 ~~~~~~~l~~~L~~---~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
....++.+..++.+ ..-..+.|+|++|+|||||++.+++...
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34455555555443 2234899999999999999999998764
No 42
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.85 E-value=2.1e-05 Score=63.79 Aligned_cols=46 Identities=20% Similarity=0.150 Sum_probs=38.7
Q ss_pred CCccchHHHHHHHHHhhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|++..++.+...+.. +....+.|+|++|+|||||++.+++..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999988877754 345689999999999999999998864
No 43
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.83 E-value=1.9e-05 Score=63.94 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=39.4
Q ss_pred CCccchHHHHHHHHHhhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~----~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|++..++.+..++.. +....+.|+|++|+|||||++.+++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999998853 445689999999999999999998765
No 44
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.83 E-value=2.1e-05 Score=62.25 Aligned_cols=46 Identities=28% Similarity=0.385 Sum_probs=40.0
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|++..++.+..++..+....+-++|++|+||||+++.+++..
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4588999999999999988765559999999999999999998764
No 45
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.83 E-value=1.6e-05 Score=63.81 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=39.5
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.+..++..+...-+.++|++|+|||||++.+.+..
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4588998899999999988755558999999999999999998763
No 46
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=1.3e-05 Score=64.48 Aligned_cols=45 Identities=18% Similarity=0.142 Sum_probs=38.1
Q ss_pred CCccchHHHHHHHHHhh-hcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 152 GKTVGLDSIISEVWRCI-EDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L-~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
..++|.+...+.+..++ ..+....+.|+|++|+|||||++.+.+.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred HHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 45789998999998888 6665444999999999999999999885
No 47
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.82 E-value=6.8e-06 Score=66.61 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=34.9
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.||....++++...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 13 ~y~~~~~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~G 59 (359)
T 3fvq_A 13 SFQNTPVLNDISLSLDPGE--ILFIIGASGCGKTTLLRCLAGFEQPDSG 59 (359)
T ss_dssp EETTEEEEEEEEEEECTTC--EEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred EECCEEEEEeeEEEEcCCC--EEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence 3443334444555566677 9999999999999999999998776544
No 48
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.82 E-value=1.5e-05 Score=61.46 Aligned_cols=44 Identities=23% Similarity=0.234 Sum_probs=33.0
Q ss_pred CCcc-chHHHHHHHHHhhhc---CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTV-GLDSIISEVWRCIED---HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~-g~~~~~~~l~~~L~~---~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+..| +....++++...+.. +. +|.|+|++|+||||+++.+.+..
T Consensus 25 ~~~~~~~~~~l~~~~~~i~~~l~g~--~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 25 HSPFDEEQQILKKKAEEVKPYLNGR--SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -------CHHHHHHHHTTHHHHTTC--CEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEecCcchhhhhhhhhhhhhcCCC--EEEEECCCCCCHHHHHHHHHHhc
Confidence 4445 445678888888887 77 89999999999999999998744
No 49
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.80 E-value=6.7e-06 Score=70.98 Aligned_cols=51 Identities=20% Similarity=0.219 Sum_probs=39.6
Q ss_pred CCCccch--HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 151 IGKTVGL--DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 151 ~~~~~g~--~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+..|+. ...++++...+..++ +++|+|++|+|||||++.+.+..+|.+|.
T Consensus 347 v~~~y~~~~~~~l~~i~l~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 399 (582)
T 3b5x_A 347 VTFTYQGKEKPALSHVSFSIPQGK--TVALVGRSGSGKSTIANLFTRFYDVDSGS 399 (582)
T ss_pred EEEEcCCCCccccccceEEECCCC--EEEEECCCCCCHHHHHHHHhcCCCCCCCE
Confidence 3444542 345667777777788 99999999999999999999988776554
No 50
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.80 E-value=1.1e-05 Score=62.86 Aligned_cols=43 Identities=23% Similarity=0.284 Sum_probs=30.8
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
+..||....++++...+..++ +++|+|++|+|||||++.|.+-
T Consensus 27 ~~~y~~~~vl~~vsl~i~~Ge--~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 27 HVSVEDKAILRGLSLDVHPGE--VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEETTEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCEEEEEeeEEEEcCCC--EEEEECCCCCCHHHHHHHHhCC
Confidence 334443323334444455577 9999999999999999999986
No 51
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.80 E-value=1.1e-05 Score=62.32 Aligned_cols=34 Identities=32% Similarity=0.376 Sum_probs=27.7
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
++++...+..++ +++|+|++|+|||||++.|.+-
T Consensus 19 l~~vsl~i~~Ge--~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 19 LKGVNLVVPKGE--VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTC
T ss_pred EeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCC
Confidence 334444455677 9999999999999999999995
No 52
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.79 E-value=8.6e-06 Score=66.10 Aligned_cols=40 Identities=30% Similarity=0.432 Sum_probs=31.6
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
++++...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 44 L~~vsl~i~~Ge--i~~IiGpnGaGKSTLlr~i~GL~~p~~G 83 (366)
T 3tui_C 44 LNNVSLHVPAGQ--IYGVIGASGAGKSTLIRCVNLLERPTEG 83 (366)
T ss_dssp EEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred EEeeEEEEcCCC--EEEEEcCCCchHHHHHHHHhcCCCCCce
Confidence 344444455677 9999999999999999999998776544
No 53
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.78 E-value=2.8e-05 Score=64.94 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=40.6
Q ss_pred CCCccchHHHH---HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSII---SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~---~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...++|.+..+ ..+...+..+....+-++|++|+||||||+.|.+..
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh
Confidence 45688988877 678888888887889999999999999999999875
No 54
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.78 E-value=5.9e-06 Score=65.15 Aligned_cols=32 Identities=28% Similarity=0.467 Sum_probs=26.8
Q ss_pred hcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 169 EDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 169 ~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 62 ~~Ge--~~~i~G~NGsGKSTLlk~l~Gl~~p~~G 93 (290)
T 2bbs_A 62 ERGQ--LLAVAGSTGAGKTSLLMMIMGELEPSEG 93 (290)
T ss_dssp CTTC--EEEEEESTTSSHHHHHHHHTTSSCEEEE
T ss_pred cCCC--EEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 3466 9999999999999999999987765434
No 55
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.77 E-value=1.6e-05 Score=64.64 Aligned_cols=37 Identities=35% Similarity=0.377 Sum_probs=31.7
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
+.+...+..++ .++|+|++|+|||||++.+.+...+.
T Consensus 166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~~~~ 202 (361)
T 2gza_A 166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEIPFD 202 (361)
T ss_dssp HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTSCTT
T ss_pred HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 56666677788 99999999999999999999887654
No 56
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.77 E-value=9.6e-06 Score=65.79 Aligned_cols=40 Identities=30% Similarity=0.405 Sum_probs=31.4
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
++++...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 19 l~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (359)
T 2yyz_A 19 VDGVSFEVKDGE--FVALLGPSGCGKTTTLLMLAGIYKPTSG 58 (359)
T ss_dssp EEEEEEEECTTC--EEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred EeeeEEEEcCCC--EEEEEcCCCchHHHHHHHHHCCCCCCcc
Confidence 334444455677 9999999999999999999998776544
No 57
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.77 E-value=2.1e-05 Score=62.46 Aligned_cols=30 Identities=33% Similarity=0.582 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
..+|+|+|++|+|||||++.+.+...+.++
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g 131 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGK 131 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCC
Confidence 349999999999999999999988776533
No 58
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.77 E-value=1e-05 Score=65.75 Aligned_cols=40 Identities=28% Similarity=0.458 Sum_probs=31.4
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
++++...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 19 l~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (362)
T 2it1_A 19 LNNINLKIKDGE--FMALLGPSGSGKSTLLYTIAGIYKPTSG 58 (362)
T ss_dssp EEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred EEeeEEEECCCC--EEEEECCCCchHHHHHHHHhcCCCCCce
Confidence 334444455677 9999999999999999999998776544
No 59
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.76 E-value=1e-05 Score=66.03 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=34.2
Q ss_pred cchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 155 VGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 155 ~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
||....++++...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 13 yg~~~~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~p~~G 58 (381)
T 3rlf_A 13 WGEVVVSKDINLDIHEGE--FVVFVGPSGCGKSTLLRMIAGLETITSG 58 (381)
T ss_dssp ETTEEEEEEEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred ECCEEEEeeeEEEECCCC--EEEEEcCCCchHHHHHHHHHcCCCCCCe
Confidence 333333444445556677 9999999999999999999998776544
No 60
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.76 E-value=1.9e-05 Score=62.90 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
-.+|+|+|++|+|||||++.|.+-..+.
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~~~ 117 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLARW 117 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTS
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcccc
Confidence 4599999999999999999999877653
No 61
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.76 E-value=1.6e-05 Score=63.05 Aligned_cols=29 Identities=38% Similarity=0.566 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.+++|+|++|+|||||++.+.+...+.+|
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g 129 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGT 129 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 39999999999999999999988765433
No 62
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.76 E-value=2.3e-05 Score=62.88 Aligned_cols=41 Identities=27% Similarity=0.257 Sum_probs=33.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
..+.+...+..++ .++|+|++|+|||||++.+.+...+.+|
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~~~~~g 200 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFIPKEER 200 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGSCTTSC
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 4566677777788 9999999999999999999998766533
No 63
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.76 E-value=6.5e-06 Score=65.40 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=30.9
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
++++...+..++ +++|+|++|+|||||++.|.+...+.+|
T Consensus 70 L~~isl~i~~Ge--~vaivG~sGsGKSTLl~ll~gl~~p~~G 109 (306)
T 3nh6_A 70 LQDVSFTVMPGQ--TLALVGPSGAGKSTILRLLFRFYDISSG 109 (306)
T ss_dssp EEEEEEEECTTC--EEEEESSSCHHHHHHHHHHTTSSCCSEE
T ss_pred eeeeeEEEcCCC--EEEEECCCCchHHHHHHHHHcCCCCCCc
Confidence 334444445577 9999999999999999999988766544
No 64
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.75 E-value=1.1e-05 Score=65.66 Aligned_cols=38 Identities=32% Similarity=0.361 Sum_probs=30.1
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
++...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 29 ~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G 66 (372)
T 1v43_A 29 KLNLTIKDGE--FLVLLGPSGCGKTTTLRMIAGLEEPTEG 66 (372)
T ss_dssp EEEEEECTTC--EEEEECCTTSSHHHHHHHHHTSSCCSEE
T ss_pred eeEEEECCCC--EEEEECCCCChHHHHHHHHHcCCCCCce
Confidence 3333444577 9999999999999999999998776544
No 65
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.75 E-value=2.3e-05 Score=55.52 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
..+.|+|++|+|||||++.+++...+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 38999999999999999999987654
No 66
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.74 E-value=1.1e-05 Score=65.81 Aligned_cols=39 Identities=26% Similarity=0.294 Sum_probs=31.0
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+++...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 20 ~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (372)
T 1g29_1 20 REMSLEVKDGE--FMILLGPSGCGKTTTLRMIAGLEEPSRG 58 (372)
T ss_dssp EEEEEEEETTC--EEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred eeeEEEEcCCC--EEEEECCCCcHHHHHHHHHHcCCCCCcc
Confidence 33444455677 9999999999999999999998776544
No 67
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.74 E-value=1.4e-05 Score=62.04 Aligned_cols=32 Identities=28% Similarity=0.333 Sum_probs=26.5
Q ss_pred HhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 166 RCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 166 ~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
..+..++ +++|+|++|+|||||++.|.+-..+
T Consensus 41 l~i~~Ge--~~~i~G~nGsGKSTLl~~l~Gl~~~ 72 (260)
T 2ghi_A 41 FFIPSGT--TCALVGHTGSGKSTIAKLLYRFYDA 72 (260)
T ss_dssp EEECTTC--EEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred EEECCCC--EEEEECCCCCCHHHHHHHHhccCCC
Confidence 3344567 9999999999999999999987654
No 68
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.73 E-value=4.2e-05 Score=53.78 Aligned_cols=44 Identities=23% Similarity=0.334 Sum_probs=32.9
Q ss_pred ccchHHHHHHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 154 TVGLDSIISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
++|....+.++...+.. ....-|-|+|++|+|||+||+.|++..
T Consensus 3 iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 3 LIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred ceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 57777777777776643 222257799999999999999998764
No 69
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.72 E-value=1.2e-05 Score=62.43 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=28.3
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+...+. ++ +++|+|++|+|||||++.+.+-. +.+|
T Consensus 24 vsl~i~-Ge--~~~i~G~NGsGKSTLlk~l~Gl~-p~~G 58 (263)
T 2pjz_A 24 INLEVN-GE--KVIILGPNGSGKTTLLRAISGLL-PYSG 58 (263)
T ss_dssp EEEEEC-SS--EEEEECCTTSSHHHHHHHHTTSS-CCEE
T ss_pred eeEEEC-CE--EEEEECCCCCCHHHHHHHHhCCC-CCCc
Confidence 334455 66 99999999999999999999877 6544
No 70
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.71 E-value=5.1e-05 Score=63.78 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=40.1
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...++|++..+..+...|......-+-++|++|+||||||+.+....
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999976544567899999999999999998875
No 71
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.70 E-value=7.7e-06 Score=66.25 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=31.8
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
++++...+..++ +++|+|++|+|||||++.|.+-..+.+|
T Consensus 21 l~~vsl~i~~Ge--~~~llGpnGsGKSTLLr~iaGl~~p~~G 60 (353)
T 1oxx_K 21 LDNVNINIENGE--RFGILGPSGAGKTTFMRIIAGLDVPSTG 60 (353)
T ss_dssp EEEEEEEECTTC--EEEEECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred EeceEEEECCCC--EEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 344444556677 9999999999999999999998776544
No 72
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.69 E-value=2.3e-05 Score=67.85 Aligned_cols=34 Identities=38% Similarity=0.571 Sum_probs=29.7
Q ss_pred hcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC
Q 037945 169 EDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDF 204 (206)
Q Consensus 169 ~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~F 204 (206)
..++ +++|+|+||+|||||++.|.+...+.+|.+
T Consensus 101 ~~Ge--i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 101 RPGQ--VLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CTTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCCC--EEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 3466 999999999999999999999888876765
No 73
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.69 E-value=3.5e-05 Score=63.63 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
..+++|+|++|+|||||++.+.+...+.+|
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~G 98 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEG 98 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCc
Confidence 349999999999999999999996655434
No 74
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.68 E-value=5e-05 Score=60.29 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.-.+|+|+|++|+|||||++.+.+...
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345999999999999999999998765
No 75
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.68 E-value=5.2e-05 Score=59.11 Aligned_cols=46 Identities=33% Similarity=0.402 Sum_probs=37.1
Q ss_pred CCccchHHHHHHHHHhhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.|...+.. ....-+-|+|++|+||||||+.+++..
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4588999888888777642 234579999999999999999998865
No 76
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.67 E-value=2.4e-05 Score=66.84 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=29.5
Q ss_pred hhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 167 CIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 167 ~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+..++ +++|+|+||+|||||++.|.+...+.+|.
T Consensus 43 ~i~~Ge--~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 43 VVKEGM--VVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CCCTTS--EEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred cCCCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 455677 99999999999999999999987766554
No 77
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.67 E-value=2.9e-05 Score=57.59 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
-.+|+|+|++|+|||||++.+.+.
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 349999999999999999999765
No 78
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=97.67 E-value=2.7e-05 Score=66.60 Aligned_cols=32 Identities=41% Similarity=0.561 Sum_probs=27.8
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++ +++|+|++|+|||||++.|++...+.+|.
T Consensus 311 ~Ge--~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~ 342 (538)
T 1yqt_A 311 KGE--VIGIVGPNGIGKTTFVKMLAGVEEPTEGK 342 (538)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 356 99999999999999999999988776564
No 79
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.66 E-value=2.4e-05 Score=64.69 Aligned_cols=42 Identities=24% Similarity=0.127 Sum_probs=31.6
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.||... ++++...+..+..--++|+|++|+|||||++.+++.
T Consensus 24 ~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 24 GFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 445434 788888888888222999999999999999999875
No 80
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.66 E-value=2.7e-05 Score=63.11 Aligned_cols=27 Identities=41% Similarity=0.621 Sum_probs=24.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
.+|+|+|++|+|||||++.+.+...+.
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 499999999999999999999877654
No 81
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.65 E-value=4.7e-05 Score=60.08 Aligned_cols=46 Identities=26% Similarity=0.340 Sum_probs=39.8
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.+..++..+....+-++|++|+||||+++.+.+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 4588999999999999888766569999999999999999998764
No 82
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.65 E-value=2.9e-05 Score=67.30 Aligned_cols=33 Identities=39% Similarity=0.545 Sum_probs=28.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCCC
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHDF 204 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~F 204 (206)
.++ +++|+|+||+|||||++.|.+...+.+|..
T Consensus 381 ~Ge--i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I 413 (607)
T 3bk7_A 381 KGE--VIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413 (607)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 356 999999999999999999999887765643
No 83
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.64 E-value=2.9e-05 Score=62.50 Aligned_cols=40 Identities=25% Similarity=0.392 Sum_probs=28.9
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 158 DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 158 ~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
...++++...+..+. +++|+|++|+|||||++.+.+...+
T Consensus 42 ~~~l~~i~~~~~~g~--~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAI--RVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp HHHHHHHGGGCCCSE--EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCe--EEEEECCCCCCHHHHHHHHHHhhhh
Confidence 334445544333444 9999999999999999999876543
No 84
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.64 E-value=9.1e-05 Score=59.80 Aligned_cols=47 Identities=19% Similarity=0.309 Sum_probs=39.9
Q ss_pred CCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|++..++.+...+..+.. +.+-|+|+.|+|||||++.+.+...
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred hhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999887653 4688999999999999999987653
No 85
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.62 E-value=3.9e-05 Score=61.51 Aligned_cols=29 Identities=38% Similarity=0.540 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
...+|+|+|++|+|||||++.+.+...+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~ 156 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNH 156 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 35699999999999999999999877654
No 86
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.61 E-value=8.1e-05 Score=62.63 Aligned_cols=28 Identities=43% Similarity=0.616 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
-.+|+|+|++|+|||||++.|.+...+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~ 320 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQ 320 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhc
Confidence 3599999999999999999999876554
No 87
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.61 E-value=2.8e-05 Score=66.43 Aligned_cols=32 Identities=31% Similarity=0.582 Sum_probs=27.7
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++ +++|+|++|+|||||++.|++-..+.+|.
T Consensus 293 ~Ge--i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 324 (538)
T 3ozx_A 293 EGE--IIGILGPNGIGKTTFARILVGEITADEGS 324 (538)
T ss_dssp TTC--EEEEECCTTSSHHHHHHHHTTSSCCSBCC
T ss_pred CCC--EEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 355 99999999999999999999988776554
No 88
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.61 E-value=9.2e-05 Score=58.49 Aligned_cols=46 Identities=28% Similarity=0.392 Sum_probs=35.7
Q ss_pred CCccchHHHHHHHHHhhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.|...+.. ...+.|.++|++|+||||||+.+++..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4578888877777666532 234579999999999999999999865
No 89
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.61 E-value=3.3e-05 Score=58.83 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=23.1
Q ss_pred hhhcCCCeEEEEEcCCCCcHHHHHHHHHh
Q 037945 167 CIEDHNEKVIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 167 ~L~~~~~~vI~IvG~~G~GKTTLa~~i~~ 195 (206)
.+..++ +++|+|++|+|||||++.+..
T Consensus 26 gi~~G~--~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGT--TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTC--EEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCc--EEEEEeCCCCCHHHHHHHHHH
Confidence 344567 999999999999999999883
No 90
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.60 E-value=4.3e-05 Score=58.47 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLN 194 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~ 194 (206)
..+|+|+|++|+|||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3499999999999999999998
No 91
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.60 E-value=8e-05 Score=59.46 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=30.9
Q ss_pred cchHHHHHHHHHhhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 155 VGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 155 ~g~~~~~~~l~~~L~~----~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
+|....+..+...+.. +...+|+|.|++|+|||||++.+..-..
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4444444444444443 2356999999999999999999987654
No 92
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=97.59 E-value=3.3e-05 Score=66.91 Aligned_cols=35 Identities=31% Similarity=0.481 Sum_probs=29.7
Q ss_pred hhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 167 CIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 167 ~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+..++ +++|+|+||+|||||++.|.+...+.+|.
T Consensus 113 ~i~~Ge--~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 113 IVKDGM--VVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CCCTTS--EEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCCCCC--EEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 455677 99999999999999999999988776554
No 93
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.57 E-value=6e-05 Score=63.36 Aligned_cols=30 Identities=23% Similarity=0.195 Sum_probs=26.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.+++|+|++|+|||||++.|.+-..+.+|.
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 59 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLTL 59 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence 499999999999999999999988776564
No 94
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.57 E-value=0.00011 Score=57.62 Aligned_cols=46 Identities=22% Similarity=0.227 Sum_probs=36.5
Q ss_pred CCccchHHHHHHHHHhhhc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED------------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~------------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.+...+.. ...+-+.++|++|+||||||+.+.+..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4588988888888776632 124588999999999999999998865
No 95
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.57 E-value=5.2e-05 Score=59.76 Aligned_cols=46 Identities=33% Similarity=0.356 Sum_probs=36.4
Q ss_pred CccchHHHHHHHHHhhhcC---------CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 153 KTVGLDSIISEVWRCIEDH---------NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~~---------~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++|.+..++.+...+... ....+.++|++|+||||||+.+.+...
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHc
Confidence 3678888888877777642 134899999999999999999988653
No 96
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.56 E-value=1.8e-05 Score=60.03 Aligned_cols=28 Identities=29% Similarity=0.248 Sum_probs=18.1
Q ss_pred hhcCCCeEEEEEcCCCCcHHHHHHHHH-hhh
Q 037945 168 IEDHNEKVIGLYGMGGVGKTTLLKKLN-NKF 197 (206)
Q Consensus 168 L~~~~~~vI~IvG~~G~GKTTLa~~i~-~~~ 197 (206)
+..+. +|+|+|++|+|||||++.+. +..
T Consensus 24 v~~G~--ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 24 KSVGV--ILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EECCC--EEEEECSCC----CHHHHHHC---
T ss_pred cCCCC--EEEEECCCCCCHHHHHHHHHhcCC
Confidence 34455 99999999999999999999 654
No 97
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.55 E-value=0.00015 Score=55.60 Aligned_cols=46 Identities=26% Similarity=0.285 Sum_probs=33.7
Q ss_pred CCccchHHHHHHHHHhhh---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIE---D---------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~---~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.+...+. . ....-|-++|++|+||||||+.+++..
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 457888777666655432 2 123467899999999999999998865
No 98
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.55 E-value=0.00011 Score=62.42 Aligned_cols=46 Identities=20% Similarity=0.292 Sum_probs=38.8
Q ss_pred CCccchHHHHHHHHHhhhc-----------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED-----------------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-----------------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.+..++.. +..+.+-|+|++|+||||||+.+.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4588999999999988875 124689999999999999999998765
No 99
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.55 E-value=0.00012 Score=55.06 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 158 DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 158 ~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
+..+..+..++..+....+.|+|++|+|||||++.+++...
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45666666666655556899999999999999999987653
No 100
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.54 E-value=4.7e-05 Score=59.91 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=31.9
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
.++++..-+..++ +++|+|++|+|||||++.+.....+.
T Consensus 24 ~Ld~i~~~l~~G~--~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 24 GINDKTLGARGGE--VIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp THHHHHCSBCTTC--EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCe--EEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 4566665666788 99999999999999999998876543
No 101
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.53 E-value=3.7e-05 Score=64.39 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=30.0
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
++...+..++ +++|+|++|+|||||++.+.+-..+.+|
T Consensus 130 ~vsl~i~~Ge--~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 130 KIRMSNFEGP--RVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp HHHHHSSSCC--CEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred cCceEeCCCC--EEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 4555555677 9999999999999999999987654433
No 102
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.53 E-value=0.00014 Score=57.33 Aligned_cols=44 Identities=20% Similarity=0.341 Sum_probs=32.6
Q ss_pred ccchHHHHHHHHHhhh---------------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 154 TVGLDSIISEVWRCIE---------------DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~---------------~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
++|.+..++.|...+. .....-+-++|++|+||||||+.+.+..
T Consensus 33 i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 33 LIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 6787777666665443 2234468999999999999999887664
No 103
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.51 E-value=0.00013 Score=58.33 Aligned_cols=46 Identities=26% Similarity=0.296 Sum_probs=37.7
Q ss_pred CCccchHHHHHHHHHhhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.+..++.. .....+-|+|++|+||||||+.+.+..
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4589999888888887764 334578999999999999999998764
No 104
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.51 E-value=0.00014 Score=56.79 Aligned_cols=47 Identities=28% Similarity=0.243 Sum_probs=32.1
Q ss_pred CCccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..+.|.+..++.|...+. . .-.+=+.++|++|+|||||++.|.+...
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~ 69 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG 69 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 346677777766655432 1 0112399999999999999999998754
No 105
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.51 E-value=0.00013 Score=55.97 Aligned_cols=47 Identities=26% Similarity=0.317 Sum_probs=33.3
Q ss_pred CCccchHHHHHHHHHh---hhc---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRC---IED---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~---L~~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|.+..++.+... +.. .-.+-+.|+|++|+|||||++.+.+...
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4578887766655443 322 1123588999999999999999988753
No 106
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.48 E-value=8.5e-05 Score=59.21 Aligned_cols=45 Identities=11% Similarity=0.094 Sum_probs=38.3
Q ss_pred ccchHHHHHHHHHhhhc----CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 154 TVGLDSIISEVWRCIED----HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~----~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..+|+.+++.|...|.. +....+-|+|++|+|||++++.|.+...
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999988877764 5666899999999999999999998764
No 107
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.47 E-value=0.00018 Score=56.63 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
+...+|+|+|+.|+|||||++.+.....
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4456999999999999999999877653
No 108
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.47 E-value=0.00013 Score=61.98 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=32.1
Q ss_pred HHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 159 SIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 159 ~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
..++.+...+..+. .|+|+|++|+|||||++.+.+...+.
T Consensus 248 ~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 248 GVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp HHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred HHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 34556666666677 79999999999999999999877654
No 109
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.47 E-value=0.00011 Score=58.28 Aligned_cols=46 Identities=22% Similarity=0.390 Sum_probs=36.8
Q ss_pred CCccchHHHHHHHHHhhhc-----CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..+..+...+.. .....+-|+|++|+||||||+.+++..
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred HHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh
Confidence 5588998888877777652 233578899999999999999998765
No 110
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.46 E-value=0.00016 Score=53.33 Aligned_cols=40 Identities=33% Similarity=0.321 Sum_probs=30.0
Q ss_pred HHHHHHHHhhhcC----CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 159 SIISEVWRCIEDH----NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 159 ~~~~~l~~~L~~~----~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++.+..++... ....+-|+|++|+|||||++.+++...
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 36 KAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp HHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3555556666543 115899999999999999999998764
No 111
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.46 E-value=0.00013 Score=63.24 Aligned_cols=45 Identities=16% Similarity=0.283 Sum_probs=40.3
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|.+..++.+...+..+. .+.|+|++|+||||||+.|.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCC
Confidence 458899999999999998887 999999999999999999998764
No 112
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.45 E-value=8.1e-05 Score=57.32 Aligned_cols=21 Identities=48% Similarity=0.575 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 037945 174 KVIGLYGMGGVGKTTLLKKLN 194 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~ 194 (206)
.+|+|+|++|+|||||++.+.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 399999999999999999998
No 113
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.45 E-value=0.00018 Score=56.48 Aligned_cols=46 Identities=24% Similarity=0.296 Sum_probs=36.0
Q ss_pred CCccchHHHHHHHHHhhhc--------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED--------------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~--------------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.+...+.. ....-+-++|++|+||||||+.+.+..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3478988888887776643 223468899999999999999998765
No 114
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.44 E-value=4.6e-05 Score=65.73 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=31.1
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
++++...+..++ +++|+|++|+|||||++.+.+..++.+|
T Consensus 359 l~~v~~~i~~G~--~~~ivG~sGsGKSTLl~~l~g~~~p~~G 398 (582)
T 3b60_A 359 LRNINLKIPAGK--TVALVGRSGSGKSTIASLITRFYDIDEG 398 (582)
T ss_dssp EEEEEEEECTTC--EEEEEECTTSSHHHHHHHHTTTTCCSEE
T ss_pred ccceeEEEcCCC--EEEEECCCCCCHHHHHHHHhhccCCCCC
Confidence 334444444577 9999999999999999999998776544
No 115
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.44 E-value=0.00014 Score=65.56 Aligned_cols=47 Identities=26% Similarity=0.391 Sum_probs=40.6
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...++|++..+..++..|......-+.++|++|+|||||++.+.+..
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999887655567899999999999999998765
No 116
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=97.44 E-value=8.1e-05 Score=64.45 Aligned_cols=29 Identities=34% Similarity=0.582 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.+++|+|++|+|||||++.|.+-..+.+|
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 38999999999999999999998877655
No 117
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.42 E-value=7e-05 Score=61.38 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=29.1
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++...+..++ +++|+|++|+|||||++.|.+-..
T Consensus 36 ~L~~vsl~i~~Ge--~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 36 ILENISFSISPGQ--RVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp SEEEEEEEECTTC--EEEEEESTTSSHHHHHHHHHTCSE
T ss_pred EeeceeEEEcCCC--EEEEECCCCChHHHHHHHHhCCCC
Confidence 3444444555677 999999999999999999998654
No 118
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.42 E-value=0.00022 Score=58.95 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.+|+|+|++|+|||||++.+.+...+.++
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g 196 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSER 196 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTS
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCC
Confidence 49999999999999999999988765434
No 119
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.41 E-value=0.00023 Score=57.55 Aligned_cols=46 Identities=22% Similarity=0.200 Sum_probs=36.7
Q ss_pred CCccchHHHHHHHHHhhhc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED------------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~------------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.|...+.. ...+-|-|+|++|+||||||+.+.+..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 4588988888888777642 234578999999999999999998764
No 120
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.40 E-value=9.5e-05 Score=60.03 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
..++|+|++|+|||||++.+.+...+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 489999999999999999999877654
No 121
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.40 E-value=0.00017 Score=58.46 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=25.7
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhhc-CCCC
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKFR-DTEH 202 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~~-~~~~ 202 (206)
.+. +++|+|++|+|||||++.+.+... +..|
T Consensus 214 ~G~--~~~lvG~sG~GKSTLln~L~g~~~~~~~G 245 (358)
T 2rcn_A 214 TGR--ISIFAGQSGVGKSSLLNALLGLQNEILTN 245 (358)
T ss_dssp TTS--EEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred CCC--EEEEECCCCccHHHHHHHHhccccccccC
Confidence 455 899999999999999999998765 5433
No 122
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.40 E-value=0.00022 Score=63.41 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=40.4
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...++|++..+..+...|......-+-++|++|+||||+|+.+.+..
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999977554567899999999999999998775
No 123
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.39 E-value=0.00027 Score=56.08 Aligned_cols=47 Identities=19% Similarity=0.060 Sum_probs=39.3
Q ss_pred CCCccchHHHHHHHHHhhhcCCC-eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNE-KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~-~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...++|.+..+..+..++..+.. +.+-+.|++|+||||+++.+.+..
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 35688999999999999987654 477788889999999999998765
No 124
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.37 E-value=0.00021 Score=56.60 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+++++|++|+|||||++.+. ...+.+|
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~~~G 193 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEELRTQ 193 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhCccc
Confidence 89999999999999999999 7655444
No 125
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.36 E-value=0.0003 Score=62.45 Aligned_cols=47 Identities=21% Similarity=0.303 Sum_probs=40.5
Q ss_pred CCCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 151 IGKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 151 ~~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...++|++..+..+...|......-+-++|++|+||||||+.+.+..
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45689999999999999887655578899999999999999998764
No 126
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.36 E-value=0.00019 Score=58.55 Aligned_cols=35 Identities=23% Similarity=0.073 Sum_probs=26.7
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
++++...+..+. +|+|+|++|+|||||++.+.+..
T Consensus 159 l~~~~~~i~~~~--~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 159 LKCMVYNIPKKR--YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHCCTTCC--EEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHhcccccCCCC--EEEEECCCCCCHHHHHHHHHhhc
Confidence 334444444455 99999999999999999998754
No 127
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.36 E-value=0.00028 Score=56.33 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=35.5
Q ss_pred CCccchHHHHHHHHHhhhc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED------------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~------------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.|...+.- ...+-|-++|++|+|||+||+.+++..
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc
Confidence 4578888887777765531 123578899999999999999999865
No 128
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.36 E-value=0.00017 Score=57.54 Aligned_cols=43 Identities=26% Similarity=0.276 Sum_probs=37.0
Q ss_pred CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++|.+..+..+...+..+. -+-++|++|+|||+||+.+.+..
T Consensus 28 ~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHT
T ss_pred ceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHh
Confidence 47898888888888887766 78899999999999999998754
No 129
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.35 E-value=0.00027 Score=52.92 Aligned_cols=37 Identities=24% Similarity=0.395 Sum_probs=28.6
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.+.+-..+......+|.|+|.+|+|||||+..+....
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3444444455667899999999999999999987664
No 130
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.34 E-value=0.00012 Score=53.69 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.-.|+|+|.+|+|||||++.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCC
Confidence 35899999999999999999987654
No 131
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.34 E-value=4.6e-05 Score=65.94 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=31.0
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
++++...+..++ +++|+|++|+|||||++.+.+..++.+|
T Consensus 360 l~~isl~i~~G~--~~~ivG~sGsGKSTLl~~l~g~~~p~~G 399 (595)
T 2yl4_A 360 FQDFSLSIPSGS--VTALVGPSGSGKSTVLSLLLRLYDPASG 399 (595)
T ss_dssp EEEEEEEECTTC--EEEEECCTTSSSTHHHHHHTTSSCCSEE
T ss_pred ccceEEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCc
Confidence 334444444577 9999999999999999999998776544
No 132
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.34 E-value=0.00021 Score=53.43 Aligned_cols=41 Identities=15% Similarity=0.306 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 157 LDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 157 ~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.....+.+...+......+|.|+|.+|+|||||+..+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455555555555677899999999999999999887653
No 133
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.33 E-value=0.00034 Score=56.43 Aligned_cols=47 Identities=19% Similarity=0.242 Sum_probs=35.9
Q ss_pred CCccchHHHHHH---HHHhhhcCCC--eEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISE---VWRCIEDHNE--KVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~---l~~~L~~~~~--~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|.+..... +...+..+.. +.+-++|++|+||||||+.+.+...
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred hhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468898876554 4555555443 4899999999999999999998764
No 134
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.30 E-value=0.00035 Score=55.65 Aligned_cols=46 Identities=24% Similarity=0.316 Sum_probs=36.3
Q ss_pred CCccchHHHHHHHHHhhh----------c--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIE----------D--HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~----------~--~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.|...+. . ...+-|-++|++|+|||+||+.+.+..
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 458899888888887762 1 123468999999999999999998865
No 135
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.30 E-value=0.00013 Score=55.92 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhc
Q 037945 176 IGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 176 I~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
+.|+|++|+|||||++.+.+...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998653
No 136
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.30 E-value=0.00015 Score=58.79 Aligned_cols=25 Identities=24% Similarity=0.390 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
+|+|+|++|+|||||++.+.+...+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcccC
Confidence 9999999999999999999876543
No 137
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.30 E-value=8e-05 Score=52.20 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=30.3
Q ss_pred CccchHHHHHHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 153 KTVGLDSIISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.++|....+.++...+.. ....-|-|+|+.|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHh
Confidence 356776666666666543 22225779999999999999998764
No 138
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.29 E-value=4.9e-05 Score=65.54 Aligned_cols=40 Identities=25% Similarity=0.427 Sum_probs=31.2
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
++++...+..++ +++|+|++|+|||||++.+.+..++.+|
T Consensus 357 l~~isl~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G 396 (578)
T 4a82_A 357 LKDINLSIEKGE--TVAFVGMSGGGKSTLINLIPRFYDVTSG 396 (578)
T ss_dssp EEEEEEEECTTC--EEEEECSTTSSHHHHHTTTTTSSCCSEE
T ss_pred eeeeEEEECCCC--EEEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 344444455577 9999999999999999999988776544
No 139
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.29 E-value=9.5e-05 Score=62.99 Aligned_cols=39 Identities=15% Similarity=0.110 Sum_probs=31.1
Q ss_pred HHHHHHHHH-hhhcCCCeEEEEEcCCCCcHHHHHHH--HHhhhc
Q 037945 158 DSIISEVWR-CIEDHNEKVIGLYGMGGVGKTTLLKK--LNNKFR 198 (206)
Q Consensus 158 ~~~~~~l~~-~L~~~~~~vI~IvG~~G~GKTTLa~~--i~~~~~ 198 (206)
...++++.. .+..++ +++|+|++|+|||||++. +.+-..
T Consensus 25 ~~~Ld~i~~G~i~~Ge--~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 25 IEGFDDISHGGLPIGR--STLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp CTTHHHHTTSSEETTS--EEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred chhHHHhcCCCCCCCe--EEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 346777776 777788 999999999999999999 445443
No 140
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.28 E-value=6.4e-05 Score=65.05 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=34.9
Q ss_pred CCCccch-HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 151 IGKTVGL-DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 151 ~~~~~g~-~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.+..|+. ...++++...+..++ +++|+|++|+|||||++.+.+..++.+|
T Consensus 360 v~~~y~~~~~~l~~isl~i~~G~--~~~ivG~sGsGKSTll~~l~g~~~p~~G 410 (598)
T 3qf4_B 360 VWFSYDKKKPVLKDITFHIKPGQ--KVALVGPTGSGKTTIVNLLMRFYDVDRG 410 (598)
T ss_dssp EECCSSSSSCSCCSEEEECCTTC--EEEEECCTTSSTTHHHHHHTTSSCCSEE
T ss_pred EEEECCCCCccccceEEEEcCCC--EEEEECCCCCcHHHHHHHHhcCcCCCCe
Confidence 3444542 223444444455577 9999999999999999999988776544
No 141
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.26 E-value=2.9e-05 Score=70.31 Aligned_cols=42 Identities=21% Similarity=0.416 Sum_probs=30.8
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHh
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~ 195 (206)
+..||....++++...+..++ +++|+|+||+|||||++.|.+
T Consensus 442 s~~yg~~~iL~~vsl~I~~Ge--~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 442 SLAYGAKILLNKTQLRLKRAR--RYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEETTEEEEEEEEEEEETTC--EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCEEeEecceEEEcCCC--EEEEECCCCCCHHHHHHHHhC
Confidence 444554333444444455677 999999999999999999985
No 142
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.26 E-value=0.0003 Score=54.23 Aligned_cols=45 Identities=20% Similarity=0.250 Sum_probs=31.6
Q ss_pred CccchHHHHHHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 153 KTVGLDSIISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++|.+..+..+...+.. ....-|-|+|+.|+|||+||+.+++..
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTS
T ss_pred cceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhc
Confidence 467877777766655543 222367799999999999999998764
No 143
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.25 E-value=0.00031 Score=59.46 Aligned_cols=43 Identities=16% Similarity=0.160 Sum_probs=37.6
Q ss_pred CccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 153 KTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++|.+..++.+...+..+. -|-++|++|+|||+||+.+.+..
T Consensus 23 ~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHH
Confidence 37899888888888888777 78999999999999999998765
No 144
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.25 E-value=0.00016 Score=57.15 Aligned_cols=27 Identities=44% Similarity=0.446 Sum_probs=23.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
..+|+++|++|+||||++..+.....+
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 349999999999999999999877653
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.23 E-value=0.00015 Score=57.37 Aligned_cols=28 Identities=29% Similarity=0.534 Sum_probs=23.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+++++|++|+|||||++.+.+...+.+|
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~~~G 198 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKLRVS 198 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC--
T ss_pred eEEEECCCCCcHHHHHHHhccccccccc
Confidence 8999999999999999999987766544
No 146
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.20 E-value=0.00019 Score=55.88 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhhhc
Q 037945 176 IGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 176 I~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
+.|+|++|+|||||++.|.+...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 89999999999999999998653
No 147
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.19 E-value=8.6e-05 Score=64.12 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=31.0
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
++++...+..++ +++|+|++|+|||||++.+.+..++.+|
T Consensus 359 l~~isl~i~~Ge--~~~ivG~sGsGKSTll~~l~g~~~~~~G 398 (587)
T 3qf4_A 359 LSGVNFSVKPGS--LVAVLGETGSGKSTLMNLIPRLIDPERG 398 (587)
T ss_dssp EEEEEEEECTTC--EEEEECSSSSSHHHHHHTTTTSSCCSEE
T ss_pred eeceEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCccCCCc
Confidence 344444445577 9999999999999999999988776544
No 148
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.19 E-value=7.8e-05 Score=67.57 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=30.4
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+++...+..++ +++|+|+||+|||||++.+.+...+.+|
T Consensus 690 ~dVSl~I~~Ge--ivaIiGpNGSGKSTLLklLaGll~P~sG 728 (986)
T 2iw3_A 690 TDINFQCSLSS--RIAVIGPNGAGKSTLINVLTGELLPTSG 728 (986)
T ss_dssp EEEEEEEETTC--EEEECSCCCHHHHHHHHHHTTSSCCSEE
T ss_pred eccEEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 33444445577 9999999999999999999998766544
No 149
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.19 E-value=0.00035 Score=53.71 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..+|.++|++|+||||+++.+....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998764
No 150
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.19 E-value=0.00049 Score=54.00 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..+|.|.|++|+|||||++.+....
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999997654
No 151
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.19 E-value=0.00072 Score=52.33 Aligned_cols=27 Identities=26% Similarity=0.172 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
....-+-++|++|+||||||+.+.+..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 345678899999999999999998864
No 152
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.18 E-value=0.00061 Score=55.68 Aligned_cols=46 Identities=22% Similarity=0.211 Sum_probs=37.0
Q ss_pred CCccchHHHHHHHHHhhhc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED------------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~------------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.|...+.. ...+-|-|+|+.|+|||+||+.|.+..
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999888888877731 123578999999999999999998764
No 153
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.18 E-value=0.00028 Score=55.93 Aligned_cols=28 Identities=43% Similarity=0.501 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
..+|+|+|++|+||||++..+.....+.
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~ 131 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDE 131 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhc
Confidence 4599999999999999999998876543
No 154
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.17 E-value=0.00026 Score=54.63 Aligned_cols=47 Identities=26% Similarity=0.253 Sum_probs=32.0
Q ss_pred CCccchHHHHHHHHHhhh---c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIE---D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~---~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|.+..++.+...+. . ...+-+-++|++|+||||||+.+++...
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 457777665555544433 1 1122477999999999999999998653
No 155
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.17 E-value=0.00016 Score=58.87 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
.+|+|+|++|+|||||++.+.+...+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 39999999999999999999886554
No 156
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.16 E-value=0.00053 Score=55.44 Aligned_cols=44 Identities=23% Similarity=0.242 Sum_probs=34.3
Q ss_pred ccchHHHHHHHHHhhh-------------c--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 154 TVGLDSIISEVWRCIE-------------D--HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~-------------~--~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
++|.+..++.+...+. . ....-|.++|++|+||||+|+.|.+..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 6788888887777662 1 123478999999999999999998765
No 157
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.00078 Score=55.90 Aligned_cols=47 Identities=30% Similarity=0.347 Sum_probs=35.9
Q ss_pred CCccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..+.|.+..++.|...+. . ...+=|-++||+|+|||+||+.|.+...
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 347788887777766542 1 2345789999999999999999998763
No 158
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.14 E-value=0.00053 Score=55.42 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=35.6
Q ss_pred CCccchHHHHHHHHHhhhc------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED------------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~------------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.|...+.. ...+-|-++|++|+||||||+.+++..
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 4588988888888776631 112358899999999999999999875
No 159
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.12 E-value=0.00068 Score=56.48 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=36.4
Q ss_pred CCccchHHHHHHHHHhhh------------cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIE------------DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~------------~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.|...+. ....+-|-++|++|+|||+||+.+++..
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 458898888888877652 1223578999999999999999999865
No 160
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.12 E-value=0.00094 Score=53.03 Aligned_cols=38 Identities=32% Similarity=0.339 Sum_probs=27.8
Q ss_pred HHHHHHHhhhcC--CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 160 IISEVWRCIEDH--NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 160 ~~~~l~~~L~~~--~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
....+...+... ....+-|+|++|+|||||++.+++..
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 334444444443 34579999999999999999999865
No 161
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.00088 Score=55.51 Aligned_cols=47 Identities=32% Similarity=0.467 Sum_probs=35.7
Q ss_pred CCccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..+.|.+..++.|...+. . ...+=|-++||+|+|||+||+.|.+...
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457788887777766543 1 2244689999999999999999998763
No 162
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.00097 Score=55.36 Aligned_cols=47 Identities=34% Similarity=0.416 Sum_probs=35.3
Q ss_pred CCccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..+.|.+..++.|...+. . ...+=|-++||+|+|||+||+.|.+...
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 446788777776665543 1 2346789999999999999999998763
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.06 E-value=6.2e-05 Score=57.15 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
+++|+|++|+|||||++.|+.-..+.+|
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G 56 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLT 56 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCC
Confidence 6789999999999999999988776544
No 164
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.05 E-value=0.00011 Score=58.23 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
+++|+|++|+|||||++.+.+...+.
T Consensus 175 ~~~lvG~sG~GKSTLln~L~g~~~~~ 200 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLNAISPELGLR 200 (307)
T ss_dssp EEEEEESHHHHHHHHHHHHCC-----
T ss_pred EEEEECCCCCCHHHHHHHhccccccc
Confidence 99999999999999999998766543
No 165
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.99 E-value=0.00063 Score=51.20 Aligned_cols=27 Identities=44% Similarity=0.506 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|-|.|++|+||||.++.+.....
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 456999999999999999999987653
No 166
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.99 E-value=0.0004 Score=54.07 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=24.3
Q ss_pred hhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
+..+. ++.|+|++|+|||||+..+.....
T Consensus 27 l~~G~--i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 27 MVAGT--VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EETTS--EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCC--EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 44566 999999999999999999887543
No 167
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.98 E-value=0.0011 Score=53.78 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.-+-++|++|+||||||+.+.+..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998765
No 168
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.97 E-value=0.0013 Score=50.11 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...+|.|.|+.|+||||+++.+....
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997654
No 169
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0012 Score=54.23 Aligned_cols=47 Identities=32% Similarity=0.396 Sum_probs=35.1
Q ss_pred CCccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..+.|.+..++.|...+. . ...+=|-++||+|+|||+||+.|.+...
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~ 207 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTD 207 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence 346788877776665543 1 2245688999999999999999998763
No 170
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.95 E-value=0.00059 Score=48.17 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~ 195 (206)
.+..|+|++|+|||||+..|+-
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4889999999999999998763
No 171
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.93 E-value=0.00055 Score=53.81 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...+-++|++|+|||+||+.|++..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999876
No 172
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.0015 Score=54.45 Aligned_cols=47 Identities=28% Similarity=0.360 Sum_probs=35.8
Q ss_pred CCccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..+.|.+..++.|.+.+. . ...+=|-++|++|+|||+||+.|.+...
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 357788887777766542 1 2356788999999999999999998763
No 173
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.92 E-value=0.0011 Score=55.11 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=27.3
Q ss_pred HHHHHHhhhcCC-CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 161 ISEVWRCIEDHN-EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 161 ~~~l~~~L~~~~-~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...+........ ..-+.|+|++|+|||||++.|++..
T Consensus 117 ~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 117 YHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp HHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 333444443332 5689999999999999999999865
No 174
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.92 E-value=0.00028 Score=61.22 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
++..|+|+|++|+|||||++.|.+-..|
T Consensus 44 ~lp~iaIvG~nGsGKSTLL~~I~Gl~~P 71 (608)
T 3szr_A 44 ALPAIAVIGDQSSGKSSVLEALSGVALP 71 (608)
T ss_dssp CCCCEECCCCTTSCHHHHHHHHHSCC--
T ss_pred cCCeEEEECCCCChHHHHHHHHhCCCCC
Confidence 3567999999999999999999987655
No 175
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.92 E-value=0.0014 Score=56.00 Aligned_cols=46 Identities=24% Similarity=0.433 Sum_probs=33.7
Q ss_pred CccchHHHHHHHHHhhh------cCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 153 KTVGLDSIISEVWRCIE------DHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~------~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++|.+.....+...+. +..-..+.++|++|+||||||+.|.+...
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~ 133 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG 133 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 47787776666544332 11234899999999999999999988763
No 176
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.91 E-value=0.00068 Score=54.06 Aligned_cols=27 Identities=37% Similarity=0.588 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
..+|+|+|++|+||||++..+......
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 459999999999999999998876544
No 177
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.90 E-value=0.00046 Score=55.15 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=33.4
Q ss_pred CCccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|.+..+..+...+......-+-++|++|+|||+||+.+.+...
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred hhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 45788877665544444332222488999999999999999988653
No 178
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.89 E-value=0.0013 Score=55.23 Aligned_cols=46 Identities=28% Similarity=0.319 Sum_probs=32.8
Q ss_pred CCccchHHHHHHHHHhh---hcC---------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCI---EDH---------NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L---~~~---------~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.+...+ ... -.+-|.++|++|+||||||+.|.+..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45788777665555443 221 12358899999999999999999865
No 179
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.89 E-value=0.00068 Score=53.42 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
..+|+|+|++|+||||++..+......
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 349999999999999999999877654
No 180
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.88 E-value=0.00047 Score=58.99 Aligned_cols=27 Identities=26% Similarity=0.477 Sum_probs=24.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
.+|.|+|++|+|||||++.+.+...+.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCChHHHHHHHHHHhhccc
Confidence 499999999999999999999887654
No 181
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.87 E-value=0.0017 Score=54.31 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=34.9
Q ss_pred CCccchHHHHHHHHH---hhhcCC--CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWR---CIEDHN--EKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~---~L~~~~--~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|.+..++.+.. .+..+. .+-+-++|++|+||||||+.+.+...
T Consensus 37 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 37 SGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 558898877665443 343432 24688999999999999999998764
No 182
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.86 E-value=0.00072 Score=60.51 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=33.7
Q ss_pred CCccchHHHHHHHHHhhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.|..++.. ....-|.++|++|+||||||+.|.+..
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4477876666666555431 223479999999999999999998764
No 183
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.85 E-value=0.0018 Score=54.80 Aligned_cols=46 Identities=24% Similarity=0.294 Sum_probs=32.3
Q ss_pred CCccchHHHHHHHH---HhhhcC---------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVW---RCIEDH---------NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~---~~L~~~---------~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..+..+. ..+... -.+=+.|+|++|+|||||++.|.+..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45788776555444 333321 01248999999999999999999865
No 184
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.84 E-value=0.00071 Score=52.87 Aligned_cols=23 Identities=35% Similarity=0.694 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLN 194 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~ 194 (206)
...+|+|.|+.|+||||+++.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999986
No 185
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.0021 Score=53.10 Aligned_cols=47 Identities=36% Similarity=0.476 Sum_probs=35.1
Q ss_pred CCccchHHHHHHHHHhhh----c---------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIE----D---------HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~----~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..+.|.+..++.|.+.+. . .-.+=|-++|++|+|||+||+.|.+...
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 346678777776665543 1 2245799999999999999999998764
No 186
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.84 E-value=0.00051 Score=56.77 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.|+|+|++|+|||||++.+++...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 469999999999999999998654
No 187
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0019 Score=46.88 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
....|.|+|..|+|||||++.+.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999988754
No 188
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.81 E-value=0.0013 Score=54.75 Aligned_cols=47 Identities=23% Similarity=0.292 Sum_probs=35.0
Q ss_pred CCccchHHHHHHHHHhhhc--------------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIED--------------HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~--------------~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|.+..+..+...+.. -..+-|-++|++|+||||+|+.+.+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4578888777777655522 1234688999999999999999987653
No 189
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.81 E-value=0.00042 Score=65.00 Aligned_cols=41 Identities=17% Similarity=0.342 Sum_probs=32.4
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
.++++...+..++ +++|+|++|+|||||++.+.+..++.+|
T Consensus 1048 ~l~~vsl~i~~Ge--~v~ivG~sGsGKSTl~~~l~g~~~p~~G 1088 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQ--TLALVGSSGCGKSTVVQLLERFYDPMAG 1088 (1284)
T ss_dssp SBSSCCEEECSSS--EEEEECSSSTTHHHHHHHHTTSSCCSEE
T ss_pred eecceeEEEcCCC--EEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 3445555555677 9999999999999999999998776544
No 190
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.80 E-value=0.00072 Score=54.34 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
....+|+|+|.+|+|||||++.+.+..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 455699999999999999999987653
No 191
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.79 E-value=0.0016 Score=54.10 Aligned_cols=43 Identities=26% Similarity=0.489 Sum_probs=33.0
Q ss_pred cchHHHHHHHHHhhhc-----------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 155 VGLDSIISEVWRCIED-----------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 155 ~g~~~~~~~l~~~L~~-----------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.|.+..++.|...+.+ .+...|+|+|.+|+|||||++.+.+..
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCc
Confidence 4667777777766642 123589999999999999999998764
No 192
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.77 E-value=0.001 Score=53.71 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..+|+|+|++|+|||||.+.+.+..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5599999999999999999998753
No 193
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.76 E-value=0.0028 Score=51.18 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=27.5
Q ss_pred HHHHHHhhh--cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 161 ISEVWRCIE--DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 161 ~~~l~~~L~--~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...+...+. .+...+|+|+|.+|+|||||+..+....
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 334444444 3567799999999999999999886553
No 194
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.72 E-value=0.0018 Score=53.71 Aligned_cols=26 Identities=38% Similarity=0.471 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..+|.++|++|+||||++..+.....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999876554
No 195
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.72 E-value=0.0021 Score=50.94 Aligned_cols=41 Identities=27% Similarity=0.428 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhcC---CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 158 DSIISEVWRCIEDH---NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 158 ~~~~~~l~~~L~~~---~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
...+..+..++... ...-+-++|++|+|||+||+.+++...
T Consensus 134 ~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp HHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 33455555566541 135788999999999999999988653
No 196
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.72 E-value=0.00092 Score=53.94 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=23.1
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.+. ++.|+|++|+|||||++.+....
T Consensus 130 ~G~--i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQA--ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSE--EEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCe--EEEEECCCCCCHHHHHHHHHHHh
Confidence 455 99999999999999999998765
No 197
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.70 E-value=0.0024 Score=53.85 Aligned_cols=46 Identities=24% Similarity=0.331 Sum_probs=35.4
Q ss_pred CCccchHHHHHHHHHhhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.|...+.. ....-+-|+|++|+|||+||+.|.+..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3478888888777766542 233468899999999999999998764
No 198
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.69 E-value=0.0011 Score=49.00 Aligned_cols=40 Identities=23% Similarity=0.076 Sum_probs=21.8
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 158 DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 158 ~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
....+++.........-.|.|+|..|+|||||++.+.+..
T Consensus 15 ~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 15 VPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ---------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3344444444444555689999999999999999887653
No 199
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.68 E-value=0.0005 Score=64.46 Aligned_cols=40 Identities=15% Similarity=0.308 Sum_probs=31.3
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
++++...+..++ +++|+|++|+|||||++.+.+..++.+|
T Consensus 406 L~~isl~i~~G~--~~~ivG~sGsGKSTl~~ll~g~~~~~~G 445 (1284)
T 3g5u_A 406 LKGLNLKVKSGQ--TVALVGNSGCGKSTTVQLMQRLYDPLDG 445 (1284)
T ss_dssp EEEEEEEECTTC--EEEEECCSSSSHHHHHHHTTTSSCCSEE
T ss_pred eecceEEEcCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 444444455577 9999999999999999999988776544
No 200
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.67 E-value=0.0032 Score=52.33 Aligned_cols=26 Identities=35% Similarity=0.577 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..+|.++|++|+||||++..+.....
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 56999999999999999998876554
No 201
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.64 E-value=0.0012 Score=50.09 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
....|+|+|.+|+|||||++.+.+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 455899999999999999999988654
No 202
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.62 E-value=0.0029 Score=47.09 Aligned_cols=37 Identities=8% Similarity=0.148 Sum_probs=26.3
Q ss_pred HHHHHHhhhc-CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 161 ISEVWRCIED-HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 161 ~~~l~~~L~~-~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+..+..++.. ..-+-+.|+|++|+||||+|..+.+..
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444443 122379999999999999998888765
No 203
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.60 E-value=0.00057 Score=64.29 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=33.5
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCCC
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEHD 203 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~~ 203 (206)
.++++...+..++ .|+|||++|+|||||++.+.+-.+|.+|.
T Consensus 1094 VL~~isl~I~~Ge--~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1135 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQ--TLALVGPSGCGKSTVVALLERFYDTLGGE 1135 (1321)
T ss_dssp SEEEEEEEECTTC--EEEEECSTTSSTTSHHHHHTTSSCCSSSE
T ss_pred cccceeEEECCCC--EEEEECCCCChHHHHHHHHhcCccCCCCE
Confidence 3445555555677 99999999999999999999988776553
No 204
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.54 E-value=0.0011 Score=58.16 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=21.9
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
++++...+..++ +++|+|+||+|||||+
T Consensus 34 L~~vsl~i~~Ge--~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 34 LKNIDVEIPRGK--LVVLTGLSGSGKSSLA 61 (670)
T ss_dssp CCSEEEEEETTS--EEEEECSTTSSHHHHH
T ss_pred eeccEEEECCCC--EEEEECCCCCCHHHHh
Confidence 334444455677 9999999999999997
No 205
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.52 E-value=0.0015 Score=52.33 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
++|.|+|+.|+|||||+..+....
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 589999999999999999998765
No 206
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.48 E-value=0.0018 Score=51.50 Aligned_cols=25 Identities=40% Similarity=0.736 Sum_probs=20.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHh
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~ 195 (206)
++.+||+|.|-||+||||.+-.+.-
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 4578999999999999998876543
No 207
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.47 E-value=0.0019 Score=53.39 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
....+|.|+|++|+||||+++.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 345699999999999999999987654
No 208
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.46 E-value=0.00097 Score=62.75 Aligned_cols=40 Identities=18% Similarity=0.286 Sum_probs=31.4
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCCCC
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDTEH 202 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~~~ 202 (206)
++++...+..++ .++|||+.|+|||||++.+.+..++.+|
T Consensus 434 L~~isl~i~~G~--~vaivG~sGsGKSTll~ll~~~~~~~~G 473 (1321)
T 4f4c_A 434 LRGMNLRVNAGQ--TVALVGSSGCGKSTIISLLLRYYDVLKG 473 (1321)
T ss_dssp EEEEEEEECTTC--EEEEEECSSSCHHHHHHHHTTSSCCSEE
T ss_pred eeceEEeecCCc--EEEEEecCCCcHHHHHHHhccccccccC
Confidence 344444455577 9999999999999999999998877544
No 209
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=96.44 E-value=0.00089 Score=58.68 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=20.6
Q ss_pred hhcCCCeEEEEEcCCCCcHHHHHHHHH
Q 037945 168 IEDHNEKVIGLYGMGGVGKTTLLKKLN 194 (206)
Q Consensus 168 L~~~~~~vI~IvG~~G~GKTTLa~~i~ 194 (206)
+..++ +++|+|++|+|||||++.+.
T Consensus 345 I~~Ge--~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 345 IPLGT--FVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EETTS--EEEEECSTTSSHHHHHTTTH
T ss_pred ecCCC--EEEEEeeCCCCHHHHHHHHH
Confidence 33466 99999999999999998653
No 210
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.42 E-value=0.006 Score=49.29 Aligned_cols=24 Identities=25% Similarity=0.414 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
++.|.|++|+|||||+..+.....
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999887643
No 211
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.42 E-value=0.0018 Score=53.29 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.0
Q ss_pred hhcCCCeEEEEEcCCCCcHHHHHHHHH
Q 037945 168 IEDHNEKVIGLYGMGGVGKTTLLKKLN 194 (206)
Q Consensus 168 L~~~~~~vI~IvG~~G~GKTTLa~~i~ 194 (206)
+..+. ++.|+|++|+|||||+..+.
T Consensus 175 I~~Ge--i~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGS--ITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTS--EEEEEESTTSSHHHHHHHHH
T ss_pred cCCCc--EEEEEcCCCCChHHHHHHHH
Confidence 33456 99999999999999999664
No 212
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.41 E-value=0.0025 Score=52.71 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
..+|+++|++|+||||++..+.......
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3599999999999999999998876543
No 213
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.41 E-value=0.0014 Score=51.69 Aligned_cols=26 Identities=42% Similarity=0.503 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..+|+++|++|+||||++..+.....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45999999999999999999887654
No 214
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=96.40 E-value=0.0018 Score=47.22 Aligned_cols=29 Identities=34% Similarity=0.400 Sum_probs=23.2
Q ss_pred hhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
+.....-.|.|+|.+|+|||||++.+.+.
T Consensus 24 ~~~~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 24 IFGKKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TTTTSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred hccCCccEEEEECCCCCCHHHHHHHHHhC
Confidence 33444568999999999999999998653
No 215
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.38 E-value=0.0026 Score=46.36 Aligned_cols=26 Identities=31% Similarity=0.574 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
....|.|+|..|+|||||++.+.+..
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 34579999999999999999987753
No 216
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=96.38 E-value=0.00061 Score=56.00 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+++|+|+||+|||||++.|+.-.
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 99999999999999999996544
No 217
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.35 E-value=0.0024 Score=54.30 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=25.3
Q ss_pred hcCCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 169 EDHNEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 169 ~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
..+. +++|+|++|+|||||++.+++...+.
T Consensus 279 ~~G~--i~~i~G~~GsGKSTLl~~l~g~~~~~ 308 (525)
T 1tf7_A 279 FKDS--IILATGATGTGKTLLVSRFVENACAN 308 (525)
T ss_dssp ESSC--EEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred CCCc--EEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 3456 99999999999999999998876553
No 218
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.34 E-value=0.0021 Score=57.08 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.+++|+|+||+|||||++.|.+-.
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhhh
Confidence 399999999999999999998754
No 219
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.33 E-value=0.0022 Score=47.43 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...|.|+|.+|+|||||++.+.+..
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998764
No 220
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=96.31 E-value=0.0027 Score=47.61 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
....|.|+|.+|+|||||++.+.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999998765
No 221
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.31 E-value=0.0023 Score=57.15 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.+++|+|+||+|||||++.|.+-
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 49999999999999999998764
No 222
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.29 E-value=0.0021 Score=52.10 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+.++|+|+|.+|+|||||++.+.+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence 45679999999999999999998754
No 223
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.28 E-value=0.0026 Score=46.50 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.....|.|+|..|+|||||++.+.+..
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 334589999999999999999987653
No 224
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.27 E-value=0.0073 Score=50.40 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=32.1
Q ss_pred chHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 156 GLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 156 g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
+....+..+...+.+++ ..+.|.|.+|+||||++..+.....
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34556677777776644 3899999999999999998876653
No 225
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.26 E-value=0.0074 Score=53.56 Aligned_cols=46 Identities=24% Similarity=0.386 Sum_probs=36.0
Q ss_pred CCccchHHHHHHHHHhhhc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED---------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.+...+.. .....+-++|++|+|||+||+.+.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3478988888877777763 112369999999999999999998765
No 226
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.26 E-value=0.0059 Score=51.65 Aligned_cols=24 Identities=42% Similarity=0.512 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
..+|+|+|.+|+||||++..+...
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 569999999999999999998754
No 227
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.25 E-value=0.0018 Score=52.49 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
+-.-.|+|+|.+|+|||||++.+++.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTC
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCC
Confidence 33345799999999999999998764
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.23 E-value=0.0019 Score=53.60 Aligned_cols=25 Identities=44% Similarity=0.535 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..+|+|+|++|+||||++..+....
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4599999999999999999887654
No 229
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=96.20 E-value=0.0027 Score=47.12 Aligned_cols=24 Identities=38% Similarity=0.526 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.-.|.|+|.+|+|||||++.+.+.
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 347999999999999999998764
No 230
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.16 E-value=0.003 Score=50.90 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=26.1
Q ss_pred HHHHHHH--hhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 160 IISEVWR--CIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 160 ~~~~l~~--~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++.+.. -+..+. ++.|.|++|+|||||+..+....
T Consensus 48 ~LD~~Lg~GGl~~G~--iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 48 SLDVALGIGGLPRGR--VIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp HHHHHTSSSSEETTS--EEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCe--EEEEECCCCCCHHHHHHHHHHHH
Confidence 4444433 333455 99999999999999998887543
No 231
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.13 E-value=0.0046 Score=51.57 Aligned_cols=37 Identities=14% Similarity=0.174 Sum_probs=29.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++..-+..++ ++.|.|.+|+|||||+..+.....
T Consensus 192 ~LD~~~gGl~~G~--liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 192 ELDRMTSGFQRSD--LIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp HHHHHHSSBCTTC--EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCC--EEEEECCCCCCHHHHHHHHHHHHH
Confidence 4566665566677 999999999999999999877653
No 232
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=96.13 E-value=0.0034 Score=46.87 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~ 195 (206)
...|.|+|.+|+|||||++.+.+
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999874
No 233
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.12 E-value=0.0034 Score=51.26 Aligned_cols=26 Identities=19% Similarity=0.151 Sum_probs=22.8
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++ .++|+|++|+|||||++.|.+..
T Consensus 173 rGQ--r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 173 RGQ--RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTC--EEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCc--EEEEecCCCCChhHHHHHHHHHH
Confidence 467 99999999999999999987653
No 234
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.12 E-value=0.0039 Score=49.01 Aligned_cols=29 Identities=38% Similarity=0.681 Sum_probs=22.1
Q ss_pred hcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 169 EDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 169 ~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.....++|+|+|-||+||||++-.+....
T Consensus 37 ~~~~~~vI~v~~KGGvGKTT~a~nLA~~L 65 (307)
T 3end_A 37 KITGAKVFAVYGKGGIGKSTTSSNLSAAF 65 (307)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCceEEEEECCCCccHHHHHHHHHHHH
Confidence 33567799999999999999998776543
No 235
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=96.11 E-value=0.0034 Score=46.05 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.-.|.|+|..|+|||||++.+.+..
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCC
Confidence 4589999999999999999987643
No 236
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.10 E-value=0.0041 Score=49.51 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
++-|+|++|+|||||+..+...
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 6789999999999999998764
No 237
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.09 E-value=0.0046 Score=51.35 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.++|.+|+||||++-.+....
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35699999999999999999887544
No 238
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.05 E-value=0.0077 Score=46.29 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
....|+|+|..|+|||||+..+.+..
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998754
No 239
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=96.04 E-value=0.0044 Score=46.04 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
-.|.|+|..|+|||||++.+.+.
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 47999999999999999998765
No 240
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.03 E-value=0.0052 Score=55.30 Aligned_cols=45 Identities=33% Similarity=0.387 Sum_probs=35.1
Q ss_pred CccchHHHHHHHHHhhhcC---------CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 153 KTVGLDSIISEVWRCIEDH---------NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 153 ~~~g~~~~~~~l~~~L~~~---------~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++|.+..+..+...+... ....+-++|++|+|||+||+.+.+..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3678888777777766531 12478999999999999999998765
No 241
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=95.01 E-value=0.0011 Score=48.75 Aligned_cols=29 Identities=28% Similarity=0.252 Sum_probs=22.9
Q ss_pred hhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
+.....-.|.|+|..|+|||||++.+.+.
T Consensus 25 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 34444557999999999999999877654
No 242
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.02 E-value=0.0021 Score=47.75 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
....|+|+|..|+|||||++.+.+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 45589999999999999999998764
No 243
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=95.97 E-value=0.0018 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.548 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
..|+|+|++|+|||||++.+.+.
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSS
T ss_pred CEEEEECCCCCcHHHHHHHHHcC
Confidence 37999999999999999999875
No 244
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.96 E-value=0.0089 Score=46.13 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...|.++|..|+|||||++.+.+..
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999998754
No 245
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.96 E-value=0.0051 Score=46.82 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.|.|.|+.|+||||+++.+....
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999987654
No 246
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.95 E-value=0.004 Score=50.26 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
....|+++|.+|+|||||++.+.+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999987653
No 247
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.94 E-value=0.003 Score=54.61 Aligned_cols=44 Identities=16% Similarity=0.093 Sum_probs=30.3
Q ss_pred ccchHHHHHHHHHhhhcCCCe-----------EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 154 TVGLDSIISEVWRCIEDHNEK-----------VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~-----------vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
++|.+..+..+...|..+..+ -|-++|++|+|||+||+.+.+..
T Consensus 297 I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 297 IYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp TSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred hcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 566665555554444444211 48899999999999999987654
No 248
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.91 E-value=0.0085 Score=45.21 Aligned_cols=32 Identities=31% Similarity=0.450 Sum_probs=24.4
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHH
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLN 194 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~ 194 (206)
.++++..+.+++ .+.|+|+.|+||||++..+.
T Consensus 66 q~~~i~~i~~g~--~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 66 ESEILEAISQNS--VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHHHHHHCS--EEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCC--EEEEEeCCCCCcHHhHHHHH
Confidence 345555666677 89999999999998776543
No 249
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.91 E-value=0.0099 Score=53.02 Aligned_cols=26 Identities=35% Similarity=0.484 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.+=|-++|++|+|||+||+.|.+...
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998653
No 250
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.87 E-value=0.013 Score=52.00 Aligned_cols=46 Identities=24% Similarity=0.249 Sum_probs=35.2
Q ss_pred CCccchHHHHHHHHHhhhc---------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 152 GKTVGLDSIISEVWRCIED---------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~---------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..++|.+..++.+...+.. .....+-++|++|+|||+||+.+.+..
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 3477888888777766653 123378999999999999999998765
No 251
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.86 E-value=0.0082 Score=46.36 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=25.9
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+.|...+...- ..++++|.+|+|||||++.+.+..
T Consensus 89 ~~L~~~l~~~~-~~v~~vG~~~vGKSslin~l~~~~ 123 (262)
T 3cnl_A 89 VLLKKLSFDRL-ARVLIVGVPNTGKSTIINKLKGKR 123 (262)
T ss_dssp HHHHHHCCCTT-CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred HHHHHHHHHhh-hheEEeCCCCCCHHHHHHHHhccc
Confidence 34444444321 489999999999999999998754
No 252
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.84 E-value=0.013 Score=45.78 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...|+++|.+|+|||||++.+.+..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CceEEEEecCCCchHHHHHHHhcCc
Confidence 3479999999999999999998754
No 253
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.83 E-value=0.0079 Score=47.67 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=27.9
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++++..-+..++ ++-|.|.+|+|||||+..+....
T Consensus 57 ~LD~~lgGl~~G~--l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 57 ELDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHHSSBCTTC--EEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCc--EEEEEeCCCCCHHHHHHHHHHHH
Confidence 4555554566677 99999999999999999887543
No 254
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.83 E-value=0.0062 Score=51.77 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=21.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..+|.++|++|+||||+++.+....
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999986543
No 255
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.82 E-value=0.0037 Score=56.59 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~ 195 (206)
.+++|.|+||+|||||++.|..
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHH
Confidence 4999999999999999998754
No 256
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.80 E-value=0.013 Score=49.62 Aligned_cols=27 Identities=22% Similarity=0.032 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
...+|.+.|+.|+||||+++.+.....
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999988764
No 257
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.78 E-value=0.005 Score=55.82 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 037945 174 KVIGLYGMGGVGKTTLLKKL 193 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i 193 (206)
.+++|.|+||+|||||++.|
T Consensus 663 ~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 49999999999999999998
No 258
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=95.78 E-value=0.013 Score=48.54 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=34.4
Q ss_pred cchHHHHHHHHHhhhc-------CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 155 VGLDSIISEVWRCIED-------HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 155 ~g~~~~~~~l~~~L~~-------~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.|.+..++.+...+.+ ++...|+|+|.+|+|||||++.+.+..
T Consensus 150 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 150 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp BTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4667788888877753 235689999999999999999998754
No 259
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.78 E-value=0.0064 Score=50.93 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...+|.++|+.|+||||+++.+....
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999987653
No 260
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.74 E-value=0.006 Score=45.19 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
+.|.|.|+.|+||||||..+...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999988654
No 261
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.71 E-value=0.0039 Score=55.78 Aligned_cols=47 Identities=28% Similarity=0.394 Sum_probs=35.3
Q ss_pred CCccchHHHHHHHHHhhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|.+...+.+...+.- .....+.++|++|+||||||+.+.+...
T Consensus 477 ~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred cccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 4567877777777766541 1234688999999999999999998763
No 262
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.68 E-value=0.011 Score=49.43 Aligned_cols=26 Identities=42% Similarity=0.732 Sum_probs=22.4
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++ .++|+|.+|+|||||++.+....
T Consensus 150 kGq--~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 150 KGG--KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TTC--EEEEECCSSSCHHHHHHHHHHHH
T ss_pred cCC--EEEEECCCCCCccHHHHHHHhhh
Confidence 356 89999999999999999887654
No 263
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.66 E-value=0.0069 Score=48.84 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.+..|+|+|..|+|||||++.+.+.
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3559999999999999999999884
No 264
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.59 E-value=0.0068 Score=55.53 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.+++|.|+||+|||||++.| +-
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i-Gl 811 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA-GL 811 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH-HH
T ss_pred cEEEEECCCCCChHHHHHHH-HH
Confidence 59999999999999999998 54
No 265
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.42 E-value=0.029 Score=43.39 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=26.6
Q ss_pred HHHHHhhhcC-C-CeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 162 SEVWRCIEDH-N-EKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 162 ~~l~~~L~~~-~-~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.-+..++... . .+-|-++|++|+|||+|+..|.+.
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3355555543 2 347999999999999999999875
No 266
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.36 E-value=0.011 Score=47.05 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=22.7
Q ss_pred hhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
+..+. ++.|+|++|+|||||+..+...
T Consensus 104 l~~G~--i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 104 IETRT--MTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp EETTS--EEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCc--EEEEECCCCCCHhHHHHHHHHH
Confidence 33455 9999999999999999988765
No 267
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.33 E-value=0.0032 Score=56.40 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHH-HHh
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKK-LNN 195 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~-i~~ 195 (206)
++ +++|+|.+|+|||||++. +++
T Consensus 523 Ge--iv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 523 GV--MTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp SS--EEEEECCTTSSHHHHCCCCCHH
T ss_pred CC--EEEEEcCCCcCHHHHHHHHHHH
Confidence 55 999999999999999996 553
No 268
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.31 E-value=0.012 Score=51.04 Aligned_cols=26 Identities=31% Similarity=0.422 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.-.+|.+.|+.|+||||+++.+....
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999997764
No 269
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.29 E-value=0.015 Score=46.67 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=28.2
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++++..-+..++ ++.|.|.+|+|||||+..+....
T Consensus 35 ~LD~~~gGl~~G~--LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 35 QLDNYTSGFNKGS--LVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp HHHHHHCSBCTTC--EEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCCc--EEEEEeCCCCCHHHHHHHHHHHH
Confidence 4555555566677 99999999999999999886653
No 270
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.25 E-value=0.0057 Score=55.52 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHH
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKL 193 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i 193 (206)
++ +++|+|.+|+|||||++.+
T Consensus 668 Ge--ivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 668 GV--LTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp SS--EEEEECSTTSSHHHHHTTT
T ss_pred CC--EEEEEcCCCCCHHHHHHHH
Confidence 55 9999999999999999985
No 271
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.15 E-value=0.016 Score=48.19 Aligned_cols=36 Identities=8% Similarity=0.089 Sum_probs=27.7
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++++..-+..++ ++.|.|.+|+|||||+..+....
T Consensus 189 ~LD~~lgGl~~G~--l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 189 ELDQLIGTLGPGS--LNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHCCCCTTC--EEEEEECTTSCHHHHHHHHHHHH
T ss_pred hhhhhcCCcCCCc--EEEEEeCCCCCHHHHHHHHHHHH
Confidence 4555554455566 99999999999999999887654
No 272
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.13 E-value=0.014 Score=50.21 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
..+|.|.|+.|+||||+++.+....
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999987764
No 273
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.05 E-value=0.034 Score=45.04 Aligned_cols=40 Identities=20% Similarity=0.409 Sum_probs=30.2
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
-.|.+..++.+...+. + ..|+++|..|+|||||.+.+.+.
T Consensus 146 g~gi~~L~~~I~~~~~-~--~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 146 GIGMAKVMEAINRYRE-G--GDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TBTHHHHHHHHHHHHT-T--SCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhcc-c--CcEEEEcCCCCchHHHHHHHHhh
Confidence 3456666666655443 3 36999999999999999999986
No 274
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.05 E-value=0.017 Score=46.28 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
++.|+|++|+|||||+..+...
T Consensus 124 i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999988765
No 275
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=95.02 E-value=0.018 Score=47.97 Aligned_cols=37 Identities=14% Similarity=0.200 Sum_probs=28.4
Q ss_pred HHHHHHHh--hhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 160 IISEVWRC--IEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 160 ~~~~l~~~--L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.++.+... +.+..+.+|+|+|..++|||||+..+++.
T Consensus 52 al~~iL~~~~~~~~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 52 ALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp HHHHHHCCTTTTTSBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHhccccCCCceEEEEEECCCCCcHHHHHHHHhhh
Confidence 44444432 23456889999999999999999999875
No 276
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.99 E-value=0.018 Score=46.67 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHH
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKL 193 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i 193 (206)
....|.|+|.+|+||||+++.+
T Consensus 32 ~~~killlG~~~SGKST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHH
Confidence 3558999999999999999985
No 277
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=94.99 E-value=0.0057 Score=55.37 Aligned_cols=21 Identities=29% Similarity=0.640 Sum_probs=19.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHH
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKL 193 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i 193 (206)
++ +++|+|.+|+|||||++.+
T Consensus 650 Ge--iv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 650 GT--FVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp SS--EEECCBCTTSSHHHHHTTT
T ss_pred CC--EEEEEcCCCCCHHHHHHHH
Confidence 55 9999999999999999985
No 278
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.87 E-value=0.037 Score=47.28 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...+|.+.|+.|+||||+++.+....
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999987654
No 279
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.86 E-value=0.019 Score=46.36 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=25.4
Q ss_pred HHHHHHH--hhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 160 IISEVWR--CIEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 160 ~~~~l~~--~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.++.+.. -+..+. ++.|.|.+|+|||||+..+...
T Consensus 50 ~LD~~Lg~GGl~~G~--ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGR--IVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTS--EEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCe--EEEEECCCCCCHHHHHHHHHHH
Confidence 4444432 233455 9999999999999999887654
No 280
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=94.83 E-value=0.03 Score=45.80 Aligned_cols=33 Identities=21% Similarity=0.180 Sum_probs=25.9
Q ss_pred HHHHhhhc---CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 163 EVWRCIED---HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 163 ~l~~~L~~---~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+++..+.. ++ .++|+|..|+|||||++.|.+..
T Consensus 164 raID~l~PigrGQ--R~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 164 RLIDLFAPIGKGQ--RGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHHHHSCCBTTC--EEEEEECTTCCHHHHHHHHHHHH
T ss_pred hhhhhcccccCCc--eEEEecCCCCChhHHHHHHHHHH
Confidence 34444443 66 99999999999999999888753
No 281
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=94.79 E-value=0.02 Score=49.30 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=24.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+....+|+|+|.+|+|||||++.+.+..
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3556789999999999999999998754
No 282
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.79 E-value=0.034 Score=47.82 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=24.6
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.+..+.... ++.|.|++|+||||++..+....
T Consensus 197 Av~~~~~~~--~~~I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 197 VLDQLAGHR--LVVLTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp HHHHHTTCS--EEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhCC--EEEEEcCCCCCHHHHHHHHHHHH
Confidence 344444454 89999999999999999887654
No 283
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=94.75 E-value=0.011 Score=47.11 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
-.|.|+|.+|+|||||+..+.+.
T Consensus 166 ~kI~ivG~~~vGKSsLl~~l~~~ 188 (329)
T 3o47_A 166 MRILMVGLDAAGKTTILYKLKLG 188 (329)
T ss_dssp EEEEEEESTTSSHHHHHHHTCSS
T ss_pred ceEEEECCCCccHHHHHHHHhCC
Confidence 37999999999999999987653
No 284
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.70 E-value=0.025 Score=47.02 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=27.8
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++++..-+..++ .+-|.|.+|+|||||+-.+....
T Consensus 186 ~LD~~lgGl~~G~--liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 186 ELDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp HHHHHHSSBCSSC--EEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCc--EEEEEeCCCCChHHHHHHHHHHH
Confidence 4555554555667 99999999999999998876654
No 285
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=94.68 E-value=0.041 Score=43.24 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...-.|.|+|..|+|||||+..+.+..
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~ 179 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNA 179 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCC
Confidence 344579999999999999998887653
No 286
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=94.58 E-value=0.019 Score=48.78 Aligned_cols=24 Identities=42% Similarity=0.488 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
-.|+++|.+|+|||||++.+.+..
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~ 65 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGET 65 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC--
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999987653
No 287
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=94.55 E-value=0.046 Score=44.26 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=30.6
Q ss_pred ccchHHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 154 TVGLDSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
-.|.+..++.|..... + ..|+++|..|+|||||.+.+.+..
T Consensus 144 g~gi~~L~~~l~~~~~-~--~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 144 GQGIAELADAIEYYRG-G--KDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp CTTHHHHHHHHHHHHT-T--SCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred CcCHHHHHhhhhhhcc-c--ceEEEecCCCCChhHHHHHHHhhh
Confidence 3466666666655442 3 379999999999999999998863
No 288
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.55 E-value=0.027 Score=45.84 Aligned_cols=24 Identities=21% Similarity=0.076 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
-+.|+|++|+|||||++.+.....
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999876553
No 289
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.48 E-value=0.05 Score=48.57 Aligned_cols=47 Identities=28% Similarity=0.394 Sum_probs=34.1
Q ss_pred CCccchHHHHHHHHHhhhc-------------CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 152 GKTVGLDSIISEVWRCIED-------------HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-------------~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..+.|.+..++.|...+.- ...+-|-++|++|+|||.||+.|.+...
T Consensus 477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 3466777777776665431 1234578999999999999999998753
No 290
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.47 E-value=0.024 Score=44.82 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
++-|.|++|+|||||+..+...
T Consensus 100 i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 9999999999999999988754
No 291
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.34 E-value=0.03 Score=42.08 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=19.9
Q ss_pred hcCCCeEEEEEcCCCCcHHHHHHHHH
Q 037945 169 EDHNEKVIGLYGMGGVGKTTLLKKLN 194 (206)
Q Consensus 169 ~~~~~~vI~IvG~~G~GKTTLa~~i~ 194 (206)
..+. ++-|.|.+|+|||||+..+.
T Consensus 28 ~~G~--l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 28 PEGT--TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTC--EEEEECCTTSSHHHHHHHHH
T ss_pred CCCe--EEEEEeCCCCCHHHHHHHHH
Confidence 3455 99999999999999997653
No 292
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=94.32 E-value=0.028 Score=47.01 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.|+|+|.+|+|||||++.+.+..
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998764
No 293
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=94.31 E-value=0.025 Score=48.33 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...|+|+|..|+|||||++.+.+..
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4599999999999999999998764
No 294
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=94.31 E-value=0.0029 Score=46.27 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=19.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~ 195 (206)
.-.|.|+|..|+|||||++.+.+
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~~ 55 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFAD 55 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSBC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999987764
No 295
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.24 E-value=0.029 Score=45.46 Aligned_cols=35 Identities=23% Similarity=0.258 Sum_probs=25.0
Q ss_pred HHHHHHH--hhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 160 IISEVWR--CIEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 160 ~~~~l~~--~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.++.+.. -+..+. ++-|.|++|+|||||+..+...
T Consensus 61 ~LD~~Lg~GGl~~G~--li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 61 SLDLALGVGGIPRGR--ITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp HHHHHTSSSSEETTS--EEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHhCCCCccCCc--EEEEEcCCCCChHHHHHHHHHH
Confidence 4444433 333455 8999999999999999877654
No 296
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=94.20 E-value=0.018 Score=46.26 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.+..|+|+|..|+|||||+..+.+..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 297
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=94.17 E-value=0.026 Score=45.86 Aligned_cols=25 Identities=28% Similarity=0.122 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...|.|-|+-|+||||+++.+....
T Consensus 49 ~~fIt~EG~dGsGKTT~~~~Lae~L 73 (376)
T 1of1_A 49 LLRVYIDGPHGMGKTTTTQLLVALG 73 (376)
T ss_dssp EEEEEECSSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4479999999999999999998764
No 298
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.00 E-value=0.041 Score=45.66 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=30.3
Q ss_pred CCccchHHHHHHHHHhhhc-----CCCeEEEEEcCCCCcHHHHHHHHHh
Q 037945 152 GKTVGLDSIISEVWRCIED-----HNEKVIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 152 ~~~~g~~~~~~~l~~~L~~-----~~~~vI~IvG~~G~GKTTLa~~i~~ 195 (206)
+.++.....+..+...+.+ ...++..|.|.+|+||||+++.+.+
T Consensus 135 t~l~~~~~~l~~l~~~~~~~~~~~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 135 SVVYSDMAKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp GSCCHHHHHHHHHHTTCBTTBCCCCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred chhhccHHHHHHHHHHHhhhccccccccEEEEEcCCCCCHHHHHHHHhc
Confidence 3455544445555555322 3567999999999999999988764
No 299
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=93.89 E-value=0.045 Score=44.31 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=21.1
Q ss_pred CCCeEEEEEc-CCCCcHHHHHHHHHhh
Q 037945 171 HNEKVIGLYG-MGGVGKTTLLKKLNNK 196 (206)
Q Consensus 171 ~~~~vI~IvG-~~G~GKTTLa~~i~~~ 196 (206)
+..++|+|+| -||+||||++-.+...
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~ 167 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIA 167 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHH
Confidence 3468999986 8999999999877544
No 300
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.77 E-value=0.076 Score=44.18 Aligned_cols=42 Identities=21% Similarity=0.382 Sum_probs=32.1
Q ss_pred cchHHHHHHHHHhhhc-------CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 155 VGLDSIISEVWRCIED-------HNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 155 ~g~~~~~~~l~~~L~~-------~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.|.++.++.+...+.. .....|+++|.+|+|||||+..+.+.
T Consensus 170 ~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~ 218 (456)
T 4dcu_A 170 LGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGE 218 (456)
T ss_dssp TTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred cchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCC
Confidence 4566677777666542 23568999999999999999998864
No 301
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.73 E-value=0.069 Score=44.65 Aligned_cols=26 Identities=46% Similarity=0.717 Sum_probs=23.0
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++ .++|+|..|+|||||++.+.+..
T Consensus 152 kGQ--r~~Ifgg~G~GKT~L~~~i~~~~ 177 (482)
T 2ck3_D 152 KGG--KIGLFGGAGVGKTVLIMELINNV 177 (482)
T ss_dssp TTC--EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCC--eeeeecCCCCChHHHHHHHHHhh
Confidence 367 99999999999999999987764
No 302
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=93.73 E-value=0.03 Score=50.70 Aligned_cols=17 Identities=29% Similarity=0.638 Sum_probs=15.9
Q ss_pred EEEEEcCCCCcHHHHHH
Q 037945 175 VIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~ 191 (206)
+++|+|++|+|||||+.
T Consensus 612 iv~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 612 FVCVTGVSGSGKSSLVM 628 (916)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEEccCCCChhhhHH
Confidence 89999999999999973
No 303
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=93.68 E-value=0.029 Score=45.05 Aligned_cols=23 Identities=39% Similarity=0.625 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
..|+|+|.+|+|||||++.+.+.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEE
T ss_pred CeeeeeCCCCCCHHHHHHHHHcC
Confidence 46899999999999999998764
No 304
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=93.59 E-value=0.077 Score=47.26 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=25.3
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.+.|...+..++ ++.|+|++|+||||++..+...
T Consensus 99 ~~~i~~~l~~~~--~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 99 RDEFLKLYQNNQ--IMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HHHHHHHHHHCS--EEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC--eEEEECCCCCCHHHHHHHHHHH
Confidence 344555566676 8999999999999977766443
No 305
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=93.57 E-value=0.036 Score=43.12 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=19.9
Q ss_pred CeEEEEEc---CCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYG---MGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG---~~G~GKTTLa~~i~~~~ 197 (206)
.++|+|++ -||+||||++-.+....
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~l 61 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLT 61 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHH
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHH
Confidence 34788886 89999999998876543
No 306
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.55 E-value=0.045 Score=43.51 Aligned_cols=21 Identities=14% Similarity=0.026 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~ 195 (206)
++-|.|++|+|||||+-.+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~ 50 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVS 50 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999776543
No 307
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=93.47 E-value=0.073 Score=46.81 Aligned_cols=25 Identities=24% Similarity=0.134 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...|+|+|..|+|||||++.+.+..
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~ 93 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGEN 93 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3479999999999999999998754
No 308
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=93.38 E-value=0.016 Score=49.16 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.+..|+|.+|+|||||+..|+--
T Consensus 61 g~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 61 GFCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp SEEEEEESHHHHHHHHTHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 38999999999999999998643
No 309
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=93.30 E-value=0.12 Score=40.58 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=22.6
Q ss_pred hcCCCeEEEEEcC-CCCcHHHHHHHHHhhh
Q 037945 169 EDHNEKVIGLYGM-GGVGKTTLLKKLNNKF 197 (206)
Q Consensus 169 ~~~~~~vI~IvG~-~G~GKTTLa~~i~~~~ 197 (206)
.+...++|.|.|. +|+||||++-.+....
T Consensus 100 ~~~~~kvI~vts~kgG~GKTtva~nLA~~l 129 (299)
T 3cio_A 100 METENNILMITGATPDSGKTFVSSTLAAVI 129 (299)
T ss_dssp SSCSCCEEEEEESSSSSCHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCChHHHHHHHHHHH
Confidence 3455679999986 7899999998776543
No 310
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=93.28 E-value=0.12 Score=39.93 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=22.0
Q ss_pred cCCCeEEEEEcC-CCCcHHHHHHHHHhhh
Q 037945 170 DHNEKVIGLYGM-GGVGKTTLLKKLNNKF 197 (206)
Q Consensus 170 ~~~~~vI~IvG~-~G~GKTTLa~~i~~~~ 197 (206)
+...++|.|.|. +|+||||++-.+....
T Consensus 79 ~~~~kvI~vts~kgG~GKTt~a~nLA~~l 107 (271)
T 3bfv_A 79 DSAVQSIVITSEAPGAGKSTIAANLAVAY 107 (271)
T ss_dssp TCCCCEEEEECSSTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence 355679999976 7899999998776543
No 311
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=93.22 E-value=0.057 Score=45.32 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
-.|.|+|.+|+|||||+..+.+..
T Consensus 323 ~ki~lvG~~nvGKSsLl~~l~~~~ 346 (497)
T 3lvq_E 323 MRILMLGLDAAGKTTILYKLKLGQ 346 (497)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eeEEEEcCCCCCHHHHHHHHhcCC
Confidence 478899999999999999987654
No 312
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=93.19 E-value=0.035 Score=46.60 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.|+|+|.+|+|||||++.+.+.
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999998765
No 313
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=93.16 E-value=0.069 Score=44.42 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=28.1
Q ss_pred HHHHHHHHHh--hhcCCCeEEEEEcCCCCcHHHHHHHHHh
Q 037945 158 DSIISEVWRC--IEDHNEKVIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 158 ~~~~~~l~~~--L~~~~~~vI~IvG~~G~GKTTLa~~i~~ 195 (206)
+..++.|... +.+..+.||+|+|+.++|||||+..+..
T Consensus 50 ~eAl~~iL~~~~i~~~~v~vvsv~G~~~~gks~l~N~ll~ 89 (457)
T 4ido_A 50 ETALNRILLSEAVRDKEVVAVSVAGAFRKGKSFLMDFMLR 89 (457)
T ss_dssp HHHHHHHHSSTTTTTSBEEEEEEEEBTTSSHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCceEEEEEECCCCCchhHHHHHHHH
Confidence 3445545433 3456788999999999999999997763
No 314
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.05 E-value=0.045 Score=46.10 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=26.2
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
++++..-+..+. ++.|.|.+|+|||||+..+....
T Consensus 232 LD~~lgGl~~G~--l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 232 INDKTLGARGGE--VIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp HHHHHCCCCTTC--EEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhHhhcccCCCe--EEEEeecCCCCchHHHHHHHHHH
Confidence 344443445566 89999999999999998876654
No 315
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=93.05 E-value=0.047 Score=44.39 Aligned_cols=26 Identities=38% Similarity=0.569 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+.-.|+|||.+.+|||||.+.+-+..
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~ 96 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTE 96 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999998753
No 316
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.89 E-value=0.063 Score=42.48 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~ 195 (206)
-+.|.|.+|+|||||+..+..
T Consensus 146 ~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 146 GVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHh
Confidence 689999999999999998875
No 317
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.88 E-value=0.11 Score=44.85 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
+.+.|.|++|+||||++..+...
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 38999999999999998876544
No 318
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=92.41 E-value=0.15 Score=43.64 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.0
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++ .++|.|..|+|||+|+..|.+..
T Consensus 231 rGq--r~~Ifgg~g~GKT~L~~~ia~~~ 256 (600)
T 3vr4_A 231 KGG--AAAVPGPFGAGKTVVQHQIAKWS 256 (600)
T ss_dssp TTC--EEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCC--EEeeecCCCccHHHHHHHHHhcc
Confidence 367 99999999999999999998753
No 319
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=92.39 E-value=0.086 Score=42.94 Aligned_cols=26 Identities=31% Similarity=0.234 Sum_probs=20.8
Q ss_pred CCCeEEEEE-cCCCCcHHHHHHHHHhh
Q 037945 171 HNEKVIGLY-GMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 171 ~~~~vI~Iv-G~~G~GKTTLa~~i~~~ 196 (206)
...++|+|+ |-||+||||++-.+...
T Consensus 106 ~~~~vIav~s~KGGvGKTT~a~nLA~~ 132 (398)
T 3ez2_A 106 SEAYVIFISNLKGGVSKTVSTVSLAHA 132 (398)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHH
Confidence 346789987 78899999998877654
No 320
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=92.34 E-value=0.19 Score=39.11 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=25.6
Q ss_pred HHHHHHhhhcCCCeEEEEEcC-CCCcHHHHHHHHHhhh
Q 037945 161 ISEVWRCIEDHNEKVIGLYGM-GGVGKTTLLKKLNNKF 197 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~-~G~GKTTLa~~i~~~~ 197 (206)
...|.....+...++|+|+|. +|+||||++-.+....
T Consensus 80 rt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~l 117 (286)
T 3la6_A 80 RTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVI 117 (286)
T ss_dssp HHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHH
T ss_pred HHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHH
Confidence 333433334456679999886 6899999998876544
No 321
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.14 E-value=0.18 Score=43.79 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=21.8
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHH-HHHHHh
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTL-LKKLNN 195 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTL-a~~i~~ 195 (206)
.+-+...|...+ +.-|+||+|+||||. +..|+.
T Consensus 195 ~~AV~~al~~~~--~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 195 KEAVLFALSQKE--LAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp HHHHHHHHHCSS--EEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC--ceEEECCCCCCHHHHHHHHHHH
Confidence 333444455555 778999999999964 444544
No 322
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=91.93 E-value=0.14 Score=43.54 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
++ .++|.|..|+|||+|+..|.+..
T Consensus 221 Gq--r~~Ifg~~g~GKT~l~~~ia~~~ 245 (578)
T 3gqb_A 221 GG--TAAIPGPFGSGKSVTQQSLAKWS 245 (578)
T ss_dssp TC--EEEECCCTTSCHHHHHHHHHHHS
T ss_pred CC--EEeeeCCCCccHHHHHHHHHhcc
Confidence 67 99999999999999999998753
No 323
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=91.87 E-value=0.22 Score=43.13 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
...|.|++|+||||++..+...
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 7889999999999987766543
No 324
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.85 E-value=0.091 Score=44.14 Aligned_cols=26 Identities=46% Similarity=0.718 Sum_probs=22.7
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++ .++|.|..|+|||+|++.+.+..
T Consensus 164 kGq--r~gIfgg~GvGKT~L~~~l~~~~ 189 (498)
T 1fx0_B 164 RGG--KIGLFGGAGVGKTVLIMELINNI 189 (498)
T ss_dssp TTC--CEEEEECSSSSHHHHHHHHHHHT
T ss_pred cCC--eEEeecCCCCCchHHHHHHHHHH
Confidence 366 89999999999999999887764
No 325
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=91.80 E-value=0.095 Score=43.75 Aligned_cols=27 Identities=4% Similarity=0.181 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
++ .++|.|..|+|||||+..|......
T Consensus 152 GQ--r~~Ifgg~G~GKt~Ll~~Ia~~~~~ 178 (469)
T 2c61_A 152 GQ--KLPIFSASGLPHNEIALQIARQASV 178 (469)
T ss_dssp TC--BCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CC--EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 66 8999999999999999999887543
No 326
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=91.79 E-value=0.092 Score=45.48 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
..-.|+|+|..|+|||||+..+.+.
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHh
Confidence 3558999999999999999988644
No 327
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=91.77 E-value=0.13 Score=44.39 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~ 195 (206)
....|+|+|..++|||||+..+..
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~ 199 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMF 199 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHH
T ss_pred CccEEEEEcCCCCCHHHHHHHHHH
Confidence 455799999999999999998754
No 328
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.70 E-value=0.12 Score=44.07 Aligned_cols=25 Identities=24% Similarity=0.291 Sum_probs=22.4
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.++ .++|.|..|+|||+|++.|.+.
T Consensus 226 kGq--r~~I~g~~g~GKT~L~~~ia~~ 250 (588)
T 3mfy_A 226 KGG--TAAIPGPAGSGKTVTQHQLAKW 250 (588)
T ss_dssp TTC--EEEECSCCSHHHHHHHHHHHHH
T ss_pred cCC--eEEeecCCCCCHHHHHHHHHhc
Confidence 367 9999999999999999998764
No 329
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=91.53 E-value=0.13 Score=39.29 Aligned_cols=26 Identities=35% Similarity=0.383 Sum_probs=19.3
Q ss_pred CCCeEEEEE-cCCCCcHHHHHHHHHhh
Q 037945 171 HNEKVIGLY-GMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 171 ~~~~vI~Iv-G~~G~GKTTLa~~i~~~ 196 (206)
...++|+|+ +-||+||||++-.+...
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~ 51 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATL 51 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHH
Confidence 345688885 56789999999877543
No 330
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=91.45 E-value=0.098 Score=43.87 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
...-.|+|+|..|+|||||+..+.+.
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHh
Confidence 44557899999999999999988655
No 331
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.26 E-value=0.12 Score=43.06 Aligned_cols=27 Identities=7% Similarity=0.165 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcC
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRD 199 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~~~ 199 (206)
++ .++|.|..|+|||||+..|.+....
T Consensus 151 GQ--r~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 151 GQ--KLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp TC--BCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CC--EEEEeCCCCcChHHHHHHHHHHHHh
Confidence 56 8999999999999999999887543
No 332
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=91.18 E-value=0.039 Score=46.41 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.|+|+|.+|+|||||++.+.+..
T Consensus 245 kV~ivG~pnvGKSSLln~L~~~~ 267 (482)
T 1xzp_A 245 RMVIVGKPNVGKSTLLNRLLNED 267 (482)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECcCCCcHHHHHHHHHCCC
Confidence 78999999999999999998874
No 333
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=91.15 E-value=0.1 Score=43.46 Aligned_cols=26 Identities=4% Similarity=0.198 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
++ .++|.|..|+|||||+..|.+...
T Consensus 147 GQ--r~~Ifgg~G~GKt~L~~~Ia~~~~ 172 (464)
T 3gqb_B 147 GQ--KLPIFSGSGLPANEIAAQIARQAT 172 (464)
T ss_dssp TC--BCCEEEETTSCHHHHHHHHHHHCB
T ss_pred CC--EEEEecCCCCCchHHHHHHHHHHH
Confidence 56 899999999999999999987754
No 334
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=91.08 E-value=0.34 Score=39.37 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=28.5
Q ss_pred ccchHHHHHHHHHhhh---cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 154 TVGLDSIISEVWRCIE---DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~---~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
++|......++...+. ..+.. |-|.|..|+|||++|+.|+...
T Consensus 139 ~ig~s~~m~~l~~~i~~~a~~~~~-vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 139 YVFESPKMKEILEKIKKISCAECP-VLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCSHHHHHHHHHHHHHTTCCSC-EEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhccHHhhHHHHHHHHhcCCCCC-eEEecCCCcCHHHHHHHHHHhc
Confidence 4444444444444333 34444 4899999999999999998764
No 335
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=90.93 E-value=0.079 Score=44.30 Aligned_cols=26 Identities=23% Similarity=0.157 Sum_probs=21.7
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHh
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~ 195 (206)
......|+|+|..++|||||+..+..
T Consensus 40 ~k~~~~i~iiG~vd~GKSTLi~~Ll~ 65 (467)
T 1r5b_A 40 GKEHVNIVFIGHVDAGKSTLGGNILF 65 (467)
T ss_dssp CCEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred CCCeeEEEEEECCCCCHHHHHHHHHH
Confidence 44556899999999999999988754
No 336
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=90.75 E-value=0.083 Score=43.13 Aligned_cols=26 Identities=31% Similarity=0.235 Sum_probs=13.2
Q ss_pred CCCeEEEEE-cCCCCcHHHHHHHHHhh
Q 037945 171 HNEKVIGLY-GMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 171 ~~~~vI~Iv-G~~G~GKTTLa~~i~~~ 196 (206)
+..++|+|+ |-||+||||++-.+...
T Consensus 109 ~~~~vIav~s~KGGvGKTT~a~nLA~~ 135 (403)
T 3ez9_A 109 KSPYVIFVVNLKGGVSKTVSTVTLAHA 135 (403)
T ss_dssp CSCEEEEECCC--------CHHHHHHH
T ss_pred CCceEEEEEcCCCCchHHHHHHHHHHH
Confidence 456789987 78999999988877654
No 337
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=90.62 E-value=0.14 Score=40.45 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~ 195 (206)
=+.|.|.+|+||||||-.+..
T Consensus 149 gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 149 GVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 588999999999999987654
No 338
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=90.44 E-value=0.32 Score=43.52 Aligned_cols=22 Identities=23% Similarity=0.218 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
+..|.|++|+||||++..+...
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 7889999999999987766544
No 339
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.17 E-value=0.26 Score=41.50 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=22.0
Q ss_pred cCCCeEEEEEcCCCCcHHHH-HHHHHhhhc
Q 037945 170 DHNEKVIGLYGMGGVGKTTL-LKKLNNKFR 198 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTL-a~~i~~~~~ 198 (206)
.++ .++|+|..|+|||+| +..|.+...
T Consensus 161 rGQ--R~~I~g~~g~GKT~Lal~~I~~q~~ 188 (510)
T 2ck3_A 161 RGQ--RELIIGDRQTGKTSIAIDTIINQKR 188 (510)
T ss_dssp TTC--BCEEEESTTSSHHHHHHHHHHHTHH
T ss_pred cCC--EEEEecCCCCCchHHHHHHHHHHHh
Confidence 366 899999999999999 567776543
No 340
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=90.06 E-value=0.19 Score=48.42 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=23.2
Q ss_pred hhcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 168 IEDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 168 L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+..+. +|-|.|++|+|||||+..+....
T Consensus 729 l~~G~--lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 729 LPMGR--IVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp EETTS--EEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCc--eEEEECCCCCCcHHHHHHHHHHH
Confidence 33455 99999999999999999987654
No 341
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=90.02 E-value=0.55 Score=36.89 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
+...+|.+=|+-|+||+|.++.|+....+.
T Consensus 84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldpr 113 (304)
T 3czq_A 84 GKRVMAVFEGRDAAGKGGAIHATTANMNPR 113 (304)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSCTT
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhccc
Confidence 445588999999999999999999988764
No 342
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=89.93 E-value=0.035 Score=45.89 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.....|+|+|..|+|||||++.+.+.
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~ 57 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQ 57 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC-
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcC
Confidence 34568999999999999999877654
No 343
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.83 E-value=0.23 Score=41.82 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=21.9
Q ss_pred cCCCeEEEEEcCCCCcHHHH-HHHHHhhh
Q 037945 170 DHNEKVIGLYGMGGVGKTTL-LKKLNNKF 197 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTL-a~~i~~~~ 197 (206)
.++ .++|+|..|+||||| +..|.+..
T Consensus 174 rGQ--R~~I~g~~g~GKT~Lal~~I~~~~ 200 (515)
T 2r9v_A 174 RGQ--RELIIGDRQTGKTAIAIDTIINQK 200 (515)
T ss_dssp TTC--BEEEEEETTSSHHHHHHHHHHTTT
T ss_pred cCC--EEEEEcCCCCCccHHHHHHHHHhh
Confidence 366 999999999999999 56787754
No 344
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.64 E-value=0.24 Score=41.66 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCcHHHH-HHHHHhhh
Q 037945 171 HNEKVIGLYGMGGVGKTTL-LKKLNNKF 197 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTL-a~~i~~~~ 197 (206)
++ .++|+|..|+|||+| +..|.+..
T Consensus 162 GQ--R~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 162 GQ--RELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp TC--BCEEEECSSSCHHHHHHHHHHGGG
T ss_pred CC--EEEEECCCCCCchHHHHHHHHHhh
Confidence 66 899999999999999 56887764
No 345
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=89.62 E-value=0.22 Score=47.97 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+++-|+|++|+|||+||+.+...-
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCChHHHHHHHHHHh
Confidence 368899999999999999987643
No 346
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=89.57 E-value=0.2 Score=42.34 Aligned_cols=21 Identities=14% Similarity=0.145 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~ 195 (206)
-+.|.|..|+||||+++.+..
T Consensus 169 HlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999998754
No 347
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.32 E-value=0.24 Score=40.69 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.=+.|+|+.|+|||++++.+...
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~ 76 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYT 76 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999998765543
No 348
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.27 E-value=0.24 Score=48.39 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.|-|+|++|+||||||..+....
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999998886653
No 349
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=89.22 E-value=0.44 Score=42.58 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=20.5
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHH
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLN 194 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~ 194 (206)
.+..+..+. ...|.|++|+||||++..+.
T Consensus 368 Av~~~l~~~--~~lI~GppGTGKT~~i~~~i 396 (802)
T 2xzl_A 368 AVSHVLQRP--LSLIQGPPGTGKTVTSATIV 396 (802)
T ss_dssp HHHHHTTCS--EEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhcCC--CEEEECCCCCCHHHHHHHHH
Confidence 333333444 78899999999998876554
No 350
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=88.99 E-value=0.26 Score=42.03 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLN 194 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~ 194 (206)
..+-|+|+|..+.|||||+-.+.
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL 52 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLL 52 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEEEeCCCCCHHHHHHHHH
Confidence 35689999999999999999874
No 351
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=88.94 E-value=0.63 Score=37.52 Aligned_cols=44 Identities=23% Similarity=0.268 Sum_probs=29.0
Q ss_pred ccchHHHHHHHHHhh---hcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 154 TVGLDSIISEVWRCI---EDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L---~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
++|......++...+ ...+. -+-|.|.+|+||+++|+.|+....
T Consensus 131 ~ig~s~~~~~~~~~~~~~a~~~~-~vli~GesGtGKe~lAr~ih~~s~ 177 (368)
T 3dzd_A 131 FVGEHPKILEIKRLIPKIAKSKA-PVLITGESGTGKEIVARLIHRYSG 177 (368)
T ss_dssp CCCCSHHHHHHHHHHHHHHTSCS-CEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ccccchHHHHHHhhhhhhhccch-hheEEeCCCchHHHHHHHHHHhcc
Confidence 556544444443333 33333 466999999999999999987653
No 352
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=88.35 E-value=0.39 Score=35.87 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHH-HHHHHHhhh
Q 037945 175 VIGLYGMGGVGKTT-LLKKLNNKF 197 (206)
Q Consensus 175 vI~IvG~~G~GKTT-La~~i~~~~ 197 (206)
+.-|.|+-|+|||| |.+.+++..
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~ 53 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGI 53 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 78889999999999 777776543
No 353
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=88.23 E-value=0.32 Score=39.11 Aligned_cols=21 Identities=38% Similarity=0.623 Sum_probs=18.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHH
Q 037945 173 EKVIGLYGMGGVGKTTLLKKL 193 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i 193 (206)
...+-+.|.|++||||++|.+
T Consensus 32 ~~klLlLG~geSGKST~~KQm 52 (353)
T 1cip_A 32 EVKLLLLGAGESGKSTIVKQM 52 (353)
T ss_dssp EEEEEEECSTTSSHHHHHHHH
T ss_pred cceEEEEcCCCCCchhHHHHH
Confidence 447889999999999998864
No 354
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=88.09 E-value=0.42 Score=40.24 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=21.1
Q ss_pred cCCCeEEEEEcCCCCcHHHHH-HHHHhh
Q 037945 170 DHNEKVIGLYGMGGVGKTTLL-KKLNNK 196 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa-~~i~~~ 196 (206)
.++ .++|.|..|+|||+|+ ..|.+.
T Consensus 161 rGQ--R~~Ifg~~g~GKT~l~l~~I~n~ 186 (513)
T 3oaa_A 161 RGQ--RELIIGDRQTGKTALAIDAIINQ 186 (513)
T ss_dssp TTC--BCEEEESSSSSHHHHHHHHHHTT
T ss_pred cCC--EEEeecCCCCCcchHHHHHHHhh
Confidence 366 8999999999999995 677764
No 355
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=87.50 E-value=0.63 Score=41.35 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
++..|+|+|..++|||||+..+.+..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~ 75 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRD 75 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 57799999999999999999998853
No 356
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.35 E-value=0.45 Score=46.63 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=28.3
Q ss_pred HHHHHHH--hhhcCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 160 IISEVWR--CIEDHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 160 ~~~~l~~--~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++++.. -+..++ ++-|.|.+|+|||||+..+.....
T Consensus 719 eLD~llggGGl~~G~--lilIaG~PG~GKTtLalqlA~~~a 757 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGR--IVEIYGPESSGKTTLTLQVIAAAQ 757 (2050)
T ss_dssp HHHHHHSSSSEETTS--EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCc--EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4555553 455566 999999999999999999887654
No 357
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=86.88 E-value=0.82 Score=39.17 Aligned_cols=35 Identities=34% Similarity=0.472 Sum_probs=23.0
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
+++...+......++-+.|.+|+||||++-.+...
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~ 350 (589)
T 1ihu_A 316 SALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVR 350 (589)
T ss_dssp HHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHH
Confidence 34444333333446667899999999998776544
No 358
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=86.63 E-value=0.36 Score=40.86 Aligned_cols=18 Identities=44% Similarity=0.743 Sum_probs=16.1
Q ss_pred eEEEEEcCCCCcHHHHHH
Q 037945 174 KVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~ 191 (206)
.++.+.|.+|+|||||..
T Consensus 242 ~~~lffGlSGtGKTTLs~ 259 (540)
T 2olr_A 242 DVAVFFGLSGTGKTTLST 259 (540)
T ss_dssp CEEEEECSTTSSHHHHHC
T ss_pred CEEEEEccCCCCHHHHhc
Confidence 488999999999999974
No 359
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=86.62 E-value=0.28 Score=41.50 Aligned_cols=19 Identities=42% Similarity=0.712 Sum_probs=16.4
Q ss_pred eEEEEEcCCCCcHHHHHHH
Q 037945 174 KVIGLYGMGGVGKTTLLKK 192 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~ 192 (206)
.++.+.|++|+|||||+..
T Consensus 226 ~~~~ffGlSGtGKTtLs~~ 244 (529)
T 1j3b_A 226 DVAVFFGLSGTGKTTLSTD 244 (529)
T ss_dssp CEEEEEECTTSCHHHHTCB
T ss_pred cEEEEEccccCChhhHhhc
Confidence 4888899999999999753
No 360
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=86.37 E-value=0.38 Score=40.74 Aligned_cols=18 Identities=39% Similarity=0.663 Sum_probs=16.2
Q ss_pred eEEEEEcCCCCcHHHHHH
Q 037945 174 KVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~ 191 (206)
.++.+.|.+|+|||||..
T Consensus 236 ~~~~ffGlSGtGKTTLs~ 253 (532)
T 1ytm_A 236 NTAIFFGLSGTGKTTLST 253 (532)
T ss_dssp SEEEEECCTTSSHHHHHC
T ss_pred eEEEEEecCCCCHHHHhh
Confidence 489999999999999984
No 361
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=86.33 E-value=0.29 Score=41.23 Aligned_cols=25 Identities=20% Similarity=0.141 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCcHHHH-HHHHHhhh
Q 037945 171 HNEKVIGLYGMGGVGKTTL-LKKLNNKF 197 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTL-a~~i~~~~ 197 (206)
++ .++|+|..|+|||+| +..|.+..
T Consensus 163 GQ--R~~Ifg~~g~GKT~Lal~~I~~~~ 188 (507)
T 1fx0_A 163 GQ--RELIIGDRQTGKTAVATDTILNQQ 188 (507)
T ss_dssp TC--BCBEEESSSSSHHHHHHHHHHTCC
T ss_pred CC--EEEEecCCCCCccHHHHHHHHHhh
Confidence 55 899999999999999 56887754
No 362
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=86.28 E-value=0.6 Score=47.10 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
-+-++|++|+|||+||+.+...
T Consensus 1269 ~vLL~GPpGtGKT~la~~~l~~ 1290 (2695)
T 4akg_A 1269 GIILCGPPGSGKTMIMNNALRN 1290 (2695)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHhc
Confidence 7889999999999999766554
No 363
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=86.19 E-value=0.4 Score=40.59 Aligned_cols=18 Identities=44% Similarity=0.737 Sum_probs=16.2
Q ss_pred eEEEEEcCCCCcHHHHHH
Q 037945 174 KVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~ 191 (206)
.++.+.|.+|+|||||..
T Consensus 214 ~~~~ffGlSGtGKTTLs~ 231 (524)
T 1ii2_A 214 DVTVFFGLSGTGKTTLSA 231 (524)
T ss_dssp CEEEEECCTTSSHHHHHC
T ss_pred CEEEEEccCCcchhhhhh
Confidence 489999999999999974
No 364
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=86.05 E-value=0.38 Score=43.23 Aligned_cols=20 Identities=25% Similarity=0.468 Sum_probs=17.5
Q ss_pred cCCCeEEEEEcCCCCcHHHHHH
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~ 191 (206)
.+. .+.|-|.+|+||||||-
T Consensus 35 ~~~--l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 35 RDA--LVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp SSS--EEEEESSTTSSHHHHHT
T ss_pred CCC--EEEEECCCCCCHHHHHH
Confidence 355 89999999999999995
No 365
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=85.65 E-value=1.1 Score=33.58 Aligned_cols=30 Identities=17% Similarity=-0.065 Sum_probs=21.6
Q ss_pred HHhhhcCCCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 165 WRCIEDHNEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 165 ~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
+..+.+++ .+-|+|+.|+|||.++..+...
T Consensus 102 i~~~~~~~--~~ll~~~tG~GKT~~a~~~~~~ 131 (237)
T 2fz4_A 102 LERWLVDK--RGCIVLPTGSGKTHVAMAAINE 131 (237)
T ss_dssp HHHHTTTS--EEEEEESSSTTHHHHHHHHHHH
T ss_pred HHHHHhCC--CEEEEeCCCCCHHHHHHHHHHH
Confidence 33344444 4788999999999999876654
No 366
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=85.27 E-value=0.53 Score=38.53 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=18.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHH
Q 037945 173 EKVIGLYGMGGVGKTTLLKKL 193 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i 193 (206)
...+-+.|.|.+||||++|.+
T Consensus 40 ~~klLLLG~geSGKSTi~KQm 60 (402)
T 1azs_C 40 THRLLLLGAGESGKSTIVKQM 60 (402)
T ss_dssp EEEEEEEESTTSSHHHHHHHH
T ss_pred cceEEEecCCCCchhhHHHHH
Confidence 457889999999999999864
No 367
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=84.65 E-value=0.62 Score=43.43 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
....|+|+|..++|||||+..+.+.
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~ 319 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTV 319 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhh
Confidence 3457999999999999999998764
No 368
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=83.78 E-value=0.49 Score=35.89 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=15.9
Q ss_pred EEcCCCCcHHHHHHHHHh
Q 037945 178 LYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 178 IvG~~G~GKTTLa~~i~~ 195 (206)
..|..|+|||||++.+.+
T Consensus 33 ~~~~~~vGKSsLi~~l~~ 50 (255)
T 3c5h_A 33 EKGQCGIGKSCLCNRFVR 50 (255)
T ss_dssp TTTTCCCSHHHHHHHHHC
T ss_pred ccCCCCcCHHHHHHHHHh
Confidence 368889999999999987
No 369
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=83.54 E-value=1.1 Score=45.23 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
+-|-+||++|+||||+.+.+..-
T Consensus 924 ~gvmlvGptgsGKTt~~~~La~a 946 (2695)
T 4akg_A 924 QALILVGKAGCGKTATWKTVIDA 946 (2695)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999988754
No 370
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=83.31 E-value=1.1 Score=33.26 Aligned_cols=23 Identities=17% Similarity=0.046 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
.+.-+.|+-|+||||.+-.+...
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r 51 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRR 51 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 48889999999999877665444
No 371
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=83.04 E-value=0.57 Score=42.60 Aligned_cols=18 Identities=39% Similarity=0.641 Sum_probs=16.3
Q ss_pred eEEEEEcCCCCcHHHHHH
Q 037945 174 KVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~ 191 (206)
+.+.|.|.+|+||||||=
T Consensus 45 ~lvv~tG~SGSGKSSLaf 62 (972)
T 2r6f_A 45 KLVVLTGLSGSGKSSLAF 62 (972)
T ss_dssp SEEEEEESTTSSHHHHHT
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 389999999999999984
No 372
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=82.92 E-value=0.58 Score=42.68 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=16.4
Q ss_pred eEEEEEcCCCCcHHHHHH
Q 037945 174 KVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~ 191 (206)
+.+.|.|.+|+|||+||=
T Consensus 47 ~lvv~tG~SGSGKSSLaf 64 (993)
T 2ygr_A 47 ALIVFTGLSGSGKSSLAF 64 (993)
T ss_dssp SEEEEEESTTSSHHHHHT
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 489999999999999984
No 373
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=82.61 E-value=0.78 Score=33.18 Aligned_cols=21 Identities=24% Similarity=0.153 Sum_probs=17.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~ 195 (206)
.+-|+++.|+|||..+-.+..
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~ 70 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAK 70 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHH
Confidence 577899999999998876543
No 374
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=82.21 E-value=0.68 Score=33.94 Aligned_cols=19 Identities=32% Similarity=0.298 Sum_probs=15.6
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q 037945 175 VIGLYGMGGVGKTTLLKKL 193 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i 193 (206)
.|-|++.+|.||||+|--+
T Consensus 30 ~i~v~tG~GkGKTTaA~Gl 48 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGT 48 (196)
T ss_dssp CEEEEESSSSCHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 6778888889999998654
No 375
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=80.73 E-value=1.2 Score=37.37 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=28.2
Q ss_pred ccchHHHHHHHHHhhhcCC-----CeEEEEEcCCCCcHHHHHHHH
Q 037945 154 TVGLDSIISEVWRCIEDHN-----EKVIGLYGMGGVGKTTLLKKL 193 (206)
Q Consensus 154 ~~g~~~~~~~l~~~L~~~~-----~~vI~IvG~~G~GKTTLa~~i 193 (206)
++|.+..+.-|.-.|..+. --=|-++|.+|+ ||+||+.+
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i 258 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHV 258 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHH
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHH
Confidence 7887776555555554441 013889999999 99999999
No 376
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=80.24 E-value=1.6 Score=31.29 Aligned_cols=24 Identities=17% Similarity=0.018 Sum_probs=17.2
Q ss_pred HhhhcCCCeEEEEEcCCCCcHHHHHH
Q 037945 166 RCIEDHNEKVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 166 ~~L~~~~~~vI~IvG~~G~GKTTLa~ 191 (206)
..+.++. -+-+.++.|+|||..+-
T Consensus 33 ~~~~~~~--~~li~~~TGsGKT~~~~ 56 (207)
T 2gxq_A 33 PLALEGK--DLIGQARTGTGKTLAFA 56 (207)
T ss_dssp HHHHTTC--CEEEECCTTSCHHHHHH
T ss_pred HHHcCCC--CEEEECCCCChHHHHHH
Confidence 3444444 58889999999998633
No 377
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=79.84 E-value=1.2 Score=38.21 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
=+.|.|..|+|||++++.+.-.
T Consensus 216 HlLIaG~TGSGKS~~L~tlI~s 237 (574)
T 2iut_A 216 HLLVAGTTGSGKSVGVNAMLLS 237 (574)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999976543
No 378
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=79.44 E-value=2.9 Score=35.22 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=29.6
Q ss_pred HHHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 161 ISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 161 ~~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
+.++-.++.. +...+|.+=|+-|+||+|.++.|+....+.
T Consensus 29 L~~lQ~~~~~~~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~pr 70 (500)
T 3czp_A 29 LLEAQFELKQQARFPVIILINGIEGAGKGETVKLLNEWMDPR 70 (500)
T ss_dssp HHHHHHHHHHHCCCCEEEEEEECTTSSHHHHHHHHHHHSCGG
T ss_pred HHHHHHHHHhcCCCCEEEEEeCcCCCCHHHHHHHHHHhcCcc
Confidence 3344444444 334578889999999999999999987664
No 379
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=78.63 E-value=11 Score=24.32 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=50.5
Q ss_pred hccccccc----hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 037945 23 HCGYVCGL----TDSLNSLREAGRDLVNITRDVEARVDLAVEQR-LRPTHEVNGWLESAKIMLREVDYILHRGD 91 (206)
Q Consensus 23 ~~~~~~~~----~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~-~~~~~~~~~wl~~l~~~~~~~ed~ld~~~ 91 (206)
+--|+.++ -.++++|+.++......|.....++.+|+..- ..+|+.-+.-+.+-+.++.-.++-|.++.
T Consensus 22 ~~~~~~~~~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLK 95 (107)
T 2k48_A 22 ENLYFQGIDPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELK 95 (107)
T ss_dssp CCCCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455554 57899999999999999998888888888753 34456666777777777777777776653
No 380
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=76.64 E-value=11 Score=23.47 Aligned_cols=62 Identities=18% Similarity=0.155 Sum_probs=45.9
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhhhH
Q 037945 30 LTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVDYILHRGDE 92 (206)
Q Consensus 30 ~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~wl~~l~~~~~~~ed~ld~~~~ 92 (206)
.++++..|...+..|...+..++..+.+..-.. .+...+.....++..+..+.+...+++..
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~-~d~~~~~~l~~~l~~~e~eLe~~~erWee 81 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFS-QPHEQTQKVLADMAAAEQELEQAFERWEY 81 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGG-SCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888887776543222 23467888888888888888888877754
No 381
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=75.39 E-value=2.7 Score=30.98 Aligned_cols=24 Identities=17% Similarity=-0.039 Sum_probs=17.1
Q ss_pred HHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 165 WRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 165 ~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
+..+..+. -+-+.++.|+|||+.+
T Consensus 56 i~~~~~~~--~~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 56 IGLALQGK--DVLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHTTC--CEEEECCTTSCHHHHH
T ss_pred HHHHhCCC--CEEEEeCCCCcHHHHH
Confidence 33444444 5778999999999853
No 382
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=75.26 E-value=3.3 Score=31.93 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=19.6
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHHHHHH
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKL 193 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i 193 (206)
.+..+.++. .+.++++.|+|||..+-..
T Consensus 24 ~i~~i~~~~--~~lv~~~TGsGKT~~~~~~ 51 (337)
T 2z0m_A 24 TIPLMLQGK--NVVVRAKTGSGKTAAYAIP 51 (337)
T ss_dssp HHHHHHTTC--CEEEECCTTSSHHHHHHHH
T ss_pred HHHHHhcCC--CEEEEcCCCCcHHHHHHHH
Confidence 334444554 6889999999999865543
No 383
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=75.04 E-value=2.6 Score=32.73 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
.-+|.+-|+.|+||.+.++.|.....+.
T Consensus 75 ~vlIvfEG~DaAGKgg~Ik~l~~~ldPR 102 (289)
T 3rhf_A 75 RLLLILQAMDTAGKGGIVSHVVGAMDPQ 102 (289)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHSCGG
T ss_pred cEEEEEECCCCCChHHHHHHHHHhcCcC
Confidence 4577889999999999999999987664
No 384
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=74.33 E-value=3 Score=30.36 Aligned_cols=21 Identities=24% Similarity=0.161 Sum_probs=15.9
Q ss_pred hhhcCCCeEEEEEcCCCCcHHHH
Q 037945 167 CIEDHNEKVIGLYGMGGVGKTTL 189 (206)
Q Consensus 167 ~L~~~~~~vI~IvG~~G~GKTTL 189 (206)
.+.++. -+-++++.|+|||..
T Consensus 47 ~~~~~~--~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 47 PIIEGH--DVLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHTTC--CEEEECCTTSSHHHH
T ss_pred HHhcCC--CEEEECCCCCcHHHH
Confidence 344443 588999999999976
No 385
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=73.83 E-value=3.5 Score=34.70 Aligned_cols=29 Identities=14% Similarity=0.260 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhcCC
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKFRDT 200 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~~~ 200 (206)
...+|.+-|+-|+||+|.++.|+....+.
T Consensus 299 ~~vlIvfEG~DaAGKg~~Ik~l~~~ldpr 327 (500)
T 3czp_A 299 HSLVAVFEGNDAAGKGGAIRRVTDALDPR 327 (500)
T ss_dssp CEEEEEEEESTTSCHHHHHHHHHTTSCGG
T ss_pred CCEEEEEeccCCCCHHHHHHHHHHhcCcc
Confidence 34577889999999999999999887664
No 386
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=73.03 E-value=3.2 Score=36.27 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=18.7
Q ss_pred hhcCCCeEEEEEcCCCCcHHHHHHH
Q 037945 168 IEDHNEKVIGLYGMGGVGKTTLLKK 192 (206)
Q Consensus 168 L~~~~~~vI~IvG~~G~GKTTLa~~ 192 (206)
+.+++ .+-|+|+.|+|||+.+..
T Consensus 43 ~~~~~--~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 43 LLEGN--RLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp TTTTC--CEEEECCTTSCHHHHHHH
T ss_pred hcCCC--cEEEEcCCCCcHHHHHHH
Confidence 44555 789999999999999854
No 387
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=73.01 E-value=17 Score=23.74 Aligned_cols=59 Identities=10% Similarity=-0.028 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 037945 33 SLNSLREAGRDLVNITRDVEARVDLAVEQR-LRPTHEVNGWLESAKIMLREVDYILHRGD 91 (206)
Q Consensus 33 ~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~-~~~~~~~~~wl~~l~~~~~~~ed~ld~~~ 91 (206)
+++.|+.++......|......+.+|+..- ..+++.-+.-+..-+.++.-.++-|+++.
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevNK~tl~~R~~~Vs~lq~KiaeLK 82 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELNKRTLTDREGVAVSIQAKIDELK 82 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888888887777777653 33456666666776777776776666653
No 388
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=72.69 E-value=2.8 Score=30.05 Aligned_cols=25 Identities=16% Similarity=-0.015 Sum_probs=17.3
Q ss_pred HHhhhcCCCeEEEEEcCCCCcHHHHHH
Q 037945 165 WRCIEDHNEKVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 165 ~~~L~~~~~~vI~IvG~~G~GKTTLa~ 191 (206)
+..+.++. -+-++++.|+|||..+-
T Consensus 34 i~~~~~~~--~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 34 IPIALSGR--DILARAKNGTGKSGAYL 58 (206)
T ss_dssp HHHHHTTC--CEEEECCSSSTTHHHHH
T ss_pred HHHHccCC--CEEEECCCCCchHHHHH
Confidence 33444443 57899999999996443
No 389
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=70.65 E-value=4.5 Score=35.52 Aligned_cols=29 Identities=24% Similarity=0.383 Sum_probs=23.9
Q ss_pred hcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 169 EDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 169 ~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++.-..|-|.|-.|+|||.-++.|....
T Consensus 90 ~~~~nQsIiisGESGAGKTe~tK~i~~yl 118 (697)
T 1lkx_A 90 QSQENQCVIISGESGAGKTEASKKIMQFL 118 (697)
T ss_dssp HHCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCcEEEecCCCCCCchhhHHHHHHHH
Confidence 34555699999999999999999987654
No 390
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=70.15 E-value=4.9 Score=29.33 Aligned_cols=23 Identities=22% Similarity=0.070 Sum_probs=16.3
Q ss_pred hhhcCCCeEEEEEcCCCCcHHHHHH
Q 037945 167 CIEDHNEKVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 167 ~L~~~~~~vI~IvG~~G~GKTTLa~ 191 (206)
.+.++. -+-+.++.|+|||..+.
T Consensus 53 ~~~~~~--~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 53 IILQGI--DLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp HHHTTC--CEEEECCTTSCHHHHHH
T ss_pred HHhCCC--CEEEECCCCChHHHHHH
Confidence 334443 56889999999997543
No 391
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=69.84 E-value=5.8 Score=28.70 Aligned_cols=18 Identities=22% Similarity=0.246 Sum_probs=14.7
Q ss_pred EEEEEcCCCCcHHHHHHH
Q 037945 175 VIGLYGMGGVGKTTLLKK 192 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~ 192 (206)
-+.+.++.|+|||..+-.
T Consensus 53 ~~li~~~TGsGKT~~~~~ 70 (220)
T 1t6n_A 53 DVLCQAKSGMGKTAVFVL 70 (220)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred CEEEECCCCCchhhhhhH
Confidence 478899999999986554
No 392
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=69.57 E-value=4.4 Score=30.33 Aligned_cols=24 Identities=21% Similarity=-0.008 Sum_probs=17.1
Q ss_pred HHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 165 WRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 165 ~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
+..+.++. -+-+.++.|+|||..+
T Consensus 74 i~~i~~~~--~~lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 74 IPLALQGR--DIIGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHTTC--CEEEECCTTSCHHHHH
T ss_pred HHHHhCCC--CEEEEcCCCCCchhHh
Confidence 33444444 5788999999999854
No 393
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=69.37 E-value=2.8 Score=43.12 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.+-+-+||++|+||||..+.+..-.
T Consensus 906 RhGvmlVGp~gsGKTt~~~~L~~al 930 (3245)
T 3vkg_A 906 NHGVMMVGPSGGGKTTSWEVYLEAI 930 (3245)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eeeEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999988876543
No 394
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=69.34 E-value=5.5 Score=31.40 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=19.3
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHHHH
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~ 191 (206)
.+..+..+.-+.+-|+++.|+|||..+-
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~~~ 62 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAAFS 62 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHHHH
Confidence 3344444433478899999999998654
No 395
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=69.33 E-value=20 Score=24.86 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 037945 67 HEVNGWLESAKIMLREVD 84 (206)
Q Consensus 67 ~~~~~wl~~l~~~~~~~e 84 (206)
..+..|+.+...-+..++
T Consensus 128 ~LV~RWM~rk~qEAe~MN 145 (152)
T 3a7p_A 128 QLVARWLKKTEKETEAMN 145 (152)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455566655555444433
No 396
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=69.27 E-value=3.2 Score=42.75 Aligned_cols=22 Identities=32% Similarity=0.280 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHhh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNK 196 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~ 196 (206)
-|-++|+.|+|||++++.....
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~ 1327 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRA 1327 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGG
T ss_pred cEEEECCCCCCHHHHHHHHHHh
Confidence 5789999999999888766543
No 397
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=68.94 E-value=2.3 Score=37.17 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=18.3
Q ss_pred hhcCCCeEEEEEcCCCCcHHHHHHH
Q 037945 168 IEDHNEKVIGLYGMGGVGKTTLLKK 192 (206)
Q Consensus 168 L~~~~~~vI~IvG~~G~GKTTLa~~ 192 (206)
+.+++ .+-|+|+.|+|||+.+..
T Consensus 37 i~~~~--~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 37 VFSGK--NLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp HTTCS--CEEEECSSHHHHHHHHHH
T ss_pred HhCCC--cEEEEcCCccHHHHHHHH
Confidence 44455 788999999999998853
No 398
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=68.69 E-value=5.2 Score=35.54 Aligned_cols=29 Identities=28% Similarity=0.404 Sum_probs=23.7
Q ss_pred hcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 169 EDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 169 ~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++.-..|-|.|-.|+|||.-++.|....
T Consensus 168 ~~~~nQsIiisGESGAGKTe~tK~i~~yl 196 (770)
T 1w9i_A 168 DDRQNQSLLITGESGAGKTENTKKVIQYL 196 (770)
T ss_dssp HHCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhcCCcEEEEecCCCCcchHHHHHHHHHH
Confidence 34555699999999999999999887653
No 399
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=68.66 E-value=2.9 Score=36.63 Aligned_cols=18 Identities=33% Similarity=0.169 Sum_probs=15.5
Q ss_pred eEEEEEcCCCCcHHHHHH
Q 037945 174 KVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~ 191 (206)
+.+-++|+.|+|||+.+-
T Consensus 156 k~vlv~apTGSGKT~~al 173 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTYHAI 173 (677)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 489999999999999544
No 400
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=68.35 E-value=6.1 Score=30.77 Aligned_cols=18 Identities=28% Similarity=0.172 Sum_probs=15.2
Q ss_pred EEEEEcCCCCcHHHHHHH
Q 037945 175 VIGLYGMGGVGKTTLLKK 192 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~ 192 (206)
.+-+.++.|+|||+.+-.
T Consensus 46 ~~l~~~~TGsGKT~~~~~ 63 (367)
T 1hv8_A 46 NIVAQARTGSGKTASFAI 63 (367)
T ss_dssp EEEEECCSSSSHHHHHHH
T ss_pred CEEEECCCCChHHHHHHH
Confidence 677899999999987654
No 401
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=67.78 E-value=5.5 Score=35.47 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=23.5
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
++.-..|-|.|-.|+|||.-+|.|....
T Consensus 168 ~~~nQsIiiSGESGAGKTe~tK~im~yl 195 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNTKRVIQYF 195 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHHHHHHHhh
Confidence 4555699999999999999999987654
No 402
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=67.06 E-value=5.2 Score=24.28 Aligned_cols=46 Identities=13% Similarity=0.020 Sum_probs=22.4
Q ss_pred HhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHH
Q 037945 32 DSLNSLREAGRDLVN-------ITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVD 84 (206)
Q Consensus 32 ~~~~~l~~~l~~l~~-------~l~~~~~~~~~ae~~~~~~~~~~~~wl~~l~~~~~~~e 84 (206)
.+.....+.++.++. .|++++..+..++ ......+.++.++.|..+
T Consensus 16 ~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~~e-------~e~~~l~~~I~~ILYat~ 68 (75)
T 3mtu_A 16 LDKENALDRAEQAEADKDFYFGKLRNIELICQENE-------GENDPVLQRIVDILYATD 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTG-------GGTCHHHHHHHHHHHCBT
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHhccC
Confidence 333444444444444 5566555544321 122346666666666544
No 403
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=66.97 E-value=5.8 Score=35.34 Aligned_cols=28 Identities=25% Similarity=0.147 Sum_probs=23.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
++.-..|-|.|-.|+|||.-++.|....
T Consensus 137 ~~~nQsIiiSGESGAGKTe~tK~i~~yl 164 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENTKFVLRYL 164 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehHHHHHHHH
Confidence 4455699999999999999999887654
No 404
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=66.74 E-value=5.8 Score=36.59 Aligned_cols=28 Identities=25% Similarity=0.147 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
++.-..|-|.|..|+|||.-++.|....
T Consensus 141 ~~~nQsIiiSGESGAGKTestK~im~yL 168 (1052)
T 4anj_A 141 LKLSQSIIVSGESGAGKTENTKFVLRYL 168 (1052)
T ss_dssp HTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hCCCceEEEecCCCCCHHHHHHHHHHHH
Confidence 4455699999999999999999987654
No 405
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=66.67 E-value=6 Score=35.33 Aligned_cols=28 Identities=32% Similarity=0.356 Sum_probs=23.6
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
++.-..|-|.|-.|+|||.-++.|....
T Consensus 153 ~~~nQsIiisGESGAGKTe~tK~i~~yl 180 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSAKYAMRYF 180 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHHHHHHHHH
Confidence 4555699999999999999999987654
No 406
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=66.12 E-value=3.7 Score=35.94 Aligned_cols=22 Identities=18% Similarity=0.034 Sum_probs=18.1
Q ss_pred hhcCCCeEEEEEcCCCCcHHHHHH
Q 037945 168 IEDHNEKVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 168 L~~~~~~vI~IvG~~G~GKTTLa~ 191 (206)
+.+++ .+-|+|+.|+|||+.+.
T Consensus 36 ~~~~~--~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 36 ILEGK--NALISIPTASGKTLIAE 57 (720)
T ss_dssp GGGTC--EEEEECCGGGCHHHHHH
T ss_pred hcCCC--cEEEEcCCccHHHHHHH
Confidence 45555 79999999999999874
No 407
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=65.82 E-value=6.3 Score=31.30 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=17.4
Q ss_pred HhhhcCCCeEEEEEcCCCCcHHHHHHH
Q 037945 166 RCIEDHNEKVIGLYGMGGVGKTTLLKK 192 (206)
Q Consensus 166 ~~L~~~~~~vI~IvG~~G~GKTTLa~~ 192 (206)
..+..+. -+-+.++.|+|||+.+-.
T Consensus 53 ~~i~~~~--~~li~a~TGsGKT~~~~~ 77 (400)
T 1s2m_A 53 PVAITGR--DILARAKNGTGKTAAFVI 77 (400)
T ss_dssp HHHHHTC--CEEEECCTTSCHHHHHHH
T ss_pred HHHhcCC--CEEEECCCCcHHHHHHHH
Confidence 3334443 477899999999986543
No 408
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=65.55 E-value=5.6 Score=31.66 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=18.6
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
.+..+..+.-+.+-++++.|+|||..+
T Consensus 55 ~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 55 ALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 334444442347889999999999865
No 409
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=64.99 E-value=5 Score=29.12 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=13.8
Q ss_pred EEEEEcCCCCcHHHHHH
Q 037945 175 VIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~ 191 (206)
-+.+.++.|+|||..+-
T Consensus 43 ~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 43 SMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CEEEECCSSHHHHHHHH
T ss_pred CEEEECCCCChHHHHHH
Confidence 56789999999998533
No 410
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=64.34 E-value=6.4 Score=29.03 Aligned_cols=22 Identities=18% Similarity=0.061 Sum_probs=16.0
Q ss_pred HhhhcCCCeEEEEEcCCCCcHHHH
Q 037945 166 RCIEDHNEKVIGLYGMGGVGKTTL 189 (206)
Q Consensus 166 ~~L~~~~~~vI~IvG~~G~GKTTL 189 (206)
..+.++. -+-+.++.|+|||..
T Consensus 61 ~~~~~~~--~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 61 PVMLHGR--ELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHTTC--CEEEECCTTSCHHHH
T ss_pred HHHhCCC--CEEEECCCCCcHHHH
Confidence 3344444 478899999999975
No 411
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=64.22 E-value=6.2 Score=35.43 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=23.8
Q ss_pred hcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 169 EDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 169 ~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++.-..|-|.|-.|+|||.-++.|....
T Consensus 165 ~~~~nQsIiiSGESGAGKTe~tK~i~~yl 193 (837)
T 1kk8_A 165 TDRENQSCLITGESGAGKTENTKKVIMYL 193 (837)
T ss_dssp HHTSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hcCCCcEEEEeCCCCCCchhhHHHHHHHH
Confidence 34555689999999999999999987654
No 412
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=63.95 E-value=6.5 Score=36.10 Aligned_cols=29 Identities=28% Similarity=0.404 Sum_probs=23.7
Q ss_pred hcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 169 EDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 169 ~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++.-..|-|.|-+|+|||.-++.|....
T Consensus 168 ~~~~~QsIiisGESGAGKTe~~K~i~~yl 196 (1010)
T 1g8x_A 168 DDRQNQSLLITGESGAGKTENTKKVIQYL 196 (1010)
T ss_dssp HHTCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCCeEEEEeCCCCCCcchHHHHHHHHH
Confidence 34555699999999999999999987654
No 413
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=63.89 E-value=3.7 Score=30.36 Aligned_cols=16 Identities=25% Similarity=0.270 Sum_probs=13.5
Q ss_pred EEEEEcCCCCcHHHHH
Q 037945 175 VIGLYGMGGVGKTTLL 190 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa 190 (206)
-+-++++.|+|||..+
T Consensus 69 ~~li~apTGsGKT~~~ 84 (237)
T 3bor_A 69 DVIAQAQSGTGKTATF 84 (237)
T ss_dssp CEEECCCSSHHHHHHH
T ss_pred CEEEECCCCCcHHHHH
Confidence 4778999999999764
No 414
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=63.86 E-value=23 Score=23.89 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=36.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCCc--hhHHHHHHHHHHHHHHHHHHH
Q 037945 31 TDSLNSLREAGRDLVNITRDVEARVDLAVEQR----LRPT--HEVNGWLESAKIMLREVDYIL 87 (206)
Q Consensus 31 ~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~----~~~~--~~~~~wl~~l~~~~~~~ed~l 87 (206)
..--+.|+..++.+...|.|++..+..++... .... ..-+.|+..++....++++-+
T Consensus 66 ~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 66 DWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455678888888888888888887766432 1110 223467777777776666543
No 415
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=63.70 E-value=11 Score=18.11 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037945 36 SLREAGRDLVNITRDVEARVDL 57 (206)
Q Consensus 36 ~l~~~l~~l~~~l~~~~~~~~~ 57 (206)
.|+++++.|++....++.+++.
T Consensus 3 rlee~~r~l~~ivq~lq~r~dr 24 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDR 24 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666676666666555543
No 416
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=63.60 E-value=6.7 Score=35.98 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=23.9
Q ss_pred hcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 169 EDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 169 ~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++.-..|-|.|-+|+|||.-++.|....
T Consensus 142 ~~~~~QsIiisGESGAGKTe~~K~i~~yl 170 (995)
T 2ycu_A 142 QDREDQSILCTGESGAGKTENTKKVIQYL 170 (995)
T ss_dssp HHCCCEEEEEECBTTSSHHHHHHHHHHHH
T ss_pred hcCCCcEEEecCCCCCCchhhHHHHHHHH
Confidence 34555689999999999999999987654
No 417
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=63.44 E-value=6.8 Score=29.10 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=17.9
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
+.+..+.++. -+.+.++.|+|||..+
T Consensus 52 ~~i~~i~~~~--~~l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 52 NAIPAILEHR--DIMACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHHTTC--CEEEECCTTSSHHHHH
T ss_pred HHHHHHhCCC--CEEEECCCCChHHHHH
Confidence 3444455554 5778899999999743
No 418
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=63.12 E-value=28 Score=22.97 Aligned_cols=54 Identities=4% Similarity=-0.053 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhhhH
Q 037945 37 LREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVDYILHRGDE 92 (206)
Q Consensus 37 l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~wl~~l~~~~~~~ed~ld~~~~ 92 (206)
++.++..|...|+..+...+.|..++. .+.+.....++..+..+++.+=..-.+
T Consensus 8 ~K~Eiq~L~drLD~~~rKlaaa~~rgd--~~~i~qf~~E~~~l~k~I~~lk~~q~~ 61 (123)
T 2lf0_A 8 EKNEIKRLSDRLDAIRHQQADLSLVEA--ADKYAELEKEKATLEAEIARLREVHSQ 61 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCTTTC--TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666555655543 478888888888888888877544333
No 419
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=63.01 E-value=23 Score=21.56 Aligned_cols=60 Identities=12% Similarity=0.059 Sum_probs=43.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 037945 32 DSLNSLREAGRDLVNITRDVEARVDLAVEQR-LRPTHEVNGWLESAKIMLREVDYILHRGD 91 (206)
Q Consensus 32 ~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~-~~~~~~~~~wl~~l~~~~~~~ed~ld~~~ 91 (206)
.+++.|+.++......|......+.+|+..- ..+|+.-+.-+..-+.++.-.++-|.++.
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNK~~~~~R~~~V~~lq~Ki~elk 65 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGELK 65 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888888888888777653 34456666677777777777777666653
No 420
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=62.02 E-value=7.9 Score=35.86 Aligned_cols=29 Identities=31% Similarity=0.337 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 170 DHNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 170 ~~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
++.-..|-|.|-+|+|||.-++.|....-
T Consensus 153 ~~~~QsIiisGESGAGKTe~~K~i~~yla 181 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVSAKYAMRYFA 181 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEcCCCCCCccchHHHHHHHHH
Confidence 45556999999999999999999877653
No 421
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=61.71 E-value=7.5 Score=28.70 Aligned_cols=23 Identities=17% Similarity=-0.083 Sum_probs=16.4
Q ss_pred hhhcCCCeEEEEEcCCCCcHHHHHH
Q 037945 167 CIEDHNEKVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 167 ~L~~~~~~vI~IvG~~G~GKTTLa~ 191 (206)
.+.++. -+-+.++.|+|||..+-
T Consensus 62 ~~~~g~--~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 62 VALSGL--DMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp HHHHTC--CEEEEECTTSCHHHHHH
T ss_pred HHhCCC--CEEEECCCcCHHHHHHH
Confidence 334444 57788999999997643
No 422
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=61.55 E-value=5.4 Score=30.09 Aligned_cols=17 Identities=24% Similarity=0.108 Sum_probs=14.0
Q ss_pred EEEEEcCCCCcHHHHHH
Q 037945 175 VIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~ 191 (206)
-+-++++.|+|||..+.
T Consensus 93 ~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 93 DLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCEECCCTTSCHHHHHH
T ss_pred cEEEEccCCCCchHHHH
Confidence 47889999999998544
No 423
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=61.35 E-value=8 Score=28.30 Aligned_cols=23 Identities=17% Similarity=0.047 Sum_probs=16.3
Q ss_pred HhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 166 RCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 166 ~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
..+.++. -+-+.++.|+|||..+
T Consensus 56 ~~~~~~~--~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 56 PLGRCGL--DLIVQAKSGTGKTCVF 78 (230)
T ss_dssp HHHHTTC--CEEEECCTTSSHHHHH
T ss_pred HHHhCCC--CEEEECCCCCcHHHHH
Confidence 3344443 5778999999999753
No 424
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=60.23 E-value=9.1 Score=33.10 Aligned_cols=30 Identities=17% Similarity=-0.011 Sum_probs=21.1
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHH
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLN 194 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~ 194 (206)
+++.++..+. -+-|+++.|+|||+.+....
T Consensus 20 ~~i~~~l~g~--~~iv~~~TGsGKTl~~~~~i 49 (696)
T 2ykg_A 20 ELALPAMKGK--NTIICAPTGCGKTFVSLLIC 49 (696)
T ss_dssp HHHHHHHTTC--CEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHcCC--CEEEEcCCCchHHHHHHHHH
Confidence 3445555554 56799999999999776543
No 425
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=59.98 E-value=11 Score=30.76 Aligned_cols=30 Identities=17% Similarity=-0.077 Sum_probs=21.2
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHHHHHHHh
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~~ 195 (206)
.+..+..++ .+-|+++.|+|||..+-.+..
T Consensus 101 ai~~i~~~~--~~ll~~~TGsGKT~~~l~~i~ 130 (472)
T 2fwr_A 101 ALERWLVDK--RGCIVLPTGSGKTHVAMAAIN 130 (472)
T ss_dssp HHHHHTTTT--EEEEECCTTSCHHHHHHHHHH
T ss_pred HHHHHHhcC--CEEEEeCCCCCHHHHHHHHHH
Confidence 344444444 588899999999998766544
No 426
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=59.63 E-value=7.6 Score=29.48 Aligned_cols=20 Identities=15% Similarity=0.011 Sum_probs=15.5
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 037945 176 IGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 176 I~IvG~~G~GKTTLa~~i~~ 195 (206)
.-+.++.|+|||..+-.+..
T Consensus 131 ~ll~~~tGsGKT~~~~~~~~ 150 (282)
T 1rif_A 131 RILNLPTSAGRSLIQALLAR 150 (282)
T ss_dssp EEECCCTTSCHHHHHHHHHH
T ss_pred eEEEcCCCCCcHHHHHHHHH
Confidence 45699999999998865543
No 427
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=58.72 E-value=5.5 Score=31.75 Aligned_cols=25 Identities=16% Similarity=-0.007 Sum_probs=17.5
Q ss_pred HHhhhcCCCeEEEEEcCCCCcHHHHHH
Q 037945 165 WRCIEDHNEKVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 165 ~~~L~~~~~~vI~IvG~~G~GKTTLa~ 191 (206)
+..+..+. -+-+.++.|+|||+.+-
T Consensus 71 i~~~~~~~--~~lv~a~TGsGKT~~~~ 95 (414)
T 3eiq_A 71 ILPCIKGY--DVIAQAQSGTGKTATFA 95 (414)
T ss_dssp HHHHHTTC--CEEECCCSCSSSHHHHH
T ss_pred hHHHhCCC--CEEEECCCCCcccHHHH
Confidence 33444444 47889999999998643
No 428
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=58.11 E-value=11 Score=29.63 Aligned_cols=25 Identities=16% Similarity=-0.009 Sum_probs=17.6
Q ss_pred HHhhhcCCCeEEEEEcCCCCcHHHHHH
Q 037945 165 WRCIEDHNEKVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 165 ~~~L~~~~~~vI~IvG~~G~GKTTLa~ 191 (206)
+..+..+. -+-+.++.|+|||..+-
T Consensus 39 i~~~~~~~--~~lv~a~TGsGKT~~~~ 63 (391)
T 1xti_A 39 IPQAILGM--DVLCQAKSGMGKTAVFV 63 (391)
T ss_dssp HHHHTTTC--CEEEECSSCSSHHHHHH
T ss_pred HHHHhcCC--cEEEECCCCCcHHHHHH
Confidence 33444443 57889999999998654
No 429
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=57.85 E-value=9 Score=30.55 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=17.4
Q ss_pred HHhhhcCCCeEEEEEcCCCCcHHHHHH
Q 037945 165 WRCIEDHNEKVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 165 ~~~L~~~~~~vI~IvG~~G~GKTTLa~ 191 (206)
+..+..+. -+-+.++.|+|||..+-
T Consensus 68 i~~i~~~~--~~lv~a~TGsGKT~~~~ 92 (410)
T 2j0s_A 68 IKQIIKGR--DVIAQSQSGTGKTATFS 92 (410)
T ss_dssp HHHHHTTC--CEEEECCTTSSHHHHHH
T ss_pred HHHHhCCC--CEEEECCCCCCchHHHH
Confidence 33444444 47789999999996544
No 430
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=57.61 E-value=9.1 Score=30.51 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=15.5
Q ss_pred hhhcCCCeEEEEEcCCCCcHHHH
Q 037945 167 CIEDHNEKVIGLYGMGGVGKTTL 189 (206)
Q Consensus 167 ~L~~~~~~vI~IvG~~G~GKTTL 189 (206)
.+..+. -+-+.++.|+|||..
T Consensus 48 ~i~~~~--~~lv~a~TGsGKT~~ 68 (417)
T 2i4i_A 48 IIKEKR--DLMACAQTGSGKTAA 68 (417)
T ss_dssp HHHTTC--CEEEECCTTSCHHHH
T ss_pred HHccCC--CEEEEcCCCCHHHHH
Confidence 344444 567899999999973
No 431
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=57.06 E-value=9.9 Score=31.22 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=18.8
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
.+..+..+.-+.+-+.|+.|+|||..+
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHHH
Confidence 333444443348899999999999764
No 432
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=56.89 E-value=14 Score=29.22 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=21.4
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
..++..+.++-...|--+|..|+|||.-+
T Consensus 67 ~plv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 67 KKIVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hhhHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 34555556665567788999999999765
No 433
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=56.50 E-value=35 Score=21.60 Aligned_cols=59 Identities=12% Similarity=0.057 Sum_probs=39.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 037945 32 DSLNSLREAGRDLVNITRDVEARVDLAVEQR-LRPTHEVNGWLESAKIMLREVDYILHRG 90 (206)
Q Consensus 32 ~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~-~~~~~~~~~wl~~l~~~~~~~ed~ld~~ 90 (206)
.+++.|+.++......|......+.+|+... ..+++.-+.-+..-+.++.-.++-|.++
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevNk~~~~~R~~~V~~lq~Ki~el 64 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVNKSTLQSRRAAVSALETKLGEL 64 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888777777777653 3344555566666666666555555554
No 434
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=55.59 E-value=9.3 Score=30.65 Aligned_cols=26 Identities=27% Similarity=0.213 Sum_probs=17.6
Q ss_pred HHhhhcCCCeEEEEEcCCCCcHHHHHHH
Q 037945 165 WRCIEDHNEKVIGLYGMGGVGKTTLLKK 192 (206)
Q Consensus 165 ~~~L~~~~~~vI~IvG~~G~GKTTLa~~ 192 (206)
+..+.++. -+.++++.|+|||..+..
T Consensus 30 i~~i~~~~--~~lv~apTGsGKT~~~l~ 55 (414)
T 3oiy_A 30 AKRIVQGK--SFTMVAPTGVGKTTFGMM 55 (414)
T ss_dssp HHHHTTTC--CEECCSCSSSSHHHHHHH
T ss_pred HHHHhcCC--CEEEEeCCCCCHHHHHHH
Confidence 33344444 567999999999984433
No 435
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=54.64 E-value=15 Score=29.35 Aligned_cols=30 Identities=23% Similarity=0.274 Sum_probs=22.1
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
...++..+.++-...|--+|..|+|||.-+
T Consensus 69 ~~plv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 69 IKPTVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp THHHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCCcceEEEECCCCCCcceEe
Confidence 335555666666567888999999999754
No 436
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=54.54 E-value=11 Score=31.19 Aligned_cols=21 Identities=14% Similarity=-0.021 Sum_probs=17.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNN 195 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~ 195 (206)
-+.|+|+.|+|||..+-.+..
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~ 150 (510)
T 2oca_A 130 RRILNLPTSAGRSLIQALLAR 150 (510)
T ss_dssp EEEEECCSTTTHHHHHHHHHH
T ss_pred CcEEEeCCCCCHHHHHHHHHH
Confidence 678999999999998765443
No 437
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=54.46 E-value=8.2 Score=29.95 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=17.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 174 KVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+.|.|+|+ ||+||.+.+....
T Consensus 106 r~ivl~GP---gK~tl~~~L~~~~ 126 (295)
T 1kjw_A 106 RPIIILGP---TKDRANDDLLSEF 126 (295)
T ss_dssp CCEEEEST---THHHHHHHHHHHC
T ss_pred CEEEEECC---CHHHHHHHHHhhC
Confidence 47889998 6999999998754
No 438
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=53.99 E-value=12 Score=34.38 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=22.1
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHH
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKK 192 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~ 192 (206)
-.+++..+..+. .+-|+++.|+|||+.+..
T Consensus 44 Q~~aI~~il~g~--~vlv~apTGsGKTlv~~~ 73 (997)
T 4a4z_A 44 QKEAVYHLEQGD--SVFVAAHTSAGKTVVAEY 73 (997)
T ss_dssp HHHHHHHHHTTC--EEEEECCTTSCSHHHHHH
T ss_pred HHHHHHHHHcCC--CEEEEECCCCcHHHHHHH
Confidence 335556666666 789999999999976443
No 439
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=53.19 E-value=19 Score=28.69 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=22.1
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
..++..+.++--..|--+|..|+|||.-+
T Consensus 82 ~~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 82 ENILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 44566666666667888999999999764
No 440
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=53.01 E-value=17 Score=29.21 Aligned_cols=29 Identities=21% Similarity=0.200 Sum_probs=21.7
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
..++..+.++-...|--+|..|+|||.-+
T Consensus 74 ~plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 74 KSIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hhHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 34555556666667888999999999765
No 441
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=52.82 E-value=23 Score=28.75 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=24.3
Q ss_pred HHHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 161 ISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 161 ~~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+..+...|.. .+.++|+|-|.+ ||||-..++.+-.
T Consensus 35 ~~~~l~~lg~p~~~~~vI~VTGTn--GKtTT~~~l~~iL 71 (422)
T 1w78_A 35 VSLVAARLGVLKPAPFVFTVAGTN--GKGTTCRTLESIL 71 (422)
T ss_dssp HHHHHHHHTCSSCSSEEEEEECSS--CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcccCCcEEEEeCCc--ChHHHHHHHHHHH
Confidence 3445555543 456789998887 7999888887654
No 442
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=52.31 E-value=13 Score=29.73 Aligned_cols=27 Identities=33% Similarity=0.324 Sum_probs=20.0
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHH
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTL 189 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTL 189 (206)
.++..+.++--..|--+|..|+|||.-
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 455555666556788899999999954
No 443
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=52.24 E-value=14 Score=29.37 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=20.7
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
.++..+.++-...|--+|..|+|||.-+
T Consensus 85 plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 85 PLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred chhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4555556665557778999999999754
No 444
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=51.76 E-value=16 Score=33.60 Aligned_cols=30 Identities=17% Similarity=0.248 Sum_probs=22.3
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHH
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKK 192 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~ 192 (206)
-.+.+..+..+. .+-|.++.|+|||+.+..
T Consensus 91 Q~eai~~l~~g~--~vLV~apTGSGKTlva~l 120 (1010)
T 2xgj_A 91 QDTAISCIDRGE--SVLVSAHTSAGKTVVAEY 120 (1010)
T ss_dssp HHHHHHHHHHTC--EEEEECCTTSCHHHHHHH
T ss_pred HHHHHHHHHcCC--CEEEECCCCCChHHHHHH
Confidence 334555566666 788999999999998754
No 445
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=51.48 E-value=20 Score=28.79 Aligned_cols=30 Identities=23% Similarity=0.325 Sum_probs=21.8
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
...++..+.++--..|--+|..|+|||.-+
T Consensus 89 ~~plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 89 VSPLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHhCCceEEEEeecCCCCCcceec
Confidence 334555556666567888999999999754
No 446
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=51.45 E-value=19 Score=28.79 Aligned_cols=29 Identities=24% Similarity=0.226 Sum_probs=20.9
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
..++..+.++--..|--+|..|+|||.-+
T Consensus 78 ~plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 78 CPILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 34555555665557788999999999754
No 447
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=51.44 E-value=45 Score=21.29 Aligned_cols=29 Identities=17% Similarity=0.173 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhHhhh
Q 037945 67 HEVNGWLESAKIMLREVDYILHRGDEEIQ 95 (206)
Q Consensus 67 ~~~~~wl~~l~~~~~~~ed~ld~~~~~~~ 95 (206)
+.-+.-+.++.....+++++|+....++.
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r 73 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELR 73 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677799999999999999999888865
No 448
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=51.24 E-value=7.7 Score=36.27 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=23.9
Q ss_pred hcCCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 169 EDHNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 169 ~~~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.++.-..|-|.|-+|+|||.-++.|....
T Consensus 165 ~~~~~Q~i~isGeSGaGKTe~~k~~~~yl 193 (1184)
T 1i84_S 165 QDREDQSILCTGESGAGKTENTKKVIQYL 193 (1184)
T ss_dssp HHTCCEEEECCCSTTSSTTHHHHHHHHHH
T ss_pred hcCCCcEEEEecCCCCCccHHHHHHHHHH
Confidence 34555699999999999999999987654
No 449
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=50.95 E-value=19 Score=28.59 Aligned_cols=29 Identities=21% Similarity=0.277 Sum_probs=21.4
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
..++..+.++--..|--+|..|+|||.-+
T Consensus 73 ~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 73 QPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 34555566665567888999999999754
No 450
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=50.89 E-value=13 Score=34.43 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=22.9
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHH
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKK 192 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~ 192 (206)
.-...+..+..+. .+-|+|+.|+|||+.+..
T Consensus 188 ~Q~~AI~~i~~g~--dvLV~ApTGSGKTlva~l 218 (1108)
T 3l9o_A 188 FQDTAISCIDRGE--SVLVSAHTSAGKTVVAEY 218 (1108)
T ss_dssp HHHHHHHHHTTTC--CEEEECCSSSHHHHHHHH
T ss_pred HHHHHHHHHHcCC--CEEEECCCCCChHHHHHH
Confidence 3345566666665 688999999999987654
No 451
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=50.85 E-value=22 Score=28.94 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=20.7
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
.++..+.++--..|--+|..|+|||.-+
T Consensus 131 ~lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 131 QLVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHHhCCcceEEEEECCCCCCCceEe
Confidence 4555555665567788999999999754
No 452
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=50.45 E-value=15 Score=29.31 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=20.9
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
.++..+.++-...|--+|..|+|||..+
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 68 PIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 4555556665567778999999999765
No 453
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=50.44 E-value=18 Score=29.11 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=21.4
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
..++..+.++--..|--+|..|+|||.-+
T Consensus 91 ~plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 91 RPLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 34555566665567788999999999754
No 454
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=50.30 E-value=17 Score=28.96 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=21.8
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
..++..+.++--..|--+|..|+|||.-+
T Consensus 95 ~plv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 95 KPILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHhCCCceEEEEeCCCCCCceeee
Confidence 34566666666567888999999999764
No 455
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=50.19 E-value=16 Score=29.11 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=21.5
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
..++..+.++--..|--+|..|+|||.-+
T Consensus 79 ~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 79 KPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 34555566665567888999999999754
No 456
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=50.04 E-value=20 Score=28.73 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=20.8
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
.++..+.++--..|--+|..|+|||.-+
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4555556665567778999999999754
No 457
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=49.98 E-value=21 Score=28.39 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=20.5
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
.++..+.++-...|--+|..|+|||.-+
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 4555555665567888999999999754
No 458
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=49.86 E-value=18 Score=32.27 Aligned_cols=35 Identities=20% Similarity=0.105 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHH
Q 037945 158 DSIISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKK 192 (206)
Q Consensus 158 ~~~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~ 192 (206)
...+..+...+..+...-+-+.|+.|+|||..+-.
T Consensus 374 ~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall 408 (780)
T 1gm5_A 374 KRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQL 408 (780)
T ss_dssp HHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHH
T ss_pred HHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHH
Confidence 34566666655555445678899999999987654
No 459
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=49.36 E-value=10 Score=29.86 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=13.3
Q ss_pred EEEEEcCCCCcHHHHH
Q 037945 175 VIGLYGMGGVGKTTLL 190 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa 190 (206)
-+-+.++.|+|||..+
T Consensus 60 ~~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 60 DVLAQAQSGTGKTGTF 75 (394)
T ss_dssp CEEECCCSSHHHHHHH
T ss_pred CEEEECCCCChHHHHH
Confidence 4678999999999763
No 460
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=49.33 E-value=19 Score=28.75 Aligned_cols=28 Identities=32% Similarity=0.345 Sum_probs=20.9
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
.++..+.++--..|--+|..|+|||.-+
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 4555556666567888999999999764
No 461
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=48.55 E-value=25 Score=28.84 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=22.4
Q ss_pred HHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 163 EVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 163 ~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
++...|.. .+.++|+|-|.+ ||||-..++..-.
T Consensus 40 ~~l~~lg~p~~~~~vI~VTGTn--GKtTT~~~l~~iL 74 (442)
T 1o5z_A 40 MLLSKLGNPHLEYKTIHIGGTN--GKGSVANMVSNIL 74 (442)
T ss_dssp HHHHHTTCGGGSSEEEEEECSS--SHHHHHHHHHHHH
T ss_pred HHHHHcCCchhcCCEEEEECCc--CHHHHHHHHHHHH
Confidence 34444432 356789998887 7999888877654
No 462
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=48.41 E-value=23 Score=28.13 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=20.6
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
.++..+.++--..|--+|..|+|||.-+
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 4555555665557788999999999755
No 463
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=47.92 E-value=51 Score=20.98 Aligned_cols=84 Identities=17% Similarity=0.153 Sum_probs=50.2
Q ss_pred cccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHhhhhHhhhhhccCCccC
Q 037945 25 GYVCGLTDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREVDYILHRGDEEIQKTCLRKTCF 104 (206)
Q Consensus 25 ~~~~~~~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~wl~~l~~~~~~~ed~ld~~~~~~~~~~~~~~~~ 104 (206)
.++-+++.++..+..++...-..+.. . ..+.-+.-+.++.....+|+++|+....++..-
T Consensus 5 elFe~YE~df~~l~~~i~~kl~~i~~------------~-~geerk~~i~~ie~~l~EA~ell~qMelE~r~~------- 64 (102)
T 1vcs_A 5 SSGEGYEQDFAVLTAEITSKIARVPR------------L-PPDEKKQMVANVEKQLEEARELLEQMDLEVREI------- 64 (102)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHGGG------------S-CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc------------c-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-------
Confidence 45667777777766555433322211 1 124556778999999999999999988886531
Q ss_pred CCCcccccchhHHHHHHHHHHHHHHh
Q 037945 105 PGSWSSRDKLGKEASEKIVAVEELIG 130 (206)
Q Consensus 105 ~~~~~~~~~~~~~i~~~~~~~~~~~~ 130 (206)
| ...|..+-.+++.-..++..+..
T Consensus 65 p--~~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 65 P--PQSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp C--TTTHHHHHHHHHHHHHHHHHHHH
T ss_pred C--HHhHHHHHHHHHHHHHHHHHHHH
Confidence 2 12334555556554444444443
No 464
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=47.90 E-value=25 Score=28.60 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=20.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.+.++|+|-|.+ ||||-..++.+-..
T Consensus 37 ~~~~vI~VtGTn--GKtTT~~~l~~iL~ 62 (428)
T 1jbw_A 37 QQGRYIHVTGTN--GKGSAANAIAHVLE 62 (428)
T ss_dssp GSSCEEEEECSS--CHHHHHHHHHHHHH
T ss_pred hcCcEEEEECCC--ChHHHHHHHHHHHH
Confidence 356799998887 79999888876543
No 465
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=47.47 E-value=18 Score=27.86 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=17.2
Q ss_pred HHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 165 WRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 165 ~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
+..+..+.-+-+-+.++.|+|||...
T Consensus 123 i~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 123 LPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHcCCCCeEEEECCCCCCccHHH
Confidence 33344442236788999999999653
No 466
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=46.82 E-value=23 Score=27.93 Aligned_cols=29 Identities=28% Similarity=0.271 Sum_probs=21.6
Q ss_pred HHHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 162 SEVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 162 ~~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
..++..+.++-...|--+|..|+|||..+
T Consensus 70 ~~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 70 QALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 34555566666567888999999999754
No 467
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum}
Probab=46.73 E-value=8.6 Score=32.83 Aligned_cols=22 Identities=23% Similarity=0.030 Sum_probs=17.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHH
Q 037945 171 HNEKVIGLYGMGGVGKTTLLKK 192 (206)
Q Consensus 171 ~~~~vI~IvG~~G~GKTTLa~~ 192 (206)
+...-|+--+++|+|||+||-+
T Consensus 261 g~~~yvaaAfPSacGKTnlAMl 282 (610)
T 2zci_A 261 GKAYHIAAAFPSACGKTNLAMI 282 (610)
T ss_dssp SCEEEEEEECSSSHHHHHHHTC
T ss_pred CcEEEEEEecccccchhhHhhc
Confidence 3455666678999999999865
No 468
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=46.66 E-value=33 Score=29.02 Aligned_cols=34 Identities=18% Similarity=0.161 Sum_probs=21.6
Q ss_pred HHHHHHHhhhcCCCeEEEEEcCCCCcHHHHHHHHH
Q 037945 160 IISEVWRCIEDHNEKVIGLYGMGGVGKTTLLKKLN 194 (206)
Q Consensus 160 ~~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~~i~ 194 (206)
.+..+...+..+. ..+.++++.|+|||..+-.+.
T Consensus 186 ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~ 219 (590)
T 3h1t_A 186 AINRAVQSVLQGK-KRSLITMATGTGKTVVAFQIS 219 (590)
T ss_dssp HHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHH
Confidence 3444444444443 356788999999998765443
No 469
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=46.56 E-value=13 Score=16.36 Aligned_cols=13 Identities=38% Similarity=0.869 Sum_probs=10.2
Q ss_pred hhHHHHHHHHHHH
Q 037945 67 HEVNGWLESAKIM 79 (206)
Q Consensus 67 ~~~~~wl~~l~~~ 79 (206)
+.++.|+..++-+
T Consensus 8 DSV~rWmeDLr~M 20 (22)
T 3ro3_B 8 DSVQRWMEDLKLM 20 (26)
T ss_pred HHHHHHHHHHHhh
Confidence 5689999988753
No 470
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=46.39 E-value=30 Score=27.90 Aligned_cols=28 Identities=29% Similarity=0.264 Sum_probs=20.7
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
.++..+.++--..|--+|..|+|||.-+
T Consensus 106 ~lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 106 MLVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4555555665567788999999999754
No 471
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=45.75 E-value=31 Score=28.49 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=20.7
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
.++..+.++--..|--+|..|+|||.-+
T Consensus 127 plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 127 EFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred hHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 4555555665557778999999999765
No 472
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=45.51 E-value=18 Score=29.60 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=20.4
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
.++..+.++-...|--+|..|+|||.-+
T Consensus 145 plV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 145 PLVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 4555556665556677999999999764
No 473
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=45.46 E-value=33 Score=28.03 Aligned_cols=36 Identities=19% Similarity=0.210 Sum_probs=24.4
Q ss_pred HHHHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 160 IISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 160 ~~~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
.+..+...|.. ...++|+|-|.+ ||||-...+..-.
T Consensus 37 r~~~ll~~lg~p~~~~~vI~VtGTN--GKgSt~~~l~~iL 74 (437)
T 3nrs_A 37 RVKQVAERLDLLKPAPKIFTVAGTN--GKGTTCCTLEAIL 74 (437)
T ss_dssp HHHHHHHHTTCSCSSSEEEEEECSS--SHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCccccCCEEEEECCc--ChHHHHHHHHHHH
Confidence 44455555533 457899999987 6888777776544
No 474
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=44.55 E-value=20 Score=29.00 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=20.6
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
.++..+.++-...|--+|..|+|||.-+
T Consensus 125 plv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 125 PLVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 4555566665556777999999999764
No 475
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=44.43 E-value=17 Score=29.47 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=20.2
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
.++..+.++-...|--+|..|+|||.-+
T Consensus 89 plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 89 PILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp GGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 3445555665557778999999999754
No 476
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=43.51 E-value=37 Score=28.59 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=26.5
Q ss_pred HHHHHHHHhhhc---CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 159 SIISEVWRCIED---HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 159 ~~~~~l~~~L~~---~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..+..|...... .++++|+|-|.+ ||||-..+|+.-..
T Consensus 129 ~aL~~la~~~~~~p~~~~~vI~VTGTn--GKTTT~~ml~~iL~ 169 (535)
T 2wtz_A 129 GVLGGLAATVYGHPSERLTVIGITGTS--GKTTTTYLVEAGLR 169 (535)
T ss_dssp HHHHHHHHHHTTCGGGSSEEEEEESSS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccceEEEeeCCC--ChHHHHHHHHHHHH
Confidence 456666655543 256789998887 79998888876553
No 477
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=43.10 E-value=24 Score=28.81 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=21.7
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
.++..+.++--..|--+|..|+|||.-+
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 5666666776667888999999999754
No 478
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=42.35 E-value=32 Score=32.11 Aligned_cols=31 Identities=23% Similarity=0.100 Sum_probs=20.8
Q ss_pred HHHHHHhhhcCCCeEEEEEcCCCCcHHHHHH
Q 037945 161 ISEVWRCIEDHNEKVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 161 ~~~l~~~L~~~~~~vI~IvG~~G~GKTTLa~ 191 (206)
+..+...+.++...-+-++|+.|+|||..+-
T Consensus 612 i~~il~~~~~g~p~d~ll~~~TGsGKT~val 642 (1151)
T 2eyq_A 612 INAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 642 (1151)
T ss_dssp HHHHHHHHHSSSCCEEEEECCCCTTTHHHHH
T ss_pred HHHHHHHHhcCCcCcEEEECCCCCCHHHHHH
Confidence 3334443333554578899999999997654
No 479
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=42.12 E-value=19 Score=28.24 Aligned_cols=26 Identities=31% Similarity=0.563 Sum_probs=20.0
Q ss_pred CeEEEE--EcCCCCcHHHHHHHHHhhhc
Q 037945 173 EKVIGL--YGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 173 ~~vI~I--vG~~G~GKTTLa~~i~~~~~ 198 (206)
+.||+| +-.||+|||-++-.+++..+
T Consensus 36 vPVI~VGNitvGGTGKTP~vi~L~~~L~ 63 (315)
T 4ehx_A 36 VPVISVGNLSVGGSGKTSFVMYLADLLK 63 (315)
T ss_dssp SCEEEEEESBSSCCSHHHHHHHHHHHTT
T ss_pred CCEEEECCEEeCCCChHHHHHHHHHHHh
Confidence 445544 55899999999999988764
No 480
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=41.98 E-value=63 Score=20.34 Aligned_cols=53 Identities=9% Similarity=0.129 Sum_probs=36.3
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Q 037945 31 TDSLNSLREAGRDLVNITRDVEARVDLAVEQRLRPTHEVNGWLESAKIMLREV 83 (206)
Q Consensus 31 ~~~~~~l~~~l~~l~~~l~~~~~~~~~ae~~~~~~~~~~~~wl~~l~~~~~~~ 83 (206)
+...++|+.-+..|...|.|++..+..++......=..-+.|+.+++.-...+
T Consensus 35 ~~~~~El~~~l~el~e~l~DL~~SI~i~e~~~~~EI~~Rk~~v~~l~~~i~~l 87 (95)
T 2c5k_T 35 DDQEEEIQDILKDVEETIVDLDRSIIVMKRDENEDVSGREAQVKNIKQQLDAL 87 (95)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46677888888889999999998888766542111135567888877754433
No 481
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=41.92 E-value=20 Score=27.97 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=18.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
+.++|+|-|.+ ||||-..++++-.
T Consensus 107 ~~~~IaVTGTn--GKTTTt~ll~~iL 130 (326)
T 3eag_A 107 HHWVLGVAGTH--GKTTTASMLAWVL 130 (326)
T ss_dssp GSEEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCCEEEEECCC--CHHHHHHHHHHHH
Confidence 34689999886 8999988887654
No 482
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=41.27 E-value=35 Score=28.34 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=24.1
Q ss_pred HHHHHHhhhc--CCCeEEEEEcCCCCcHHHHHHHHHhhh
Q 037945 161 ISEVWRCIED--HNEKVIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 161 ~~~l~~~L~~--~~~~vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
...+...+.. ...++|+|-|.+ ||||-..++..-.
T Consensus 50 ~~~ll~~lg~p~~~~~vI~VtGTN--GKtST~~~l~~iL 86 (487)
T 2vos_A 50 ISALMDLLGSPQRSYPSIHIAGTN--GKTSVARMVDALV 86 (487)
T ss_dssp HHHHHHHTTCGGGSSCEEEEECSS--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchhcCeEEEEeCCC--CcHHHHHHHHHHH
Confidence 3345554532 356799999988 7999888877654
No 483
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=41.15 E-value=32 Score=28.74 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=17.5
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHH
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTL 189 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTL 189 (206)
.+..+..++-+-+-++++.|+|||..
T Consensus 102 ~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 102 TIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHhcCCCCeEEEECCCCCCccHH
Confidence 33344433334788999999999973
No 484
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=40.60 E-value=44 Score=27.76 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhc---CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 158 DSIISEVWRCIED---HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 158 ~~~~~~l~~~L~~---~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
...+..|...... .+.++|+|-|.+ ||||-..+|..-..
T Consensus 90 ~~aL~~la~~~~~~p~~~~~vI~VTGTn--GKTTT~~ml~~iL~ 131 (498)
T 1e8c_A 90 NERLSALAGRFYHEPSDNLRLVGVTGTN--GKTTTTQLLAQWSQ 131 (498)
T ss_dssp HHHHHHHHHHHTTCGGGSSEEEEEESSS--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCeEEEEeCCc--ChHHHHHHHHHHHH
Confidence 4456666665543 356789998887 79999888876553
No 485
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=39.99 E-value=25 Score=28.49 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=15.7
Q ss_pred hhhcCCCeEEEEEcCCCCcHHHH
Q 037945 167 CIEDHNEKVIGLYGMGGVGKTTL 189 (206)
Q Consensus 167 ~L~~~~~~vI~IvG~~G~GKTTL 189 (206)
.+..+. -+-+.++.|+|||..
T Consensus 89 ~i~~g~--d~i~~a~TGsGKT~a 109 (434)
T 2db3_A 89 VISSGR--DLMACAQTGSGKTAA 109 (434)
T ss_dssp HHHTTC--CEEEECCTTSSHHHH
T ss_pred HHhcCC--CEEEECCCCCCchHH
Confidence 344444 678899999999983
No 486
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=39.93 E-value=27 Score=28.08 Aligned_cols=28 Identities=29% Similarity=0.283 Sum_probs=20.6
Q ss_pred HHHHhhhcCCCeEEEEEcCCCCcHHHHH
Q 037945 163 EVWRCIEDHNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 163 ~l~~~L~~~~~~vI~IvG~~G~GKTTLa 190 (206)
.++..+.++-...|--+|..|+|||.-+
T Consensus 70 ~lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 70 YLVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhhHhhhcCCceEEEEECCCCCCCeEee
Confidence 3555555665557778999999999764
No 487
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=39.89 E-value=22 Score=29.17 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=19.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 173 EKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 173 ~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
.++|+|-|.+| |||-..++++-..
T Consensus 112 ~~~IaVTGTnG--KTTTt~ml~~iL~ 135 (451)
T 3lk7_A 112 SQLIGITGSNG--KTTTTTMIAEVLN 135 (451)
T ss_dssp SEEEEEECSSC--HHHHHHHHHHHHH
T ss_pred CCEEEEECCCC--HHHHHHHHHHHHH
Confidence 36999999885 9999888876543
No 488
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6- diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=39.43 E-value=24 Score=28.92 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhc-CCCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 159 SIISEVWRCIED-HNEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 159 ~~~~~l~~~L~~-~~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..+..|-..... .+.++|+|-|.+ ||||-..+|++-..
T Consensus 85 ~~l~~la~~~~~~~~~~vI~VTGTn--GKTTT~~~l~~iL~ 123 (452)
T 1gg4_A 85 LAFGELAAWVRQQVPARVVALTGSS--GKTSVKEMTAAILS 123 (452)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEECSS--CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCCC--CcHHHHHHHHHHHH
Confidence 344444444332 356789998887 79999888887664
No 489
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=39.37 E-value=15 Score=30.78 Aligned_cols=26 Identities=12% Similarity=-0.013 Sum_probs=17.6
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHHHH
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTLa~ 191 (206)
++..+.++. -+-++++.|.|||..+.
T Consensus 33 ~i~~il~g~--d~lv~apTGsGKTl~~~ 58 (523)
T 1oyw_A 33 IIDTVLSGR--DCLVVMPTGGGKSLCYQ 58 (523)
T ss_dssp HHHHHHTTC--CEEEECSCHHHHHHHHH
T ss_pred HHHHHHcCC--CEEEECCCCcHHHHHHH
Confidence 334444554 57778999999998443
No 490
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=38.17 E-value=38 Score=28.58 Aligned_cols=26 Identities=19% Similarity=0.126 Sum_probs=17.3
Q ss_pred HHHhhhcCCCeEEEEEcCCCCcHHHH
Q 037945 164 VWRCIEDHNEKVIGLYGMGGVGKTTL 189 (206)
Q Consensus 164 l~~~L~~~~~~vI~IvG~~G~GKTTL 189 (206)
.+..+..++-+-+-+.++.|+|||..
T Consensus 51 ~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 51 TIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 33334433334788899999999984
No 491
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=37.93 E-value=31 Score=15.63 Aligned_cols=10 Identities=20% Similarity=0.332 Sum_probs=3.7
Q ss_pred hHHHHHHHHH
Q 037945 33 SLNSLREAGR 42 (206)
Q Consensus 33 ~~~~l~~~l~ 42 (206)
++-.|+-+++
T Consensus 8 evgelkgevr 17 (27)
T 3v86_A 8 EVGELKGEVR 17 (27)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhHHH
Confidence 3333333333
No 492
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=37.70 E-value=21 Score=30.50 Aligned_cols=25 Identities=16% Similarity=0.005 Sum_probs=17.4
Q ss_pred HHhhhcCCCeEEEEEcCCCCcHHHHHH
Q 037945 165 WRCIEDHNEKVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 165 ~~~L~~~~~~vI~IvG~~G~GKTTLa~ 191 (206)
+..+..+. -+-++++.|.|||....
T Consensus 53 i~~il~g~--d~lv~~pTGsGKTl~~~ 77 (591)
T 2v1x_A 53 INVTMAGK--EVFLVMPTGGGKSLCYQ 77 (591)
T ss_dssp HHHHHTTC--CEEEECCTTSCTTHHHH
T ss_pred HHHHHcCC--CEEEEECCCChHHHHHH
Confidence 33444444 47789999999998544
No 493
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=37.58 E-value=49 Score=27.26 Aligned_cols=25 Identities=20% Similarity=0.333 Sum_probs=19.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHhhhc
Q 037945 172 NEKVIGLYGMGGVGKTTLLKKLNNKFR 198 (206)
Q Consensus 172 ~~~vI~IvG~~G~GKTTLa~~i~~~~~ 198 (206)
..++|+|-|.+ ||||-..+++.-..
T Consensus 113 ~~~vI~VTGTn--GKTTTt~ml~~iL~ 137 (469)
T 1j6u_A 113 KKEEFAVTGTD--GKTTTTAMVAHVLK 137 (469)
T ss_dssp CCCEEEEECSS--SHHHHHHHHHHHHH
T ss_pred CCCEEEEECCC--CHHHHHHHHHHHHH
Confidence 35699999987 69998888776543
No 494
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=37.57 E-value=32 Score=15.61 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037945 35 NSLREAGRDLVNITRDVE 52 (206)
Q Consensus 35 ~~l~~~l~~l~~~l~~~~ 52 (206)
..|-.+|+.|+..|..++
T Consensus 4 delykeledlqerlrklr 21 (27)
T 3twe_A 4 DELYKELEDLQERLRKLR 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555443
No 495
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=37.50 E-value=23 Score=29.41 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=14.9
Q ss_pred eEEEEEcCCCCcHHHHHH
Q 037945 174 KVIGLYGMGGVGKTTLLK 191 (206)
Q Consensus 174 ~vI~IvG~~G~GKTTLa~ 191 (206)
+.+-++++.|+|||..+-
T Consensus 159 ~~~ll~apTGsGKT~~~~ 176 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFA 176 (508)
T ss_dssp CCEEEECCSSTTSHHHHH
T ss_pred CCEEEECCCCccHHHHHH
Confidence 478899999999998643
No 496
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=36.94 E-value=36 Score=27.23 Aligned_cols=28 Identities=21% Similarity=0.122 Sum_probs=18.5
Q ss_pred HHHHhhhc-CCCeEEEEEcCCCCcHHHHH
Q 037945 163 EVWRCIED-HNEKVIGLYGMGGVGKTTLL 190 (206)
Q Consensus 163 ~l~~~L~~-~~~~vI~IvG~~G~GKTTLa 190 (206)
.++..+.+ +....|--+|..|+|||.-+
T Consensus 74 plv~~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 74 PLIIDLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HHHHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred hhhhhhccCCceeEEEeeCCCCCCCCEEE
Confidence 34433343 44445778999999999754
No 497
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=36.80 E-value=85 Score=20.29 Aligned_cols=17 Identities=6% Similarity=0.114 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037945 69 VNGWLESAKIMLREVDY 85 (206)
Q Consensus 69 ~~~wl~~l~~~~~~~ed 85 (206)
....+.++..+.|..|+
T Consensus 85 ~~~~~~kIq~ILYaTee 101 (106)
T 4e61_A 85 LLRFVKKVESILYATAE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccc
Confidence 34555666666665554
No 498
>2zpt_X Tyrosine-ester sulfotransferase; SULT1D1, catecholamine, sulfonation; HET: A3P GOL; 1.15A {Mus musculus} PDB: 2zvp_X* 2zvq_X* 2zyt_X* 2zyu_X* 2zyv_X* 2zyw_X*
Probab=36.43 E-value=31 Score=26.40 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHhhh
Q 037945 175 VIGLYGMGGVGKTTLLKKLNNKF 197 (206)
Q Consensus 175 vI~IvG~~G~GKTTLa~~i~~~~ 197 (206)
-|-|+|++.+| ||+++.|....
T Consensus 40 di~i~s~PKSG-TTWl~~il~~~ 61 (295)
T 2zpt_X 40 DILISTYPKSG-TTWVSEILDLI 61 (295)
T ss_dssp CEEEEESTTSS-HHHHHHHHHHH
T ss_pred CEEEEecCccc-hHHHHHHHHHH
Confidence 68999999999 77777765543
No 499
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=36.23 E-value=32 Score=18.31 Aligned_cols=17 Identities=12% Similarity=0.231 Sum_probs=7.2
Q ss_pred chHhHHHHHHHHHHHHH
Q 037945 30 LTDSLNSLREAGRDLVN 46 (206)
Q Consensus 30 ~~~~~~~l~~~l~~l~~ 46 (206)
+++.+..|+.+|+.|++
T Consensus 21 LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 21 FEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 500
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=33.84 E-value=29 Score=31.09 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=20.5
Q ss_pred CeEEEEEcC-CCCcHHHHHHHHHhhh
Q 037945 173 EKVIGLYGM-GGVGKTTLLKKLNNKF 197 (206)
Q Consensus 173 ~~vI~IvG~-~G~GKTTLa~~i~~~~ 197 (206)
.+.|-|.|. .|+||||+.--++.-.
T Consensus 34 ~~~l~I~gt~s~vGKT~vt~gL~r~l 59 (831)
T 4a0g_A 34 HPTYLIWSANTSLGKTLVSTGIAASF 59 (831)
T ss_dssp SCEEEEEESSSSSCHHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999 5799999988877654
Done!