BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037947
(780 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z6T|A Chain A, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|B Chain B, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|C Chain C, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
pdb|1Z6T|D Chain D, Structure Of The Apoptotic Protease-activating Factor 1
Bound To Adp
Length = 591
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 74/177 (41%), Gaps = 37/177 (20%)
Query: 235 EDVSERAHLLRQRLKASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSR 294
E+ +R +L R K R L+ILDDVW+ L A +C +LLT+R
Sbjct: 221 EEAKDRLRILMLR-KHPRSLLILDDVWDSWVLKAFD--------------SQCQILLTTR 265
Query: 295 RKDLLYNEMNSQKNFLINVLSDQ------EAVQLFEKMSGVFEGPLDFQNLAIKIARECG 348
K + + M + +++ V S E + LF M D A I +EC
Sbjct: 266 DKSVTDSVMGPK--YVVPVESSLGKEKGLEILSLFVNMKKA-----DLPEQAHSIIKECK 318
Query: 349 GLPVAITTVATALRNKSLFVWKDALLQL--------RSSNHRDISGLDSTVYSSVKL 397
G P+ ++ + LR+ W+ L QL R S+ D LD + SV++
Sbjct: 319 GSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEM 374
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 75/180 (41%), Gaps = 43/180 (23%)
Query: 235 EDVSERAHLLRQRLKASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSR 294
E+ +R +L R K R L+ILDDVW+ L A +C +LLT+R
Sbjct: 227 EEAKDRLRILMLR-KHPRSLLILDDVWDSWVLKAFD--------------SQCQILLTTR 271
Query: 295 RKDLLYNEMNSQKNFLINVLSDQ------EAVQLFEKMSGVFEGPLDFQNLAIKIARECG 348
K + + M + +++ V S E + LF M D A I +EC
Sbjct: 272 DKSVTDSVMGPK--YVVPVESSLGKEKGLEILSLFVNMKKA-----DLPEQAHSIIKECK 324
Query: 349 GLPVAITTVATALR---NKSLFVWKDALLQL--------RSSNHRDISGLDSTVYSSVKL 397
G P+ ++ + LR N+ W+ L QL R S+ D LD + SV++
Sbjct: 325 GSPLVVSLIGALLRDFPNR----WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEM 380
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 38.1 bits (87), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 580 LINLQTLSFECCVLGDV-ATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSK 638
L+NLQ+L E + + A++ L+ L L RNS + L I L +L+ LDL C+
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241
Query: 639 LKSIRP 644
L++ P
Sbjct: 242 LRNYPP 247
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 55/125 (44%), Gaps = 31/125 (24%)
Query: 555 EGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFE------------------------C 590
+G+ +LQ L L SLP+++ L NL++L C
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC 239
Query: 591 CVLGDVATV----GALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNV 646
L + + LK+L++ N + LP +I +LT+L+ LDL C L + P++
Sbjct: 240 TALRNYPPIFGGRAPLKRLILKDCSN--LLTLPLDIHRLTQLEKLDLRGCVNLSRL-PSL 296
Query: 647 ISNLP 651
I+ LP
Sbjct: 297 IAQLP 301
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 43/180 (23%)
Query: 235 EDVSERAHLLRQRLKASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSR 294
E+ +R +L R K R L+ILDDVW+ L A + N+ C +LLT+R
Sbjct: 221 EEAKDRLRVLMLR-KHPRSLLILDDVWDPWVLKA-------FDNQ-------CQILLTTR 265
Query: 295 RKDLLYNEMNSQKNFLINVLS------DQEAVQLFEKMSGVFEGPLDFQNLAIKIARECG 348
K + + M + ++ V S E + LF M D A I +EC
Sbjct: 266 DKSVTDSVMGPKH--VVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECK 318
Query: 349 GLPVAITTVATALR---NKSLFVWKDALLQL--------RSSNHRDISGLDSTVYSSVKL 397
G P+ ++ + LR N+ W L QL R S+ D LD + SV++
Sbjct: 319 GSPLVVSLIGALLRDFPNR----WAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEM 374
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 599 VGALKKLVILSFRNSHIE-QLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELY 657
+G++ L IL+ ++ I +P+E+G L L +LDLS+ +KL P +S L L E+
Sbjct: 649 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEID 707
Query: 658 MGNS 661
+ N+
Sbjct: 708 LSNN 711
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 599 VGALKKLVILSFRNSHIE-QLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELY 657
+G++ L IL+ ++ I +P+E+G L L +LDLS+ +KL P +S L L E+
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS-NKLDGRIPQAMSALTMLTEID 710
Query: 658 MGNS 661
+ N+
Sbjct: 711 LSNN 714
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 73/177 (41%), Gaps = 37/177 (20%)
Query: 235 EDVSERAHLLRQRLKASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSR 294
E+ +R +L R K R L+ILDDVW+ L A + N+ C +LLT+
Sbjct: 228 EEAKDRLRVLMLR-KHPRSLLILDDVWDPWVLKA-------FDNQ-------CQILLTTS 272
Query: 295 RKDLLYNEMNSQKNFLINVLS------DQEAVQLFEKMSGVFEGPLDFQNLAIKIARECG 348
K + + M + ++ V S E + LF M D A I +EC
Sbjct: 273 DKSVTDSVMGPKH--VVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECK 325
Query: 349 GLPVAITTVATALRNKSLFVWKDALLQL--------RSSNHRDISGLDSTVYSSVKL 397
G P+ ++ + LR+ W L QL R S+ D LD + SV++
Sbjct: 326 GSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEM 381
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 30/166 (18%)
Query: 575 STLGCLINLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLS 634
+TL L L+ + C L + G L L L ++ ++ LP L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 635 -----------------------NCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQN 671
++LK++ P +++ P+LE+L + N+
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-------DLT 161
Query: 672 NASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVW 717
LN L L TL + +P+ F L + G+ W
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 30/166 (18%)
Query: 575 STLGCLINLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLS 634
+TL L L+ + C L + G L L L ++ ++ LP L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 635 -----------------------NCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQN 671
++LK++ P +++ P+LE+L + N+
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-------NLT 161
Query: 672 NASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVW 717
LN L L TL + +P+ F L + G+ W
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 30/166 (18%)
Query: 575 STLGCLINLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLS 634
+TL L L+ + C L + G L L L ++ ++ LP L L +LD+S
Sbjct: 50 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 109
Query: 635 -----------------------NCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQN 671
++LK++ P +++ P+LE+L + N+
Sbjct: 110 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-------NLT 162
Query: 672 NASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVW 717
LN L L TL + +P+ F L + G+ W
Sbjct: 163 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 208
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 30/166 (18%)
Query: 575 STLGCLINLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLS 634
+TL L L+ + C L + G L L L ++ ++ LP L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 635 -----------------------NCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQN 671
++LK++ P +++ P+LE+L + N+
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-------QLT 161
Query: 672 NASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVW 717
LN L L TL + +P+ F L + G+ W
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 30/166 (18%)
Query: 575 STLGCLINLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLS 634
+TL L L+ + C L + G L L L ++ ++ LP L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 635 -----------------------NCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQN 671
++LK++ P +++ P+LE+L + N+
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-------QLT 161
Query: 672 NASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVW 717
LN L L TL + +P+ F L + G+ W
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 580 LINLQTLSFECCVLGDVAT--VGALKKLVILSFRNSHIEQLPE-EIGQLTRLKLLDLSNC 636
L +L+ L+ E C L + T + L L++L R+ +I + + +L RLK+L++S+
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210
Query: 637 SKLKSIRPNVISNL 650
L ++ PN + L
Sbjct: 211 PYLDTMTPNCLYGL 224
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 30/166 (18%)
Query: 575 STLGCLINLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLS 634
+TL L L+ + C L + G L L L ++ ++ LP L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 635 -----------------------NCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQN 671
++LK++ P +++ P+LE+L + N+
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-------QLT 161
Query: 672 NASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVW 717
LN L L TL + +P+ F L + G+ W
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 62/166 (37%), Gaps = 30/166 (18%)
Query: 575 STLGCLINLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLS 634
+TL L L+ + C L + G L L L ++ ++ LP L L +LD+S
Sbjct: 49 ATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108
Query: 635 -----------------------NCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQN 671
++LK++ P +++ P+LE+L + N+
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-------QLT 161
Query: 672 NASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVW 717
LN L L TL + +P+ F L + G+ W
Sbjct: 162 ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 71/190 (37%), Gaps = 40/190 (21%)
Query: 66 EDVKCW-LSHVDRFTENVEAILADEGEAKKPCFLGLCPNLFKRYNLSKQAGKAARE--GS 122
E VK W LS VD+ + + K CF+G YN K RE G
Sbjct: 555 ESVKRWDLSLVDQMPQQM-----------KICFVGF-------YNTFNDIAKEGRERQGR 596
Query: 123 DLLAK----GNFNTTSYTPAPEWTETLHLRGYEQFESRMPTFQDIMEALKDDXXXXXXXX 178
D+L +YT EW+E ++ P+F + +E
Sbjct: 597 DVLGYIQNVWKVQLEAYTKEAEWSEAKYV----------PSFNEYIENASVSIALGTVVL 646
Query: 179 XXXXXXKTTLVKQVARRVMEDKLFDEVVMV---VVSQKPDYKA--IQNEIAGALGLFLGE 233
L +V ++ + F +++ + +V+ Y+A Q E+A A+ ++ +
Sbjct: 647 ISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKD 706
Query: 234 HEDVSERAHL 243
H +SE L
Sbjct: 707 HPKISEEEAL 716
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 36/115 (31%), Positives = 46/115 (40%), Gaps = 26/115 (22%)
Query: 556 GVPS-LQVLSLNGFHFPSL-PSTLGCLINLQTLSFECCVLGDVATVGALKKLVILSFRNS 613
G+P+ Q L LN L P L+NLQ L F L + T G KL
Sbjct: 30 GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPT-GVFDKLT------- 81
Query: 614 HIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIE 668
QLT+L L D + LKSI NL L +Y+ N+ W+ E
Sbjct: 82 ----------QLTQLDLND----NHLKSIPRGAFDNLKSLTHIYLYNN--PWDCE 120
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 553 FFEGVPSLQVLSLNGFHFP 571
F+G+P+LQ L+L G HFP
Sbjct: 444 LFDGLPALQHLNLQGNHFP 462
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,106,762
Number of Sequences: 62578
Number of extensions: 842592
Number of successful extensions: 2364
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 2349
Number of HSP's gapped (non-prelim): 67
length of query: 780
length of database: 14,973,337
effective HSP length: 106
effective length of query: 674
effective length of database: 8,340,069
effective search space: 5621206506
effective search space used: 5621206506
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)