Query 037947
Match_columns 780
No_of_seqs 447 out of 4708
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 06:00:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037947.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037947hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 1.8E-85 3.9E-90 754.7 44.1 617 32-659 22-676 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.1E-55 6.8E-60 533.3 46.4 565 149-765 182-819 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 4.1E-44 9E-49 374.7 19.9 277 156-441 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.8 9.4E-18 2E-22 205.4 16.8 236 512-758 94-342 (968)
5 PLN00113 leucine-rich repeat r 99.7 2.3E-17 5E-22 202.0 16.5 236 512-757 119-365 (968)
6 KOG4194 Membrane glycoprotein 99.7 8.4E-18 1.8E-22 175.4 1.7 257 513-780 151-422 (873)
7 KOG0444 Cytoskeletal regulator 99.6 5.6E-18 1.2E-22 177.6 -4.5 198 512-717 56-258 (1255)
8 KOG0444 Cytoskeletal regulator 99.6 1.6E-17 3.4E-22 174.2 -2.7 239 512-762 104-376 (1255)
9 PLN03210 Resistant to P. syrin 99.6 1.8E-14 3.9E-19 176.8 20.1 246 512-767 590-888 (1153)
10 KOG4194 Membrane glycoprotein 99.6 1.4E-15 2.9E-20 159.1 5.5 244 512-757 103-374 (873)
11 KOG0617 Ras suppressor protein 99.5 1.6E-16 3.4E-21 140.9 -5.5 167 523-701 23-192 (264)
12 KOG0472 Leucine-rich repeat pr 99.5 1.5E-15 3.2E-20 152.2 -4.6 201 513-717 208-471 (565)
13 KOG0617 Ras suppressor protein 99.4 4.8E-15 1E-19 131.6 -4.5 149 511-663 33-185 (264)
14 PRK04841 transcriptional regul 99.4 2E-11 4.3E-16 149.0 24.1 292 150-487 13-332 (903)
15 KOG0472 Leucine-rich repeat pr 99.4 2.2E-15 4.7E-20 151.0 -9.2 243 512-768 46-294 (565)
16 PRK15370 E3 ubiquitin-protein 99.4 3.2E-12 6.9E-17 146.8 13.3 221 512-758 200-425 (754)
17 PRK15387 E3 ubiquitin-protein 99.3 6.9E-12 1.5E-16 143.1 13.6 217 512-759 223-456 (788)
18 PRK15370 E3 ubiquitin-protein 99.3 5.2E-12 1.1E-16 145.1 11.9 134 513-661 222-356 (754)
19 PRK15387 E3 ubiquitin-protein 99.3 2.2E-11 4.7E-16 139.1 16.2 233 511-779 201-450 (788)
20 PF01637 Arch_ATPase: Archaeal 99.3 1.3E-11 2.7E-16 125.0 9.9 201 153-356 1-233 (234)
21 TIGR03015 pepcterm_ATPase puta 99.3 9.7E-10 2.1E-14 113.7 23.8 185 169-361 40-242 (269)
22 COG2909 MalT ATP-dependent tra 99.3 1.2E-10 2.6E-15 128.9 16.5 293 150-489 18-340 (894)
23 KOG0618 Serine/threonine phosp 99.2 4.1E-13 8.8E-18 148.4 -2.9 194 512-715 220-418 (1081)
24 PRK00411 cdc6 cell division co 99.2 1.5E-09 3.2E-14 118.9 22.1 292 150-465 29-356 (394)
25 KOG0618 Serine/threonine phosp 99.2 6.6E-12 1.4E-16 139.0 1.0 238 535-779 23-315 (1081)
26 PF05729 NACHT: NACHT domain 99.1 4.7E-10 1E-14 106.8 11.5 149 173-327 1-163 (166)
27 TIGR02928 orc1/cdc6 family rep 99.1 7.3E-09 1.6E-13 112.3 21.0 298 150-466 14-349 (365)
28 KOG4658 Apoptotic ATPase [Sign 99.1 3.1E-10 6.8E-15 132.6 10.8 235 522-766 512-788 (889)
29 TIGR00635 ruvB Holliday juncti 99.1 4.2E-09 9.2E-14 110.9 17.6 274 150-467 3-289 (305)
30 KOG0532 Leucine-rich repeat (L 99.1 7.8E-12 1.7E-16 131.3 -3.5 173 515-701 79-253 (722)
31 PRK00080 ruvB Holliday junctio 99.0 8.9E-09 1.9E-13 109.2 18.8 276 148-467 22-310 (328)
32 KOG0532 Leucine-rich repeat (L 99.0 2.8E-11 6.1E-16 127.2 -4.5 125 531-661 119-244 (722)
33 PF14580 LRR_9: Leucine-rich r 98.9 1.6E-09 3.5E-14 101.6 5.3 128 557-690 18-148 (175)
34 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.4E-14 102.7 3.7 127 577-711 15-147 (175)
35 KOG4237 Extracellular matrix p 98.8 3.7E-10 8E-15 113.9 -1.1 90 501-592 58-151 (498)
36 KOG4237 Extracellular matrix p 98.8 3.9E-10 8.5E-15 113.7 -1.0 242 520-765 55-338 (498)
37 PRK13342 recombination factor 98.8 5.9E-08 1.3E-12 106.1 14.7 180 148-361 9-200 (413)
38 cd00116 LRR_RI Leucine-rich re 98.8 3.3E-09 7.3E-14 112.8 4.3 198 513-715 25-261 (319)
39 KOG1259 Nischarin, modulator o 98.8 8E-10 1.7E-14 107.3 -1.0 136 557-701 283-418 (490)
40 COG2256 MGS1 ATPase related to 98.8 1.6E-07 3.6E-12 96.1 15.3 177 150-360 23-215 (436)
41 COG3899 Predicted ATPase [Gene 98.7 2.4E-07 5.2E-12 109.1 18.0 265 153-432 2-333 (849)
42 cd00116 LRR_RI Leucine-rich re 98.7 2.6E-09 5.6E-14 113.6 1.4 226 531-762 21-291 (319)
43 KOG3207 Beta-tubulin folding c 98.7 8.3E-09 1.8E-13 105.8 3.2 200 512-713 122-335 (505)
44 PRK06893 DNA replication initi 98.7 3.7E-07 8E-12 91.3 14.3 156 170-360 37-206 (229)
45 PRK12402 replication factor C 98.7 5.2E-07 1.1E-11 96.7 16.2 203 147-358 11-227 (337)
46 PF13173 AAA_14: AAA domain 98.7 6.4E-08 1.4E-12 87.3 7.6 120 172-318 2-126 (128)
47 TIGR03420 DnaA_homol_Hda DnaA 98.6 5.8E-07 1.3E-11 90.2 14.4 169 156-358 22-202 (226)
48 PRK04195 replication factor C 98.6 2.7E-06 5.9E-11 95.0 21.0 187 146-362 9-207 (482)
49 PLN03025 replication factor C 98.6 6.8E-07 1.5E-11 94.4 15.2 188 146-356 8-199 (319)
50 COG1474 CDC6 Cdc6-related prot 98.6 7.3E-06 1.6E-10 87.0 20.9 201 152-358 18-239 (366)
51 PTZ00112 origin recognition co 98.6 1.7E-06 3.8E-11 97.3 16.5 206 150-361 754-986 (1164)
52 PRK14949 DNA polymerase III su 98.5 1.1E-06 2.4E-11 100.5 15.2 185 148-357 13-220 (944)
53 PRK14961 DNA polymerase III su 98.5 2.8E-06 6E-11 91.2 17.6 194 148-357 13-220 (363)
54 PRK00440 rfc replication facto 98.5 2.4E-06 5.1E-11 90.8 17.1 193 141-358 7-204 (319)
55 PRK05564 DNA polymerase III su 98.5 2.8E-06 6.1E-11 89.5 16.7 177 151-356 4-189 (313)
56 KOG1259 Nischarin, modulator o 98.5 1.2E-08 2.6E-13 99.3 -1.3 120 513-635 286-408 (490)
57 PF13401 AAA_22: AAA domain; P 98.5 3.9E-07 8.4E-12 82.8 8.4 116 171-295 3-125 (131)
58 COG4886 Leucine-rich repeat (L 98.5 1.1E-07 2.5E-12 104.1 5.7 172 513-697 118-292 (394)
59 TIGR02903 spore_lon_C ATP-depe 98.5 2.9E-06 6.3E-11 96.8 16.9 205 148-360 151-398 (615)
60 PRK07003 DNA polymerase III su 98.5 2.6E-06 5.7E-11 95.5 15.9 188 148-361 13-225 (830)
61 PRK12323 DNA polymerase III su 98.5 2E-06 4.4E-11 95.1 14.7 180 148-357 13-225 (700)
62 COG4886 Leucine-rich repeat (L 98.5 1.4E-07 3E-12 103.5 5.5 173 530-714 113-287 (394)
63 PTZ00202 tuzin; Provisional 98.4 1.2E-05 2.5E-10 84.3 18.4 167 146-327 257-434 (550)
64 cd00009 AAA The AAA+ (ATPases 98.4 1.5E-06 3.3E-11 80.4 10.9 129 154-297 1-131 (151)
65 PF05496 RuvB_N: Holliday junc 98.4 1.7E-05 3.6E-10 76.3 17.7 186 147-361 20-225 (233)
66 PF13191 AAA_16: AAA ATPase do 98.4 6.1E-07 1.3E-11 86.9 8.3 74 152-227 1-82 (185)
67 PRK14956 DNA polymerase III su 98.4 2E-06 4.3E-11 92.8 12.7 198 147-356 14-221 (484)
68 PRK06645 DNA polymerase III su 98.4 7.2E-06 1.6E-10 90.5 17.3 197 147-356 17-228 (507)
69 PRK08084 DNA replication initi 98.4 4.9E-06 1.1E-10 83.5 14.8 170 158-360 31-212 (235)
70 PRK14963 DNA polymerase III su 98.4 6.5E-06 1.4E-10 91.3 17.0 196 148-355 11-215 (504)
71 COG3903 Predicted ATPase [Gene 98.4 3.4E-07 7.3E-12 94.6 6.0 288 172-487 14-314 (414)
72 KOG2028 ATPase related to the 98.4 2.9E-06 6.2E-11 85.3 12.1 162 163-353 153-332 (554)
73 PRK14957 DNA polymerase III su 98.4 8.8E-06 1.9E-10 90.4 17.2 184 148-357 13-221 (546)
74 PRK14960 DNA polymerase III su 98.4 6.9E-06 1.5E-10 91.3 16.2 185 148-357 12-219 (702)
75 cd01128 rho_factor Transcripti 98.4 6.9E-07 1.5E-11 89.4 7.4 92 171-263 15-115 (249)
76 PRK09112 DNA polymerase III su 98.4 6.4E-06 1.4E-10 87.1 14.7 199 146-357 18-240 (351)
77 PRK09376 rho transcription ter 98.4 1.4E-06 3E-11 90.7 9.5 99 163-263 159-268 (416)
78 PRK14962 DNA polymerase III su 98.4 1.1E-05 2.3E-10 88.9 16.9 188 148-360 11-222 (472)
79 PRK14964 DNA polymerase III su 98.4 8.7E-06 1.9E-10 89.1 16.1 183 148-355 10-215 (491)
80 PRK08727 hypothetical protein; 98.4 9.2E-06 2E-10 81.4 15.0 175 150-354 18-201 (233)
81 PRK13341 recombination factor 98.4 4.9E-06 1.1E-10 95.8 14.5 175 147-355 24-215 (725)
82 PRK07994 DNA polymerase III su 98.3 7.9E-06 1.7E-10 92.1 15.3 195 148-358 13-221 (647)
83 TIGR00678 holB DNA polymerase 98.3 1.2E-05 2.7E-10 77.9 14.8 160 162-353 3-187 (188)
84 TIGR02397 dnaX_nterm DNA polym 98.3 1.9E-05 4.1E-10 85.3 17.5 185 148-358 11-219 (355)
85 PRK05896 DNA polymerase III su 98.3 9.3E-06 2E-10 90.2 15.1 194 147-356 12-219 (605)
86 PLN03150 hypothetical protein; 98.3 1.5E-06 3.2E-11 100.1 9.1 102 560-662 420-526 (623)
87 PRK14958 DNA polymerase III su 98.3 9.2E-06 2E-10 90.3 14.6 184 148-356 13-219 (509)
88 PF05621 TniB: Bacterial TniB 98.3 1.8E-05 3.9E-10 79.7 15.2 194 158-355 44-259 (302)
89 PRK07940 DNA polymerase III su 98.3 1.9E-05 4E-10 84.8 16.2 172 150-357 4-213 (394)
90 PRK08691 DNA polymerase III su 98.3 1.5E-05 3.2E-10 89.6 15.8 185 148-357 13-220 (709)
91 PRK07471 DNA polymerase III su 98.3 2.8E-05 6E-10 82.8 17.3 196 147-357 15-238 (365)
92 KOG3207 Beta-tubulin folding c 98.3 1.2E-07 2.6E-12 97.5 -0.6 173 513-692 148-336 (505)
93 PRK14951 DNA polymerase III su 98.3 2.1E-05 4.5E-10 88.6 16.2 197 148-357 13-225 (618)
94 KOG0989 Replication factor C, 98.2 1E-05 2.2E-10 80.1 11.9 194 141-357 26-230 (346)
95 PRK14955 DNA polymerase III su 98.2 1.7E-05 3.6E-10 86.3 14.6 200 148-356 13-227 (397)
96 PLN03150 hypothetical protein; 98.2 2.8E-06 6.1E-11 97.7 8.5 81 583-664 420-503 (623)
97 PRK09111 DNA polymerase III su 98.2 2.8E-05 6.1E-10 87.8 16.0 198 148-358 21-234 (598)
98 TIGR01242 26Sp45 26S proteasom 98.2 5.4E-05 1.2E-09 81.6 17.4 180 149-351 120-328 (364)
99 PRK14969 DNA polymerase III su 98.2 2.3E-05 4.9E-10 87.8 14.8 182 148-354 13-217 (527)
100 PF13855 LRR_8: Leucine rich r 98.2 1.8E-06 3.9E-11 66.3 3.9 59 533-592 1-60 (61)
101 PRK14970 DNA polymerase III su 98.2 5.8E-05 1.2E-09 81.7 16.6 184 148-356 14-208 (367)
102 PRK09087 hypothetical protein; 98.1 2.6E-05 5.6E-10 77.5 12.4 146 171-359 43-197 (226)
103 PRK08903 DnaA regulatory inact 98.1 3.8E-05 8.2E-10 77.0 13.6 172 151-361 18-203 (227)
104 TIGR03345 VI_ClpV1 type VI sec 98.1 5.2E-05 1.1E-09 89.7 16.8 183 149-350 185-389 (852)
105 PF00308 Bac_DnaA: Bacterial d 98.1 3.5E-05 7.6E-10 76.2 12.6 167 172-357 34-208 (219)
106 PRK14952 DNA polymerase III su 98.1 7.4E-05 1.6E-09 83.9 16.5 197 148-360 10-223 (584)
107 KOG2227 Pre-initiation complex 98.1 0.00021 4.6E-09 75.0 18.3 198 148-351 147-362 (529)
108 PRK07764 DNA polymerase III su 98.1 6.5E-05 1.4E-09 87.8 16.4 178 148-355 12-219 (824)
109 PRK05642 DNA replication initi 98.1 6.3E-05 1.4E-09 75.4 14.3 154 173-360 46-211 (234)
110 PRK14954 DNA polymerase III su 98.1 8.3E-05 1.8E-09 84.2 16.7 197 148-353 13-224 (620)
111 PHA02544 44 clamp loader, smal 98.1 4.2E-05 9.1E-10 81.0 13.5 154 141-325 11-171 (316)
112 TIGR00767 rho transcription te 98.1 1E-05 2.2E-10 84.9 8.4 93 170-263 166-267 (415)
113 PRK14959 DNA polymerase III su 98.1 6.4E-05 1.4E-09 84.2 15.1 199 148-362 13-226 (624)
114 PF14516 AAA_35: AAA-like doma 98.1 0.00013 2.8E-09 77.2 16.7 207 150-364 10-246 (331)
115 PRK07133 DNA polymerase III su 98.1 8.7E-05 1.9E-09 84.4 16.1 191 148-357 15-219 (725)
116 PRK14087 dnaA chromosomal repl 98.1 5.6E-05 1.2E-09 83.1 14.2 169 173-361 142-323 (450)
117 PF13855 LRR_8: Leucine rich r 98.0 3.5E-06 7.5E-11 64.7 3.3 58 603-661 1-59 (61)
118 PRK14971 DNA polymerase III su 98.0 0.00013 2.9E-09 83.0 17.2 184 148-357 14-222 (614)
119 PRK03992 proteasome-activating 98.0 5.5E-05 1.2E-09 81.9 13.3 179 150-351 130-337 (389)
120 PRK14950 DNA polymerase III su 98.0 0.00017 3.7E-09 82.4 17.4 197 148-359 13-223 (585)
121 PRK08451 DNA polymerase III su 98.0 0.00025 5.4E-09 78.6 17.4 186 148-358 11-219 (535)
122 KOG0991 Replication factor C, 98.0 4.6E-05 9.9E-10 72.2 9.9 109 141-263 17-125 (333)
123 TIGR02639 ClpA ATP-dependent C 98.0 0.00011 2.3E-09 86.5 15.5 161 149-327 180-358 (731)
124 PRK06305 DNA polymerase III su 98.0 0.00026 5.6E-09 77.9 17.2 181 148-354 14-219 (451)
125 PRK14953 DNA polymerase III su 98.0 0.00022 4.8E-09 78.9 16.7 181 148-358 13-221 (486)
126 KOG0531 Protein phosphatase 1, 97.9 8.7E-07 1.9E-11 97.4 -3.0 158 555-715 92-266 (414)
127 KOG2543 Origin recognition com 97.9 0.00013 2.7E-09 74.7 12.2 167 151-326 6-192 (438)
128 PRK14948 DNA polymerase III su 97.9 0.00041 8.9E-09 79.1 17.5 198 148-359 13-224 (620)
129 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.4E-10 55.9 3.5 37 559-595 2-38 (44)
130 PRK14088 dnaA chromosomal repl 97.9 0.00017 3.6E-09 79.3 13.3 182 172-376 130-332 (440)
131 TIGR00362 DnaA chromosomal rep 97.8 0.00032 6.9E-09 76.9 15.4 185 173-376 137-337 (405)
132 CHL00095 clpC Clp protease ATP 97.8 0.00022 4.8E-09 85.0 15.0 162 150-326 178-353 (821)
133 TIGR02881 spore_V_K stage V sp 97.8 0.00011 2.4E-09 75.3 10.7 141 171-328 41-192 (261)
134 PRK14965 DNA polymerase III su 97.8 0.0003 6.4E-09 80.0 15.1 197 148-360 13-224 (576)
135 PRK06647 DNA polymerase III su 97.8 0.00061 1.3E-08 76.8 17.3 194 148-357 13-220 (563)
136 CHL00181 cbbX CbbX; Provisiona 97.8 0.00042 9E-09 71.5 14.8 138 173-328 60-210 (287)
137 TIGR02880 cbbX_cfxQ probable R 97.8 0.00018 4E-09 74.2 12.0 136 174-328 60-209 (284)
138 PRK11331 5-methylcytosine-spec 97.8 0.0002 4.4E-09 76.6 12.1 108 151-263 175-284 (459)
139 PRK00149 dnaA chromosomal repl 97.8 0.00043 9.4E-09 76.8 15.1 181 173-376 149-349 (450)
140 PRK05563 DNA polymerase III su 97.8 0.00094 2E-08 75.6 17.6 193 148-356 13-219 (559)
141 KOG0531 Protein phosphatase 1, 97.7 3.6E-06 7.7E-11 92.6 -1.9 170 512-697 96-270 (414)
142 TIGR03346 chaperone_ClpB ATP-d 97.7 0.00061 1.3E-08 81.5 16.6 160 149-327 171-349 (852)
143 TIGR03689 pup_AAA proteasome A 97.7 0.00024 5.1E-09 78.3 12.0 165 150-328 181-379 (512)
144 KOG1859 Leucine-rich repeat pr 97.7 1.3E-06 2.9E-11 95.1 -5.6 126 560-695 166-292 (1096)
145 PTZ00361 26 proteosome regulat 97.7 0.00067 1.5E-08 73.7 14.8 180 149-351 181-389 (438)
146 KOG3665 ZYG-1-like serine/thre 97.7 1.9E-05 4.2E-10 90.6 3.2 124 511-635 122-259 (699)
147 PRK12422 chromosomal replicati 97.7 0.00054 1.2E-08 75.1 14.3 158 173-351 142-307 (445)
148 PRK07399 DNA polymerase III su 97.7 0.0014 3E-08 68.5 16.6 195 151-358 4-222 (314)
149 COG1373 Predicted ATPase (AAA+ 97.7 0.00034 7.4E-09 75.7 12.0 165 156-356 22-191 (398)
150 KOG2120 SCF ubiquitin ligase, 97.7 3E-06 6.4E-11 83.1 -3.6 170 513-691 187-372 (419)
151 PF05673 DUF815: Protein of un 97.7 0.0018 3.9E-08 63.4 15.4 53 148-200 24-80 (249)
152 PTZ00454 26S protease regulato 97.6 0.00089 1.9E-08 72.2 14.5 180 149-351 143-351 (398)
153 PRK06620 hypothetical protein; 97.6 0.00022 4.7E-09 70.3 9.0 138 173-356 45-188 (214)
154 PRK05707 DNA polymerase III su 97.6 0.00097 2.1E-08 70.1 14.4 151 172-357 22-203 (328)
155 KOG1909 Ran GTPase-activating 97.6 1E-05 2.2E-10 81.5 -0.7 181 531-715 90-309 (382)
156 TIGR00763 lon ATP-dependent pr 97.6 0.0016 3.5E-08 77.1 17.5 165 151-327 320-505 (775)
157 PRK10865 protein disaggregatio 97.6 0.00057 1.2E-08 81.4 13.7 157 149-327 176-354 (857)
158 PRK15386 type III secretion pr 97.6 0.00021 4.5E-09 75.7 8.8 132 555-714 49-187 (426)
159 PF00004 AAA: ATPase family as 97.6 7.2E-05 1.6E-09 67.7 4.8 23 175-197 1-23 (132)
160 smart00382 AAA ATPases associa 97.6 0.00022 4.8E-09 65.2 8.2 91 172-266 2-93 (148)
161 PF12799 LRR_4: Leucine Rich r 97.6 8E-05 1.7E-09 52.3 3.9 38 604-642 2-39 (44)
162 KOG3665 ZYG-1-like serine/thre 97.6 4.9E-05 1.1E-09 87.4 4.1 130 532-662 121-261 (699)
163 PRK14086 dnaA chromosomal repl 97.6 0.0012 2.6E-08 73.8 14.3 160 173-355 315-486 (617)
164 PRK10536 hypothetical protein; 97.5 0.00097 2.1E-08 66.1 12.1 58 148-207 52-109 (262)
165 PRK11034 clpA ATP-dependent Cl 97.5 0.00013 2.7E-09 84.8 6.9 160 150-327 185-362 (758)
166 CHL00176 ftsH cell division pr 97.5 0.0023 5.1E-08 73.1 16.6 178 150-349 182-386 (638)
167 KOG1859 Leucine-rich repeat pr 97.5 1.5E-06 3.3E-11 94.7 -8.7 123 534-663 165-291 (1096)
168 COG1222 RPT1 ATP-dependent 26S 97.5 0.0034 7.3E-08 64.1 15.4 199 149-377 149-393 (406)
169 COG0466 Lon ATP-dependent Lon 97.5 0.00081 1.7E-08 74.6 11.9 161 152-327 324-508 (782)
170 TIGR01241 FtsH_fam ATP-depende 97.5 0.0024 5.1E-08 71.9 16.2 181 149-351 53-260 (495)
171 TIGR00602 rad24 checkpoint pro 97.5 0.00075 1.6E-08 76.4 11.7 216 140-361 73-327 (637)
172 COG2255 RuvB Holliday junction 97.5 0.0072 1.6E-07 59.8 16.6 186 148-362 23-228 (332)
173 PRK06090 DNA polymerase III su 97.4 0.011 2.3E-07 61.7 18.4 189 159-375 11-216 (319)
174 PRK12608 transcription termina 97.4 0.0016 3.4E-08 68.3 12.1 102 160-262 120-231 (380)
175 PRK08058 DNA polymerase III su 97.4 0.0034 7.5E-08 66.4 14.6 145 153-326 7-181 (329)
176 COG0593 DnaA ATPase involved i 97.4 0.0011 2.5E-08 70.3 10.8 139 171-328 112-258 (408)
177 PRK08118 topology modulation p 97.4 0.00011 2.4E-09 69.4 2.8 35 173-207 2-37 (167)
178 KOG2120 SCF ubiquitin ligase, 97.4 6.7E-06 1.4E-10 80.7 -5.5 172 534-713 186-372 (419)
179 PHA00729 NTP-binding motif con 97.4 0.0021 4.5E-08 62.8 11.6 35 162-196 7-41 (226)
180 PRK08116 hypothetical protein; 97.4 0.00061 1.3E-08 69.6 8.4 103 173-296 115-221 (268)
181 KOG0741 AAA+-type ATPase [Post 97.4 0.0027 5.9E-08 67.7 13.1 168 171-362 537-717 (744)
182 PF10443 RNA12: RNA12 protein; 97.3 0.0092 2E-07 63.3 17.0 212 156-374 1-297 (431)
183 PRK08769 DNA polymerase III su 97.3 0.0076 1.6E-07 62.8 16.1 180 158-357 11-208 (319)
184 COG3267 ExeA Type II secretory 97.3 0.017 3.8E-07 56.4 17.1 184 169-360 48-248 (269)
185 PRK15386 type III secretion pr 97.3 0.0013 2.8E-08 69.9 9.6 70 512-592 53-123 (426)
186 KOG2982 Uncharacterized conser 97.3 0.00027 5.9E-09 69.6 4.3 83 531-613 69-156 (418)
187 PF04665 Pox_A32: Poxvirus A32 97.3 0.0006 1.3E-08 67.3 6.7 37 174-212 15-51 (241)
188 KOG2004 Mitochondrial ATP-depe 97.2 0.0053 1.1E-07 68.0 14.3 98 151-263 411-517 (906)
189 PRK06871 DNA polymerase III su 97.2 0.012 2.7E-07 61.4 16.5 176 159-354 10-200 (325)
190 PF13177 DNA_pol3_delta2: DNA 97.2 0.0023 4.9E-08 60.1 10.1 137 155-315 1-162 (162)
191 KOG4579 Leucine-rich repeat (L 97.2 2.4E-05 5.2E-10 68.0 -3.0 105 516-621 32-141 (177)
192 KOG1644 U2-associated snRNP A' 97.2 0.00052 1.1E-08 64.1 5.4 97 515-612 46-149 (233)
193 KOG1644 U2-associated snRNP A' 97.2 0.00049 1.1E-08 64.3 5.2 105 582-691 43-149 (233)
194 CHL00195 ycf46 Ycf46; Provisio 97.2 0.0031 6.7E-08 69.7 12.4 181 150-351 227-429 (489)
195 PRK10787 DNA-binding ATP-depen 97.2 0.0023 5E-08 75.1 12.0 165 151-327 322-506 (784)
196 KOG2982 Uncharacterized conser 97.2 7.7E-05 1.7E-09 73.4 -0.5 63 702-764 197-265 (418)
197 PF02562 PhoH: PhoH-like prote 97.2 0.0013 2.9E-08 63.4 7.8 53 155-209 4-56 (205)
198 KOG0743 AAA+-type ATPase [Post 97.2 0.051 1.1E-06 57.7 20.0 158 173-364 236-417 (457)
199 PF00448 SRP54: SRP54-type pro 97.1 0.0029 6.2E-08 61.3 9.9 88 172-261 1-93 (196)
200 PRK12727 flagellar biosynthesi 97.1 0.027 5.8E-07 61.9 17.3 89 171-261 349-438 (559)
201 TIGR03345 VI_ClpV1 type VI sec 97.0 0.0031 6.6E-08 75.0 11.1 47 151-197 566-621 (852)
202 KOG0739 AAA+-type ATPase [Post 97.0 0.0058 1.3E-07 60.5 10.9 176 152-350 134-334 (439)
203 KOG1909 Ran GTPase-activating 97.0 0.00034 7.3E-09 70.7 2.0 224 531-759 28-309 (382)
204 COG2812 DnaX DNA polymerase II 97.0 0.0031 6.6E-08 69.2 9.4 189 148-352 13-215 (515)
205 PRK04132 replication factor C 97.0 0.013 2.8E-07 68.5 14.9 161 177-360 569-734 (846)
206 PRK07261 topology modulation p 97.0 0.0028 6E-08 60.1 8.0 66 174-262 2-68 (171)
207 TIGR02902 spore_lonB ATP-depen 97.0 0.017 3.8E-07 65.1 15.7 50 148-197 62-111 (531)
208 PRK07993 DNA polymerase III su 97.0 0.026 5.6E-07 59.6 15.9 176 159-355 10-202 (334)
209 TIGR02237 recomb_radB DNA repa 96.9 0.0037 8.1E-08 61.7 9.1 87 171-261 11-107 (209)
210 COG1223 Predicted ATPase (AAA+ 96.9 0.01 2.2E-07 57.7 11.3 177 150-350 120-318 (368)
211 COG0542 clpA ATP-binding subun 96.9 0.0027 5.9E-08 72.5 8.6 158 149-327 168-346 (786)
212 TIGR02640 gas_vesic_GvpN gas v 96.9 0.019 4.2E-07 58.7 14.2 56 158-220 9-64 (262)
213 PRK06964 DNA polymerase III su 96.9 0.038 8.3E-07 58.2 16.5 92 250-357 131-225 (342)
214 PRK05541 adenylylsulfate kinas 96.9 0.003 6.5E-08 60.4 7.5 36 171-208 6-41 (176)
215 PF07693 KAP_NTPase: KAP famil 96.9 0.054 1.2E-06 57.5 17.9 43 157-199 2-47 (325)
216 KOG1969 DNA replication checkp 96.8 0.0038 8.3E-08 69.3 8.6 75 171-263 325-399 (877)
217 TIGR01243 CDC48 AAA family ATP 96.8 0.015 3.3E-07 68.8 14.4 178 151-351 453-657 (733)
218 KOG2035 Replication factor C, 96.8 0.0055 1.2E-07 60.2 8.7 208 152-379 14-261 (351)
219 KOG0733 Nuclear AAA ATPase (VC 96.8 0.033 7.1E-07 60.9 15.3 94 150-263 189-294 (802)
220 PRK09361 radB DNA repair and r 96.8 0.0052 1.1E-07 61.4 9.0 87 171-261 22-117 (225)
221 COG0470 HolB ATPase involved i 96.8 0.0098 2.1E-07 63.2 11.8 142 153-317 3-171 (325)
222 TIGR02639 ClpA ATP-dependent C 96.8 0.0072 1.6E-07 71.3 11.3 102 151-263 454-565 (731)
223 TIGR01243 CDC48 AAA family ATP 96.8 0.012 2.6E-07 69.7 13.2 182 149-352 176-382 (733)
224 KOG1514 Origin recognition com 96.8 0.052 1.1E-06 60.5 16.8 202 150-360 395-624 (767)
225 smart00763 AAA_PrkA PrkA AAA d 96.8 0.0021 4.6E-08 67.1 6.0 47 152-198 52-104 (361)
226 PF13207 AAA_17: AAA domain; P 96.8 0.0012 2.7E-08 58.6 3.6 23 174-196 1-23 (121)
227 PRK08181 transposase; Validate 96.8 0.002 4.3E-08 65.5 5.4 79 165-263 101-179 (269)
228 cd01393 recA_like RecA is a b 96.7 0.0098 2.1E-07 59.5 10.5 92 171-263 18-126 (226)
229 COG1484 DnaC DNA replication p 96.7 0.0089 1.9E-07 60.5 9.9 76 171-263 104-179 (254)
230 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.0074 1.6E-07 60.8 9.5 91 171-262 18-126 (235)
231 PF05659 RPW8: Arabidopsis bro 96.7 0.024 5.2E-07 51.6 11.5 90 28-124 24-113 (147)
232 PF03215 Rad17: Rad17 cell cyc 96.7 0.0097 2.1E-07 66.3 10.8 67 140-210 8-79 (519)
233 PRK12377 putative replication 96.7 0.01 2.2E-07 59.5 10.1 75 171-262 100-174 (248)
234 KOG0735 AAA+-type ATPase [Post 96.7 0.013 2.7E-07 65.0 11.2 160 172-350 431-608 (952)
235 PRK00771 signal recognition pa 96.7 0.08 1.7E-06 57.8 17.4 90 171-263 94-187 (437)
236 PRK09183 transposase/IS protei 96.7 0.0036 7.9E-08 63.6 6.8 28 172-199 102-129 (259)
237 cd00983 recA RecA is a bacter 96.7 0.0078 1.7E-07 62.5 9.2 86 171-263 54-145 (325)
238 PLN00020 ribulose bisphosphate 96.7 0.03 6.6E-07 58.3 13.1 30 170-199 146-175 (413)
239 KOG0731 AAA+-type ATPase conta 96.6 0.032 7E-07 63.5 14.2 182 150-353 310-520 (774)
240 PRK10865 protein disaggregatio 96.6 0.075 1.6E-06 63.7 18.1 105 151-263 568-682 (857)
241 TIGR03499 FlhF flagellar biosy 96.6 0.012 2.7E-07 60.6 10.2 88 171-260 193-281 (282)
242 PRK06526 transposase; Provisio 96.6 0.0025 5.4E-08 64.4 4.9 74 172-263 98-171 (254)
243 TIGR02238 recomb_DMC1 meiotic 96.6 0.011 2.3E-07 61.8 9.4 90 171-261 95-201 (313)
244 PRK11889 flhF flagellar biosyn 96.6 0.021 4.6E-07 60.3 11.4 90 171-262 240-331 (436)
245 TIGR02012 tigrfam_recA protein 96.5 0.012 2.6E-07 61.2 9.4 86 171-263 54-145 (321)
246 KOG4341 F-box protein containi 96.5 7E-05 1.5E-09 77.2 -6.7 83 531-613 162-252 (483)
247 PRK06696 uridine kinase; Valid 96.5 0.0038 8.3E-08 62.2 5.7 44 155-198 2-48 (223)
248 cd01394 radB RadB. The archaea 96.5 0.011 2.3E-07 58.9 8.8 43 171-215 18-60 (218)
249 PRK07952 DNA replication prote 96.5 0.016 3.5E-07 58.0 10.0 89 159-263 84-174 (244)
250 KOG0728 26S proteasome regulat 96.5 0.042 9.1E-07 53.1 12.0 185 153-361 148-367 (404)
251 PF08423 Rad51: Rad51; InterP 96.5 0.011 2.5E-07 59.9 8.9 89 172-261 38-143 (256)
252 COG1875 NYN ribonuclease and A 96.4 0.0092 2E-07 61.1 7.7 53 152-204 225-278 (436)
253 PRK09354 recA recombinase A; P 96.4 0.015 3.3E-07 60.8 9.6 86 171-263 59-150 (349)
254 KOG2739 Leucine-rich acidic nu 96.4 0.00094 2E-08 65.2 0.6 79 557-636 42-126 (260)
255 PRK04296 thymidine kinase; Pro 96.4 0.0048 1E-07 59.7 5.4 110 173-297 3-117 (190)
256 KOG4579 Leucine-rich repeat (L 96.4 0.00049 1.1E-08 60.1 -1.4 86 556-642 51-138 (177)
257 KOG0734 AAA+-type ATPase conta 96.4 0.0099 2.1E-07 63.6 7.7 50 150-199 303-364 (752)
258 KOG0730 AAA+-type ATPase [Post 96.4 0.039 8.4E-07 61.1 12.5 139 170-329 466-617 (693)
259 TIGR01425 SRP54_euk signal rec 96.3 0.21 4.5E-06 54.2 17.7 57 171-229 99-156 (429)
260 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.031 6.7E-07 56.2 10.9 49 171-223 20-68 (237)
261 PRK10733 hflB ATP-dependent me 96.3 0.046 9.9E-07 63.4 13.5 155 173-349 186-355 (644)
262 COG2884 FtsE Predicted ATPase 96.3 0.015 3.3E-07 54.1 7.6 121 170-300 26-201 (223)
263 TIGR03346 chaperone_ClpB ATP-d 96.3 0.0091 2E-07 71.6 8.1 105 151-263 565-679 (852)
264 KOG2228 Origin recognition com 96.3 0.19 4.1E-06 51.3 15.7 170 150-328 23-220 (408)
265 PRK14722 flhF flagellar biosyn 96.3 0.021 4.6E-07 60.6 9.8 91 171-263 136-227 (374)
266 PRK09270 nucleoside triphospha 96.3 0.032 7E-07 55.8 10.7 30 170-199 31-60 (229)
267 PLN03187 meiotic recombination 96.3 0.027 5.8E-07 59.3 10.4 90 171-261 125-231 (344)
268 COG0542 clpA ATP-binding subun 96.3 0.079 1.7E-06 61.0 14.7 104 152-263 492-605 (786)
269 COG0464 SpoVK ATPases of the A 96.3 0.03 6.6E-07 63.2 11.6 139 171-329 275-425 (494)
270 cd03115 SRP The signal recogni 96.3 0.022 4.9E-07 54.2 9.0 87 174-262 2-93 (173)
271 PRK08699 DNA polymerase III su 96.2 0.07 1.5E-06 56.1 13.4 87 251-353 113-202 (325)
272 PRK10867 signal recognition pa 96.2 0.025 5.3E-07 61.5 10.2 90 171-261 99-193 (433)
273 CHL00095 clpC Clp protease ATP 96.2 0.012 2.5E-07 70.4 8.4 105 151-263 509-623 (821)
274 COG1102 Cmk Cytidylate kinase 96.2 0.015 3.1E-07 52.7 6.6 45 174-231 2-46 (179)
275 cd01120 RecA-like_NTPases RecA 96.2 0.032 6.9E-07 52.3 9.6 40 174-215 1-40 (165)
276 PLN03186 DNA repair protein RA 96.2 0.022 4.7E-07 60.1 9.0 59 171-230 122-184 (342)
277 cd01133 F1-ATPase_beta F1 ATP 96.2 0.039 8.5E-07 55.8 10.4 90 171-262 68-174 (274)
278 TIGR00959 ffh signal recogniti 96.1 0.031 6.7E-07 60.7 10.3 90 171-261 98-192 (428)
279 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.024 5.2E-07 52.4 8.0 121 173-297 3-139 (159)
280 KOG0733 Nuclear AAA ATPase (VC 96.1 0.087 1.9E-06 57.7 13.2 131 172-328 545-693 (802)
281 PRK06547 hypothetical protein; 96.1 0.0087 1.9E-07 56.6 5.2 35 162-196 5-39 (172)
282 TIGR02239 recomb_RAD51 DNA rep 96.1 0.023 5.1E-07 59.4 8.8 58 171-229 95-156 (316)
283 PRK15455 PrkA family serine pr 96.1 0.0088 1.9E-07 65.9 5.6 48 151-198 76-129 (644)
284 PTZ00035 Rad51 protein; Provis 96.1 0.037 8.1E-07 58.5 10.3 91 171-262 117-224 (337)
285 PRK08939 primosomal protein Dn 96.1 0.032 7E-07 58.1 9.7 95 155-267 135-235 (306)
286 KOG2123 Uncharacterized conser 96.1 0.0003 6.6E-09 68.7 -4.9 78 532-613 18-98 (388)
287 PRK04301 radA DNA repair and r 96.0 0.038 8.2E-07 58.3 10.3 58 171-229 101-162 (317)
288 COG1618 Predicted nucleotide k 96.0 0.01 2.2E-07 53.7 4.6 30 173-203 6-35 (179)
289 PRK12724 flagellar biosynthesi 96.0 0.028 6E-07 60.2 8.7 84 172-260 223-308 (432)
290 PRK00889 adenylylsulfate kinas 95.9 0.029 6.2E-07 53.6 8.1 29 171-199 3-31 (175)
291 cd02027 APSK Adenosine 5'-phos 95.9 0.03 6.4E-07 51.8 7.7 25 174-198 1-25 (149)
292 PRK12726 flagellar biosynthesi 95.9 0.063 1.4E-06 56.6 10.7 90 171-262 205-296 (407)
293 KOG2739 Leucine-rich acidic nu 95.9 0.0059 1.3E-07 59.8 2.9 113 577-696 39-157 (260)
294 TIGR01069 mutS2 MutS2 family p 95.9 0.0086 1.9E-07 70.3 4.9 194 171-378 321-522 (771)
295 PRK12723 flagellar biosynthesi 95.9 0.045 9.8E-07 58.7 9.9 91 171-263 173-266 (388)
296 TIGR02236 recomb_radA DNA repa 95.9 0.052 1.1E-06 57.1 10.4 57 171-228 94-154 (310)
297 PRK11034 clpA ATP-dependent Cl 95.8 0.016 3.5E-07 67.7 6.9 101 152-263 459-569 (758)
298 PRK06067 flagellar accessory p 95.8 0.05 1.1E-06 54.7 9.7 86 171-261 24-130 (234)
299 KOG0736 Peroxisome assembly fa 95.8 0.042 9.1E-07 61.7 9.6 94 150-263 671-776 (953)
300 PRK07667 uridine kinase; Provi 95.8 0.014 3.1E-07 56.6 5.5 38 161-198 4-43 (193)
301 PF06309 Torsin: Torsin; Inte 95.8 0.1 2.2E-06 45.8 10.0 45 152-196 26-77 (127)
302 PF01583 APS_kinase: Adenylyls 95.8 0.0079 1.7E-07 55.3 3.4 36 172-209 2-37 (156)
303 PRK15429 formate hydrogenlyase 95.8 0.16 3.5E-06 59.8 15.2 61 150-212 375-437 (686)
304 TIGR00554 panK_bact pantothena 95.8 0.049 1.1E-06 56.0 9.5 28 170-197 60-87 (290)
305 KOG0744 AAA+-type ATPase [Post 95.8 0.022 4.8E-07 57.3 6.6 82 172-263 177-262 (423)
306 smart00534 MUTSac ATPase domai 95.8 0.0041 8.9E-08 59.9 1.5 118 174-299 1-125 (185)
307 cd01131 PilT Pilus retraction 95.8 0.018 4E-07 56.0 6.1 109 173-298 2-111 (198)
308 PF00158 Sigma54_activat: Sigm 95.8 0.058 1.3E-06 50.8 9.2 43 154-196 2-46 (168)
309 COG0541 Ffh Signal recognition 95.8 0.98 2.1E-05 48.2 18.8 61 171-233 99-160 (451)
310 PRK06921 hypothetical protein; 95.8 0.056 1.2E-06 55.2 9.8 39 171-210 116-154 (266)
311 COG4088 Predicted nucleotide k 95.8 0.029 6.2E-07 52.9 6.8 27 173-199 2-28 (261)
312 cd02025 PanK Pantothenate kina 95.7 0.052 1.1E-06 53.8 9.2 24 174-197 1-24 (220)
313 PRK13531 regulatory ATPase Rav 95.7 0.018 3.8E-07 62.7 6.2 50 152-203 21-70 (498)
314 PRK05703 flhF flagellar biosyn 95.7 0.041 8.9E-07 60.1 9.2 86 172-260 221-308 (424)
315 PF00154 RecA: recA bacterial 95.7 0.045 9.8E-07 56.7 9.0 86 171-263 52-143 (322)
316 PRK04328 hypothetical protein; 95.7 0.056 1.2E-06 54.7 9.5 41 171-213 22-62 (249)
317 PF07728 AAA_5: AAA domain (dy 95.7 0.021 4.6E-07 52.1 5.9 43 175-222 2-44 (139)
318 PF01695 IstB_IS21: IstB-like 95.7 0.041 8.8E-07 52.5 7.9 75 171-263 46-120 (178)
319 COG0468 RecA RecA/RadA recombi 95.7 0.067 1.5E-06 54.3 9.9 89 171-262 59-152 (279)
320 PRK14721 flhF flagellar biosyn 95.7 0.088 1.9E-06 56.9 11.2 88 171-260 190-278 (420)
321 PF00485 PRK: Phosphoribulokin 95.7 0.01 2.3E-07 57.6 3.9 26 174-199 1-26 (194)
322 COG2607 Predicted ATPase (AAA+ 95.6 0.11 2.4E-06 50.3 10.4 97 150-273 59-164 (287)
323 PF13238 AAA_18: AAA domain; P 95.6 0.0096 2.1E-07 53.4 3.2 22 175-196 1-22 (129)
324 TIGR00064 ftsY signal recognit 95.6 0.074 1.6E-06 54.5 9.9 89 171-262 71-165 (272)
325 PF03308 ArgK: ArgK protein; 95.6 0.03 6.6E-07 55.3 6.7 61 159-219 14-76 (266)
326 cd03281 ABC_MSH5_euk MutS5 hom 95.6 0.0085 1.8E-07 59.0 2.8 24 172-195 29-52 (213)
327 cd03214 ABC_Iron-Siderophores_ 95.5 0.06 1.3E-06 51.6 8.6 120 171-298 24-160 (180)
328 PTZ00301 uridine kinase; Provi 95.5 0.013 2.8E-07 57.3 3.9 26 172-197 3-28 (210)
329 PF08433 KTI12: Chromatin asso 95.5 0.042 9E-07 56.0 7.7 26 173-198 2-27 (270)
330 PRK05480 uridine/cytidine kina 95.5 0.013 2.9E-07 57.7 4.0 27 170-196 4-30 (209)
331 cd03247 ABCC_cytochrome_bd The 95.5 0.034 7.3E-07 53.2 6.7 116 171-299 27-160 (178)
332 PRK06995 flhF flagellar biosyn 95.5 0.081 1.7E-06 58.2 10.3 88 172-261 256-344 (484)
333 COG1703 ArgK Putative periplas 95.5 0.029 6.3E-07 56.3 6.2 61 161-221 38-100 (323)
334 cd02019 NK Nucleoside/nucleoti 95.5 0.013 2.7E-07 46.0 3.0 23 174-196 1-23 (69)
335 COG0563 Adk Adenylate kinase a 95.5 0.027 5.8E-07 53.5 5.8 24 174-197 2-25 (178)
336 KOG2123 Uncharacterized conser 95.4 0.00085 1.8E-08 65.7 -4.5 100 557-657 18-123 (388)
337 PRK08233 hypothetical protein; 95.4 0.013 2.9E-07 56.2 3.6 26 172-197 3-28 (182)
338 TIGR03878 thermo_KaiC_2 KaiC d 95.4 0.081 1.8E-06 53.9 9.5 40 171-212 35-74 (259)
339 PF13671 AAA_33: AAA domain; P 95.4 0.014 3E-07 53.5 3.5 24 174-197 1-24 (143)
340 cd03283 ABC_MutS-like MutS-lik 95.4 0.013 2.8E-07 57.1 3.4 24 173-196 26-49 (199)
341 PRK14974 cell division protein 95.4 0.15 3.3E-06 53.6 11.5 90 171-263 139-234 (336)
342 TIGR00235 udk uridine kinase. 95.3 0.015 3.3E-07 57.1 3.8 28 170-197 4-31 (207)
343 PRK08533 flagellar accessory p 95.3 0.12 2.7E-06 51.5 10.3 49 171-223 23-71 (230)
344 PRK14723 flhF flagellar biosyn 95.3 0.13 2.9E-06 59.4 11.7 88 172-261 185-273 (767)
345 PRK10463 hydrogenase nickel in 95.3 0.18 3.9E-06 51.5 11.4 94 163-262 95-195 (290)
346 KOG0729 26S proteasome regulat 95.3 0.064 1.4E-06 52.4 7.7 48 150-197 176-236 (435)
347 TIGR00708 cobA cob(I)alamin ad 95.3 0.072 1.6E-06 49.9 7.9 124 172-297 5-141 (173)
348 PF06745 KaiC: KaiC; InterPro 95.3 0.047 1E-06 54.6 7.3 89 171-263 18-127 (226)
349 PRK07132 DNA polymerase III su 95.3 0.66 1.4E-05 48.1 15.7 159 161-349 6-177 (299)
350 cd03223 ABCD_peroxisomal_ALDP 95.3 0.063 1.4E-06 50.7 7.7 113 171-298 26-150 (166)
351 TIGR03881 KaiC_arch_4 KaiC dom 95.3 0.15 3.4E-06 50.9 11.0 41 171-213 19-59 (229)
352 PRK00409 recombination and DNA 95.3 0.062 1.3E-06 63.5 9.2 185 170-378 325-527 (782)
353 COG0572 Udk Uridine kinase [Nu 95.3 0.017 3.7E-07 55.7 3.7 29 171-199 7-35 (218)
354 PF13245 AAA_19: Part of AAA d 95.3 0.052 1.1E-06 43.4 5.9 26 171-196 9-35 (76)
355 PF13481 AAA_25: AAA domain; P 95.2 0.14 3.1E-06 49.5 10.3 42 172-213 32-81 (193)
356 PF00006 ATP-synt_ab: ATP synt 95.2 0.063 1.4E-06 52.6 7.6 84 172-260 15-114 (215)
357 PF12775 AAA_7: P-loop contain 95.2 0.012 2.6E-07 60.2 2.7 91 160-263 22-112 (272)
358 PF03205 MobB: Molybdopterin g 95.2 0.035 7.6E-07 50.5 5.3 39 173-212 1-39 (140)
359 PRK06762 hypothetical protein; 95.2 0.019 4.1E-07 54.3 3.7 25 172-196 2-26 (166)
360 TIGR01360 aden_kin_iso1 adenyl 95.2 0.019 4.1E-07 55.5 3.8 26 171-196 2-27 (188)
361 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.2 0.07 1.5E-06 49.0 7.3 103 171-299 25-130 (144)
362 COG1428 Deoxynucleoside kinase 95.2 0.037 8E-07 52.8 5.5 47 172-223 4-50 (216)
363 PRK05439 pantothenate kinase; 95.1 0.15 3.2E-06 52.8 10.4 43 170-212 84-126 (311)
364 KOG0735 AAA+-type ATPase [Post 95.1 0.4 8.8E-06 53.7 13.8 70 173-263 702-772 (952)
365 PRK03846 adenylylsulfate kinas 95.1 0.071 1.5E-06 52.0 7.5 30 169-198 21-50 (198)
366 COG3640 CooC CO dehydrogenase 95.1 0.047 1E-06 52.8 5.9 43 174-217 2-44 (255)
367 PF00910 RNA_helicase: RNA hel 95.1 0.022 4.7E-07 49.3 3.5 25 175-199 1-25 (107)
368 COG0194 Gmk Guanylate kinase [ 95.1 0.033 7.1E-07 52.0 4.7 25 172-196 4-28 (191)
369 PRK09519 recA DNA recombinatio 95.0 0.092 2E-06 60.9 9.3 86 171-263 59-150 (790)
370 cd01135 V_A-ATPase_B V/A-type 95.0 0.2 4.3E-06 50.6 10.6 92 171-262 68-177 (276)
371 TIGR02974 phageshock_pspF psp 95.0 0.097 2.1E-06 55.3 8.8 44 154-197 2-47 (329)
372 COG0465 HflB ATP-dependent Zn 95.0 0.17 3.7E-06 56.6 11.0 178 149-353 148-357 (596)
373 PRK03839 putative kinase; Prov 95.0 0.022 4.7E-07 54.7 3.6 24 174-197 2-25 (180)
374 COG1066 Sms Predicted ATP-depe 95.0 0.091 2E-06 55.1 8.2 86 172-263 93-180 (456)
375 PRK05973 replicative DNA helic 94.9 0.22 4.8E-06 49.5 10.5 49 171-223 63-111 (237)
376 PTZ00088 adenylate kinase 1; P 94.9 0.03 6.5E-07 55.6 4.3 24 174-197 8-31 (229)
377 PRK12597 F0F1 ATP synthase sub 94.9 0.17 3.6E-06 55.4 10.3 90 171-262 142-248 (461)
378 TIGR01817 nifA Nif-specific re 94.9 0.092 2E-06 59.8 8.9 49 149-197 194-244 (534)
379 cd03222 ABC_RNaseL_inhibitor T 94.9 0.071 1.5E-06 50.7 6.7 73 170-263 23-101 (177)
380 KOG1532 GTPase XAB1, interacts 94.8 0.034 7.4E-07 54.6 4.4 30 171-200 18-47 (366)
381 KOG0652 26S proteasome regulat 94.8 0.77 1.7E-05 45.0 13.4 50 148-197 168-230 (424)
382 COG5238 RNA1 Ran GTPase-activa 94.8 0.039 8.4E-07 54.2 4.7 154 556-715 28-225 (388)
383 PRK04040 adenylate kinase; Pro 94.8 0.026 5.6E-07 54.3 3.6 26 172-197 2-27 (188)
384 PRK10751 molybdopterin-guanine 94.8 0.034 7.4E-07 52.2 4.3 29 171-199 5-33 (173)
385 COG4608 AppF ABC-type oligopep 94.8 0.12 2.6E-06 51.5 8.3 122 171-300 38-174 (268)
386 PF00560 LRR_1: Leucine Rich R 94.8 0.011 2.5E-07 34.4 0.7 21 604-624 1-21 (22)
387 cd03228 ABCC_MRP_Like The MRP 94.8 0.061 1.3E-06 51.1 6.1 27 171-197 27-53 (171)
388 PRK05022 anaerobic nitric oxid 94.8 0.092 2E-06 59.3 8.5 62 150-213 186-249 (509)
389 TIGR00150 HI0065_YjeE ATPase, 94.8 0.058 1.3E-06 48.2 5.4 40 159-198 7-48 (133)
390 PRK09280 F0F1 ATP synthase sub 94.8 0.23 5.1E-06 54.1 11.0 90 171-262 143-249 (463)
391 cd03246 ABCC_Protease_Secretio 94.8 0.067 1.4E-06 50.9 6.3 116 171-299 27-159 (173)
392 PRK00131 aroK shikimate kinase 94.7 0.03 6.6E-07 53.2 3.9 27 171-197 3-29 (175)
393 cd03287 ABC_MSH3_euk MutS3 hom 94.7 0.025 5.4E-07 55.9 3.3 121 171-299 30-157 (222)
394 TIGR00390 hslU ATP-dependent p 94.7 0.089 1.9E-06 56.2 7.5 48 151-198 12-73 (441)
395 COG1419 FlhF Flagellar GTP-bin 94.7 0.36 7.7E-06 51.2 11.7 101 158-260 185-290 (407)
396 PRK00625 shikimate kinase; Pro 94.7 0.028 6.1E-07 53.2 3.4 24 174-197 2-25 (173)
397 PRK11608 pspF phage shock prot 94.7 0.059 1.3E-06 57.0 6.1 47 150-196 5-53 (326)
398 PTZ00494 tuzin-like protein; P 94.6 1.6 3.5E-05 46.7 16.2 167 148-327 368-544 (664)
399 TIGR03575 selen_PSTK_euk L-ser 94.6 0.14 3E-06 53.8 8.7 36 175-211 2-37 (340)
400 COG0467 RAD55 RecA-superfamily 94.6 0.051 1.1E-06 55.6 5.5 54 170-228 21-74 (260)
401 TIGR03574 selen_PSTK L-seryl-t 94.6 0.1 2.2E-06 53.0 7.5 25 174-198 1-25 (249)
402 TIGR02030 BchI-ChlI magnesium 94.6 0.054 1.2E-06 57.0 5.6 47 150-196 3-49 (337)
403 PRK13765 ATP-dependent proteas 94.6 0.072 1.6E-06 60.9 6.9 78 149-230 29-106 (637)
404 TIGR02858 spore_III_AA stage I 94.6 0.058 1.3E-06 54.9 5.6 125 160-298 98-231 (270)
405 TIGR00041 DTMP_kinase thymidyl 94.5 0.17 3.8E-06 49.1 8.8 27 173-199 4-30 (195)
406 TIGR01359 UMP_CMP_kin_fam UMP- 94.5 0.027 5.8E-07 54.2 3.0 23 174-196 1-23 (183)
407 PRK08972 fliI flagellum-specif 94.5 0.15 3.2E-06 55.1 8.7 87 171-262 161-263 (444)
408 CHL00081 chlI Mg-protoporyphyr 94.5 0.046 1E-06 57.6 4.8 50 149-198 15-64 (350)
409 cd02023 UMPK Uridine monophosp 94.5 0.026 5.7E-07 55.1 2.9 23 174-196 1-23 (198)
410 TIGR02655 circ_KaiC circadian 94.5 0.15 3.3E-06 57.0 9.3 85 171-260 262-362 (484)
411 cd02024 NRK1 Nicotinamide ribo 94.5 0.029 6.2E-07 53.7 3.0 23 174-196 1-23 (187)
412 cd01121 Sms Sms (bacterial rad 94.5 0.19 4E-06 53.9 9.4 82 172-262 82-169 (372)
413 PRK05342 clpX ATP-dependent pr 94.4 0.1 2.3E-06 56.6 7.5 46 151-196 71-132 (412)
414 PF02374 ArsA_ATPase: Anion-tr 94.4 0.062 1.3E-06 56.1 5.6 47 173-221 2-48 (305)
415 cd02028 UMPK_like Uridine mono 94.4 0.046 1E-06 52.2 4.3 25 174-198 1-25 (179)
416 cd03243 ABC_MutS_homologs The 94.4 0.021 4.6E-07 55.9 2.1 23 173-195 30-52 (202)
417 TIGR02322 phosphon_PhnN phosph 94.4 0.035 7.6E-07 53.2 3.5 25 173-197 2-26 (179)
418 PRK05917 DNA polymerase III su 94.4 0.82 1.8E-05 46.9 13.3 39 159-197 5-44 (290)
419 cd00544 CobU Adenosylcobinamid 94.3 0.15 3.2E-06 48.1 7.4 79 175-260 2-82 (169)
420 PF05970 PIF1: PIF1-like helic 94.3 0.1 2.2E-06 56.2 7.2 41 159-199 9-49 (364)
421 cd03285 ABC_MSH2_euk MutS2 hom 94.3 0.14 3E-06 50.9 7.6 176 171-362 29-218 (222)
422 cd00227 CPT Chloramphenicol (C 94.3 0.041 8.9E-07 52.4 3.8 25 172-196 2-26 (175)
423 COG1224 TIP49 DNA helicase TIP 94.3 0.086 1.9E-06 54.0 6.0 54 150-203 38-96 (450)
424 PRK08927 fliI flagellum-specif 94.3 0.19 4.1E-06 54.5 9.0 88 171-262 157-259 (442)
425 PRK12678 transcription termina 94.3 0.17 3.6E-06 55.9 8.6 91 171-262 415-514 (672)
426 PF00625 Guanylate_kin: Guanyl 94.3 0.058 1.3E-06 51.9 4.7 36 172-209 2-37 (183)
427 COG0003 ArsA Predicted ATPase 94.3 0.09 1.9E-06 54.8 6.3 49 172-222 2-50 (322)
428 KOG0737 AAA+-type ATPase [Post 94.3 0.48 1E-05 49.2 11.3 29 171-199 126-154 (386)
429 cd03282 ABC_MSH4_euk MutS4 hom 94.3 0.14 3.1E-06 49.9 7.4 122 171-299 28-154 (204)
430 PF13086 AAA_11: AAA domain; P 94.3 0.083 1.8E-06 52.9 6.1 23 174-196 19-41 (236)
431 PF13479 AAA_24: AAA domain 94.2 0.14 3E-06 50.5 7.4 31 173-213 4-34 (213)
432 PF07726 AAA_3: ATPase family 94.2 0.05 1.1E-06 47.8 3.6 25 175-199 2-26 (131)
433 PF00560 LRR_1: Leucine Rich R 94.2 0.017 3.7E-07 33.7 0.5 20 560-579 2-21 (22)
434 PRK06217 hypothetical protein; 94.2 0.039 8.4E-07 53.1 3.3 24 174-197 3-26 (183)
435 KOG3347 Predicted nucleotide k 94.2 0.095 2.1E-06 46.7 5.2 35 172-213 7-41 (176)
436 cd02020 CMPK Cytidine monophos 94.2 0.039 8.4E-07 50.8 3.1 24 174-197 1-24 (147)
437 TIGR01039 atpD ATP synthase, F 94.1 0.41 8.9E-06 52.1 11.1 91 171-263 142-249 (461)
438 TIGR03305 alt_F1F0_F1_bet alte 94.1 0.32 7E-06 52.9 10.4 92 171-263 137-244 (449)
439 PRK06731 flhF flagellar biosyn 94.1 0.37 8E-06 49.1 10.3 90 171-263 74-166 (270)
440 cd01122 GP4d_helicase GP4d_hel 94.1 0.42 9.1E-06 49.2 11.0 53 171-226 29-81 (271)
441 PRK06002 fliI flagellum-specif 94.1 0.15 3.2E-06 55.4 7.6 89 171-262 164-265 (450)
442 COG2274 SunT ABC-type bacterio 94.1 0.12 2.6E-06 60.0 7.5 27 170-196 497-523 (709)
443 TIGR00455 apsK adenylylsulfate 94.1 0.16 3.4E-06 48.9 7.2 29 170-198 16-44 (184)
444 KOG2170 ATPase of the AAA+ sup 94.0 0.21 4.6E-06 50.1 8.0 96 152-263 83-190 (344)
445 PF03193 DUF258: Protein of un 94.0 0.081 1.8E-06 48.9 4.8 35 159-196 25-59 (161)
446 PRK14530 adenylate kinase; Pro 94.0 0.048 1E-06 54.0 3.7 24 173-196 4-27 (215)
447 cd02021 GntK Gluconate kinase 94.0 0.04 8.8E-07 51.0 2.9 23 174-196 1-23 (150)
448 COG0529 CysC Adenylylsulfate k 94.0 0.085 1.8E-06 48.7 4.7 32 168-199 19-50 (197)
449 TIGR00073 hypB hydrogenase acc 94.0 0.059 1.3E-06 52.9 4.2 31 167-197 17-47 (207)
450 COG2019 AdkA Archaeal adenylat 94.0 0.056 1.2E-06 49.2 3.5 46 172-229 4-49 (189)
451 PRK06851 hypothetical protein; 94.0 0.67 1.5E-05 49.2 12.1 44 169-213 211-254 (367)
452 PRK00300 gmk guanylate kinase; 93.9 0.053 1.1E-06 53.2 3.8 26 171-196 4-29 (205)
453 COG1763 MobB Molybdopterin-gua 93.9 0.059 1.3E-06 49.8 3.8 29 172-200 2-30 (161)
454 PRK05986 cob(I)alamin adenolsy 93.9 0.18 3.8E-06 48.0 7.0 123 171-297 21-159 (191)
455 PRK13949 shikimate kinase; Pro 93.9 0.052 1.1E-06 51.3 3.5 25 173-197 2-26 (169)
456 TIGR00764 lon_rel lon-related 93.9 0.13 2.8E-06 59.1 7.2 76 150-229 17-92 (608)
457 TIGR03263 guanyl_kin guanylate 93.9 0.044 9.6E-07 52.5 3.0 24 173-196 2-25 (180)
458 PRK05800 cobU adenosylcobinami 93.9 0.17 3.7E-06 47.8 6.8 81 173-260 2-85 (170)
459 PRK13947 shikimate kinase; Pro 93.8 0.051 1.1E-06 51.6 3.3 24 174-197 3-26 (171)
460 COG0714 MoxR-like ATPases [Gen 93.8 0.15 3.3E-06 54.1 7.3 64 153-223 26-89 (329)
461 TIGR01650 PD_CobS cobaltochela 93.8 0.24 5.2E-06 51.5 8.4 62 152-220 46-107 (327)
462 PRK13407 bchI magnesium chelat 93.8 0.081 1.8E-06 55.6 5.0 49 148-196 5-53 (334)
463 cd01136 ATPase_flagellum-secre 93.8 0.37 8E-06 50.4 9.7 89 170-262 67-170 (326)
464 PF13604 AAA_30: AAA domain; P 93.8 0.14 3.1E-06 49.6 6.4 39 161-199 7-45 (196)
465 PRK10416 signal recognition pa 93.8 0.36 7.8E-06 50.6 9.8 29 171-199 113-141 (318)
466 TIGR00176 mobB molybdopterin-g 93.8 0.059 1.3E-06 50.0 3.5 35 174-209 1-35 (155)
467 PRK14527 adenylate kinase; Pro 93.8 0.061 1.3E-06 52.1 3.8 27 171-197 5-31 (191)
468 COG1936 Predicted nucleotide k 93.8 0.05 1.1E-06 50.1 2.9 20 174-193 2-21 (180)
469 PLN02924 thymidylate kinase 93.8 0.29 6.3E-06 48.4 8.6 53 172-225 16-68 (220)
470 TIGR01351 adk adenylate kinase 93.8 0.21 4.6E-06 49.1 7.7 22 175-196 2-23 (210)
471 PRK15453 phosphoribulokinase; 93.7 0.43 9.3E-06 48.4 9.7 28 170-197 3-30 (290)
472 cd01672 TMPK Thymidine monopho 93.7 0.17 3.7E-06 49.2 7.0 26 173-198 1-26 (200)
473 COG5238 RNA1 Ran GTPase-activa 93.7 0.063 1.4E-06 52.8 3.7 182 531-715 28-253 (388)
474 PF08298 AAA_PrkA: PrkA AAA do 93.7 0.12 2.6E-06 53.7 6.0 79 151-234 61-152 (358)
475 PF03266 NTPase_1: NTPase; In 93.7 0.061 1.3E-06 50.6 3.6 24 175-198 2-25 (168)
476 PRK14737 gmk guanylate kinase; 93.7 0.057 1.2E-06 51.9 3.4 26 171-196 3-28 (186)
477 PTZ00185 ATPase alpha subunit; 93.7 0.38 8.2E-06 52.6 9.7 93 171-263 188-301 (574)
478 cd02117 NifH_like This family 93.7 0.07 1.5E-06 52.7 4.1 27 173-199 1-27 (212)
479 cd02029 PRK_like Phosphoribulo 93.7 0.23 4.9E-06 49.9 7.5 26 174-199 1-26 (277)
480 TIGR01287 nifH nitrogenase iro 93.6 0.065 1.4E-06 55.3 4.0 39 173-213 1-39 (275)
481 PF08477 Miro: Miro-like prote 93.6 0.061 1.3E-06 47.3 3.2 23 175-197 2-24 (119)
482 cd00820 PEPCK_HprK Phosphoenol 93.6 0.066 1.4E-06 45.7 3.2 22 172-193 15-36 (107)
483 cd00464 SK Shikimate kinase (S 93.6 0.062 1.3E-06 49.9 3.4 22 175-196 2-23 (154)
484 PRK05201 hslU ATP-dependent pr 93.6 0.18 3.9E-06 54.0 7.0 47 151-197 15-75 (443)
485 cd00071 GMPK Guanosine monopho 93.6 0.052 1.1E-06 49.3 2.7 23 174-196 1-23 (137)
486 PRK10078 ribose 1,5-bisphospho 93.6 0.056 1.2E-06 52.1 3.1 24 173-196 3-26 (186)
487 CHL00206 ycf2 Ycf2; Provisiona 93.5 0.51 1.1E-05 59.2 11.5 28 171-198 1629-1656(2281)
488 PRK12339 2-phosphoglycerate ki 93.5 0.071 1.5E-06 51.6 3.7 25 172-196 3-27 (197)
489 TIGR01420 pilT_fam pilus retra 93.5 0.15 3.3E-06 54.3 6.5 92 171-268 121-212 (343)
490 COG4240 Predicted kinase [Gene 93.5 0.63 1.4E-05 44.8 9.7 83 169-252 47-134 (300)
491 cd01124 KaiC KaiC is a circadi 93.5 0.1 2.2E-06 50.3 4.7 44 175-222 2-45 (187)
492 PRK05057 aroK shikimate kinase 93.5 0.079 1.7E-06 50.3 3.9 25 172-196 4-28 (172)
493 PRK09435 membrane ATPase/prote 93.4 0.21 4.5E-06 52.4 7.2 39 161-199 43-83 (332)
494 TIGR01313 therm_gnt_kin carboh 93.4 0.055 1.2E-06 50.9 2.7 22 175-196 1-22 (163)
495 PRK13975 thymidylate kinase; P 93.4 0.072 1.6E-06 51.9 3.6 26 173-198 3-28 (196)
496 PRK11823 DNA repair protein Ra 93.4 0.42 9E-06 52.8 9.9 82 172-262 80-167 (446)
497 COG1126 GlnQ ABC-type polar am 93.4 0.072 1.6E-06 51.0 3.4 37 170-209 26-62 (240)
498 PF03029 ATP_bind_1: Conserved 93.4 0.067 1.4E-06 53.6 3.4 33 177-211 1-33 (238)
499 cd03116 MobB Molybdenum is an 93.4 0.11 2.4E-06 48.3 4.7 27 173-199 2-28 (159)
500 COG1124 DppF ABC-type dipeptid 93.4 0.073 1.6E-06 51.9 3.4 27 170-196 31-57 (252)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-85 Score=754.65 Aligned_cols=617 Identities=28% Similarity=0.448 Sum_probs=501.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhc-----------------cC
Q 037947 32 YVEELSQVLTRLKYEKEDVRSAVDYAMRKGEEVYEDVKCWLSHVDRFTENVEAILADEGEA-----------------KK 94 (780)
Q Consensus 32 ~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~~~~~~~d~ed~ld~~~~~-----------------~~ 94 (780)
.+.+.++.+..|++.+..++.++++++.++.. ...+..|...+++++|++||.++.+.-. +.
T Consensus 22 ~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~ 100 (889)
T KOG4658|consen 22 CLDGKDNYILELKENLKALQSALEDLDAKRDD-LERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVERQR 100 (889)
T ss_pred HHhchHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHHHHH
Confidence 35567778999999999999999999988765 7889999999999999999998754210 01
Q ss_pred cccCCCC-CchhhhhHhhHHHHHHHHHHHHHHhcCCCCccccCCCC-CcccccccCCccccCCchHHHHHHHHHHccCCc
Q 037947 95 PCFLGLC-PNLFKRYNLSKQAGKAAREGSDLLAKGNFNTTSYTPAP-EWTETLHLRGYEQFESRMPTFQDIMEALKDDNI 172 (780)
Q Consensus 95 ~~~~~~~-~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gr~~~~~~l~~~L~~~~~ 172 (780)
-|+.+.+ .+...-+.+++++.++...++.+..++.|..+...+.+ ......+...... +|.+..++++.+.|.+++.
T Consensus 101 ~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~~ 179 (889)
T KOG4658|consen 101 LCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDDV 179 (889)
T ss_pred HhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCCC
Confidence 1111111 23344455566666666666666555555554432111 1122222222233 8999999999999998888
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHh-ccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCC--CHHHHHHHHHHHhc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVM-EDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHE--DVSERAHLLRQRLK 249 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~~~L~ 249 (780)
.+++|+||||+||||||+.++|+.. ++.+|+.++||+||+.++..+++.+|++.++....... ..++.+..|.+.|+
T Consensus 180 ~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~ 259 (889)
T KOG4658|consen 180 GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLE 259 (889)
T ss_pred CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhc
Confidence 9999999999999999999999998 99999999999999999999999999999887443332 24688899999999
Q ss_pred cCcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCC
Q 037947 250 ASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGV 329 (780)
Q Consensus 250 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~ 329 (780)
+|||+|||||||+..+|+.++.++ +....||+|++|||+..|+...+++...++++.|+.+|||+||.+.++.
T Consensus 260 ~krfllvLDDIW~~~dw~~I~~~~-------p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~ 332 (889)
T KOG4658|consen 260 GKRFLLVLDDIWEEVDWDKIGVPF-------PSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGP 332 (889)
T ss_pred cCceEEEEecccccccHHhcCCCC-------CCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcc
Confidence 999999999999999999999999 8888999999999999998766888899999999999999999999984
Q ss_pred C--CCCCChhHHHHHHHHHhCCChHHHHHHHHHHhCC-ChhHHHHHHHHHhcCCCCCCCCchhhhhccccccccccCchh
Q 037947 330 F--EGPLDFQNLAIKIARECGGLPVAITTVATALRNK-SLFVWKDALLQLRSSNHRDISGLDSTVYSSVKLSYNFLKSLE 406 (780)
Q Consensus 330 ~--~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~ 406 (780)
. ...+.++++|++|+++|+|+|||+.++|+.|+.| +..+|+++.+.+.+....+.++..+.++.++.+||++||+ +
T Consensus 333 ~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~-~ 411 (889)
T KOG4658|consen 333 NTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPE-E 411 (889)
T ss_pred ccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhH-H
Confidence 4 3345589999999999999999999999999988 8889999999998876666666788999999999999996 4
Q ss_pred HHHHHHhhcccCCCCCcChhHHHHHHhccCcCCCcccHHHHHHHHHHHHHHHHhhcccccCC---CCCceeechhhHHHH
Q 037947 407 AQSLFLLCSLLNDGSRIPIDDLLRCAMGLDLFSDVFSLEEARSRMHHLIDDLQASCLLLDGD---NKDDVKMHDVIHDIA 483 (780)
Q Consensus 407 ~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~---~~~~~~mHdlv~d~~ 483 (780)
+|.||+|||+||+||.|+++.|+.+||||||+.+....+.+++.+++++.+|++++|++... ...+|+|||+|||+|
T Consensus 412 lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~a 491 (889)
T KOG4658|consen 412 LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMA 491 (889)
T ss_pred HHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHH
Confidence 99999999999999999999999999999999886667778889999999999999998764 457999999999999
Q ss_pred HHHhh-----ccCeeeeecccchHHHHhhcccCCceEEEccCCCCccCCCccCCCCccEEEeccCcc-ccccCchhhcCC
Q 037947 484 VSTAR-----DKHMFNIQNVSDLKEVLEDLTQKDPIAISLPCRDIQELPERLECPKLKLFFLFSKKL-SLVIPDLFFEGV 557 (780)
Q Consensus 484 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~l 557 (780)
.++|. +++.+...+ ..............+|++++.++.+..++....+++|++|.+..|.. ...++..+|..+
T Consensus 492 l~ias~~~~~~e~~iv~~~-~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m 570 (889)
T KOG4658|consen 492 LWIASDFGKQEENQIVSDG-VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSL 570 (889)
T ss_pred HHHhccccccccceEEECC-cCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhC
Confidence 99997 666433322 12211111122235899999999999999988999999999999973 457888889999
Q ss_pred CCccEEEecCCC-CCCCCccccCCCCCCEEEccCccCCC-cccccccCCCcEEEeecC-CCCccChhhcCCCCCCEEecC
Q 037947 558 PSLQVLSLNGFH-FPSLPSTLGCLINLQTLSFECCVLGD-VATVGALKKLVILSFRNS-HIEQLPEEIGQLTRLKLLDLS 634 (780)
Q Consensus 558 ~~Lr~L~l~~~~-~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~ 634 (780)
+.||||||++|. +..+|++|+.|.|||||+++++.+.. |.++++|++|.+||+..+ .+..+|.....|++|++|.+.
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLP 650 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEee
Confidence 999999999875 77999999999999999999999988 889999999999999987 455566666779999999997
Q ss_pred CCC-CCcccCccccCCCcccceeecc
Q 037947 635 NCS-KLKSIRPNVISNLPRLEELYMG 659 (780)
Q Consensus 635 ~~~-~l~~~~~~~l~~l~~L~~L~l~ 659 (780)
... ......-..+.+|.+|+.+...
T Consensus 651 ~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 651 RSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred ccccccchhhHHhhhcccchhhheee
Confidence 632 1112212234455555555543
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.1e-55 Score=533.30 Aligned_cols=565 Identities=20% Similarity=0.291 Sum_probs=396.6
Q ss_pred CccccCCchHHHHHHHHHHc--cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEE---ccCC---------
Q 037947 149 GYEQFESRMPTFQDIMEALK--DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVV---SQKP--------- 214 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~~--------- 214 (780)
+.++++||+..++++..+|. .+++++|+|+||||+||||||+.+|+.... +|++.+|+.. +...
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~--~F~g~vfv~~~~v~~~~~~~~~~~~~ 259 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSR--QFQSSVFIDRAFISKSMEIYSSANPD 259 (1153)
T ss_pred ccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhh--cCCeEEEeeccccccchhhccccccc
Confidence 45679999999999998875 567899999999999999999999998765 4988887742 1110
Q ss_pred --C-HHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEE
Q 037947 215 --D-YKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLL 291 (780)
Q Consensus 215 --~-~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iiv 291 (780)
+ ...+..+++.++........ .....+++.|+++|+||||||||+..+|+.+.... ...++||+|||
T Consensus 260 ~~~~~~~l~~~~l~~il~~~~~~~---~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~-------~~~~~GsrIIi 329 (1153)
T PLN03210 260 DYNMKLHLQRAFLSEILDKKDIKI---YHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQT-------QWFGSGSRIIV 329 (1153)
T ss_pred ccchhHHHHHHHHHHHhCCCCccc---CCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhC-------ccCCCCcEEEE
Confidence 1 12344444444432211111 01246778899999999999999999998887655 44578999999
Q ss_pred EecchhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCC-CCCChhHHHHHHHHHhCCChHHHHHHHHHHhCCChhHHH
Q 037947 292 TSRRKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFE-GPLDFQNLAIKIARECGGLPVAITTVATALRNKSLFVWK 370 (780)
Q Consensus 292 Ttr~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~ 370 (780)
|||+..++. ..+...+|+++.+++++||+||+++||... .++++.+++++|+++|+|+|||++++|+.|++++..+|+
T Consensus 330 TTrd~~vl~-~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~ 408 (1153)
T PLN03210 330 ITKDKHFLR-AHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWM 408 (1153)
T ss_pred EeCcHHHHH-hcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHH
Confidence 999999863 345668999999999999999999999544 345678999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCchhhhhccccccccccCchhHHHHHHhhcccCCCCCcChhHHHHHHhccCcCCCcccHHHHHHH
Q 037947 371 DALLQLRSSNHRDISGLDSTVYSSVKLSYNFLKSLEAQSLFLLCSLLNDGSRIPIDDLLRCAMGLDLFSDVFSLEEARSR 450 (780)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~ 450 (780)
.++.++.... +..+..+|++||+.|+++..|.||+++|.|+.+..++ .+..|++.+....
T Consensus 409 ~~l~~L~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~---------- 468 (1153)
T PLN03210 409 DMLPRLRNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV---------- 468 (1153)
T ss_pred HHHHHHHhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc----------
Confidence 9999987532 3578999999999998645899999999999876553 4667888765421
Q ss_pred HHHHHHHHHhhcccccCCCCCceeechhhHHHHHHHhhccCe-----eeeecccchHHHHhhcc-cCCceEEEccCCCCc
Q 037947 451 MHHLIDDLQASCLLLDGDNKDDVKMHDVIHDIAVSTARDKHM-----FNIQNVSDLKEVLEDLT-QKDPIAISLPCRDIQ 524 (780)
Q Consensus 451 ~~~~~~~L~~~~l~~~~~~~~~~~mHdlv~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~l~l~~~~~~ 524 (780)
...++.|++++|++.. .+.++|||++|++|+++++++.. ....+..++........ ...++.+++....+.
T Consensus 469 -~~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~ 545 (1153)
T PLN03210 469 -NIGLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID 545 (1153)
T ss_pred -hhChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence 1137789999999765 35799999999999999855420 01111122222222111 123566655443333
Q ss_pred cCC----CccCCCCccEEEe-------------------------------ccCccccccCchhhcCCCCccEEEecCCC
Q 037947 525 ELP----ERLECPKLKLFFL-------------------------------FSKKLSLVIPDLFFEGVPSLQVLSLNGFH 569 (780)
Q Consensus 525 ~~~----~~~~~~~L~~L~l-------------------------------~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~ 569 (780)
++. .+..+++|+.|.+ .++... .+|..+ ...+|+.|++.++.
T Consensus 546 ~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~ 622 (1153)
T PLN03210 546 ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSK 622 (1153)
T ss_pred eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcc
Confidence 221 1124455555544 333322 344433 35677888888888
Q ss_pred CCCCCccccCCCCCCEEEccCcc-CCCcccccccCCCcEEEeecC-CCCccChhhcCCCCCCEEecCCCCCCcccCcccc
Q 037947 570 FPSLPSTLGCLINLQTLSFECCV-LGDVATVGALKKLVILSFRNS-HIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVI 647 (780)
Q Consensus 570 ~~~lp~~i~~l~~L~~L~L~~~~-~~~~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l 647 (780)
+..+|..+..+++|++|+|++|. +..++.++.+.+|++|++++| .+..+|..++.+++|++|++++|+.++.+|.. +
T Consensus 623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i 701 (1153)
T PLN03210 623 LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I 701 (1153)
T ss_pred ccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C
Confidence 88888888888899999998765 555677888899999999887 57888999999999999999998888888654 3
Q ss_pred CCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCCCCCccccccCccEEEEEecCc---cc------
Q 037947 648 SNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDV---WS------ 718 (780)
Q Consensus 648 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~---~~------ 718 (780)
++++|+.|++++|.....++ + ...+|+.|+++.|.+..+|..+.+++|++|.+..+.. +.
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~p--------~--~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~ 770 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSFP--------D--ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLT 770 (1153)
T ss_pred -CCCCCCEEeCCCCCCccccc--------c--ccCCcCeeecCCCccccccccccccccccccccccchhhccccccccc
Confidence 78899999998874321111 1 2357888888888888888877777777776654221 00
Q ss_pred --ccccccccceeEeecCCCcc-chhHHHHHhcccceeeccccccccccc
Q 037947 719 --WTGKYETSRTLKLKLDNPMY-LEHGIKMLLRRTEDLHLDKLNGFQNVL 765 (780)
Q Consensus 719 --~~~~~~~l~~l~L~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~~ 765 (780)
....++.++.|.|+.+.... .|..+ ..+++|+.|+|.+|+.++.+|
T Consensus 771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si-~~L~~L~~L~Ls~C~~L~~LP 819 (1153)
T PLN03210 771 PLMTMLSPSLTRLFLSDIPSLVELPSSI-QNLHKLEHLEIENCINLETLP 819 (1153)
T ss_pred hhhhhccccchheeCCCCCCccccChhh-hCCCCCCEEECCCCCCcCeeC
Confidence 01122344555554433222 23332 234666666666666666555
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.1e-44 Score=374.73 Aligned_cols=277 Identities=33% Similarity=0.545 Sum_probs=227.3
Q ss_pred chHHHHHHHHHHcc--CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcC-
Q 037947 156 RMPTFQDIMEALKD--DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLG- 232 (780)
Q Consensus 156 r~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~- 232 (780)
|+.++++|.++|.+ ++.++|+|+||||+||||||..++++...+.+|+.++|+++++..+...++..|+.+++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999997 789999999999999999999999997788889999999999999999999999999988743
Q ss_pred --CCCCHHHHHHHHHHHhccCcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhHHhhhcCCcceEE
Q 037947 233 --EHEDVSERAHLLRQRLKASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLLYNEMNSQKNFL 310 (780)
Q Consensus 233 --~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~~~~~~~~~~~~ 310 (780)
...+.++....+.+.|+++++||||||||+...|+.+...+ +....|++||||||+..++.........++
T Consensus 81 ~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~-------~~~~~~~kilvTTR~~~v~~~~~~~~~~~~ 153 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPL-------PSFSSGSKILVTTRDRSVAGSLGGTDKVIE 153 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH--------------HCHHSS-EEEEEESCGGGGTTHHSCEEEEE
T ss_pred cccccccccccccchhhhccccceeeeeeeccccccccccccc-------cccccccccccccccccccccccccccccc
Confidence 33457789999999999999999999999999998887766 667789999999999988643333367899
Q ss_pred cCCCChHHHHHHHHHhhCCCC--CCCChhHHHHHHHHHhCCChHHHHHHHHHHhCC-ChhHHHHHHHHHhcCCCCCCCCc
Q 037947 311 INVLSDQEAVQLFEKMSGVFE--GPLDFQNLAIKIARECGGLPVAITTVATALRNK-SLFVWKDALLQLRSSNHRDISGL 387 (780)
Q Consensus 311 l~~L~~~~~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~-~~~~w~~~~~~l~~~~~~~~~~~ 387 (780)
+++|+.++|++||.+.++... .++..++.+++|+++|+|+||||+++|++|+.+ +..+|+++++++....... .+.
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~-~~~ 232 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRES-RDY 232 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCS-SGS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccc
Confidence 999999999999999998544 455667899999999999999999999999754 7889999999877665321 225
Q ss_pred hhhhhccccccccccCchhHHHHHHhhcccCCCCCcChhHHHHHHhccCcCCCc
Q 037947 388 DSTVYSSVKLSYNFLKSLEAQSLFLLCSLLNDGSRIPIDDLLRCAMGLDLFSDV 441 (780)
Q Consensus 388 ~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~ 441 (780)
...+..++.+||+.||++ +|.||+|||+||+++.|+++.|+++|++||||+..
T Consensus 233 ~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp CHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred cccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 678999999999999995 99999999999999999999999999999999753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.75 E-value=9.4e-18 Score=205.43 Aligned_cols=236 Identities=20% Similarity=0.238 Sum_probs=144.8
Q ss_pred CceEEEccCCCCc-cCCCcc--CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCC-CCCccccCCCCCCEEE
Q 037947 512 DPIAISLPCRDIQ-ELPERL--ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGCLINLQTLS 587 (780)
Q Consensus 512 ~~~~l~l~~~~~~-~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~ 587 (780)
..+.|.+.+|.+. .+|... .+++|+.|++++|.+.+.+|. ..+++|++|++++|.++ .+|..++.+++|++|+
T Consensus 94 ~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD 170 (968)
T ss_pred CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence 4677777777664 455432 677777777777777666664 34667777777777766 5677777888888888
Q ss_pred ccCccCCC--cccccccCCCcEEEeecCCCC-ccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCc
Q 037947 588 FECCVLGD--VATVGALKKLVILSFRNSHIE-QLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTH 664 (780)
Q Consensus 588 L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 664 (780)
+++|.+.. |..++++.+|++|++++|.+. .+|..++++++|++|++++ +.+....|..++++++|++|++++|...
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 249 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY-NNLSGEIPYEIGGLTSLNHLDLVYNNLT 249 (968)
T ss_pred CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC-CccCCcCChhHhcCCCCCEEECcCceec
Confidence 88877654 567778888888888777654 5677777788888888877 3444433555777778888887777443
Q ss_pred cccccCCccchhhhcCCCCCCEEEeeccCCC-CCCccc-cccCccEEEEEecC----cccccccccccceeEeecCCCcc
Q 037947 665 WEIEGQNNASLAELNQLSRLTTLEMHILDAQ-VMPREL-FSVGLERYKIFLGD----VWSWTGKYETSRTLKLKLDNPMY 738 (780)
Q Consensus 665 ~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~i~~~~----~~~~~~~~~~l~~l~L~~~~~~~ 738 (780)
...+ ..+.++++|+.|+++.|.+. .+|..+ .+++|++|++..+. .+.++..++.++.+.+..+....
T Consensus 250 ~~~p-------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~ 322 (968)
T PLN00113 250 GPIP-------SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322 (968)
T ss_pred cccC-------hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC
Confidence 2222 34556666666666666543 344444 45566666665433 22334444555555554433222
Q ss_pred chhHHHHHhcccceeecccc
Q 037947 739 LEHGIKMLLRRTEDLHLDKL 758 (780)
Q Consensus 739 ~~~~~~~~l~~L~~L~l~~~ 758 (780)
..+.....+++|+.|+++++
T Consensus 323 ~~~~~~~~l~~L~~L~L~~n 342 (968)
T PLN00113 323 KIPVALTSLPRLQVLQLWSN 342 (968)
T ss_pred cCChhHhcCCCCCEEECcCC
Confidence 21111223455666665553
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.73 E-value=2.3e-17 Score=201.98 Aligned_cols=236 Identities=22% Similarity=0.229 Sum_probs=146.8
Q ss_pred CceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCC-CCCccccCCCCCCEEEccC
Q 037947 512 DPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGCLINLQTLSFEC 590 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~L~~ 590 (780)
..++|.+.+|.+....+...+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+. .+|..++++++|++|++++
T Consensus 119 ~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 197 (968)
T PLN00113 119 SLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197 (968)
T ss_pred CCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccC
Confidence 477778777776543333457778888888887776666654 66788888888887765 5677778888888888888
Q ss_pred ccCCC--cccccccCCCcEEEeecCCCC-ccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCcccc
Q 037947 591 CVLGD--VATVGALKKLVILSFRNSHIE-QLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEI 667 (780)
Q Consensus 591 ~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 667 (780)
|.+.. |..++++.+|++|++++|.+. .+|..++.+++|++|++++| .+....|..++++++|++|++++|......
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 276 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCc-eeccccChhHhCCCCCCEEECcCCeeeccC
Confidence 77654 667777888888888777665 57777778888888888773 444444555777777888877776433222
Q ss_pred ccCCccchhhhcCCCCCCEEEeeccCCC-CCCccc-cccCccEEEEEecCc----ccccccccccceeEeecCCCccc-h
Q 037947 668 EGQNNASLAELNQLSRLTTLEMHILDAQ-VMPREL-FSVGLERYKIFLGDV----WSWTGKYETSRTLKLKLDNPMYL-E 740 (780)
Q Consensus 668 ~~~~~~~l~~l~~L~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~i~~~~~----~~~~~~~~~l~~l~L~~~~~~~~-~ 740 (780)
+ ..+.++++|+.|+++.|.+. .+|..+ .+++|+.|.+..+.. +.++..++.++.+.|..+..... +
T Consensus 277 p-------~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 349 (968)
T PLN00113 277 P-------PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP 349 (968)
T ss_pred c-------hhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCC
Confidence 1 34455666666666666543 334433 455666666654332 22334445555555544332211 2
Q ss_pred hHHHHHhcccceeeccc
Q 037947 741 HGIKMLLRRTEDLHLDK 757 (780)
Q Consensus 741 ~~~~~~l~~L~~L~l~~ 757 (780)
.. ...+++|+.|++++
T Consensus 350 ~~-l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 350 KN-LGKHNNLTVLDLST 365 (968)
T ss_pred hH-HhCCCCCcEEECCC
Confidence 22 22235555555554
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.68 E-value=8.4e-18 Score=175.37 Aligned_cols=257 Identities=18% Similarity=0.189 Sum_probs=197.1
Q ss_pred ceEEEccCCCCccCCCc--cCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCcc-ccCCCCCCEEEcc
Q 037947 513 PIAISLPCRDIQELPER--LECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPST-LGCLINLQTLSFE 589 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L~ 589 (780)
+|.+.++.|.+.+++.. ..-.+++.|+|++|.++ .+..+-|..+.+|-.|.|+.|.++.+|.. +.+|++|+.|+|.
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLn 229 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLN 229 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcc
Confidence 67788888888887643 35678999999999987 45555578889999999999999999864 4559999999999
Q ss_pred CccCCCc--ccccccCCCcEEEeecCCCCccChh-hcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccc
Q 037947 590 CCVLGDV--ATVGALKKLVILSFRNSHIEQLPEE-IGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWE 666 (780)
Q Consensus 590 ~~~~~~~--~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 666 (780)
.|++... -.+..|.+|+.|.+..|.|..|-.+ +..+.++++|+|.. +++..+..+.+-.|++|+.|++++|.+.-.
T Consensus 230 rN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri 308 (873)
T KOG4194|consen 230 RNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQRI 308 (873)
T ss_pred ccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccchhhhhee
Confidence 9998763 5678899999999999999988664 56789999999998 788888888888999999999999864321
Q ss_pred cccCCccchhhhcCCCCCCEEEeeccCCCCCCccc--cccCccEEEEEecCccc----ccccccccceeEeecCC---Cc
Q 037947 667 IEGQNNASLAELNQLSRLTTLEMHILDAQVMPREL--FSVGLERYKIFLGDVWS----WTGKYETSRTLKLKLDN---PM 737 (780)
Q Consensus 667 ~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~i~~~~~~~----~~~~~~~l~~l~L~~~~---~~ 737 (780)
.. ..-...++|+.|+++.|.+..+++.. .+..|++|.+..+.... .+..+.++..|+|.-+. ++
T Consensus 309 h~-------d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 309 HI-------DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred ec-------chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence 11 23344567889999999999988876 77788888887665432 24455666777764432 44
Q ss_pred cchhHHHHHhcccceeeccccccccccccccCCCcccCccCCC
Q 037947 738 YLEHGIKMLLRRTEDLHLDKLNGFQNVLHELDGEGFPRLKHLL 780 (780)
Q Consensus 738 ~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L~~L~ 780 (780)
+.....+..+|+|+.|.+.+ ++++.++..-+ .||+.|++|+
T Consensus 382 EDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAf-sgl~~LE~Ld 422 (873)
T KOG4194|consen 382 EDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAF-SGLEALEHLD 422 (873)
T ss_pred ecchhhhccchhhhheeecC-ceeeecchhhh-ccCcccceec
Confidence 44444455578888888888 78888875532 6788888875
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.64 E-value=5.6e-18 Score=177.57 Aligned_cols=198 Identities=21% Similarity=0.306 Sum_probs=161.4
Q ss_pred CceEEEccCCCCccCCCcc-CCCCccEEEeccCccc-cccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEcc
Q 037947 512 DPIAISLPCRDIQELPERL-ECPKLKLFFLFSKKLS-LVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFE 589 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 589 (780)
+..||++..|.+..+..-. .++.||++.+..|++. ..+|.++| ++.-|.+|||+.|.+++.|..+..-+++-+|+|+
T Consensus 56 kLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS 134 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLS 134 (1255)
T ss_pred hhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEcc
Confidence 4788999888887776544 8999999999998765 34888886 5999999999999999999999999999999999
Q ss_pred CccCCC-ccc-ccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCcccc
Q 037947 590 CCVLGD-VAT-VGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEI 667 (780)
Q Consensus 590 ~~~~~~-~~~-i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 667 (780)
+|+|.. |.+ +-+|..|-+|||++|.++.||+.+..|.+|++|.|++ +.+..+....+.++++|++|.+++.+..
T Consensus 135 ~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~-NPL~hfQLrQLPsmtsL~vLhms~TqRT--- 210 (1255)
T KOG0444|consen 135 YNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN-NPLNHFQLRQLPSMTSLSVLHMSNTQRT--- 210 (1255)
T ss_pred cCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCC-ChhhHHHHhcCccchhhhhhhcccccch---
Confidence 999988 444 4589999999999999999999999999999999998 5555443344667889999998876421
Q ss_pred ccCCccchhhhcCCCCCCEEEeeccCCCCCCccc-cccCccEEEEEecCcc
Q 037947 668 EGQNNASLAELNQLSRLTTLEMHILDAQVMPREL-FSVGLERYKIFLGDVW 717 (780)
Q Consensus 668 ~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~i~~~~~~ 717 (780)
......++..|.+|+.++++.|++...|..+ .+++|++|+++++...
T Consensus 211 ---l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 211 ---LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred ---hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCcee
Confidence 1112245666778888999999988888887 8888899888776543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.63 E-value=1.6e-17 Score=174.21 Aligned_cols=239 Identities=21% Similarity=0.266 Sum_probs=163.1
Q ss_pred CceEEEccCCCCccCCCcc-CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccC
Q 037947 512 DPIAISLPCRDIQELPERL-ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFEC 590 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 590 (780)
+...|.++.|.+.+.|... ..+++-.|++++|++. .||..+|-++.-|-+|||++|.+..+|+.+.+|.+|++|.|++
T Consensus 104 dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 104 DLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred cceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCC
Confidence 4778888899999988766 6788889999999886 7898888899999999999999999999999999999999998
Q ss_pred ccCCC--cc-------------------------cccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccC
Q 037947 591 CVLGD--VA-------------------------TVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIR 643 (780)
Q Consensus 591 ~~~~~--~~-------------------------~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~ 643 (780)
|.+.. +. ++..|.||..+|++.|++..+|..+.++.+|+.|+|++ +.++.+.
T Consensus 183 NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~-N~iteL~ 261 (1255)
T KOG0444|consen 183 NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSG-NKITELN 261 (1255)
T ss_pred ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCc-Cceeeee
Confidence 87543 33 34444444444444444444555555555555555554 4444442
Q ss_pred ccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccC--CCCCCccc-cccCccEEEEEecC---cc
Q 037947 644 PNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILD--AQVMPREL-FSVGLERYKIFLGD---VW 717 (780)
Q Consensus 644 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~--~~~~~~~~-~~~~L~~L~i~~~~---~~ 717 (780)
.. ++.+.+|++|+++.|+. ......+.+|++|++|.+..|. ...+|+.+ .+.+|+.+....+. +|
T Consensus 262 ~~-~~~W~~lEtLNlSrNQL--------t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVP 332 (1255)
T KOG0444|consen 262 MT-EGEWENLETLNLSRNQL--------TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVP 332 (1255)
T ss_pred cc-HHHHhhhhhhccccchh--------ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCc
Confidence 22 34444555555554432 1222455666666766666654 44566666 56666666554433 23
Q ss_pred cccccccccceeEeecCCCccchhHHHHHhcccceeecccccccc
Q 037947 718 SWTGKYETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDKLNGFQ 762 (780)
Q Consensus 718 ~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 762 (780)
.-+..|+.++.|+|..+.-+.+|..+. +||.|+.|++.+.+++-
T Consensus 333 EglcRC~kL~kL~L~~NrLiTLPeaIH-lL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 333 EGLCRCVKLQKLKLDHNRLITLPEAIH-LLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhhhhHHHHHhcccccceeechhhhh-hcCCcceeeccCCcCcc
Confidence 446678888888888877777777754 56999999999988875
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.60 E-value=1.8e-14 Score=176.80 Aligned_cols=246 Identities=20% Similarity=0.232 Sum_probs=168.2
Q ss_pred CceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCC-CCCCCccccCCCCCCEEEccC
Q 037947 512 DPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFH-FPSLPSTLGCLINLQTLSFEC 590 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~lp~~i~~l~~L~~L~L~~ 590 (780)
..|.|.+.++.+..+|......+|+.|++.++.+. .++.++ ..+++|+.|+|+++. +..+| .++.+++|++|+|++
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-KLWDGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD 666 (1153)
T ss_pred ccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-cccccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecC
Confidence 47888888888888888778889999999988765 456554 678899999998765 55666 477889999999988
Q ss_pred cc-CCC-cccccccCCCcEEEeecC-CCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCcccc
Q 037947 591 CV-LGD-VATVGALKKLVILSFRNS-HIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEI 667 (780)
Q Consensus 591 ~~-~~~-~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 667 (780)
|. +.. |.+++++.+|+.|++++| .++.+|..+ ++++|++|++++|..+..+|.. .++|++|++++|.+.. +
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~~-l 740 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI----STNISWLDLDETAIEE-F 740 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc----cCCcCeeecCCCcccc-c
Confidence 76 344 778889999999999886 688888766 7888888888888766655321 2334444444432110 0
Q ss_pred cc-----------------------------------------------CCccchhhhcCCCCCCEEEeecc-CCCCCCc
Q 037947 668 EG-----------------------------------------------QNNASLAELNQLSRLTTLEMHIL-DAQVMPR 699 (780)
Q Consensus 668 ~~-----------------------------------------------~~~~~l~~l~~L~~L~~L~l~~~-~~~~~~~ 699 (780)
+. ........++++++|+.|++..| .+..+|.
T Consensus 741 P~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 741 PSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred cccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 00 00011234566777778887654 4666777
Q ss_pred cccccCccEEEEEecCcc-cccccccccceeEeecCCCccchhHHHHHhcccceeeccccccccccccc
Q 037947 700 ELFSVGLERYKIFLGDVW-SWTGKYETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDKLNGFQNVLHE 767 (780)
Q Consensus 700 ~~~~~~L~~L~i~~~~~~-~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~ 767 (780)
...+++|++|.+.+|... .+.....+++.|.|..+.....|.++. .+++|+.|+|.+|++++.++..
T Consensus 821 ~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~-~l~~L~~L~L~~C~~L~~l~~~ 888 (1153)
T PLN03210 821 GINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIE-KFSNLSFLDMNGCNNLQRVSLN 888 (1153)
T ss_pred CCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHh-cCCCCCEEECCCCCCcCccCcc
Confidence 666777888887765543 223334556666665554444455543 4689999999999998887754
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.58 E-value=1.4e-15 Score=159.11 Aligned_cols=244 Identities=18% Similarity=0.248 Sum_probs=157.0
Q ss_pred CceEEEccCCCCccCCCcc-CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCc-cccCCCCCCEEEcc
Q 037947 512 DPIAISLPCRDIQELPERL-ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGCLINLQTLSFE 589 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~ 589 (780)
+...+++..|.+..+|.+. ...+++.|+|..|.+. .+...-+.-++.||+|||+.|.++++|. ++..-.++++|+|+
T Consensus 103 nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La 181 (873)
T KOG4194|consen 103 NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLA 181 (873)
T ss_pred cceeeeeccchhhhcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeec
Confidence 4667777778888888776 4556888888888776 3444445677889999999999887764 55566889999999
Q ss_pred CccCCC--cccccccCCCcEEEeecCCCCccChh-hcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccc
Q 037947 590 CCVLGD--VATVGALKKLVILSFRNSHIEQLPEE-IGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWE 666 (780)
Q Consensus 590 ~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 666 (780)
+|.|+. ...+..+.+|.+|.|++|.++.||.. +.+|++|+.|+|.. +.++-+.-..+..|.+|+.|.+..|.+..-
T Consensus 182 ~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnr-N~irive~ltFqgL~Sl~nlklqrN~I~kL 260 (873)
T KOG4194|consen 182 SNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNR-NRIRIVEGLTFQGLPSLQNLKLQRNDISKL 260 (873)
T ss_pred cccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccc-cceeeehhhhhcCchhhhhhhhhhcCcccc
Confidence 999887 45788888999999999999998874 44588888888877 455443222345555555555554432110
Q ss_pred cccC-----------------CccchhhhcCCCCCCEEEeeccCCCCCCccc--cccCccEEEEEecCcccc----cccc
Q 037947 667 IEGQ-----------------NNASLAELNQLSRLTTLEMHILDAQVMPREL--FSVGLERYKIFLGDVWSW----TGKY 723 (780)
Q Consensus 667 ~~~~-----------------~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~i~~~~~~~~----~~~~ 723 (780)
-.|. ....-+.+-+|+.|+.|+++.|.+..+..+- ..++|+.|+++.+....+ +..+
T Consensus 261 ~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L 340 (873)
T KOG4194|consen 261 DDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL 340 (873)
T ss_pred cCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHH
Confidence 0000 0000123345566666777777666554443 556677777766554432 2333
Q ss_pred cccceeEeecCCCccchhHHHHHhcccceeeccc
Q 037947 724 ETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDK 757 (780)
Q Consensus 724 ~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 757 (780)
..+..|.|+-+....+..+.+..+.+|+.|+|++
T Consensus 341 ~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 341 SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRS 374 (873)
T ss_pred HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcC
Confidence 4445555555444444555555667777777777
No 11
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.53 E-value=1.6e-16 Score=140.92 Aligned_cols=167 Identities=24% Similarity=0.385 Sum_probs=126.7
Q ss_pred CccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCC-cccccc
Q 037947 523 IQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGD-VATVGA 601 (780)
Q Consensus 523 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~ 601 (780)
+.+++...+++++..|.++.|.++ .+|+.+ ..+.+|.+|++.+|.++++|.+|+.++.|+.|+++.|++.. |..+|.
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~-~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLT-VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred HhhcccccchhhhhhhhcccCcee-ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 345555566777777788888776 455555 56788888888888888888888888888888888888766 778888
Q ss_pred cCCCcEEEeecCCCC--ccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhc
Q 037947 602 LKKLVILSFRNSHIE--QLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELN 679 (780)
Q Consensus 602 l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 679 (780)
++-|+.||+..|++. .+|..+..++.|+.|++++ +.++.+||. ++++++||.|.+.+|.. .....+++
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndl--------l~lpkeig 170 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDL--------LSLPKEIG 170 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCch--------hhCcHHHH
Confidence 888888888877665 5788888888888888887 667777655 78888888888877632 22336777
Q ss_pred CCCCCCEEEeeccCCCCCCccc
Q 037947 680 QLSRLTTLEMHILDAQVMPREL 701 (780)
Q Consensus 680 ~L~~L~~L~l~~~~~~~~~~~~ 701 (780)
.|..|+.|++.+|++..+|+.+
T Consensus 171 ~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 171 DLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHhcccceeeecChhh
Confidence 7888888888888888888775
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.47 E-value=1.5e-15 Score=152.18 Aligned_cols=201 Identities=21% Similarity=0.286 Sum_probs=139.8
Q ss_pred ceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCcc
Q 037947 513 PIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCV 592 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~ 592 (780)
...+.++.|++..+|.+.+|+-|..|++..|.+. .+|.....++.+|.+||+..|++++.|..++.|.+|.+||+++|.
T Consensus 208 L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 208 LELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred hHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc
Confidence 4566788889999998889999999999888876 688888888999999999999999999999999999999999999
Q ss_pred CCC-cccccccCCCcEEEeecCCCCccChh------------------------------------------hcCCCCCC
Q 037947 593 LGD-VATVGALKKLVILSFRNSHIEQLPEE------------------------------------------IGQLTRLK 629 (780)
Q Consensus 593 ~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~------------------------------------------i~~l~~L~ 629 (780)
++. |.++|++ +|+.|.+.||.+..+-.+ +..+.+.+
T Consensus 287 is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tk 365 (565)
T KOG0472|consen 287 ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTK 365 (565)
T ss_pred cccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhh
Confidence 988 7889999 999999988876533221 12233455
Q ss_pred EEecCCCCCCcccCccccCCC--cccceeeccCCCCccccc-----------------cCCccchhhhcCCCCCCEEEee
Q 037947 630 LLDLSNCSKLKSIRPNVISNL--PRLEELYMGNSFTHWEIE-----------------GQNNASLAELNQLSRLTTLEMH 690 (780)
Q Consensus 630 ~L~l~~~~~l~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~-----------------~~~~~~l~~l~~L~~L~~L~l~ 690 (780)
.|++++ ..++.+|...+..- .-....+++.|+.. +.+ ........+++.+++|..|+++
T Consensus 366 iL~~s~-~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~ 443 (565)
T KOG0472|consen 366 ILDVSD-KQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLS 443 (565)
T ss_pred hhcccc-cccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecc
Confidence 555554 44444432211110 00223333333211 000 0122333567778888888888
Q ss_pred ccCCCCCCccc-cccCccEEEEEecCcc
Q 037947 691 ILDAQVMPREL-FSVGLERYKIFLGDVW 717 (780)
Q Consensus 691 ~~~~~~~~~~~-~~~~L~~L~i~~~~~~ 717 (780)
+|-...+|.++ .+..|+.++++.+++.
T Consensus 444 NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr 471 (565)
T KOG0472|consen 444 NNLLNDLPEEMGSLVRLQTLNLSFNRFR 471 (565)
T ss_pred cchhhhcchhhhhhhhhheecccccccc
Confidence 88888888887 6666888888766543
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.41 E-value=4.8e-15 Score=131.57 Aligned_cols=149 Identities=23% Similarity=0.401 Sum_probs=131.4
Q ss_pred CCceEEEccCCCCccCCCcc-CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEcc
Q 037947 511 KDPIAISLPCRDIQELPERL-ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFE 589 (780)
Q Consensus 511 ~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 589 (780)
..+++|.++.|.+..+|+.. .+.+|+.|++++|.+. .+|.++ +.++.||.|+++-|.+..+|..++.++.|+.|+|.
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhcc
Confidence 35888999999999888766 8999999999999886 677775 78999999999999999999999999999999999
Q ss_pred CccCCC---cccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCC
Q 037947 590 CCVLGD---VATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFT 663 (780)
Q Consensus 590 ~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 663 (780)
+|++.+ |..+..+..|+.|.++.|.++-+|..+++|++|+.|.+.+ +.+-++|. .++.++.|++|.+.+|..
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpk-eig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPK-EIGDLTRLRELHIQGNRL 185 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcH-HHHHHHHHHHHhccccee
Confidence 999876 6778888899999999999999999999999999999998 67777854 589999999999988854
No 14
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=2e-11 Score=149.00 Aligned_cols=292 Identities=16% Similarity=0.166 Sum_probs=178.2
Q ss_pred ccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc-CCCHHHHHHHHHHHcC
Q 037947 150 YEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-KPDYKAIQNEIAGALG 228 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~ 228 (780)
...++-|....+.+-+ ....+++.|+|++|.||||++..+... ++.++|+++.. ..+...+...++..++
T Consensus 13 ~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~~l~ 83 (903)
T PRK04841 13 LHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIAALQ 83 (903)
T ss_pred ccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHHHHH
Confidence 3456677655554432 245789999999999999999998853 23689999964 4466677777777664
Q ss_pred CCcCCC-------------CCHHHHHHHHHHHhc--cCcEEEEEeCCCCcccc--c-cccCCcccccccccCCCCCcEEE
Q 037947 229 LFLGEH-------------EDVSERAHLLRQRLK--ASRVLVILDDVWNRLDL--D-AVGIPYKNYQNEIKDDRRRCAML 290 (780)
Q Consensus 229 ~~~~~~-------------~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~--~-~l~~~~~~~~~~l~~~~~~s~ii 290 (780)
...... .+.......+...+. +.+++|||||+....+- . .+...+ .....+.++|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~-------~~~~~~~~lv 156 (903)
T PRK04841 84 QATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFL-------RHQPENLTLV 156 (903)
T ss_pred HhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHH-------HhCCCCeEEE
Confidence 211110 112233334444443 58999999999665321 1 121111 3345567888
Q ss_pred EEecchhHH--hhhcCCcceEEcC----CCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHHhCC
Q 037947 291 LTSRRKDLL--YNEMNSQKNFLIN----VLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATALRNK 364 (780)
Q Consensus 291 vTtr~~~v~--~~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~ 364 (780)
||||...-. ....-.....++. +|+.+|+.++|....+... -.+...+|.+.|+|+|+++..++..+...
T Consensus 157 ~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 157 VLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred EEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 999984311 0101112245555 9999999999987765432 23567899999999999999998877643
Q ss_pred ChhHHHHHHHHHhcCCCCCCCCchhhhhccc-cccccccCchhHHHHHHhhcccCCCCCcChhHHHHHHhccCcCCCccc
Q 037947 365 SLFVWKDALLQLRSSNHRDISGLDSTVYSSV-KLSYNFLKSLEAQSLFLLCSLLNDGSRIPIDDLLRCAMGLDLFSDVFS 443 (780)
Q Consensus 365 ~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l-~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~ 443 (780)
... .......+... ....+...+ .-.++.||++ .+..+...|+++ .|+.+.+-... |
T Consensus 233 ~~~-~~~~~~~~~~~-------~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~l~~~l~---~------- 290 (903)
T PRK04841 233 NSS-LHDSARRLAGI-------NASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR---SMNDALIVRVT---G------- 290 (903)
T ss_pred CCc-hhhhhHhhcCC-------CchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc---cCCHHHHHHHc---C-------
Confidence 210 00111111000 011233333 2347799996 999999999988 34433221110 1
Q ss_pred HHHHHHHHHHHHHHHHhhccccc-C-CCCCceeechhhHHHHHHHh
Q 037947 444 LEEARSRMHHLIDDLQASCLLLD-G-DNKDDVKMHDVIHDIAVSTA 487 (780)
Q Consensus 444 ~~~~~~~~~~~~~~L~~~~l~~~-~-~~~~~~~mHdlv~d~~~~~~ 487 (780)
..+ ..+.+++|.+.+++.. . +....|+.|++++++++...
T Consensus 291 ~~~----~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 EEN----GQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CCc----HHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 111 2346788888888653 2 23457999999999998775
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.39 E-value=2.2e-15 Score=151.01 Aligned_cols=243 Identities=25% Similarity=0.323 Sum_probs=134.0
Q ss_pred CceEEEccCCCCccCCCcc-CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccC
Q 037947 512 DPIAISLPCRDIQELPERL-ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFEC 590 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 590 (780)
....+-+.+|+++.+.... .+..+.+|++.+|... .+|+.+ +.+..+..|+.+.|+++.+|..++.+.+|+.|+.++
T Consensus 46 ~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred chhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccc
Confidence 3444555555555543332 5555666666666654 455544 445566666666666666666666666666666666
Q ss_pred ccCCC-cccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCcccccc
Q 037947 591 CVLGD-VATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEG 669 (780)
Q Consensus 591 ~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 669 (780)
|.+.. +++|+.+..|..|+..+|++.++|.+++.+.+|..|++.+ ++++.+||..+. ++.|++|+...|..
T Consensus 124 n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i~-m~~L~~ld~~~N~L------ 195 (565)
T KOG0472|consen 124 NELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHIA-MKRLKHLDCNSNLL------ 195 (565)
T ss_pred cceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHHH-HHHHHhcccchhhh------
Confidence 66655 5666666666666666666666666666666666666666 566666655443 66666666554422
Q ss_pred CCccchhhhcCCCCCCEEEeeccCCCCCCccccccCccEEEEEecCcc----cccccccccceeEeecCCCccchhHHHH
Q 037947 670 QNNASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVW----SWTGKYETSRTLKLKLDNPMYLEHGIKM 745 (780)
Q Consensus 670 ~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~----~~~~~~~~l~~l~L~~~~~~~~~~~~~~ 745 (780)
.....+++.+.+|..|+++.|.+..+|+.-.+..|.+|.+..+..- ....+++.+..++|..++-...|..+-
T Consensus 196 --~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c- 272 (565)
T KOG0472|consen 196 --ETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC- 272 (565)
T ss_pred --hcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHH-
Confidence 1122455556666666666666666664334455555555332211 112233444444444444333443322
Q ss_pred Hhcccceeecccccccccccccc
Q 037947 746 LLRRTEDLHLDKLNGFQNVLHEL 768 (780)
Q Consensus 746 ~l~~L~~L~l~~~~~l~~~~~~~ 768 (780)
++.+|..|++++ +.++.++.+.
T Consensus 273 lLrsL~rLDlSN-N~is~Lp~sL 294 (565)
T KOG0472|consen 273 LLRSLERLDLSN-NDISSLPYSL 294 (565)
T ss_pred HhhhhhhhcccC-CccccCCccc
Confidence 235566666666 5555555443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.37 E-value=3.2e-12 Score=146.82 Aligned_cols=221 Identities=18% Similarity=0.252 Sum_probs=117.0
Q ss_pred CceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCc
Q 037947 512 DPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECC 591 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 591 (780)
.++.|.+.+|.+..+|... +++|+.|++++|.+. .+|..+. ..|+.|+|++|.+..+|..+. .+|++|++++|
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENL-QGNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRITELPERLP--SALQSLDLFHN 272 (754)
T ss_pred CCcEEEecCCCCCcCChhh-ccCCCEEECCCCccc-cCChhhh---ccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence 3556666666666555432 245666666666554 3454332 356666666666666655543 35666666666
Q ss_pred cCCC-cccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccC
Q 037947 592 VLGD-VATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQ 670 (780)
Q Consensus 592 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 670 (780)
.+.. |..+. .+|++|++++|.++.+|..+. .+|++|++++ +.++.+|.. + .++|+.|++++|.+.. ++
T Consensus 273 ~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~-l--~~sL~~L~Ls~N~Lt~-LP-- 341 (754)
T PRK15370 273 KISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPET-L--PPGLKTLEAGENALTS-LP-- 341 (754)
T ss_pred ccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCcc-c--cccceeccccCCcccc-CC--
Confidence 6555 22232 356666666666666655432 3566666665 455555432 2 2456666666654321 11
Q ss_pred CccchhhhcCCCCCCEEEeeccCCCCCCccccccCccEEEEEecCcccccccc-cccceeEeecCCCccchhHHHH---H
Q 037947 671 NNASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVWSWTGKY-ETSRTLKLKLDNPMYLEHGIKM---L 746 (780)
Q Consensus 671 ~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~-~~l~~l~L~~~~~~~~~~~~~~---~ 746 (780)
..+ .++|+.|+++.|.+..+|..+ .++|+.|++..+....++... ..++.+.++.+....+|..+.. .
T Consensus 342 -----~~l--~~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt~LP~~l~~sL~~LdLs~N~L~~LP~sl~~~~~~ 413 (754)
T PRK15370 342 -----ASL--PPELQVLDVSKNQITVLPETL-PPTITTLDVSRNALTNLPENLPAALQIMQASRNNLVRLPESLPHFRGE 413 (754)
T ss_pred -----hhh--cCcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCCCCCHhHHHHHHHHhhccCCcccCchhHHHHhhc
Confidence 111 146777777777766666654 356777777665544332222 2345555555443333433322 2
Q ss_pred hcccceeecccc
Q 037947 747 LRRTEDLHLDKL 758 (780)
Q Consensus 747 l~~L~~L~l~~~ 758 (780)
+|++..|.+.+.
T Consensus 414 ~~~l~~L~L~~N 425 (754)
T PRK15370 414 GPQPTRIIVEYN 425 (754)
T ss_pred CCCccEEEeeCC
Confidence 456677777663
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.34 E-value=6.9e-12 Score=143.13 Aligned_cols=217 Identities=19% Similarity=0.172 Sum_probs=117.2
Q ss_pred CceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCcccc-------------
Q 037947 512 DPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLG------------- 578 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~------------- 578 (780)
.++.|.+..|.+..+|. .+++|++|++++|.+. .+|.. .+.|+.|++++|.++.+|....
T Consensus 223 ~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lt-sLP~l----p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt 295 (788)
T PRK15387 223 HITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-SLPVL----PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT 295 (788)
T ss_pred CCCEEEccCCcCCCCCC--CCCCCcEEEecCCccC-cccCc----ccccceeeccCCchhhhhhchhhcCEEECcCCccc
Confidence 35666666666666664 2466677777666655 34421 2345555555555444443110
Q ss_pred ----CCCCCCEEEccCccCCCcccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccc
Q 037947 579 ----CLINLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLE 654 (780)
Q Consensus 579 ----~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 654 (780)
.+++|++|++++|.+..++.+ ..+|+.|++++|.+..+|. ...+|++|++++ ++++.+|+. ..+|+
T Consensus 296 ~LP~~p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP~---lp~~Lq~LdLS~-N~Ls~LP~l----p~~L~ 365 (788)
T PRK15387 296 SLPVLPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPT---LPSGLQELSVSD-NQLASLPTL----PSELY 365 (788)
T ss_pred cccccccccceeECCCCccccCCCC--cccccccccccCccccccc---cccccceEecCC-CccCCCCCC----Ccccc
Confidence 123455555555544442221 1234444455555544443 113566666665 555555431 13455
Q ss_pred eeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCCCCCccccccCccEEEEEecCcccccccccccceeEeecC
Q 037947 655 ELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVWSWTGKYETSRTLKLKLD 734 (780)
Q Consensus 655 ~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~l~~l~L~~~ 734 (780)
.|++++|.+.. ++ . ...+|+.|+++.|.+..+|... ++|+.|+++.+....+...+..++.|.+..+
T Consensus 366 ~L~Ls~N~L~~-LP--------~--l~~~L~~LdLs~N~Lt~LP~l~--s~L~~LdLS~N~LssIP~l~~~L~~L~Ls~N 432 (788)
T PRK15387 366 KLWAYNNRLTS-LP--------A--LPSGLKELIVSGNRLTSLPVLP--SELKELMVSGNRLTSLPMLPSGLLSLSVYRN 432 (788)
T ss_pred eehhhcccccc-Cc--------c--cccccceEEecCCcccCCCCcc--cCCCEEEccCCcCCCCCcchhhhhhhhhccC
Confidence 55555553321 11 1 1246788888888888777653 6788888877665544433445566666555
Q ss_pred CCccchhHHHHHhcccceeeccccc
Q 037947 735 NPMYLEHGIKMLLRRTEDLHLDKLN 759 (780)
Q Consensus 735 ~~~~~~~~~~~~l~~L~~L~l~~~~ 759 (780)
....+|..+. .+++|+.|+|++++
T Consensus 433 qLt~LP~sl~-~L~~L~~LdLs~N~ 456 (788)
T PRK15387 433 QLTRLPESLI-HLSSETTVNLEGNP 456 (788)
T ss_pred cccccChHHh-hccCCCeEECCCCC
Confidence 5444555543 35889999998843
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.33 E-value=5.2e-12 Score=145.08 Aligned_cols=134 Identities=20% Similarity=0.295 Sum_probs=59.1
Q ss_pred ceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCcc
Q 037947 513 PIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCV 592 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~ 592 (780)
++.|.+.+|.+..+|... ..+|+.|++++|.+. .+|..+. ..|+.|++++|.++.+|..+. .+|++|++++|.
T Consensus 222 L~~L~Ls~N~LtsLP~~l-~~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 222 IKTLYANSNQLTSIPATL-PDTIQEMELSINRIT-ELPERLP---SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS 294 (754)
T ss_pred CCEEECCCCccccCChhh-hccccEEECcCCccC-cCChhHh---CCCCEEECcCCccCccccccC--CCCcEEECCCCc
Confidence 445555555544444321 124555555555443 3444331 244555555555554444332 245555555554
Q ss_pred CCC-cccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCC
Q 037947 593 LGD-VATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNS 661 (780)
Q Consensus 593 ~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 661 (780)
++. |..+. .+|+.|++++|.+..+|..+. ++|+.|++++ +.++.+|.. +. ++|+.|++++|
T Consensus 295 Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~-N~Lt~LP~~-l~--~sL~~L~Ls~N 356 (754)
T PRK15370 295 IRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGE-NALTSLPAS-LP--PELQVLDVSKN 356 (754)
T ss_pred cccCcccch--hhHHHHHhcCCccccCCcccc--ccceeccccC-CccccCChh-hc--CcccEEECCCC
Confidence 444 21111 244455555555554444322 3455555544 334444321 21 34555555544
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.32 E-value=2.2e-11 Score=139.12 Aligned_cols=233 Identities=19% Similarity=0.178 Sum_probs=140.5
Q ss_pred CCceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccC
Q 037947 511 KDPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFEC 590 (780)
Q Consensus 511 ~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 590 (780)
..-..|.+..+.+..+|.... ++|+.|.+.+|.+. .+|. ..++|++|++++|.++.+|.. .++|+.|++++
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFS 271 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccC
Confidence 345678888999998887543 58999999999887 4664 358999999999999988854 36788888888
Q ss_pred ccCCCcccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCC-----------------ccc
Q 037947 591 CVLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNL-----------------PRL 653 (780)
Q Consensus 591 ~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l-----------------~~L 653 (780)
|.+..++. .+.+|+.|++++|.+..+|.. +++|+.|++++ +.++.+|.. ...+ .+|
T Consensus 272 N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~l-p~~L~~L~Ls~N~L~~LP~lp~~L 344 (788)
T PRK15387 272 NPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD-NQLASLPAL-PSELCKLWAYNNQLTSLPTLPSGL 344 (788)
T ss_pred Cchhhhhh--chhhcCEEECcCCcccccccc---ccccceeECCC-CccccCCCC-cccccccccccCcccccccccccc
Confidence 87766332 224566777777777777652 35677777776 456655331 1111 234
Q ss_pred ceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCCCCCccccccCccEEEEEecCcccccccccccceeEeec
Q 037947 654 EELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVWSWTGKYETSRTLKLKL 733 (780)
Q Consensus 654 ~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~l~~l~L~~ 733 (780)
+.|++++|.+.. ++ .+ ..+|+.|+++.|.+..+|.. ..+|+.|++..+.........+.++.|.++.
T Consensus 345 q~LdLS~N~Ls~-LP--------~l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~ 411 (788)
T PRK15387 345 QELSVSDNQLAS-LP--------TL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLPSELKELMVSG 411 (788)
T ss_pred ceEecCCCccCC-CC--------CC--CcccceehhhccccccCccc--ccccceEEecCCcccCCCCcccCCCEEEccC
Confidence 444444443211 00 00 12344555555555555543 2456667666554433333334555666655
Q ss_pred CCCccchhHHHHHhcccceeeccccccccccccccCCCcccCccCC
Q 037947 734 DNPMYLEHGIKMLLRRTEDLHLDKLNGFQNVLHELDGEGFPRLKHL 779 (780)
Q Consensus 734 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L~~L 779 (780)
+....+|. .+.+|+.|++++ ++++.+|..+ ..+++|+.|
T Consensus 412 N~LssIP~----l~~~L~~L~Ls~-NqLt~LP~sl--~~L~~L~~L 450 (788)
T PRK15387 412 NRLTSLPM----LPSGLLSLSVYR-NQLTRLPESL--IHLSSETTV 450 (788)
T ss_pred CcCCCCCc----chhhhhhhhhcc-CcccccChHH--hhccCCCeE
Confidence 44333332 234677777777 5677776544 345666554
No 20
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.27 E-value=1.3e-11 Score=124.98 Aligned_cols=201 Identities=16% Similarity=0.230 Sum_probs=107.1
Q ss_pred cCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHH----------
Q 037947 153 FESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNE---------- 222 (780)
Q Consensus 153 ~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~---------- 222 (780)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+...... + .++|+...+..+...+..-
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~-~-~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKG-Y-KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--E-E-CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcC-C-cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 789999999999999887788999999999999999999999874331 1 3444444333322211111
Q ss_pred ---HHHHcCCCc------CCCCCHHHHHHHHHHHhcc--CcEEEEEeCCCCcc-ccc---cccCCcccccccccCCCCCc
Q 037947 223 ---IAGALGLFL------GEHEDVSERAHLLRQRLKA--SRVLVILDDVWNRL-DLD---AVGIPYKNYQNEIKDDRRRC 287 (780)
Q Consensus 223 ---i~~~l~~~~------~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~-~~~---~l~~~~~~~~~~l~~~~~~s 287 (780)
+...+.... ............+.+.+.. ++.+||+||+.... ... .+...+..+...... ....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 157 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQNV 157 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCCc
Confidence 111111110 0111123444455555543 56999999997766 222 222222222222122 3344
Q ss_pred EEEEEecchhHHhh-------hcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHH
Q 037947 288 AMLLTSRRKDLLYN-------EMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITT 356 (780)
Q Consensus 288 ~iivTtr~~~v~~~-------~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 356 (780)
.+|++......... ..+....+.+++|+.+++++++...+.....-+.-.+..++|+..+||+|..|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 45555544433221 2233446999999999999999987643311122346679999999999998764
No 21
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.27 E-value=9.7e-10 Score=113.67 Aligned_cols=185 Identities=19% Similarity=0.211 Sum_probs=118.3
Q ss_pred cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh
Q 037947 169 DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRL 248 (780)
Q Consensus 169 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L 248 (780)
..+...+.|+|++|+||||+++.+++...... + ..+|+ +....+..+++..|+..++....... .......+.+.+
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~-~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~-~~~~~~~l~~~l 115 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQER-V-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRD-KAALLRELEDFL 115 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCCC-e-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHHH
Confidence 44556899999999999999999998865321 1 12233 33445778899999999887644322 333334444333
Q ss_pred -----ccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEecchhHHh--h-----h-cCCcceEEcCC
Q 037947 249 -----KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLLY--N-----E-MNSQKNFLINV 313 (780)
Q Consensus 249 -----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~~--~-----~-~~~~~~~~l~~ 313 (780)
.+++.++|+||++... .++.+.... ....+......|++|........ . . ......+++++
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~----~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~ 191 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLS----NFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGP 191 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHh----CcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCC
Confidence 5688999999998864 233332111 00012223345566655432110 0 0 01134678999
Q ss_pred CChHHHHHHHHHhhCCCC---CCCChhHHHHHHHHHhCCChHHHHHHHHHH
Q 037947 314 LSDQEAVQLFEKMSGVFE---GPLDFQNLAIKIARECGGLPVAITTVATAL 361 (780)
Q Consensus 314 L~~~~~~~Lf~~~~~~~~---~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 361 (780)
++.+|..+++...+.... ...-..+..+.|++.++|.|..|..++..+
T Consensus 192 l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 192 LDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 999999999987764221 222345889999999999999999998876
No 22
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.25 E-value=1.2e-10 Score=128.93 Aligned_cols=293 Identities=18% Similarity=0.193 Sum_probs=188.6
Q ss_pred ccccCCchHHHHHHHHHHc-cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC-CCHHHHHHHHHHHc
Q 037947 150 YEQFESRMPTFQDIMEALK-DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK-PDYKAIQNEIAGAL 227 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l 227 (780)
+...+-|. ++++.|. ..+.+++.|..|+|.||||++..+...... -..+.|.+++.. .++..+..-++..+
T Consensus 18 ~~~~v~R~----rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~yLi~al 90 (894)
T COG2909 18 PDNYVVRP----RLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSYLIAAL 90 (894)
T ss_pred cccccccH----HHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHHHHHHH
Confidence 34455565 4444554 347899999999999999999999873322 356899998865 56888888888888
Q ss_pred CCCcCCCC-------------CHHHHHHHHHHHhcc--CcEEEEEeCCCCccc--c-ccccCCcccccccccCCCCCcEE
Q 037947 228 GLFLGEHE-------------DVSERAHLLRQRLKA--SRVLVILDDVWNRLD--L-DAVGIPYKNYQNEIKDDRRRCAM 289 (780)
Q Consensus 228 ~~~~~~~~-------------~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~~--~-~~l~~~~~~~~~~l~~~~~~s~i 289 (780)
+.-.+... +.......+...+.. ++..+||||..-..+ . ..+...+ .....+-..
T Consensus 91 ~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl-------~~~P~~l~l 163 (894)
T COG2909 91 QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLL-------KHAPENLTL 163 (894)
T ss_pred HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHH-------HhCCCCeEE
Confidence 64333222 233455556665554 789999999754422 1 1222222 455668899
Q ss_pred EEEecchhHHh--hhcCCcceEEcC----CCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHHhC
Q 037947 290 LLTSRRKDLLY--NEMNSQKNFLIN----VLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATALRN 363 (780)
Q Consensus 290 ivTtr~~~v~~--~~~~~~~~~~l~----~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~ 363 (780)
|||||+..-.. ...-.....++. .|+.+|+.++|....+..-. +.-.+.+.+..+|.+-|+..++=.+++
T Consensus 164 vv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~ 239 (894)
T COG2909 164 VVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALRN 239 (894)
T ss_pred EEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHccC
Confidence 99999975320 000111223332 58999999999887643222 245788999999999999999988883
Q ss_pred C-ChhHHHHHHHHHhcCCCCCCCCchhhhhc-cccccccccCchhHHHHHHhhcccCCCCCcChhHHHHHHhccCcCCCc
Q 037947 364 K-SLFVWKDALLQLRSSNHRDISGLDSTVYS-SVKLSYNFLKSLEAQSLFLLCSLLNDGSRIPIDDLLRCAMGLDLFSDV 441 (780)
Q Consensus 364 ~-~~~~w~~~~~~l~~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~ 441 (780)
. +.+.-...+... .+.+.+ ...-.++.||++ +|..++.||+++. | -+.|+..-.
T Consensus 240 ~~~~~q~~~~LsG~-----------~~~l~dYL~eeVld~Lp~~-l~~FLl~~svl~~---f-~~eL~~~Lt-------- 295 (894)
T COG2909 240 NTSAEQSLRGLSGA-----------ASHLSDYLVEEVLDRLPPE-LRDFLLQTSVLSR---F-NDELCNALT-------- 295 (894)
T ss_pred CCcHHHHhhhccch-----------HHHHHHHHHHHHHhcCCHH-HHHHHHHHHhHHH---h-hHHHHHHHh--------
Confidence 3 433322222110 011111 122346789995 9999999999985 1 123332211
Q ss_pred ccHHHHHHHHHHHHHHHHhhccccc--CCCCCceeechhhHHHHHHHhhc
Q 037947 442 FSLEEARSRMHHLIDDLQASCLLLD--GDNKDDVKMHDVIHDIAVSTARD 489 (780)
Q Consensus 442 ~~~~~~~~~~~~~~~~L~~~~l~~~--~~~~~~~~mHdlv~d~~~~~~~~ 489 (780)
.++.+..++++|.+++++-. .+....|+.|.++.||.+.-...
T Consensus 296 -----g~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 296 -----GEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred -----cCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 12345567999999999852 35677999999999999877743
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.25 E-value=4.1e-13 Score=148.41 Aligned_cols=194 Identities=20% Similarity=0.253 Sum_probs=138.3
Q ss_pred CceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCc
Q 037947 512 DPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECC 591 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 591 (780)
..++|....|.+..+.....-.++++++++.|.+. .+| ++...+.+|..|+...|.++.+|..+....+|++|.+..|
T Consensus 220 ~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~n 297 (1081)
T KOG0618|consen 220 SLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYN 297 (1081)
T ss_pred chheeeeccCcceeeccccccccceeeecchhhhh-cch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhh
Confidence 46777777776665444445667888888888876 567 5667888888888888888888888888888888888888
Q ss_pred cCCC-cccccccCCCcEEEeecCCCCccChhhcCC--CCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccc
Q 037947 592 VLGD-VATVGALKKLVILSFRNSHIEQLPEEIGQL--TRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIE 668 (780)
Q Consensus 592 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l--~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 668 (780)
.++. |+....+++|++|+|..|++..+|..+-.- ..|+.|..+. +++...|.-.=..+..|+.|++.+|..
T Consensus 298 el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~-n~l~~lp~~~e~~~~~Lq~LylanN~L----- 371 (1081)
T KOG0618|consen 298 ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSS-NKLSTLPSYEENNHAALQELYLANNHL----- 371 (1081)
T ss_pred hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhh-ccccccccccchhhHHHHHHHHhcCcc-----
Confidence 8887 566667888899999888888888744322 2255666554 566655432223456677777777754
Q ss_pred cCCccchhhhcCCCCCCEEEeeccCCCCCCccc--cccCccEEEEEecC
Q 037947 669 GQNNASLAELNQLSRLTTLEMHILDAQVMPREL--FSVGLERYKIFLGD 715 (780)
Q Consensus 669 ~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~i~~~~ 715 (780)
...++.-+.+..+|+.|+|++|.+..+|... .++.|+.|.++++.
T Consensus 372 --td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk 418 (1081)
T KOG0618|consen 372 --TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK 418 (1081)
T ss_pred --cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch
Confidence 2334456777778888888888888888775 56667777776644
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.20 E-value=1.5e-09 Score=118.94 Aligned_cols=292 Identities=17% Similarity=0.107 Sum_probs=168.4
Q ss_pred ccccCCchHHHHHHHHHHc----cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHH
Q 037947 150 YEQFESRMPTFQDIMEALK----DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAG 225 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 225 (780)
+..++||++++++|...+. ......+.|+|++|+|||++++.++++.......-..+++++....+...++..|+.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~ 108 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIAR 108 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHH
Confidence 4568899999999998874 334566889999999999999999998766532334667777777788899999999
Q ss_pred HcCCC-cC-CCCCHHHHHHHHHHHhcc--CcEEEEEeCCCCcc---ccccccCCcccccccccCCCCC--cEEEEEecch
Q 037947 226 ALGLF-LG-EHEDVSERAHLLRQRLKA--SRVLVILDDVWNRL---DLDAVGIPYKNYQNEIKDDRRR--CAMLLTSRRK 296 (780)
Q Consensus 226 ~l~~~-~~-~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~---~~~~l~~~~~~~~~~l~~~~~~--s~iivTtr~~ 296 (780)
++... .. ...+.++....+.+.+.. ++.+||||+++... ..+.+...++ . .....+ ..+|.++...
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~----~-~~~~~~~~v~vI~i~~~~ 183 (394)
T PRK00411 109 QLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLR----A-HEEYPGARIGVIGISSDL 183 (394)
T ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHH----h-hhccCCCeEEEEEEECCc
Confidence 98752 21 122356677777777764 56899999997753 1111211110 0 111123 3366666654
Q ss_pred hHHhh------hcCCcceEEcCCCChHHHHHHHHHhhCCCC-CCCChhHHHHHHHHHh----CCChHHHHHHHHHHh---
Q 037947 297 DLLYN------EMNSQKNFLINVLSDQEAVQLFEKMSGVFE-GPLDFQNLAIKIAREC----GGLPVAITTVATALR--- 362 (780)
Q Consensus 297 ~v~~~------~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~~~~~~~~~~i~~~c----~GlPLai~~~~~~L~--- 362 (780)
.+... ..-....+.++|++.++..+++..++.... ...-..+..+.|++.+ |..+.|+.++-.+..
T Consensus 184 ~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 184 TFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred chhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 43211 111234678999999999999998764211 1111123444444444 556777776654321
Q ss_pred --CC---ChhHHHHHHHHHhcCCCCCCCCchhhhhccccccccccCchhHHHHHHhhc-ccCC-CCCcChhHHHHH--Hh
Q 037947 363 --NK---SLFVWKDALLQLRSSNHRDISGLDSTVYSSVKLSYNFLKSLEAQSLFLLCS-LLND-GSRIPIDDLLRC--AM 433 (780)
Q Consensus 363 --~~---~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s-~fp~-~~~i~~~~Li~~--W~ 433 (780)
+. +.+....+.+... .....-.+..||.+ .|..+..++ .... ...+....+... .+
T Consensus 264 ~~~~~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~-~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l 328 (394)
T PRK00411 264 REGSRKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLH-EKLLLRAIVRLLKKGGDEVTTGEVYEEYKEL 328 (394)
T ss_pred HcCCCCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHH-HHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 11 4556666655531 11123356788885 444333322 1221 123444444422 11
Q ss_pred ccCcCCCcccHHHHHHHHHHHHHHHHhhcccc
Q 037947 434 GLDLFSDVFSLEEARSRMHHLIDDLQASCLLL 465 (780)
Q Consensus 434 aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~ 465 (780)
++.+-...- ....+.++++.|...+++.
T Consensus 329 ~~~~~~~~~----~~~~~~~~l~~L~~~glI~ 356 (394)
T PRK00411 329 CEELGYEPR----THTRFYEYINKLDMLGIIN 356 (394)
T ss_pred HHHcCCCcC----cHHHHHHHHHHHHhcCCeE
Confidence 111100000 2234556788888888875
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.16 E-value=6.6e-12 Score=139.01 Aligned_cols=238 Identities=22% Similarity=0.268 Sum_probs=115.9
Q ss_pred ccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCC-cccccccCCCcEEEeecC
Q 037947 535 LKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGD-VATVGALKKLVILSFRNS 613 (780)
Q Consensus 535 L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~ 613 (780)
+..|++..|.+. ..|-.+..+.-+|++||+++|.+...|..|+.+.+|+.|+++.|.+.. |.++.++.+|++|+|.+|
T Consensus 23 ~~~ln~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n 101 (1081)
T KOG0618|consen 23 LQILNLRRNSLL-SRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN 101 (1081)
T ss_pred HHhhhccccccc-cCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc
Confidence 444455444433 223333333334666666666666666666666666666666665554 555556666666666666
Q ss_pred CCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCc-------------------ccccc-----
Q 037947 614 HIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTH-------------------WEIEG----- 669 (780)
Q Consensus 614 ~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~-------------------~~~~~----- 669 (780)
.+..+|.++..+++|++|+++. +.+...|+ .+..++.+..+..++|... ..+..
T Consensus 102 ~l~~lP~~~~~lknl~~LdlS~-N~f~~~Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l 179 (1081)
T KOG0618|consen 102 RLQSLPASISELKNLQYLDLSF-NHFGPIPL-VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNL 179 (1081)
T ss_pred hhhcCchhHHhhhcccccccch-hccCCCch-hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhh
Confidence 6666666666666666666655 44444432 2333333333333333100 00000
Q ss_pred -------CCccchhhhcCCCCCCEEEee--------------------ccCCCCCCccccccCccEEEEEecC---cccc
Q 037947 670 -------QNNASLAELNQLSRLTTLEMH--------------------ILDAQVMPRELFSVGLERYKIFLGD---VWSW 719 (780)
Q Consensus 670 -------~~~~~l~~l~~L~~L~~L~l~--------------------~~~~~~~~~~~~~~~L~~L~i~~~~---~~~~ 719 (780)
...-....+..+.+|+.|.+. .|.+..+-......+|+++++.... .++|
T Consensus 180 ~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~w 259 (1081)
T KOG0618|consen 180 THQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEW 259 (1081)
T ss_pred heeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHH
Confidence 000001222333333333333 2222211111134567777776533 4577
Q ss_pred cccccccceeEeecCCCccchhHHHHHhcccceeeccccccccccccccCCCcccCccCC
Q 037947 720 TGKYETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDKLNGFQNVLHELDGEGFPRLKHL 779 (780)
Q Consensus 720 ~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L~~L 779 (780)
.+.+.++..+....+.....+..+... .+|++|.... +.++.++.. .+++.+|++|
T Consensus 260 i~~~~nle~l~~n~N~l~~lp~ri~~~-~~L~~l~~~~-nel~yip~~--le~~~sL~tL 315 (1081)
T KOG0618|consen 260 IGACANLEALNANHNRLVALPLRISRI-TSLVSLSAAY-NELEYIPPF--LEGLKSLRTL 315 (1081)
T ss_pred HHhcccceEecccchhHHhhHHHHhhh-hhHHHHHhhh-hhhhhCCCc--ccccceeeee
Confidence 777777777776555444444444443 5666666665 455555532 3556666665
No 26
>PF05729 NACHT: NACHT domain
Probab=99.11 E-value=4.7e-10 Score=106.76 Aligned_cols=149 Identities=21% Similarity=0.311 Sum_probs=93.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCC----CCeEEEEEEccCCCHH---HHHHHHHHHcCCCcCCCCCHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKL----FDEVVMVVVSQKPDYK---AIQNEIAGALGLFLGEHEDVSERAHLLR 245 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~~~~i~~~l~~~~~~~~~~~~~~~~l~ 245 (780)
+++.|+|.+|+||||+++.++........ +...+|++.+...... .+...|..+....... ... .+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~---~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAP---IEE---LLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhh---hHH---HHH
Confidence 57999999999999999999998876644 3456677766544322 3444444443322111 111 222
Q ss_pred HHh-ccCcEEEEEeCCCCccccccc--cCCcccccccccC--CCCCcEEEEEecchhH--HhhhcCCcceEEcCCCChHH
Q 037947 246 QRL-KASRVLVILDDVWNRLDLDAV--GIPYKNYQNEIKD--DRRRCAMLLTSRRKDL--LYNEMNSQKNFLINVLSDQE 318 (780)
Q Consensus 246 ~~L-~~kr~LlVlDdv~~~~~~~~l--~~~~~~~~~~l~~--~~~~s~iivTtr~~~v--~~~~~~~~~~~~l~~L~~~~ 318 (780)
..+ +.+++++|+|++++...-... ...+..++..+.. ..++++++||+|.... ..........+++.+|++++
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHH
Confidence 222 468999999999777442111 0011111111122 2568999999999876 23334445689999999999
Q ss_pred HHHHHHHhh
Q 037947 319 AVQLFEKMS 327 (780)
Q Consensus 319 ~~~Lf~~~~ 327 (780)
..+++.+..
T Consensus 155 ~~~~~~~~f 163 (166)
T PF05729_consen 155 IKQYLRKYF 163 (166)
T ss_pred HHHHHHHHh
Confidence 999998765
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.09 E-value=7.3e-09 Score=112.26 Aligned_cols=298 Identities=15% Similarity=0.106 Sum_probs=166.2
Q ss_pred ccccCCchHHHHHHHHHHc----cCCccEEEEEcCCCChHHHHHHHHHHHHhccC-CC---CeEEEEEEccCCCHHHHHH
Q 037947 150 YEQFESRMPTFQDIMEALK----DDNINVIGIYGIGGVGKTTLVKQVARRVMEDK-LF---DEVVMVVVSQKPDYKAIQN 221 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F---~~~~wv~vs~~~~~~~~~~ 221 (780)
++.++||++++++|..+|. ......+.|+|++|+|||++++.+++...... .. -..+|+++....+...++.
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~ 93 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLV 93 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHH
Confidence 3468999999999999886 34456799999999999999999998764321 11 2356778777778889999
Q ss_pred HHHHHcC---CCcCC-CCCHHHHHHHHHHHhc--cCcEEEEEeCCCCcc-ccccccCCcccccccccCCCCCcEEEEEec
Q 037947 222 EIAGALG---LFLGE-HEDVSERAHLLRQRLK--ASRVLVILDDVWNRL-DLDAVGIPYKNYQNEIKDDRRRCAMLLTSR 294 (780)
Q Consensus 222 ~i~~~l~---~~~~~-~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~-~~~~l~~~~~~~~~~l~~~~~~s~iivTtr 294 (780)
.|++++. ...+. ..+..+....+.+.+. +++++||||+++... ..+.+...+..+............+|.+|.
T Consensus 94 ~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n 173 (365)
T TIGR02928 94 ELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISN 173 (365)
T ss_pred HHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEEC
Confidence 9999883 32221 1124555666666664 467899999997772 111111111000000000112334555554
Q ss_pred chhHHh----hhcC--CcceEEcCCCChHHHHHHHHHhhCC----CCCCCChhHHHHHHHHHhCCChHHHHHHH-HHH--
Q 037947 295 RKDLLY----NEMN--SQKNFLINVLSDQEAVQLFEKMSGV----FEGPLDFQNLAIKIARECGGLPVAITTVA-TAL-- 361 (780)
Q Consensus 295 ~~~v~~----~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~----~~~~~~~~~~~~~i~~~c~GlPLai~~~~-~~L-- 361 (780)
...... .... ....+.++|++.++..+++..++.. ..-.++..+....++....|.|-.+..+. .+.
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 443211 1011 1246889999999999999988741 11222333445566777779885443322 211
Q ss_pred h---CC---ChhHHHHHHHHHhcCCCCCCCCchhhhhccccccccccCchhHHHHHHhhccc--CCCCCcChhHHHHHHh
Q 037947 362 R---NK---SLFVWKDALLQLRSSNHRDISGLDSTVYSSVKLSYNFLKSLEAQSLFLLCSLL--NDGSRIPIDDLLRCAM 433 (780)
Q Consensus 362 ~---~~---~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~f--p~~~~i~~~~Li~~W~ 433 (780)
. +. +.+....+.+.+. .....-+...||.+ .+..+..++.. ..+..+....+...+-
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~~-~~~~l~ai~~~~~~~~~~~~~~~~~~~y~ 318 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPTH-SKLVLLAIANLAANDEDPFRTGEVYEVYK 318 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHH
Confidence 1 11 4445555544431 11122345678875 55444433311 1334455555555221
Q ss_pred --ccCcCCCcccHHHHHHHHHHHHHHHHhhccccc
Q 037947 434 --GLDLFSDVFSLEEARSRMHHLIDDLQASCLLLD 466 (780)
Q Consensus 434 --aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 466 (780)
++.+-... -....+.++++.|...|++..
T Consensus 319 ~~~~~~~~~~----~~~~~~~~~l~~l~~~gli~~ 349 (365)
T TIGR02928 319 EVCEDIGVDP----LTQRRISDLLNELDMLGLVEA 349 (365)
T ss_pred HHHHhcCCCC----CcHHHHHHHHHHHHhcCCeEE
Confidence 11110001 123455667777888888753
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.09 E-value=3.1e-10 Score=132.64 Aligned_cols=235 Identities=21% Similarity=0.284 Sum_probs=157.3
Q ss_pred CCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCC--CCCCCc-cccCCCCCCEEEccCcc-CCC-c
Q 037947 522 DIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFH--FPSLPS-TLGCLINLQTLSFECCV-LGD-V 596 (780)
Q Consensus 522 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--~~~lp~-~i~~l~~L~~L~L~~~~-~~~-~ 596 (780)
...+.|...+....|...+.+|.+. .++.. ...+.|+.|-+.+|. +..++. .+..+++|++|||++|. +.. |
T Consensus 512 ~~~~~~~~~~~~~~rr~s~~~~~~~-~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 512 GLSEIPQVKSWNSVRRMSLMNNKIE-HIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred CccccccccchhheeEEEEeccchh-hccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 3344566566677888888887765 34443 245689999999886 555544 47789999999999876 444 8
Q ss_pred ccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchh
Q 037947 597 ATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLA 676 (780)
Q Consensus 597 ~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 676 (780)
.+|+.|.+|++|+++++.+..||.++++|++|.+|++..+..+..+ ++.+..|++|++|.+.... .......+.
T Consensus 589 ~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~-----~~~~~~~l~ 662 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA-----LSNDKLLLK 662 (889)
T ss_pred hHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccc-----cccchhhHH
Confidence 8999999999999999999999999999999999999986666655 6767779999999986542 123445567
Q ss_pred hhcCCCCCCEEEeeccCC---C--------------------C---CCccc-cccCccEEEEEecCccc----ccccccc
Q 037947 677 ELNQLSRLTTLEMHILDA---Q--------------------V---MPREL-FSVGLERYKIFLGDVWS----WTGKYET 725 (780)
Q Consensus 677 ~l~~L~~L~~L~l~~~~~---~--------------------~---~~~~~-~~~~L~~L~i~~~~~~~----~~~~~~~ 725 (780)
++.+|.+|+.+.....+. . . .+... .+.+|++|.|..+...+ |......
T Consensus 663 el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~ 742 (889)
T KOG4658|consen 663 ELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIV 742 (889)
T ss_pred hhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccch
Confidence 777788787777654332 1 0 11111 56778888887766542 2111111
Q ss_pred c----ceeEeecCCCcc--chhHHHHHhcccceeecccccccccccc
Q 037947 726 S----RTLKLKLDNPMY--LEHGIKMLLRRTEDLHLDKLNGFQNVLH 766 (780)
Q Consensus 726 l----~~l~L~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 766 (780)
+ +..++...++.. .+.| ....|+|+.|.+.+|+-++++..
T Consensus 743 ~~~f~~l~~~~~~~~~~~r~l~~-~~f~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 743 LLCFPNLSKVSILNCHMLRDLTW-LLFAPHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred hhhHHHHHHHHhhccccccccch-hhccCcccEEEEecccccccCCC
Confidence 1 122222222221 1222 12357888888888777766543
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.07 E-value=4.2e-09 Score=110.93 Aligned_cols=274 Identities=14% Similarity=0.122 Sum_probs=149.7
Q ss_pred ccccCCchHHHHHHHHHHc-----cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHH
Q 037947 150 YEQFESRMPTFQDIMEALK-----DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~-----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 224 (780)
..+|+|++..++.+..++. ......+.++|++|+|||+||+.+++..... + ..+..+......++ ...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhH-HHHH
Confidence 3579999999999988886 2345678899999999999999999876432 2 12222211122222 2223
Q ss_pred HHcCCCc----CCCCC-HHHHHHHHHHHhccCcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhHH
Q 037947 225 GALGLFL----GEHED-VSERAHLLRQRLKASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL 299 (780)
Q Consensus 225 ~~l~~~~----~~~~~-~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~ 299 (780)
..++... ++-.. .......+...+.+.+..+|+|+..+...+... ..+.+-|.+||+...+.
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~-------------~~~~~li~~t~~~~~l~ 143 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLD-------------LPPFTLVGATTRAGMLT 143 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeec-------------CCCeEEEEecCCccccC
Confidence 3332211 00000 112334566666777777777776555444221 12244566677765443
Q ss_pred hhhcCC-cceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHHhCCChhHHHHHHHHHhc
Q 037947 300 YNEMNS-QKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATALRNKSLFVWKDALLQLRS 378 (780)
Q Consensus 300 ~~~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~~~~~~l~~ 378 (780)
...... ...+++++++.++..+++.+.+... ...--.+....|++.|+|.|-.+..++..+. .... ...
T Consensus 144 ~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~-~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~-------~~a~--~~~ 213 (305)
T TIGR00635 144 SPLRDRFGIILRLEFYTVEELAEIVSRSAGLL-NVEIEPEAALEIARRSRGTPRIANRLLRRVR-------DFAQ--VRG 213 (305)
T ss_pred HHHHhhcceEEEeCCCCHHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHhCCCcchHHHHHHHHH-------HHHH--HcC
Confidence 211112 3468999999999999999888632 2222346788999999999976655554321 1100 000
Q ss_pred CCCCCCCCchhhhhccccccccccCchhHHHHHH-hhcccCCCCCcChhHHHHHHhccCcCCCcccHHHHHHHHHHHHH-
Q 037947 379 SNHRDISGLDSTVYSSVKLSYNFLKSLEAQSLFL-LCSLLNDGSRIPIDDLLRCAMGLDLFSDVFSLEEARSRMHHLID- 456 (780)
Q Consensus 379 ~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~- 456 (780)
...-. ...-......+...|..++++ .+..+. ..+.++.+ .+..+.+.... | .+... ....++
T Consensus 214 ~~~it-~~~v~~~l~~l~~~~~~l~~~-~~~~L~al~~~~~~~-~~~~~~ia~~l---g-----~~~~~----~~~~~e~ 278 (305)
T TIGR00635 214 QKIIN-RDIALKALEMLMIDELGLDEI-DRKLLSVLIEQFQGG-PVGLKTLAAAL---G-----EDADT----IEDVYEP 278 (305)
T ss_pred CCCcC-HHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHhCCC-cccHHHHHHHh---C-----CCcch----HHHhhhH
Confidence 00000 001112222256667888875 555554 55666543 45544443221 1 11112 233456
Q ss_pred HHHhhcccccC
Q 037947 457 DLQASCLLLDG 467 (780)
Q Consensus 457 ~L~~~~l~~~~ 467 (780)
.|++.++++..
T Consensus 279 ~Li~~~li~~~ 289 (305)
T TIGR00635 279 YLLQIGFLQRT 289 (305)
T ss_pred HHHHcCCcccC
Confidence 58888988644
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=7.8e-12 Score=131.33 Aligned_cols=173 Identities=23% Similarity=0.356 Sum_probs=98.3
Q ss_pred EEEccCCCCccCCCcc-CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccC
Q 037947 515 AISLPCRDIQELPERL-ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVL 593 (780)
Q Consensus 515 ~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~ 593 (780)
...++.|.+.++|... .|-.|..+.+..|++. .+|..+ ..+..|.+|||+.|.++.+|..+|.|+ |+.|-+++|++
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcc
Confidence 3344445555555433 4445555555555554 344443 455666666666666666666665554 56666666665
Q ss_pred CC-cccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCc
Q 037947 594 GD-VATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNN 672 (780)
Q Consensus 594 ~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 672 (780)
+. |..|+.+.+|..||.+.|.+..+|..++.|.+|+.|.+.. +.+..+|++ ++.|+ |..|++++|.+.
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~Lp-Li~lDfScNkis-------- 224 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCSLP-LIRLDFSCNKIS-------- 224 (722)
T ss_pred ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhCCc-eeeeecccCcee--------
Confidence 55 5566655666666666666666666666666666666665 555556443 44443 566666655321
Q ss_pred cchhhhcCCCCCCEEEeeccCCCCCCccc
Q 037947 673 ASLAELNQLSRLTTLEMHILDAQVMPREL 701 (780)
Q Consensus 673 ~~l~~l~~L~~L~~L~l~~~~~~~~~~~~ 701 (780)
.....+.++++|+.|.|.+|.+...|..+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLqSPPAqI 253 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQSPPAQI 253 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCCCChHHH
Confidence 11245556666666666666666666655
No 31
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.05 E-value=8.9e-09 Score=109.17 Aligned_cols=276 Identities=12% Similarity=0.102 Sum_probs=149.8
Q ss_pred CCccccCCchHHHHHHHHHHc-----cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALK-----DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNE 222 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~-----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 222 (780)
....+|+|+++.++.+..++. ......+.|+|++|+||||+|+.+++..... + .++..+. ......+..
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~--~---~~~~~~~-~~~~~~l~~ 95 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN--I---RITSGPA-LEKPGDLAA 95 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC--e---EEEeccc-ccChHHHHH
Confidence 456789999999998877765 2345678999999999999999999987532 1 1222211 111222333
Q ss_pred HHHHcCCCc----CCCCC-HHHHHHHHHHHhccCcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchh
Q 037947 223 IAGALGLFL----GEHED-VSERAHLLRQRLKASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKD 297 (780)
Q Consensus 223 i~~~l~~~~----~~~~~-~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~ 297 (780)
++..+.... ++-.. .....+.+...+.+.+..+++|+..+...+.. ...+.+-|..|++...
T Consensus 96 ~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~-------------~l~~~~li~at~~~~~ 162 (328)
T PRK00080 96 ILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRL-------------DLPPFTLIGATTRAGL 162 (328)
T ss_pred HHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceee-------------cCCCceEEeecCCccc
Confidence 333332110 00000 01123334555556666666666544322211 0112344666666554
Q ss_pred HHhhhcC-CcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHHhCCChhHHHHHHHHH
Q 037947 298 LLYNEMN-SQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATALRNKSLFVWKDALLQL 376 (780)
Q Consensus 298 v~~~~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~~~~~~l 376 (780)
+...... ....+++++++.++..+++.+.+... ...--.+....|++.|+|.|-.+..+...+. .|....
T Consensus 163 l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~-~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~--- 233 (328)
T PRK00080 163 LTSPLRDRFGIVQRLEFYTVEELEKIVKRSARIL-GVEIDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK--- 233 (328)
T ss_pred CCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHc-CCCcCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc---
Confidence 4221111 13468999999999999999887632 2222346789999999999975555544322 111110
Q ss_pred hcCCCCCCCCchhhhhccccccccccCchhHHHHHH-hhcccCCCCCcChhHHHHHHhccCcCCCcccHHHHHHHHHHHH
Q 037947 377 RSSNHRDISGLDSTVYSSVKLSYNFLKSLEAQSLFL-LCSLLNDGSRIPIDDLLRCAMGLDLFSDVFSLEEARSRMHHLI 455 (780)
Q Consensus 377 ~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~ 455 (780)
...... ...-......+...+..|++. .+..+. ....|+.+ .+..+.+.... | .+.+.+++ .+
T Consensus 234 ~~~~I~--~~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~-~~~~~~~a~~l---g-----~~~~~~~~----~~ 297 (328)
T PRK00080 234 GDGVIT--KEIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGG-PVGLDTLAAAL---G-----EERDTIED----VY 297 (328)
T ss_pred CCCCCC--HHHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCC-ceeHHHHHHHH---C-----CCcchHHH----Hh
Confidence 000000 001123334456677788875 555554 66667754 46655553321 1 11122332 34
Q ss_pred H-HHHhhcccccC
Q 037947 456 D-DLQASCLLLDG 467 (780)
Q Consensus 456 ~-~L~~~~l~~~~ 467 (780)
+ .|++.+|++..
T Consensus 298 e~~Li~~~li~~~ 310 (328)
T PRK00080 298 EPYLIQQGFIQRT 310 (328)
T ss_pred hHHHHHcCCcccC
Confidence 5 67888888644
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.95 E-value=2.8e-11 Score=127.22 Aligned_cols=125 Identities=30% Similarity=0.397 Sum_probs=58.1
Q ss_pred CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCC-cccccccCCCcEEE
Q 037947 531 ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGD-VATVGALKKLVILS 609 (780)
Q Consensus 531 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~ 609 (780)
.+..|..|+++.|.++ .+|..+ + .--|++|.+++|+++.+|..|+.+.+|..|+.+.|.+.. |+.++.+.+|+.|+
T Consensus 119 ~L~~lt~l~ls~NqlS-~lp~~l-C-~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 119 NLEALTFLDLSSNQLS-HLPDGL-C-DLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred hhhHHHHhhhccchhh-cCChhh-h-cCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHH
Confidence 3344444444444443 233332 1 123455555555555555555544455555555554444 44455555555555
Q ss_pred eecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCC
Q 037947 610 FRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNS 661 (780)
Q Consensus 610 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 661 (780)
++.|++..+|.++..| .|..||++. |++..+|.. +.+|++|++|-+.+|
T Consensus 196 vrRn~l~~lp~El~~L-pLi~lDfSc-Nkis~iPv~-fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 196 VRRNHLEDLPEELCSL-PLIRLDFSC-NKISYLPVD-FRKMRHLQVLQLENN 244 (722)
T ss_pred HhhhhhhhCCHHHhCC-ceeeeeccc-Cceeecchh-hhhhhhheeeeeccC
Confidence 5555555555544422 344455442 444444332 445555555555444
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=1.6e-09 Score=101.56 Aligned_cols=128 Identities=25% Similarity=0.367 Sum_probs=40.0
Q ss_pred CCCccEEEecCCCCCCCCcccc-CCCCCCEEEccCccCCCcccccccCCCcEEEeecCCCCccChhhc-CCCCCCEEecC
Q 037947 557 VPSLQVLSLNGFHFPSLPSTLG-CLINLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQLPEEIG-QLTRLKLLDLS 634 (780)
Q Consensus 557 l~~Lr~L~l~~~~~~~lp~~i~-~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~-~l~~L~~L~l~ 634 (780)
...++.|+|++|.++.+. .++ .+.+|+.|++++|.++.++.+..+.+|++|++++|.|++++..+. .+++|++|+++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~ 96 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLS 96 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-T
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECc
Confidence 345566666666666542 344 466677777777777776667777777777777777777765443 46777777777
Q ss_pred CCCCCcccCc-cccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEee
Q 037947 635 NCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMH 690 (780)
Q Consensus 635 ~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~ 690 (780)
+ +++..+.. ..+..+++|+.|++.+|.+.. ....-..-+..+++|+.||-.
T Consensus 97 ~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~----~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 97 N-NKISDLNELEPLSSLPKLRVLSLEGNPVCE----KKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp T-S---SCCCCGGGGG-TT--EEE-TT-GGGG----STTHHHHHHHH-TT-SEETTE
T ss_pred C-CcCCChHHhHHHHcCCCcceeeccCCcccc----hhhHHHHHHHHcChhheeCCE
Confidence 6 45544311 224566677777777664321 111111224555666666543
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.88 E-value=1.1e-09 Score=102.70 Aligned_cols=127 Identities=28% Similarity=0.371 Sum_probs=52.7
Q ss_pred ccCCCCCCEEEccCccCCCccccc-ccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccce
Q 037947 577 LGCLINLQTLSFECCVLGDVATVG-ALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEE 655 (780)
Q Consensus 577 i~~l~~L~~L~L~~~~~~~~~~i~-~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 655 (780)
+.+...++.|+|++|.++.+..++ .+.+|+.|++++|.|+.++ ++..++.|+.|++++ +.++.+.+.....+++|++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH-TT--E
T ss_pred cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHhCCcCCE
Confidence 345567899999999999988888 6899999999999999987 588899999999998 8888885432246899999
Q ss_pred eeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCCCCCccc-----cccCccEEEE
Q 037947 656 LYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPREL-----FSVGLERYKI 711 (780)
Q Consensus 656 L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~i 711 (780)
|++++|.+. ....+..+..+++|+.|++..|.+...+..- .+|+|+.|+-
T Consensus 93 L~L~~N~I~------~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKIS------DLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---------SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCC------ChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 999999642 2234577888999999999999877655432 5677776654
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.84 E-value=3.7e-10 Score=113.89 Aligned_cols=90 Identities=29% Similarity=0.431 Sum_probs=58.3
Q ss_pred hHHHHhhcccCCceEEEccCCCCccCCCcc--CCCCccEEEeccCccccccCchhhcCCCCccEEEecC-CCCCCCCc-c
Q 037947 501 LKEVLEDLTQKDPIAISLPCRDIQELPERL--ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNG-FHFPSLPS-T 576 (780)
Q Consensus 501 ~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp~-~ 576 (780)
+.+.+.++|. +...|.+..|.+..+|+.. .+++||.|+|+.|.++..-| +.|.+++.|-.|-+.+ |+|+.+|+ .
T Consensus 58 L~eVP~~LP~-~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p-~AF~GL~~l~~Lvlyg~NkI~~l~k~~ 135 (498)
T KOG4237|consen 58 LTEVPANLPP-ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAP-DAFKGLASLLSLVLYGNNKITDLPKGA 135 (498)
T ss_pred cccCcccCCC-cceEEEeccCCcccCChhhccchhhhceecccccchhhcCh-HhhhhhHhhhHHHhhcCCchhhhhhhH
Confidence 3334444443 3677888888898888654 88899999999988874444 4457777766555554 77777775 3
Q ss_pred ccCCCCCCEEEccCcc
Q 037947 577 LGCLINLQTLSFECCV 592 (780)
Q Consensus 577 i~~l~~L~~L~L~~~~ 592 (780)
++.|..|+-|.+.-|.
T Consensus 136 F~gL~slqrLllNan~ 151 (498)
T KOG4237|consen 136 FGGLSSLQRLLLNANH 151 (498)
T ss_pred hhhHHHHHHHhcChhh
Confidence 4444445544444443
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.84 E-value=3.9e-10 Score=113.72 Aligned_cols=242 Identities=19% Similarity=0.228 Sum_probs=155.8
Q ss_pred CCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC-CccccCCCCCCEEEccC-ccCCCc-
Q 037947 520 CRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGCLINLQTLSFEC-CVLGDV- 596 (780)
Q Consensus 520 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~-~~~~~~- 596 (780)
...+.++|.... +....+.|..|.+. .+|+..|+.++.||.|||++|.|+.+ |..+..|..|-.|-+-+ |+|+.+
T Consensus 55 ~~GL~eVP~~LP-~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~ 132 (498)
T KOG4237|consen 55 GKGLTEVPANLP-PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP 132 (498)
T ss_pred CCCcccCcccCC-CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh
Confidence 334556664322 24456788888887 79999999999999999999999976 88999999988887666 889884
Q ss_pred -ccccccCCCcEEEeecCCCCccCh-hhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccc--ccc---
Q 037947 597 -ATVGALKKLVILSFRNSHIEQLPE-EIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWE--IEG--- 669 (780)
Q Consensus 597 -~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~--- 669 (780)
..+++|..|+.|.+.-|++.-++. .+..|++|+.|.+++ +.+..++.+.+..+.+++++.+.-|..... ++.
T Consensus 133 k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD-n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~ 211 (498)
T KOG4237|consen 133 KGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD-NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD 211 (498)
T ss_pred hhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc-hhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence 358899999999998888887654 678899999999998 788888777788888999888766542110 000
Q ss_pred CCccchhhhcCCCCCC----------------------EE----EeeccCCCCCCccc--cccCccEEEEEecCcc----
Q 037947 670 QNNASLAELNQLSRLT----------------------TL----EMHILDAQVMPREL--FSVGLERYKIFLGDVW---- 717 (780)
Q Consensus 670 ~~~~~l~~l~~L~~L~----------------------~L----~l~~~~~~~~~~~~--~~~~L~~L~i~~~~~~---- 717 (780)
.......+++..+... .+ .-..+....-|... .+++|++|++.++...
T Consensus 212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~ 291 (498)
T KOG4237|consen 212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED 291 (498)
T ss_pred HHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh
Confidence 0000001111111100 00 00000111111111 4666677777655433
Q ss_pred cccccccccceeEeecCCCccchhHHHHHhcccceeeccccccccccc
Q 037947 718 SWTGKYETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDKLNGFQNVL 765 (780)
Q Consensus 718 ~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 765 (780)
.|+.....++.|+|.-+.-......++..+..|+.|+|.+ +++..+.
T Consensus 292 ~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~ 338 (498)
T KOG4237|consen 292 GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYD-NQITTVA 338 (498)
T ss_pred hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecC-CeeEEEe
Confidence 4566666677777765544444555566667777777777 5655554
No 37
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.81 E-value=5.9e-08 Score=106.07 Aligned_cols=180 Identities=16% Similarity=0.153 Sum_probs=110.7
Q ss_pred CCccccCCchHHHHH---HHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQD---IMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~---l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 224 (780)
...++++|++..+.. +..++..+....+.++|++|+||||+|+.+++..... |+.++....-.+-.+.++
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~-------~~~l~a~~~~~~~ir~ii 81 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP-------FEALSAVTSGVKDLREVI 81 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------EEEEecccccHHHHHHHH
Confidence 445678898887666 7777777777889999999999999999999875322 233332211111112222
Q ss_pred HHcCCCcCCCCCHHHHHHHHHHH-hccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEE--Eecchh--
Q 037947 225 GALGLFLGEHEDVSERAHLLRQR-LKASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLL--TSRRKD-- 297 (780)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iiv--Ttr~~~-- 297 (780)
+ ..... ..+++.+|++|+++... +.+.+...+ ..+..+++ ||.+..
T Consensus 82 ~-----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l----------e~~~iilI~att~n~~~~ 134 (413)
T PRK13342 82 E-----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV----------EDGTITLIGATTENPSFE 134 (413)
T ss_pred H-----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHh----------hcCcEEEEEeCCCChhhh
Confidence 1 11111 24578899999998763 222232221 22444444 344332
Q ss_pred HHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCC-CC-CChhHHHHHHHHHhCCChHHHHHHHHHH
Q 037947 298 LLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFE-GP-LDFQNLAIKIARECGGLPVAITTVATAL 361 (780)
Q Consensus 298 v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~-~~-~~~~~~~~~i~~~c~GlPLai~~~~~~L 361 (780)
+..........+++.+++.++.+.++.+.+.... .. .-..+..+.|++.|+|.|..+..+....
T Consensus 135 l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~ 200 (413)
T PRK13342 135 VNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELA 200 (413)
T ss_pred ccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 1122234457899999999999999988664211 11 2335678889999999998765554443
No 38
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.79 E-value=3.3e-09 Score=112.77 Aligned_cols=198 Identities=21% Similarity=0.156 Sum_probs=107.5
Q ss_pred ceEEEccCCCCc-----cCCCcc-CCCCccEEEeccCcccc------ccCchhhcCCCCccEEEecCCCCC-CCCccccC
Q 037947 513 PIAISLPCRDIQ-----ELPERL-ECPKLKLFFLFSKKLSL------VIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGC 579 (780)
Q Consensus 513 ~~~l~l~~~~~~-----~~~~~~-~~~~L~~L~l~~~~~~~------~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~ 579 (780)
++.+.+.++.+. .++... ..++++.|.++++.... .++ ..+..+++|+.|++++|.+. ..+..+..
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLL-QGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHH-HHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 455555555542 122222 45556777776665441 111 22345677777777777765 33444444
Q ss_pred CCC---CCEEEccCccCCC------ccccccc-CCCcEEEeecCCCC-----ccChhhcCCCCCCEEecCCCCCCccc--
Q 037947 580 LIN---LQTLSFECCVLGD------VATVGAL-KKLVILSFRNSHIE-----QLPEEIGQLTRLKLLDLSNCSKLKSI-- 642 (780)
Q Consensus 580 l~~---L~~L~L~~~~~~~------~~~i~~l-~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~l~~~-- 642 (780)
+.+ |++|++++|.+.. ...+..+ ++|+.|++++|.+. .++..+..+++|++|++++| .++..
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~ 182 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGI 182 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHH
Confidence 444 7777777777653 1344555 77777777777666 34455666677777777773 34311
Q ss_pred --CccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCCCCC-----ccc--cccCccEEEEEe
Q 037947 643 --RPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMP-----REL--FSVGLERYKIFL 713 (780)
Q Consensus 643 --~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~-----~~~--~~~~L~~L~i~~ 713 (780)
.+..+..+++|++|++++|.+... ........+..+++|+.|+++.|...... ..+ ..+.|++|.+..
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~---~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDE---GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChH---HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence 011234456777777777643210 01112233556677777777776644310 111 125666766665
Q ss_pred cC
Q 037947 714 GD 715 (780)
Q Consensus 714 ~~ 715 (780)
+.
T Consensus 260 n~ 261 (319)
T cd00116 260 ND 261 (319)
T ss_pred CC
Confidence 54
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=8e-10 Score=107.35 Aligned_cols=136 Identities=16% Similarity=0.165 Sum_probs=114.9
Q ss_pred CCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCCcccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCC
Q 037947 557 VPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNC 636 (780)
Q Consensus 557 l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~ 636 (780)
...|..|||++|.++.+-.+..-++.++.|+++.|.+....++..|.+|+.||+++|.+.++-.+-.+|-|.++|.+++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~- 361 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ- 361 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-
Confidence 3678999999999998888888899999999999999998889999999999999998888877777889999999998
Q ss_pred CCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCCCCCccc
Q 037947 637 SKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPREL 701 (780)
Q Consensus 637 ~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~ 701 (780)
+.++.+ ..+++|-+|..|++.+|.+. .......+++|+.|+.+.+..|.+..++..-
T Consensus 362 N~iE~L--SGL~KLYSLvnLDl~~N~Ie------~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYR 418 (490)
T KOG1259|consen 362 NKIETL--SGLRKLYSLVNLDLSSNQIE------ELDEVNHIGNLPCLETLRLTGNPLAGSVDYR 418 (490)
T ss_pred hhHhhh--hhhHhhhhheeccccccchh------hHHHhcccccccHHHHHhhcCCCccccchHH
Confidence 778877 34889999999999988542 2233456888999999999998877766653
No 40
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.77 E-value=1.6e-07 Score=96.07 Aligned_cols=177 Identities=17% Similarity=0.195 Sum_probs=108.3
Q ss_pred ccccCCchHHH---HHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC-HHHHHHHHHH
Q 037947 150 YEQFESRMPTF---QDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD-YKAIQNEIAG 225 (780)
Q Consensus 150 ~~~~~gr~~~~---~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~ 225 (780)
.++++|.+..+ .-|..++....+.-..+||++|+||||||+.+....... | ..+|...+ ++++ +++++
T Consensus 23 lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~--f-----~~~sAv~~gvkdl-r~i~e 94 (436)
T COG2256 23 LDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA--F-----EALSAVTSGVKDL-REIIE 94 (436)
T ss_pred HHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc--e-----EEeccccccHHHH-HHHHH
Confidence 34455544322 223344556788888999999999999999999865433 3 34444332 3332 22221
Q ss_pred HcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEE--EecchhHH--
Q 037947 226 ALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLL--TSRRKDLL-- 299 (780)
Q Consensus 226 ~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iiv--Ttr~~~v~-- 299 (780)
.- -.....+++.+|++|.|..-. +-+.+. +.-..|.-|+| ||-++...
T Consensus 95 ~a----------------~~~~~~gr~tiLflDEIHRfnK~QQD~lL----------p~vE~G~iilIGATTENPsF~ln 148 (436)
T COG2256 95 EA----------------RKNRLLGRRTILFLDEIHRFNKAQQDALL----------PHVENGTIILIGATTENPSFELN 148 (436)
T ss_pred HH----------------HHHHhcCCceEEEEehhhhcChhhhhhhh----------hhhcCCeEEEEeccCCCCCeeec
Confidence 11 122234899999999996542 333232 44566776666 66665432
Q ss_pred hhhcCCcceEEcCCCChHHHHHHHHHhhCCCC------CCCChhHHHHHHHHHhCCChHHHHHHHHH
Q 037947 300 YNEMNSQKNFLINVLSDQEAVQLFEKMSGVFE------GPLDFQNLAIKIARECGGLPVAITTVATA 360 (780)
Q Consensus 300 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~------~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 360 (780)
........++.+++|+.++-.+++.+.+.... ...--++..+.+++.++|---+.-....+
T Consensus 149 ~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~ 215 (436)
T COG2256 149 PALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLEL 215 (436)
T ss_pred HHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHH
Confidence 23456678999999999999999998443111 11122457778999999987654444333
No 41
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.74 E-value=2.4e-07 Score=109.15 Aligned_cols=265 Identities=16% Similarity=0.199 Sum_probs=155.3
Q ss_pred cCCchHHHHHHHHHHc---cCCccEEEEEcCCCChHHHHHHHHHHHHhcc-CCCCeEEEEEEccCCC---HHHHHHHHHH
Q 037947 153 FESRMPTFQDIMEALK---DDNINVIGIYGIGGVGKTTLVKQVARRVMED-KLFDEVVMVVVSQKPD---YKAIQNEIAG 225 (780)
Q Consensus 153 ~~gr~~~~~~l~~~L~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~---~~~~~~~i~~ 225 (780)
++||+.+++.|...+. .....++.|.|.+|||||+|+++|......+ +.|-.-.+-....... ....+++++.
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~~ 81 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLMG 81 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHHH
Confidence 6899999999999887 4556799999999999999999999987655 2221111211222222 2233333333
Q ss_pred Hc-------------------CCCc--------------CC-C-------CCHHH-----HHHHHHHHhc-cCcEEEEEe
Q 037947 226 AL-------------------GLFL--------------GE-H-------EDVSE-----RAHLLRQRLK-ASRVLVILD 258 (780)
Q Consensus 226 ~l-------------------~~~~--------------~~-~-------~~~~~-----~~~~l~~~L~-~kr~LlVlD 258 (780)
++ +... +. . ..... ....+..... .++.++|+|
T Consensus 82 ~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~le 161 (849)
T COG3899 82 QLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVLE 161 (849)
T ss_pred HHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEEe
Confidence 33 1110 00 0 00011 1122233333 369999999
Q ss_pred CCC-Cccc-cccccCCccccccccc---CCCCCcEEEEEecch-hHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCC
Q 037947 259 DVW-NRLD-LDAVGIPYKNYQNEIK---DDRRRCAMLLTSRRK-DLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEG 332 (780)
Q Consensus 259 dv~-~~~~-~~~l~~~~~~~~~~l~---~~~~~s~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~ 332 (780)
|+. -+.. .+-+.... ..+. ......-.+.|.+.. ............+.|.||+..+...+.....+..
T Consensus 162 DlhWaD~~SL~lL~~lm----~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~-- 235 (849)
T COG3899 162 DLHWADSASLKLLQLLM----DRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCT-- 235 (849)
T ss_pred cccccChhHHHHHHHHH----HhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCc--
Confidence 994 3322 11111111 0000 001111223333333 1112234455789999999999999999988643
Q ss_pred CCChhHHHHHHHHHhCCChHHHHHHHHHHhCC-------ChhHHHHHHHHHhcCCCCCCCCchhhhhccccccccccCch
Q 037947 333 PLDFQNLAIKIARECGGLPVAITTVATALRNK-------SLFVWKDALLQLRSSNHRDISGLDSTVYSSVKLSYNFLKSL 405 (780)
Q Consensus 333 ~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~-------~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 405 (780)
.....+..+.|+++..|+|+.+..+-..+... +...|..-..++.... ..+.+.+.+..-.+.||..
T Consensus 236 ~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~------~~~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 236 KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILA------TTDAVVEFLAARLQKLPGT 309 (849)
T ss_pred ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCch------hhHHHHHHHHHHHhcCCHH
Confidence 22334788999999999999999999988743 3444544333322111 1223555677788999986
Q ss_pred hHHHHHHhhcccCCCCCcChhHHHHHH
Q 037947 406 EAQSLFLLCSLLNDGSRIPIDDLLRCA 432 (780)
Q Consensus 406 ~~k~cfl~~s~fp~~~~i~~~~Li~~W 432 (780)
.+..+...|++- -.|+.+.|...|
T Consensus 310 -t~~Vl~~AA~iG--~~F~l~~La~l~ 333 (849)
T COG3899 310 -TREVLKAAACIG--NRFDLDTLAALA 333 (849)
T ss_pred -HHHHHHHHHHhC--ccCCHHHHHHHH
Confidence 899998888887 456666665544
No 42
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.74 E-value=2.6e-09 Score=113.65 Aligned_cols=226 Identities=19% Similarity=0.114 Sum_probs=148.3
Q ss_pred CCCCccEEEeccCccccc----cCchhhcCCCCccEEEecCCCCCC-------CCccccCCCCCCEEEccCccCCC--cc
Q 037947 531 ECPKLKLFFLFSKKLSLV----IPDLFFEGVPSLQVLSLNGFHFPS-------LPSTLGCLINLQTLSFECCVLGD--VA 597 (780)
Q Consensus 531 ~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~Lr~L~l~~~~~~~-------lp~~i~~l~~L~~L~L~~~~~~~--~~ 597 (780)
.+.+|+.|.+.++.+... ++. .+...+.|+.|+++++.+.. ++..+..+++|++|++++|.+.. +.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~-~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALAS-ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHH-HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 566799999999987532 332 24567789999999887653 24456778899999999999864 44
Q ss_pred cccccCC---CcEEEeecCCCC-----ccChhhcCC-CCCCEEecCCCCCCccc----CccccCCCcccceeeccCCCCc
Q 037947 598 TVGALKK---LVILSFRNSHIE-----QLPEEIGQL-TRLKLLDLSNCSKLKSI----RPNVISNLPRLEELYMGNSFTH 664 (780)
Q Consensus 598 ~i~~l~~---L~~L~l~~~~l~-----~lp~~i~~l-~~L~~L~l~~~~~l~~~----~~~~l~~l~~L~~L~l~~~~~~ 664 (780)
.+..+.+ |++|++++|.+. .++..+..+ ++|+.|++++| .++.. ....+..+++|++|++++|.+.
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence 4444444 999999999876 344566777 89999999995 44411 1233566788999999988543
Q ss_pred cccccCCccchhhhcCCCCCCEEEeeccCCCCCC-----ccc-cccCccEEEEEecCcccc-----cc----ccccccee
Q 037947 665 WEIEGQNNASLAELNQLSRLTTLEMHILDAQVMP-----REL-FSVGLERYKIFLGDVWSW-----TG----KYETSRTL 729 (780)
Q Consensus 665 ~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~-----~~~-~~~~L~~L~i~~~~~~~~-----~~----~~~~l~~l 729 (780)
.. ........+..+++|+.|+++.|.+.... ..+ .+++|+.|++..+....+ .. ....++.+
T Consensus 179 ~~---~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L 255 (319)
T cd00116 179 DA---GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255 (319)
T ss_pred hH---HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEE
Confidence 21 11122345666789999999988764322 222 567899999987654321 11 12456666
Q ss_pred EeecCCCccc-hhHH---HHHhcccceeecccccccc
Q 037947 730 KLKLDNPMYL-EHGI---KMLLRRTEDLHLDKLNGFQ 762 (780)
Q Consensus 730 ~L~~~~~~~~-~~~~---~~~l~~L~~L~l~~~~~l~ 762 (780)
.+..+..... ...+ ...+++|++|++++ +.+.
T Consensus 256 ~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~-N~l~ 291 (319)
T cd00116 256 SLSCNDITDDGAKDLAEVLAEKESLLELDLRG-NKFG 291 (319)
T ss_pred EccCCCCCcHHHHHHHHHHhcCCCccEEECCC-CCCc
Confidence 6655432211 1112 22246899999988 4444
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=8.3e-09 Score=105.79 Aligned_cols=200 Identities=21% Similarity=0.171 Sum_probs=138.6
Q ss_pred CceEEEccCCCCccCCC---ccCCCCccEEEeccCcccc-ccCchhhcCCCCccEEEecCCCCCCCCc--cccCCCCCCE
Q 037947 512 DPIAISLPCRDIQELPE---RLECPKLKLFFLFSKKLSL-VIPDLFFEGVPSLQVLSLNGFHFPSLPS--TLGCLINLQT 585 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~lp~--~i~~l~~L~~ 585 (780)
..+.+++.++.....+. ...|++++.|+|+.|-+.. ..--.+...+++|+.|+|+.|.+...-+ .-..+.+|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 46778888877765552 3489999999999987652 1222456789999999999998763322 2236889999
Q ss_pred EEccCccCCC---cccccccCCCcEEEeecC-CCCccChhhcCCCCCCEEecCCCCCCcccC-ccccCCCcccceeeccC
Q 037947 586 LSFECCVLGD---VATVGALKKLVILSFRNS-HIEQLPEEIGQLTRLKLLDLSNCSKLKSIR-PNVISNLPRLEELYMGN 660 (780)
Q Consensus 586 L~L~~~~~~~---~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~ 660 (780)
|.|++|.++. ....-.+++|..|++..| .+..-......++.|+.|+|++ +++-.++ -..++.++.|..|+++.
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~-N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN-NNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccC-Ccccccccccccccccchhhhhccc
Confidence 9999999875 234457789999999888 3332233445678899999998 4444443 12367889999999887
Q ss_pred CCCccccccCCccchhhhcCCCCCCEEEeeccCCCCCCccc---cccCccEEEEEe
Q 037947 661 SFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPREL---FSVGLERYKIFL 713 (780)
Q Consensus 661 ~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~---~~~~L~~L~i~~ 713 (780)
|.+. .+......+......+++|+.|.+..|.+..++.-- .+++|+.|.+..
T Consensus 281 tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 281 TGIA-SIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred cCcc-hhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 7432 122233334455677788999999988886665543 566777777644
No 44
>PRK06893 DNA replication initiation factor; Validated
Probab=98.67 E-value=3.7e-07 Score=91.27 Aligned_cols=156 Identities=16% Similarity=0.148 Sum_probs=95.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhc
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLK 249 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 249 (780)
...+.+.++|++|+|||+|++.+++....+ ...+.|+++.... .... .+.+.+.
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~~~---------------------~~~~~~~ 90 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YFSP---------------------AVLENLE 90 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hhhH---------------------HHHhhcc
Confidence 344678999999999999999999987654 3345677664210 0000 1111222
Q ss_pred cCcEEEEEeCCCCc---ccccc-ccCCcccccccccCCCCCcEEEEEecch----------hHHhhhcCCcceEEcCCCC
Q 037947 250 ASRVLVILDDVWNR---LDLDA-VGIPYKNYQNEIKDDRRRCAMLLTSRRK----------DLLYNEMNSQKNFLINVLS 315 (780)
Q Consensus 250 ~kr~LlVlDdv~~~---~~~~~-l~~~~~~~~~~l~~~~~~s~iivTtr~~----------~v~~~~~~~~~~~~l~~L~ 315 (780)
+.-+|+|||+|.. ..|+. +...+ +.. ...|..+||+|.+. .+.. .+.....+++++++
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~----n~~--~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~pd 162 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLF----NRI--KEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLNDLT 162 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHH----HHH--HHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCCCC
Confidence 2348999999875 33432 11111 111 12345555544432 2222 23445689999999
Q ss_pred hHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHH
Q 037947 316 DQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATA 360 (780)
Q Consensus 316 ~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 360 (780)
.++.++++.+.+.... -.--+++.+-|++.+.|..-.+..+-..
T Consensus 163 ~e~~~~iL~~~a~~~~-l~l~~~v~~~L~~~~~~d~r~l~~~l~~ 206 (229)
T PRK06893 163 DEQKIIVLQRNAYQRG-IELSDEVANFLLKRLDRDMHTLFDALDL 206 (229)
T ss_pred HHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 9999999998886322 2333578888999998877666554433
No 45
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.66 E-value=5.2e-07 Score=96.71 Aligned_cols=203 Identities=17% Similarity=0.129 Sum_probs=113.9
Q ss_pred cCCccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCC-eEEEEEEccCCCH-HHHHH---
Q 037947 147 LRGYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFD-EVVMVVVSQKPDY-KAIQN--- 221 (780)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~-~~~~~--- 221 (780)
|.....++|++..++.+..++..+..+.+.++|++|+||||+|+.+.+..... .+. ..+.++++...+. .....
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDP 89 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCc
Confidence 34456789999999999999887777788999999999999999999876432 222 2344444331100 00000
Q ss_pred HHHHHcCCCcCCCCCHHHHHHHHHHHh------ccCcEEEEEeCCCCccc--cccccCCcccccccccCCCCCcEEEEEe
Q 037947 222 EIAGALGLFLGEHEDVSERAHLLRQRL------KASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRRRCAMLLTS 293 (780)
Q Consensus 222 ~i~~~l~~~~~~~~~~~~~~~~l~~~L------~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~~s~iivTt 293 (780)
.....++..........+..+.+.+.. .+.+-+||+||+..... ...+...+ ......+++|+||
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~l-------e~~~~~~~~Il~~ 162 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIM-------EQYSRTCRFIIAT 162 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHH-------HhccCCCeEEEEe
Confidence 000000000000000111222222111 13445899999965532 22222111 2233456788777
Q ss_pred cchh-HHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHH
Q 037947 294 RRKD-LLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVA 358 (780)
Q Consensus 294 r~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 358 (780)
.... +..........+++.+++.++....+...+..... .--.+..+.+++.++|.+-.+....
T Consensus 163 ~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~~~~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 163 RQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-DYDDDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred CChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5433 21212234467889999999999998886642221 1234678889999998876654433
No 46
>PF13173 AAA_14: AAA domain
Probab=98.66 E-value=6.4e-08 Score=87.27 Aligned_cols=120 Identities=20% Similarity=0.246 Sum_probs=81.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccC
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKAS 251 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 251 (780)
.+++.|.|+.|+||||++++++++.. ....+++++..+........ .+ ..+.+.+....+
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPG 61 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccC
Confidence 47899999999999999999998875 23556777766542211100 00 122333333447
Q ss_pred cEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhHHhh-----hcCCcceEEcCCCChHH
Q 037947 252 RVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLLYN-----EMNSQKNFLINVLSDQE 318 (780)
Q Consensus 252 r~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~~~-----~~~~~~~~~l~~L~~~~ 318 (780)
+.+++||++....+|......+ .+..+..+|++|+.+...... ..+....+++.||+..|
T Consensus 62 ~~~i~iDEiq~~~~~~~~lk~l-------~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWEDALKFL-------VDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred CcEEEEehhhhhccHHHHHHHH-------HHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 7899999999998887755444 555567899999988766421 12334578999999876
No 47
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.62 E-value=5.8e-07 Score=90.22 Aligned_cols=169 Identities=15% Similarity=0.140 Sum_probs=102.8
Q ss_pred chHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCC
Q 037947 156 RMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHE 235 (780)
Q Consensus 156 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 235 (780)
.+..++.+..++.......|.|+|++|+|||+||+.+++..... ....++++++.-.+.. .
T Consensus 22 ~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~~~---~-------------- 82 (226)
T TIGR03420 22 NAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQAD---P-------------- 82 (226)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHHhH---H--------------
Confidence 45567777777666667789999999999999999999886543 3345666654322100 0
Q ss_pred CHHHHHHHHHHHhccCcEEEEEeCCCCccc---cc-cccCCcccccccccCCCCCcEEEEEecchhHH--------hhhc
Q 037947 236 DVSERAHLLRQRLKASRVLVILDDVWNRLD---LD-AVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL--------YNEM 303 (780)
Q Consensus 236 ~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~---~~-~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~--------~~~~ 303 (780)
.+.+.+++ .-+|||||++.... |. .+...+ ..+ ...+..+|+||+..... ....
T Consensus 83 -------~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l----~~~--~~~~~~iIits~~~~~~~~~~~~~L~~r~ 148 (226)
T TIGR03420 83 -------EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLY----NRV--REAGGRLLIAGRAAPAQLPLRLPDLRTRL 148 (226)
T ss_pred -------HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHH----HHH--HHcCCeEEEECCCChHHCCcccHHHHHHH
Confidence 11122223 23899999976642 22 222211 000 12334788888754311 1112
Q ss_pred CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHH
Q 037947 304 NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVA 358 (780)
Q Consensus 304 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 358 (780)
.....+++++++.++...++...+... ...--.+..+.+++.+.|.|..+..+.
T Consensus 149 ~~~~~i~l~~l~~~e~~~~l~~~~~~~-~~~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 149 AWGLVFQLPPLSDEEKIAALQSRAARR-GLQLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred hcCeeEecCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhccCCHHHHHHHH
Confidence 224579999999999999988755311 112233667788888999888766554
No 48
>PRK04195 replication factor C large subunit; Provisional
Probab=98.62 E-value=2.7e-06 Score=94.97 Aligned_cols=187 Identities=18% Similarity=0.155 Sum_probs=115.0
Q ss_pred ccCCccccCCchHHHHHHHHHHcc----CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHH
Q 037947 146 HLRGYEQFESRMPTFQDIMEALKD----DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQN 221 (780)
Q Consensus 146 ~~~~~~~~~gr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 221 (780)
.|....+++|.++.++.+.+|+.. ...+.+.|+|++|+||||+|+.+++... |+ .+-++.+...+... ..
T Consensus 9 rP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~~-i~ 82 (482)
T PRK04195 9 RPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTADV-IE 82 (482)
T ss_pred CCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHH-HH
Confidence 345567789999999999999862 2267899999999999999999999763 32 33445554333332 22
Q ss_pred HHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc------cccccCCcccccccccCCCCCcEEEEEecc
Q 037947 222 EIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD------LDAVGIPYKNYQNEIKDDRRRCAMLLTSRR 295 (780)
Q Consensus 222 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~~l~~~~~~s~iivTtr~ 295 (780)
.++...... ......++-+||+|+++.... +..+...+ . ..+..||+|+.+
T Consensus 83 ~~i~~~~~~--------------~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l-------~--~~~~~iIli~n~ 139 (482)
T PRK04195 83 RVAGEAATS--------------GSLFGARRKLILLDEVDGIHGNEDRGGARAILELI-------K--KAKQPIILTAND 139 (482)
T ss_pred HHHHHhhcc--------------CcccCCCCeEEEEecCcccccccchhHHHHHHHHH-------H--cCCCCEEEeccC
Confidence 332221110 000113678999999977632 22221111 2 233456666644
Q ss_pred hh-HHh-hhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHHh
Q 037947 296 KD-LLY-NEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATALR 362 (780)
Q Consensus 296 ~~-v~~-~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~ 362 (780)
.. ... ........+++.+++.++....+.+.+..... .--.++...|++.++|..-.+......+.
T Consensus 140 ~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi-~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 140 PYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGI-ECDDEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred ccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 32 111 12234567999999999999888877642221 12246788999999998877665555544
No 49
>PLN03025 replication factor C subunit; Provisional
Probab=98.62 E-value=6.8e-07 Score=94.39 Aligned_cols=188 Identities=13% Similarity=0.057 Sum_probs=111.4
Q ss_pred ccCCccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCC-eEEEEEEccCCCHHHHHHHHH
Q 037947 146 HLRGYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFD-EVVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 146 ~~~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~ 224 (780)
.|....+++|.++.++.|..++..++.+-+.++|++|+||||+|..+++..... .|. .++-++.+...+.. ..++++
T Consensus 8 rP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~-~vr~~i 85 (319)
T PLN03025 8 RPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGID-VVRNKI 85 (319)
T ss_pred CCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHH-HHHHHH
Confidence 345567788999888888888877777778899999999999999999886432 122 22223333333322 222222
Q ss_pred HHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc--cccccCCcccccccccCCCCCcEEEEEecchh-HHhh
Q 037947 225 GALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKD-LLYN 301 (780)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~-v~~~ 301 (780)
+.+...... .-.++.-+++||+++.... .+.+...+ ......+++++++.... +...
T Consensus 86 ~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~l-------E~~~~~t~~il~~n~~~~i~~~ 145 (319)
T PLN03025 86 KMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTM-------EIYSNTTRFALACNTSSKIIEP 145 (319)
T ss_pred HHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHH-------hcccCCceEEEEeCCccccchh
Confidence 211100000 0013566999999977632 22222111 22234566777665432 2111
Q ss_pred hcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHH
Q 037947 302 EMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITT 356 (780)
Q Consensus 302 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 356 (780)
.......+++++++.++..+.+...+..... .--.+..+.|++.++|..-.+..
T Consensus 146 L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi-~i~~~~l~~i~~~~~gDlR~aln 199 (319)
T PLN03025 146 IQSRCAIVRFSRLSDQEILGRLMKVVEAEKV-PYVPEGLEAIIFTADGDMRQALN 199 (319)
T ss_pred HHHhhhcccCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2233467999999999999988887742221 11246778899999987754443
No 50
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=7.3e-06 Score=86.97 Aligned_cols=201 Identities=19% Similarity=0.176 Sum_probs=130.2
Q ss_pred ccCCchHHHHHHHHHHc----cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHc
Q 037947 152 QFESRMPTFQDIMEALK----DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGAL 227 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 227 (780)
.+.+|+++++++...|. +....-+.|+|..|+|||+.++.|.+.......=...++|++-...+...++..|++++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~ 97 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKL 97 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHc
Confidence 37799999999998876 33334499999999999999999999886653222279999999999999999999999
Q ss_pred CCCcCCCCCHHHHHHHHHHHhcc--CcEEEEEeCCCCccccc--cccCCcccccccccCCCCCcEEEE--EecchhHHh-
Q 037947 228 GLFLGEHEDVSERAHLLRQRLKA--SRVLVILDDVWNRLDLD--AVGIPYKNYQNEIKDDRRRCAMLL--TSRRKDLLY- 300 (780)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~~~~--~l~~~~~~~~~~l~~~~~~s~iiv--Ttr~~~v~~- 300 (780)
+..........+..+.+.+.+.. +.+++|||+++....-. .+...++ .....+++|++ .+.+.....
T Consensus 98 ~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r------~~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 98 GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLR------APGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHh------hccccceeEEEEEEeccHHHHHH
Confidence 74444334466777777777755 88999999997764332 1111110 11112455443 333333221
Q ss_pred -----hhcCCcceEEcCCCChHHHHHHHHHhhC----CCCCCCChhHHHHHHHHHhCC-ChHHHHHHH
Q 037947 301 -----NEMNSQKNFLINVLSDQEAVQLFEKMSG----VFEGPLDFQNLAIKIARECGG-LPVAITTVA 358 (780)
Q Consensus 301 -----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~ 358 (780)
.+.-....+..+|-+.+|-.+.+..++. ....++..-+++..++..-+| .=.||..+-
T Consensus 172 ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 172 LDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 0111223477899999999999998875 222333444444444555554 334544443
No 51
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.55 E-value=1.7e-06 Score=97.34 Aligned_cols=206 Identities=15% Similarity=0.107 Sum_probs=119.3
Q ss_pred ccccCCchHHHHHHHHHHc----cC-CccEEEEEcCCCChHHHHHHHHHHHHhcc---CCCC--eEEEEEEccCCCHHHH
Q 037947 150 YEQFESRMPTFQDIMEALK----DD-NINVIGIYGIGGVGKTTLVKQVARRVMED---KLFD--EVVMVVVSQKPDYKAI 219 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~----~~-~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~F~--~~~wv~vs~~~~~~~~ 219 (780)
++.+.||++++++|...|. .. ...++.|+|++|+|||++++.|.+..... .... .+++|++..-.+...+
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sI 833 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAA 833 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHH
Confidence 4567899999999988876 22 33577899999999999999998876431 1222 2567777766788889
Q ss_pred HHHHHHHcCCCcCCC-CCHHHHHHHHHHHhcc---CcEEEEEeCCCCccc--cccccCCcccccccccCCCCCcEEEE--
Q 037947 220 QNEIAGALGLFLGEH-EDVSERAHLLRQRLKA---SRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRRRCAMLL-- 291 (780)
Q Consensus 220 ~~~i~~~l~~~~~~~-~~~~~~~~~l~~~L~~---kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~~s~iiv-- 291 (780)
...|.+++....+.. ....+....+...+.. ...+||||+|+.... -+.+...++ .....+++|++
T Consensus 834 YqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR------~~~~s~SKLiLIG 907 (1164)
T PTZ00112 834 YQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFD------WPTKINSKLVLIA 907 (1164)
T ss_pred HHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHH------HhhccCCeEEEEE
Confidence 999998885433221 1233445555555422 345999999976532 111111111 01223455444
Q ss_pred EecchhHH----hh--hcCCcceEEcCCCChHHHHHHHHHhhCCC---CCCCChhHHHHHHHHHhCCChHHHHHHHHHH
Q 037947 292 TSRRKDLL----YN--EMNSQKNFLINVLSDQEAVQLFEKMSGVF---EGPLDFQNLAIKIARECGGLPVAITTVATAL 361 (780)
Q Consensus 292 Ttr~~~v~----~~--~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~---~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 361 (780)
+|...... .+ ..-....+..+|++.++-.+++..++... ..+..++-+|+.++..-|-.=.||.++-.+.
T Consensus 908 ISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred ecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 34332211 11 11112346779999999999999988632 1122222333333333334445555554444
No 52
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.55 E-value=1.1e-06 Score=100.50 Aligned_cols=185 Identities=14% Similarity=0.175 Sum_probs=113.7
Q ss_pred CCccccCCchHHHHHHHHHHccCCccE-EEEEcCCCChHHHHHHHHHHHHhccCC-------------------CCeEEE
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNINV-IGIYGIGGVGKTTLVKQVARRVMEDKL-------------------FDEVVM 207 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~v-v~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~w 207 (780)
.....++|.+..++.|.+++..+++.- +.++|+.|+||||+|+.+++....... |.-+++
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviE 92 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIE 92 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEE
Confidence 456778999999999999988777654 589999999999999999987643211 111122
Q ss_pred EEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCC
Q 037947 208 VVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRR 285 (780)
Q Consensus 208 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~ 285 (780)
+..+....+.++ ++|...+. ..-..+++-++|||++.... ..+.+...+ -....
T Consensus 93 idAas~~kVDdI-ReLie~v~----------------~~P~~gk~KViIIDEAh~LT~eAqNALLKtL-------EEPP~ 148 (944)
T PRK14949 93 VDAASRTKVDDT-RELLDNVQ----------------YRPSRGRFKVYLIDEVHMLSRSSFNALLKTL-------EEPPE 148 (944)
T ss_pred eccccccCHHHH-HHHHHHHH----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHH-------hccCC
Confidence 221111112211 22221110 01123577799999997662 333332222 33334
Q ss_pred CcEEEEEecc-hhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHH
Q 037947 286 RCAMLLTSRR-KDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTV 357 (780)
Q Consensus 286 ~s~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 357 (780)
..++|++|.+ ..+..........|++.+++.++..+.+.+.+... ....-.+..+.|++.++|.|--+..+
T Consensus 149 ~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E-gI~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 149 HVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE-QLPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5666665544 44433334456789999999999999998876432 12223467888999999998654444
No 53
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=2.8e-06 Score=91.23 Aligned_cols=194 Identities=14% Similarity=0.132 Sum_probs=110.6
Q ss_pred CCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
....+++|.+..++.+.+.+..++. ..+.++|+.|+||||+|+.+++........... .+..+.+. .++...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~---pc~~c~~c----~~~~~~ 85 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN---PCRKCIIC----KEIEKG 85 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCCCHHH----HHHhcC
Confidence 3456788999999999998887665 467899999999999999999876422111000 00000000 111110
Q ss_pred cCCCc-----CCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCccc--cccccCCcccccccccCCCCCcEEEEEec
Q 037947 227 LGLFL-----GEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRRRCAMLLTSR 294 (780)
Q Consensus 227 l~~~~-----~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~~s~iivTtr 294 (780)
..... ......++ .+.+.+.+ .+++-++|+|++..... ++.+...+ .......++|++|.
T Consensus 86 ~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~l-------Ee~~~~~~fIl~t~ 157 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTL-------EEPPQHIKFILATT 157 (363)
T ss_pred CCCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHH-------hcCCCCeEEEEEcC
Confidence 00000 00011111 22222222 23456999999977642 33333222 33445667777665
Q ss_pred chh-HHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHH
Q 037947 295 RKD-LLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTV 357 (780)
Q Consensus 295 ~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 357 (780)
+.. +.....+....+++.+++.++..+.+...+.... ..--.+.++.|++.++|.|-.+...
T Consensus 158 ~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g-~~i~~~al~~ia~~s~G~~R~al~~ 220 (363)
T PRK14961 158 DVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES-IDTDEYALKLIAYHAHGSMRDALNL 220 (363)
T ss_pred ChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 433 3222234457899999999999988887664221 1222356788999999988654433
No 54
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.54 E-value=2.4e-06 Score=90.82 Aligned_cols=193 Identities=13% Similarity=0.098 Sum_probs=113.4
Q ss_pred cccccccCCccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEE--ccCCCHHH
Q 037947 141 WTETLHLRGYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVV--SQKPDYKA 218 (780)
Q Consensus 141 ~~~~~~~~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~ 218 (780)
|.....|....+++|+++.++.+..++.....+.+.++|++|+||||+|+.+++...... +.. .++.+ +.......
T Consensus 7 w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~-~~i~~~~~~~~~~~~ 84 (319)
T PRK00440 7 WVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRE-NFLELNASDERGIDV 84 (319)
T ss_pred cchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-ccc-ceEEeccccccchHH
Confidence 333333445567889999999999999877777789999999999999999998864432 211 22222 22222221
Q ss_pred HHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc--cccccCCcccccccccCCCCCcEEEEEecch
Q 037947 219 IQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRRRCAMLLTSRRK 296 (780)
Q Consensus 219 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~ 296 (780)
..+.+..+....+ .-...+-++++|++..... ...+...+ ......+.+|+++...
T Consensus 85 -~~~~i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~l-------e~~~~~~~lIl~~~~~ 142 (319)
T PRK00440 85 -IRNKIKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTM-------EMYSQNTRFILSCNYS 142 (319)
T ss_pred -HHHHHHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHH-------hcCCCCCeEEEEeCCc
Confidence 1111111110000 0012356899999865522 22222222 2233456777766432
Q ss_pred h-HHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHH
Q 037947 297 D-LLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVA 358 (780)
Q Consensus 297 ~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 358 (780)
. ...........+++.+++.++....+.+.+..... .--.+..+.+++.++|.+--+....
T Consensus 143 ~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~-~i~~~al~~l~~~~~gd~r~~~~~l 204 (319)
T PRK00440 143 SKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGI-EITDDALEAIYYVSEGDMRKAINAL 204 (319)
T ss_pred cccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2 21111233457899999999999888887753221 2234678889999999887644433
No 55
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=2.8e-06 Score=89.50 Aligned_cols=177 Identities=12% Similarity=0.131 Sum_probs=114.8
Q ss_pred cccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHh----ccCCCCeEEEEE-EccCCCHHHHHHHHH
Q 037947 151 EQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVM----EDKLFDEVVMVV-VSQKPDYKAIQNEIA 224 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~-vs~~~~~~~~~~~i~ 224 (780)
.+++|.+..++.+..++..++. ..+.++|+.|+||||+|+.+++... ...|+|...|.. -+....++++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 4577988889999999986655 5678999999999999999998752 234666665654 2333344442 2333
Q ss_pred HHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCC--ccccccccCCcccccccccCCCCCcEEEEEecchhHH-hh
Q 037947 225 GALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWN--RLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL-YN 301 (780)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~-~~ 301 (780)
+.+.... ..+++-++|+|+++. ...++.+...+ .....++.+|++|.+.... ..
T Consensus 83 ~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~L-------Eepp~~t~~il~~~~~~~ll~T 139 (313)
T PRK05564 83 EEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTI-------EEPPKGVFIILLCENLEQILDT 139 (313)
T ss_pred HHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHh-------cCCCCCeEEEEEeCChHhCcHH
Confidence 3322110 123455677777643 34555554444 5556688888888665432 22
Q ss_pred hcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHH
Q 037947 302 EMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITT 356 (780)
Q Consensus 302 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 356 (780)
.......+++.+++.++....+.+.... ...+.++.++..++|.|.-+..
T Consensus 140 I~SRc~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 140 IKSRCQIYKLNRLSKEEIEKFISYKYND-----IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred HHhhceeeeCCCcCHHHHHHHHHHHhcC-----CCHHHHHHHHHHcCCCHHHHHH
Confidence 2345678999999999998888765421 1134577889999999875543
No 56
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=1.2e-08 Score=99.34 Aligned_cols=120 Identities=25% Similarity=0.342 Sum_probs=77.4
Q ss_pred ceEEEccCCCCccCCCcc-CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCc
Q 037947 513 PIAISLPCRDIQELPERL-ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECC 591 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 591 (780)
...+.++.|.+..+...+ -.|.+|.|+++.|.+.. +. + +..+++|..|||++|.++++-..-.+|-|.+.|.|.+|
T Consensus 286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~-n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQ-N-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhccccccchhhhhhhhhhccceeEEeccccceee-eh-h-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence 455666667666666555 45677777777776652 11 1 35566777777777766655444445666777777777
Q ss_pred cCCCcccccccCCCcEEEeecCCCCccC--hhhcCCCCCCEEecCC
Q 037947 592 VLGDVATVGALKKLVILSFRNSHIEQLP--EEIGQLTRLKLLDLSN 635 (780)
Q Consensus 592 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~ 635 (780)
.+..++.+++|.+|.+||+++|+|..+. .+||+|+.|+++.+.+
T Consensus 363 ~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 363 KIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred hHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 7777777777777777777777666553 3566666666666665
No 57
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.50 E-value=3.9e-07 Score=82.75 Aligned_cols=116 Identities=27% Similarity=0.357 Sum_probs=81.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhcc---CCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMED---KLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQR 247 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 247 (780)
+.+.+.|+|++|+|||++++.+.+..... ..-..++|+.+....+...+...|+.+++.......+..+..+.+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 35689999999999999999999986432 112457799999888999999999999998777744577778888888
Q ss_pred hccCcE-EEEEeCCCCc-c--ccccccCCcccccccccCCCCCcEEEEEecc
Q 037947 248 LKASRV-LVILDDVWNR-L--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSRR 295 (780)
Q Consensus 248 L~~kr~-LlVlDdv~~~-~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~ 295 (780)
+...+. +||+||+... . .++.+. .+.+ ..+.+||++.+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~--------~l~~-~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLR--------SLLN-ESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHH--------HHTC-SCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHH--------HHHh-CCCCeEEEEECh
Confidence 887655 9999999665 2 112221 1122 667788877665
No 58
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.50 E-value=1.1e-07 Score=104.13 Aligned_cols=172 Identities=27% Similarity=0.395 Sum_probs=82.9
Q ss_pred ceEEEccCCCCccCCCccCCC--CccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccC
Q 037947 513 PIAISLPCRDIQELPERLECP--KLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFEC 590 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 590 (780)
...+.+.++.+..++...... +|+.|++++|.+. .+|.. ...++.|+.|+++.|.++++|...+.+++|+.|++++
T Consensus 118 l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 118 LTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSP-LRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred eeEEecCCcccccCccccccchhhcccccccccchh-hhhhh-hhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence 445555555555555444332 5555555555543 22211 2345555555555555555555444555555555555
Q ss_pred ccCCCc-ccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCcccccc
Q 037947 591 CVLGDV-ATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEG 669 (780)
Q Consensus 591 ~~~~~~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 669 (780)
|.+..+ ..+..+.+|++|.+++|.+...|..+.++.++..|.+.+ +.+..+ +..++.+++|+.|++++|...
T Consensus 196 N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~-~~~~~~l~~l~~L~~s~n~i~----- 268 (394)
T COG4886 196 NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDL-PESIGNLSNLETLDLSNNQIS----- 268 (394)
T ss_pred CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeec-cchhccccccceecccccccc-----
Confidence 555552 223444445555555554444455555555555555443 333332 223455555555555554321
Q ss_pred CCccchhhhcCCCCCCEEEeeccCCCCC
Q 037947 670 QNNASLAELNQLSRLTTLEMHILDAQVM 697 (780)
Q Consensus 670 ~~~~~l~~l~~L~~L~~L~l~~~~~~~~ 697 (780)
.+..+..+.+|+.|+++.+.....
T Consensus 269 ----~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 269 ----SISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ----ccccccccCccCEEeccCcccccc
Confidence 011144455555555555544433
No 59
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.49 E-value=2.9e-06 Score=96.80 Aligned_cols=205 Identities=15% Similarity=0.066 Sum_probs=120.9
Q ss_pred CCccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCC---eEEEEEEccC---CCHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFD---EVVMVVVSQK---PDYKAIQN 221 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~---~~~~~~~~ 221 (780)
...+.++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.......+. ..-|+.+... .+...+..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 34567889999999988888767777899999999999999999988765433331 2345555421 12222211
Q ss_pred HH---------------HHHcCCCc----------------CCCC-CHHHHHHHHHHHhccCcEEEEEeCCCCc--cccc
Q 037947 222 EI---------------AGALGLFL----------------GEHE-DVSERAHLLRQRLKASRVLVILDDVWNR--LDLD 267 (780)
Q Consensus 222 ~i---------------~~~l~~~~----------------~~~~-~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~ 267 (780)
.+ +...+... ++.. -....+..+.+.++++++.++-|+.|.. ..|+
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~ 310 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPNVPK 310 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcccch
Confidence 11 11111100 0000 0234567888888888888887766654 3466
Q ss_pred cccCCcccccccccCCCCCcEEEE--EecchhH-HhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHH
Q 037947 268 AVGIPYKNYQNEIKDDRRRCAMLL--TSRRKDL-LYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIA 344 (780)
Q Consensus 268 ~l~~~~~~~~~~l~~~~~~s~iiv--Ttr~~~v-~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~ 344 (780)
.+...+ ....+..-|++ ||++... ..........+.+.+++.+|.++++.+.+..... .--.++.+.|.
T Consensus 311 ~ik~~~-------~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v-~ls~eal~~L~ 382 (615)
T TIGR02903 311 YIKKLF-------EEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINV-HLAAGVEELIA 382 (615)
T ss_pred hhhhhc-------ccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHH
Confidence 665444 33333334444 5554432 1112233457889999999999999987753211 11134555566
Q ss_pred HHhCCChHHHHHHHHH
Q 037947 345 RECGGLPVAITTVATA 360 (780)
Q Consensus 345 ~~c~GlPLai~~~~~~ 360 (780)
+.+..-+-|+..++.+
T Consensus 383 ~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 383 RYTIEGRKAVNILADV 398 (615)
T ss_pred HCCCcHHHHHHHHHHH
Confidence 6555445666655444
No 60
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.48 E-value=2.6e-06 Score=95.51 Aligned_cols=188 Identities=14% Similarity=0.162 Sum_probs=116.1
Q ss_pred CCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccCC-------------------CCeEEE
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDKL-------------------FDEVVM 207 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~w 207 (780)
....+++|.+..++.|.+++..+++ ..+.++|..|+||||+|+.+.+...-... |...++
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviE 92 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVE 92 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEE
Confidence 4567789999999999999987664 46689999999999999999887642211 111222
Q ss_pred EEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHH-HhccCcEEEEEeCCCCccc--cccccCCcccccccccCCC
Q 037947 208 VVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQ-RLKASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDR 284 (780)
Q Consensus 208 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~ 284 (780)
++.+....++++ +++++ .+.. -..++.-++|||+++.... ++.+...+ ....
T Consensus 93 IDAas~rgVDdI-ReLIe-----------------~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtL-------EEPP 147 (830)
T PRK07003 93 MDAASNRGVDEM-AALLE-----------------RAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTL-------EEPP 147 (830)
T ss_pred ecccccccHHHH-HHHHH-----------------HHHhccccCCceEEEEeChhhCCHHHHHHHHHHH-------HhcC
Confidence 222221111111 11111 1110 0124556899999987743 44443322 3444
Q ss_pred CCcEEEEEecchhH-HhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChH-HHHHHHHHH
Q 037947 285 RRCAMLLTSRRKDL-LYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPV-AITTVATAL 361 (780)
Q Consensus 285 ~~s~iivTtr~~~v-~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~L 361 (780)
.+.++|+||++..- ..........+++++++.++..+.+.+.+.... ..--.+..+.|++.++|..- |+..+-..+
T Consensus 148 ~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~Eg-I~id~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 148 PHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEER-IAFEPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred CCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 57787887776543 223345567899999999999999988775322 12234677889999998664 554433333
No 61
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=2e-06 Score=95.14 Aligned_cols=180 Identities=15% Similarity=0.186 Sum_probs=112.6
Q ss_pred CCccccCCchHHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhccC------------------------CC
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVMEDK------------------------LF 202 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------------~F 202 (780)
....+++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+.+...-.. .|
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~h 92 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRF 92 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCC
Confidence 45677899999999999999877754 568999999999999999988764210 01
Q ss_pred CeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHH-----hccCcEEEEEeCCCCcc--ccccccCCccc
Q 037947 203 DEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQR-----LKASRVLVILDDVWNRL--DLDAVGIPYKN 275 (780)
Q Consensus 203 ~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~~--~~~~l~~~~~~ 275 (780)
.-.++++.+.... .++.. .+.+. ..++.-++|||+++... ..+.+...+
T Consensus 93 pDviEIdAas~~g---------------------VDdIR-eLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTL-- 148 (700)
T PRK12323 93 VDYIEMDAASNRG---------------------VDEMA-QLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTL-- 148 (700)
T ss_pred CcceEecccccCC---------------------HHHHH-HHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhh--
Confidence 1112222211111 22211 12222 13466799999997763 333333222
Q ss_pred ccccccCCCCCcEEEEEec-chhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHH
Q 037947 276 YQNEIKDDRRRCAMLLTSR-RKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAI 354 (780)
Q Consensus 276 ~~~~l~~~~~~s~iivTtr-~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 354 (780)
.....++++|++|. ...+..........+++++++.++..+.+.+.+.... .....+..+.|++.++|.|.-.
T Consensus 149 -----EEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg-i~~d~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 149 -----EEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG-IAHEVNALRLLAQAAQGSMRDA 222 (700)
T ss_pred -----ccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 33344566555554 4445434445567899999999999998887764221 1222356688999999999755
Q ss_pred HHH
Q 037947 355 TTV 357 (780)
Q Consensus 355 ~~~ 357 (780)
..+
T Consensus 223 LsL 225 (700)
T PRK12323 223 LSL 225 (700)
T ss_pred HHH
Confidence 444
No 62
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.47 E-value=1.4e-07 Score=103.52 Aligned_cols=173 Identities=28% Similarity=0.303 Sum_probs=135.2
Q ss_pred cCCCCccEEEeccCccccccCchhhcCCC-CccEEEecCCCCCCCCccccCCCCCCEEEccCccCCC-cccccccCCCcE
Q 037947 530 LECPKLKLFFLFSKKLSLVIPDLFFEGVP-SLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGD-VATVGALKKLVI 607 (780)
Q Consensus 530 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~ 607 (780)
...+.+..|.+..|.+. .++... ..+. .|+.|+++.|.+..+|..++.+++|+.|+++.|.+.. ++..+.+.+|+.
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCcccc-cCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 35678889999888877 455533 3443 8999999999999998889999999999999999988 445559999999
Q ss_pred EEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEE
Q 037947 608 LSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTL 687 (780)
Q Consensus 608 L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L 687 (780)
|++++|.+..+|..+..+..|+.|.+++ +.....+ ..+.++.++..+.+.+|.... ....+..+.+++.|
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~-N~~~~~~-~~~~~~~~l~~l~l~~n~~~~--------~~~~~~~l~~l~~L 260 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSN-NSIIELL-SSLSNLKNLSGLELSNNKLED--------LPESIGNLSNLETL 260 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcC-Ccceecc-hhhhhcccccccccCCceeee--------ccchhcccccccee
Confidence 9999999999999888888899999988 4333342 337788888888877664311 13456777889999
Q ss_pred EeeccCCCCCCccccccCccEEEEEec
Q 037947 688 EMHILDAQVMPRELFSVGLERYKIFLG 714 (780)
Q Consensus 688 ~l~~~~~~~~~~~~~~~~L~~L~i~~~ 714 (780)
+++.|.+..++....+.+|+.|.+...
T Consensus 261 ~~s~n~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 261 DLSNNQISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ccccccccccccccccCccCEEeccCc
Confidence 999999888888447788888888654
No 63
>PTZ00202 tuzin; Provisional
Probab=98.45 E-value=1.2e-05 Score=84.31 Aligned_cols=167 Identities=18% Similarity=0.214 Sum_probs=104.3
Q ss_pred ccCCccccCCchHHHHHHHHHHcc---CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHH
Q 037947 146 HLRGYEQFESRMPTFQDIMEALKD---DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNE 222 (780)
Q Consensus 146 ~~~~~~~~~gr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 222 (780)
.+++..+|+||+.++..+...|.+ ...+++.|.|++|+|||||++.+..... + ..++++.. +..++++.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~-~qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----M-PAVFVDVR---GTEDTLRS 328 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----c-eEEEECCC---CHHHHHHH
Confidence 346677899999999999998863 2345899999999999999999986542 1 12222222 77999999
Q ss_pred HHHHcCCCcCCCCCHHHHHHHHHHHh-----c-cCcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecch
Q 037947 223 IAGALGLFLGEHEDVSERAHLLRQRL-----K-ASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRK 296 (780)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~~l~~~L-----~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~ 296 (780)
|+.+||...... ..++.+.|.+.+ . +++.+||+- +.+.+.+..+.... -.|.....-|+|++----+
T Consensus 329 LL~ALGV~p~~~--k~dLLrqIqeaLl~~~~e~GrtPVLII~-lreg~~l~rvyne~----v~la~drr~ch~v~evple 401 (550)
T PTZ00202 329 VVKALGVPNVEA--CGDLLDFISEACRRAKKMNGETPLLVLK-LREGSSLQRVYNEV----VALACDRRLCHVVIEVPLE 401 (550)
T ss_pred HHHHcCCCCccc--HHHHHHHHHHHHHHHHHhCCCCEEEEEE-ecCCCcHHHHHHHH----HHHHccchhheeeeeehHh
Confidence 999999733222 234445555544 2 566666664 22222221110000 0114455567777754433
Q ss_pred hHH--hhhcCCcceEEcCCCChHHHHHHHHHhh
Q 037947 297 DLL--YNEMNSQKNFLINVLSDQEAVQLFEKMS 327 (780)
Q Consensus 297 ~v~--~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 327 (780)
... ....+.-..|-+++++.++|.+...+..
T Consensus 402 slt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 402 SLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred hcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 321 1123444578999999999998876654
No 64
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.43 E-value=1.5e-06 Score=80.42 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=75.4
Q ss_pred CCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCC
Q 037947 154 ESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGE 233 (780)
Q Consensus 154 ~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 233 (780)
.|++..+..+...+..+..+.+.|+|++|+|||++++.+++..... -..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~------- 71 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF------- 71 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhh-------
Confidence 3788889999998887777899999999999999999999987532 2346666665543322221111100
Q ss_pred CCCHHHHHHHHHHHhccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEecchh
Q 037947 234 HEDVSERAHLLRQRLKASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKD 297 (780)
Q Consensus 234 ~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~ 297 (780)
............++.++|+||++... ....+...+....... ....+..||+||....
T Consensus 72 -----~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 -----LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-IDRENVRVIGATNRPL 131 (151)
T ss_pred -----hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-ccCCCeEEEEecCccc
Confidence 00111122234577899999998641 1111111111000000 0135778888887653
No 65
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.43 E-value=1.7e-05 Score=76.28 Aligned_cols=186 Identities=14% Similarity=0.161 Sum_probs=93.1
Q ss_pred cCCccccCCchHHHHHHHHHHc-----cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHH
Q 037947 147 LRGYEQFESRMPTFQDIMEALK-----DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQN 221 (780)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~L~-----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 221 (780)
|...++|+|.+..++.+.-++. ++...-+.+||++|+||||||..+++..... |. +.+.+.-....++ .
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~~---~~sg~~i~k~~dl-~ 93 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--FK---ITSGPAIEKAGDL-A 93 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----EE---EEECCC--SCHHH-H
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--eE---eccchhhhhHHHH-H
Confidence 3556789999888777544443 2456789999999999999999999987654 32 2222111111121 2
Q ss_pred HHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc--cccccCCcccc-cccccCC-----------CCCc
Q 037947 222 EIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD--LDAVGIPYKNY-QNEIKDD-----------RRRC 287 (780)
Q Consensus 222 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l~~~~~~~-~~~l~~~-----------~~~s 287 (780)
.++..+ +++-+|++|++..... -+.+...+... ...+... .+=+
T Consensus 94 ~il~~l----------------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FT 151 (233)
T PF05496_consen 94 AILTNL----------------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFT 151 (233)
T ss_dssp HHHHT------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----E
T ss_pred HHHHhc----------------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCce
Confidence 222222 1344666666644411 00000000000 0000011 1123
Q ss_pred EEEEEecchhHHhhhcCCcc-eEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHH
Q 037947 288 AMLLTSRRKDLLYNEMNSQK-NFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATAL 361 (780)
Q Consensus 288 ~iivTtr~~~v~~~~~~~~~-~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 361 (780)
-|=.|||...+......... ..+++..+.+|-.++..+.+..- .-+--++.+.+|++.|.|-|--..-+-+..
T Consensus 152 ligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l-~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 152 LIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARIL-NIEIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCT-T-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred EeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHh-CCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 45668888766432223333 45899999999999998877421 122234789999999999997555444433
No 66
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.43 E-value=6.1e-07 Score=86.94 Aligned_cols=74 Identities=19% Similarity=0.352 Sum_probs=43.6
Q ss_pred ccCCchHHHHHHHHHHc---cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCC-----CHHHHHHHH
Q 037947 152 QFESRMPTFQDIMEALK---DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKP-----DYKAIQNEI 223 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-----~~~~~~~~i 223 (780)
.|+||+++++++...+. ....+.+.|+|++|+|||+|++.++........+ .+.+.+.... +...+++++
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 78 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDSERNPYSPFRSALRQL 78 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETTTS-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEeccccchhhHHHHHHHHH
Confidence 38999999999999993 4556899999999999999999999988776323 3333333331 135555555
Q ss_pred HHHc
Q 037947 224 AGAL 227 (780)
Q Consensus 224 ~~~l 227 (780)
+.++
T Consensus 79 ~~~~ 82 (185)
T PF13191_consen 79 IDQL 82 (185)
T ss_dssp S---
T ss_pred HHHh
Confidence 5543
No 67
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.43 E-value=2e-06 Score=92.83 Aligned_cols=198 Identities=16% Similarity=0.173 Sum_probs=114.3
Q ss_pred cCCccccCCchHHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHH
Q 037947 147 LRGYEQFESRMPTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAG 225 (780)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 225 (780)
+....+++|.+..+..|..++..++.. .+.++|+.|+||||+|+.+++...-...... ..+..+.+...+...+..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~sC~~i~~g~~~ 90 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTSCLEITKGISS 90 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcHHHHHHccCCc
Confidence 345677899999999999998877764 5899999999999999999987543211100 011111111111111100
Q ss_pred HcC-CCcCCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEE-Eecch
Q 037947 226 ALG-LFLGEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLL-TSRRK 296 (780)
Q Consensus 226 ~l~-~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iiv-Ttr~~ 296 (780)
.+. ......... +.++.+.+.+ .++.-++|+|++.... .++.+...+ ........+|+ ||...
T Consensus 91 dviEIdaas~~gV-d~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtL-------EEPp~~viFILaTte~~ 162 (484)
T PRK14956 91 DVLEIDAASNRGI-ENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTL-------EEPPAHIVFILATTEFH 162 (484)
T ss_pred cceeechhhcccH-HHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHh-------hcCCCceEEEeecCChh
Confidence 000 000000001 1122222222 3466699999997663 344443333 22334455444 44444
Q ss_pred hHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHH
Q 037947 297 DLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITT 356 (780)
Q Consensus 297 ~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 356 (780)
.+..........|.+.+++.++..+.+.+.+.... ..--.+....|++.++|.+.-+..
T Consensus 163 kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg-i~~e~eAL~~Ia~~S~Gd~RdAL~ 221 (484)
T PRK14956 163 KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN-VQYDQEGLFWIAKKGDGSVRDMLS 221 (484)
T ss_pred hccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCChHHHHHH
Confidence 44444445567899999999999988888764322 222346788999999999864433
No 68
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=7.2e-06 Score=90.46 Aligned_cols=197 Identities=15% Similarity=0.146 Sum_probs=112.3
Q ss_pred cCCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccCCCCe-EEEEEEccCCCHHHHHHHHH
Q 037947 147 LRGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDE-VVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~ 224 (780)
|....+++|.+..+..|...+..++. ..+.++|+.|+||||+|+.+++..--...... -.+..+..+.+- ..+.
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C----~~i~ 92 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC----ISFN 92 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH----HHHh
Confidence 34566788999999988887776654 57889999999999999999987643211100 000000000000 0010
Q ss_pred HHcCCC-----cCCCCCHHHHHHHHHHH-----hccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEE-
Q 037947 225 GALGLF-----LGEHEDVSERAHLLRQR-----LKASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLL- 291 (780)
Q Consensus 225 ~~l~~~-----~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iiv- 291 (780)
...... .......++... +.+. +.+++-++|+|+++... .++.+...+ ......+.+|+
T Consensus 93 ~~~h~Dv~eidaas~~~vd~Ir~-iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~L-------Eepp~~~vfI~a 164 (507)
T PRK06645 93 NHNHPDIIEIDAASKTSVDDIRR-IIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTL-------EEPPPHIIFIFA 164 (507)
T ss_pred cCCCCcEEEeeccCCCCHHHHHH-HHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHH-------hhcCCCEEEEEE
Confidence 000000 000011111111 1111 23567799999998763 344443333 33344556554
Q ss_pred EecchhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHH
Q 037947 292 TSRRKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITT 356 (780)
Q Consensus 292 Ttr~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 356 (780)
||+...+..........+++.+++.++..+.+.+.+..... .--.+....|++.++|.+--+..
T Consensus 165 Tte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi-~ie~eAL~~Ia~~s~GslR~al~ 228 (507)
T PRK06645 165 TTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL-KTDIEALRIIAYKSEGSARDAVS 228 (507)
T ss_pred eCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 55555554333445578999999999999999988753221 22235677899999998754433
No 69
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.42 E-value=4.9e-06 Score=83.47 Aligned_cols=170 Identities=15% Similarity=0.180 Sum_probs=101.7
Q ss_pred HHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCH
Q 037947 158 PTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDV 237 (780)
Q Consensus 158 ~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~ 237 (780)
..+..+..+......+.+.|+|+.|+|||+|++.+++..... -..+.|+++...... .
T Consensus 31 ~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~~--------------------~ 88 (235)
T PRK08084 31 SLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAWF--------------------V 88 (235)
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhhh--------------------h
Confidence 344445455445556789999999999999999999876543 345667766431100 0
Q ss_pred HHHHHHHHHHhccCcEEEEEeCCCCc---ccccc-ccCCcccccccccCCCCCcEEEEEecchhHH--------hhhcCC
Q 037947 238 SERAHLLRQRLKASRVLVILDDVWNR---LDLDA-VGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL--------YNEMNS 305 (780)
Q Consensus 238 ~~~~~~l~~~L~~kr~LlVlDdv~~~---~~~~~-l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~--------~~~~~~ 305 (780)
.+ +.+.+.. --++++||+... ..|+. +...+ +.+.. ..+.++|+||+..... ...+..
T Consensus 89 ~~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~----n~~~e-~g~~~li~ts~~~p~~l~~~~~~L~SRl~~ 158 (235)
T PRK08084 89 PE----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLY----NRILE-SGRTRLLITGDRPPRQLNLGLPDLASRLDW 158 (235)
T ss_pred HH----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHH----HHHHH-cCCCeEEEeCCCChHHcCcccHHHHHHHhC
Confidence 11 1111211 238899999654 23432 11111 11111 2234788988865322 112344
Q ss_pred cceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHH
Q 037947 306 QKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATA 360 (780)
Q Consensus 306 ~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 360 (780)
..+++++++++++-.+++.+++... .-.--+++..-|++.+.|..-++..+-..
T Consensus 159 g~~~~l~~~~~~~~~~~l~~~a~~~-~~~l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 159 GQIYKLQPLSDEEKLQALQLRARLR-GFELPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred CceeeecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 5789999999999999998866432 22333578888999998877665544433
No 70
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=6.5e-06 Score=91.25 Aligned_cols=196 Identities=14% Similarity=0.126 Sum_probs=111.7
Q ss_pred CCccccCCchHHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
...++++|.+..++.|..++..++.. .+.++|++|+||||+|+.+++.....+.+...+|.+.+.. .+.......+..
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv~e 89 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDVLE 89 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCceEE
Confidence 34567899999999998888876654 5699999999999999999988753222222222221110 000000000000
Q ss_pred cCCCcCCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEecc-hhH
Q 037947 227 LGLFLGEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSRR-KDL 298 (780)
Q Consensus 227 l~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~-~~v 298 (780)
+.. ......+ .++.+.+.+ .+++-++|+|+++... .++.+...+ ......+.+|++|.. ..+
T Consensus 90 l~~--~~~~~vd-~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~L-------Eep~~~t~~Il~t~~~~kl 159 (504)
T PRK14963 90 IDA--ASNNSVE-DVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTL-------EEPPEHVIFILATTEPEKM 159 (504)
T ss_pred ecc--cccCCHH-HHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHH-------HhCCCCEEEEEEcCChhhC
Confidence 000 0001111 122222222 2466699999997653 233333222 333345555555543 333
Q ss_pred HhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHH
Q 037947 299 LYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAIT 355 (780)
Q Consensus 299 ~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 355 (780)
..........+++.+++.++..+.+.+.+..... ..-.+....|++.++|.+--+.
T Consensus 160 ~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi-~i~~~Al~~ia~~s~GdlR~al 215 (504)
T PRK14963 160 PPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGR-EAEPEALQLVARLADGAMRDAE 215 (504)
T ss_pred ChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 2223345678999999999999999887743221 1234678899999999986543
No 71
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.41 E-value=3.4e-07 Score=94.56 Aligned_cols=288 Identities=25% Similarity=0.261 Sum_probs=181.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCC-CeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLF-DEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA 250 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 250 (780)
.+.+.++|.|||||||++-.+.. .+.. | +.+.++...+-.+...+.-.+...++...... +.....+.....+
T Consensus 14 ~RlvtL~g~ggvgkttl~~~~a~-~~~~--~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~~ 87 (414)
T COG3903 14 LRLVTLTGAGGVGKTTLALQAAH-AASE--YADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIGD 87 (414)
T ss_pred hheeeeeccCccceehhhhhhHh-Hhhh--cccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHhh
Confidence 57899999999999999999988 4433 5 56778888877777777777777676554332 2344567777888
Q ss_pred CcEEEEEeCCCCccc-cccccCCcccccccccCCCCCcEEEEEecchhHHhhhcCCcceEEcCCCChH-HHHHHHHHhhC
Q 037947 251 SRVLVILDDVWNRLD-LDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLLYNEMNSQKNFLINVLSDQ-EAVQLFEKMSG 328 (780)
Q Consensus 251 kr~LlVlDdv~~~~~-~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~~~~~~~~~~~~l~~L~~~-~~~~Lf~~~~~ 328 (780)
+|.++|+||.....+ ...+...+ -.+.+.-.|+.|+|.... ......+.+++|+.- ++.++|...+.
T Consensus 88 rr~llvldncehl~~~~a~~i~al-------l~~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~ 156 (414)
T COG3903 88 RRALLVLDNCEHLLDACAALIVAL-------LGACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAV 156 (414)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHH-------HccchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHHHH
Confidence 999999999865522 11111112 334455678888887643 345567888888765 78999888774
Q ss_pred C----CCCCCChhHHHHHHHHHhCCChHHHHHHHHHHhCCChhHHHHHHH----HHhcCCCCCCCCchhhhhcccccccc
Q 037947 329 V----FEGPLDFQNLAIKIARECGGLPVAITTVATALRNKSLFVWKDALL----QLRSSNHRDISGLDSTVYSSVKLSYN 400 (780)
Q Consensus 329 ~----~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~~~~~----~l~~~~~~~~~~~~~~i~~~l~~sy~ 400 (780)
. -.-.........+|.++.+|.|++|...++..+.-...+-...++ .+... ......-.......+.+||.
T Consensus 157 ~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~ 235 (414)
T COG3903 157 LVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYA 235 (414)
T ss_pred HhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhH
Confidence 1 112233446788999999999999999999998765444333322 22222 11111234677889999999
Q ss_pred ccCchhHHHHHHhhcccCCCCCcChhHHHHHHhccCcCCCcccHHHHHHHHHHHHHHHHhhcccccC--CCCCceeechh
Q 037947 401 FLKSLEAQSLFLLCSLLNDGSRIPIDDLLRCAMGLDLFSDVFSLEEARSRMHHLIDDLQASCLLLDG--DNKDDVKMHDV 478 (780)
Q Consensus 401 ~L~~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~--~~~~~~~mHdl 478 (780)
-|... .+--|.-++.|...+.-. ...|.+-|--.. .+...++ .-+..+++.++..-. .....|+.-+-
T Consensus 236 lLtgw-e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~----~~~y~~~-~a~~ll~~kslv~a~~~~~~a~~Rl~eT 305 (414)
T COG3903 236 LLTGW-ERALFGRLAVFVGGFDLG----LALAVAAGADVD----VPRYLVL-LALTLLVDKSLVVALDLLGRARYRLLET 305 (414)
T ss_pred hhhhH-HHHHhcchhhhhhhhccc----HHHHHhcCCccc----cchHHHH-HHHHHHhhccchhhhhhhhHHHHHHHHH
Confidence 99986 788888889888655443 223443332100 0001111 112335556655321 22234666666
Q ss_pred hHHHHHHHh
Q 037947 479 IHDIAVSTA 487 (780)
Q Consensus 479 v~d~~~~~~ 487 (780)
+|.|+..+-
T Consensus 306 ~r~YalaeL 314 (414)
T COG3903 306 GRRYALAEL 314 (414)
T ss_pred HHHHHHHHH
Confidence 666666555
No 72
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.40 E-value=2.9e-06 Score=85.30 Aligned_cols=162 Identities=14% Similarity=0.136 Sum_probs=105.1
Q ss_pred HHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHH
Q 037947 163 IMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAH 242 (780)
Q Consensus 163 l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 242 (780)
|.+.+.+++++-+.+||++|+||||||+.+.+..+... ..||..|....-..-.+.|+++-.
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq-------------- 214 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQ-------------- 214 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHH--------------
Confidence 33445578899999999999999999999998776543 457777766544444455544321
Q ss_pred HHHHHhccCcEEEEEeCCCCc--cccccccCCcccccccccCCCCCcEEEE--EecchhHH--hhhcCCcceEEcCCCCh
Q 037947 243 LLRQRLKASRVLVILDDVWNR--LDLDAVGIPYKNYQNEIKDDRRRCAMLL--TSRRKDLL--YNEMNSQKNFLINVLSD 316 (780)
Q Consensus 243 ~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~l~~~~~~s~iiv--Ttr~~~v~--~~~~~~~~~~~l~~L~~ 316 (780)
=...+.++|.+|++|.|..- .+-+.+. +.-.+|.-++| ||-+.... ........++-|++|+.
T Consensus 215 -~~~~l~krkTilFiDEiHRFNksQQD~fL----------P~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~ 283 (554)
T KOG2028|consen 215 -NEKSLTKRKTILFIDEIHRFNKSQQDTFL----------PHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPV 283 (554)
T ss_pred -HHHhhhcceeEEEeHHhhhhhhhhhhccc----------ceeccCceEEEecccCCCccchhHHHHhccceeEeccCCH
Confidence 11234578999999999443 3322221 45566776666 67666432 23456677899999999
Q ss_pred HHHHHHHHHhhC---CC------CCCC---ChhHHHHHHHHHhCCChHH
Q 037947 317 QEAVQLFEKMSG---VF------EGPL---DFQNLAIKIARECGGLPVA 353 (780)
Q Consensus 317 ~~~~~Lf~~~~~---~~------~~~~---~~~~~~~~i~~~c~GlPLa 353 (780)
++-..++.+... +. ...+ -...+.+-++..|+|-.-+
T Consensus 284 n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 284 NAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred HHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 999998887432 11 1111 1124666777788887653
No 73
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=8.8e-06 Score=90.36 Aligned_cols=184 Identities=13% Similarity=0.171 Sum_probs=110.9
Q ss_pred CCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccC-------------------CCCeEEE
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDK-------------------LFDEVVM 207 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 207 (780)
....+++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++...-.. .|...++
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlie 92 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIE 92 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEE
Confidence 4456788999999999999887655 4578999999999999999998653211 1222233
Q ss_pred EEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHH-HhccCcEEEEEeCCCCcc--ccccccCCcccccccccCCC
Q 037947 208 VVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQ-RLKASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDR 284 (780)
Q Consensus 208 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~ 284 (780)
+.......++++ +++++ .+.. -..+++-++|+|++.... ..+.+...+ ....
T Consensus 93 idaas~~gvd~i-r~ii~-----------------~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~L-------Eepp 147 (546)
T PRK14957 93 IDAASRTGVEET-KEILD-----------------NIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTL-------EEPP 147 (546)
T ss_pred eecccccCHHHH-HHHHH-----------------HHHhhhhcCCcEEEEEechhhccHHHHHHHHHHH-------hcCC
Confidence 322222222221 11111 1111 123566799999996653 233333222 3334
Q ss_pred CCcEEEE-EecchhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChH-HHHHH
Q 037947 285 RRCAMLL-TSRRKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPV-AITTV 357 (780)
Q Consensus 285 ~~s~iiv-Ttr~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 357 (780)
..+.+|+ ||....+..........+++.+++.++..+.+.+.+.... ...-.+....|++.++|.+- |+..+
T Consensus 148 ~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg-i~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 148 EYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN-INSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4566554 4444444333345567899999999998888877554221 22234567789999999775 44444
No 74
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.40 E-value=6.9e-06 Score=91.29 Aligned_cols=185 Identities=14% Similarity=0.179 Sum_probs=113.1
Q ss_pred CCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccC-------------------CCCeEEE
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDK-------------------LFDEVVM 207 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 207 (780)
....+++|.+...+.|.+++..++. ..+.++|+.|+||||+|+.+++...-.. .|.-++.
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviE 91 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIE 91 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEE
Confidence 4567889999999999999987664 5779999999999999999988753211 1111122
Q ss_pred EEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCC
Q 037947 208 VVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRR 285 (780)
Q Consensus 208 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~ 285 (780)
++.+....++++ ++++.... ..-..+++-++|+|++.... ..+.+...+ .....
T Consensus 92 IDAAs~~~VddI-Reli~~~~----------------y~P~~gk~KV~IIDEVh~LS~~A~NALLKtL-------EEPP~ 147 (702)
T PRK14960 92 IDAASRTKVEDT-RELLDNVP----------------YAPTQGRFKVYLIDEVHMLSTHSFNALLKTL-------EEPPE 147 (702)
T ss_pred ecccccCCHHHH-HHHHHHHh----------------hhhhcCCcEEEEEechHhcCHHHHHHHHHHH-------hcCCC
Confidence 222211111111 11111110 00113566799999997663 233332222 33345
Q ss_pred CcEEEEEecchh-HHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHH
Q 037947 286 RCAMLLTSRRKD-LLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTV 357 (780)
Q Consensus 286 ~s~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 357 (780)
+.++|++|.+.. +..........+++.+++.++..+.+.+.+.... ..--.+....|++.++|.+..+..+
T Consensus 148 ~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg-I~id~eAL~~IA~~S~GdLRdALnL 219 (702)
T PRK14960 148 HVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ-IAADQDAIWQIAESAQGSLRDALSL 219 (702)
T ss_pred CcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 667777776543 3223345567899999999999998887764322 2223456788999999988655443
No 75
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.38 E-value=6.9e-07 Score=89.44 Aligned_cols=92 Identities=14% Similarity=0.132 Sum_probs=64.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC--CCHHHHHHHHHHHcCCCcCCCCCHH------HHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK--PDYKAIQNEIAGALGLFLGEHEDVS------ERAH 242 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~~------~~~~ 242 (780)
....++|+|++|+|||||++.+++..... +|+..+|+.+.+. .++.++++.+...+-....+.+... ....
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 45689999999999999999999988766 8999999997776 7899999999333222111111111 1112
Q ss_pred HHHHH-hccCcEEEEEeCCCCc
Q 037947 243 LLRQR-LKASRVLVILDDVWNR 263 (780)
Q Consensus 243 ~l~~~-L~~kr~LlVlDdv~~~ 263 (780)
..... -.+++.++++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 22222 2479999999998544
No 76
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.37 E-value=6.4e-06 Score=87.10 Aligned_cols=199 Identities=12% Similarity=0.119 Sum_probs=116.5
Q ss_pred ccCCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccCC--CCeEEEEEEccCCCHHHHHHH
Q 037947 146 HLRGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDKL--FDEVVMVVVSQKPDYKAIQNE 222 (780)
Q Consensus 146 ~~~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~~~~~ 222 (780)
+|.....++|.++..+.+...+..++. ..+.|+|+.|+||||+|..+.+..-.... +... .....+..-...+.
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~ 94 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQ 94 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHH
Confidence 345566789999999999999887665 46899999999999999999988643210 1111 00111111112233
Q ss_pred HHHHcCCC-------cCCC----CC--HHHHHHHHHHHhc-----cCcEEEEEeCCCCccc--cccccCCcccccccccC
Q 037947 223 IAGALGLF-------LGEH----ED--VSERAHLLRQRLK-----ASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKD 282 (780)
Q Consensus 223 i~~~l~~~-------~~~~----~~--~~~~~~~l~~~L~-----~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~ 282 (780)
|...-... .... .. ..+.++.+.+++. +++-++|+|+++.... .+.+...+ ..
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~L-------EE 167 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTL-------EE 167 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHH-------hc
Confidence 32221110 0000 00 1123345555553 4667999999976632 23332222 22
Q ss_pred CCCCcE-EEEEecchhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHH
Q 037947 283 DRRRCA-MLLTSRRKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTV 357 (780)
Q Consensus 283 ~~~~s~-iivTtr~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 357 (780)
...++. |++|++...+..........+++.+++.++..+++.+...... -..+....+++.++|.|.....+
T Consensus 168 pp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 168 PPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 223444 4445444444333344557899999999999999987432211 22456788999999999866543
No 77
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.37 E-value=1.4e-06 Score=90.73 Aligned_cols=99 Identities=14% Similarity=0.165 Sum_probs=67.3
Q ss_pred HHHHHc-cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCC--CHHHHHHHHHHHcCCCcCCCCCHHH
Q 037947 163 IMEALK-DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKP--DYKAIQNEIAGALGLFLGEHEDVSE 239 (780)
Q Consensus 163 l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~ 239 (780)
+++.+. =.......|+|++|+||||||+.||+..... +|+.++||.+.+.. .+.+++++|...+-....+.+ ...
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~-~~~ 236 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEP-AER 236 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCC-HHH
Confidence 344443 1344668999999999999999999998776 89999999999887 788888888643222222222 111
Q ss_pred HH------HHHHHH--hccCcEEEEEeCCCCc
Q 037947 240 RA------HLLRQR--LKASRVLVILDDVWNR 263 (780)
Q Consensus 240 ~~------~~l~~~--L~~kr~LlVlDdv~~~ 263 (780)
.. -...+. -.+++.+|++|++...
T Consensus 237 ~~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 237 HVQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 11 111222 2579999999998543
No 78
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=1.1e-05 Score=88.85 Aligned_cols=188 Identities=16% Similarity=0.203 Sum_probs=109.8
Q ss_pred CCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccCC-------------------CCeEEE
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDKL-------------------FDEVVM 207 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~w 207 (780)
....+++|.+.....|...+..++. ..+.++|++|+||||+|+.+++....... +.....
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~e 90 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIE 90 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEE
Confidence 4456789998888888888877766 45789999999999999999887542210 011222
Q ss_pred EEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCC
Q 037947 208 VVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRR 285 (780)
Q Consensus 208 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~ 285 (780)
++.+....+.++ ++|.+.... .-..+++-++|+|++.... ..+.+...+ .....
T Consensus 91 l~aa~~~gid~i-R~i~~~~~~----------------~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~L-------E~p~~ 146 (472)
T PRK14962 91 LDAASNRGIDEI-RKIRDAVGY----------------RPMEGKYKVYIIDEVHMLTKEAFNALLKTL-------EEPPS 146 (472)
T ss_pred EeCcccCCHHHH-HHHHHHHhh----------------ChhcCCeEEEEEEChHHhHHHHHHHHHHHH-------HhCCC
Confidence 222222222222 122211110 0022456799999986552 222332222 33233
Q ss_pred CcEEEEEecc-hhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCC-hHHHHHHHHH
Q 037947 286 RCAMLLTSRR-KDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGL-PVAITTVATA 360 (780)
Q Consensus 286 ~s~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~~~ 360 (780)
...+|++|.+ ..+..........+++.+++.++....+.+.+.... ..--.+....|++.++|. +.++..+-.+
T Consensus 147 ~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg-i~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 147 HVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG-IEIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred cEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4444444433 444333445567899999999999888888764221 122246778888888655 5666655543
No 79
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=8.7e-06 Score=89.06 Aligned_cols=183 Identities=13% Similarity=0.139 Sum_probs=113.5
Q ss_pred CCccccCCchHHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhcc-------------------CCCCeEEE
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVMED-------------------KLFDEVVM 207 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~w 207 (780)
....+++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++..--. ..+.-++.
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~e 89 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIE 89 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEE
Confidence 45677899999999888888877765 79999999999999999998753211 01122344
Q ss_pred EEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc--cccccCCcccccccccCCCC
Q 037947 208 VVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRR 285 (780)
Q Consensus 208 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~ 285 (780)
++.+...+++++ ++|++..... -..+++-++|+|++..... .+.+...+ ....+
T Consensus 90 idaas~~~vddI-R~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~L-------EePp~ 145 (491)
T PRK14964 90 IDAASNTSVDDI-KVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTL-------EEPAP 145 (491)
T ss_pred EecccCCCHHHH-HHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHH-------hCCCC
Confidence 444333333332 2222221100 0124566899999966532 33332222 33445
Q ss_pred CcEEEEEecc-hhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHH
Q 037947 286 RCAMLLTSRR-KDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAIT 355 (780)
Q Consensus 286 ~s~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 355 (780)
.+++|++|.. ..+..........+++.+++.++..+.+.+.+..... .--.+..+.|++.++|.+-.+.
T Consensus 146 ~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi-~i~~eAL~lIa~~s~GslR~al 215 (491)
T PRK14964 146 HVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI-EHDEESLKLIAENSSGSMRNAL 215 (491)
T ss_pred CeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 6666665543 4443334455678999999999999998887753221 2223567789999999886443
No 80
>PRK08727 hypothetical protein; Validated
Probab=98.36 E-value=9.2e-06 Score=81.40 Aligned_cols=175 Identities=11% Similarity=0.084 Sum_probs=100.2
Q ss_pred ccccCCch-HHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcC
Q 037947 150 YEQFESRM-PTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALG 228 (780)
Q Consensus 150 ~~~~~gr~-~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 228 (780)
.+.|++.. ..+..+.....+.....+.|+|++|+|||.|++.+++....+ ...+.|+++.+ ....+.
T Consensus 18 f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~~---- 85 (233)
T PRK08727 18 FDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRLR---- 85 (233)
T ss_pred hhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhHH----
Confidence 34455443 334433333333344579999999999999999999887654 23556666432 111111
Q ss_pred CCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhHHh--------
Q 037947 229 LFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLLY-------- 300 (780)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~~-------- 300 (780)
...+.+. +.-+||+||+.....+......+-.+.+.+ ...|..||+|++...-..
T Consensus 86 --------------~~~~~l~-~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~--~~~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 86 --------------DALEALE-GRSLVALDGLESIAGQREDEVALFDFHNRA--RAAGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred --------------HHHHHHh-cCCEEEEeCcccccCChHHHHHHHHHHHHH--HHcCCeEEEECCCChhhhhhhhHHHH
Confidence 1111221 335899999975532211000000111111 123567999998643210
Q ss_pred hhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHH
Q 037947 301 NEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAI 354 (780)
Q Consensus 301 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 354 (780)
..+.....+++++++.++-.+++.+++... .-.--+++...|++.++|..-.+
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~-~l~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRR-GLALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhCCCCHHHH
Confidence 112234689999999999999999877532 12223467788888888766655
No 81
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.35 E-value=4.9e-06 Score=95.79 Aligned_cols=175 Identities=19% Similarity=0.200 Sum_probs=102.8
Q ss_pred cCCccccCCchHHHH---HHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHH
Q 037947 147 LRGYEQFESRMPTFQ---DIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEI 223 (780)
Q Consensus 147 ~~~~~~~~gr~~~~~---~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 223 (780)
+...++|+|.+..+. .+...+..++...+.++|++|+||||+|+.+++.... +|. .++.+. ..+.+
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~--~f~---~lna~~-~~i~d----- 92 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA--HFS---SLNAVL-AGVKD----- 92 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC--cce---eehhhh-hhhHH-----
Confidence 345567889887764 4666666777778899999999999999999987542 231 111110 01111
Q ss_pred HHHcCCCcCCCCCHHHHHHHHHHHh--ccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEE--ecchh
Q 037947 224 AGALGLFLGEHEDVSERAHLLRQRL--KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLT--SRRKD 297 (780)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivT--tr~~~ 297 (780)
..+......+.+ .+++.+|||||++... +++.+... ...|+.++|+ |.+..
T Consensus 93 -------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~----------lE~g~IiLI~aTTenp~ 149 (725)
T PRK13341 93 -------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPW----------VENGTITLIGATTENPY 149 (725)
T ss_pred -------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHH----------hcCceEEEEEecCCChH
Confidence 111112222222 2467899999996542 33333221 1234445553 33321
Q ss_pred --HHhhhcCCcceEEcCCCChHHHHHHHHHhhCC------CCCCCChhHHHHHHHHHhCCChHHHH
Q 037947 298 --LLYNEMNSQKNFLINVLSDQEAVQLFEKMSGV------FEGPLDFQNLAIKIARECGGLPVAIT 355 (780)
Q Consensus 298 --v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~------~~~~~~~~~~~~~i~~~c~GlPLai~ 355 (780)
+..........+.+++++.++...++.+.+.. .....--.+..+.|++.+.|..-.+.
T Consensus 150 ~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 150 FEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLL 215 (725)
T ss_pred hhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHH
Confidence 21222233567999999999999999887641 11122234677888898988765433
No 82
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=7.9e-06 Score=92.13 Aligned_cols=195 Identities=14% Similarity=0.130 Sum_probs=111.9
Q ss_pred CCccccCCchHHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
....+++|.+..++.|...+..++.. .+.++|+.|+||||+|+.+++..--...+.. -.++.+ ...+.|...
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~---~pCg~C----~~C~~i~~g 85 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA---TPCGEC----DNCREIEQG 85 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC---CCCCCC----HHHHHHHcC
Confidence 45678899999999999998877664 4689999999999999999887543211100 000000 111111110
Q ss_pred cCC-----CcCCCCCHHHHHHHHHHH-----hccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEec
Q 037947 227 LGL-----FLGEHEDVSERAHLLRQR-----LKASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSR 294 (780)
Q Consensus 227 l~~-----~~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr 294 (780)
-.. ........++ .+.+.+. ..+++-++|||++.... ..+.+...+ .......++|++|.
T Consensus 86 ~~~D~ieidaas~~~Vdd-iR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtL-------EEPp~~v~FIL~Tt 157 (647)
T PRK07994 86 RFVDLIEIDAASRTKVED-TRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL-------EEPPEHVKFLLATT 157 (647)
T ss_pred CCCCceeecccccCCHHH-HHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHH-------HcCCCCeEEEEecC
Confidence 000 0000011111 1222222 23567799999997663 233332222 33334556555544
Q ss_pred c-hhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHH
Q 037947 295 R-KDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVA 358 (780)
Q Consensus 295 ~-~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 358 (780)
+ ..+..........|++.+++.++..+.+.+.+.... ...-.+..+.|++.++|.+--+..+.
T Consensus 158 ~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~-i~~e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 158 DPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ-IPFEPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred CccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 444333344567899999999999999987663221 12224567789999999887554443
No 83
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.33 E-value=1.2e-05 Score=77.85 Aligned_cols=160 Identities=19% Similarity=0.187 Sum_probs=94.3
Q ss_pred HHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhcc--------------------CCCCeEEEEEEc-cCCCHHHH
Q 037947 162 DIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMED--------------------KLFDEVVMVVVS-QKPDYKAI 219 (780)
Q Consensus 162 ~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs-~~~~~~~~ 219 (780)
.+.+.+..++. ..+.++|+.|+||||+|+.+.+..... .+.+. .++... ....++.+
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQV 81 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHHH
Confidence 45555656655 578999999999999999998886432 12222 122111 11122111
Q ss_pred HHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEecch-
Q 037947 220 QNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRK- 296 (780)
Q Consensus 220 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~- 296 (780)
+++.+.+... -..+.+-++|+||+.... ..+.+...+ ......+.+|++|++.
T Consensus 82 -~~i~~~~~~~----------------~~~~~~kviiide~~~l~~~~~~~Ll~~l-------e~~~~~~~~il~~~~~~ 137 (188)
T TIGR00678 82 -RELVEFLSRT----------------PQESGRRVVIIEDAERMNEAAANALLKTL-------EEPPPNTLFILITPSPE 137 (188)
T ss_pred -HHHHHHHccC----------------cccCCeEEEEEechhhhCHHHHHHHHHHh-------cCCCCCeEEEEEECChH
Confidence 1222221100 012456689999986653 233333222 3334456677766654
Q ss_pred hHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHH
Q 037947 297 DLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVA 353 (780)
Q Consensus 297 ~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 353 (780)
.+..........+++.+++.++..+.+.+. + . -.+.++.|++.++|.|..
T Consensus 138 ~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g--i----~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 138 KLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G--I----SEEAAELLLALAGGSPGA 187 (188)
T ss_pred hChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C--C----CHHHHHHHHHHcCCCccc
Confidence 222222344568999999999999998886 2 1 146788999999998853
No 84
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.32 E-value=1.9e-05 Score=85.27 Aligned_cols=185 Identities=14% Similarity=0.150 Sum_probs=110.5
Q ss_pred CCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccC--------------------CCCeEE
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDK--------------------LFDEVV 206 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~ 206 (780)
....+++|.+..++.+.+++..++. ..+.++|++|+||||+|+.+.+...... +++. .
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~-~ 89 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV-I 89 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE-E
Confidence 3456788999999999999986654 4678999999999999999988764221 2222 2
Q ss_pred EEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcc--ccccccCCcccccccccCCC
Q 037947 207 MVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDR 284 (780)
Q Consensus 207 wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~ 284 (780)
+++.+......+ .+++...+... -..+++-++|+|++.... ..+.+... +....
T Consensus 90 ~~~~~~~~~~~~-~~~l~~~~~~~----------------p~~~~~~vviidea~~l~~~~~~~Ll~~-------le~~~ 145 (355)
T TIGR02397 90 EIDAASNNGVDD-IREILDNVKYA----------------PSSGKYKVYIIDEVHMLSKSAFNALLKT-------LEEPP 145 (355)
T ss_pred EeeccccCCHHH-HHHHHHHHhcC----------------cccCCceEEEEeChhhcCHHHHHHHHHH-------HhCCc
Confidence 222221111111 12222221100 012345589999986552 22222222 23333
Q ss_pred CCcEEEEEecchh-HHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHH
Q 037947 285 RRCAMLLTSRRKD-LLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVA 358 (780)
Q Consensus 285 ~~s~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 358 (780)
..+.+|++|.+.. +..........+++++++.++..+.+...+..... .--.+.+..+++.++|.|..+....
T Consensus 146 ~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 146 EHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred cceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 4566666665543 22222334567899999999999888876642221 1224678889999999987665544
No 85
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=9.3e-06 Score=90.19 Aligned_cols=194 Identities=12% Similarity=0.102 Sum_probs=107.9
Q ss_pred cCCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHH
Q 037947 147 LRGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAG 225 (780)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 225 (780)
|....+++|++..++.+.+++..++. ..+.++|+.|+||||+|+.+++...-.. |.... .++.-...+.+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~~-~Cg~C~sCr~i~~ 84 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDGD-CCNSCSVCESINT 84 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCCC-CCcccHHHHHHHc
Confidence 34567789999999999999876654 4688999999999999999998764221 11100 0000011111111
Q ss_pred HcCCCc---C--CCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEe
Q 037947 226 ALGLFL---G--EHEDVSERAHLLRQRL-----KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTS 293 (780)
Q Consensus 226 ~l~~~~---~--~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTt 293 (780)
...... . .....++ .+.+.+.+ .+++-++|+|+++... .++.+...+ ......+.+|++|
T Consensus 85 ~~h~DiieIdaas~igVd~-IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtL-------EEPp~~tvfIL~T 156 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDE-IRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTL-------EEPPKHVVFIFAT 156 (605)
T ss_pred CCCCceEEeccccccCHHH-HHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHH-------HhCCCcEEEEEEC
Confidence 100000 0 0000111 11222211 2344579999986652 333332222 3233345555444
Q ss_pred -cchhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHH
Q 037947 294 -RRKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITT 356 (780)
Q Consensus 294 -r~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 356 (780)
....+..........+++.+++.++....+...+.... ..--.+.+..+++.++|.+--+..
T Consensus 157 t~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~keg-i~Is~eal~~La~lS~GdlR~Aln 219 (605)
T PRK05896 157 TEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEK-IKIEDNAIDKIADLADGSLRDGLS 219 (605)
T ss_pred CChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHHHH
Confidence 44444333344567899999999999988887664221 111235678899999997753333
No 86
>PLN03150 hypothetical protein; Provisional
Probab=98.31 E-value=1.5e-06 Score=100.05 Aligned_cols=102 Identities=20% Similarity=0.388 Sum_probs=66.7
Q ss_pred ccEEEecCCCCC-CCCccccCCCCCCEEEccCccCCC--cccccccCCCcEEEeecCCCC-ccChhhcCCCCCCEEecCC
Q 037947 560 LQVLSLNGFHFP-SLPSTLGCLINLQTLSFECCVLGD--VATVGALKKLVILSFRNSHIE-QLPEEIGQLTRLKLLDLSN 635 (780)
Q Consensus 560 Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~ 635 (780)
++.|+|++|.++ .+|..++.+++|++|+|++|.+.. |+.++.+.+|+.|+|++|.+. .+|..++.+++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566777777766 566777777777777777777654 456777777777777777665 5677777777777777777
Q ss_pred CCCCcccCccccCCC-cccceeeccCCC
Q 037947 636 CSKLKSIRPNVISNL-PRLEELYMGNSF 662 (780)
Q Consensus 636 ~~~l~~~~~~~l~~l-~~L~~L~l~~~~ 662 (780)
+.++...|..++.+ .++..+++.+|.
T Consensus 500 -N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 -NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred -CcccccCChHHhhccccCceEEecCCc
Confidence 34443333334442 355666666653
No 87
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=9.2e-06 Score=90.31 Aligned_cols=184 Identities=15% Similarity=0.168 Sum_probs=111.5
Q ss_pred CCccccCCchHHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhccCC-------------------CCeEEE
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVMEDKL-------------------FDEVVM 207 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~w 207 (780)
....+++|-+..++.|.+++..++.. .+.++|+.|+||||+|+.+++..--... |.-++.
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~e 92 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFE 92 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEE
Confidence 45677899999999999999877665 5789999999999999999987632211 112333
Q ss_pred EEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCC
Q 037947 208 VVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRR 285 (780)
Q Consensus 208 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~ 285 (780)
+..+....++++ +++++.+... -..++.-++|+|++.... ..+.+...+ .....
T Consensus 93 idaas~~~v~~i-R~l~~~~~~~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~L-------Eepp~ 148 (509)
T PRK14958 93 VDAASRTKVEDT-RELLDNIPYA----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTL-------EEPPS 148 (509)
T ss_pred EcccccCCHHHH-HHHHHHHhhc----------------cccCCcEEEEEEChHhcCHHHHHHHHHHH-------hccCC
Confidence 333222233322 2222221110 012466699999997763 233332222 33344
Q ss_pred CcEEEEEecc-hhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHH
Q 037947 286 RCAMLLTSRR-KDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITT 356 (780)
Q Consensus 286 ~s~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 356 (780)
.+++|++|.+ ..+..........+++++++.++..+.+.+.+..... .--.+....|++.++|.+.-+..
T Consensus 149 ~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi-~~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 149 HVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV-EFENAALDLLARAANGSVRDALS 219 (509)
T ss_pred CeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHH
Confidence 6666665544 3343333445567999999999988777666542221 12235667889999998865444
No 88
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.30 E-value=1.8e-05 Score=79.72 Aligned_cols=194 Identities=17% Similarity=0.140 Sum_probs=122.0
Q ss_pred HHHHHHHHHHc---cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCC----CeEEEEEEccCCCHHHHHHHHHHHcCCC
Q 037947 158 PTFQDIMEALK---DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLF----DEVVMVVVSQKPDYKAIQNEIAGALGLF 230 (780)
Q Consensus 158 ~~~~~l~~~L~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 230 (780)
+.++++.+.+. ..+.+-+.|+|.+|.|||++++++.+.......- -.++.|.....++...+...|+.+++..
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 34455555555 3345779999999999999999999876443111 1477788888999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHhcc-CcEEEEEeCCCCcccc-----ccccCCcccccccccCCCCCcEEEEEecchhHH----h
Q 037947 231 LGEHEDVSERAHLLRQRLKA-SRVLVILDDVWNRLDL-----DAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL----Y 300 (780)
Q Consensus 231 ~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~~~-----~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~----~ 300 (780)
.....+...........++. +--+||+|++.+.-.. ..+...+ ..|.+.-.=+-|.+-|+.-.-+ .
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~L----K~L~NeL~ipiV~vGt~~A~~al~~D~ 199 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNAL----KFLGNELQIPIVGVGTREAYRALRTDP 199 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHH----HHHhhccCCCeEEeccHHHHHHhccCH
Confidence 87776666666777777776 5569999999775221 1111111 1112222233455556554332 1
Q ss_pred hhcCCcceEEcCCCChHH-HHHHHHHhhC----CCCCCCChhHHHHHHHHHhCCChHHHH
Q 037947 301 NEMNSQKNFLINVLSDQE-AVQLFEKMSG----VFEGPLDFQNLAIKIARECGGLPVAIT 355 (780)
Q Consensus 301 ~~~~~~~~~~l~~L~~~~-~~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~GlPLai~ 355 (780)
........+.+++...++ ...|+..... .....-...++++.|...++|+.=-+.
T Consensus 200 QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 200 QLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred HHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 112334567777776544 4444433322 222233446899999999999875443
No 89
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=1.9e-05 Score=84.81 Aligned_cols=172 Identities=14% Similarity=0.134 Sum_probs=105.0
Q ss_pred ccccCCchHHHHHHHHHHccCC----------ccEEEEEcCCCChHHHHHHHHHHHHhccC-------------------
Q 037947 150 YEQFESRMPTFQDIMEALKDDN----------INVIGIYGIGGVGKTTLVKQVARRVMEDK------------------- 200 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~~~~----------~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------------------- 200 (780)
...++|-+..++.|..++..+. ...+.++|++|+|||++|..+++..--..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 3467899999999999987653 45688999999999999999987653221
Q ss_pred CCCeEEEEEEc-cCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCccc--cccccCC
Q 037947 201 LFDEVVMVVVS-QKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRLD--LDAVGIP 272 (780)
Q Consensus 201 ~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~--~~~l~~~ 272 (780)
|.| ..++... ....+++ ++.+.+.+ .+++-++|+|+++.... .+.+...
T Consensus 84 hpD-~~~i~~~~~~i~i~~----------------------iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~ 140 (394)
T PRK07940 84 HPD-VRVVAPEGLSIGVDE----------------------VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKA 140 (394)
T ss_pred CCC-EEEeccccccCCHHH----------------------HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHH
Confidence 111 1111111 1111111 22222322 24556889999976632 2222222
Q ss_pred cccccccccCCCCCcEEEEEecch-hHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 273 YKNYQNEIKDDRRRCAMLLTSRRK-DLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 273 ~~~~~~~l~~~~~~s~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
+ .....++.+|++|.+. .+..........+.+.+++.++..+.+....+. ..+.+..+++.++|.|
T Consensus 141 L-------Eep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~------~~~~a~~la~~s~G~~ 207 (394)
T PRK07940 141 V-------EEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV------DPETARRAARASQGHI 207 (394)
T ss_pred h-------hcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC------CHHHHHHHHHHcCCCH
Confidence 2 3334456666655554 443333455678999999999999888754321 1356778999999999
Q ss_pred HHHHHH
Q 037947 352 VAITTV 357 (780)
Q Consensus 352 Lai~~~ 357 (780)
.....+
T Consensus 208 ~~A~~l 213 (394)
T PRK07940 208 GRARRL 213 (394)
T ss_pred HHHHHH
Confidence 755433
No 90
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.29 E-value=1.5e-05 Score=89.61 Aligned_cols=185 Identities=11% Similarity=0.181 Sum_probs=110.2
Q ss_pred CCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccCC-------------------CCeEEE
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDKL-------------------FDEVVM 207 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~w 207 (780)
....+++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+.+...-... |.-.+.
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlE 92 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLE 92 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEE
Confidence 4567889999999999999987765 46799999999999999999886532211 111122
Q ss_pred EEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc--cccccCCcccccccccCCCC
Q 037947 208 VVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRR 285 (780)
Q Consensus 208 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~ 285 (780)
+..+....++. +++++.... . .-..+++-++|+|++..... .+.+. ..+.....
T Consensus 93 idaAs~~gVd~-IRelle~a~---------------~-~P~~gk~KVIIIDEad~Ls~~A~NALL-------KtLEEPp~ 148 (709)
T PRK08691 93 IDAASNTGIDN-IREVLENAQ---------------Y-APTAGKYKVYIIDEVHMLSKSAFNAML-------KTLEEPPE 148 (709)
T ss_pred EeccccCCHHH-HHHHHHHHH---------------h-hhhhCCcEEEEEECccccCHHHHHHHH-------HHHHhCCC
Confidence 22221111111 111111100 0 00124667999999966532 22222 22233334
Q ss_pred CcEEEEEecch-hHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHH
Q 037947 286 RCAMLLTSRRK-DLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTV 357 (780)
Q Consensus 286 ~s~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 357 (780)
.+++|++|.+. .+.....+....+++.+++.++..+.+.+.+.... ..--.+..+.|++.++|.+.-+..+
T Consensus 149 ~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEg-i~id~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 149 HVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEK-IAYEPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred CcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHHhCCCHHHHHHH
Confidence 56677666543 33222334456788999999999999887765322 1223467789999999998654443
No 91
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=2.8e-05 Score=82.80 Aligned_cols=196 Identities=14% Similarity=0.106 Sum_probs=113.8
Q ss_pred cCCccccCCchHHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEE------EEEEccCCCHHHH
Q 037947 147 LRGYEQFESRMPTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVV------MVVVSQKPDYKAI 219 (780)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~------wv~vs~~~~~~~~ 219 (780)
+.....++|.+...+.+.+.+..++.. .+.++|+.|+||+|+|..+.+..--+....... -..+...+ ..
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c---~~ 91 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDH---PV 91 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCC---hH
Confidence 344567899999999999998877754 688999999999999999998764322111000 00000000 01
Q ss_pred HHHHHHHcCCC-------cCCC-----CC-HHHHHHHHHHHhc-----cCcEEEEEeCCCCcc--ccccccCCccccccc
Q 037947 220 QNEIAGALGLF-------LGEH-----ED-VSERAHLLRQRLK-----ASRVLVILDDVWNRL--DLDAVGIPYKNYQNE 279 (780)
Q Consensus 220 ~~~i~~~l~~~-------~~~~-----~~-~~~~~~~l~~~L~-----~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~ 279 (780)
-+.|...-..+ ..+. .. ..+.++.+.+.+. +.+.++|+||++... ....+...+
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~L------ 165 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVL------ 165 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHH------
Confidence 11111111100 0000 00 1122444555543 466799999986653 222332222
Q ss_pred ccCCCCCcEEEEEecchh-HHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHH
Q 037947 280 IKDDRRRCAMLLTSRRKD-LLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTV 357 (780)
Q Consensus 280 l~~~~~~s~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 357 (780)
.....++.+|++|.+.. +..........+++.+++.++..+++....... ..+....+++.++|.|+....+
T Consensus 166 -Eepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-----~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 166 -EEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-----PDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred -hcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-----CHHHHHHHHHHcCCCHHHHHHH
Confidence 33334566666666653 333334556789999999999999998764221 1122367899999999866544
No 92
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=1.2e-07 Score=97.46 Aligned_cols=173 Identities=22% Similarity=0.224 Sum_probs=90.7
Q ss_pred ceEEEccCCCCccCCCc----cCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCC--CCCccccCCCCCCEE
Q 037947 513 PIAISLPCRDIQELPER----LECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFP--SLPSTLGCLINLQTL 586 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L 586 (780)
++.|.++.|-+.++... ..+++|+.|+++.|.+........-..+++|+.|.|+.|+++ +.-..+-.+++|..|
T Consensus 148 v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L 227 (505)
T KOG3207|consen 148 VRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVL 227 (505)
T ss_pred ceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHh
Confidence 56666655544333221 156677777777776543333322234566777777777765 222233346666777
Q ss_pred EccCccCCC--cccccccCCCcEEEeecCCCCccC--hhhcCCCCCCEEecCCCCCCccc--Ccc----ccCCCccccee
Q 037947 587 SFECCVLGD--VATVGALKKLVILSFRNSHIEQLP--EEIGQLTRLKLLDLSNCSKLKSI--RPN----VISNLPRLEEL 656 (780)
Q Consensus 587 ~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~--~~~----~l~~l~~L~~L 656 (780)
+|..|.... -.+...++.|+.|||++|++-.+| ..++.++.|+.|+++. +.+.++ |+. .....++|+.|
T Consensus 228 ~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L 306 (505)
T KOG3207|consen 228 YLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFPKLEYL 306 (505)
T ss_pred hhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc-cCcchhcCCCccchhhhcccccceee
Confidence 776663111 233445566677777777666555 3456667777776666 333332 111 01335667777
Q ss_pred eccCCCCccccccCCccchhhhcCCCCCCEEEeecc
Q 037947 657 YMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHIL 692 (780)
Q Consensus 657 ~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~ 692 (780)
++..|.+. ...++.++..+.+|+.|.+..|
T Consensus 307 ~i~~N~I~------~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 307 NISENNIR------DWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred ecccCccc------cccccchhhccchhhhhhcccc
Confidence 76666431 1223344444555555554444
No 93
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=2.1e-05 Score=88.64 Aligned_cols=197 Identities=12% Similarity=0.130 Sum_probs=111.3
Q ss_pred CCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccCCC--CeEEEEEEccCCCHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDKLF--DEVVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~i~ 224 (780)
....+++|-+..++.|.+++..++. ..+.++|+.|+||||+|+.+.+..--.... .+...-.++.+ ..-+.|.
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C----~~C~~i~ 88 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC----QACRDID 88 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc----HHHHHHH
Confidence 4567789999999999999887766 466899999999999999998765321100 00000001111 1111110
Q ss_pred HHcCC-----CcCCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEE
Q 037947 225 GALGL-----FLGEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLT 292 (780)
Q Consensus 225 ~~l~~-----~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivT 292 (780)
..-.. +.......++ ++.+.+.. .++.-++|||+++... ..+.+...+ ......+++|++
T Consensus 89 ~g~h~D~~eldaas~~~Vd~-iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtL-------EEPP~~~~fIL~ 160 (618)
T PRK14951 89 SGRFVDYTELDAASNRGVDE-VQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTL-------EEPPEYLKFVLA 160 (618)
T ss_pred cCCCCceeecCcccccCHHH-HHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhc-------ccCCCCeEEEEE
Confidence 00000 0000011111 12222222 2345589999997763 233333222 333445566655
Q ss_pred e-cchhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHH
Q 037947 293 S-RRKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTV 357 (780)
Q Consensus 293 t-r~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 357 (780)
| ....+..........+++++++.++..+.+.+.+..... .--.+....|++.++|.+--+..+
T Consensus 161 Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi-~ie~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV-PAEPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred ECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 5 444444334555678999999999999988877642221 222356788999999988655443
No 94
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.25 E-value=1e-05 Score=80.06 Aligned_cols=194 Identities=20% Similarity=0.200 Sum_probs=124.2
Q ss_pred cccccccCCccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEE-EEEEccCCCHHHH
Q 037947 141 WTETLHLRGYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVV-MVVVSQKPDYKAI 219 (780)
Q Consensus 141 ~~~~~~~~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~ 219 (780)
|+.-..+...++++|.+..+..+.+.+.....++...+|++|.|||+-|..+++..-..+.|.+.+ =.++|....+.-+
T Consensus 26 wteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvv 105 (346)
T KOG0989|consen 26 WTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVV 105 (346)
T ss_pred hHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccch
Confidence 444444556778899999999999999887889999999999999999999998876656676643 3455544332211
Q ss_pred HHHHHHHcCCCcCCCCCHHHHHHHHHHHh---c---cCc-EEEEEeCCCCc--cccccccCCcccccccccCCCCCcEEE
Q 037947 220 QNEIAGALGLFLGEHEDVSERAHLLRQRL---K---ASR-VLVILDDVWNR--LDLDAVGIPYKNYQNEIKDDRRRCAML 290 (780)
Q Consensus 220 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L---~---~kr-~LlVlDdv~~~--~~~~~l~~~~~~~~~~l~~~~~~s~ii 290 (780)
-..+ . +. .++.... . .++ -++|||+++.. +.|..+...+ -.....++.|
T Consensus 106 r~Ki-k----------~f----akl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~m-------E~~s~~trFi 163 (346)
T KOG0989|consen 106 REKI-K----------NF----AKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTM-------EDFSRTTRFI 163 (346)
T ss_pred hhhh-c----------CH----HHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHH-------hccccceEEE
Confidence 1100 0 00 0111111 0 133 48899999877 5687776554 4445667755
Q ss_pred EEecchhH-HhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHH
Q 037947 291 LTSRRKDL-LYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTV 357 (780)
Q Consensus 291 vTtr~~~v-~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 357 (780)
+.+..-.. ..........|+.++|.+++...-+...+.... .+--.+..+.|++.++|.---...+
T Consensus 164 LIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~-v~~d~~al~~I~~~S~GdLR~Ait~ 230 (346)
T KOG0989|consen 164 LICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEG-VDIDDDALKLIAKISDGDLRRAITT 230 (346)
T ss_pred EEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCcHHHHHHH
Confidence 55544333 222334456799999999999998888875322 2222367789999999865433333
No 95
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.23 E-value=1.7e-05 Score=86.27 Aligned_cols=200 Identities=15% Similarity=0.172 Sum_probs=111.1
Q ss_pred CCccccCCchHHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEE-EccCCCHHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVV-VSQKPDYKAIQNEIAG 225 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~ 225 (780)
.....++|.+..++.|..++.+++++ .+.++|+.|+||||+|..+++...-....+...|.. +...+..=..-+.+..
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~ 92 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDA 92 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhc
Confidence 34567889999999999988877665 488999999999999999998774322111111110 0000000000111111
Q ss_pred HcCCC-----cCCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEe
Q 037947 226 ALGLF-----LGEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTS 293 (780)
Q Consensus 226 ~l~~~-----~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTt 293 (780)
.-..+ .......+ .++.+.+.+ .+.+-++|+|++.... .++.+...+ ....+.+.+|++|
T Consensus 93 ~~~~n~~~~~~~~~~~id-~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~L-------Eep~~~t~~Il~t 164 (397)
T PRK14955 93 GTSLNISEFDAASNNSVD-DIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTL-------EEPPPHAIFIFAT 164 (397)
T ss_pred CCCCCeEeecccccCCHH-HHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHH-------hcCCCCeEEEEEe
Confidence 00000 00001012 222233333 2355689999987653 344433222 3344456665555
Q ss_pred -cchhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHH
Q 037947 294 -RRKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITT 356 (780)
Q Consensus 294 -r~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 356 (780)
+...+..........+++.+++.++..+.+...+... ...--.+.++.|++.++|.+--+..
T Consensus 165 ~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~-g~~i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 165 TELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAE-GISVDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred CChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHcCCCHHHHHH
Confidence 4344332223334679999999999988888766321 1122346788999999998864444
No 96
>PLN03150 hypothetical protein; Provisional
Probab=98.22 E-value=2.8e-06 Score=97.75 Aligned_cols=81 Identities=21% Similarity=0.384 Sum_probs=52.9
Q ss_pred CCEEEccCccCCC--cccccccCCCcEEEeecCCCC-ccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeecc
Q 037947 583 LQTLSFECCVLGD--VATVGALKKLVILSFRNSHIE-QLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMG 659 (780)
Q Consensus 583 L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 659 (780)
++.|+|++|.+.. |..++++.+|+.|+|++|.+. .+|..++.+++|+.|++++ +.+....|..++++++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~-N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSY-NSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCC-CCCCCCCchHHhcCCCCCEEECc
Confidence 5666777766654 556677777777777777664 5666677777777777776 45554445556677777777777
Q ss_pred CCCCc
Q 037947 660 NSFTH 664 (780)
Q Consensus 660 ~~~~~ 664 (780)
+|.+.
T Consensus 499 ~N~l~ 503 (623)
T PLN03150 499 GNSLS 503 (623)
T ss_pred CCccc
Confidence 66443
No 97
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.20 E-value=2.8e-05 Score=87.80 Aligned_cols=198 Identities=12% Similarity=0.137 Sum_probs=113.5
Q ss_pred CCccccCCchHHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhccCCCC--eEEEEEEccCCCHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVMEDKLFD--EVVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~~~~i~ 224 (780)
....+++|.+..++.|.+++..++.. .+.++|+.|+||||+|+.+++...-..... ...+-.++.+ .--+.|.
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c----~~C~~i~ 96 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVG----EHCQAIM 96 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCccc----HHHHHHh
Confidence 45677899999999999999877654 688999999999999999998763221110 0000000111 0011111
Q ss_pred HHcCCCc-----CCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCccc--cccccCCcccccccccCCCCCcEEEEE
Q 037947 225 GALGLFL-----GEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRRRCAMLLT 292 (780)
Q Consensus 225 ~~l~~~~-----~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~~s~iivT 292 (780)
..-.... ......++ ++.+.+.+ .+++-++|+|++..... .+.+...+ .....++.+|++
T Consensus 97 ~g~h~Dv~e~~a~s~~gvd~-IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtL-------EePp~~~~fIl~ 168 (598)
T PRK09111 97 EGRHVDVLEMDAASHTGVDD-IREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTL-------EEPPPHVKFIFA 168 (598)
T ss_pred cCCCCceEEecccccCCHHH-HHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHH-------HhCCCCeEEEEE
Confidence 1111100 00011111 22222222 23556899999866532 22332222 344456676655
Q ss_pred e-cchhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHH
Q 037947 293 S-RRKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVA 358 (780)
Q Consensus 293 t-r~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 358 (780)
| ....+..........+++.+++.++....+.+.+.... ..--.+..+.|++.++|.+.-+....
T Consensus 169 tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg-i~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 169 TTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG-VEVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred eCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5 44444333344567899999999999999888764221 11223677889999999987655443
No 98
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.19 E-value=5.4e-05 Score=81.62 Aligned_cols=180 Identities=17% Similarity=0.224 Sum_probs=100.8
Q ss_pred CccccCCchHHHHHHHHHHc----c---------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC
Q 037947 149 GYEQFESRMPTFQDIMEALK----D---------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD 215 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (780)
...++.|.++.++++.+.+. . ...+-+.++|++|+|||++|+.+++..... | +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~--~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT--F-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC--E-----Eecch---
Confidence 34578899999999988764 1 124568999999999999999999876432 2 22211
Q ss_pred HHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhc-cCcEEEEEeCCCCccccc--cc-------cCCccccccccc--CC
Q 037947 216 YKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLK-ASRVLVILDDVWNRLDLD--AV-------GIPYKNYQNEIK--DD 283 (780)
Q Consensus 216 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~~~~--~l-------~~~~~~~~~~l~--~~ 283 (780)
.++.... ++ . .......+.+..+ ..+.+|+|||++....-. .. ...+..++..+. ..
T Consensus 190 -~~l~~~~---~g------~-~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 190 -SELVRKY---IG------E-GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred -HHHHHHh---hh------H-HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1111111 11 0 1112222322222 367899999997642100 00 000000111111 12
Q ss_pred CCCcEEEEEecchhHHhhh-c---CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 284 RRRCAMLLTSRRKDLLYNE-M---NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 284 ~~~s~iivTtr~~~v~~~~-~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
..+..||.||......... . .-...+.+++.+.++..++|..++......+.. ....+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 3467788888765432111 1 224578999999999999999887643322211 1456777787764
No 99
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=2.3e-05 Score=87.83 Aligned_cols=182 Identities=14% Similarity=0.178 Sum_probs=107.6
Q ss_pred CCccccCCchHHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhccC-------------------CCCeEEE
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVMEDK-------------------LFDEVVM 207 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 207 (780)
....+++|.+..++.+..++..++.. .+.++|+.|+||||+|+.+.+...-.. .|.-.++
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~e 92 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIE 92 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeE
Confidence 34567889999999999999876665 568999999999999999988763211 0111222
Q ss_pred EEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc--cccccCCcccccccccCCCC
Q 037947 208 VVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRR 285 (780)
Q Consensus 208 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~ 285 (780)
+..+....++++ ++++...... -..+++-++|+|++..... .+.+...+ .....
T Consensus 93 i~~~~~~~vd~i-r~l~~~~~~~----------------p~~~~~kVvIIDEad~ls~~a~naLLK~L-------Eepp~ 148 (527)
T PRK14969 93 VDAASNTQVDAM-RELLDNAQYA----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTL-------EEPPE 148 (527)
T ss_pred eeccccCCHHHH-HHHHHHHhhC----------------cccCCceEEEEcCcccCCHHHHHHHHHHH-------hCCCC
Confidence 222211122111 1222111100 0124667999999976632 23222222 33334
Q ss_pred CcEEEEEecc-hhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHH
Q 037947 286 RCAMLLTSRR-KDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAI 354 (780)
Q Consensus 286 ~s~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 354 (780)
.+.+|++|.+ ..+..........+++++++.++..+.+.+.+.... ...-.+..+.|++.++|.+--+
T Consensus 149 ~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg-i~~~~~al~~la~~s~Gslr~a 217 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN-IPFDATALQLLARAAAGSMRDA 217 (527)
T ss_pred CEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 5666655544 333222233356899999999999988877664222 1223356688999999987533
No 100
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.17 E-value=1.8e-06 Score=66.30 Aligned_cols=59 Identities=31% Similarity=0.455 Sum_probs=37.5
Q ss_pred CCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCC-ccccCCCCCCEEEccCcc
Q 037947 533 PKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP-STLGCLINLQTLSFECCV 592 (780)
Q Consensus 533 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~ 592 (780)
++|+.|.+++|.+. .+|...|.++++|++|++++|.++.+| ..+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35666666666554 456666666677777777766666553 355666666666666654
No 101
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=5.8e-05 Score=81.68 Aligned_cols=184 Identities=11% Similarity=0.144 Sum_probs=106.2
Q ss_pred CCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhcc------CCCCeE-EEEEEccCCCHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMED------KLFDEV-VMVVVSQKPDYKAI 219 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~~-~wv~vs~~~~~~~~ 219 (780)
....+++|.+...+.+.+++..++. +.+.++|++|+||||+|+.+.+..... ..|... +-+......++.+
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 92 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD- 92 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH-
Confidence 4456788999999999999987655 488899999999999999998876431 112211 1111111111111
Q ss_pred HHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc--cccccCCcccccccccCCCCCcEEEEEec-ch
Q 037947 220 QNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRRRCAMLLTSR-RK 296 (780)
Q Consensus 220 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~~s~iivTtr-~~ 296 (780)
.+++++++... -..+++-++++|++..... ++.+...+ ......+.+|++|. ..
T Consensus 93 i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~l-------e~~~~~~~~Il~~~~~~ 149 (367)
T PRK14970 93 IRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTL-------EEPPAHAIFILATTEKH 149 (367)
T ss_pred HHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHH-------hCCCCceEEEEEeCCcc
Confidence 11222211100 0123556899999865432 33332111 22233455555553 33
Q ss_pred hHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHH
Q 037947 297 DLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITT 356 (780)
Q Consensus 297 ~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 356 (780)
.+..........++.++++.++....+...+..... .--.+..+.+++.++|.+-.+..
T Consensus 150 kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i~~~al~~l~~~~~gdlr~~~~ 208 (367)
T PRK14970 150 KIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KFEDDALHIIAQKADGALRDALS 208 (367)
T ss_pred cCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHHHH
Confidence 332222334567999999999999888876642221 12236788888999987664433
No 102
>PRK09087 hypothetical protein; Validated
Probab=98.14 E-value=2.6e-05 Score=77.48 Aligned_cols=146 Identities=15% Similarity=0.068 Sum_probs=88.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA 250 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 250 (780)
..+.+.|+|++|+|||+|++.+++.... .|++.. .+..++.. .+.+
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~~~---------------------~~~~ 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDAAN---------------------AAAE 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHHHH---------------------hhhc
Confidence 3567999999999999999988875421 233322 11111111 1111
Q ss_pred CcEEEEEeCCCCcccc-ccccCCcccccccccCCCCCcEEEEEecchhHH--------hhhcCCcceEEcCCCChHHHHH
Q 037947 251 SRVLVILDDVWNRLDL-DAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL--------YNEMNSQKNFLINVLSDQEAVQ 321 (780)
Q Consensus 251 kr~LlVlDdv~~~~~~-~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~--------~~~~~~~~~~~l~~L~~~~~~~ 321 (780)
-+|++||+...... +.+. .+.+.+. ..|..||+|++...-. ...+.....+++++++.++-.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf----~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~ 160 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLF----HLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQ 160 (226)
T ss_pred --CeEEEECCCCCCCCHHHHH----HHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHH
Confidence 27888999654211 1111 1111112 2356788888753221 1123455789999999999999
Q ss_pred HHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHH
Q 037947 322 LFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVAT 359 (780)
Q Consensus 322 Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 359 (780)
++.+.+... .-.--+++..-|++.+.|..-++..+-.
T Consensus 161 iL~~~~~~~-~~~l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 161 VIFKLFADR-QLYVDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999888532 2223357888899999888877665433
No 103
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.13 E-value=3.8e-05 Score=77.01 Aligned_cols=172 Identities=12% Similarity=0.082 Sum_probs=97.0
Q ss_pred cccC-CchHH-HHHHHHHHc-cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHc
Q 037947 151 EQFE-SRMPT-FQDIMEALK-DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGAL 227 (780)
Q Consensus 151 ~~~~-gr~~~-~~~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 227 (780)
+.|+ |.... +..+.++.. ......+.|+|+.|+|||+||+.+++.....+ ....+++...... . +
T Consensus 18 d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~--~~~~~i~~~~~~~------~----~ 85 (227)
T PRK08903 18 DNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG--RNARYLDAASPLL------A----F 85 (227)
T ss_pred cccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEehHHhHH------H----H
Confidence 3444 44333 344444433 23456789999999999999999999764331 2344554433110 0 0
Q ss_pred CCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccccc--cccCCcccccccccC-CCCCc-EEEEEecchhHHhh--
Q 037947 228 GLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLDLD--AVGIPYKNYQNEIKD-DRRRC-AMLLTSRRKDLLYN-- 301 (780)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~--~l~~~~~~~~~~l~~-~~~~s-~iivTtr~~~v~~~-- 301 (780)
... ...-+||+||+.....+. .+...+ .. ...+. .||+|++.......
T Consensus 86 ------------------~~~-~~~~~liiDdi~~l~~~~~~~L~~~~-------~~~~~~~~~~vl~~~~~~~~~~~l~ 139 (227)
T PRK08903 86 ------------------DFD-PEAELYAVDDVERLDDAQQIALFNLF-------NRVRAHGQGALLVAGPAAPLALPLR 139 (227)
T ss_pred ------------------hhc-ccCCEEEEeChhhcCchHHHHHHHHH-------HHHHHcCCcEEEEeCCCCHHhCCCC
Confidence 011 233478999997653322 121111 11 12233 36666664332110
Q ss_pred -----hcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHH
Q 037947 302 -----EMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATAL 361 (780)
Q Consensus 302 -----~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 361 (780)
.......++++++++++-..++.+.+... ...--++..+.+++.+.|.+..+..+...+
T Consensus 140 ~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~-~v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 140 EDLRTRLGWGLVYELKPLSDADKIAALKAAAAER-GLQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 12224689999999988777776644211 122234678888889999998877766554
No 104
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.13 E-value=5.2e-05 Score=89.73 Aligned_cols=183 Identities=11% Similarity=0.160 Sum_probs=102.7
Q ss_pred CccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCC----CCeEEE-EEEccCCCHHHHHHHH
Q 037947 149 GYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKL----FDEVVM-VVVSQKPDYKAIQNEI 223 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~w-v~vs~~~~~~~~~~~i 223 (780)
..++++||+.++.++++.|......-+.++|++|+||||+|+.+++....... .+..+| +..+.-..
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a-------- 256 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA-------- 256 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc--------
Confidence 45688999999999999998776667789999999999999999998743321 122332 22221000
Q ss_pred HHHcCCCcCCCCCHHHHHHHHHHHhc--cCcEEEEEeCCCCccc------cccccCCcccccccccCCCCCcEEEEEecc
Q 037947 224 AGALGLFLGEHEDVSERAHLLRQRLK--ASRVLVILDDVWNRLD------LDAVGIPYKNYQNEIKDDRRRCAMLLTSRR 295 (780)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~~l~~~~~~s~iivTtr~ 295 (780)
+.. .....++..+.+.+.+. +++.+|++|++..... -.+....+ ...+ ....-++|-||..
T Consensus 257 ----g~~--~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~L---kp~l--~~G~l~~IgaTT~ 325 (852)
T TIGR03345 257 ----GAS--VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLL---KPAL--ARGELRTIAATTW 325 (852)
T ss_pred ----ccc--cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHh---hHHh--hCCCeEEEEecCH
Confidence 000 00012233333333332 4689999999865421 11100001 0111 1223556666665
Q ss_pred hhHH------hhhcCCcceEEcCCCChHHHHHHHHHhhC---CCCCCCChhHHHHHHHHHhCCC
Q 037947 296 KDLL------YNEMNSQKNFLINVLSDQEAVQLFEKMSG---VFEGPLDFQNLAIKIARECGGL 350 (780)
Q Consensus 296 ~~v~------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~---~~~~~~~~~~~~~~i~~~c~Gl 350 (780)
.+.. .........+.+++++.++..+++..... ....-.-..+....+++.+.+.
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 3221 11223456899999999999999754442 1111112235556666666543
No 105
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.10 E-value=3.5e-05 Score=76.23 Aligned_cols=167 Identities=19% Similarity=0.156 Sum_probs=94.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccC
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKAS 251 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 251 (780)
...+.|+|..|+|||.|.+.+++.......-..++|++ ..++...+...+.. .....+.+.++ .
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~---------~~~~~~~~~~~-~ 97 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRD---------GEIEEFKDRLR-S 97 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHT---------TSHHHHHHHHC-T
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHc---------ccchhhhhhhh-c
Confidence 35689999999999999999999876542222355654 34455555554432 11223444444 3
Q ss_pred cEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhHH--------hhhcCCcceEEcCCCChHHHHHHH
Q 037947 252 RVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL--------YNEMNSQKNFLINVLSDQEAVQLF 323 (780)
Q Consensus 252 r~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~--------~~~~~~~~~~~l~~L~~~~~~~Lf 323 (780)
-=+|++||++....-......+-.+.+.+. ..|-+||+|+...... ...+.....+++++++.++-.+++
T Consensus 98 ~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp SSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred CCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 348899999766322111111111111112 2456899999665321 112345568999999999999999
Q ss_pred HHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHH
Q 037947 324 EKMSGVFEGPLDFQNLAIKIARECGGLPVAITTV 357 (780)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 357 (780)
.+.+.... -+--+++++-|++.+.+..-.+..+
T Consensus 176 ~~~a~~~~-~~l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 176 QKKAKERG-IELPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHTT---S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHhC-CCCcHHHHHHHHHhhcCCHHHHHHH
Confidence 98885222 1233467777888877766555443
No 106
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.10 E-value=7.4e-05 Score=83.95 Aligned_cols=197 Identities=14% Similarity=0.150 Sum_probs=109.9
Q ss_pred CCccccCCchHHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
....+++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+++...-....+. -.++.+.+ -+.|...
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~---~pCg~C~~----C~~i~~~ 82 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTA---TPCGVCES----CVALAPN 82 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCC---CcccccHH----HHHhhcc
Confidence 45667899999999999999877765 4689999999999999999987542111100 00011000 0001000
Q ss_pred cC-------CCcCCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEE
Q 037947 227 LG-------LFLGEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLT 292 (780)
Q Consensus 227 l~-------~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivT 292 (780)
-+ .+.......+ .++.+.+.+ .+++-++|+|++.... ..+.+.. .+......+.+|++
T Consensus 83 ~~~~~dvieidaas~~gvd-~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK-------~LEEpp~~~~fIL~ 154 (584)
T PRK14952 83 GPGSIDVVELDAASHGGVD-DTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLK-------IVEEPPEHLIFIFA 154 (584)
T ss_pred cCCCceEEEeccccccCHH-HHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHH-------HHhcCCCCeEEEEE
Confidence 00 0000000011 112222221 2456699999986653 2223222 22334445565554
Q ss_pred e-cchhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChH-HHHHHHHH
Q 037947 293 S-RRKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPV-AITTVATA 360 (780)
Q Consensus 293 t-r~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~ 360 (780)
| ....+..........+++.+++.++..+.+.+.+.... ..--.+....|++.++|.+- ++..+-.+
T Consensus 155 tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg-i~i~~~al~~Ia~~s~GdlR~aln~Ldql 223 (584)
T PRK14952 155 TTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEG-VVVDDAVYPLVIRAGGGSPRDTLSVLDQL 223 (584)
T ss_pred eCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4 44444333344567899999999999888877664222 11223567788999999885 44444333
No 107
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.09 E-value=0.00021 Score=74.99 Aligned_cols=198 Identities=13% Similarity=0.094 Sum_probs=126.4
Q ss_pred CCccccCCchHHHHHHHHHHc----cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALK----DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEI 223 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 223 (780)
..+....||+.+++.+.+++. .+..+-+-|.|.+|.|||.+...++.+......=..++++++-.-.....++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 345678899999999988876 4556788999999999999999999987554222345677666656778888888
Q ss_pred HHHcCCCcCCCCCHHHHHHHHHHHhcc--CcEEEEEeCCCCccc--cccccCCcccccccccCCCCCcEEEEEecch--h
Q 037947 224 AGALGLFLGEHEDVSERAHLLRQRLKA--SRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRRRCAMLLTSRRK--D 297 (780)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~--~ 297 (780)
+..+...........+....+..+..+ +-+|+|+|.++.... -..+...|. ++.-+++++|+.---. +
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFe------wp~lp~sr~iLiGiANslD 300 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFE------WPKLPNSRIILIGIANSLD 300 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehh------cccCCcceeeeeeehhhhh
Confidence 887732222222234556667777766 358999999866522 111222221 2344566655532211 1
Q ss_pred HH----hhh----cCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 298 LL----YNE----MNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 298 v~----~~~----~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
.. ... .-....+..+|.+.++-.++|..+.........+....+.++++|.|.-
T Consensus 301 lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 301 LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPS 362 (529)
T ss_pred HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCc
Confidence 11 111 1223467788999999999999988654444444445555666665543
No 108
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.09 E-value=6.5e-05 Score=87.81 Aligned_cols=178 Identities=12% Similarity=0.123 Sum_probs=109.1
Q ss_pred CCccccCCchHHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhccCCCC---------------------eE
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVMEDKLFD---------------------EV 205 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~---------------------~~ 205 (780)
....+++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+.+...-..... -+
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv 91 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDV 91 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcE
Confidence 34567899999999999999877664 578999999999999999988764211110 01
Q ss_pred EEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHH-----hccCcEEEEEeCCCCcc--ccccccCCcccccc
Q 037947 206 VMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQR-----LKASRVLVILDDVWNRL--DLDAVGIPYKNYQN 278 (780)
Q Consensus 206 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~ 278 (780)
+++.......++++ +.+.+. ..++.-++|||+++... ..+.+...+
T Consensus 92 ~eidaas~~~Vd~i----------------------R~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~L----- 144 (824)
T PRK07764 92 TEIDAASHGGVDDA----------------------RELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIV----- 144 (824)
T ss_pred EEecccccCCHHHH----------------------HHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHH-----
Confidence 12211111112111 112221 23456689999997763 233332222
Q ss_pred cccCCCCCcEEEEEecc-hhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHH
Q 037947 279 EIKDDRRRCAMLLTSRR-KDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAIT 355 (780)
Q Consensus 279 ~l~~~~~~s~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 355 (780)
..-...+.+|++|.+ ..+..........|++.+++.++..+.+.+.+.... ..--.+....|++.++|.+..+.
T Consensus 145 --EEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EG-v~id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 145 --EEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEG-VPVEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred --hCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHH
Confidence 444456666655544 334333345567899999999999888877653222 11223566789999999885443
No 109
>PRK05642 DNA replication initiation factor; Validated
Probab=98.09 E-value=6.3e-05 Score=75.40 Aligned_cols=154 Identities=17% Similarity=0.196 Sum_probs=93.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASR 252 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 252 (780)
..+.|+|..|+|||.|++.+++....+ -..++|++..+ +... ...+.+.+.+-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~------------------~~~~~~~~~~~d 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR------------------GPELLDNLEQYE 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh------------------hHHHHHhhhhCC
Confidence 578999999999999999999876543 23467776543 1111 012233333333
Q ss_pred EEEEEeCCCCc---ccccc-ccCCcccccccccCCCCCcEEEEEecchhHHh--------hhcCCcceEEcCCCChHHHH
Q 037947 253 VLVILDDVWNR---LDLDA-VGIPYKNYQNEIKDDRRRCAMLLTSRRKDLLY--------NEMNSQKNFLINVLSDQEAV 320 (780)
Q Consensus 253 ~LlVlDdv~~~---~~~~~-l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~~--------~~~~~~~~~~l~~L~~~~~~ 320 (780)
++|+||+... ..|+. +...+ +.+ ...|..||+|++...-.. ........+++++++.++-.
T Consensus 100 -~LiiDDi~~~~~~~~~~~~Lf~l~----n~~--~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~ 172 (234)
T PRK05642 100 -LVCLDDLDVIAGKADWEEALFHLF----NRL--RDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKL 172 (234)
T ss_pred -EEEEechhhhcCChHHHHHHHHHH----HHH--HhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHH
Confidence 6889999643 24432 22111 111 123567888887644221 11223467999999999999
Q ss_pred HHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHH
Q 037947 321 QLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATA 360 (780)
Q Consensus 321 ~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 360 (780)
+++..++... .-.--+++..-|++.+.|..-.+..+-..
T Consensus 173 ~il~~ka~~~-~~~l~~ev~~~L~~~~~~d~r~l~~~l~~ 211 (234)
T PRK05642 173 RALQLRASRR-GLHLTDEVGHFILTRGTRSMSALFDLLER 211 (234)
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9998666432 12222578888888888877665554433
No 110
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=8.3e-05 Score=84.17 Aligned_cols=197 Identities=15% Similarity=0.166 Sum_probs=107.8
Q ss_pred CCccccCCchHHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEE-EccCCCHHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVV-VSQKPDYKAIQNEIAG 225 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~~~~i~~ 225 (780)
....+++|.+..+..|..++..+++. .+.++|+.|+||||+|+.+++...-....+.-.|.. +...+..-...+.+..
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~~ 92 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFDA 92 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHhc
Confidence 44567899999999999988876664 588999999999999999988764321111001110 0000000001111111
Q ss_pred HcCCCc---C--CCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCccc--cccccCCcccccccccCCCCCcEEEEEe
Q 037947 226 ALGLFL---G--EHEDVSERAHLLRQRL-----KASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRRRCAMLLTS 293 (780)
Q Consensus 226 ~l~~~~---~--~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~~s~iivTt 293 (780)
.-..+. . .....++. +.+.+.+ .+.+-++|+|+++.... .+.+...+ ......+.+|++|
T Consensus 93 g~~~n~~~~d~~s~~~vd~I-r~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~L-------EePp~~tv~IL~t 164 (620)
T PRK14954 93 GTSLNISEFDAASNNSVDDI-RQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTL-------EEPPPHAIFIFAT 164 (620)
T ss_pred cCCCCeEEecccccCCHHHH-HHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHH-------hCCCCCeEEEEEe
Confidence 000000 0 00111222 2222222 34556899999866532 22332222 3333445555444
Q ss_pred -cchhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHH
Q 037947 294 -RRKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVA 353 (780)
Q Consensus 294 -r~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 353 (780)
+...+..........+++.+++.++....+.+.+.... ..--.+.++.|++.++|..--
T Consensus 165 ~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg-i~I~~eal~~La~~s~Gdlr~ 224 (620)
T PRK14954 165 TELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG-IQIDADALQLIARKAQGSMRD 224 (620)
T ss_pred CChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhCCCHHH
Confidence 44444333345567899999999998888877653211 112246788899999996653
No 111
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.08 E-value=4.2e-05 Score=81.03 Aligned_cols=154 Identities=15% Similarity=0.172 Sum_probs=89.7
Q ss_pred cccccccCCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHH
Q 037947 141 WTETLHLRGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAI 219 (780)
Q Consensus 141 ~~~~~~~~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 219 (780)
|.....|....+++|.+...+.+..++..++. .++.++|++|+||||+|+.+++.... ....++.+. .....
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~~- 83 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRIDF- 83 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHHH-
Confidence 33333445567889999999999999886654 56666999999999999999886521 123444443 22221
Q ss_pred HHHHHHHcCCCcCCCCCHHHHHHHHHHH--hccCcEEEEEeCCCCccc---cccccCCcccccccccCCCCCcEEEEEec
Q 037947 220 QNEIAGALGLFLGEHEDVSERAHLLRQR--LKASRVLVILDDVWNRLD---LDAVGIPYKNYQNEIKDDRRRCAMLLTSR 294 (780)
Q Consensus 220 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVlDdv~~~~~---~~~l~~~~~~~~~~l~~~~~~s~iivTtr 294 (780)
.+..+..+ ... +.+.+-++|+||+..... ...+...+ .....++++|+||.
T Consensus 84 i~~~l~~~-----------------~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~l-------e~~~~~~~~Ilt~n 139 (316)
T PHA02544 84 VRNRLTRF-----------------ASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFM-------EAYSKNCSFIITAN 139 (316)
T ss_pred HHHHHHHH-----------------HHhhcccCCCeEEEEECcccccCHHHHHHHHHHH-------HhcCCCceEEEEcC
Confidence 11111111 111 113456899999965511 11121111 23345678888886
Q ss_pred chhHH-hhhcCCcceEEcCCCChHHHHHHHHH
Q 037947 295 RKDLL-YNEMNSQKNFLINVLSDQEAVQLFEK 325 (780)
Q Consensus 295 ~~~v~-~~~~~~~~~~~l~~L~~~~~~~Lf~~ 325 (780)
..... .........+.++..+.++..+++..
T Consensus 140 ~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 140 NKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred ChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 54322 21223345677777788877766554
No 112
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.07 E-value=1e-05 Score=84.88 Aligned_cols=93 Identities=13% Similarity=0.143 Sum_probs=65.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC--CCHHHHHHHHHHHcCCCcCCCCCH--HHH----H
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK--PDYKAIQNEIAGALGLFLGEHEDV--SER----A 241 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~~~~i~~~l~~~~~~~~~~--~~~----~ 241 (780)
.....++|+|++|+|||||++.+++..... +|+..+|+.+.+. .++.++++.+...+-....+.+.. ... .
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 345689999999999999999999988765 8999999999866 789999999965432222222111 111 1
Q ss_pred HHHHHH-hccCcEEEEEeCCCCc
Q 037947 242 HLLRQR-LKASRVLVILDDVWNR 263 (780)
Q Consensus 242 ~~l~~~-L~~kr~LlVlDdv~~~ 263 (780)
+..... -++++.+|++|++...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 111122 2579999999998543
No 113
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.07 E-value=6.4e-05 Score=84.15 Aligned_cols=199 Identities=13% Similarity=0.149 Sum_probs=112.0
Q ss_pred CCccccCCchHHHHHHHHHHccCC-ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDN-INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
....+++|.+..++.|..++..++ ...+.++|+.|+||||+|+.+++...-....+.. .+..+ ..-+.|...
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~---pCg~C----~sC~~i~~g 85 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE---PCNTC----EQCRKVTQG 85 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC---CCccc----HHHHHHhcC
Confidence 445678898888888888887766 4678899999999999999999876432111000 00000 001111111
Q ss_pred cCCCc-----CCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEec
Q 037947 227 LGLFL-----GEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSR 294 (780)
Q Consensus 227 l~~~~-----~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr 294 (780)
-.... ......+ .++.+.+.+ .+++-++|+|++.... ..+.+...+ ........+|++|.
T Consensus 86 ~hpDv~eId~a~~~~Id-~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~L-------EEP~~~~ifILaTt 157 (624)
T PRK14959 86 MHVDVVEIDGASNRGID-DAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTL-------EEPPARVTFVLATT 157 (624)
T ss_pred CCCceEEEecccccCHH-HHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHh-------hccCCCEEEEEecC
Confidence 00000 0000011 112222222 3466799999996652 233332222 22233455666554
Q ss_pred c-hhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh-HHHHHHHHHHh
Q 037947 295 R-KDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP-VAITTVATALR 362 (780)
Q Consensus 295 ~-~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lai~~~~~~L~ 362 (780)
. ..+..........+++++++.++..+.+...+.... ..--.+.++.|++.++|.+ .|+..+..++.
T Consensus 158 ~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg-i~id~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 158 EPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG-VDYDPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred ChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4 444322334456899999999999988887664221 1122467888999999965 57766665543
No 114
>PF14516 AAA_35: AAA-like domain
Probab=98.06 E-value=0.00013 Score=77.19 Aligned_cols=207 Identities=14% Similarity=0.160 Sum_probs=122.9
Q ss_pred ccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC-----CCHHHHHHHHH
Q 037947 150 YEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK-----PDYKAIQNEIA 224 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i~ 224 (780)
..-.+.|...-+++.+.+.++ ...+.|.|+-.+|||+|...+.+....+ .+ .++++++... .+...+++.++
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f~~~~~ 86 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQFLRWFC 86 (331)
T ss_pred CCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHHHHHHH
Confidence 344568886777777777553 4689999999999999999999988765 23 4557776642 34666666665
Q ss_pred HHcCCCcCCCC-----------CHHHHHHHHHHHh-c--cCcEEEEEeCCCCccccc----cccCCccccccccc-CCCC
Q 037947 225 GALGLFLGEHE-----------DVSERAHLLRQRL-K--ASRVLVILDDVWNRLDLD----AVGIPYKNYQNEIK-DDRR 285 (780)
Q Consensus 225 ~~l~~~~~~~~-----------~~~~~~~~l~~~L-~--~kr~LlVlDdv~~~~~~~----~l~~~~~~~~~~l~-~~~~ 285 (780)
..+.....-.. ........+.+.+ . +++.+|+||+|+...... ++...++.+-..-. ....
T Consensus 87 ~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~ 166 (331)
T PF14516_consen 87 EEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIW 166 (331)
T ss_pred HHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCccc
Confidence 55433222111 1122233344432 2 489999999997664321 11111111111000 0011
Q ss_pred CcEEEEEecch--hHH----hhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHH
Q 037947 286 RCAMLLTSRRK--DLL----YNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVAT 359 (780)
Q Consensus 286 ~s~iivTtr~~--~v~----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 359 (780)
..-.+|...+. ... .........++|++++.+|...|+..+.... -....++|...++|+|.-+..++.
T Consensus 167 ~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-----~~~~~~~l~~~tgGhP~Lv~~~~~ 241 (331)
T PF14516_consen 167 QKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-----SQEQLEQLMDWTGGHPYLVQKACY 241 (331)
T ss_pred ceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-----CHHHHHHHHHHHCCCHHHHHHHHH
Confidence 11122222211 111 1112334578999999999999988764321 123388999999999999999999
Q ss_pred HHhCC
Q 037947 360 ALRNK 364 (780)
Q Consensus 360 ~L~~~ 364 (780)
.+...
T Consensus 242 ~l~~~ 246 (331)
T PF14516_consen 242 LLVEE 246 (331)
T ss_pred HHHHc
Confidence 99754
No 115
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=8.7e-05 Score=84.39 Aligned_cols=191 Identities=15% Similarity=0.156 Sum_probs=107.7
Q ss_pred CCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
....+++|.+..++.|..++..+++ ..+.++|+.|+||||+|+.+++..--....+ .+-.++.+ .... .
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~--~~~pC~~C-------~~~~-~ 84 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD--LLEPCQEC-------IENV-N 84 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCC--CCCchhHH-------HHhh-c
Confidence 4566788999999999999987665 4668999999999999999987653211000 00000000 0000 0
Q ss_pred cCC-----CcCCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEE-EEe
Q 037947 227 LGL-----FLGEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAML-LTS 293 (780)
Q Consensus 227 l~~-----~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~ii-vTt 293 (780)
... ........ +.++.+.+.+ .+++-++|+|++.... .+..+...+ -.....+.+| +|+
T Consensus 85 ~~~Dvieidaasn~~v-d~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtL-------EEPP~~tifILaTt 156 (725)
T PRK07133 85 NSLDIIEMDAASNNGV-DEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTL-------EEPPKHVIFILATT 156 (725)
T ss_pred CCCcEEEEeccccCCH-HHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHh-------hcCCCceEEEEEcC
Confidence 000 00000001 1122333333 2466699999986553 333332222 3333344544 455
Q ss_pred cchhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHH
Q 037947 294 RRKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTV 357 (780)
Q Consensus 294 r~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 357 (780)
+...+..........+++.+++.++..+.+...+.... ...-.+.++.|++.++|.+--+..+
T Consensus 157 e~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg-I~id~eAl~~LA~lS~GslR~Alsl 219 (725)
T PRK07133 157 EVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN-ISYEKNALKLIAKLSSGSLRDALSI 219 (725)
T ss_pred ChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 55555433345567899999999999988887653221 1122356788999999977544333
No 116
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.06 E-value=5.6e-05 Score=83.08 Aligned_cols=169 Identities=16% Similarity=0.108 Sum_probs=103.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASR 252 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 252 (780)
.-+.|+|..|+|||.|++.+.+.......-..+++++. .++...+...+... ......+.+.+. +.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~-------~~~~~~~~~~~~-~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKT-------HKEIEQFKNEIC-QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHh-------hhHHHHHHHHhc-cC
Confidence 45889999999999999999997654322223455443 45666666655421 012233444444 33
Q ss_pred EEEEEeCCCCcc---cc-ccccCCcccccccccCCCCCcEEEEEecchhHH--------hhhcCCcceEEcCCCChHHHH
Q 037947 253 VLVILDDVWNRL---DL-DAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL--------YNEMNSQKNFLINVLSDQEAV 320 (780)
Q Consensus 253 ~LlVlDdv~~~~---~~-~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~--------~~~~~~~~~~~l~~L~~~~~~ 320 (780)
-+||+||+.... .+ +.+.. +.+.+. ..|..||+|+...... ......+-.+.+++++.++-.
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~----l~N~~~--~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~ 281 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFT----IFNNFI--ENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTAT 281 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHH----HHHHHH--HcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHH
Confidence 488999996543 11 12211 112222 2344688886654321 111334557889999999999
Q ss_pred HHHHHhhCCCCC-CCChhHHHHHHHHHhCCChHHHHHHHHHH
Q 037947 321 QLFEKMSGVFEG-PLDFQNLAIKIARECGGLPVAITTVATAL 361 (780)
Q Consensus 321 ~Lf~~~~~~~~~-~~~~~~~~~~i~~~c~GlPLai~~~~~~L 361 (780)
+++.+++..... ..--+++..-|++.++|.|-.+..+...+
T Consensus 282 ~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 282 AIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 999998863221 13346888999999999998776655433
No 117
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.05 E-value=3.5e-06 Score=64.70 Aligned_cols=58 Identities=38% Similarity=0.612 Sum_probs=42.3
Q ss_pred CCCcEEEeecCCCCccCh-hhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCC
Q 037947 603 KKLVILSFRNSHIEQLPE-EIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNS 661 (780)
Q Consensus 603 ~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 661 (780)
++|++|++++|.+..+|. .+..+++|++|++++ +.++.+++..+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 356777777777777764 556777777777776 6677777777777777777777766
No 118
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.04 E-value=0.00013 Score=82.98 Aligned_cols=184 Identities=13% Similarity=0.137 Sum_probs=111.3
Q ss_pred CCccccCCchHHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhc---------------------cCCCCeE
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVME---------------------DKLFDEV 205 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~~~ 205 (780)
.....++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+.+...- ..+|+.
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~- 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI- 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce-
Confidence 34567889999999999999877664 5789999999999999998887531 112332
Q ss_pred EEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcc--ccccccCCcccccccccCC
Q 037947 206 VMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDD 283 (780)
Q Consensus 206 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~ 283 (780)
..+..+...+++++. +++.++.... ..+++-++|+|++.... ..+.+...+ ...
T Consensus 93 ~~ld~~~~~~vd~Ir-~li~~~~~~P----------------~~~~~KVvIIdea~~Ls~~a~naLLK~L-------Eep 148 (614)
T PRK14971 93 HELDAASNNSVDDIR-NLIEQVRIPP----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTL-------EEP 148 (614)
T ss_pred EEecccccCCHHHHH-HHHHHHhhCc----------------ccCCcEEEEEECcccCCHHHHHHHHHHH-------hCC
Confidence 222222222222222 1222111000 12345588999986663 233333222 333
Q ss_pred CCCcEEEE-EecchhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHH
Q 037947 284 RRRCAMLL-TSRRKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTV 357 (780)
Q Consensus 284 ~~~s~iiv-Ttr~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 357 (780)
..++.+|+ ||....+..........+++.+++.++....+.+.+.... -..-.+.+..|++.++|..--+...
T Consensus 149 p~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg-i~i~~~al~~La~~s~gdlr~al~~ 222 (614)
T PRK14971 149 PSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG-ITAEPEALNVIAQKADGGMRDALSI 222 (614)
T ss_pred CCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 34556555 4444444333345567899999999999988887664322 1222356788999999977644443
No 119
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.03 E-value=5.5e-05 Score=81.89 Aligned_cols=179 Identities=16% Similarity=0.230 Sum_probs=99.1
Q ss_pred ccccCCchHHHHHHHHHHc----c---------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH
Q 037947 150 YEQFESRMPTFQDIMEALK----D---------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY 216 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (780)
+.++.|+++.++++.+.+. . ...+-|.++|++|+|||++|+.+++..... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh----
Confidence 4568899999998888763 1 235678999999999999999999876422 233321
Q ss_pred HHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCccccc---------cccCCccccccccc--CCC
Q 037947 217 KAIQNEIAGALGLFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNRLDLD---------AVGIPYKNYQNEIK--DDR 284 (780)
Q Consensus 217 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~---------~l~~~~~~~~~~l~--~~~ 284 (780)
.++.... .+ . .....+.+.+.. ...+.+|+|||++....-. .+...+..++..+. ...
T Consensus 199 ~~l~~~~---~g------~-~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 SELVQKF---IG------E-GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HHHhHhh---cc------c-hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 1111111 01 0 112222333332 2467899999997641100 00000001111111 122
Q ss_pred CCcEEEEEecchhHHhhhc----CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 285 RRCAMLLTSRRKDLLYNEM----NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 285 ~~s~iivTtr~~~v~~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
.+..||.||.......... .-...+++++.+.++-.++|..++......... ....+++.+.|.-
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~s 337 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGAS 337 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCCC
Confidence 3567887887654321111 123579999999999999999877633222211 1345666666643
No 120
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.01 E-value=0.00017 Score=82.40 Aligned_cols=197 Identities=15% Similarity=0.124 Sum_probs=112.6
Q ss_pred CCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
....+++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++......... ....++.-...+.|...
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAEG 86 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhcC
Confidence 4456789999999999988886665 4568999999999999999998764221100 00011111222333222
Q ss_pred cCCCc---C--CCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEec
Q 037947 227 LGLFL---G--EHEDVSERAHLLRQRL-----KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSR 294 (780)
Q Consensus 227 l~~~~---~--~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr 294 (780)
.+... . .....++ .+.+.+.+ .+++-++|+|++.... ..+.+...+ ......+.+|++|.
T Consensus 87 ~~~d~~~i~~~~~~~vd~-ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~L-------Eepp~~tv~Il~t~ 158 (585)
T PRK14950 87 SAVDVIEMDAASHTSVDD-AREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTL-------EEPPPHAIFILATT 158 (585)
T ss_pred CCCeEEEEeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHH-------hcCCCCeEEEEEeC
Confidence 21110 0 0111111 22232322 2356699999986552 233332222 33334566666554
Q ss_pred ch-hHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHH
Q 037947 295 RK-DLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVAT 359 (780)
Q Consensus 295 ~~-~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 359 (780)
+. .+..........+++.+++.++....+.+.+..... .--.+.+..|++.++|.+..+.....
T Consensus 159 ~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl-~i~~eal~~La~~s~Gdlr~al~~Le 223 (585)
T PRK14950 159 EVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI-NLEPGALEAIARAATGSMRDAENLLQ 223 (585)
T ss_pred ChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 43 332222344567889999999998888877653221 12236788999999999875554443
No 121
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00025 Score=78.56 Aligned_cols=186 Identities=12% Similarity=0.147 Sum_probs=110.8
Q ss_pred CCccccCCchHHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhccCC------------------CC-eEEE
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVMEDKL------------------FD-EVVM 207 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~------------------F~-~~~w 207 (780)
....+++|-+...+.+..++..++.. ++.++|+.|+||||+|+.+++..--... +. .++.
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~e 90 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIE 90 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEE
Confidence 44567899999999999998877665 5689999999999999999887532111 11 1122
Q ss_pred EEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCC
Q 037947 208 VVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRR 285 (780)
Q Consensus 208 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~ 285 (780)
+..+....++++.. ++..... .-..+++-++|+|++.... ..+.+...+ .....
T Consensus 91 ldaas~~gId~IRe-lie~~~~----------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~L-------EEpp~ 146 (535)
T PRK08451 91 MDAASNRGIDDIRE-LIEQTKY----------------KPSMARFKIFIIDEVHMLTKEAFNALLKTL-------EEPPS 146 (535)
T ss_pred eccccccCHHHHHH-HHHHHhh----------------CcccCCeEEEEEECcccCCHHHHHHHHHHH-------hhcCC
Confidence 22111112222211 1111100 0011355689999996653 223332222 33345
Q ss_pred CcEEEEEecch-hHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHH
Q 037947 286 RCAMLLTSRRK-DLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVA 358 (780)
Q Consensus 286 ~s~iivTtr~~-~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 358 (780)
.+.+|++|.+. .+..........+++.+++.++..+.+.+.+.... ..--.+.++.|++.++|.+.-+..+.
T Consensus 147 ~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EG-i~i~~~Al~~Ia~~s~GdlR~alnlL 219 (535)
T PRK08451 147 YVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEG-VSYEPEALEILARSGNGSLRDTLTLL 219 (535)
T ss_pred ceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCcHHHHHHHH
Confidence 66767666553 22222334467899999999999988887664222 12234678899999999996555443
No 122
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.98 E-value=4.6e-05 Score=72.22 Aligned_cols=109 Identities=20% Similarity=0.240 Sum_probs=71.2
Q ss_pred cccccccCCccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHH
Q 037947 141 WTETLHLRGYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQ 220 (780)
Q Consensus 141 ~~~~~~~~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 220 (780)
|+....+....++||-++.++.+--.-.+.+.+-+.|.||+|+||||-+..+++..-...+=+.+.-.++|+...++-+.
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVR 96 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVR 96 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHH
Confidence 44444444556789999988888777778889999999999999999999998887654444455555666655544443
Q ss_pred HHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCc
Q 037947 221 NEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNR 263 (780)
Q Consensus 221 ~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~ 263 (780)
..|-.-.......+ .++.-++|||..++.
T Consensus 97 n~IK~FAQ~kv~lp--------------~grhKIiILDEADSM 125 (333)
T KOG0991|consen 97 NKIKMFAQKKVTLP--------------PGRHKIIILDEADSM 125 (333)
T ss_pred HHHHHHHHhhccCC--------------CCceeEEEeeccchh
Confidence 33321111111110 245568888888776
No 123
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.98 E-value=0.00011 Score=86.48 Aligned_cols=161 Identities=13% Similarity=0.196 Sum_probs=92.4
Q ss_pred CccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCC---C-CeEEEEEEccCCCHHHHHHHHH
Q 037947 149 GYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKL---F-DEVVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~~~~wv~vs~~~~~~~~~~~i~ 224 (780)
..++++||+++++++++.|......-+.++|++|+|||++|+.+++....... + +..+|. + +...+..
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~----~~~~l~a--- 251 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-L----DMGSLLA--- 251 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-e----cHHHHhh---
Confidence 34678999999999999988666666789999999999999999998744321 1 333442 1 1111111
Q ss_pred HHcCCCcCCCCCHHHHHHHHHHHhc-cCcEEEEEeCCCCccccc-------cccCCcccccccccCCCCCcEEEEEecch
Q 037947 225 GALGLFLGEHEDVSERAHLLRQRLK-ASRVLVILDDVWNRLDLD-------AVGIPYKNYQNEIKDDRRRCAMLLTSRRK 296 (780)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~~~~-------~l~~~~~~~~~~l~~~~~~s~iivTtr~~ 296 (780)
. .... .+.++..+.+.+.++ .++.+|++|++.....-. .....+ ...+. ...-++|-+|...
T Consensus 252 -~--~~~~--g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L---~~~l~--~g~i~~IgaTt~~ 321 (731)
T TIGR02639 252 -G--TKYR--GDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLL---KPALS--SGKLRCIGSTTYE 321 (731)
T ss_pred -h--cccc--chHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHH---HHHHh--CCCeEEEEecCHH
Confidence 0 0000 113344444554443 367899999986442100 000001 01111 1233455555442
Q ss_pred hH------HhhhcCCcceEEcCCCChHHHHHHHHHhh
Q 037947 297 DL------LYNEMNSQKNFLINVLSDQEAVQLFEKMS 327 (780)
Q Consensus 297 ~v------~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 327 (780)
+. -.........+++++++.++..+++....
T Consensus 322 e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 322 EYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 21 01112234579999999999999998655
No 124
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00026 Score=77.94 Aligned_cols=181 Identities=13% Similarity=0.163 Sum_probs=106.0
Q ss_pred CCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccC---------------------CCCeE
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDK---------------------LFDEV 205 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~~ 205 (780)
....+++|.+..++.+.+++..++. ..+.++|+.|+||||+|+.+.+...... +++ .
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d-~ 92 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD-V 92 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-e
Confidence 3456788999999999999987665 5678999999999999999988763221 111 1
Q ss_pred EEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcc--ccccccCCcccccccccCC
Q 037947 206 VMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDD 283 (780)
Q Consensus 206 ~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~ 283 (780)
+++.......++++ +++.+.+. ..-..+.+-++|+|++.... ..+.+...+ ...
T Consensus 93 ~~i~g~~~~gid~i-r~i~~~l~----------------~~~~~~~~kvvIIdead~lt~~~~n~LLk~l-------Eep 148 (451)
T PRK06305 93 LEIDGASHRGIEDI-RQINETVL----------------FTPSKSRYKIYIIDEVHMLTKEAFNSLLKTL-------EEP 148 (451)
T ss_pred EEeeccccCCHHHH-HHHHHHHH----------------hhhhcCCCEEEEEecHHhhCHHHHHHHHHHh-------hcC
Confidence 11111111111111 11111110 00112566789999986552 222222222 333
Q ss_pred CCCcEEEEEecc-hhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHH
Q 037947 284 RRRCAMLLTSRR-KDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAI 354 (780)
Q Consensus 284 ~~~s~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 354 (780)
..++.+|++|.. ..+..........+++.+++.++....+.+.+.... ..--.+.++.|++.++|.+--+
T Consensus 149 ~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg-~~i~~~al~~L~~~s~gdlr~a 219 (451)
T PRK06305 149 PQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG-IETSREALLPIARAAQGSLRDA 219 (451)
T ss_pred CCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 345566666543 333222234456899999999999888887654211 1123467888999999977533
No 125
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00022 Score=78.93 Aligned_cols=181 Identities=12% Similarity=0.146 Sum_probs=107.2
Q ss_pred CCccccCCchHHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhccC-------------------CCCeEEE
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVMEDK-------------------LFDEVVM 207 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~w 207 (780)
....+++|.+..+..+.+++..++.. .+.++|+.|+||||+|+.++....-.. .|...++
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~e 92 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIE 92 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEE
Confidence 44567889999999999999876654 567899999999999999988753110 0111122
Q ss_pred EEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCcc--ccccccCCcccccccc
Q 037947 208 VVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEI 280 (780)
Q Consensus 208 v~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l 280 (780)
+..+....+ +..+.+.+.. .+++-++|+|++.... ..+.+...+
T Consensus 93 idaas~~gv----------------------d~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~L------- 143 (486)
T PRK14953 93 IDAASNRGI----------------------DDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTL------- 143 (486)
T ss_pred EeCccCCCH----------------------HHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHH-------
Confidence 211111111 1112232222 3466799999986552 222332222
Q ss_pred cCCCCCcEEEEEe-cchhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHH
Q 037947 281 KDDRRRCAMLLTS-RRKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVA 358 (780)
Q Consensus 281 ~~~~~~s~iivTt-r~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 358 (780)
........+|++| +...+..........+++.+++.++....+.+.+.... ..--.+.+..|++.++|.+..+....
T Consensus 144 Eepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg-i~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 144 EEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK-IEYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred hcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3333344555544 43333322234456899999999999888887664222 12223667788999999876554444
No 126
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.92 E-value=8.7e-07 Score=97.35 Aligned_cols=158 Identities=25% Similarity=0.277 Sum_probs=80.4
Q ss_pred cCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCCcccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecC
Q 037947 555 EGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLS 634 (780)
Q Consensus 555 ~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~ 634 (780)
..++.|..|++.+|.+..+...+..+++|++|++++|.|+.+..+..+..|+.|++.+|.+..++. +..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccC-CccchhhhcccCC
Confidence 345556666666665555444355566666666666666665555555556666666665555543 3335556666665
Q ss_pred CCCCCcccCc-cccCCCcccceeeccCCCCcccc-------------ccCCccchhhhcCCCC--CCEEEeeccCCCCCC
Q 037947 635 NCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEI-------------EGQNNASLAELNQLSR--LTTLEMHILDAQVMP 698 (780)
Q Consensus 635 ~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~-------------~~~~~~~l~~l~~L~~--L~~L~l~~~~~~~~~ 698 (780)
+ +.+..+.+ . +..+.+|+.+.+.+|.+...- .......+..+..+.. |+.+++..|.+...+
T Consensus 171 ~-n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~ 248 (414)
T KOG0531|consen 171 Y-NRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSP 248 (414)
T ss_pred c-chhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccccc
Confidence 5 34444422 1 245555555555555321100 0000111112222222 677778877777664
Q ss_pred ccc-cccCccEEEEEecC
Q 037947 699 REL-FSVGLERYKIFLGD 715 (780)
Q Consensus 699 ~~~-~~~~L~~L~i~~~~ 715 (780)
..+ .+.++..+.+..+.
T Consensus 249 ~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 249 EGLENLKNLPVLDLSSNR 266 (414)
T ss_pred ccccccccccccchhhcc
Confidence 333 55566666665443
No 127
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.90 E-value=0.00013 Score=74.66 Aligned_cols=167 Identities=20% Similarity=0.237 Sum_probs=104.0
Q ss_pred cccCCchHHHHHHHHHHccCCc---cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHc
Q 037947 151 EQFESRMPTFQDIMEALKDDNI---NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGAL 227 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~~~~~---~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 227 (780)
..|.+|+.++..+...+.++.. ..|.|+|.+|.|||.+.+.+.+.... ..+|+++-+.++...++..|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHh
Confidence 3466899999999988874432 45589999999999999999998733 358999999999999999999998
Q ss_pred CCCcCCCCC-------HHHHHHHHHH--Hhc--cCcEEEEEeCCCCccccccccCCccccc--ccccCCCCCcEEEEEec
Q 037947 228 GLFLGEHED-------VSERAHLLRQ--RLK--ASRVLVILDDVWNRLDLDAVGIPYKNYQ--NEIKDDRRRCAMLLTSR 294 (780)
Q Consensus 228 ~~~~~~~~~-------~~~~~~~l~~--~L~--~kr~LlVlDdv~~~~~~~~l~~~~~~~~--~~l~~~~~~s~iivTtr 294 (780)
+....+... ..+....+.+ ... ++.++||||+++...+.+++.-+ .+. +.+. +.+.. +|+++-
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~--~l~~L~el~-~~~~i-~iils~ 156 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQ--CLFRLYELL-NEPTI-VIILSA 156 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHH--HHHHHHHHh-CCCce-EEEEec
Confidence 622221110 1112222222 112 35899999999877665543211 010 1111 12233 333332
Q ss_pred ch--hHHhhhcCC--cceEEcCCCChHHHHHHHHHh
Q 037947 295 RK--DLLYNEMNS--QKNFLINVLSDQEAVQLFEKM 326 (780)
Q Consensus 295 ~~--~v~~~~~~~--~~~~~l~~L~~~~~~~Lf~~~ 326 (780)
.. ..-...++. ..++..+.-+.+|...++.+.
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 22 221111233 345677888999998888653
No 128
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00041 Score=79.08 Aligned_cols=198 Identities=13% Similarity=0.110 Sum_probs=111.0
Q ss_pred CCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
.....++|.+..+..|..++..++. ..+.++|+.|+||||+|+.+++..--...... . ...+..-+..+.+...
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~-~----~~~Cg~C~~C~~i~~g 87 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKP-T----PEPCGKCELCRAIAAG 87 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCC-C----CCCCcccHHHHHHhcC
Confidence 4456788999999999999887654 67889999999999999999988643211100 0 0111111222222222
Q ss_pred cCCCc-----CCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEec
Q 037947 227 LGLFL-----GEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSR 294 (780)
Q Consensus 227 l~~~~-----~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr 294 (780)
..... ...... +.++.+.+.+ .+++-++|+|++.... ..+.+...+ ......+.+|++|.
T Consensus 88 ~h~D~~ei~~~~~~~v-d~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~L-------EePp~~tvfIL~t~ 159 (620)
T PRK14948 88 NALDVIEIDAASNTGV-DNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTL-------EEPPPRVVFVLATT 159 (620)
T ss_pred CCccEEEEeccccCCH-HHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHH-------hcCCcCeEEEEEeC
Confidence 11110 000111 1222222222 2455689999997653 233332222 33333455554444
Q ss_pred c-hhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHH
Q 037947 295 R-KDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVAT 359 (780)
Q Consensus 295 ~-~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 359 (780)
+ ..+..........+++.+++.++....+.+.+..... .--.+.+..|++.++|.+..+..+..
T Consensus 160 ~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi-~is~~al~~La~~s~G~lr~A~~lLe 224 (620)
T PRK14948 160 DPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI-EIEPEALTLVAQRSQGGLRDAESLLD 224 (620)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3 3333223345567889999999988887776642211 11235678999999998865554443
No 129
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1.6e-05 Score=55.90 Aligned_cols=37 Identities=32% Similarity=0.467 Sum_probs=19.9
Q ss_pred CccEEEecCCCCCCCCccccCCCCCCEEEccCccCCC
Q 037947 559 SLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGD 595 (780)
Q Consensus 559 ~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~ 595 (780)
+|++|++++|.++++|..+++|++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 4555666666665555555555555555555555444
No 130
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.85 E-value=0.00017 Score=79.30 Aligned_cols=182 Identities=15% Similarity=0.166 Sum_probs=106.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCC-eEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFD-EVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA 250 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 250 (780)
..-+.|+|++|+|||.|++.+++..... +.. .++|++. .++..++...+... +. ..+.+.+..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~----~~f~~~~~~ 193 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMKEG-----KL----NEFREKYRK 193 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHhcc-----cH----HHHHHHHHh
Confidence 3458999999999999999999987654 233 4566654 34556665555321 11 223334444
Q ss_pred CcEEEEEeCCCCccc---c-ccccCCcccccccccCCCCCcEEEEEecch-hHH----hh---hcCCcceEEcCCCChHH
Q 037947 251 SRVLVILDDVWNRLD---L-DAVGIPYKNYQNEIKDDRRRCAMLLTSRRK-DLL----YN---EMNSQKNFLINVLSDQE 318 (780)
Q Consensus 251 kr~LlVlDdv~~~~~---~-~~l~~~~~~~~~~l~~~~~~s~iivTtr~~-~v~----~~---~~~~~~~~~l~~L~~~~ 318 (780)
+.-+|++||+..... + +.+...+ +.+. ..|..||+||... .-. .. .......+++++.+.++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~----n~l~--~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~ 267 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTF----NELH--DSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEET 267 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHH----HHHH--HcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHH
Confidence 556899999975421 1 1111111 1112 2244688887532 211 11 12334578999999999
Q ss_pred HHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHH------hCC--ChhHHHHHHHHH
Q 037947 319 AVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATAL------RNK--SLFVWKDALLQL 376 (780)
Q Consensus 319 ~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L------~~~--~~~~w~~~~~~l 376 (780)
-.+++.+.+.... -.--+++...|++.+.|..-.+.-+-..| .++ +....++++..+
T Consensus 268 r~~IL~~~~~~~~-~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 268 RKKIARKMLEIEH-GELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLKDF 332 (440)
T ss_pred HHHHHHHHHHhcC-CCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 9999998875321 12234788889998888655443333222 122 666666666654
No 131
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.84 E-value=0.00032 Score=76.90 Aligned_cols=185 Identities=19% Similarity=0.177 Sum_probs=104.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASR 252 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 252 (780)
..+.|+|+.|+|||.|++.+++....+..-..++|++. .++...+...+... .. ..+.+.+++ .
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~-----~~----~~~~~~~~~-~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN-----KM----EEFKEKYRS-V 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC-----CH----HHHHHHHHh-C
Confidence 46889999999999999999998765421123556643 33444555444321 12 223333433 3
Q ss_pred EEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhHH--------hhhcCCcceEEcCCCChHHHHHHHH
Q 037947 253 VLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL--------YNEMNSQKNFLINVLSDQEAVQLFE 324 (780)
Q Consensus 253 ~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~--------~~~~~~~~~~~l~~L~~~~~~~Lf~ 324 (780)
-+|+|||+......+.....+-...+.+. ..+..+|+|+....-. ...+.....+.+++.+.++-.+++.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~--~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALH--ENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHH--HCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 48899999764321110000000011111 2345678877643211 1112233578999999999999999
Q ss_pred HhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHH------hCC--ChhHHHHHHHHH
Q 037947 325 KMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATAL------RNK--SLFVWKDALLQL 376 (780)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L------~~~--~~~~w~~~~~~l 376 (780)
+.+.... ..--+++...|++.+.|.+-.+.-+-..| .++ +.+..++++...
T Consensus 279 ~~~~~~~-~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 279 KKAEEEG-LELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEALKDL 337 (405)
T ss_pred HHHHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 9886322 22235788889999998876544332222 122 555666666654
No 132
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.84 E-value=0.00022 Score=84.96 Aligned_cols=162 Identities=15% Similarity=0.248 Sum_probs=91.7
Q ss_pred ccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCC---C-CeEEEEEEccCCCHHHHHHHHHH
Q 037947 150 YEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKL---F-DEVVMVVVSQKPDYKAIQNEIAG 225 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~~~~wv~vs~~~~~~~~~~~i~~ 225 (780)
..+++||+++++++++.|......-+.++|++|+|||++|+.++........ . +..+|. + +...++.
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l~a---- 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLLLA---- 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHHhc----
Confidence 4578999999999999998666666789999999999999999988653211 1 234442 1 1111111
Q ss_pred HcCCCcCCCCCHHHHHHHHHHHhc-cCcEEEEEeCCCCcccccc-ccC-CcccccccccC-CCCCcEEEEEecchhHH--
Q 037947 226 ALGLFLGEHEDVSERAHLLRQRLK-ASRVLVILDDVWNRLDLDA-VGI-PYKNYQNEIKD-DRRRCAMLLTSRRKDLL-- 299 (780)
Q Consensus 226 ~l~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~~~~~-l~~-~~~~~~~~l~~-~~~~s~iivTtr~~~v~-- 299 (780)
+.... .+.++..+.+.+.++ .++.+|++|++.....-.. -+. ..+.++. +. ....-++|.+|......
T Consensus 249 --g~~~~--ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLk--p~l~rg~l~~IgaTt~~ey~~~ 322 (821)
T CHL00095 249 --GTKYR--GEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILK--PALARGELQCIGATTLDEYRKH 322 (821)
T ss_pred --cCCCc--cHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhH--HHHhCCCcEEEEeCCHHHHHHH
Confidence 11111 113444444444443 4689999999854321000 000 0000000 11 12234566666554431
Q ss_pred ----hhhcCCcceEEcCCCChHHHHHHHHHh
Q 037947 300 ----YNEMNSQKNFLINVLSDQEAVQLFEKM 326 (780)
Q Consensus 300 ----~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 326 (780)
.........+.++..+.++...++...
T Consensus 323 ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 323 IEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 112233457888889999988887653
No 133
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.83 E-value=0.00011 Score=75.26 Aligned_cols=141 Identities=14% Similarity=0.204 Sum_probs=69.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA 250 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 250 (780)
...-+.++|++|+||||+|+.+++.......-....++.++.. ++.... ++ +....+.+.++.
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~----~l~~~~---~g----------~~~~~~~~~~~~ 103 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA----DLVGEY---IG----------HTAQKTREVIKK 103 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH----Hhhhhh---cc----------chHHHHHHHHHh
Confidence 3456789999999999999999987533221111223333221 111110 11 011122222221
Q ss_pred -CcEEEEEeCCCCccccc--cc-cCCcccccccccCCCCCcEEEEEecchhHH------hhhcCC-cceEEcCCCChHHH
Q 037947 251 -SRVLVILDDVWNRLDLD--AV-GIPYKNYQNEIKDDRRRCAMLLTSRRKDLL------YNEMNS-QKNFLINVLSDQEA 319 (780)
Q Consensus 251 -kr~LlVlDdv~~~~~~~--~l-~~~~~~~~~~l~~~~~~s~iivTtr~~~v~------~~~~~~-~~~~~l~~L~~~~~ 319 (780)
..-+|++|++.....-. .. ...+..+...+........+|+++...... ...... ...+++++++.++-
T Consensus 104 a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el 183 (261)
T TIGR02881 104 ALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEEL 183 (261)
T ss_pred ccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHH
Confidence 23589999997642100 00 000011111112233334555555443220 011122 24688999999999
Q ss_pred HHHHHHhhC
Q 037947 320 VQLFEKMSG 328 (780)
Q Consensus 320 ~~Lf~~~~~ 328 (780)
.+++.+.+.
T Consensus 184 ~~Il~~~~~ 192 (261)
T TIGR02881 184 MEIAERMVK 192 (261)
T ss_pred HHHHHHHHH
Confidence 999887764
No 134
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.83 E-value=0.0003 Score=80.00 Aligned_cols=197 Identities=13% Similarity=0.145 Sum_probs=108.7
Q ss_pred CCccccCCchHHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
....+++|.+...+.|.+++..++.. .+.++|+.|+||||+|+.+++..--....+. ..++.-..-..|...
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~g 85 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITEG 85 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhcC
Confidence 45667899999999999998877664 5689999999999999999887532211100 000000000111000
Q ss_pred cCCC-----cCCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCccc--cccccCCcccccccccCCCCCcEEEE-Ee
Q 037947 227 LGLF-----LGEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRRRCAMLL-TS 293 (780)
Q Consensus 227 l~~~-----~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~~s~iiv-Tt 293 (780)
-..+ .......+ .++.+.+.+ .+++-++|+|++..... .+.+...+ ......+.+|+ ||
T Consensus 86 ~~~d~~eid~~s~~~v~-~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~L-------Eepp~~~~fIl~t~ 157 (576)
T PRK14965 86 RSVDVFEIDGASNTGVD-DIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTL-------EEPPPHVKFIFATT 157 (576)
T ss_pred CCCCeeeeeccCccCHH-HHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHH-------HcCCCCeEEEEEeC
Confidence 0000 00000011 122222222 23555899999966532 22232222 33334556555 44
Q ss_pred cchhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChH-HHHHHHHH
Q 037947 294 RRKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPV-AITTVATA 360 (780)
Q Consensus 294 r~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~~~ 360 (780)
....+..........+++.+++.++....+...+.... ..--.+....|++.++|..- |+..+-.+
T Consensus 158 ~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg-i~i~~~al~~la~~a~G~lr~al~~Ldql 224 (576)
T PRK14965 158 EPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG-ISISDAALALVARKGDGSMRDSLSTLDQV 224 (576)
T ss_pred ChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 44445433344567889999999998888876654221 11223667789999999764 44444333
No 135
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00061 Score=76.77 Aligned_cols=194 Identities=14% Similarity=0.130 Sum_probs=110.3
Q ss_pred CCccccCCchHHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
....+++|-+..++.|..++..++.. .+.++|+.|+||||+|+.+++..--...... ..++.+.+-. .|...
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C~----~i~~~ 85 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSCK----SIDND 85 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHHH----HHHcC
Confidence 44567899999999999999876654 6889999999999999999987642211100 0011111111 11100
Q ss_pred cCCC---cC--CCCCHHHHHHHHHHH-----hccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEec
Q 037947 227 LGLF---LG--EHEDVSERAHLLRQR-----LKASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSR 294 (780)
Q Consensus 227 l~~~---~~--~~~~~~~~~~~l~~~-----L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr 294 (780)
-... .. .....++. +.+.+. ..+++-++|+|++.... .++.+...+ ......+.+|++|.
T Consensus 86 ~~~dv~~idgas~~~vddI-r~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~L-------Eepp~~~vfI~~tt 157 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQDV-RQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTI-------EEPPPYIVFIFATT 157 (563)
T ss_pred CCCCeEEecCcccCCHHHH-HHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhh-------ccCCCCEEEEEecC
Confidence 0000 00 00111111 122211 23466689999986653 234443333 33344556655554
Q ss_pred c-hhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHH
Q 037947 295 R-KDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTV 357 (780)
Q Consensus 295 ~-~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 357 (780)
. ..+..........++..+++.++..+.+.+.+.... ..--.+.+..|++.++|.+-.+..+
T Consensus 158 e~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg-i~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 158 EVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ-IKYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred ChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 3 333322344556799999999999888887664222 2223467788999999988654443
No 136
>CHL00181 cbbX CbbX; Provisional
Probab=97.82 E-value=0.00042 Score=71.53 Aligned_cols=138 Identities=12% Similarity=0.172 Sum_probs=72.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASR 252 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 252 (780)
..+.++|++|+||||+|+.+++.......-...-|+.++. .++..... +. . .......+.. . ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~~---g~-----~-~~~~~~~l~~-a--~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQYI---GH-----T-APKTKEVLKK-A--MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHHh---cc-----c-hHHHHHHHHH-c--cC
Confidence 3588999999999999999988764332222222455542 22222221 10 0 1111111221 1 33
Q ss_pred EEEEEeCCCCcc------ccccccCCcccccccccCCCCCcEEEEEecchhHHh------hhc-CCcceEEcCCCChHHH
Q 037947 253 VLVILDDVWNRL------DLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLLY------NEM-NSQKNFLINVLSDQEA 319 (780)
Q Consensus 253 ~LlVlDdv~~~~------~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~~------~~~-~~~~~~~l~~L~~~~~ 319 (780)
-+|+||++.... ++.. .....+...+.+...+..||+++....... ... .....+.+++++.++.
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~--e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGS--EAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred CEEEEEccchhccCCCccchHH--HHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 599999996531 1110 000001111133345567777775443210 001 1234789999999999
Q ss_pred HHHHHHhhC
Q 037947 320 VQLFEKMSG 328 (780)
Q Consensus 320 ~~Lf~~~~~ 328 (780)
.+++...+.
T Consensus 202 ~~I~~~~l~ 210 (287)
T CHL00181 202 LQIAKIMLE 210 (287)
T ss_pred HHHHHHHHH
Confidence 998887764
No 137
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.80 E-value=0.00018 Score=74.20 Aligned_cols=136 Identities=14% Similarity=0.156 Sum_probs=71.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc-Cc
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA-SR 252 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~-kr 252 (780)
-+.++|++|+||||+|+.+++...........-|+.++. .++...+ .+. . .. .+.+.++. ..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~~~~---~g~-----~-~~----~~~~~~~~a~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLVGQY---IGH-----T-AP----KTKEILKRAMG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHhHhh---ccc-----c-hH----HHHHHHHHccC
Confidence 588999999999999998888765433222223554442 2222211 111 1 11 12222221 34
Q ss_pred EEEEEeCCCCcc------ccccccCCcccccccccCCCCCcEEEEEecchhHHh-h-----hc-CCcceEEcCCCChHHH
Q 037947 253 VLVILDDVWNRL------DLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLLY-N-----EM-NSQKNFLINVLSDQEA 319 (780)
Q Consensus 253 ~LlVlDdv~~~~------~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~~-~-----~~-~~~~~~~l~~L~~~~~ 319 (780)
-+|+||++.... .+.. .....+.+.+.....+.+||+++....... . .. .....+++++++.+|-
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~--~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQ--EAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred cEEEEechhhhccCCCccchHH--HHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 699999996431 1111 000011122233445666777765432210 0 00 1135689999999999
Q ss_pred HHHHHHhhC
Q 037947 320 VQLFEKMSG 328 (780)
Q Consensus 320 ~~Lf~~~~~ 328 (780)
.+++.+.+.
T Consensus 201 ~~I~~~~l~ 209 (284)
T TIGR02880 201 LVIAGLMLK 209 (284)
T ss_pred HHHHHHHHH
Confidence 999887764
No 138
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.78 E-value=0.0002 Score=76.62 Aligned_cols=108 Identities=19% Similarity=0.227 Sum_probs=73.5
Q ss_pred cccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCC
Q 037947 151 EQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLF 230 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 230 (780)
.++++.+..++.++..|... +.|.++|++|+|||++|+.+++.......|+.+.||++++..+..+++..+.-. +..
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~-~vg 251 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPN-GVG 251 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCC-CCC
Confidence 34667888999999988753 468889999999999999999988766678889999999998888776533110 000
Q ss_pred cCCCCCHHHHHHHHHHHhc--cCcEEEEEeCCCCc
Q 037947 231 LGEHEDVSERAHLLRQRLK--ASRVLVILDDVWNR 263 (780)
Q Consensus 231 ~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~ 263 (780)
..... .-..+.+...-. ++++++|+|++...
T Consensus 252 y~~~~--G~f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 252 FRRKD--GIFYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred eEecC--chHHHHHHHHHhcccCCcEEEEehhhcc
Confidence 00000 001111222222 37899999999655
No 139
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.77 E-value=0.00043 Score=76.84 Aligned_cols=181 Identities=20% Similarity=0.195 Sum_probs=105.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASR 252 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 252 (780)
.-+.|+|++|+|||+|++.+++.......-..++|++.. ++...+...+... ....+.+.++ +.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~---------~~~~~~~~~~-~~ 212 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN---------TMEEFKEKYR-SV 212 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC---------cHHHHHHHHh-cC
Confidence 568999999999999999999987654212235565443 3334444443211 1123334444 34
Q ss_pred EEEEEeCCCCccc---c-ccccCCcccccccccCCCCCcEEEEEecchhHH--------hhhcCCcceEEcCCCChHHHH
Q 037947 253 VLVILDDVWNRLD---L-DAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL--------YNEMNSQKNFLINVLSDQEAV 320 (780)
Q Consensus 253 ~LlVlDdv~~~~~---~-~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~--------~~~~~~~~~~~l~~L~~~~~~ 320 (780)
-+|||||+..... + +.+...+ +.+.. .|..||+|+....-. .........+++++.+.++-.
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~----n~l~~--~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~ 286 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTF----NALHE--AGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRI 286 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHH----HHHHH--CCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHH
Confidence 4899999965421 1 1111111 11111 244577777654211 112334457999999999999
Q ss_pred HHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHH------hCC--ChhHHHHHHHHH
Q 037947 321 QLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATAL------RNK--SLFVWKDALLQL 376 (780)
Q Consensus 321 ~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L------~~~--~~~~w~~~~~~l 376 (780)
+++.+.+... ...--+++...|++.+.|..-.+.-+-..+ .++ +....++++..+
T Consensus 287 ~il~~~~~~~-~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 287 AILKKKAEEE-GIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 9999988532 222234788899999998876543332222 122 666777777765
No 140
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.75 E-value=0.00094 Score=75.58 Aligned_cols=193 Identities=16% Similarity=0.117 Sum_probs=107.9
Q ss_pred CCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
....+++|.+...+.+.+++..++. ..+.++|+.|+||||+|+.+.+..-....-+. ..++.-..-+.|...
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~~g 85 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAITNG 85 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHhcC
Confidence 4567899999999999999986654 45778999999999999999876532211000 000100111111111
Q ss_pred cCCCc-----CCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEE-Ee
Q 037947 227 LGLFL-----GEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLL-TS 293 (780)
Q Consensus 227 l~~~~-----~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iiv-Tt 293 (780)
...+. .... ..+.++.+.+.. .++.-++|+|++.... .+..+...+ ......+.+|+ ||
T Consensus 86 ~~~dv~eidaas~~-~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtL-------Eepp~~~ifIlatt 157 (559)
T PRK05563 86 SLMDVIEIDAASNN-GVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTL-------EEPPAHVIFILATT 157 (559)
T ss_pred CCCCeEEeeccccC-CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHh-------cCCCCCeEEEEEeC
Confidence 10000 0001 111222333332 3456689999997653 233332222 22233445454 44
Q ss_pred cchhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHH
Q 037947 294 RRKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITT 356 (780)
Q Consensus 294 r~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 356 (780)
....+..........++..+++.++..+.+...+..... .--.+....|++.++|.+..+..
T Consensus 158 ~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi-~i~~~al~~ia~~s~G~~R~al~ 219 (559)
T PRK05563 158 EPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI-EYEDEALRLIARAAEGGMRDALS 219 (559)
T ss_pred ChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHH
Confidence 444443333344567899999999998888876642221 11236677889999998865443
No 141
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.75 E-value=3.6e-06 Score=92.56 Aligned_cols=170 Identities=21% Similarity=0.278 Sum_probs=96.6
Q ss_pred CceEEEccCCCCccCCC-ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccC
Q 037947 512 DPIAISLPCRDIQELPE-RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFEC 590 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 590 (780)
....+.+..|.+..+.. ...+++|++|++++|.+....+ +..++.|+.|++.+|.++.++ .+..+.+|+.+++++
T Consensus 96 ~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 96 SLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLSY 171 (414)
T ss_pred ceeeeeccccchhhcccchhhhhcchheeccccccccccc---hhhccchhhheeccCcchhcc-CCccchhhhcccCCc
Confidence 35666666666666665 4456677777777766653322 234555667777777666543 234466667777777
Q ss_pred ccCCCccc--ccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcc--cceeeccCCCCccc
Q 037947 591 CVLGDVAT--VGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPR--LEELYMGNSFTHWE 666 (780)
Q Consensus 591 ~~~~~~~~--i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~--L~~L~l~~~~~~~~ 666 (780)
|.+..+.. ...+.+|+.+++.+|.+..+. .+..+..+..+++.. +.+..+-+ +..+.. |+.+++.+|....
T Consensus 172 n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~-n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~- 246 (414)
T KOG0531|consen 172 NRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLD-NKISKLEG--LNELVMLHLRELYLSGNRISR- 246 (414)
T ss_pred chhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhccc-ccceeccC--cccchhHHHHHHhcccCcccc-
Confidence 66666544 466666666666666555432 133333344444444 34433311 233333 7788887774311
Q ss_pred cccCCccchhhhcCCCCCCEEEeeccCCCCC
Q 037947 667 IEGQNNASLAELNQLSRLTTLEMHILDAQVM 697 (780)
Q Consensus 667 ~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~ 697 (780)
....+..+.++..|++..+.+...
T Consensus 247 -------~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 247 -------SPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred -------ccccccccccccccchhhcccccc
Confidence 104566677788888877765543
No 142
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.74 E-value=0.00061 Score=81.46 Aligned_cols=160 Identities=13% Similarity=0.216 Sum_probs=91.7
Q ss_pred CccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCC----CeEEE-EEEccCCCHHHHHHHH
Q 037947 149 GYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLF----DEVVM-VVVSQKPDYKAIQNEI 223 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~w-v~vs~~~~~~~~~~~i 223 (780)
..++++||+.++++++..|......-+.++|++|+|||++|+.++......... ...+| +.+ ..+..
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~------~~l~a-- 242 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDM------GALIA-- 242 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeH------HHHhh--
Confidence 346789999999999999987666677799999999999999999886443111 22233 221 11110
Q ss_pred HHHcCCCcCCCCCHHHHHHHHHHHhc--cCcEEEEEeCCCCccccc------cccCCcccccccccCCCCCcEEEEEecc
Q 037947 224 AGALGLFLGEHEDVSERAHLLRQRLK--ASRVLVILDDVWNRLDLD------AVGIPYKNYQNEIKDDRRRCAMLLTSRR 295 (780)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~~------~l~~~~~~~~~~l~~~~~~s~iivTtr~ 295 (780)
+.... .+.+.....+.+.+. +++.+|++|++.....-. +....+. .. . ....-++|.+|..
T Consensus 243 ----~~~~~--g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk---~~-l-~~g~i~~IgaTt~ 311 (852)
T TIGR03346 243 ----GAKYR--GEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLK---PA-L-ARGELHCIGATTL 311 (852)
T ss_pred ----cchhh--hhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhc---hh-h-hcCceEEEEeCcH
Confidence 00000 113334444444443 368999999986542100 0000110 00 1 1223455555554
Q ss_pred hhHH------hhhcCCcceEEcCCCChHHHHHHHHHhh
Q 037947 296 KDLL------YNEMNSQKNFLINVLSDQEAVQLFEKMS 327 (780)
Q Consensus 296 ~~v~------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 327 (780)
...- .........+.++..+.++..+++....
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 4321 1122344568899999999999887654
No 143
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.73 E-value=0.00024 Score=78.30 Aligned_cols=165 Identities=18% Similarity=0.230 Sum_probs=90.7
Q ss_pred ccccCCchHHHHHHHHHHcc-------------CCccEEEEEcCCCChHHHHHHHHHHHHhccCC---CCeEEEEEEccC
Q 037947 150 YEQFESRMPTFQDIMEALKD-------------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKL---FDEVVMVVVSQK 213 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~~wv~vs~~ 213 (780)
..++.|.+..++++.+.+.- ...+-+.++|++|+|||++|+.+++....... +....|+++...
T Consensus 181 ~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~ 260 (512)
T TIGR03689 181 YADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP 260 (512)
T ss_pred HHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch
Confidence 45677888888888877531 23456899999999999999999998753311 123445554432
Q ss_pred CCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCccccc------ccc-CCccccccccc
Q 037947 214 PDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRLDLD------AVG-IPYKNYQNEIK 281 (780)
Q Consensus 214 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~~~------~l~-~~~~~~~~~l~ 281 (780)
+++.. . ... .+...+.+.+.. .+++.+|+||+++....-. ... ..+..++..+.
T Consensus 261 ----eLl~k----y----vGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 261 ----ELLNK----Y----VGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred ----hhccc----c----cch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 11111 0 000 111122222222 2478999999997542100 000 00001111111
Q ss_pred --CCCCCcEEEEEecchhHHhhh-c---CCcceEEcCCCChHHHHHHHHHhhC
Q 037947 282 --DDRRRCAMLLTSRRKDLLYNE-M---NSQKNFLINVLSDQEAVQLFEKMSG 328 (780)
Q Consensus 282 --~~~~~s~iivTtr~~~v~~~~-~---~~~~~~~l~~L~~~~~~~Lf~~~~~ 328 (780)
....+..||.||......... . .-...+++++.+.++..++|.++..
T Consensus 327 gl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 327 GVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred ccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 112345566677665432111 1 2234689999999999999998874
No 144
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.71 E-value=1.3e-06 Score=95.14 Aligned_cols=126 Identities=23% Similarity=0.269 Sum_probs=70.9
Q ss_pred ccEEEecCCCCCCCCccccCCCCCCEEEccCccCCCcccccccCCCcEEEeecCCCCccCh-hhcCCCCCCEEecCCCCC
Q 037947 560 LQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQLPE-EIGQLTRLKLLDLSNCSK 638 (780)
Q Consensus 560 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~ 638 (780)
|.+.+.++|.+..+-.++.-+++|+.|+|+.|++.....+..|.+|++|||+.|.++.+|. +... ..|+.|.+++ |.
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~g-c~L~~L~lrn-N~ 243 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVG-CKLQLLNLRN-NA 243 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhh-hhheeeeecc-cH
Confidence 3444444555544445555566666777777666666666666666677776666666665 1122 2366666665 55
Q ss_pred CcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCC
Q 037947 639 LKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQ 695 (780)
Q Consensus 639 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 695 (780)
++.+ ..+.+|.+|+.|++++|.+. .-..+..|..|..|+.|.+.+|.+.
T Consensus 244 l~tL--~gie~LksL~~LDlsyNll~------~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 244 LTTL--RGIENLKSLYGLDLSYNLLS------EHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred HHhh--hhHHhhhhhhccchhHhhhh------cchhhhHHHHHHHHHHHhhcCCccc
Confidence 5555 22566666666666666331 1122333444555666666666543
No 145
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.71 E-value=0.00067 Score=73.66 Aligned_cols=180 Identities=18% Similarity=0.227 Sum_probs=96.3
Q ss_pred CccccCCchHHHHHHHHHHc----c---------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC
Q 037947 149 GYEQFESRMPTFQDIMEALK----D---------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD 215 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (780)
.+.++.|.+..++++.+.+. . ...+-|.++|++|+|||++|+.+++..... | +.+...
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~--f-----i~V~~s-- 251 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSAT--F-----LRVVGS-- 251 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCC--E-----EEEecc--
Confidence 34566788888888877663 1 234578899999999999999999976432 3 222211
Q ss_pred HHHHHHHHHHHcCCCcCCCCCHHHHHHHH-HHHhccCcEEEEEeCCCCccccc--c-------ccCCccccccccc--CC
Q 037947 216 YKAIQNEIAGALGLFLGEHEDVSERAHLL-RQRLKASRVLVILDDVWNRLDLD--A-------VGIPYKNYQNEIK--DD 283 (780)
Q Consensus 216 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~L~~kr~LlVlDdv~~~~~~~--~-------l~~~~~~~~~~l~--~~ 283 (780)
++.... .+ . .......+ .....+.+.+|+||+++....-. . +...+..++..+. ..
T Consensus 252 --eL~~k~---~G------e-~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~ 319 (438)
T PTZ00361 252 --ELIQKY---LG------D-GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS 319 (438)
T ss_pred --hhhhhh---cc------h-HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc
Confidence 111110 00 0 11112222 22224578899999985431100 0 0000000111111 12
Q ss_pred CCCcEEEEEecchhHHhhhc----CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 284 RRRCAMLLTSRRKDLLYNEM----NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 284 ~~~s~iivTtr~~~v~~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
..+..||+||.......... .-...+++++.+.++..++|..++......++. ....++..+.|.-
T Consensus 320 ~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~s 389 (438)
T PTZ00361 320 RGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDELS 389 (438)
T ss_pred cCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCCC
Confidence 34567888887665442221 224578999999999999999877532222111 1234555555543
No 146
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.71 E-value=1.9e-05 Score=90.58 Aligned_cols=124 Identities=20% Similarity=0.266 Sum_probs=68.5
Q ss_pred CCceEEEccCCCCc--cCCCc--cCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEE
Q 037947 511 KDPIAISLPCRDIQ--ELPER--LECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTL 586 (780)
Q Consensus 511 ~~~~~l~l~~~~~~--~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 586 (780)
...++|.+.+...- ..+.. ..+|.|++|.+.+-.+...--...+.++++|+.||+++++++.+ ..|++|+||+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 34677777653321 11111 25677777777665443222223345667777777777776665 566667777777
Q ss_pred EccCccCCC---cccccccCCCcEEEeecCCCCccCh-------hhcCCCCCCEEecCC
Q 037947 587 SFECCVLGD---VATVGALKKLVILSFRNSHIEQLPE-------EIGQLTRLKLLDLSN 635 (780)
Q Consensus 587 ~L~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~-------~i~~l~~L~~L~l~~ 635 (780)
.+.+=.+.. +..+.+|++|+.||++......-|. .-..|++||.||.++
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 666655443 4556666777777776553332221 112356666666665
No 147
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.70 E-value=0.00054 Score=75.10 Aligned_cols=158 Identities=12% Similarity=0.090 Sum_probs=90.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASR 252 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 252 (780)
.-+.|+|+.|+|||+|++.+++..... ...+++++. .++...+...+... ....++..+. +.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~---------~~~~f~~~~~-~~ 203 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG---------EMQRFRQFYR-NV 203 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc---------hHHHHHHHcc-cC
Confidence 568899999999999999999987643 233455543 34444555444310 1122333333 34
Q ss_pred EEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhHH--------hhhcCCcceEEcCCCChHHHHHHHH
Q 037947 253 VLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL--------YNEMNSQKNFLINVLSDQEAVQLFE 324 (780)
Q Consensus 253 ~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~--------~~~~~~~~~~~l~~L~~~~~~~Lf~ 324 (780)
-+|++||+............+-...+.+.. .|..||+||...... ......+..+++++++.++-.+++.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~--~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHT--EGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHH--CCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 488899986653211100011011111111 345688887543211 1112334689999999999999999
Q ss_pred HhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 325 KMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
+++.... ..--+++..-|++.+.|.-
T Consensus 282 ~k~~~~~-~~l~~evl~~la~~~~~di 307 (445)
T PRK12422 282 RKAEALS-IRIEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHcC-CCCCHHHHHHHHHhcCCCH
Confidence 8875321 2223466777777777544
No 148
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.70 E-value=0.0014 Score=68.54 Aligned_cols=195 Identities=15% Similarity=0.131 Sum_probs=111.7
Q ss_pred cccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccC-------------CCCeEEEEEEccCCCH
Q 037947 151 EQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDK-------------LFDEVVMVVVSQKPDY 216 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~-------------~F~~~~wv~vs~~~~~ 216 (780)
.+++|.+...+.+...+..+++ ....++|+.|+||+++|..+.+..--.. ...-..|+.-.....-
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g 83 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQG 83 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccc
Confidence 4678999999999999987775 7899999999999999999988753221 1112234322100000
Q ss_pred HHHHHHHHHHcCC--CcCCCCCHHHHHHHHHHHhc-----cCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCc
Q 037947 217 KAIQNEIAGALGL--FLGEHEDVSERAHLLRQRLK-----ASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRC 287 (780)
Q Consensus 217 ~~~~~~i~~~l~~--~~~~~~~~~~~~~~l~~~L~-----~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s 287 (780)
..+-..-++..+. .....- ..+.++.+.+.+. +.+-++|+|+++... ..+.+...+ .... .+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~I-~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~L-------EEPp-~~ 154 (314)
T PRK07399 84 KLITASEAEEAGLKRKAPPQI-RLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTL-------EEPG-NG 154 (314)
T ss_pred cccchhhhhhccccccccccC-cHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHH-------hCCC-CC
Confidence 0000011111110 000000 1122344555543 466799999986653 223332222 2222 33
Q ss_pred EEEEEe-cchhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHH
Q 037947 288 AMLLTS-RRKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVA 358 (780)
Q Consensus 288 ~iivTt-r~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 358 (780)
.+|++| ....+..........+++.+++.++..+.+.+...... .......++..++|.|..+....
T Consensus 155 ~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 155 TLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI----LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred eEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc----chhHHHHHHHHcCCCHHHHHHHH
Confidence 455444 44444444456678999999999999999988653211 11123578999999997665543
No 149
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.67 E-value=0.00034 Score=75.70 Aligned_cols=165 Identities=19% Similarity=0.231 Sum_probs=95.4
Q ss_pred chHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCC
Q 037947 156 RMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHE 235 (780)
Q Consensus 156 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 235 (780)
|..-..++++.+..... ++.|.|+-++||||+++.+....... .++++..+...-..-+.+..
T Consensus 22 ~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~----------- 84 (398)
T COG1373 22 RRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLL----------- 84 (398)
T ss_pred HHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHH-----------
Confidence 33445556665544333 99999999999999996666554322 55555443221111111111
Q ss_pred CHHHHHHHHHHHhccCcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhHH-----hhhcCCcceEE
Q 037947 236 DVSERAHLLRQRLKASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL-----YNEMNSQKNFL 310 (780)
Q Consensus 236 ~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~-----~~~~~~~~~~~ 310 (780)
..+...-..++..|+||.|.....|+.....+ .+..+. +|++|+-+.... ....+....++
T Consensus 85 ------~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l-------~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~ 150 (398)
T COG1373 85 ------RAYIELKEREKSYIFLDEIQNVPDWERALKYL-------YDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLE 150 (398)
T ss_pred ------HHHHHhhccCCceEEEecccCchhHHHHHHHH-------Hccccc-eEEEECCchhhhccchhhhcCCCceeEE
Confidence 11111111277899999999999998755444 555555 888888776553 22234566899
Q ss_pred cCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHH
Q 037947 311 INVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITT 356 (780)
Q Consensus 311 l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 356 (780)
+.||+..|-..+-... ........ .-.-.-..||.|-++..
T Consensus 151 l~PlSF~Efl~~~~~~----~~~~~~~~-~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 151 LYPLSFREFLKLKGEE----IEPSKLEL-LFEKYLETGGFPESVKA 191 (398)
T ss_pred ECCCCHHHHHhhcccc----cchhHHHH-HHHHHHHhCCCcHHHhC
Confidence 9999999876653200 00001111 22223356888887654
No 150
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=3e-06 Score=83.06 Aligned_cols=170 Identities=23% Similarity=0.223 Sum_probs=98.9
Q ss_pred ceEEEccCCCCcc--CCCcc-CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCC-CCCC--CccccCCCCCCEE
Q 037947 513 PIAISLPCRDIQE--LPERL-ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFH-FPSL--PSTLGCLINLQTL 586 (780)
Q Consensus 513 ~~~l~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~l--p~~i~~l~~L~~L 586 (780)
+.++.+++..++. +.... .|.+|+.|.+.++.....+...+ .+-..|+.|+|+.|+ +++. ---+.++..|..|
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5556665544431 22222 67778888887777765555443 455778888888765 4421 1234567778888
Q ss_pred EccCccCCCc------ccccccCCCcEEEeecCC----CCccChhhcCCCCCCEEecCCCCCCcccCccccCCCccccee
Q 037947 587 SFECCVLGDV------ATVGALKKLVILSFRNSH----IEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEEL 656 (780)
Q Consensus 587 ~L~~~~~~~~------~~i~~l~~L~~L~l~~~~----l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 656 (780)
+|++|.+..+ ..|+ .+|..|+++|+. ...+.--..+.++|.+||+++|..++.-....+.+++.|++|
T Consensus 266 NlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred CchHhhccchhhhHHHhhhc--hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 8888876542 2222 456677777762 122333345667777777777666554323345666777777
Q ss_pred eccCCCCccccccCCccchhhhcCCCCCCEEEeec
Q 037947 657 YMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHI 691 (780)
Q Consensus 657 ~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~ 691 (780)
.++.|.. -.+..+-+++..+.|..|++.+
T Consensus 344 SlsRCY~------i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 344 SLSRCYD------IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred ehhhhcC------CChHHeeeeccCcceEEEEecc
Confidence 7776642 1233445566666666666654
No 151
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.65 E-value=0.0018 Score=63.43 Aligned_cols=53 Identities=17% Similarity=0.251 Sum_probs=42.0
Q ss_pred CCccccCCchHHHHHHHHHH----ccCCccEEEEEcCCCChHHHHHHHHHHHHhccC
Q 037947 148 RGYEQFESRMPTFQDIMEAL----KDDNINVIGIYGIGGVGKTTLVKQVARRVMEDK 200 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L----~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~ 200 (780)
...+.++|.+.+++.|++-. ......-|.++|..|+|||++++.+.+....+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G 80 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG 80 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence 44567889998888877643 345566788999999999999999999887653
No 152
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.64 E-value=0.00089 Score=72.22 Aligned_cols=180 Identities=17% Similarity=0.212 Sum_probs=95.8
Q ss_pred CccccCCchHHHHHHHHHHc----c---------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC
Q 037947 149 GYEQFESRMPTFQDIMEALK----D---------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD 215 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (780)
...++.|-+..+++|.+.+. . ...+-|.++|++|+|||++|+.+++..... | +.+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~--f-----i~i~~--- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTAT--F-----IRVVG--- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEeh---
Confidence 34567788888777776653 1 235779999999999999999999875322 2 22211
Q ss_pred HHHHHHHHHHHcCCCcCCCCCHHHHHHHHHH-HhccCcEEEEEeCCCCccc--------cc-cccCCccccccccc--CC
Q 037947 216 YKAIQNEIAGALGLFLGEHEDVSERAHLLRQ-RLKASRVLVILDDVWNRLD--------LD-AVGIPYKNYQNEIK--DD 283 (780)
Q Consensus 216 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~~--------~~-~l~~~~~~~~~~l~--~~ 283 (780)
..+.... ++ . .....+.+.. .....+.+|+||+++.... .+ .+...+..++..+. ..
T Consensus 213 -s~l~~k~---~g------e-~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~ 281 (398)
T PTZ00454 213 -SEFVQKY---LG------E-GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ 281 (398)
T ss_pred -HHHHHHh---cc------h-hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC
Confidence 1111111 11 0 1112222222 2345789999999865310 00 00000111111111 12
Q ss_pred CCCcEEEEEecchhHHhh-hc---CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 284 RRRCAMLLTSRRKDLLYN-EM---NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 284 ~~~s~iivTtr~~~v~~~-~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
..+..||+||........ .. .-...++++..+.++..++|..........++. ...++++.+.|.-
T Consensus 282 ~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 282 TTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred CCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 345678888876554311 12 123568888888888888887766432222211 1345566666654
No 153
>PRK06620 hypothetical protein; Validated
Probab=97.64 E-value=0.00022 Score=70.26 Aligned_cols=138 Identities=19% Similarity=0.057 Sum_probs=80.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASR 252 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 252 (780)
+.+.|+|++|+|||+|++.+++.... .++. ..... . +.. +..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~~---------------------~-------~~~-~~~ 86 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFFN---------------------E-------EIL-EKY 86 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhhc---------------------h-------hHH-hcC
Confidence 56899999999999999987765421 1211 00000 0 011 233
Q ss_pred EEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhHH------hhhcCCcceEEcCCCChHHHHHHHHHh
Q 037947 253 VLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL------YNEMNSQKNFLINVLSDQEAVQLFEKM 326 (780)
Q Consensus 253 ~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~------~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 326 (780)
-++++||+....+ ..+. .+.+.+. ..|..||+|++..... ...+....++++++++.++-..++.+.
T Consensus 87 d~lliDdi~~~~~-~~lf----~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~ 159 (214)
T PRK06620 87 NAFIIEDIENWQE-PALL----HIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKH 159 (214)
T ss_pred CEEEEeccccchH-HHHH----HHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHH
Confidence 5789999963321 0111 1111112 3456889988754321 112334458999999999988888877
Q ss_pred hCCCCCCCChhHHHHHHHHHhCCChHHHHH
Q 037947 327 SGVFEGPLDFQNLAIKIARECGGLPVAITT 356 (780)
Q Consensus 327 ~~~~~~~~~~~~~~~~i~~~c~GlPLai~~ 356 (780)
+... .-.--+++.+-|++.+.|.--.+.-
T Consensus 160 ~~~~-~l~l~~ev~~~L~~~~~~d~r~l~~ 188 (214)
T PRK06620 160 FSIS-SVTISRQIIDFLLVNLPREYSKIIE 188 (214)
T ss_pred HHHc-CCCCCHHHHHHHHHHccCCHHHHHH
Confidence 6421 1222347788888888776554433
No 154
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.63 E-value=0.00097 Score=70.05 Aligned_cols=151 Identities=15% Similarity=0.174 Sum_probs=89.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccC--------------------CCCeEEEEEEc---cCCCHHHHHHHHHHHcC
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDK--------------------LFDEVVMVVVS---QKPDYKAIQNEIAGALG 228 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs---~~~~~~~~~~~i~~~l~ 228 (780)
...+.++|+.|+||||+|..+++..--.. |.| ..|+.-. +...+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~~~i~i------------ 88 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEADKTIKV------------ 88 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCCCCCCH------------
Confidence 35688999999999999999988764321 111 1222111 01111
Q ss_pred CCcCCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEecchh-HHh
Q 037947 229 LFLGEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKD-LLY 300 (780)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~-v~~ 300 (780)
+.++.+.+.+ .+++-++|+|+++... ..+.+...+ .....++.+|+||.+.. +..
T Consensus 89 ----------d~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~L-------EEPp~~~~fiL~t~~~~~ll~ 151 (328)
T PRK05707 89 ----------DQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSL-------EEPSGDTVLLLISHQPSRLLP 151 (328)
T ss_pred ----------HHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHH-------hCCCCCeEEEEEECChhhCcH
Confidence 1222233333 2345566789997663 233332222 33335667777776654 333
Q ss_pred hhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHH
Q 037947 301 NEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTV 357 (780)
Q Consensus 301 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 357 (780)
........+++.+++.+++.+.+...... ...+.+..++..++|.|..+..+
T Consensus 152 TI~SRc~~~~~~~~~~~~~~~~L~~~~~~-----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 152 TIKSRCQQQACPLPSNEESLQWLQQALPE-----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHhhceeeeCCCcCHHHHHHHHHHhccc-----CChHHHHHHHHHcCCCHHHHHHH
Confidence 44455678999999999999988765411 11244567889999999765443
No 155
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.61 E-value=1e-05 Score=81.45 Aligned_cols=181 Identities=18% Similarity=0.188 Sum_probs=110.4
Q ss_pred CCCCccEEEeccCccccccCc---hhhcCCCCccEEEecCCCCCC--------------CCccccCCCCCCEEEccCccC
Q 037947 531 ECPKLKLFFLFSKKLSLVIPD---LFFEGVPSLQVLSLNGFHFPS--------------LPSTLGCLINLQTLSFECCVL 593 (780)
Q Consensus 531 ~~~~L~~L~l~~~~~~~~~~~---~~~~~l~~Lr~L~l~~~~~~~--------------lp~~i~~l~~L~~L~L~~~~~ 593 (780)
.|++|++|+||+|-+....+. .++.++..|+.|.|.+|++.. ..+.+.+-+.||++...+|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 677888888888877644333 335667888888888887642 122345567788888888887
Q ss_pred CC-c-----ccccccCCCcEEEeecCCCC-----ccChhhcCCCCCCEEecCCCCCCcccC----ccccCCCcccceeec
Q 037947 594 GD-V-----ATVGALKKLVILSFRNSHIE-----QLPEEIGQLTRLKLLDLSNCSKLKSIR----PNVISNLPRLEELYM 658 (780)
Q Consensus 594 ~~-~-----~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~l~~L~~L~l~~~~~l~~~~----~~~l~~l~~L~~L~l 658 (780)
.+ + ..+...+.|+.+.+..|.|. -+-..+..+++|+.|++.+ |.++... ...++.+++|++|++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeecc
Confidence 65 2 24556677888888777554 2344667788888888887 4443221 223566778888888
Q ss_pred cCCCCccccccCCccchhhh-cCCCCCCEEEeeccCCCCCCccc------cccCccEEEEEecC
Q 037947 659 GNSFTHWEIEGQNNASLAEL-NQLSRLTTLEMHILDAQVMPREL------FSVGLERYKIFLGD 715 (780)
Q Consensus 659 ~~~~~~~~~~~~~~~~l~~l-~~L~~L~~L~l~~~~~~~~~~~~------~~~~L~~L~i~~~~ 715 (780)
++|..... ........+ ...++|+.|.+.+|.++.-.... ..+.|..|.+..++
T Consensus 249 ~dcll~~~---Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 249 GDCLLENE---GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred cccccccc---cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 88754221 111122222 33567788887777644321111 34556666665444
No 156
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.61 E-value=0.0016 Score=77.15 Aligned_cols=165 Identities=18% Similarity=0.159 Sum_probs=86.1
Q ss_pred cccCCchHHHHHHHHHHc------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHH
Q 037947 151 EQFESRMPTFQDIMEALK------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 224 (780)
...+|.++.++.+.+++. ..+.+++.++|++|+|||++|+.+++..... | .-++++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~--~---~~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRK--F---VRFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC--e---EEEeCCCcccHHHHcCC--
Confidence 346788888888888764 2244689999999999999999999987432 3 22233333333322110
Q ss_pred HHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcccc------ccccCCcccc-cccccCC-------CCCcEEE
Q 037947 225 GALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLDL------DAVGIPYKNY-QNEIKDD-------RRRCAML 290 (780)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~------~~l~~~~~~~-~~~l~~~-------~~~s~ii 290 (780)
...... .......+.+... ..++-+++||+++....- ..+...+... ...+.+. ..+..+|
T Consensus 393 ---~~~~~g-~~~g~i~~~l~~~-~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I 467 (775)
T TIGR00763 393 ---RRTYVG-AMPGRIIQGLKKA-KTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFI 467 (775)
T ss_pred ---CCceeC-CCCchHHHHHHHh-CcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEEE
Confidence 000000 0011222233322 234448899998665320 1111111000 0000111 1233445
Q ss_pred EEecchhH-HhhhcCCcceEEcCCCChHHHHHHHHHhh
Q 037947 291 LTSRRKDL-LYNEMNSQKNFLINVLSDQEAVQLFEKMS 327 (780)
Q Consensus 291 vTtr~~~v-~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 327 (780)
.||..... ..........+++.+++.++-.+++.++.
T Consensus 468 ~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 55554332 22233455688999999988888876654
No 157
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.61 E-value=0.00057 Score=81.39 Aligned_cols=157 Identities=14% Similarity=0.198 Sum_probs=89.6
Q ss_pred CccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCC----CCe-EEEEEEccCCCHHHHHHHH
Q 037947 149 GYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKL----FDE-VVMVVVSQKPDYKAIQNEI 223 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~-~~wv~vs~~~~~~~~~~~i 223 (780)
..++++||+.+++++++.|......-+.++|++|+|||++|+.+......... ... ++++..+.- ..
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------~a-- 247 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------VA-- 247 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------hh--
Confidence 34679999999999999998766667789999999999999999988643211 122 223332221 10
Q ss_pred HHHcCCCcCCCCCHHHHHHHHHHHhc--cCcEEEEEeCCCCcccc---------ccccCCcccccccccCCCCCcEEEEE
Q 037947 224 AGALGLFLGEHEDVSERAHLLRQRLK--ASRVLVILDDVWNRLDL---------DAVGIPYKNYQNEIKDDRRRCAMLLT 292 (780)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~---------~~l~~~~~~~~~~l~~~~~~s~iivT 292 (780)
+.... .+.++..+.+.+.+. +++.+|++|++.....- ..+..+. . ....-++|-+
T Consensus 248 ----g~~~~--g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~-------l-~~g~l~~Iga 313 (857)
T PRK10865 248 ----GAKYR--GEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA-------L-ARGELHCVGA 313 (857)
T ss_pred ----ccchh--hhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcch-------h-hcCCCeEEEc
Confidence 00000 112333333333332 47899999998655211 1111111 1 1224456655
Q ss_pred ecchhHH------hhhcCCcceEEcCCCChHHHHHHHHHhh
Q 037947 293 SRRKDLL------YNEMNSQKNFLINVLSDQEAVQLFEKMS 327 (780)
Q Consensus 293 tr~~~v~------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 327 (780)
|...+.. .........+.+...+.++...++....
T Consensus 314 Tt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 314 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 5554421 1112233456666668888888886554
No 158
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.60 E-value=0.00021 Score=75.70 Aligned_cols=132 Identities=20% Similarity=0.322 Sum_probs=84.4
Q ss_pred cCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCcc-CCC-cccccccCCCcEEEeecC-CCCccChhhcCCCCCCEE
Q 037947 555 EGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCV-LGD-VATVGALKKLVILSFRNS-HIEQLPEEIGQLTRLKLL 631 (780)
Q Consensus 555 ~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~-~~~-~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L 631 (780)
..+..++.|++++|.++.+|. + -.+|+.|.+++|. +.. |..+ ..+|++|++++| .+..+|.+ |++|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceE
Confidence 346889999999999999882 2 2469999998865 444 3333 358999999988 78888864 5555
Q ss_pred ecCC--CCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhc-CC-CCCCEEEeeccCCCCCCccccccCcc
Q 037947 632 DLSN--CSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELN-QL-SRLTTLEMHILDAQVMPRELFSVGLE 707 (780)
Q Consensus 632 ~l~~--~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~-~L-~~L~~L~l~~~~~~~~~~~~~~~~L~ 707 (780)
++.. |..+..+|+ +|+.|.+.++... .. ..+. .| ++|+.|++..+....+|..+. .+|+
T Consensus 118 ~L~~n~~~~L~~LPs-------sLk~L~I~~~n~~--~~-------~~lp~~LPsSLk~L~Is~c~~i~LP~~LP-~SLk 180 (426)
T PRK15386 118 EIKGSATDSIKNVPN-------GLTSLSINSYNPE--NQ-------ARIDNLISPSLKTLSLTGCSNIILPEKLP-ESLQ 180 (426)
T ss_pred EeCCCCCcccccCcc-------hHhheeccccccc--cc-------cccccccCCcccEEEecCCCcccCccccc-ccCc
Confidence 5553 233444433 4666766432110 00 0111 12 578999998877666666543 5788
Q ss_pred EEEEEec
Q 037947 708 RYKIFLG 714 (780)
Q Consensus 708 ~L~i~~~ 714 (780)
.|.+..+
T Consensus 181 ~L~ls~n 187 (426)
T PRK15386 181 SITLHIE 187 (426)
T ss_pred EEEeccc
Confidence 8888653
No 159
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.60 E-value=7.2e-05 Score=67.74 Aligned_cols=23 Identities=39% Similarity=0.476 Sum_probs=21.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHh
Q 037947 175 IGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 175 v~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
|.|+|++|+||||+|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 57999999999999999999874
No 160
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.60 E-value=0.00022 Score=65.19 Aligned_cols=91 Identities=24% Similarity=0.145 Sum_probs=53.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccC
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKAS 251 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 251 (780)
...+.|+|++|+||||+|+.++....... ..+++++.+........... ....... ............+.+..+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGK-KASGSGELRLRLALALARKL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhcc-CCCCCHHHHHHHHHHHHHhc
Confidence 35789999999999999999998875442 34566665554332222211 1111111 11111333444555555554
Q ss_pred c-EEEEEeCCCCcccc
Q 037947 252 R-VLVILDDVWNRLDL 266 (780)
Q Consensus 252 r-~LlVlDdv~~~~~~ 266 (780)
+ .+|++|++......
T Consensus 78 ~~~viiiDei~~~~~~ 93 (148)
T smart00382 78 KPDVLILDEITSLLDA 93 (148)
T ss_pred CCCEEEEECCcccCCH
Confidence 4 89999999877543
No 161
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.60 E-value=8e-05 Score=52.35 Aligned_cols=38 Identities=37% Similarity=0.597 Sum_probs=20.0
Q ss_pred CCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCccc
Q 037947 604 KLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSI 642 (780)
Q Consensus 604 ~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~ 642 (780)
+|++|++++|.++.+|..+++|++|+.|++++ +.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~-N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN-NPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS-SCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecC-CCCCCC
Confidence 45555555555555555555566666666555 344444
No 162
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=4.9e-05 Score=87.37 Aligned_cols=130 Identities=23% Similarity=0.288 Sum_probs=91.2
Q ss_pred CCCccEEEeccCcc-ccccCchhhcCCCCccEEEecCCCCC--CCCccccCCCCCCEEEccCccCCCcccccccCCCcEE
Q 037947 532 CPKLKLFFLFSKKL-SLVIPDLFFEGVPSLQVLSLNGFHFP--SLPSTLGCLINLQTLSFECCVLGDVATVGALKKLVIL 608 (780)
Q Consensus 532 ~~~L~~L~l~~~~~-~~~~~~~~~~~l~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L 608 (780)
-.+|+.|+++|... ....|..+...+|.|+.|.+.+-.+. ++-.-..+++||+.||+++++++.+..|++|++|+.|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 35788888887653 33455556667899999999887654 2233445788999999999999989999999999999
Q ss_pred EeecCCCCccC--hhhcCCCCCCEEecCCCCCCcccCc------cccCCCcccceeeccCCC
Q 037947 609 SFRNSHIEQLP--EEIGQLTRLKLLDLSNCSKLKSIRP------NVISNLPRLEELYMGNSF 662 (780)
Q Consensus 609 ~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~~~------~~l~~l~~L~~L~l~~~~ 662 (780)
.+++-.++.-+ ..+..|++|+.||+|.... ...+. +.-..|++|+.|+.+++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~-~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKN-NDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeecccccc-ccchHHHHHHHHhcccCccccEEecCCcc
Confidence 88876666433 3577889999999987322 22110 111237888888887653
No 163
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.55 E-value=0.0012 Score=73.82 Aligned_cols=160 Identities=16% Similarity=0.106 Sum_probs=94.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASR 252 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 252 (780)
..+.|+|..|+|||.|++.+++.......-..++|++. .++..++...+.. .....+.+.+.+ -
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~---------~~~~~f~~~y~~-~ 378 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRD---------GKGDSFRRRYRE-M 378 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHh---------ccHHHHHHHhhc-C
Confidence 45899999999999999999998754311223556543 3344444433321 011223333333 3
Q ss_pred EEEEEeCCCCccc---ccc-ccCCcccccccccCCCCCcEEEEEecchhHH--------hhhcCCcceEEcCCCChHHHH
Q 037947 253 VLVILDDVWNRLD---LDA-VGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL--------YNEMNSQKNFLINVLSDQEAV 320 (780)
Q Consensus 253 ~LlVlDdv~~~~~---~~~-l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~--------~~~~~~~~~~~l~~L~~~~~~ 320 (780)
=+|||||+..... |+. +. .+.+.+. ..+..|||||+...-. ...+...-++.+++.+.+.-.
T Consensus 379 DLLlIDDIq~l~gke~tqeeLF----~l~N~l~--e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~ 452 (617)
T PRK14086 379 DILLVDDIQFLEDKESTQEEFF----HTFNTLH--NANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRI 452 (617)
T ss_pred CEEEEehhccccCCHHHHHHHH----HHHHHHH--hcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHH
Confidence 4788999966522 221 11 1122222 2245688888763211 112344568999999999999
Q ss_pred HHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHH
Q 037947 321 QLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAIT 355 (780)
Q Consensus 321 ~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 355 (780)
+++.+++... ...--+++.+-|++.+.+..-.+.
T Consensus 453 aIL~kka~~r-~l~l~~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 453 AILRKKAVQE-QLNAPPEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHHHHHHhc-CCCCCHHHHHHHHHhccCCHHHHH
Confidence 9999888532 222235778888888776654433
No 164
>PRK10536 hypothetical protein; Provisional
Probab=97.55 E-value=0.00097 Score=66.13 Aligned_cols=58 Identities=21% Similarity=0.266 Sum_probs=43.6
Q ss_pred CCccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEE
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVM 207 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 207 (780)
.+...+.+|......++.++.+. .+|.+.|++|+|||+||..+..+.-..+.|+.++.
T Consensus 52 ~~~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 52 RDTSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred cCCccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 34455678899999999988764 48999999999999999999886432333554433
No 165
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.55 E-value=0.00013 Score=84.81 Aligned_cols=160 Identities=16% Similarity=0.203 Sum_probs=92.4
Q ss_pred ccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccC-C---CCeEEEEEEccCCCHHHHHHHHHH
Q 037947 150 YEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDK-L---FDEVVMVVVSQKPDYKAIQNEIAG 225 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~---F~~~~wv~vs~~~~~~~~~~~i~~ 225 (780)
.++++||+++++++++.|......-+.++|++|+|||++|+.++....... . .++.+|.. +...+ +.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~l----la 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGSL----LA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHHH----hc
Confidence 457899999999999998865555667999999999999999998753322 1 13444421 11111 10
Q ss_pred HcCCCcCCCCCHHHHHHHHHHHhc-cCcEEEEEeCCCCcccc-------ccccCCcccccccccCCCCCcEEEEEecchh
Q 037947 226 ALGLFLGEHEDVSERAHLLRQRLK-ASRVLVILDDVWNRLDL-------DAVGIPYKNYQNEIKDDRRRCAMLLTSRRKD 297 (780)
Q Consensus 226 ~l~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~~~-------~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~ 297 (780)
+..... +.+...+.+.+.++ .++.+|++|++.....- .++...+. .. . ....-+||-+|...+
T Consensus 256 --G~~~~G--e~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLk---p~-L-~~g~i~vIgATt~~E 326 (758)
T PRK11034 256 --GTKYRG--DFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIK---PL-L-SSGKIRVIGSTTYQE 326 (758)
T ss_pred --ccchhh--hHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHH---HH-H-hCCCeEEEecCChHH
Confidence 111111 13344444444443 46789999999644110 00100010 00 1 123345555555443
Q ss_pred HH------hhhcCCcceEEcCCCChHHHHHHHHHhh
Q 037947 298 LL------YNEMNSQKNFLINVLSDQEAVQLFEKMS 327 (780)
Q Consensus 298 v~------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 327 (780)
.. .........+.+++.+.++..+++....
T Consensus 327 ~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 327 FSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 21 1112344679999999999999998654
No 166
>CHL00176 ftsH cell division protein; Validated
Probab=97.53 E-value=0.0023 Score=73.07 Aligned_cols=178 Identities=14% Similarity=0.179 Sum_probs=94.7
Q ss_pred ccccCCchHHHHH---HHHHHccC---------CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHH
Q 037947 150 YEQFESRMPTFQD---IMEALKDD---------NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYK 217 (780)
Q Consensus 150 ~~~~~gr~~~~~~---l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 217 (780)
..++.|.++..++ +++.+... ..+-|.++|++|+|||++|+.++...... |+.++..
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-------~i~is~s---- 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-------FFSISGS---- 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------eeeccHH----
Confidence 4556777655544 44444321 23568999999999999999998865322 2333221
Q ss_pred HHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcccc---------ccccCCccccccccc--CCCCC
Q 037947 218 AIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLDL---------DAVGIPYKNYQNEIK--DDRRR 286 (780)
Q Consensus 218 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~---------~~l~~~~~~~~~~l~--~~~~~ 286 (780)
++.... .+ .........+.......+++|+|||++....- +.....+..++..+. ....+
T Consensus 251 ~f~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 251 EFVEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HHHHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 111110 00 00112222333444568899999999654110 000000000111111 12345
Q ss_pred cEEEEEecchhHHhh-hc---CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCC
Q 037947 287 CAMLLTSRRKDLLYN-EM---NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGG 349 (780)
Q Consensus 287 s~iivTtr~~~v~~~-~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G 349 (780)
..||.||........ .. .-...+.+++.+.++-.++++.++......+ ......+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCC
Confidence 567777766543211 11 1235788888899999999988875422111 2345678888887
No 167
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.51 E-value=1.5e-06 Score=94.66 Aligned_cols=123 Identities=27% Similarity=0.340 Sum_probs=93.6
Q ss_pred CccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCCccccccc-CCCcEEEeec
Q 037947 534 KLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGDVATVGAL-KKLVILSFRN 612 (780)
Q Consensus 534 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l-~~L~~L~l~~ 612 (780)
.|.+.+.+.|.+. ..+..+.-++.|+.|+|+.|++++.- .+..|++|++|||+.|.+..++.++.- .+|+.|+++|
T Consensus 165 ~L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 3444555555543 33334566789999999999998764 788999999999999998885544322 3499999999
Q ss_pred CCCCccChhhcCCCCCCEEecCCCCCCcc---cCccccCCCcccceeeccCCCC
Q 037947 613 SHIEQLPEEIGQLTRLKLLDLSNCSKLKS---IRPNVISNLPRLEELYMGNSFT 663 (780)
Q Consensus 613 ~~l~~lp~~i~~l~~L~~L~l~~~~~l~~---~~~~~l~~l~~L~~L~l~~~~~ 663 (780)
|.+++|- ++.+|.+|++||++. |-+.. +.| ++.|.+|..|++.+|..
T Consensus 242 N~l~tL~-gie~LksL~~LDlsy-Nll~~hseL~p--LwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 242 NALTTLR-GIENLKSLYGLDLSY-NLLSEHSELEP--LWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cHHHhhh-hHHhhhhhhccchhH-hhhhcchhhhH--HHHHHHHHHHhhcCCcc
Confidence 9998884 589999999999998 44433 333 67888999999999854
No 168
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.0034 Score=64.09 Aligned_cols=199 Identities=17% Similarity=0.233 Sum_probs=114.3
Q ss_pred CccccCCchHHHHHHHHHHc----c---------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC
Q 037947 149 GYEQFESRMPTFQDIMEALK----D---------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD 215 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (780)
.+.++-|-++.+++|.+... + +..+=|.++|++|.|||-||+.|+++.... |+.|..+
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvgS-- 219 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVGS-- 219 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEeccH--
Confidence 45667788888998888765 1 356778999999999999999999986543 3333332
Q ss_pred HHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhc-cCcEEEEEeCCCCccc------------cc----cccCCcccccc
Q 037947 216 YKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLK-ASRVLVILDDVWNRLD------------LD----AVGIPYKNYQN 278 (780)
Q Consensus 216 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~~------------~~----~l~~~~~~~~~ 278 (780)
++.+..+ |. -....+.+.+.-+ ..+.+|++|.++.... .+ .+...+..
T Consensus 220 --ElVqKYi---GE-------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDG--- 284 (406)
T COG1222 220 --ELVQKYI---GE-------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDG--- 284 (406)
T ss_pred --HHHHHHh---cc-------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccC---
Confidence 2222221 10 1223334444333 3789999999865411 00 01111111
Q ss_pred cccCCCCCcEEEEEecchhHHhh-hc---CCcceEEcCCCChHHHHHHHHHhhCCCC--CCCChhHHHHHHHHHhCCCh-
Q 037947 279 EIKDDRRRCAMLLTSRRKDLLYN-EM---NSQKNFLINVLSDQEAVQLFEKMSGVFE--GPLDFQNLAIKIARECGGLP- 351 (780)
Q Consensus 279 ~l~~~~~~s~iivTtr~~~v~~~-~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~--~~~~~~~~~~~i~~~c~GlP- 351 (780)
-+.....|||..|...++... .+ .-...++++.-+.+.-.++|.-++..-. ..-++ +.+++.|.|.-
T Consensus 285 --FD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~----e~la~~~~g~sG 358 (406)
T COG1222 285 --FDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDL----ELLARLTEGFSG 358 (406)
T ss_pred --CCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCH----HHHHHhcCCCch
Confidence 133456799999888776411 11 2245677774445555566666665322 22333 45566666654
Q ss_pred ---HHHHHHHHHHh---CC---ChhHHHHHHHHHh
Q 037947 352 ---VAITTVATALR---NK---SLFVWKDALLQLR 377 (780)
Q Consensus 352 ---Lai~~~~~~L~---~~---~~~~w~~~~~~l~ 377 (780)
-||.+=|++++ .+ +.+.+.++.++..
T Consensus 359 AdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~ 393 (406)
T COG1222 359 ADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVV 393 (406)
T ss_pred HHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHH
Confidence 45666677765 22 5556666655543
No 169
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=0.00081 Score=74.56 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=94.4
Q ss_pred ccCCchHHHHHHHHHHc------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHH
Q 037947 152 QFESRMPTFQDIMEALK------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAG 225 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 225 (780)
+-+|-++..++|++.|. .-+.+++.+|||+|+|||+|++.+++....+ | +-++++.-.+..++-..=-.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk--f---vR~sLGGvrDEAEIRGHRRT 398 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK--F---VRISLGGVRDEAEIRGHRRT 398 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC--E---EEEecCccccHHHhcccccc
Confidence 34588999999999986 2345799999999999999999999987554 4 34556665554443221111
Q ss_pred HcCCCcCCCCCHHHHHHHHHHHh---ccCcEEEEEeCCCCccc-c-----ccccCCcccc------cccc--cCCCCCcE
Q 037947 226 ALGLFLGEHEDVSERAHLLRQRL---KASRVLVILDDVWNRLD-L-----DAVGIPYKNY------QNEI--KDDRRRCA 288 (780)
Q Consensus 226 ~l~~~~~~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~-~-----~~l~~~~~~~------~~~l--~~~~~~s~ 288 (780)
-+|. .-.++.+-+ +.+.-+++||.++.... + .++...+.+- ..+| +-.-....
T Consensus 399 YIGa----------mPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~Vm 468 (782)
T COG0466 399 YIGA----------MPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVM 468 (782)
T ss_pred cccc----------CChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheE
Confidence 1111 111233333 34777999999865521 0 0111111000 0011 11111223
Q ss_pred EEEEecchh-HHhhhcCCcceEEcCCCChHHHHHHHHHhh
Q 037947 289 MLLTSRRKD-LLYNEMNSQKNFLINVLSDQEAVQLFEKMS 327 (780)
Q Consensus 289 iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 327 (780)
.|.|..+-+ ++...+....++++.+.+++|-.++-+++.
T Consensus 469 FiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 469 FIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 344444443 444456777899999999999888887765
No 170
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.50 E-value=0.0024 Score=71.90 Aligned_cols=181 Identities=15% Similarity=0.189 Sum_probs=93.6
Q ss_pred CccccCCchHHHHHHHHHH---cc---------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH
Q 037947 149 GYEQFESRMPTFQDIMEAL---KD---------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY 216 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L---~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (780)
...++.|-+..++++.+.+ .. ...+-+.++|++|+|||++|+.+++..... ++.++.
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~---- 121 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISG---- 121 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccH----
Confidence 4556778776655554433 21 223458899999999999999998865322 222221
Q ss_pred HHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcccccc--cc-------CCccccccccc--CCCC
Q 037947 217 KAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLDLDA--VG-------IPYKNYQNEIK--DDRR 285 (780)
Q Consensus 217 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~--l~-------~~~~~~~~~l~--~~~~ 285 (780)
.++.... .+ .........+.......+.+|+|||++....-.. .. ..+..++..+. ....
T Consensus 122 ~~~~~~~---~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 122 SDFVEMF---VG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHHHHHH---hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 1111111 00 0011222223333345778999999965421000 00 00000111111 1223
Q ss_pred CcEEEEEecchhHHhh-hc---CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 286 RCAMLLTSRRKDLLYN-EM---NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 286 ~s~iivTtr~~~v~~~-~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
+..||.||........ .. .-...+.++..+.++-.++|..+.......+. .....+++.+.|.-
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~--~~l~~la~~t~G~s 260 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPD--VDLKAVARRTPGFS 260 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc--hhHHHHHHhCCCCC
Confidence 4556667766542211 11 23457889888888888888887753222211 22457788887743
No 171
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.47 E-value=0.00075 Score=76.44 Aligned_cols=216 Identities=12% Similarity=0.140 Sum_probs=109.6
Q ss_pred CcccccccCCccccCCchHHHHHHHHHHcc-----CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc--
Q 037947 140 EWTETLHLRGYEQFESRMPTFQDIMEALKD-----DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-- 212 (780)
Q Consensus 140 ~~~~~~~~~~~~~~~gr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-- 212 (780)
+|.....|...++++|.++.++++..|+.. ...+++.|+|++|+||||+++.++.... ++..-|++...
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~----~~~~Ew~npv~~~ 148 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG----IQVQEWSNPTLPD 148 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh----hHHHHHhhhhhhc
Confidence 344445556677899999999999998873 2346799999999999999999988653 22223322110
Q ss_pred -CCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHH---H----hccCcEEEEEeCCCCccccccccCCcccccc-cccCC
Q 037947 213 -KPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQ---R----LKASRVLVILDDVWNRLDLDAVGIPYKNYQN-EIKDD 283 (780)
Q Consensus 213 -~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~---~----L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~-~l~~~ 283 (780)
..+...+...+..++................... . ..+++.+|++|++.+...... ..+..++. .....
T Consensus 149 ~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~--~~lq~lLr~~~~e~ 226 (637)
T TIGR00602 149 FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDT--RALHEILRWKYVSI 226 (637)
T ss_pred ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhH--HHHHHHHHHHhhcC
Confidence 0011111122222222111110001111111111 1 134677999999965421110 01111111 00112
Q ss_pred CCCcEEEEEecchh---------HH------hhhc--CCcceEEcCCCChHHHHHHHHHhhCCCC---CCC---ChhHHH
Q 037947 284 RRRCAMLLTSRRKD---------LL------YNEM--NSQKNFLINVLSDQEAVQLFEKMSGVFE---GPL---DFQNLA 340 (780)
Q Consensus 284 ~~~s~iivTtr~~~---------v~------~~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~---~~~---~~~~~~ 340 (780)
+.-.-|+|||-... .. .... .....+...|+...+-.+.+.+.+.... ... .-.+..
T Consensus 227 ~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l 306 (637)
T TIGR00602 227 GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSV 306 (637)
T ss_pred CCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHH
Confidence 22223444552211 00 0111 1334689999999997777776664211 111 123577
Q ss_pred HHHHHHhCCChHHHHHHHHHH
Q 037947 341 IKIARECGGLPVAITTVATAL 361 (780)
Q Consensus 341 ~~i~~~c~GlPLai~~~~~~L 361 (780)
..|+..++|---.+...-.+.
T Consensus 307 ~~I~~~s~GDiRsAIn~LQf~ 327 (637)
T TIGR00602 307 ELLCQGCSGDIRSAINSLQFS 327 (637)
T ss_pred HHHHHhCCChHHHHHHHHHHH
Confidence 788888888776655555554
No 172
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.47 E-value=0.0072 Score=59.78 Aligned_cols=186 Identities=14% Similarity=0.168 Sum_probs=103.1
Q ss_pred CCccccCCchHHHHHHHHHHc-----cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALK-----DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNE 222 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~-----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 222 (780)
....+|+|.++.++.+-=.+. +...--|.++|++|.||||||.-+++...+. + -++-+....-..-+..
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~leK~gDlaa 96 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPALEKPGDLAA 96 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e----EecccccccChhhHHH
Confidence 446789999888887765554 3456679999999999999999999988665 1 1222221111112222
Q ss_pred HHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc-ccc-ccCCcccc-cccccCCCCC-----------cE
Q 037947 223 IAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD-LDA-VGIPYKNY-QNEIKDDRRR-----------CA 288 (780)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-~~~-l~~~~~~~-~~~l~~~~~~-----------s~ 288 (780)
|+..+. ..=++++|.+..... .+. +..++..+ +......+++ +-
T Consensus 97 iLt~Le----------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTL 154 (332)
T COG2255 97 ILTNLE----------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTL 154 (332)
T ss_pred HHhcCC----------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeE
Confidence 332222 122344455433310 000 00000000 0000111122 23
Q ss_pred EEEEecchhHHhhhc-CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHHh
Q 037947 289 MLLTSRRKDLLYNEM-NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATALR 362 (780)
Q Consensus 289 iivTtr~~~v~~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~ 362 (780)
|=.|||.-.+..... .-..+.+++-.+.+|-.++..+.+.. -..+--++.+.+|++...|-|--..-+-+..+
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~-l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVR 228 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI-LGIEIDEEAALEIARRSRGTPRIANRLLRRVR 228 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH-hCCCCChHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 556888765532111 12346889999999999999988852 12222346788999999999975544444433
No 173
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.42 E-value=0.011 Score=61.67 Aligned_cols=189 Identities=14% Similarity=0.147 Sum_probs=102.1
Q ss_pred HHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCc------
Q 037947 159 TFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFL------ 231 (780)
Q Consensus 159 ~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------ 231 (780)
..+.+...+..++. ..+-+.|+.|+||+++|..+....--.+.-+. .++.+.+ -+.+...-..+.
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~----~Cg~C~s----C~~~~~g~HPD~~~i~p~ 82 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSE----ACGFCHS----CELMQSGNHPDLHVIKPE 82 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCC----CCCCCHH----HHHHHcCCCCCEEEEecC
Confidence 34566666665554 57889999999999999999876532211000 0000000 000000000000
Q ss_pred --CCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEecc-hhHHhh
Q 037947 232 --GEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSRR-KDLLYN 301 (780)
Q Consensus 232 --~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~-~~v~~~ 301 (780)
...-..+ .++.+.+.+ .+++-++|+|+++... ..+.+...+ .....++.+|++|.+ ..+...
T Consensus 83 ~~~~~I~vd-qiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtL-------EEPp~~t~fiL~t~~~~~lLpT 154 (319)
T PRK06090 83 KEGKSITVE-QIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTL-------EEPAPNCLFLLVTHNQKRLLPT 154 (319)
T ss_pred cCCCcCCHH-HHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHh-------cCCCCCeEEEEEECChhhChHH
Confidence 0000112 223333333 2345689999987663 233332222 333445666666555 445444
Q ss_pred hcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHHhCCChhHHHHHHHH
Q 037947 302 EMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATALRNKSLFVWKDALLQ 375 (780)
Q Consensus 302 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~~~~~~ 375 (780)
.......+.+.+++.+++.+.+...... .+..+++.++|.|+.+..+ +.....+..+.....
T Consensus 155 I~SRCq~~~~~~~~~~~~~~~L~~~~~~---------~~~~~l~l~~G~p~~A~~~---~~~~~~~~~~~~~~~ 216 (319)
T PRK06090 155 IVSRCQQWVVTPPSTAQAMQWLKGQGIT---------VPAYALKLNMGSPLKTLAM---MKEGGLEKYHKLERQ 216 (319)
T ss_pred HHhcceeEeCCCCCHHHHHHHHHHcCCc---------hHHHHHHHcCCCHHHHHHH---hCCCcHHHHHHHHHH
Confidence 5566778999999999999988654211 2357789999999976544 333344444444443
No 174
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.40 E-value=0.0016 Score=68.32 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=68.7
Q ss_pred HHHHHHHHcc-CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCe-EEEEEEccC-CCHHHHHHHHHHHcCCCcCCCCC
Q 037947 160 FQDIMEALKD-DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDE-VVMVVVSQK-PDYKAIQNEIAGALGLFLGEHED 236 (780)
Q Consensus 160 ~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~ 236 (780)
..++++.+.. .+...+.|+|.+|+|||||++.+++..... +-+. ++|+.+.+. .++.++.+.+...+.....+...
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 3457777662 344567999999999999999999987554 3344 577777765 47889999998877665433331
Q ss_pred HH-----HHHHHHHHHh--ccCcEEEEEeCCCC
Q 037947 237 VS-----ERAHLLRQRL--KASRVLVILDDVWN 262 (780)
Q Consensus 237 ~~-----~~~~~l~~~L--~~kr~LlVlDdv~~ 262 (780)
.. .....+.+++ ++++.+||+|++..
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr 231 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTR 231 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHH
Confidence 11 1122233333 46999999999843
No 175
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.38 E-value=0.0034 Score=66.38 Aligned_cols=145 Identities=10% Similarity=0.130 Sum_probs=85.6
Q ss_pred cCC-chHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccC--------------------CCCeEEEEEE
Q 037947 153 FES-RMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDK--------------------LFDEVVMVVV 210 (780)
Q Consensus 153 ~~g-r~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~v 210 (780)
++| -+..++.+...+..++. ....++|+.|+||||+|..+.+..--.. |.|.......
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 445 56677777777776665 4669999999999999999988753221 2222111111
Q ss_pred ccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCccc--cccccCCcccccccccCC
Q 037947 211 SQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDD 283 (780)
Q Consensus 211 s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~ 283 (780)
+.... . +.++.+.+.+ .+.+-++|+|++..... .+.+...+ ...
T Consensus 87 ~~~i~---------------------i-d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~L-------EEP 137 (329)
T PRK08058 87 GQSIK---------------------K-DQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFL-------EEP 137 (329)
T ss_pred cccCC---------------------H-HHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHh-------cCC
Confidence 11111 1 1222222322 24556899999865532 22222222 444
Q ss_pred CCCcEEEEEecchh-HHhhhcCCcceEEcCCCChHHHHHHHHHh
Q 037947 284 RRRCAMLLTSRRKD-LLYNEMNSQKNFLINVLSDQEAVQLFEKM 326 (780)
Q Consensus 284 ~~~s~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 326 (780)
..++.+|++|.+.. +..........+++.+++.++..+.+...
T Consensus 138 p~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 138 SGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 45667777766543 33334456678999999999998888653
No 176
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.37 E-value=0.0011 Score=70.27 Aligned_cols=139 Identities=18% Similarity=0.235 Sum_probs=82.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA 250 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 250 (780)
....+.|+|..|.|||-|++.+.+..... ......++++ .++.....+..+. +.....+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~--~~~a~v~y~~----se~f~~~~v~a~~---------~~~~~~Fk~~y-- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALAN--GPNARVVYLT----SEDFTNDFVKALR---------DNEMEKFKEKY-- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhh--CCCceEEecc----HHHHHHHHHHHHH---------hhhHHHHHHhh--
Confidence 36789999999999999999999988665 3322223322 2233333333321 12233455554
Q ss_pred CcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhHH--------hhhcCCcceEEcCCCChHHHHHH
Q 037947 251 SRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL--------YNEMNSQKNFLINVLSDQEAVQL 322 (780)
Q Consensus 251 kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~--------~~~~~~~~~~~l~~L~~~~~~~L 322 (780)
.-=++++||++.....+.....+=...+.+... |-.||+|++...-. ......+-++.+.|.+.+....+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN--GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc--CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 334889999966533211111111112222333 33899998765432 11234456899999999999999
Q ss_pred HHHhhC
Q 037947 323 FEKMSG 328 (780)
Q Consensus 323 f~~~~~ 328 (780)
+.+.+.
T Consensus 253 L~kka~ 258 (408)
T COG0593 253 LRKKAE 258 (408)
T ss_pred HHHHHH
Confidence 999775
No 177
>PRK08118 topology modulation protein; Reviewed
Probab=97.37 E-value=0.00011 Score=69.36 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=28.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhcc-CCCCeEEE
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMED-KLFDEVVM 207 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 207 (780)
+.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999987554 45677775
No 178
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=6.7e-06 Score=80.66 Aligned_cols=172 Identities=17% Similarity=0.266 Sum_probs=107.2
Q ss_pred CccEEEeccCccccccCchhhcCCCCccEEEecCCCCCC-CCccccCCCCCCEEEccCcc-CCC--c-ccccccCCCcEE
Q 037947 534 KLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPS-LPSTLGCLINLQTLSFECCV-LGD--V-ATVGALKKLVIL 608 (780)
Q Consensus 534 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~l~~L~~L~L~~~~-~~~--~-~~i~~l~~L~~L 608 (780)
.|+.|+++...++......++..+..|+-|.|.|+.+.+ +-..|.+-.+|+.|+|+.|. ++. . --+.++..|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 477788888777665555667788888889998888763 33456667788889988875 433 1 235678888888
Q ss_pred EeecCCCCc--cChhhcC-CCCCCEEecCCCCCC---cccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCC
Q 037947 609 SFRNSHIEQ--LPEEIGQ-LTRLKLLDLSNCSKL---KSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLS 682 (780)
Q Consensus 609 ~l~~~~l~~--lp~~i~~-l~~L~~L~l~~~~~l---~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~ 682 (780)
+++.|.+.. ....+.. -.+|..|++++|.+- +.+ .....++++|-+|++++|... .+..+.++-+++
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~-~tL~~rcp~l~~LDLSD~v~l------~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHL-STLVRRCPNLVHLDLSDSVML------KNDCFQEFFKFN 338 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHH-HHHHHhCCceeeecccccccc------CchHHHHHHhcc
Confidence 888885431 1111111 246777888875321 111 112356778888888877421 224556777788
Q ss_pred CCCEEEeeccCCCCCCccc----cccCccEEEEEe
Q 037947 683 RLTTLEMHILDAQVMPREL----FSVGLERYKIFL 713 (780)
Q Consensus 683 ~L~~L~l~~~~~~~~~~~~----~~~~L~~L~i~~ 713 (780)
.|++|+++.+-. -+|..+ ..+.|.+|++.+
T Consensus 339 ~L~~lSlsRCY~-i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 339 YLQHLSLSRCYD-IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hheeeehhhhcC-CChHHeeeeccCcceEEEEecc
Confidence 888887764421 122222 456666666654
No 179
>PHA00729 NTP-binding motif containing protein
Probab=97.36 E-value=0.0021 Score=62.77 Aligned_cols=35 Identities=37% Similarity=0.516 Sum_probs=28.5
Q ss_pred HHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 162 DIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 162 ~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.+++.+...+...|.|.|.+|+||||||..+.+..
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l 41 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDV 41 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45555555566679999999999999999999875
No 180
>PRK08116 hypothetical protein; Validated
Probab=97.36 E-value=0.00061 Score=69.59 Aligned_cols=103 Identities=21% Similarity=0.221 Sum_probs=60.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASR 252 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 252 (780)
..+.++|..|+|||.||..+++....+ -..+++++ ..+++..+........ . .....+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~------~~~ll~~i~~~~~~~~--~----~~~~~~~~~l~~~d 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVN------FPQLLNRIKSTYKSSG--K----EDENEIIRSLVNAD 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE------HHHHHHHHHHHHhccc--c----ccHHHHHHHhcCCC
Confidence 458899999999999999999998655 33456665 3445555554443211 1 11223444455444
Q ss_pred EEEEEeCCCC--cccccc--ccCCcccccccccCCCCCcEEEEEecch
Q 037947 253 VLVILDDVWN--RLDLDA--VGIPYKNYQNEIKDDRRRCAMLLTSRRK 296 (780)
Q Consensus 253 ~LlVlDdv~~--~~~~~~--l~~~~~~~~~~l~~~~~~s~iivTtr~~ 296 (780)
||||||+.. ..+|.. +...+ +.. -..+..+|+||...
T Consensus 181 -lLviDDlg~e~~t~~~~~~l~~ii----n~r--~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 -LLILDDLGAERDTEWAREKVYNII----DSR--YRKGLPTIVTTNLS 221 (268)
T ss_pred -EEEEecccCCCCCHHHHHHHHHHH----HHH--HHCCCCEEEECCCC
Confidence 899999943 344432 11111 000 12455688888754
No 181
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0027 Score=67.66 Aligned_cols=168 Identities=16% Similarity=0.259 Sum_probs=97.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA 250 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 250 (780)
+...+.+.|++|+|||+||..++... .|+.+--++...-....+-.+ .....+...+.-+.
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSpe~miG~sEsaK---------------c~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISPEDMIGLSESAK---------------CAHIKKIFEDAYKS 597 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeChHHccCccHHHH---------------HHHHHHHHHHhhcC
Confidence 34567789999999999999998754 376654443322211111000 11112223333344
Q ss_pred CcEEEEEeCCCCccccccccCCccccc--------ccccCCCCCcEEEEEecchhHHhhhcC----CcceEEcCCCCh-H
Q 037947 251 SRVLVILDDVWNRLDLDAVGIPYKNYQ--------NEIKDDRRRCAMLLTSRRKDLLYNEMN----SQKNFLINVLSD-Q 317 (780)
Q Consensus 251 kr~LlVlDdv~~~~~~~~l~~~~~~~~--------~~l~~~~~~s~iivTtr~~~v~~~~~~----~~~~~~l~~L~~-~ 317 (780)
.--.||+||+...-+|-.++..|+... ...++.++.--|+-||....|.. .|+ -...|.++.++. +
T Consensus 598 ~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~-~m~i~~~F~~~i~Vpnl~~~~ 676 (744)
T KOG0741|consen 598 PLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ-EMGILDCFSSTIHVPNLTTGE 676 (744)
T ss_pred cceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH-HcCHHHhhhheeecCccCchH
Confidence 567999999999999999888765532 22233333444555776666652 222 235788988887 7
Q ss_pred HHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHHh
Q 037947 318 EAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATALR 362 (780)
Q Consensus 318 ~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~ 362 (780)
+..+.++..- ...+.+.+.++++...+| +-..|+.+-.++.
T Consensus 677 ~~~~vl~~~n--~fsd~~~~~~~~~~~~~~--~~vgIKklL~lie 717 (744)
T KOG0741|consen 677 QLLEVLEELN--IFSDDEVRAIAEQLLSKK--VNVGIKKLLMLIE 717 (744)
T ss_pred HHHHHHHHcc--CCCcchhHHHHHHHhccc--cchhHHHHHHHHH
Confidence 7777776532 223445556677777766 3334455444443
No 182
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.35 E-value=0.0092 Score=63.26 Aligned_cols=212 Identities=14% Similarity=0.160 Sum_probs=126.3
Q ss_pred chHHHHHHHHHHccCCccEEEEEcCCCChHHHHH-HHHHHHHhccCCCCeEEEEEEccC---CCHHHHHHHHHHHcCCCc
Q 037947 156 RMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLV-KQVARRVMEDKLFDEVVMVVVSQK---PDYKAIQNEIAGALGLFL 231 (780)
Q Consensus 156 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~~~l~~~~ 231 (780)
|.+..++|-.||.+..-..|.|.||-|.||+.|+ .++.++.+ .++.+.+.+- .+-..++..++.++|.-+
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5678899999999888889999999999999999 77766532 2566665432 334455555555554321
Q ss_pred ------------------------CCCCCHHHHHHHHHHH---------------------------hc---cCcEEEEE
Q 037947 232 ------------------------GEHEDVSERAHLLRQR---------------------------LK---ASRVLVIL 257 (780)
Q Consensus 232 ------------------------~~~~~~~~~~~~l~~~---------------------------L~---~kr~LlVl 257 (780)
+-.++.+...+.+.+. |+ .++-+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 1112222222221111 11 13679999
Q ss_pred eCCCCcccccc-ccCCcccccccccCCCCCcEEEEEecchhHH---hhhc--CCcceEEcCCCChHHHHHHHHHhhCCCC
Q 037947 258 DDVWNRLDLDA-VGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL---YNEM--NSQKNFLINVLSDQEAVQLFEKMSGVFE 331 (780)
Q Consensus 258 Ddv~~~~~~~~-l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~---~~~~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 331 (780)
|+.-....-.. +...+..|-..|.. .+=.+||++|-+.... ...+ .....+.|...+.+.|.++...+.....
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~~ 233 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVLSQLDEDT 233 (431)
T ss_pred cchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHHHHhcccc
Confidence 99844421111 11111111111122 2345788888775543 2223 3446788999999999999999886331
Q ss_pred CC-------------------CChhHHHHHHHHHhCCChHHHHHHHHHHhC-CCh-hHHHHHHH
Q 037947 332 GP-------------------LDFQNLAIKIARECGGLPVAITTVATALRN-KSL-FVWKDALL 374 (780)
Q Consensus 332 ~~-------------------~~~~~~~~~i~~~c~GlPLai~~~~~~L~~-~~~-~~w~~~~~ 374 (780)
.. .....-....+...||=-.-+..+++.++. .++ +..+.+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 234 EDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred cccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 10 123344567788899999999999999984 343 33444444
No 183
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.0076 Score=62.82 Aligned_cols=180 Identities=16% Similarity=0.136 Sum_probs=98.0
Q ss_pred HHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhccCCCCe-----EEEEEEccCCCHHHHHHHHHHHcCCCc
Q 037947 158 PTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVMEDKLFDE-----VVMVVVSQKPDYKAIQNEIAGALGLFL 231 (780)
Q Consensus 158 ~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-----~~wv~vs~~~~~~~~~~~i~~~l~~~~ 231 (780)
...+.+...+..+++. .+.++|+.|+||+++|..+++..--+....+ +-|+..+..+|+.-+. .....
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~------~~p~~ 84 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVS------FIPNR 84 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEe------cCCCc
Confidence 3456667777666654 6889999999999999999887643211110 0000000000000000 00000
Q ss_pred CC----CCCHHHHHHHHHHHhc-----cCcEEEEEeCCCCccc--cccccCCcccccccccCCCCCcEEEEEecch-hHH
Q 037947 232 GE----HEDVSERAHLLRQRLK-----ASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRRRCAMLLTSRRK-DLL 299 (780)
Q Consensus 232 ~~----~~~~~~~~~~l~~~L~-----~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~-~v~ 299 (780)
.. ..-..+.++.+.+.+. +++-++|+|+++.... -+.+...+ .....++.+|++|.+. .+.
T Consensus 85 ~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtL-------EEPp~~~~fiL~~~~~~~lL 157 (319)
T PRK08769 85 TGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTL-------EEPSPGRYLWLISAQPARLP 157 (319)
T ss_pred ccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHh-------hCCCCCCeEEEEECChhhCc
Confidence 00 0001223334444432 4566999999876632 12222122 3334566677766654 343
Q ss_pred hhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHH
Q 037947 300 YNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTV 357 (780)
Q Consensus 300 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 357 (780)
.........+.+.+++.+++.+.+.... .+ ...+..++..++|.|+.+..+
T Consensus 158 pTIrSRCq~i~~~~~~~~~~~~~L~~~~----~~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 158 ATIRSRCQRLEFKLPPAHEALAWLLAQG----VS---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred hHHHhhheEeeCCCcCHHHHHHHHHHcC----CC---hHHHHHHHHHcCCCHHHHHHH
Confidence 4444556789999999999998887531 11 233667899999999866443
No 184
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.32 E-value=0.017 Score=56.45 Aligned_cols=184 Identities=19% Similarity=0.213 Sum_probs=107.6
Q ss_pred cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEc-cCCCHHHHHHHHHHHcCCCcCCCC--CHHHHHHHHH
Q 037947 169 DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVS-QKPDYKAIQNEIAGALGLFLGEHE--DVSERAHLLR 245 (780)
Q Consensus 169 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~~~~i~~~l~~~~~~~~--~~~~~~~~l~ 245 (780)
.++.+++.|+|.-|.|||++.+......... .++-|.+. +..+...+...|+..+..+....- ..+...+.+.
T Consensus 48 ~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d----~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~ 123 (269)
T COG3267 48 ADGQGILAVTGEVGSGKTVLRRALLASLNED----QVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELA 123 (269)
T ss_pred hcCCceEEEEecCCCchhHHHHHHHHhcCCC----ceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 5667799999999999999999554443322 12224444 456778888888888876322211 1223334444
Q ss_pred HHhc-cCc-EEEEEeCCCCc--cccccccCCcccccccccCCCCCcEEEEEecchh-------HHhhhcCCcce-EEcCC
Q 037947 246 QRLK-ASR-VLVILDDVWNR--LDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKD-------LLYNEMNSQKN-FLINV 313 (780)
Q Consensus 246 ~~L~-~kr-~LlVlDdv~~~--~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~-------v~~~~~~~~~~-~~l~~ 313 (780)
...+ ++| ..++.||.... +..+.++-.. +.-.+....-+|+..-..+- +.......... |++.|
T Consensus 124 al~~~g~r~v~l~vdEah~L~~~~le~Lrll~----nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P 199 (269)
T COG3267 124 ALVKKGKRPVVLMVDEAHDLNDSALEALRLLT----NLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPP 199 (269)
T ss_pred HHHHhCCCCeEEeehhHhhhChhHHHHHHHHH----hhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCC
Confidence 4443 466 89999998555 2222221110 00011111123443322211 10111122334 99999
Q ss_pred CChHHHHHHHHHhhCCCCCCCC--hhHHHHHHHHHhCCChHHHHHHHHH
Q 037947 314 LSDQEAVQLFEKMSGVFEGPLD--FQNLAIKIARECGGLPVAITTVATA 360 (780)
Q Consensus 314 L~~~~~~~Lf~~~~~~~~~~~~--~~~~~~~i~~~c~GlPLai~~~~~~ 360 (780)
++.++...++..+......++. ..+....|.....|.|.+|..++..
T Consensus 200 ~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 200 LTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred cChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 9999999999888874433332 3467788999999999999877643
No 185
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.26 E-value=0.0013 Score=69.87 Aligned_cols=70 Identities=16% Similarity=0.186 Sum_probs=47.7
Q ss_pred CceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCC-CCCCCCccccCCCCCCEEEccC
Q 037947 512 DPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGF-HFPSLPSTLGCLINLQTLSFEC 590 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~~~~lp~~i~~l~~L~~L~L~~ 590 (780)
..++|.+++|.+..+|. -.++|++|.+.++.....+|..+ .+.|+.|++++| .+..+|.+ |+.|++.+
T Consensus 53 ~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L~~ 121 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSLEIKG 121 (426)
T ss_pred CCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccccccc------cceEEeCC
Confidence 36788888888888873 23368899988766555566543 257888899888 56677754 55555655
Q ss_pred cc
Q 037947 591 CV 592 (780)
Q Consensus 591 ~~ 592 (780)
+.
T Consensus 122 n~ 123 (426)
T PRK15386 122 SA 123 (426)
T ss_pred CC
Confidence 44
No 186
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.00027 Score=69.64 Aligned_cols=83 Identities=22% Similarity=0.180 Sum_probs=41.4
Q ss_pred CCCCccEEEeccCcccc-ccCchhhcCCCCccEEEecCCCCCCCCccc-cCCCCCCEEEccCccCCC---cccccccCCC
Q 037947 531 ECPKLKLFFLFSKKLSL-VIPDLFFEGVPSLQVLSLNGFHFPSLPSTL-GCLINLQTLSFECCVLGD---VATVGALKKL 605 (780)
Q Consensus 531 ~~~~L~~L~l~~~~~~~-~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i-~~l~~L~~L~L~~~~~~~---~~~i~~l~~L 605 (780)
.+..++.+++.+|.++. .--..++.+++.|++|+|+.|.+...-.+. -.+.+|+.|-|.++.+.. -+....++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 45556666666665542 111233456666666666666554221111 234566666666655432 2334455555
Q ss_pred cEEEeecC
Q 037947 606 VILSFRNS 613 (780)
Q Consensus 606 ~~L~l~~~ 613 (780)
+.|.++.|
T Consensus 149 telHmS~N 156 (418)
T KOG2982|consen 149 TELHMSDN 156 (418)
T ss_pred hhhhhccc
Confidence 55555444
No 187
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.26 E-value=0.0006 Score=67.26 Aligned_cols=37 Identities=30% Similarity=0.471 Sum_probs=29.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ 212 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 212 (780)
.++|+|..|+||||++..+......+ |.++++++-..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~--f~~I~l~t~~~ 51 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHK--FDHIFLITPEY 51 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhccc--CCEEEEEecCC
Confidence 57899999999999999999876554 88777775533
No 188
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.0053 Score=67.99 Aligned_cols=98 Identities=23% Similarity=0.285 Sum_probs=67.4
Q ss_pred cccCCchHHHHHHHHHHc------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHH
Q 037947 151 EQFESRMPTFQDIMEALK------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 224 (780)
++-+|.++.+++|++++. +-+.+++..+|++|+|||++|+.++.....+ | +-++++.-.++.++-..=-
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk--F---fRfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK--F---FRFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc--e---EEEeccccccHHhhcccce
Confidence 445688999999999986 3456899999999999999999999987554 3 3457777766665432211
Q ss_pred HHcCCCcCCCCCHHHHHHHHHHHhcc---CcEEEEEeCCCCc
Q 037947 225 GALGLFLGEHEDVSERAHLLRQRLKA---SRVLVILDDVWNR 263 (780)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~~l~~~L~~---kr~LlVlDdv~~~ 263 (780)
..+| ..-.++.+.|+. .+-|+.||.|+..
T Consensus 486 TYVG----------AMPGkiIq~LK~v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 486 TYVG----------AMPGKIIQCLKKVKTENPLILIDEVDKL 517 (906)
T ss_pred eeec----------cCChHHHHHHHhhCCCCceEEeehhhhh
Confidence 1111 111245555544 6679999998654
No 189
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.24 E-value=0.012 Score=61.37 Aligned_cols=176 Identities=14% Similarity=0.150 Sum_probs=96.6
Q ss_pred HHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCc------
Q 037947 159 TFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFL------ 231 (780)
Q Consensus 159 ~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~------ 231 (780)
..+.+...+..++. ..+.+.|+.|+||+++|..++...--....... .++.+.+ -+.+...-..+.
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~---~Cg~C~s----C~~~~~g~HPD~~~i~p~ 82 (325)
T PRK06871 10 TYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ---PCGQCHS----CHLFQAGNHPDFHILEPI 82 (325)
T ss_pred HHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC---CCCCCHH----HHHHhcCCCCCEEEEccc
Confidence 34556666666554 577799999999999999998876332111000 0000000 000100000000
Q ss_pred CCCCCHHHHHHHHHHHhc-----cCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEecch-hHHhhhc
Q 037947 232 GEHEDVSERAHLLRQRLK-----ASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRK-DLLYNEM 303 (780)
Q Consensus 232 ~~~~~~~~~~~~l~~~L~-----~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~-~v~~~~~ 303 (780)
....-..+.++.+.+.+. +++-++|+|+++... ..+.+...+ .....++.+|++|.+. .+.....
T Consensus 83 ~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtL-------EEPp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 83 DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTL-------EEPRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHh-------cCCCCCeEEEEEECChHhCchHHH
Confidence 000001222334444442 466688999997763 222332222 3344566767666654 4433344
Q ss_pred CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHH
Q 037947 304 NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAI 354 (780)
Q Consensus 304 ~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 354 (780)
.....+.+.+++.++..+.+...... . ...+...++.++|.|+.+
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~~---~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSSA---E---ISEILTALRINYGRPLLA 200 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhcc---C---hHHHHHHHHHcCCCHHHH
Confidence 55678999999999999888876421 1 123556788899999643
No 190
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.23 E-value=0.0023 Score=60.07 Aligned_cols=137 Identities=16% Similarity=0.182 Sum_probs=74.3
Q ss_pred CchHHHHHHHHHHccCCcc-EEEEEcCCCChHHHHHHHHHHHHhccCCC------------------CeEEEEEEccC--
Q 037947 155 SRMPTFQDIMEALKDDNIN-VIGIYGIGGVGKTTLVKQVARRVMEDKLF------------------DEVVMVVVSQK-- 213 (780)
Q Consensus 155 gr~~~~~~l~~~L~~~~~~-vv~I~G~gGiGKTtLa~~v~~~~~~~~~F------------------~~~~wv~vs~~-- 213 (780)
|-++..+.|.+.+..++.+ .+.++|+.|+||+++|..+++..--.... .-..|+.-...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 4456677777777766654 68999999999999999998876332221 12233322221
Q ss_pred -CCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCc--cccccccCCcccccccccCCCCCcEEE
Q 037947 214 -PDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNR--LDLDAVGIPYKNYQNEIKDDRRRCAML 290 (780)
Q Consensus 214 -~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~l~~~~~~s~ii 290 (780)
..++++. ++...+..... .+++=++|+||++.. +....+...+ .....++.+|
T Consensus 81 ~i~i~~ir-~i~~~~~~~~~----------------~~~~KviiI~~ad~l~~~a~NaLLK~L-------Eepp~~~~fi 136 (162)
T PF13177_consen 81 SIKIDQIR-EIIEFLSLSPS----------------EGKYKVIIIDEADKLTEEAQNALLKTL-------EEPPENTYFI 136 (162)
T ss_dssp SBSHHHHH-HHHHHCTSS-T----------------TSSSEEEEEETGGGS-HHHHHHHHHHH-------HSTTTTEEEE
T ss_pred hhhHHHHH-HHHHHHHHHHh----------------cCCceEEEeehHhhhhHHHHHHHHHHh-------cCCCCCEEEE
Confidence 2222222 33332221111 235669999999776 3333433332 4455678888
Q ss_pred EEecchh-HHhhhcCCcceEEcCCCC
Q 037947 291 LTSRRKD-LLYNEMNSQKNFLINVLS 315 (780)
Q Consensus 291 vTtr~~~-v~~~~~~~~~~~~l~~L~ 315 (780)
++|.+.. +..........+++.+++
T Consensus 137 L~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 137 LITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEECChHHChHHHHhhceEEecCCCC
Confidence 8887765 334444556677777764
No 191
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.22 E-value=2.4e-05 Score=68.04 Aligned_cols=105 Identities=16% Similarity=0.239 Sum_probs=64.5
Q ss_pred EEccCCCCccCCCc----cCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCc
Q 037947 516 ISLPCRDIQELPER----LECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECC 591 (780)
Q Consensus 516 l~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 591 (780)
+.+++|.+-+++.. ....+|...++++|.+. ..|+.+-.+++.+..|++++|.++++|..+..++.|+.|+++.|
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC
Confidence 44444544444322 13445556666666654 45665555666777777777777777777777777777777776
Q ss_pred cCCC-cccccccCCCcEEEeecCCCCccChh
Q 037947 592 VLGD-VATVGALKKLVILSFRNSHIEQLPEE 621 (780)
Q Consensus 592 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~ 621 (780)
.+.. |.-|..|.+|-+|+..+|.+.++|-.
T Consensus 111 ~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 111 PLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred ccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 6655 55555566666666666666666654
No 192
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.22 E-value=0.00052 Score=64.14 Aligned_cols=97 Identities=22% Similarity=0.269 Sum_probs=47.9
Q ss_pred EEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCC--ccccCCCCCCEEEccCcc
Q 037947 515 AISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP--STLGCLINLQTLSFECCV 592 (780)
Q Consensus 515 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp--~~i~~l~~L~~L~L~~~~ 592 (780)
.+.+.+|++..++.+..+++|.+|.+..|.++ .+.+.+...+++|.+|.|.+|++..+. .-+..++.|++|.+-+|.
T Consensus 46 ~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 46 AIDLTDNDLRKLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred eecccccchhhcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 34555555555555555556666666665554 233333334455555666555554331 123344555555555554
Q ss_pred CCC-----cccccccCCCcEEEeec
Q 037947 593 LGD-----VATVGALKKLVILSFRN 612 (780)
Q Consensus 593 ~~~-----~~~i~~l~~L~~L~l~~ 612 (780)
++. .--++++++|++||.++
T Consensus 125 v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 125 VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred hhcccCceeEEEEecCcceEeehhh
Confidence 433 22345555555555543
No 193
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.22 E-value=0.00049 Score=64.26 Aligned_cols=105 Identities=21% Similarity=0.322 Sum_probs=58.7
Q ss_pred CCCEEEccCccCCCcccccccCCCcEEEeecCCCCccChhhcCC-CCCCEEecCCCCCCcccC-ccccCCCcccceeecc
Q 037947 582 NLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQLPEEIGQL-TRLKLLDLSNCSKLKSIR-PNVISNLPRLEELYMG 659 (780)
Q Consensus 582 ~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l-~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~ 659 (780)
+.-.++|++|.+.....+..+..|.+|.+.+|.|+.+...++.+ ++|..|.+.+ +++..+. -..+..+++|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeec
Confidence 44555666666666666666666777777777777665555543 5577777766 3433321 0114566777777766
Q ss_pred CCCCccccccCCccchhhhcCCCCCCEEEeec
Q 037947 660 NSFTHWEIEGQNNASLAELNQLSRLTTLEMHI 691 (780)
Q Consensus 660 ~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~ 691 (780)
+|.... ...--..-+.++++|+.||...
T Consensus 122 ~Npv~~----k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEH----KKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhc----ccCceeEEEEecCcceEeehhh
Confidence 664311 1111112345667777777654
No 194
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.21 E-value=0.0031 Score=69.73 Aligned_cols=181 Identities=12% Similarity=0.086 Sum_probs=89.9
Q ss_pred ccccCCchHHHHHHHHHHc----------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHH
Q 037947 150 YEQFESRMPTFQDIMEALK----------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAI 219 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~----------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 219 (780)
..++.|.+..++.+.+... -...+-|.++|++|+|||.+|+.+++..... | +-++.+. +
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~--~---~~l~~~~------l 295 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP--L---LRLDVGK------L 295 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC--E---EEEEhHH------h
Confidence 3456676655554443211 1234678999999999999999999876432 1 2222221 1
Q ss_pred HHHHHHHcCCCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCccc----ccc---ccCCcccccccccCCCCCcEEEE
Q 037947 220 QNEIAGALGLFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNRLD----LDA---VGIPYKNYQNEIKDDRRRCAMLL 291 (780)
Q Consensus 220 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~----~~~---l~~~~~~~~~~l~~~~~~s~iiv 291 (780)
.. ..... .+...+.+.+.. ...+++|++|+++.... ... ....+..++..+.....+.-||.
T Consensus 296 ~~--------~~vGe--se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIa 365 (489)
T CHL00195 296 FG--------GIVGE--SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVA 365 (489)
T ss_pred cc--------cccCh--HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEE
Confidence 11 00011 112222222222 24789999999965411 000 00000011111122233444666
Q ss_pred EecchhHHhhhc----CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 292 TSRRKDLLYNEM----NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 292 Ttr~~~v~~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
||.+.......+ .-...+.++.-+.++-.++|..+.........-......+++.+.|.-
T Consensus 366 TTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 366 TANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred ecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 776654321111 224567888888899999998877532211100112345666666644
No 195
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.20 E-value=0.0023 Score=75.11 Aligned_cols=165 Identities=14% Similarity=0.144 Sum_probs=92.1
Q ss_pred cccCCchHHHHHHHHHHc------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHH
Q 037947 151 EQFESRMPTFQDIMEALK------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 224 (780)
.+.+|.++.+++|+++|. .....++.++|++|+||||+|+.++...... | +-++.+...+..++...-.
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~---~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--Y---VRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E---EEEEcCCCCCHHHhccchh
Confidence 446799999999998886 2345789999999999999999999865322 2 2234444444333322111
Q ss_pred HHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcccc------ccccCCcccc------cccc--cCCCCCcEEE
Q 037947 225 GALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLDL------DAVGIPYKNY------QNEI--KDDRRRCAML 290 (780)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~------~~l~~~~~~~------~~~l--~~~~~~s~ii 290 (780)
...+.. .....+.+.. .....-+++||.++....- ..+...+..- ..++ +..-.+.-+|
T Consensus 397 ~~~g~~------~G~~~~~l~~-~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 397 TYIGSM------PGKLIQKMAK-VGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred ccCCCC------CcHHHHHHHh-cCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 111110 1122222222 1224457899998655321 1111111000 0000 1112344556
Q ss_pred EEecchhHHhhhcCCcceEEcCCCChHHHHHHHHHhh
Q 037947 291 LTSRRKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMS 327 (780)
Q Consensus 291 vTtr~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 327 (780)
.|+....+..........+++.+++.++-.++..++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 6666655444445666789999999999888877765
No 196
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=7.7e-05 Score=73.39 Aligned_cols=63 Identities=10% Similarity=-0.021 Sum_probs=35.1
Q ss_pred cccCccEEEEEecCccc-----ccccccccceeEeecCCCccc-hhHHHHHhcccceeecccccccccc
Q 037947 702 FSVGLERYKIFLGDVWS-----WTGKYETSRTLKLKLDNPMYL-EHGIKMLLRRTEDLHLDKLNGFQNV 764 (780)
Q Consensus 702 ~~~~L~~L~i~~~~~~~-----~~~~~~~l~~l~L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~ 764 (780)
.++|+.++-+..|+.-. -...++.+..|.|.-+....+ ...-...||.|..|.+.+.|-.+.+
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 46777777776654321 134455556666644322222 1222334788998988887655444
No 197
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.16 E-value=0.0013 Score=63.38 Aligned_cols=53 Identities=21% Similarity=0.340 Sum_probs=38.2
Q ss_pred CchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Q 037947 155 SRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVV 209 (780)
Q Consensus 155 gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 209 (780)
.+..+....++.|. ...+|.+.|++|.|||.||....-+.-..+.|+.++++.
T Consensus 4 p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 4 PKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp --SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 45566667777776 457899999999999999999998776667888888774
No 198
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.16 E-value=0.051 Score=57.71 Aligned_cols=158 Identities=18% Similarity=0.220 Sum_probs=85.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc--
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA-- 250 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~-- 250 (780)
|=..++||+|.|||+++.++++... |+.. =+..+...+-. .|+..|-.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydIy-dLeLt~v~~n~-------------------------dLr~LL~~t~ 285 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDIY-DLELTEVKLDS-------------------------DLRHLLLATP 285 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----CceE-EeeeccccCcH-------------------------HHHHHHHhCC
Confidence 4567999999999999999998763 3321 11222111111 13333322
Q ss_pred CcEEEEEeCCCCcccccc--------cc-----CCcccccc---cccCCCCCcEE-EEEecchhHHh-hhcC---CcceE
Q 037947 251 SRVLVILDDVWNRLDLDA--------VG-----IPYKNYQN---EIKDDRRRCAM-LLTSRRKDLLY-NEMN---SQKNF 309 (780)
Q Consensus 251 kr~LlVlDdv~~~~~~~~--------l~-----~~~~~~~~---~l~~~~~~s~i-ivTtr~~~v~~-~~~~---~~~~~ 309 (780)
.+-+||+.|++...+... .. ..+.++++ .++....+-|| |.||...+-.. ..+. -+-.+
T Consensus 286 ~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI 365 (457)
T KOG0743|consen 286 NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHI 365 (457)
T ss_pred CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEE
Confidence 456777888755422110 00 11222322 23333334454 55777765431 1121 23467
Q ss_pred EcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHH-HhCC
Q 037947 310 LINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATA-LRNK 364 (780)
Q Consensus 310 ~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~-L~~~ 364 (780)
.+.--+.+.-..|+.+..+....+ .+..+|.+...|.-+.=..++.. +.++
T Consensus 366 ~mgyCtf~~fK~La~nYL~~~~~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 366 YMGYCTFEAFKTLASNYLGIEEDH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred EcCCCCHHHHHHHHHHhcCCCCCc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 888889999999999998754433 34555555555554444444444 3444
No 199
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.13 E-value=0.0029 Score=61.30 Aligned_cols=88 Identities=24% Similarity=0.266 Sum_probs=57.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc-CCCHHHHHHHHHHHcCCCcCC---CCCHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-KPDYKAIQNEIAGALGLFLGE---HEDVSERAHLLRQR 247 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~~ 247 (780)
+++|.++|+.|+||||.+.+++.....+ -..+..++... .....+-++..++.++..... ..+..+......+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3689999999999999999999888765 34566777653 345667788888888866432 22344444443344
Q ss_pred hccCc-EEEEEeCCC
Q 037947 248 LKASR-VLVILDDVW 261 (780)
Q Consensus 248 L~~kr-~LlVlDdv~ 261 (780)
.+.++ =++++|=..
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 44444 488888653
No 200
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.06 E-value=0.027 Score=61.91 Aligned_cols=89 Identities=25% Similarity=0.355 Sum_probs=49.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc-CCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-KPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLK 249 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 249 (780)
...+|+|+|++|+||||++..+......+.....+..++... .....+.++...+.++.......+.......+ +.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL-~~l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLL-ERLR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHH-HHhc
Confidence 357899999999999999999988765442233455555432 11223333333444444333322233333333 3333
Q ss_pred cCcEEEEEeCCC
Q 037947 250 ASRVLVILDDVW 261 (780)
Q Consensus 250 ~kr~LlVlDdv~ 261 (780)
+ .=+|++|...
T Consensus 428 ~-~DLVLIDTaG 438 (559)
T PRK12727 428 D-YKLVLIDTAG 438 (559)
T ss_pred c-CCEEEecCCC
Confidence 3 4488888764
No 201
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.05 E-value=0.0031 Score=75.03 Aligned_cols=47 Identities=26% Similarity=0.364 Sum_probs=37.7
Q ss_pred cccCCchHHHHHHHHHHc-------cC--CccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 151 EQFESRMPTFQDIMEALK-------DD--NINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~-------~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
..++|.+..++.+.+.+. .+ ...++.++|+.|+|||.+|+.++....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457799999998888874 11 234789999999999999999988763
No 202
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0058 Score=60.50 Aligned_cols=176 Identities=16% Similarity=0.163 Sum_probs=93.3
Q ss_pred ccCCchHHHHHHHHHHc----------cC--CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHH
Q 037947 152 QFESRMPTFQDIMEALK----------DD--NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAI 219 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~----------~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 219 (780)
++.|-+...+.|.+... .. .-+-|.++|++|.||+.||+.|+..... -|.+||.. ++
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-------TFFSvSSS----DL 202 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-------TFFSVSSS----DL 202 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-------ceEEeehH----HH
Confidence 34466666666666543 11 2467999999999999999999987542 23455543 22
Q ss_pred HHHHHHHcCCCcCCCCCHHHHHHHHHHHhc-cCcEEEEEeCCCCcc---------ccccccCCcccccccccCCCCCcEE
Q 037947 220 QNEIAGALGLFLGEHEDVSERAHLLRQRLK-ASRVLVILDDVWNRL---------DLDAVGIPYKNYQNEIKDDRRRCAM 289 (780)
Q Consensus 220 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~~l~~~~~~s~i 289 (780)
.... ++. .+.+.+.|.+.-+ .|+-+|++|.|+... .-..+...|--.++....+..|.-|
T Consensus 203 vSKW---mGE-------SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 203 VSKW---MGE-------SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred HHHH---hcc-------HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 2222 221 2344555555443 489999999996541 1112222221222333445556666
Q ss_pred EEEecchhHHhhhcC-C-cceEEcCCCChHHHHH-HHHHhhCCCCCCCChhHHHHHHHHHhCCC
Q 037947 290 LLTSRRKDLLYNEMN-S-QKNFLINVLSDQEAVQ-LFEKMSGVFEGPLDFQNLAIKIARECGGL 350 (780)
Q Consensus 290 ivTtr~~~v~~~~~~-~-~~~~~l~~L~~~~~~~-Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 350 (780)
+-.|...-+....+. . ...+ --||++..|.. +|.-+.+. ....-.+.-.+++.++.+|.
T Consensus 273 LgATNiPw~LDsAIRRRFekRI-YIPLPe~~AR~~MF~lhlG~-tp~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRI-YIPLPEAHARARMFKLHLGD-TPHVLTEQDFKELARKTEGY 334 (439)
T ss_pred EecCCCchhHHHHHHHHhhcce-eccCCcHHHhhhhheeccCC-CccccchhhHHHHHhhcCCC
Confidence 666766655421111 1 1111 23667777664 44444442 22222334455666666653
No 203
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=96.99 E-value=0.00034 Score=70.73 Aligned_cols=224 Identities=13% Similarity=0.090 Sum_probs=142.5
Q ss_pred CCCCccEEEeccCcccccc---CchhhcCCCCccEEEecCCCC----CCCCcc-------ccCCCCCCEEEccCccCCC-
Q 037947 531 ECPKLKLFFLFSKKLSLVI---PDLFFEGVPSLQVLSLNGFHF----PSLPST-------LGCLINLQTLSFECCVLGD- 595 (780)
Q Consensus 531 ~~~~L~~L~l~~~~~~~~~---~~~~~~~l~~Lr~L~l~~~~~----~~lp~~-------i~~l~~L~~L~L~~~~~~~- 595 (780)
....+..+.+++|.+...- ....+.+.+.|+.-+++.... ..+|+. +-..++|++|+||.|-+..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 5677889999999886432 222345667888888886532 134443 3456799999999998765
Q ss_pred -c----ccccccCCCcEEEeecCCCCcc--------------ChhhcCCCCCCEEecCCCCCCcccCc----cccCCCcc
Q 037947 596 -V----ATVGALKKLVILSFRNSHIEQL--------------PEEIGQLTRLKLLDLSNCSKLKSIRP----NVISNLPR 652 (780)
Q Consensus 596 -~----~~i~~l~~L~~L~l~~~~l~~l--------------p~~i~~l~~L~~L~l~~~~~l~~~~~----~~l~~l~~ 652 (780)
+ .-|..+..|+.|.|.+|.+... ...+..-++|+.+...+ |.+..-+. ..+...+.
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~ 186 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAFQSHPT 186 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHHHhccc
Confidence 3 3466788999999999977632 22345567899998877 66655432 23455678
Q ss_pred cceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCCCCC-----ccc-cccCccEEEEEecCcc---------
Q 037947 653 LEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMP-----REL-FSVGLERYKIFLGDVW--------- 717 (780)
Q Consensus 653 L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~-----~~~-~~~~L~~L~i~~~~~~--------- 717 (780)
|+++.+..|.+. +.........+..+++|++|++.-|-.+.-- ..+ .+++|+.+++..|..-
T Consensus 187 leevr~~qN~I~---~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~ 263 (382)
T KOG1909|consen 187 LEEVRLSQNGIR---PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD 263 (382)
T ss_pred cceEEEeccccc---CchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence 888888777431 1122334456788999999999877543221 111 4567788777655432
Q ss_pred cccccccccceeEeecCCCccc-----hhHHHHHhcccceeeccccc
Q 037947 718 SWTGKYETSRTLKLKLDNPMYL-----EHGIKMLLRRTEDLHLDKLN 759 (780)
Q Consensus 718 ~~~~~~~~l~~l~L~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~ 759 (780)
.+....|.+..+.+..|..... ..++.. .|.|+.|.|.+|.
T Consensus 264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnLngN~ 309 (382)
T KOG1909|consen 264 ALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNLNGNR 309 (382)
T ss_pred HHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcCCccc
Confidence 1234466777777766543221 122222 6889999998843
No 204
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.97 E-value=0.0031 Score=69.19 Aligned_cols=189 Identities=14% Similarity=0.124 Sum_probs=109.6
Q ss_pred CCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
....+++|-+.....|.+.+..++. ......|+-|+||||+|+.++...--... .....++.=..-++|...
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~-------~~~ePC~~C~~Ck~I~~g 85 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG-------PTAEPCGKCISCKEINEG 85 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC-------CCCCcchhhhhhHhhhcC
Confidence 4456789999999999999886654 56778999999999999999886532210 001111111111222211
Q ss_pred cCCC-----cCCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCc--cccccccCCcccccccccCCCCCcEEEE-Ee
Q 037947 227 LGLF-----LGEHEDVSERAHLLRQRL-----KASRVLVILDDVWNR--LDLDAVGIPYKNYQNEIKDDRRRCAMLL-TS 293 (780)
Q Consensus 227 l~~~-----~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~l~~~~~~s~iiv-Tt 293 (780)
-..+ ..... .-+-.+.|.+.. +++--+.|+|+|.-. ..|..+...+ -....+...|+ ||
T Consensus 86 ~~~DviEiDaASn~-gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTL-------EEPP~hV~FIlATT 157 (515)
T COG2812 86 SLIDVIEIDAASNT-GVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTL-------EEPPSHVKFILATT 157 (515)
T ss_pred Ccccchhhhhhhcc-ChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccc-------ccCccCeEEEEecC
Confidence 0000 00011 112233344433 235559999999655 4455544333 33334555444 55
Q ss_pred cchhHHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChH
Q 037947 294 RRKDLLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPV 352 (780)
Q Consensus 294 r~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 352 (780)
-...+........+.|.++.++.++-...+...+.... -...++...-|++..+|...
T Consensus 158 e~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~-I~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 158 EPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEG-INIEEDALSLIARAAEGSLR 215 (515)
T ss_pred CcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcC-CccCHHHHHHHHHHcCCChh
Confidence 55556555667788999999999998888888775222 22223556667777777544
No 205
>PRK04132 replication factor C small subunit; Provisional
Probab=96.97 E-value=0.013 Score=68.52 Aligned_cols=161 Identities=13% Similarity=0.022 Sum_probs=97.7
Q ss_pred EEc--CCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEE
Q 037947 177 IYG--IGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVL 254 (780)
Q Consensus 177 I~G--~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~L 254 (780)
+.| |.++||||+|..+++..-....-...+-+++|...++..+. +++..+....+. -..+.-+
T Consensus 569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR-~iIk~~a~~~~~--------------~~~~~KV 633 (846)
T PRK04132 569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIR-EKVKEFARTKPI--------------GGASFKI 633 (846)
T ss_pred hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHH-HHHHHHHhcCCc--------------CCCCCEE
Confidence 346 88999999999999986332111246777777765655443 333322110000 0124579
Q ss_pred EEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEecchh-HHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCC
Q 037947 255 VILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKD-LLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFE 331 (780)
Q Consensus 255 lVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~ 331 (780)
+|+|+++... +.+.+...+ ......+++|++|.+.. +..........+++.+++.++..+.+...+....
T Consensus 634 vIIDEaD~Lt~~AQnALLk~l-------Eep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg 706 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTM-------EMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG 706 (846)
T ss_pred EEEECcccCCHHHHHHHHHHh-------hCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 9999998774 333333332 33334667666665543 3233345567899999999999888877654221
Q ss_pred CCCChhHHHHHHHHHhCCChHHHHHHHHH
Q 037947 332 GPLDFQNLAIKIARECGGLPVAITTVATA 360 (780)
Q Consensus 332 ~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 360 (780)
-+--.+....|++.++|.+..+..+-..
T Consensus 707 -i~i~~e~L~~Ia~~s~GDlR~AIn~Lq~ 734 (846)
T PRK04132 707 -LELTEEGLQAILYIAEGDMRRAINILQA 734 (846)
T ss_pred -CCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1112467889999999998655544433
No 206
>PRK07261 topology modulation protein; Provisional
Probab=96.97 E-value=0.0028 Score=60.15 Aligned_cols=66 Identities=20% Similarity=0.236 Sum_probs=41.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcc-CCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCc
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVMED-KLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASR 252 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 252 (780)
.|.|+|++|+||||||+.+....... -+.|...|-... ...+.++....+.+.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhCCC
Confidence 48999999999999999998765322 124445552110 11123455556666676666
Q ss_pred EEEEEeCCCC
Q 037947 253 VLVILDDVWN 262 (780)
Q Consensus 253 ~LlVlDdv~~ 262 (780)
.|+|+...
T Consensus 61 --wIidg~~~ 68 (171)
T PRK07261 61 --WIIDGNYS 68 (171)
T ss_pred --EEEcCcch
Confidence 67787644
No 207
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.96 E-value=0.017 Score=65.13 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=41.5
Q ss_pred CCccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
....+++|.+..++.+...+......-|.|+|++|+|||++|+.+++...
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 111 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAK 111 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 44567899999999998887766666788999999999999999987643
No 208
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.95 E-value=0.026 Score=59.58 Aligned_cols=176 Identities=15% Similarity=0.161 Sum_probs=96.6
Q ss_pred HHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccCCCC---e-----EEEEEEccCCCHHHHHHHHHHHcCC
Q 037947 159 TFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDKLFD---E-----VVMVVVSQKPDYKAIQNEIAGALGL 229 (780)
Q Consensus 159 ~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~-----~~wv~vs~~~~~~~~~~~i~~~l~~ 229 (780)
.-+++...+..+++ ..+.+.|+.|+||+++|..++...--...-+ | +-++..+..+|+..+ ..
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p 81 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------TP 81 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ec
Confidence 34567777766554 5778999999999999999988763211100 0 000000011110000 00
Q ss_pred CcCCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEecch-hHHhh
Q 037947 230 FLGEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRK-DLLYN 301 (780)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~-~v~~~ 301 (780)
......-..+.++.+.+.+ .+++-++|+|+++... .-+.+...+ .....++.+|++|.+. .+...
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtL-------EEPp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTL-------EEPPENTWFFLACREPARLLAT 154 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHh-------cCCCCCeEEEEEECChhhChHH
Confidence 0000000112233344444 2466699999987663 222222222 3344566666666654 44444
Q ss_pred hcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHH
Q 037947 302 EMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAIT 355 (780)
Q Consensus 302 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~ 355 (780)
.......+.+.+++.+++.+.+....+ . -.+.+..+++.++|.|....
T Consensus 155 IrSRCq~~~~~~~~~~~~~~~L~~~~~---~---~~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 155 LRSRCRLHYLAPPPEQYALTWLSREVT---M---SQDALLAALRLSAGAPGAAL 202 (334)
T ss_pred HHhccccccCCCCCHHHHHHHHHHccC---C---CHHHHHHHHHHcCCCHHHHH
Confidence 455567899999999999888865421 1 12346788999999997443
No 209
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.94 E-value=0.0037 Score=61.67 Aligned_cols=87 Identities=20% Similarity=0.134 Sum_probs=54.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHc-C---CC--cCCCCCH---HHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGAL-G---LF--LGEHEDV---SERA 241 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l-~---~~--~~~~~~~---~~~~ 241 (780)
...++.|+|++|+|||++|.+++...... ...++|++... ++...+.+. ++.. . .. .....+. ....
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 35799999999999999999998876543 46789999876 666555443 3221 0 00 0001112 2234
Q ss_pred HHHHHHhcc-CcEEEEEeCCC
Q 037947 242 HLLRQRLKA-SRVLVILDDVW 261 (780)
Q Consensus 242 ~~l~~~L~~-kr~LlVlDdv~ 261 (780)
..+.+.+.. +.-+||+|.+.
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis 107 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFT 107 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcH
Confidence 445555544 45588888874
No 210
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.93 E-value=0.01 Score=57.71 Aligned_cols=177 Identities=20% Similarity=0.301 Sum_probs=95.2
Q ss_pred ccccCCchHHHH---HHHHHHccC------CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHH
Q 037947 150 YEQFESRMPTFQ---DIMEALKDD------NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQ 220 (780)
Q Consensus 150 ~~~~~gr~~~~~---~l~~~L~~~------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 220 (780)
.++++|.++... -|++.|.++ ..+-|..+|++|.|||-+|+.+++..++- | +.+.. .++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp--~-----l~vka----t~l- 187 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP--L-----LLVKA----TEL- 187 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc--e-----EEech----HHH-
Confidence 456778776554 366777643 46789999999999999999999987653 2 12211 111
Q ss_pred HHHHHHcCCCcCCCCCHHHHHHHHHHHhc-cCcEEEEEeCCCCcc---ccccccCCccccc-------ccccCCCCCcEE
Q 037947 221 NEIAGALGLFLGEHEDVSERAHLLRQRLK-ASRVLVILDDVWNRL---DLDAVGIPYKNYQ-------NEIKDDRRRCAM 289 (780)
Q Consensus 221 ~~i~~~l~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~---~~~~l~~~~~~~~-------~~l~~~~~~s~i 289 (780)
|-+..| +....+..+.+.-+ .-++++++|.++... .++.+........ ..+. .+.|...
T Consensus 188 --iGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~-eneGVvt 257 (368)
T COG1223 188 --IGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK-ENEGVVT 257 (368)
T ss_pred --HHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc-cCCceEE
Confidence 111111 12233444444433 378999999885541 1122221111111 1112 3446666
Q ss_pred EEEecchhHHhhhcC--CcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCC
Q 037947 290 LLTSRRKDLLYNEMN--SQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGL 350 (780)
Q Consensus 290 ivTtr~~~v~~~~~~--~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 350 (780)
|..|.+......... -...++...-+++|-..++...+..-.-+-+ .-.+.++.+.+|+
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~--~~~~~~~~~t~g~ 318 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD--ADLRYLAAKTKGM 318 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc--cCHHHHHHHhCCC
Confidence 666666655322211 1234666666788888888887752221111 1144555556554
No 211
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.0027 Score=72.51 Aligned_cols=158 Identities=14% Similarity=0.201 Sum_probs=93.4
Q ss_pred CccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCC----eEEEEEEccCCCHHHHHHHHH
Q 037947 149 GYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFD----EVVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~~~~~~~~~i~ 224 (780)
..++++||+++++++++.|....-.--.++|.+|+|||++|.-++.+....+-.. ..++. .+ +.
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-----LD-------~g 235 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-----LD-------LG 235 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-----ec-------HH
Confidence 3567899999999999999843333335789999999999999988875542111 01110 01 11
Q ss_pred HHcCCCcCCCCCHHHHHHHHHHHhcc-CcEEEEEeCCCCccc--------ccc---ccCCcccccccccCCCCCcEEEEE
Q 037947 225 GALGLFLGEHEDVSERAHLLRQRLKA-SRVLVILDDVWNRLD--------LDA---VGIPYKNYQNEIKDDRRRCAMLLT 292 (780)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~~--------~~~---l~~~~~~~~~~l~~~~~~s~iivT 292 (780)
.-.... .-..+.+++.+.+.+.++. .+.+|++|.+...-. .+. ++.++ ..+.--.|-.|
T Consensus 236 ~LvAGa-kyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL--------ARGeL~~IGAT 306 (786)
T COG0542 236 SLVAGA-KYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPAL--------ARGELRCIGAT 306 (786)
T ss_pred HHhccc-cccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHH--------hcCCeEEEEec
Confidence 111111 1112367777777777764 689999999865411 111 11111 11112235556
Q ss_pred ecchhHH-----hhhcCCcceEEcCCCChHHHHHHHHHhh
Q 037947 293 SRRKDLL-----YNEMNSQKNFLINVLSDQEAVQLFEKMS 327 (780)
Q Consensus 293 tr~~~v~-----~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 327 (780)
|-++.-- .......+.+.+...+.+++..++.-..
T Consensus 307 T~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 307 TLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred cHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 6554321 1122345788899999999999887544
No 212
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.91 E-value=0.019 Score=58.66 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=36.4
Q ss_pred HHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHH
Q 037947 158 PTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQ 220 (780)
Q Consensus 158 ~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 220 (780)
..++++..++..+ .-|.+.|++|+|||++|+.+++... ....++++....+..+++
T Consensus 9 ~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 9 RVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHh
Confidence 3445555555443 3467999999999999999987431 124556666655555554
No 213
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.90 E-value=0.038 Score=58.17 Aligned_cols=92 Identities=21% Similarity=0.225 Sum_probs=57.7
Q ss_pred cCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEecc-hhHHhhhcCCcceEEcCCCChHHHHHHHHHh
Q 037947 250 ASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSRR-KDLLYNEMNSQKNFLINVLSDQEAVQLFEKM 326 (780)
Q Consensus 250 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~-~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 326 (780)
+++-++|+|+++... ..+.+...+ -...+++.+|++|.+ ..+..........+.+.+++.++..+.+...
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtL-------EEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTL-------EEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHh-------cCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc
Confidence 355588999987663 333333222 334456665555555 4444444455678999999999999988765
Q ss_pred hCCCCCCCChhHHHHHHHHHhCCChHHHHHH
Q 037947 327 SGVFEGPLDFQNLAIKIARECGGLPVAITTV 357 (780)
Q Consensus 327 ~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 357 (780)
. . +. ...++..++|.|..+..+
T Consensus 204 ~---~--~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 204 G---V--AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred C---C--Ch----HHHHHHHcCCCHHHHHHH
Confidence 2 1 11 234577889999755443
No 214
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.87 E-value=0.003 Score=60.42 Aligned_cols=36 Identities=36% Similarity=0.528 Sum_probs=29.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEE
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMV 208 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 208 (780)
+..+|.+.|+.|+||||+|+.+++..... +...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~~--~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKLK--YSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEE
Confidence 45699999999999999999999988654 5555555
No 215
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.86 E-value=0.054 Score=57.54 Aligned_cols=43 Identities=33% Similarity=0.581 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHcc---CCccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 157 MPTFQDIMEALKD---DNINVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 157 ~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
+...+.|.+.+.+ +...+|+|.|.-|+||||+.+.+.+.....
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3445566666664 467899999999999999999999988765
No 216
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.83 E-value=0.0038 Score=69.25 Aligned_cols=75 Identities=20% Similarity=0.261 Sum_probs=54.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA 250 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 250 (780)
.-++..+.|++|+||||||..++++.. -.++=|++|+.-+...+-..|...+........ .+
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG-----YsVvEINASDeRt~~~v~~kI~~avq~~s~l~a-------------ds 386 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG-----YSVVEINASDERTAPMVKEKIENAVQNHSVLDA-------------DS 386 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC-----ceEEEecccccccHHHHHHHHHHHHhhcccccc-------------CC
Confidence 457899999999999999999998752 236778888888877777766655432211110 14
Q ss_pred CcEEEEEeCCCCc
Q 037947 251 SRVLVILDDVWNR 263 (780)
Q Consensus 251 kr~LlVlDdv~~~ 263 (780)
++.-||+|.++..
T Consensus 387 rP~CLViDEIDGa 399 (877)
T KOG1969|consen 387 RPVCLVIDEIDGA 399 (877)
T ss_pred CcceEEEecccCC
Confidence 7788999998665
No 217
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.83 E-value=0.015 Score=68.82 Aligned_cols=178 Identities=15% Similarity=0.183 Sum_probs=92.0
Q ss_pred cccCCchHHHHHHHHHHc-------------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHH
Q 037947 151 EQFESRMPTFQDIMEALK-------------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYK 217 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 217 (780)
.++.|.+..++.|.+.+. -...+-|.++|++|+|||++|+.+++..... | +.++..
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~--f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN--F-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC--E-----EEEehH----
Confidence 445677766666655543 1234568899999999999999999876422 2 222221
Q ss_pred HHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCcccccc------c-cCCccccccccc--CCCCCc
Q 037947 218 AIQNEIAGALGLFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNRLDLDA------V-GIPYKNYQNEIK--DDRRRC 287 (780)
Q Consensus 218 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~------l-~~~~~~~~~~l~--~~~~~s 287 (780)
++ +... ... .+...+.+.... +..+.+|++|+++....-.. . ......++..+. ....+.
T Consensus 522 ~l----~~~~----vGe--se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 EI----LSKW----VGE--SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred HH----hhcc----cCc--HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 11 1110 011 122233333322 34779999999865421000 0 000000111111 122344
Q ss_pred EEEEEecchhHHh-hhc---CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 288 AMLLTSRRKDLLY-NEM---NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 288 ~iivTtr~~~v~~-~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
-||.||....... ... .-...+.+++.+.++-.++|..+.......+.. -...+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~--~l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDV--DLEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHcCCCC
Confidence 5666776654331 112 234578888888888888887665432222211 1355667777754
No 218
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.83 E-value=0.0055 Score=60.17 Aligned_cols=208 Identities=12% Similarity=0.092 Sum_probs=117.0
Q ss_pred ccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhc----cCCCCeEEEEEEccCC-------------
Q 037947 152 QFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVME----DKLFDEVVMVVVSQKP------------- 214 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~------------- 214 (780)
.+.++++....+.........+-..++|++|.||-|.+..+.+..-. +-.-+...|.+-|+.-
T Consensus 14 ~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlE 93 (351)
T KOG2035|consen 14 ELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLE 93 (351)
T ss_pred hcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEE
Confidence 35567777777777666667888999999999999998888877532 1123445565544430
Q ss_pred --------CHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcE-EEEEeCCCCc--cccccccCCcccccccccCC
Q 037947 215 --------DYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRV-LVILDDVWNR--LDLDAVGIPYKNYQNEIKDD 283 (780)
Q Consensus 215 --------~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~--~~~~~l~~~~~~~~~~l~~~ 283 (780)
.-+-+.++++++.+....- +.-..+.| ++|+-.+++. +.-.+++... ..-
T Consensus 94 itPSDaG~~DRvViQellKevAQt~qi------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTM-------EkY 154 (351)
T KOG2035|consen 94 ITPSDAGNYDRVVIQELLKEVAQTQQI------------ETQGQRPFKVVVINEADELTRDAQHALRRTM-------EKY 154 (351)
T ss_pred eChhhcCcccHHHHHHHHHHHHhhcch------------hhccccceEEEEEechHhhhHHHHHHHHHHH-------HHH
Confidence 0112222233222211000 00012344 5666665444 2222222221 122
Q ss_pred CCCcEEEEEecchh-HHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHHh
Q 037947 284 RRRCAMLLTSRRKD-LLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATALR 362 (780)
Q Consensus 284 ~~~s~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~ 362 (780)
...+|+|+...+-. +........-.++++..+++|....+++......- .--.+++.+|+++++|.---...+-...+
T Consensus 155 s~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~lp~~~l~rIa~kS~~nLRrAllmlE~~~ 233 (351)
T KOG2035|consen 155 SSNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QLPKELLKRIAEKSNRNLRRALLMLEAVR 233 (351)
T ss_pred hcCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cCcHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 34567666433321 11112233457899999999999999887752221 11268999999999998765555555544
Q ss_pred --CC---------ChhHHHHHHHHHhcC
Q 037947 363 --NK---------SLFVWKDALLQLRSS 379 (780)
Q Consensus 363 --~~---------~~~~w~~~~~~l~~~ 379 (780)
+. +.-+|+-++.++...
T Consensus 234 ~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 234 VNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred hccccccccCCCCCCccHHHHHHHHHHH
Confidence 11 355799888776544
No 219
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.033 Score=60.87 Aligned_cols=94 Identities=17% Similarity=0.238 Sum_probs=59.4
Q ss_pred ccccCCchHHHHHHHHHHc---c---------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHH
Q 037947 150 YEQFESRMPTFQDIMEALK---D---------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYK 217 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 217 (780)
..++-|-+..+.++.+.+. . ...+-|.++|++|+|||.||+.++++..+- |+.++..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch----
Confidence 4556688888888777664 1 235678899999999999999999987654 3333332
Q ss_pred HHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCc
Q 037947 218 AIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNR 263 (780)
Q Consensus 218 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~ 263 (780)
+|+.+.. .++ .+...+...+.-...++++++|+++-.
T Consensus 258 ----eivSGvS----GES-EkkiRelF~~A~~~aPcivFiDeIDAI 294 (802)
T KOG0733|consen 258 ----EIVSGVS----GES-EKKIRELFDQAKSNAPCIVFIDEIDAI 294 (802)
T ss_pred ----hhhcccC----ccc-HHHHHHHHHHHhccCCeEEEeeccccc
Confidence 2222221 111 222222233333458999999998655
No 220
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.82 E-value=0.0052 Score=61.42 Aligned_cols=87 Identities=24% Similarity=0.279 Sum_probs=53.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH----c-CC-CcCCCCCH---HHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA----L-GL-FLGEHEDV---SERA 241 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~----l-~~-~~~~~~~~---~~~~ 241 (780)
...++.|+|.+|+|||++|.+++...... -..++|++.. .++...+. ++... + .. ......+. .+..
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 97 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEAI 97 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHHH
Confidence 35799999999999999999998876543 4678899887 55555443 23322 0 00 00011112 2233
Q ss_pred HHHHHHhccCcEEEEEeCCC
Q 037947 242 HLLRQRLKASRVLVILDDVW 261 (780)
Q Consensus 242 ~~l~~~L~~kr~LlVlDdv~ 261 (780)
+.+...++.+.-++|+|.+.
T Consensus 98 ~~~~~~~~~~~~lvVIDsi~ 117 (225)
T PRK09361 98 RKAEKLAKENVGLIVLDSAT 117 (225)
T ss_pred HHHHHHHHhcccEEEEeCcH
Confidence 34444444566688999873
No 221
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.82 E-value=0.0098 Score=63.21 Aligned_cols=142 Identities=14% Similarity=0.131 Sum_probs=82.3
Q ss_pred cCCchHHHHHHHHHHc-cCCccE-EEEEcCCCChHHHHHHHHHHHHhccC-------------------CCCeEEEEEEc
Q 037947 153 FESRMPTFQDIMEALK-DDNINV-IGIYGIGGVGKTTLVKQVARRVMEDK-------------------LFDEVVMVVVS 211 (780)
Q Consensus 153 ~~gr~~~~~~l~~~L~-~~~~~v-v~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs 211 (780)
++|-+....++..+.. ..+.+- +.++|++|+||||+|..+.+...-.. ..+.+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 4566777778888877 344554 99999999999999999999875322 11334444444
Q ss_pred cCCC---HHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc--cccccCCcccccccccCCCCC
Q 037947 212 QKPD---YKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRRR 286 (780)
Q Consensus 212 ~~~~---~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~~ 286 (780)
.... ..+..+++.+....... .++.-++++|+++.... -..+...+ ......
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~l-------Eep~~~ 139 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTL-------EEPPKN 139 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHh-------ccCCCC
Confidence 4433 23333333333321111 24667999999977633 22222222 344556
Q ss_pred cEEEEEecchh-HHhhhcCCcceEEcCCCChH
Q 037947 287 CAMLLTSRRKD-LLYNEMNSQKNFLINVLSDQ 317 (780)
Q Consensus 287 s~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~ 317 (780)
+.+|++|.... +..........+++.+.+..
T Consensus 140 ~~~il~~n~~~~il~tI~SRc~~i~f~~~~~~ 171 (325)
T COG0470 140 TRFILITNDPSKILPTIRSRCQRIRFKPPSRL 171 (325)
T ss_pred eEEEEEcCChhhccchhhhcceeeecCCchHH
Confidence 77777777443 32223344567777774333
No 222
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.80 E-value=0.0072 Score=71.32 Aligned_cols=102 Identities=19% Similarity=0.237 Sum_probs=59.0
Q ss_pred cccCCchHHHHHHHHHHcc-------C--CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHH
Q 037947 151 EQFESRMPTFQDIMEALKD-------D--NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQN 221 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~~-------~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 221 (780)
..++|.+..++.+.+.+.. + ...++.++|+.|+|||+||+.+++.. +...+.++.+.-.+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcc----
Confidence 3456777778888777652 1 23467899999999999999999876 2234555544422111
Q ss_pred HHHHHcCCCcCCCCCHHHHHHHHHHHhccCcE-EEEEeCCCCc
Q 037947 222 EIAGALGLFLGEHEDVSERAHLLRQRLKASRV-LVILDDVWNR 263 (780)
Q Consensus 222 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~ 263 (780)
.+...++....... .+....+.+.++.+++ +++||+++..
T Consensus 525 ~~~~lig~~~gyvg--~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 525 TVSRLIGAPPGYVG--FEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred cHHHHhcCCCCCcc--cchhhHHHHHHHhCCCeEEEEechhhc
Confidence 11222222211100 0112334555555444 9999999766
No 223
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.79 E-value=0.012 Score=69.71 Aligned_cols=182 Identities=15% Similarity=0.170 Sum_probs=91.9
Q ss_pred CccccCCchHHHHHHHHHHcc-------------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC
Q 037947 149 GYEQFESRMPTFQDIMEALKD-------------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD 215 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (780)
..+++.|.++.++++.+++.- ...+-|.++|++|+|||+||+.+++..... ++.++..
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~-------~i~i~~~-- 246 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY-------FISINGP-- 246 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-------EEEEecH--
Confidence 345677999888888776631 234678899999999999999998876321 2222211
Q ss_pred HHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccccc-----ccc-CCcccccccccC-CCCCcE
Q 037947 216 YKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLDLD-----AVG-IPYKNYQNEIKD-DRRRCA 288 (780)
Q Consensus 216 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~-----~l~-~~~~~~~~~l~~-~~~~s~ 288 (780)
++.. .. .. .........+.......+.+|+||+++....-. .+. .....+...+.. ...+..
T Consensus 247 --~i~~----~~----~g-~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 247 --EIMS----KY----YG-ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred --HHhc----cc----cc-HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 1110 00 00 001122222233334567899999985542100 000 000001111111 112333
Q ss_pred EEE-EecchhHHhhhc----CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChH
Q 037947 289 MLL-TSRRKDLLYNEM----NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPV 352 (780)
Q Consensus 289 iiv-Ttr~~~v~~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 352 (780)
++| ||....-..... .-...+.+...+.++-.+++..........++ .....+++.+.|.--
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d--~~l~~la~~t~G~~g 382 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAED--VDLDKLAEVTHGFVG 382 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccc--cCHHHHHHhCCCCCH
Confidence 444 554432111111 11346778888888888888865532221111 224677788888654
No 224
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.79 E-value=0.052 Score=60.46 Aligned_cols=202 Identities=17% Similarity=0.127 Sum_probs=118.3
Q ss_pred ccccCCchHHHHHHHHHHc----c-CCccEEEEEcCCCChHHHHHHHHHHHHh---ccCCCCeEEEE--EEccCCCHHHH
Q 037947 150 YEQFESRMPTFQDIMEALK----D-DNINVIGIYGIGGVGKTTLVKQVARRVM---EDKLFDEVVMV--VVSQKPDYKAI 219 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~----~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~F~~~~wv--~vs~~~~~~~~ 219 (780)
+..+-+|+.+..+|-+.+. . .....+-|.|.+|+|||..+..|.+..+ .++.-....|| +.-.-....++
T Consensus 395 p~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 395 PESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREI 474 (767)
T ss_pred cccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHH
Confidence 3445688999888888775 3 3345899999999999999999998664 22223333334 44445678999
Q ss_pred HHHHHHHcCCCcCCCCCHHHHHHHHHHHhc-----cCcEEEEEeCCCCccc--cccccCCcccccccccCCCCCcEEEEE
Q 037947 220 QNEIAGALGLFLGEHEDVSERAHLLRQRLK-----ASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRRRCAMLLT 292 (780)
Q Consensus 220 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~~s~iivT 292 (780)
...|..++...... .......|..+.. .+.+++++|+++..-. -+-+...|. +...++||++|.
T Consensus 475 Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fd------Wpt~~~sKLvvi 545 (767)
T KOG1514|consen 475 YEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFD------WPTLKNSKLVVI 545 (767)
T ss_pred HHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhc------CCcCCCCceEEE
Confidence 99999988654322 2334445555553 3678999999855522 111111121 345667786654
Q ss_pred ecch--hHHhhh-------cCCcceEEcCCCChHHHHHHHHHhhCCC--CCCCChhHHHHHHHHHhCCChHHHHHHHHH
Q 037947 293 SRRK--DLLYNE-------MNSQKNFLINVLSDQEAVQLFEKMSGVF--EGPLDFQNLAIKIARECGGLPVAITTVATA 360 (780)
Q Consensus 293 tr~~--~v~~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 360 (780)
+-.. +...+. .-....+...|.++++-.++...+..+. ......+-++++|+.--|..-.|+.+.-++
T Consensus 546 ~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 546 AIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred EecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3221 111111 1123457778888888888877766522 223333444555555555555555444444
No 225
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.79 E-value=0.0021 Score=67.10 Aligned_cols=47 Identities=21% Similarity=0.342 Sum_probs=40.9
Q ss_pred ccCCchHHHHHHHHHHcc------CCccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 152 QFESRMPTFQDIMEALKD------DNINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~~------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
.++|-++.++++++++.. .+.+++.++|++|+||||||+.+.+....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 688999999999999862 34588999999999999999999998754
No 226
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.76 E-value=0.0012 Score=58.64 Aligned_cols=23 Identities=52% Similarity=0.680 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+|.|.|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 227
>PRK08181 transposase; Validated
Probab=96.76 E-value=0.002 Score=65.49 Aligned_cols=79 Identities=20% Similarity=0.183 Sum_probs=47.5
Q ss_pred HHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHH
Q 037947 165 EALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLL 244 (780)
Q Consensus 165 ~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l 244 (780)
+|+. +..-+.++|++|+|||.||..+.+....+ ...++|++ ..+++..+..... . .+.. .+
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~------~~~L~~~l~~a~~----~-~~~~----~~ 161 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTR------TTDLVQKLQVARR----E-LQLE----SA 161 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeee------HHHHHHHHHHHHh----C-CcHH----HH
Confidence 4554 33458999999999999999999877544 23455554 3455555543321 1 1111 12
Q ss_pred HHHhccCcEEEEEeCCCCc
Q 037947 245 RQRLKASRVLVILDDVWNR 263 (780)
Q Consensus 245 ~~~L~~kr~LlVlDdv~~~ 263 (780)
.+.+. +-=||||||+...
T Consensus 162 l~~l~-~~dLLIIDDlg~~ 179 (269)
T PRK08181 162 IAKLD-KFDLLILDDLAYV 179 (269)
T ss_pred HHHHh-cCCEEEEeccccc
Confidence 22222 3449999999544
No 228
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.75 E-value=0.0098 Score=59.49 Aligned_cols=92 Identities=21% Similarity=0.182 Sum_probs=57.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccC----CCCeEEEEEEccCCCHHHHHHHHHHHcCCCc---------CCCCCH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDK----LFDEVVMVVVSQKPDYKAIQNEIAGALGLFL---------GEHEDV 237 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------~~~~~~ 237 (780)
...++.|+|++|+|||+||..++....... .=..++|++....++...+. ++.+..+... ....+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYNG 96 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCCH
Confidence 357999999999999999999987654331 01567899988777765544 3333322111 111234
Q ss_pred HHHHHHHHHHhc---c-CcEEEEEeCCCCc
Q 037947 238 SERAHLLRQRLK---A-SRVLVILDDVWNR 263 (780)
Q Consensus 238 ~~~~~~l~~~L~---~-kr~LlVlDdv~~~ 263 (780)
++....+.+..+ . +.-++|+|.+...
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~lvVIDsis~l 126 (226)
T cd01393 97 EQQLEIVEELERIMSSGRVDLVVVDSVAAL 126 (226)
T ss_pred HHHHHHHHHHHHHhhcCCeeEEEEcCcchh
Confidence 455555555443 3 4458999998543
No 229
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.73 E-value=0.0089 Score=60.49 Aligned_cols=76 Identities=21% Similarity=0.261 Sum_probs=48.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA 250 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 250 (780)
+..-+.++|.+|+|||.||..+.+... +. --.+.+++ ..+++.++...... . ....+|.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~-g~sv~f~~------~~el~~~Lk~~~~~----~----~~~~~l~~~l~- 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-KA-GISVLFIT------APDLLSKLKAAFDE----G----RLEEKLLRELK- 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-Hc-CCeEEEEE------HHHHHHHHHHHHhc----C----chHHHHHHHhh-
Confidence 667799999999999999999999987 42 23455554 44566666655442 0 11122333222
Q ss_pred CcEEEEEeCCCCc
Q 037947 251 SRVLVILDDVWNR 263 (780)
Q Consensus 251 kr~LlVlDdv~~~ 263 (780)
+-=||||||+...
T Consensus 167 ~~dlLIiDDlG~~ 179 (254)
T COG1484 167 KVDLLIIDDIGYE 179 (254)
T ss_pred cCCEEEEecccCc
Confidence 2238999998553
No 230
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.73 E-value=0.0074 Score=60.78 Aligned_cols=91 Identities=25% Similarity=0.179 Sum_probs=55.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCC----CCeEEEEEEccCCCHHHHHHHHHHHcCCCcCC---------CCCH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKL----FDEVVMVVVSQKPDYKAIQNEIAGALGLFLGE---------HEDV 237 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~~ 237 (780)
...++.|+|++|+|||+||.+++-....... ...++|++....++..++.. +++..+..... ..+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~-~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ-IAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH-HHHHhccChHhHhcCEEEEecCCH
Confidence 3579999999999999999999865432221 25789999888777655433 34443322110 0112
Q ss_pred H---HHHHHHHHHhcc--CcEEEEEeCCCC
Q 037947 238 S---ERAHLLRQRLKA--SRVLVILDDVWN 262 (780)
Q Consensus 238 ~---~~~~~l~~~L~~--kr~LlVlDdv~~ 262 (780)
+ .....+.+.+.. +.-+||+|.+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 2 233444444433 556888998743
No 231
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.71 E-value=0.024 Score=51.60 Aligned_cols=90 Identities=10% Similarity=0.116 Sum_probs=69.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHhhhhhccCcccCCCCCchhhh
Q 037947 28 HHQSYVEELSQVLTRLKYEKEDVRSAVDYAMRKGEEVYEDVKCWLSHVDRFTENVEAILADEGEAKKPCFLGLCPNLFKR 107 (780)
Q Consensus 28 ~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~~Wl~~~~~~~~d~ed~ld~~~~~~~~~~~~~~~~~~~~ 107 (780)
+..+.....+.-+++|...+++|..++++.+.-+...+...+.-++++.+...+++++++.+...+ ++++...
T Consensus 24 ~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~-------r~n~~kk 96 (147)
T PF05659_consen 24 DASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVR-------RWNLYKK 96 (147)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcccc-------HHHHHhh
Confidence 334444556677888888888888998888877666666668889999999999999999876543 3567777
Q ss_pred hHhhHHHHHHHHHHHHH
Q 037947 108 YNLSKQAGKAAREGSDL 124 (780)
Q Consensus 108 ~~~~~~i~~~~~~l~~~ 124 (780)
++.+++|+++.+.+...
T Consensus 97 ~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 97 PRYARKIEELEESLRRF 113 (147)
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 88889998888887765
No 232
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.71 E-value=0.0097 Score=66.30 Aligned_cols=67 Identities=19% Similarity=0.341 Sum_probs=47.3
Q ss_pred CcccccccCCccccCCchHHHHHHHHHHcc-----CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEE
Q 037947 140 EWTETLHLRGYEQFESRMPTFQDIMEALKD-----DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVV 210 (780)
Q Consensus 140 ~~~~~~~~~~~~~~~gr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 210 (780)
+|++...|....++.--.+.++++..||.. ...+++.+.|++|+||||.++.+++... |+.+=|.+.
T Consensus 8 ~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 8 PWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred ccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 344433334444555556778888888862 2357899999999999999999998863 666777643
No 233
>PRK12377 putative replication protein; Provisional
Probab=96.71 E-value=0.01 Score=59.52 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=47.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA 250 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 250 (780)
+...+.++|.+|+|||.||..+++....+ ...++++++. +++..+-..... ..+.. .+.+.+ .
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~----~~~~~----~~l~~l-~ 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDN----GQSGE----KFLQEL-C 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhc----cchHH----HHHHHh-c
Confidence 34678999999999999999999988754 3345666554 455555433321 11011 222223 3
Q ss_pred CcEEEEEeCCCC
Q 037947 251 SRVLVILDDVWN 262 (780)
Q Consensus 251 kr~LlVlDdv~~ 262 (780)
+--||||||+..
T Consensus 163 ~~dLLiIDDlg~ 174 (248)
T PRK12377 163 KVDLLVLDEIGI 174 (248)
T ss_pred CCCEEEEcCCCC
Confidence 556999999943
No 234
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.013 Score=65.05 Aligned_cols=160 Identities=16% Similarity=0.089 Sum_probs=86.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCC--CHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhc
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKP--DYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLK 249 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 249 (780)
..-|.|.|+.|+|||+||+.+++... +++.-++.+|+++.-. ..+.+++.+. ....+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~-----------------~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLN-----------------NVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHH-----------------HHHHHHHh
Confidence 35688999999999999999999887 4455566777776532 2333332221 23334455
Q ss_pred cCcEEEEEeCCCCcc--------ccccccCCccccc-ccc-cCCCCCcE--EEEEecchhHHhhh----cCCcceEEcCC
Q 037947 250 ASRVLVILDDVWNRL--------DLDAVGIPYKNYQ-NEI-KDDRRRCA--MLLTSRRKDLLYNE----MNSQKNFLINV 313 (780)
Q Consensus 250 ~kr~LlVlDdv~~~~--------~~~~l~~~~~~~~-~~l-~~~~~~s~--iivTtr~~~v~~~~----~~~~~~~~l~~ 313 (780)
-.+-+|||||++... +|......+..++ +.+ .....+.+ +|.|.....-.... .--..+..+++
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 678899999985441 2222111111111 111 11223333 44454443321111 11234677888
Q ss_pred CChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCC
Q 037947 314 LSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGL 350 (780)
Q Consensus 314 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl 350 (780)
+...+-.++++....... .....+...-+..+|+|.
T Consensus 573 p~~~~R~~IL~~~~s~~~-~~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNL-SDITMDDLDFLSVKTEGY 608 (952)
T ss_pred cchhHHHHHHHHHHHhhh-hhhhhHHHHHHHHhcCCc
Confidence 888877777766553222 222223344477788774
No 235
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.68 E-value=0.08 Score=57.77 Aligned_cols=90 Identities=22% Similarity=0.296 Sum_probs=54.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc-CCCHHHHHHHHHHHcCCCcCCC---CCHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-KPDYKAIQNEIAGALGLFLGEH---EDVSERAHLLRQ 246 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 246 (780)
+..+|.++|++|+||||+|..++.....++ + .+..|++.. .+...+.++.+..+++...... .+.........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g-~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKG-L-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcC-C-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 457899999999999999999998876542 2 344444432 2233555666777776543322 223333333334
Q ss_pred HhccCcEEEEEeCCCCc
Q 037947 247 RLKASRVLVILDDVWNR 263 (780)
Q Consensus 247 ~L~~kr~LlVlDdv~~~ 263 (780)
.+.+. -+||+|.....
T Consensus 172 ~~~~~-DvVIIDTAGr~ 187 (437)
T PRK00771 172 KFKKA-DVIIVDTAGRH 187 (437)
T ss_pred HhhcC-CEEEEECCCcc
Confidence 44444 57888876433
No 236
>PRK09183 transposase/IS protein; Provisional
Probab=96.68 E-value=0.0036 Score=63.62 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
...+.|+|++|+|||+||..+.......
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~ 129 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRA 129 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 4568899999999999999998775443
No 237
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.68 E-value=0.0078 Score=62.52 Aligned_cols=86 Identities=21% Similarity=0.227 Sum_probs=57.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCc-----CCCCCHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFL-----GEHEDVSERAHLLR 245 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 245 (780)
..+++-|+|++|+||||||.+++...... -..++|++..+.++.. .+++++... ....+.++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 45789999999999999999988776543 4568899988776653 344444321 11223455555555
Q ss_pred HHhcc-CcEEEEEeCCCCc
Q 037947 246 QRLKA-SRVLVILDDVWNR 263 (780)
Q Consensus 246 ~~L~~-kr~LlVlDdv~~~ 263 (780)
..++. ..-+||+|.|-..
T Consensus 127 ~li~s~~~~lIVIDSvaal 145 (325)
T cd00983 127 SLVRSGAVDLIVVDSVAAL 145 (325)
T ss_pred HHHhccCCCEEEEcchHhh
Confidence 55544 5669999998543
No 238
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.65 E-value=0.03 Score=58.32 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=25.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
...+.++|+|++|+|||.+|+.+++.....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 345789999999999999999999987543
No 239
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.032 Score=63.54 Aligned_cols=182 Identities=15% Similarity=0.114 Sum_probs=102.5
Q ss_pred ccccCCchH---HHHHHHHHHccC---------CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHH
Q 037947 150 YEQFESRMP---TFQDIMEALKDD---------NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYK 217 (780)
Q Consensus 150 ~~~~~gr~~---~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 217 (780)
+.++.|-++ ++.++++.|.++ -++=|-++|++|+|||-||+.++-...+- |+++|.+
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS---- 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS---- 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH----
Confidence 456667665 455566666632 24668899999999999999998876543 4555543
Q ss_pred HHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCcccccc---ccCCcc----ccccccc--C---CC
Q 037947 218 AIQNEIAGALGLFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNRLDLDA---VGIPYK----NYQNEIK--D---DR 284 (780)
Q Consensus 218 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~---l~~~~~----~~~~~l~--~---~~ 284 (780)
++ .+-+... ...+.+.|...- ...++++.+|+++...--.. ....-. .+.+.|. + ..
T Consensus 379 EF----vE~~~g~------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 EF----VEMFVGV------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred HH----HHHhccc------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 11 1111100 012222233322 24778999998855421110 000000 0001111 1 11
Q ss_pred CCcEEEEEecchhHHhhh----cCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHH
Q 037947 285 RRCAMLLTSRRKDLLYNE----MNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVA 353 (780)
Q Consensus 285 ~~s~iivTtr~~~v~~~~----~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 353 (780)
.+--++.+|+..++.+.. -.-+..+.++.-+.....++|.-++.......+..++++ |+...-|.+=|
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHH
Confidence 233344466666664221 123457888888889999999998875554455566776 88888888754
No 240
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.61 E-value=0.075 Score=63.66 Aligned_cols=105 Identities=21% Similarity=0.292 Sum_probs=59.0
Q ss_pred cccCCchHHHHHHHHHHcc-------CC--ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHH
Q 037947 151 EQFESRMPTFQDIMEALKD-------DN--INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQN 221 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~~-------~~--~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 221 (780)
..++|.+..++.+...+.. ++ ..++.++|+.|+|||++|+.+++..... -...+.++.+.-.. ..
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~-~~--- 641 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFME-KH--- 641 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhh-hh---
Confidence 3467888888888877751 11 2478899999999999999999876322 12234444443211 11
Q ss_pred HHHHHcCCCcCCCCCHHHHHHHHHHHhccCc-EEEEEeCCCCc
Q 037947 222 EIAGALGLFLGEHEDVSERAHLLRQRLKASR-VLVILDDVWNR 263 (780)
Q Consensus 222 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr-~LlVlDdv~~~ 263 (780)
.+..-++....... .+ ....+.+.++.++ -+|+|||+...
T Consensus 642 ~~~~LiG~~pgy~g-~~-~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 642 SVSRLVGAPPGYVG-YE-EGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred hHHHHhCCCCcccc-cc-hhHHHHHHHHhCCCCeEEEeehhhC
Confidence 11122332211111 01 1123444444433 59999999755
No 241
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.61 E-value=0.012 Score=60.63 Aligned_cols=88 Identities=25% Similarity=0.308 Sum_probs=49.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC-CCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK-PDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLK 249 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 249 (780)
+.+++.++|++|+||||++..++.....+..-..+..|+.... ....+-+....+.++.......+..+....+. .+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~-~~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALD-RLR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHH-Hcc
Confidence 3569999999999999999999887754311124555554432 12233334444445544433333444433333 333
Q ss_pred cCcEEEEEeCC
Q 037947 250 ASRVLVILDDV 260 (780)
Q Consensus 250 ~kr~LlVlDdv 260 (780)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 347777753
No 242
>PRK06526 transposase; Provisional
Probab=96.61 E-value=0.0025 Score=64.44 Aligned_cols=74 Identities=22% Similarity=0.191 Sum_probs=43.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccC
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKAS 251 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 251 (780)
..-+.++|++|+|||+||..+......++ + .+.|+ +..+++..+..... . . .....+.. + .+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g-~-~v~f~------t~~~l~~~l~~~~~----~-~---~~~~~l~~-l-~~ 159 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAG-H-RVLFA------TAAQWVARLAAAHH----A-G---RLQAELVK-L-GR 159 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCC-C-chhhh------hHHHHHHHHHHHHh----c-C---cHHHHHHH-h-cc
Confidence 45689999999999999999988765442 2 23342 34455555543211 0 0 11112222 2 23
Q ss_pred cEEEEEeCCCCc
Q 037947 252 RVLVILDDVWNR 263 (780)
Q Consensus 252 r~LlVlDdv~~~ 263 (780)
.-+||+||+...
T Consensus 160 ~dlLIIDD~g~~ 171 (254)
T PRK06526 160 YPLLIVDEVGYI 171 (254)
T ss_pred CCEEEEcccccC
Confidence 458999999654
No 243
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.56 E-value=0.011 Score=61.81 Aligned_cols=90 Identities=16% Similarity=0.167 Sum_probs=57.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhcc----CCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCC---------CCCH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMED----KLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGE---------HEDV 237 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~~ 237 (780)
...++-|+|++|+|||+|+..++-..... ..=..++|++....++.+++.+ +++.++..... ..+.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCCH
Confidence 35789999999999999999887543321 1124689999999998888754 56666543221 0122
Q ss_pred HHH---HHHHHHHhcc-CcEEEEEeCCC
Q 037947 238 SER---AHLLRQRLKA-SRVLVILDDVW 261 (780)
Q Consensus 238 ~~~---~~~l~~~L~~-kr~LlVlDdv~ 261 (780)
++. ...+...+.. +--|||+|.+-
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 222 2333334433 44589999874
No 244
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.56 E-value=0.021 Score=60.26 Aligned_cols=90 Identities=17% Similarity=0.203 Sum_probs=51.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC-CCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK-PDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLK 249 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 249 (780)
+.++|+++|++|+||||++..++.....++ ..+..++.... ....+-++...+.++.......+.....+.+...-.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~G--kkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcC--CcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 457999999999999999999998775432 23445554322 122333344444555444333334555444433322
Q ss_pred c-CcEEEEEeCCCC
Q 037947 250 A-SRVLVILDDVWN 262 (780)
Q Consensus 250 ~-kr~LlVlDdv~~ 262 (780)
. +.=++++|-...
T Consensus 318 ~~~~DvVLIDTaGR 331 (436)
T PRK11889 318 EARVDYILIDTAGK 331 (436)
T ss_pred ccCCCEEEEeCccc
Confidence 2 234778887644
No 245
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.53 E-value=0.012 Score=61.16 Aligned_cols=86 Identities=17% Similarity=0.220 Sum_probs=57.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCc-----CCCCCHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFL-----GEHEDVSERAHLLR 245 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 245 (780)
..+++-|+|++|+||||||.++....... -..++|++..+.++.. .+++++... ....+.++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45799999999999999999988776543 3567899887766653 345555432 11223455555555
Q ss_pred HHhcc-CcEEEEEeCCCCc
Q 037947 246 QRLKA-SRVLVILDDVWNR 263 (780)
Q Consensus 246 ~~L~~-kr~LlVlDdv~~~ 263 (780)
..++. ..-+||+|.|-..
T Consensus 127 ~li~~~~~~lIVIDSv~al 145 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAAL 145 (321)
T ss_pred HHhhccCCcEEEEcchhhh
Confidence 55543 5669999998543
No 246
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.53 E-value=7e-05 Score=77.19 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=48.0
Q ss_pred CCCCccEEEeccCccc-cccCchhhcCCCCccEEEecCCC-CCC--CCccccCCCCCCEEEccCcc-CCC--cc-ccccc
Q 037947 531 ECPKLKLFFLFSKKLS-LVIPDLFFEGVPSLQVLSLNGFH-FPS--LPSTLGCLINLQTLSFECCV-LGD--VA-TVGAL 602 (780)
Q Consensus 531 ~~~~L~~L~l~~~~~~-~~~~~~~~~~l~~Lr~L~l~~~~-~~~--lp~~i~~l~~L~~L~L~~~~-~~~--~~-~i~~l 602 (780)
.|+++..|.+.++... ...-.++-..++.|+.|++..|. ++. +-.....+++|.||++++|. +++ +. -...+
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 6788888877776522 11222334567888888888854 442 22234467888888888885 322 21 12234
Q ss_pred CCCcEEEeecC
Q 037947 603 KKLVILSFRNS 613 (780)
Q Consensus 603 ~~L~~L~l~~~ 613 (780)
..++.+.++||
T Consensus 242 ~~l~~~~~kGC 252 (483)
T KOG4341|consen 242 KELEKLSLKGC 252 (483)
T ss_pred hhhhhhhhccc
Confidence 44555555554
No 247
>PRK06696 uridine kinase; Validated
Probab=96.52 E-value=0.0038 Score=62.19 Aligned_cols=44 Identities=25% Similarity=0.337 Sum_probs=36.4
Q ss_pred CchHHHHHHHHHHc---cCCccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 155 SRMPTFQDIMEALK---DDNINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 155 gr~~~~~~l~~~L~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
.|++.+++|.+.+. .++..+|+|.|.+|+||||||+.+......
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46677778877775 456789999999999999999999988754
No 248
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.52 E-value=0.011 Score=58.88 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=33.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD 215 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (780)
...++.|.|.+|+||||+|.+++.....+ -..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 35789999999999999999998876533 34677887655543
No 249
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.52 E-value=0.016 Score=57.98 Aligned_cols=89 Identities=15% Similarity=0.251 Sum_probs=52.5
Q ss_pred HHHHHHHHHcc--CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCC
Q 037947 159 TFQDIMEALKD--DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHED 236 (780)
Q Consensus 159 ~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 236 (780)
.+..+.++..+ .+...+.++|.+|+|||+||..+++....+ -..+++++ ..++...+-..... ...
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~--g~~v~~it------~~~l~~~l~~~~~~---~~~- 151 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR--GKSVLIIT------VADIMSAMKDTFSN---SET- 151 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEE------HHHHHHHHHHHHhh---ccc-
Confidence 34444444432 223578999999999999999999987654 23455654 44555555443321 111
Q ss_pred HHHHHHHHHHHhccCcEEEEEeCCCCc
Q 037947 237 VSERAHLLRQRLKASRVLVILDDVWNR 263 (780)
Q Consensus 237 ~~~~~~~l~~~L~~kr~LlVlDdv~~~ 263 (780)
....+.+.+. +.=+|||||+...
T Consensus 152 ---~~~~~l~~l~-~~dlLvIDDig~~ 174 (244)
T PRK07952 152 ---SEEQLLNDLS-NVDLLVIDEIGVQ 174 (244)
T ss_pred ---cHHHHHHHhc-cCCEEEEeCCCCC
Confidence 1123334455 3448888999554
No 250
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.042 Score=53.11 Aligned_cols=185 Identities=15% Similarity=0.245 Sum_probs=96.4
Q ss_pred cCC-chHHHHHHHHHHc-------------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHH
Q 037947 153 FES-RMPTFQDIMEALK-------------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKA 218 (780)
Q Consensus 153 ~~g-r~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 218 (780)
++| -++.+++|.+.+. -.+.+-|.++|++|.|||-||+.|+++. .+-|+.||.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs----e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS----E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH----H
Confidence 444 4666666665543 1356778999999999999999999754 3456777764 2
Q ss_pred HHHHHHHHcCCCcCCCCCHHHHHHHHHHHh----ccCcEEEEEeCCCCcccc--cc-------ccCCcccccccc--cCC
Q 037947 219 IQNEIAGALGLFLGEHEDVSERAHLLRQRL----KASRVLVILDDVWNRLDL--DA-------VGIPYKNYQNEI--KDD 283 (780)
Q Consensus 219 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L----~~kr~LlVlDdv~~~~~~--~~-------l~~~~~~~~~~l--~~~ 283 (780)
+.+..+ .+..+.+++.+ ..-+-+|+.|.+++.-.- +. +....-.+++.| ...
T Consensus 217 lvqk~i-------------gegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 217 LVQKYI-------------GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred HHHHHh-------------hhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 222221 11223333332 236778888888665110 00 000000011111 123
Q ss_pred CCCcEEEEEecchhHHhh-hc---CCcceEEcCCCChHHHHHHHHHhhCCC--CCCCChhHHHHHHHHHhCCChHHHHHH
Q 037947 284 RRRCAMLLTSRRKDLLYN-EM---NSQKNFLINVLSDQEAVQLFEKMSGVF--EGPLDFQNLAIKIARECGGLPVAITTV 357 (780)
Q Consensus 284 ~~~s~iivTtr~~~v~~~-~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~GlPLai~~~ 357 (780)
.+.-+||..|..-++... .. .-...++.+|-+++.-.++++-+...- ..--++..+++++....|.--.++-.=
T Consensus 284 tknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcte 363 (404)
T KOG0728|consen 284 TKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTE 363 (404)
T ss_pred ccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhh
Confidence 456788888877666421 11 223457777777766667766554321 222344455554443333233344444
Q ss_pred HHHH
Q 037947 358 ATAL 361 (780)
Q Consensus 358 ~~~L 361 (780)
|++.
T Consensus 364 agm~ 367 (404)
T KOG0728|consen 364 AGMY 367 (404)
T ss_pred hhHH
Confidence 4543
No 251
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.49 E-value=0.011 Score=59.86 Aligned_cols=89 Identities=28% Similarity=0.261 Sum_probs=56.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhcc----CCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCC---------CCCHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMED----KLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGE---------HEDVS 238 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~~~ 238 (780)
..++=|+|++|+|||.|+..++-..... ..=..++|++....++..++. +|++..+.+... ..+.+
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 4689999999999999999887664322 112459999999999988875 466665432110 01222
Q ss_pred HH---HHHHHHHhcc-CcEEEEEeCCC
Q 037947 239 ER---AHLLRQRLKA-SRVLVILDDVW 261 (780)
Q Consensus 239 ~~---~~~l~~~L~~-kr~LlVlDdv~ 261 (780)
+. ...+...+.+ +--|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 32 3333344433 44599999873
No 252
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.45 E-value=0.0092 Score=61.09 Aligned_cols=53 Identities=26% Similarity=0.419 Sum_probs=39.9
Q ss_pred ccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHH-HhccCCCCe
Q 037947 152 QFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARR-VMEDKLFDE 204 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~-~~~~~~F~~ 204 (780)
++-+|..+..--+++|.++.+..|.+.|.+|.|||.||-...=. ..+++.|..
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~K 278 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRK 278 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhce
Confidence 34467778888889999999999999999999999888765432 223334544
No 253
>PRK09354 recA recombinase A; Provisional
Probab=96.43 E-value=0.015 Score=60.85 Aligned_cols=86 Identities=17% Similarity=0.218 Sum_probs=59.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCc-----CCCCCHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFL-----GEHEDVSERAHLLR 245 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~-----~~~~~~~~~~~~l~ 245 (780)
..+++-|+|++|+||||||.++....... -..++|++....++.. .+++++... ....+.++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45789999999999999999998776544 4668899988877753 345555432 11223455555555
Q ss_pred HHhcc-CcEEEEEeCCCCc
Q 037947 246 QRLKA-SRVLVILDDVWNR 263 (780)
Q Consensus 246 ~~L~~-kr~LlVlDdv~~~ 263 (780)
..++. ..-+||+|.|-..
T Consensus 132 ~li~s~~~~lIVIDSvaaL 150 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAAL 150 (349)
T ss_pred HHhhcCCCCEEEEeChhhh
Confidence 55544 5669999998543
No 254
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.43 E-value=0.00094 Score=65.22 Aligned_cols=79 Identities=24% Similarity=0.360 Sum_probs=39.2
Q ss_pred CCCccEEEecCCCCCCCCccccCCCCCCEEEccCcc--CCC--cccccccCCCcEEEeecCCCCccC--hhhcCCCCCCE
Q 037947 557 VPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCV--LGD--VATVGALKKLVILSFRNSHIEQLP--EEIGQLTRLKL 630 (780)
Q Consensus 557 l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~--~~~--~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~ 630 (780)
+..|..|++.++.++++ ..+..|++|++|.++.|. +.. +...-++++|++|++++|+++.+- ..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 34444444554444432 123345666666666663 222 223334466666666666554311 12345555666
Q ss_pred EecCCC
Q 037947 631 LDLSNC 636 (780)
Q Consensus 631 L~l~~~ 636 (780)
|++.+|
T Consensus 121 Ldl~n~ 126 (260)
T KOG2739|consen 121 LDLFNC 126 (260)
T ss_pred hhcccC
Confidence 666654
No 255
>PRK04296 thymidine kinase; Provisional
Probab=96.42 E-value=0.0048 Score=59.66 Aligned_cols=110 Identities=16% Similarity=0.098 Sum_probs=62.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCC--CCCHHHHHHHHHHHhcc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGE--HEDVSERAHLLRQRLKA 250 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~L~~ 250 (780)
.++.|+|+.|.||||+|..+..+.... -..++.+. ..++.......++..++..... .....+....+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 478899999999999999999887654 22333332 1112222233455566543322 1223444445544 233
Q ss_pred CcEEEEEeCCCCc--cccccccCCcccccccccC-CCCCcEEEEEecchh
Q 037947 251 SRVLVILDDVWNR--LDLDAVGIPYKNYQNEIKD-DRRRCAMLLTSRRKD 297 (780)
Q Consensus 251 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~l~~-~~~~s~iivTtr~~~ 297 (780)
+.-+||+|.+.-. ++...+. .. ...|..||+|.+...
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~----------~~l~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLA----------EVLDDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHH----------HHHHHcCCeEEEEecCcc
Confidence 4459999998443 1111111 11 345778999988754
No 256
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.40 E-value=0.00049 Score=60.08 Aligned_cols=86 Identities=22% Similarity=0.275 Sum_probs=50.7
Q ss_pred CCCCccEEEecCCCCCCCCccccCC-CCCCEEEccCccCCC-cccccccCCCcEEEeecCCCCccChhhcCCCCCCEEec
Q 037947 556 GVPSLQVLSLNGFHFPSLPSTLGCL-INLQTLSFECCVLGD-VATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDL 633 (780)
Q Consensus 556 ~l~~Lr~L~l~~~~~~~lp~~i~~l-~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l 633 (780)
+...|...+|++|.+.++|+.+... +.+..|++.+|.+.+ |..+..++.|+.|+++.|.+...|.-+..|.+|-.|+.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 4455666667777776666555433 356666666666655 45566666666666666666666665555666666665
Q ss_pred CCCCCCccc
Q 037947 634 SNCSKLKSI 642 (780)
Q Consensus 634 ~~~~~l~~~ 642 (780)
.+ +....+
T Consensus 131 ~~-na~~ei 138 (177)
T KOG4579|consen 131 PE-NARAEI 138 (177)
T ss_pred CC-CccccC
Confidence 55 333334
No 257
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0099 Score=63.62 Aligned_cols=50 Identities=28% Similarity=0.351 Sum_probs=38.7
Q ss_pred ccccCCch---HHHHHHHHHHccC--------C-ccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 150 YEQFESRM---PTFQDIMEALKDD--------N-INVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 150 ~~~~~gr~---~~~~~l~~~L~~~--------~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
++++.|-| .|+++|+++|.++ + .+-|.++|++|.|||-||+.|+-...+-
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP 364 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP 364 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC
Confidence 45556655 5788889998753 1 4678999999999999999998776554
No 258
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.039 Score=61.07 Aligned_cols=139 Identities=11% Similarity=0.171 Sum_probs=70.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHH-Hh
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQ-RL 248 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~L 248 (780)
...+-|..+|++|+|||++|+.+++..... | ++++.. +++.... .+ -+..+..+.+ .=
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~n--F-----lsvkgp----EL~sk~v--------Ge--SEr~ir~iF~kAR 524 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMN--F-----LSVKGP----ELFSKYV--------GE--SERAIREVFRKAR 524 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCC--e-----eeccCH----HHHHHhc--------Cc--hHHHHHHHHHHHh
Confidence 456789999999999999999999976543 3 333321 1111110 11 1112222222 22
Q ss_pred ccCcEEEEEeCCCCcccccc--ccC----CcccccccccC--CCCCcEEEEEecchhHH-hhhcC---CcceEEcCCCCh
Q 037947 249 KASRVLVILDDVWNRLDLDA--VGI----PYKNYQNEIKD--DRRRCAMLLTSRRKDLL-YNEMN---SQKNFLINVLSD 316 (780)
Q Consensus 249 ~~kr~LlVlDdv~~~~~~~~--l~~----~~~~~~~~l~~--~~~~s~iivTtr~~~v~-~~~~~---~~~~~~l~~L~~ 316 (780)
+-.+.+|+||.++....-.. -.. .+.-++..+-. ..++.-||-.|..++.. ...+. -+..+.+++-+.
T Consensus 525 ~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~ 604 (693)
T KOG0730|consen 525 QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDL 604 (693)
T ss_pred hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccH
Confidence 33678999998865421110 000 00000011111 11222344444444332 22233 345677777777
Q ss_pred HHHHHHHHHhhCC
Q 037947 317 QEAVQLFEKMSGV 329 (780)
Q Consensus 317 ~~~~~Lf~~~~~~ 329 (780)
+.-.++|+.++..
T Consensus 605 ~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 605 EARLEILKQCAKK 617 (693)
T ss_pred HHHHHHHHHHHhc
Confidence 7778899988863
No 259
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.34 E-value=0.21 Score=54.16 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=36.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc-CCCHHHHHHHHHHHcCC
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-KPDYKAIQNEIAGALGL 229 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~ 229 (780)
...+|.++|+.|+||||+|..++...+.++ + .++.|+... .+...+-++...+..+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G-~-kV~lV~~D~~R~aA~eQLk~~a~~~~v 156 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKG-F-KPCLVCADTFRAGAFDQLKQNATKARI 156 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC-C-CEEEEcCcccchhHHHHHHHHhhccCC
Confidence 357999999999999999999998776442 2 344454432 22333333444554443
No 260
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.33 E-value=0.031 Score=56.23 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=36.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEI 223 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 223 (780)
...++.|.|.+|+|||++|.++......+ -..++|++... +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHH
Confidence 45799999999999999999987664332 45688888765 455555553
No 261
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.30 E-value=0.046 Score=63.39 Aligned_cols=155 Identities=18% Similarity=0.218 Sum_probs=77.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASR 252 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr 252 (780)
+-|.++|++|+|||++|+.+....... | +.++.+. +.. +. .+ .........+...-...+
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~--f---~~is~~~------~~~-~~--~g------~~~~~~~~~f~~a~~~~P 245 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSD------FVE-MF--VG------VGASRVRDMFEQAKKAAP 245 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC--E---EEEehHH------hHH-hh--hc------ccHHHHHHHHHHHHhcCC
Confidence 458999999999999999998866432 2 2222221 111 10 00 001122222333334478
Q ss_pred EEEEEeCCCCcccccc--ccC-------Cccccccccc--CCCCCcEEEEEecchhHHhhhc----CCcceEEcCCCChH
Q 037947 253 VLVILDDVWNRLDLDA--VGI-------PYKNYQNEIK--DDRRRCAMLLTSRRKDLLYNEM----NSQKNFLINVLSDQ 317 (780)
Q Consensus 253 ~LlVlDdv~~~~~~~~--l~~-------~~~~~~~~l~--~~~~~s~iivTtr~~~v~~~~~----~~~~~~~l~~L~~~ 317 (780)
.+|++|+++....-.. ... .+..++..+. ....+.-+|.||...+...... .-...+.++..+.+
T Consensus 246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~ 325 (644)
T PRK10733 246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 325 (644)
T ss_pred cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHH
Confidence 8999999866421000 000 0000000001 1223445666777665431111 22457788888888
Q ss_pred HHHHHHHHhhCCCCCCCChhHHHHHHHHHhCC
Q 037947 318 EAVQLFEKMSGVFEGPLDFQNLAIKIARECGG 349 (780)
Q Consensus 318 ~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G 349 (780)
+-.+++..+.......+.. ....+++.+.|
T Consensus 326 ~R~~Il~~~~~~~~l~~~~--d~~~la~~t~G 355 (644)
T PRK10733 326 GREQILKVHMRRVPLAPDI--DAAIIARGTPG 355 (644)
T ss_pred HHHHHHHHHhhcCCCCCcC--CHHHHHhhCCC
Confidence 8888888777532222211 12345666665
No 262
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.30 E-value=0.015 Score=54.10 Aligned_cols=121 Identities=15% Similarity=0.195 Sum_probs=69.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEE---cc------------------C---------------
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVV---SQ------------------K--------------- 213 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~------------------~--------------- 213 (780)
+....+.|+|++|.|||||.+.+|...+.. .+.+|+.- +. +
T Consensus 26 ~~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~ 102 (223)
T COG2884 26 PKGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL 102 (223)
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhh
Confidence 345689999999999999999999887543 23444421 11 0
Q ss_pred ------CCHHHH---HHHHHHHcCCCcCC-----C-CCHHHHHHHHHHHhccCcEEEEEeC----CCCccccccccCCcc
Q 037947 214 ------PDYKAI---QNEIAGALGLFLGE-----H-EDVSERAHLLRQRLKASRVLVILDD----VWNRLDLDAVGIPYK 274 (780)
Q Consensus 214 ------~~~~~~---~~~i~~~l~~~~~~-----~-~~~~~~~~~l~~~L~~kr~LlVlDd----v~~~~~~~~l~~~~~ 274 (780)
....++ ..+.++..+..... . +--++..-.|.+.+-+++-+++=|. ++....|+-+...-
T Consensus 103 pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfe- 181 (223)
T COG2884 103 PLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFE- 181 (223)
T ss_pred hhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHH-
Confidence 011222 22223333322111 1 1123333457777778889999886 33334454332111
Q ss_pred cccccccCCCCCcEEEEEecchhHHh
Q 037947 275 NYQNEIKDDRRRCAMLLTSRRKDLLY 300 (780)
Q Consensus 275 ~~~~~l~~~~~~s~iivTtr~~~v~~ 300 (780)
.-+..|+.|+++|.+.....
T Consensus 182 ------einr~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 182 ------EINRLGTTVLMATHDLELVN 201 (223)
T ss_pred ------HHhhcCcEEEEEeccHHHHH
Confidence 23567999999999988753
No 263
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.30 E-value=0.0091 Score=71.57 Aligned_cols=105 Identities=23% Similarity=0.318 Sum_probs=60.8
Q ss_pred cccCCchHHHHHHHHHHcc------C---CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHH
Q 037947 151 EQFESRMPTFQDIMEALKD------D---NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQN 221 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~~------~---~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 221 (780)
..++|.+..++.+.+.+.. + ...++.++|+.|+|||++|+.+....... -...+.++.+.-.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~--- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS--- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch---
Confidence 4578999999999888762 1 13568899999999999999999876332 12334445443222111
Q ss_pred HHHHHcCCCcCCCCCHHHHHHHHHHHhccCcE-EEEEeCCCCc
Q 037947 222 EIAGALGLFLGEHEDVSERAHLLRQRLKASRV-LVILDDVWNR 263 (780)
Q Consensus 222 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~ 263 (780)
+...++....... .+ ....+.+.++.+++ +|+||++...
T Consensus 640 -~~~l~g~~~g~~g-~~-~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 640 -VARLIGAPPGYVG-YE-EGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred -HHHhcCCCCCccC-cc-cccHHHHHHHcCCCcEEEEeccccC
Confidence 1111222211100 00 01234444444444 9999999765
No 264
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.30 E-value=0.19 Score=51.30 Aligned_cols=170 Identities=20% Similarity=0.199 Sum_probs=96.2
Q ss_pred ccccCCchHHHHHHHHHHc----cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH-HHHHHHHH
Q 037947 150 YEQFESRMPTFQDIMEALK----DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY-KAIQNEIA 224 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~~~~i~ 224 (780)
...++|-.++..++-.++. .+...-|.|+|+.|.|||+|...+..+. +..=+..+-|...+..-. +-.++.|.
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~--q~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDI--QENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhH--HhcCCeEEEEEECccchhhHHHHHHHH
Confidence 3457788888888777775 3445668899999999999999888872 211233455555554322 22444555
Q ss_pred HHcC----CCcCCCCCHHHHHHHHHHHhcc------CcEEEEEeCCCCcccc-------ccccCCcccccccccCCCCCc
Q 037947 225 GALG----LFLGEHEDVSERAHLLRQRLKA------SRVLVILDDVWNRLDL-------DAVGIPYKNYQNEIKDDRRRC 287 (780)
Q Consensus 225 ~~l~----~~~~~~~~~~~~~~~l~~~L~~------kr~LlVlDdv~~~~~~-------~~l~~~~~~~~~~l~~~~~~s 287 (780)
+|+. .......+..+...++...|+. -+.+.|+|.++--..- .-+...- ....+=|
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisq-------s~r~Pic 173 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQ-------SARAPIC 173 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHh-------hcCCCeE
Confidence 4443 2222222344556677777753 3467777766433211 0010000 1133445
Q ss_pred EEEEEecchhHH---h--hhcCCc-ceEEcCCCChHHHHHHHHHhhC
Q 037947 288 AMLLTSRRKDLL---Y--NEMNSQ-KNFLINVLSDQEAVQLFEKMSG 328 (780)
Q Consensus 288 ~iivTtr~~~v~---~--~~~~~~-~~~~l~~L~~~~~~~Lf~~~~~ 328 (780)
-|-+|||-.... . .+.-.. .++-+++++.++-.+++++...
T Consensus 174 iig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 174 IIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred EEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 677888875432 1 111122 3566677888888888887764
No 265
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.021 Score=60.56 Aligned_cols=91 Identities=20% Similarity=0.218 Sum_probs=55.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc-CCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-KPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLK 249 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 249 (780)
+..++.++|+.|+||||++.++......+.....+..++... .....+-++...+.++.......+..+....+ ..+.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l-~~l~ 214 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLAL-AELR 214 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHH-HHhc
Confidence 347899999999999999999998765431123455555433 23455666666677766543332223333323 3344
Q ss_pred cCcEEEEEeCCCCc
Q 037947 250 ASRVLVILDDVWNR 263 (780)
Q Consensus 250 ~kr~LlVlDdv~~~ 263 (780)
++ -++++|.....
T Consensus 215 ~~-DlVLIDTaG~~ 227 (374)
T PRK14722 215 NK-HMVLIDTIGMS 227 (374)
T ss_pred CC-CEEEEcCCCCC
Confidence 44 45669987433
No 266
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.27 E-value=0.032 Score=55.81 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=26.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
++..+|+|.|++|.|||||++.+.......
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 557899999999999999999999887654
No 267
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.27 E-value=0.027 Score=59.31 Aligned_cols=90 Identities=17% Similarity=0.091 Sum_probs=57.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhc----cCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCC---------CCCH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVME----DKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGE---------HEDV 237 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~---------~~~~ 237 (780)
...++-|+|.+|+|||+|+..++-.... ...-..++|++....|+.+++.+ +++.++.+... ..+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCCH
Confidence 3578889999999999999998754432 11124689999999999888755 56666554211 1123
Q ss_pred HHHH---HHHHHHhcc-CcEEEEEeCCC
Q 037947 238 SERA---HLLRQRLKA-SRVLVILDDVW 261 (780)
Q Consensus 238 ~~~~---~~l~~~L~~-kr~LlVlDdv~ 261 (780)
++.. ..+...+.. +--|||+|.+-
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 3322 233333433 44588999874
No 268
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.079 Score=60.95 Aligned_cols=104 Identities=19% Similarity=0.329 Sum_probs=65.4
Q ss_pred ccCCchHHHHHHHHHHc-------c--CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHH
Q 037947 152 QFESRMPTFQDIMEALK-------D--DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNE 222 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~-------~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 222 (780)
.++|.++.+..+.+.+. + ....+....||.|||||-||+.++....... +..+-++.|.-.. -..
T Consensus 492 rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~E----kHs 565 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYME----KHS 565 (786)
T ss_pred ceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHH----HHH
Confidence 36788888888888876 1 2345677899999999999999998873211 3334443333211 122
Q ss_pred HHHHcCCCcCCCCCHHHHHHHHHHHhccCcE-EEEEeCCCCc
Q 037947 223 IAGALGLFLGEHEDVSERAHLLRQRLKASRV-LVILDDVWNR 263 (780)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~ 263 (780)
+.+-+|.+..--- -++ ...|-+.++.++| +|.||+|...
T Consensus 566 VSrLIGaPPGYVG-yee-GG~LTEaVRr~PySViLlDEIEKA 605 (786)
T COG0542 566 VSRLIGAPPGYVG-YEE-GGQLTEAVRRKPYSVILLDEIEKA 605 (786)
T ss_pred HHHHhCCCCCCce-ecc-ccchhHhhhcCCCeEEEechhhhc
Confidence 3334444432211 111 3467778888988 8889999766
No 269
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.03 Score=63.17 Aligned_cols=139 Identities=17% Similarity=0.215 Sum_probs=75.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA 250 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 250 (780)
..+.+-++|++|.|||.||+.+++..... | +.+... +++... ++ ++.....+.....-+.
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~--f-----i~v~~~----~l~sk~---vG------esek~ir~~F~~A~~~ 334 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR--F-----ISVKGS----ELLSKW---VG------ESEKNIRELFEKARKL 334 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe--E-----EEeeCH----HHhccc---cc------hHHHHHHHHHHHHHcC
Confidence 45689999999999999999999954332 3 222221 111110 11 1022222333333356
Q ss_pred CcEEEEEeCCCCccccccccC------Cccccccccc--CCCCCcEEEEEecchhHHhhh-c---CCcceEEcCCCChHH
Q 037947 251 SRVLVILDDVWNRLDLDAVGI------PYKNYQNEIK--DDRRRCAMLLTSRRKDLLYNE-M---NSQKNFLINVLSDQE 318 (780)
Q Consensus 251 kr~LlVlDdv~~~~~~~~l~~------~~~~~~~~l~--~~~~~s~iivTtr~~~v~~~~-~---~~~~~~~l~~L~~~~ 318 (780)
.+.+|++|+++....+..-.. ....++..+. ....+..||-||......... . .-...+.+++-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 889999999976643332110 0111111111 122333455555555432111 1 224578888889999
Q ss_pred HHHHHHHhhCC
Q 037947 319 AVQLFEKMSGV 329 (780)
Q Consensus 319 ~~~Lf~~~~~~ 329 (780)
..+.|..+...
T Consensus 415 r~~i~~~~~~~ 425 (494)
T COG0464 415 RLEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHhcc
Confidence 99999998863
No 270
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.25 E-value=0.022 Score=54.16 Aligned_cols=87 Identities=23% Similarity=0.264 Sum_probs=46.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC-CCHHHHHHHHHHHcCCCcC---CCCCHHHHH-HHHHHHh
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK-PDYKAIQNEIAGALGLFLG---EHEDVSERA-HLLRQRL 248 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~-~~l~~~L 248 (780)
++.++|++|+||||++..++......+ ..++.++.... ....+.+.......+.... ...+..+.. +.+....
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g--~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG--KKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAR 79 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999998876542 23444443321 1233334444444442211 112333333 2333333
Q ss_pred ccCcEEEEEeCCCC
Q 037947 249 KASRVLVILDDVWN 262 (780)
Q Consensus 249 ~~kr~LlVlDdv~~ 262 (780)
.+..-++|+|....
T Consensus 80 ~~~~d~viiDt~g~ 93 (173)
T cd03115 80 EENFDVVIVDTAGR 93 (173)
T ss_pred hCCCCEEEEECccc
Confidence 33333566776543
No 271
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.25 E-value=0.07 Score=56.10 Aligned_cols=87 Identities=11% Similarity=0.098 Sum_probs=48.8
Q ss_pred CcEEEEEeCCCCccc--cccccCCcccccccccCCCCCcEEEEEecchh-HHhhhcCCcceEEcCCCChHHHHHHHHHhh
Q 037947 251 SRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKD-LLYNEMNSQKNFLINVLSDQEAVQLFEKMS 327 (780)
Q Consensus 251 kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 327 (780)
++-++|+|++...+. -+.+...+ .....++.+|++|.+.. +..........+++.+++.+++.+.+....
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~L-------Eep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~ 185 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVL-------EEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG 185 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHH-------HhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC
Confidence 444566687765532 12222222 22223566777776654 433334456789999999999988886542
Q ss_pred CCCCCCCChhHHHHHHHHHhCCChHH
Q 037947 328 GVFEGPLDFQNLAIKIARECGGLPVA 353 (780)
Q Consensus 328 ~~~~~~~~~~~~~~~i~~~c~GlPLa 353 (780)
. +.. ...+..++|.|+.
T Consensus 186 ---~--~~~----~~~l~~~~g~p~~ 202 (325)
T PRK08699 186 ---V--AEP----EERLAFHSGAPLF 202 (325)
T ss_pred ---C--CcH----HHHHHHhCCChhh
Confidence 1 111 1123568899964
No 272
>PRK10867 signal recognition particle protein; Provisional
Probab=96.24 E-value=0.025 Score=61.52 Aligned_cols=90 Identities=22% Similarity=0.292 Sum_probs=50.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc-CCCHHHHHHHHHHHcCCCcC---CCCCHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-KPDYKAIQNEIAGALGLFLG---EHEDVSERAHLLRQ 246 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 246 (780)
...+|.++|++|+||||.|..++.....+. -..++.|+... .+...+-++...+..+.... ...++........+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~-G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKK-KKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhc-CCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 457999999999999999999988765441 12234444332 11223334445555554322 11234444444444
Q ss_pred HhccCcE-EEEEeCCC
Q 037947 247 RLKASRV-LVILDDVW 261 (780)
Q Consensus 247 ~L~~kr~-LlVlDdv~ 261 (780)
..+.+.| ++|+|-..
T Consensus 178 ~a~~~~~DvVIIDTaG 193 (433)
T PRK10867 178 EAKENGYDVVIVDTAG 193 (433)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 4444444 66777653
No 273
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.23 E-value=0.012 Score=70.42 Aligned_cols=105 Identities=18% Similarity=0.246 Sum_probs=60.1
Q ss_pred cccCCchHHHHHHHHHHcc-------CC--ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHH
Q 037947 151 EQFESRMPTFQDIMEALKD-------DN--INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQN 221 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~~-------~~--~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 221 (780)
..++|.+..++.+...+.. ++ ...+.++|+.|+|||+||+.+++..... -...+-++.+.-.+...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~--- 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHT--- 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhcccccc---
Confidence 4577888888888887751 11 2356789999999999999999876322 12233444443222111
Q ss_pred HHHHHcCCCcCCCCCHHHHHHHHHHHhccCcE-EEEEeCCCCc
Q 037947 222 EIAGALGLFLGEHEDVSERAHLLRQRLKASRV-LVILDDVWNR 263 (780)
Q Consensus 222 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~-LlVlDdv~~~ 263 (780)
+..-++....... . +....+.+.++.++| +++||+++..
T Consensus 584 -~~~l~g~~~gyvg-~-~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 584 -VSKLIGSPPGYVG-Y-NEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred -HHHhcCCCCcccC-c-CccchHHHHHHhCCCeEEEECChhhC
Confidence 1111222111000 0 011245566666665 8899999765
No 274
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.18 E-value=0.015 Score=52.68 Aligned_cols=45 Identities=33% Similarity=0.443 Sum_probs=35.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCc
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFL 231 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~ 231 (780)
+|.|.|++|+||||+|+.++++..-. | .+.-.++++|++..+.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----------vsaG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----------VSAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----------eeccHHHHHHHHHcCCCH
Confidence 68999999999999999999987543 1 133467888888887654
No 275
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.17 E-value=0.032 Score=52.26 Aligned_cols=40 Identities=33% Similarity=0.436 Sum_probs=31.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD 215 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (780)
++.|+|++|+||||++..+....... -..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATK--GGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhc--CCEEEEEECCcchH
Confidence 36899999999999999998887542 45677887766543
No 276
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.16 E-value=0.022 Score=60.08 Aligned_cols=59 Identities=19% Similarity=0.134 Sum_probs=43.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhcc----CCCCeEEEEEEccCCCHHHHHHHHHHHcCCC
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMED----KLFDEVVMVVVSQKPDYKAIQNEIAGALGLF 230 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 230 (780)
...++-|+|.+|+|||+|+..++-..... ..-..++|++....++.+++ .+|++.++..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 35788999999999999999887654321 11236899999999998876 4566666543
No 277
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.15 E-value=0.039 Score=55.77 Aligned_cols=90 Identities=18% Similarity=0.269 Sum_probs=58.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCC-CHHHHHHHHHHHcCCC-------cCCCCCHH----
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKP-DYKAIQNEIAGALGLF-------LGEHEDVS---- 238 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 238 (780)
+...++|.|.+|+|||||++.+++....+ +-+.++++-+++.. .+.++.+++.+.-... ..+++ ..
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~-~~~r~~ 145 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEP-PGARAR 145 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCC-HHHHHH
Confidence 34678999999999999999999988764 22456777777664 4566666665432110 11111 11
Q ss_pred --HHHHHHHHHh--c-cCcEEEEEeCCCC
Q 037947 239 --ERAHLLRQRL--K-ASRVLVILDDVWN 262 (780)
Q Consensus 239 --~~~~~l~~~L--~-~kr~LlVlDdv~~ 262 (780)
...-.+.+++ + ++..|+++||+-.
T Consensus 146 ~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr 174 (274)
T cd01133 146 VALTGLTMAEYFRDEEGQDVLLFIDNIFR 174 (274)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEEeChhH
Confidence 1223355555 3 7999999999843
No 278
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.14 E-value=0.031 Score=60.74 Aligned_cols=90 Identities=21% Similarity=0.201 Sum_probs=51.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc-CCCHHHHHHHHHHHcCCCcCC---CCCHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-KPDYKAIQNEIAGALGLFLGE---HEDVSERAHLLRQ 246 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 246 (780)
+..++.++|++|+||||.|..++.....+..+ .++.|++.. .+...+-+.......+.+... ..++.+......+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 35789999999999999999998886432112 344444432 122334444555555543221 2234444444444
Q ss_pred HhccCcE-EEEEeCCC
Q 037947 247 RLKASRV-LVILDDVW 261 (780)
Q Consensus 247 ~L~~kr~-LlVlDdv~ 261 (780)
....+.| ++|+|-..
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 4444555 77888664
No 279
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.12 E-value=0.024 Score=52.35 Aligned_cols=121 Identities=21% Similarity=0.242 Sum_probs=64.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc---CCCHHHHHHHHH--H--HcCCCc--CCCCCH------
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ---KPDYKAIQNEIA--G--ALGLFL--GEHEDV------ 237 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~--~--~l~~~~--~~~~~~------ 237 (780)
..|-|++..|.||||+|....-+....+ ..+.++..-+ ......+++.+- . +.+... ......
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g--~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a 80 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHG--YRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAA 80 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHH
Confidence 4688999999999999999988776542 2344444333 233333333330 0 001100 001101
Q ss_pred HHHHHHHHHHhccCcE-EEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchh
Q 037947 238 SERAHLLRQRLKASRV-LVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKD 297 (780)
Q Consensus 238 ~~~~~~l~~~L~~kr~-LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~ 297 (780)
....+..++.+....| |+|||++-..-.+..+. ...+...+.....+..||+|.|+..
T Consensus 81 ~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~--~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 81 AEGWAFAKEAIASGEYDLVILDEINYALGYGLLD--VEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCC--HHHHHHHHHcCCCCCEEEEECCCCC
Confidence 1223344445555444 99999985553322211 1112222255556778999999964
No 280
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.087 Score=57.72 Aligned_cols=131 Identities=17% Similarity=0.291 Sum_probs=76.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-cc
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRL-KA 250 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~ 250 (780)
..-|.++|++|+|||-||+.|+|..... |++|... +++.... | + -+..++.+.+.- ..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkYV---G-----E--SErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKYV---G-----E--SERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHHh---h-----h--HHHHHHHHHHHhhcC
Confidence 4568899999999999999999987554 3455442 2333221 1 0 122233333333 34
Q ss_pred CcEEEEEeCCCCccc-------------cccccCCcccccccccCCCCCcEEEEEecchhHHhhh-c---CCcceEEcCC
Q 037947 251 SRVLVILDDVWNRLD-------------LDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLLYNE-M---NSQKNFLINV 313 (780)
Q Consensus 251 kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~~~~-~---~~~~~~~l~~ 313 (780)
.+++|+||.++.... ...+...+.. .....|.-||-.|...++.... . .-....-+..
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDG-----l~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~l 678 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDG-----LEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGL 678 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcc-----cccccceEEEeecCCCcccchhhcCCCccCceeeecC
Confidence 889999999866521 1111112211 1233466677777776654211 1 1234556667
Q ss_pred CChHHHHHHHHHhhC
Q 037947 314 LSDQEAVQLFEKMSG 328 (780)
Q Consensus 314 L~~~~~~~Lf~~~~~ 328 (780)
-+.+|-.++++..+.
T Consensus 679 Pn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 679 PNAEERVAILKTITK 693 (802)
T ss_pred CCHHHHHHHHHHHhc
Confidence 778888888888776
No 281
>PRK06547 hypothetical protein; Provisional
Probab=96.09 E-value=0.0087 Score=56.61 Aligned_cols=35 Identities=34% Similarity=0.346 Sum_probs=28.9
Q ss_pred HHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 162 DIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 162 ~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.+...+......+|+|.|++|+||||+|+.+.+..
T Consensus 5 ~~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 5 LIAARLCGGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred HHHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34445556778899999999999999999998874
No 282
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.08 E-value=0.023 Score=59.44 Aligned_cols=58 Identities=19% Similarity=0.127 Sum_probs=41.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhcc---C-CCCeEEEEEEccCCCHHHHHHHHHHHcCC
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMED---K-LFDEVVMVVVSQKPDYKAIQNEIAGALGL 229 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 229 (780)
...++.|+|.+|+|||||+..++...... . .-..++|++....++..++ .++++.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 46799999999999999999987643221 1 1235799999888887764 445555543
No 283
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.06 E-value=0.0088 Score=65.85 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=41.8
Q ss_pred cccCCchHHHHHHHHHHc------cCCccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 151 EQFESRMPTFQDIMEALK------DDNINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
.+++|-++.+++|++.|. +.+.+++.++||+|+||||||+.+.+-...
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 457899999999999983 456689999999999999999999987654
No 284
>PTZ00035 Rad51 protein; Provisional
Probab=96.06 E-value=0.037 Score=58.47 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=55.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhc---c-CCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcC---------CCCCH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVME---D-KLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLG---------EHEDV 237 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~---~-~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 237 (780)
...++.|+|.+|+|||||+..++-.... . ..-..++|++....++.+++ .++++.++.... ...+.
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 3578999999999999999988765431 1 11235779998888887774 445665544321 01122
Q ss_pred HHHHHH---HHHHhcc-CcEEEEEeCCCC
Q 037947 238 SERAHL---LRQRLKA-SRVLVILDDVWN 262 (780)
Q Consensus 238 ~~~~~~---l~~~L~~-kr~LlVlDdv~~ 262 (780)
++.... +...+.. +--|||+|.+..
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 333332 2333333 445899998743
No 285
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.06 E-value=0.032 Score=58.06 Aligned_cols=95 Identities=17% Similarity=0.256 Sum_probs=57.2
Q ss_pred CchHHHHHHHHHHcc----CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCC
Q 037947 155 SRMPTFQDIMEALKD----DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLF 230 (780)
Q Consensus 155 gr~~~~~~l~~~L~~----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~ 230 (780)
+|........+++.. ...+-+.++|..|+|||.||..+++....+ -..+.+++++ +++.++......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~--g~~v~~~~~~------~l~~~lk~~~~~- 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK--GVSSTLLHFP------EFIRELKNSISD- 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEEEHH------HHHHHHHHHHhc-
Confidence 444455555555542 245678999999999999999999998744 2335566543 455555544421
Q ss_pred cCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCc--cccc
Q 037947 231 LGEHEDVSERAHLLRQRLKASRVLVILDDVWNR--LDLD 267 (780)
Q Consensus 231 ~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~ 267 (780)
.. .. ...+.++ +-=||||||+... .+|.
T Consensus 206 ---~~-~~----~~l~~l~-~~dlLiIDDiG~e~~s~~~ 235 (306)
T PRK08939 206 ---GS-VK----EKIDAVK-EAPVLMLDDIGAEQMSSWV 235 (306)
T ss_pred ---Cc-HH----HHHHHhc-CCCEEEEecCCCccccHHH
Confidence 11 11 1222222 4558999999544 4453
No 286
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.0003 Score=68.67 Aligned_cols=78 Identities=23% Similarity=0.219 Sum_probs=45.6
Q ss_pred CCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCCc---ccccccCCCcEE
Q 037947 532 CPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGDV---ATVGALKKLVIL 608 (780)
Q Consensus 532 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~---~~i~~l~~L~~L 608 (780)
+.+.+.|++.++.+.. | ++..+++.|.||.|+-|.|++| ..+..+++|+.|.|+.|.|..+ .-+.++++|++|
T Consensus 18 l~~vkKLNcwg~~L~D-I--sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-I--SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccH-H--HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 4456666666665542 1 3345677777777777777665 2355666666666666665553 334455555555
Q ss_pred EeecC
Q 037947 609 SFRNS 613 (780)
Q Consensus 609 ~l~~~ 613 (780)
+|..|
T Consensus 94 WL~EN 98 (388)
T KOG2123|consen 94 WLDEN 98 (388)
T ss_pred hhccC
Confidence 55544
No 287
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.05 E-value=0.038 Score=58.30 Aligned_cols=58 Identities=28% Similarity=0.310 Sum_probs=42.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCC----CCeEEEEEEccCCCHHHHHHHHHHHcCC
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKL----FDEVVMVVVSQKPDYKAIQNEIAGALGL 229 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 229 (780)
...++-|+|++|+|||+++.+++........ =..++|++....++..++.+ +++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcCC
Confidence 4578999999999999999999876543211 14689999999888877654 4455543
No 288
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.97 E-value=0.01 Score=53.67 Aligned_cols=30 Identities=43% Similarity=0.540 Sum_probs=26.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCC
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFD 203 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 203 (780)
.-|.|.|++|+||||+++.+.+..+... |.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g-~k 35 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG-YK 35 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC-ce
Confidence 4689999999999999999999987764 43
No 289
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.96 E-value=0.028 Score=60.18 Aligned_cols=84 Identities=17% Similarity=0.208 Sum_probs=45.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc-CCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-KPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA 250 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 250 (780)
..++.++|++|+||||++..++........+ .+..++... .....+.++..++.++....... . ...+.+.+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~---~-~~~l~~~l~~ 297 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK---D-IKKFKETLAR 297 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehH---H-HHHHHHHHHh
Confidence 4689999999999999999998765322122 233333222 12233444445555554332211 1 2234444433
Q ss_pred -CcEEEEEeCC
Q 037947 251 -SRVLVILDDV 260 (780)
Q Consensus 251 -kr~LlVlDdv 260 (780)
..=+||+|-.
T Consensus 298 ~~~D~VLIDTa 308 (432)
T PRK12724 298 DGSELILIDTA 308 (432)
T ss_pred CCCCEEEEeCC
Confidence 3336888843
No 290
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.93 E-value=0.029 Score=53.56 Aligned_cols=29 Identities=28% Similarity=0.452 Sum_probs=25.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
...+|+|.|++|+||||+|+.+.......
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 45689999999999999999999987543
No 291
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.90 E-value=0.03 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.652 Sum_probs=22.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
+|.|+|.+|+||||+|+.+......
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999988753
No 292
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.87 E-value=0.063 Score=56.59 Aligned_cols=90 Identities=18% Similarity=0.175 Sum_probs=56.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC-CCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK-PDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLK 249 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 249 (780)
+.+++.++|+.|+||||++..++.....++ ..+.+++.... ....+-++...+.++.......+..+....+...-.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 457999999999999999999988765442 34666666533 233455666666666544333345555444433221
Q ss_pred -cCcEEEEEeCCCC
Q 037947 250 -ASRVLVILDDVWN 262 (780)
Q Consensus 250 -~kr~LlVlDdv~~ 262 (780)
+..=+|++|-...
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3345788887644
No 293
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.87 E-value=0.0059 Score=59.81 Aligned_cols=113 Identities=23% Similarity=0.280 Sum_probs=74.5
Q ss_pred ccCCCCCCEEEccCccCCCcccccccCCCcEEEeecC--CCC-ccChhhcCCCCCCEEecCCCCCCc---ccCccccCCC
Q 037947 577 LGCLINLQTLSFECCVLGDVATVGALKKLVILSFRNS--HIE-QLPEEIGQLTRLKLLDLSNCSKLK---SIRPNVISNL 650 (780)
Q Consensus 577 i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~--~l~-~lp~~i~~l~~L~~L~l~~~~~l~---~~~~~~l~~l 650 (780)
.-.+.+|++|++.++.++....+-.|++|+.|.++.| .+. .++....++++|++|++++ |+++ .++| +..+
T Consensus 39 ~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~p--l~~l 115 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRP--LKEL 115 (260)
T ss_pred cccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccch--hhhh
Confidence 3456778888888888888888888999999999988 433 5666666779999999998 5544 4433 5677
Q ss_pred cccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCCC
Q 037947 651 PRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQV 696 (780)
Q Consensus 651 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 696 (780)
.+|..|++.+|.... ...+.. .-+.-+++|..|+-......+
T Consensus 116 ~nL~~Ldl~n~~~~~-l~dyre---~vf~ll~~L~~LD~~dv~~~E 157 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTN-LDDYRE---KVFLLLPSLKYLDGCDVDGEE 157 (260)
T ss_pred cchhhhhcccCCccc-cccHHH---HHHHHhhhhccccccccCCcc
Confidence 788888888774321 111111 223445566666544333333
No 294
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=95.86 E-value=0.0086 Score=70.30 Aligned_cols=194 Identities=18% Similarity=0.170 Sum_probs=92.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH-hccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCc---CCCCCHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV-MEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFL---GEHEDVSERAHLLRQ 246 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---~~~~~~~~~~~~l~~ 246 (780)
+.+++.|.|+.|.||||+.+.+.-.. ..+.. ++|.+.....+ ..+.++...++... ...++...-...+..
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~ 395 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISA 395 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHH
Confidence 44789999999999999999997652 11110 11111110000 00111111111000 000001112223333
Q ss_pred Hhc--cCcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhHHhhhcCCc--ceEEcCCCChHHHHHH
Q 037947 247 RLK--ASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLLYNEMNSQ--KNFLINVLSDQEAVQL 322 (780)
Q Consensus 247 ~L~--~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~~~~~~~~--~~~~l~~L~~~~~~~L 322 (780)
.+. ..+-|+++|......+...-......++..+. ..|+.+|+||............. ....+. ++.+ ....
T Consensus 396 il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l~p 471 (771)
T TIGR01069 396 ILSKTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TLSP 471 (771)
T ss_pred HHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CCce
Confidence 333 47899999998766443221111001111112 35788999999987642111111 111111 1111 0000
Q ss_pred HHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHHhCCChhHHHHHHHHHhc
Q 037947 323 FEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATALRNKSLFVWKDALLQLRS 378 (780)
Q Consensus 323 f~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~~~~~~l~~ 378 (780)
..+...+... ...|-.|++++ |+|-.|..-|..+......++..++..+..
T Consensus 472 ~Ykl~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 472 TYKLLKGIPG----ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred EEEECCCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0000001111 24577788877 999999998888876666667777766544
No 295
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.86 E-value=0.045 Score=58.67 Aligned_cols=91 Identities=18% Similarity=0.167 Sum_probs=55.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccC--CCCeEEEEEEccC-CCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDK--LFDEVVMVVVSQK-PDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQR 247 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 247 (780)
..++|.++|+.|+||||.+..++....... +-..+..+++... ....+-++..++.++.+.....+.......+..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~- 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ- 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH-
Confidence 357999999999999999999988765321 1234555655532 223334666666676654443334444444433
Q ss_pred hccCcEEEEEeCCCCc
Q 037947 248 LKASRVLVILDDVWNR 263 (780)
Q Consensus 248 L~~kr~LlVlDdv~~~ 263 (780)
+ .+.=++++|.....
T Consensus 252 ~-~~~DlVLIDTaGr~ 266 (388)
T PRK12723 252 S-KDFDLVLVDTIGKS 266 (388)
T ss_pred h-CCCCEEEEcCCCCC
Confidence 2 34458889987443
No 296
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.85 E-value=0.052 Score=57.13 Aligned_cols=57 Identities=25% Similarity=0.277 Sum_probs=42.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccC----CCCeEEEEEEccCCCHHHHHHHHHHHcC
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDK----LFDEVVMVVVSQKPDYKAIQNEIAGALG 228 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 228 (780)
...++-|+|++|+|||+++.+++....... .-..++||+....++.+++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 357899999999999999999987754211 11368999999988887765 4455554
No 297
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.85 E-value=0.016 Score=67.70 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=58.2
Q ss_pred ccCCchHHHHHHHHHHcc---------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHH
Q 037947 152 QFESRMPTFQDIMEALKD---------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNE 222 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 222 (780)
.++|.++.++.+.+.+.. .....+.++|++|+|||++|+.++..... ..+.++.+.-.... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccc----c
Confidence 467888888888887761 12357889999999999999999887631 22344444322111 1
Q ss_pred HHHHcCCCcCCCCCHHHHHHHHHHHhccCc-EEEEEeCCCCc
Q 037947 223 IAGALGLFLGEHEDVSERAHLLRQRLKASR-VLVILDDVWNR 263 (780)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr-~LlVlDdv~~~ 263 (780)
+.+-++.+..... .+....+.+.++.++ .+++||++...
T Consensus 530 ~~~LiG~~~gyvg--~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPGYVG--FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCCccc--ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 2222332211100 011123444454444 59999999776
No 298
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.83 E-value=0.05 Score=54.70 Aligned_cols=86 Identities=16% Similarity=0.230 Sum_probs=55.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCC-----------------
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGE----------------- 233 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~----------------- 233 (780)
...++.|+|.+|+|||++|.++......+ =..++|++..+. ..++.+++ .+++....+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 45789999999999999999997654332 456888888654 45555553 333321110
Q ss_pred ---CCCHHHHHHHHHHHhcc-CcEEEEEeCCC
Q 037947 234 ---HEDVSERAHLLRQRLKA-SRVLVILDDVW 261 (780)
Q Consensus 234 ---~~~~~~~~~~l~~~L~~-kr~LlVlDdv~ 261 (780)
..+.++....+.+.++. +.-++|+|.+.
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 11234566666666664 55589999875
No 299
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.042 Score=61.72 Aligned_cols=94 Identities=18% Similarity=0.282 Sum_probs=60.9
Q ss_pred ccccCCchHHHHHHHHHHc---------cC---CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHH
Q 037947 150 YEQFESRMPTFQDIMEALK---------DD---NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYK 217 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~---------~~---~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 217 (780)
-+++-|-++.+.+|.+.+. .. +..=|.++|++|.|||-+|+.|+....- -|++|...
T Consensus 671 WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKGP---- 739 (953)
T KOG0736|consen 671 WDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKGP---- 739 (953)
T ss_pred hhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecCH----
Confidence 3456678888888888765 11 2456889999999999999999987543 35566543
Q ss_pred HHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCc
Q 037947 218 AIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNR 263 (780)
Q Consensus 218 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~ 263 (780)
+++..-.. .+.+...+...+.=..++++|+||.+++.
T Consensus 740 ELLNMYVG---------qSE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 ELLNMYVG---------QSEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred HHHHHHhc---------chHHHHHHHHHHhhccCCeEEEecccccc
Confidence 33332221 11222222333333449999999999876
No 300
>PRK07667 uridine kinase; Provisional
Probab=95.82 E-value=0.014 Score=56.62 Aligned_cols=38 Identities=26% Similarity=0.547 Sum_probs=29.8
Q ss_pred HHHHHHHc--cCCccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 161 QDIMEALK--DDNINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 161 ~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
+.|.+.+. .+...+|+|.|.+|+||||+|+.+......
T Consensus 4 ~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 4 NELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45555554 344579999999999999999999988754
No 301
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.82 E-value=0.1 Score=45.78 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=34.0
Q ss_pred ccCCchHHHHHHHHHHc-------cCCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 152 QFESRMPTFQDIMEALK-------DDNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.++|..-..+.+++++. .++.-|++.+|.+|+|||.+++.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 45676666666666554 2346789999999999999999998884
No 302
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.81 E-value=0.0079 Score=55.27 Aligned_cols=36 Identities=33% Similarity=0.446 Sum_probs=27.9
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVV 209 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 209 (780)
..+|.+.|.+|+||||||+.+.+...... ..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g--~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG--IKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--S-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEec
Confidence 45899999999999999999999987652 3444543
No 303
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.80 E-value=0.16 Score=59.77 Aligned_cols=61 Identities=11% Similarity=0.233 Sum_probs=42.5
Q ss_pred ccccCCchHHHHHHHHHHc--cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc
Q 037947 150 YEQFESRMPTFQDIMEALK--DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ 212 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 212 (780)
...++|+...+..+.+.+. .....-|.|.|..|+|||++|+.+++..... -...+.+++..
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~ 437 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAA 437 (686)
T ss_pred ccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEeccc
Confidence 3468899888888776665 2334568899999999999999998865322 12344455444
No 304
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.80 E-value=0.049 Score=55.98 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
....+|+|.|+.|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999988866554
No 305
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.022 Score=57.30 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=49.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhcc--CCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhc
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMED--KLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLK 249 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 249 (780)
.++|.++||+|.|||+|.+.++++..++ +.+....-+.++.. .++...+.+-| .-.....+++.+.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsESg------KlV~kmF~kI~ELv~ 246 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSESG------KLVAKMFQKIQELVE 246 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhhhh------hHHHHHHHHHHHHHh
Confidence 4789999999999999999999998654 23333333333221 12222211111 013455667777777
Q ss_pred cCcE--EEEEeCCCCc
Q 037947 250 ASRV--LVILDDVWNR 263 (780)
Q Consensus 250 ~kr~--LlVlDdv~~~ 263 (780)
++.. ++.+|.|.+.
T Consensus 247 d~~~lVfvLIDEVESL 262 (423)
T KOG0744|consen 247 DRGNLVFVLIDEVESL 262 (423)
T ss_pred CCCcEEEEEeHHHHHH
Confidence 6554 5568988655
No 306
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=95.78 E-value=0.0041 Score=59.92 Aligned_cols=118 Identities=17% Similarity=0.104 Sum_probs=55.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh--ccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcC---CCCCHHHHHHHHHHHh
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVM--EDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLG---EHEDVSERAHLLRQRL 248 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~L 248 (780)
++.|.|+.|.||||+.+.+.-... ..+.|- + ... .. -....+++..++.... ..........++...+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v---~--a~~-~~-~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l 73 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFV---P--AES-AE-LPVFDRIFTRIGASDSLAQGLSTFMVEMKETANIL 73 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCe---e--ehh-eE-ecccceEEEEeCCCCchhccccHHHHHHHHHHHHH
Confidence 478999999999999999984321 111111 1 100 00 0000011111111000 0111223334455555
Q ss_pred cc--CcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhHH
Q 037947 249 KA--SRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL 299 (780)
Q Consensus 249 ~~--kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~ 299 (780)
.. ++-++++|+.....+...-......+...+.. ..++.+|++|...++.
T Consensus 74 ~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~ 125 (185)
T smart00534 74 KNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELT 125 (185)
T ss_pred HhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHH
Confidence 55 88999999986553322110000011111111 2367899999988764
No 307
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.78 E-value=0.018 Score=56.05 Aligned_cols=109 Identities=8% Similarity=0.144 Sum_probs=58.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHH-HHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccC
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYK-AIQNEIAGALGLFLGEHEDVSERAHLLRQRLKAS 251 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~-~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~k 251 (780)
.+|.|+|+.|.||||++..+....... ....++. +.+..... .-...+..+-.. ..+.....+.++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t-~e~~~E~~~~~~~~~i~q~~v----g~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILT-IEDPIEFVHESKRSLINQREV----GLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEE-EcCCccccccCccceeeeccc----CCCccCHHHHHHHHhcCC
Confidence 478999999999999999888776432 2333332 22211100 000011111000 011223445567777777
Q ss_pred cEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhH
Q 037947 252 RVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDL 298 (780)
Q Consensus 252 r~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v 298 (780)
+=++++|++.+.+....... ....|-.++.|+....+
T Consensus 75 pd~ii~gEird~e~~~~~l~----------~a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 75 PDVILVGEMRDLETIRLALT----------AAETGHLVMSTLHTNSA 111 (198)
T ss_pred cCEEEEcCCCCHHHHHHHHH----------HHHcCCEEEEEecCCcH
Confidence 77999999977655433221 12234457777765544
No 308
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.78 E-value=0.058 Score=50.82 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=30.9
Q ss_pred CCchHHHHHHHHHHc--cCCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 154 ESRMPTFQDIMEALK--DDNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 154 ~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+|....+.++++.+. .....-|.|+|..|+||+.+|+.+++..
T Consensus 2 iG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred EeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 577777777777665 2333557799999999999999998843
No 309
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.77 E-value=0.98 Score=48.15 Aligned_cols=61 Identities=23% Similarity=0.304 Sum_probs=42.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEE-ccCCCHHHHHHHHHHHcCCCcCC
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVV-SQKPDYKAIQNEIAGALGLFLGE 233 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~~~~ 233 (780)
.+.||-.+|.-|.||||-|-.+++..+.++ +. +.-|++ -..+..-+-++.+.++.+.+...
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~-~k-vllVaaD~~RpAA~eQL~~La~q~~v~~f~ 160 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKG-KK-VLLVAADTYRPAAIEQLKQLAEQVGVPFFG 160 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcC-Cc-eEEEecccCChHHHHHHHHHHHHcCCceec
Confidence 457899999999999999999999987632 22 222222 23445566677888888765543
No 310
>PRK06921 hypothetical protein; Provisional
Probab=95.77 E-value=0.056 Score=55.16 Aligned_cols=39 Identities=31% Similarity=0.368 Sum_probs=29.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEE
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVV 210 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 210 (780)
....+.++|..|+|||.||..+++....+. -..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEH
Confidence 456799999999999999999999875431 234566664
No 311
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.77 E-value=0.029 Score=52.86 Aligned_cols=27 Identities=33% Similarity=0.554 Sum_probs=23.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
+.|.+.|.+|+||||+|+++.+..+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 568899999999999999999987655
No 312
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.75 E-value=0.052 Score=53.78 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
+|+|.|.+|+||||+|+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998775
No 313
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.75 E-value=0.018 Score=62.71 Aligned_cols=50 Identities=12% Similarity=0.206 Sum_probs=40.3
Q ss_pred ccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCC
Q 037947 152 QFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFD 203 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 203 (780)
.++||++.++.+...+..+. -|.+.|++|+|||++|+.+.........|.
T Consensus 21 ~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~~F~ 70 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNARAFE 70 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccCcce
Confidence 47899999999988887543 488999999999999999998765443443
No 314
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.75 E-value=0.041 Score=60.12 Aligned_cols=86 Identities=23% Similarity=0.251 Sum_probs=49.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHh-ccCCCCeEEEEEEccCC-CHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhc
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVM-EDKLFDEVVMVVVSQKP-DYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLK 249 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 249 (780)
.+++.++|++|+||||++..++.... .. .-..+..|+..... ...+-+....+.++.......+..+....+.. +.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~-~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~-~~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY-GKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQ-LR 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHH-hC
Confidence 46899999999999999999987765 22 13456666654321 12233344444455443333333444444433 23
Q ss_pred cCcEEEEEeCC
Q 037947 250 ASRVLVILDDV 260 (780)
Q Consensus 250 ~kr~LlVlDdv 260 (780)
..=+|++|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3457888976
No 315
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.74 E-value=0.045 Score=56.72 Aligned_cols=86 Identities=21% Similarity=0.242 Sum_probs=55.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCC-----CCCHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGE-----HEDVSERAHLLR 245 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 245 (780)
..+++-|+|+.|+||||||..+....... -..++|+...+.++.. .++.++.+... +...++....+.
T Consensus 52 ~G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~~-----~a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 52 RGRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDPE-----YAESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---HH-----HHHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred cCceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchhh-----HHHhcCccccceEEecCCcHHHHHHHHH
Confidence 35799999999999999999999876544 4568999998887653 34445544321 223555666666
Q ss_pred HHhcc-CcEEEEEeCCCCc
Q 037947 246 QRLKA-SRVLVILDDVWNR 263 (780)
Q Consensus 246 ~~L~~-kr~LlVlDdv~~~ 263 (780)
..++. .--++|+|.|-..
T Consensus 125 ~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHHTTSESEEEEE-CTT-
T ss_pred HHhhcccccEEEEecCccc
Confidence 66655 3458999998665
No 316
>PRK04328 hypothetical protein; Provisional
Probab=95.71 E-value=0.056 Score=54.75 Aligned_cols=41 Identities=22% Similarity=0.236 Sum_probs=32.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK 213 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 213 (780)
...++.|.|.+|+|||+||.++......+ -..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC
Confidence 45789999999999999999987664333 456788887764
No 317
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.71 E-value=0.021 Score=52.07 Aligned_cols=43 Identities=23% Similarity=0.317 Sum_probs=33.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHH
Q 037947 175 IGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNE 222 (780)
Q Consensus 175 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 222 (780)
|.++|++|+|||+||+.+++.... ...-+.++...+..++...
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g~ 44 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIGS 44 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEeccccccccceee
Confidence 679999999999999999998722 2455678888887776654
No 318
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.70 E-value=0.041 Score=52.47 Aligned_cols=75 Identities=27% Similarity=0.346 Sum_probs=44.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA 250 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 250 (780)
+..-+.++|..|+|||.||..+.+....++ ..+.|+++ .+++..+-. ..... ... .+.+.+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g--~~v~f~~~------~~L~~~l~~----~~~~~-~~~----~~~~~l~~ 108 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKG--YSVLFITA------SDLLDELKQ----SRSDG-SYE----ELLKRLKR 108 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEH------HHHHHHHHC----CHCCT-THC----HHHHHHHT
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCC--cceeEeec------Cceeccccc----ccccc-chh----hhcCcccc
Confidence 345699999999999999999998876542 23566653 445555432 11111 122 22333443
Q ss_pred CcEEEEEeCCCCc
Q 037947 251 SRVLVILDDVWNR 263 (780)
Q Consensus 251 kr~LlVlDdv~~~ 263 (780)
-=||||||+...
T Consensus 109 -~dlLilDDlG~~ 120 (178)
T PF01695_consen 109 -VDLLILDDLGYE 120 (178)
T ss_dssp -SSCEEEETCTSS
T ss_pred -ccEeccccccee
Confidence 347889999654
No 319
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.70 E-value=0.067 Score=54.31 Aligned_cols=89 Identities=20% Similarity=0.185 Sum_probs=57.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH-cCCCcC-CCCCHH---HHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA-LGLFLG-EHEDVS---ERAHLLR 245 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~-l~~~~~-~~~~~~---~~~~~l~ 245 (780)
..+++=|+|+.|.||||+|.+++-..+.. -..++|++..+.+++..+.. +... +..-.- ...+.+ +.+..+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 45789999999999999999998776554 44789999999999877644 3333 222111 111122 2233333
Q ss_pred HHhccCcEEEEEeCCCC
Q 037947 246 QRLKASRVLVILDDVWN 262 (780)
Q Consensus 246 ~~L~~kr~LlVlDdv~~ 262 (780)
.....+--|+|+|.+-.
T Consensus 136 ~~~~~~i~LvVVDSvaa 152 (279)
T COG0468 136 RSGAEKIDLLVVDSVAA 152 (279)
T ss_pred HhccCCCCEEEEecCcc
Confidence 33333456999998743
No 320
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.67 E-value=0.088 Score=56.94 Aligned_cols=88 Identities=23% Similarity=0.319 Sum_probs=50.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc-CCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-KPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLK 249 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 249 (780)
...+|+++|+.|+||||++..+............+..++... .....+-+....+.++.......+..+....+ ..++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al-~~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLML-HELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHH-HHhc
Confidence 347999999999999999999987643322223444444332 22344445556666665544333344433222 2344
Q ss_pred cCcEEEEEeCC
Q 037947 250 ASRVLVILDDV 260 (780)
Q Consensus 250 ~kr~LlVlDdv 260 (780)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 43 35666754
No 321
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.66 E-value=0.01 Score=57.64 Aligned_cols=26 Identities=46% Similarity=0.679 Sum_probs=23.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
||+|.|++|+||||+|+.+.......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 69999999999999999999988654
No 322
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.64 E-value=0.11 Score=50.34 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=60.2
Q ss_pred ccccCCchHHHHHHHHH----HccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHH
Q 037947 150 YEQFESRMPTFQDIMEA----LKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAG 225 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~----L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 225 (780)
-..++|-+...+.+++- +......-|.+||.-|+|||+|++.+.+....+. -. -|.|.+.
T Consensus 59 L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~g--lr--LVEV~k~------------ 122 (287)
T COG2607 59 LADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEG--LR--LVEVDKE------------ 122 (287)
T ss_pred HHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcC--Ce--EEEEcHH------------
Confidence 34567877777776653 3344456689999999999999999999886652 11 2333221
Q ss_pred HcCCCcCCCCCHHHHHHHHHHHhcc--CcEEEEEeCCCCc---cccccccCCc
Q 037947 226 ALGLFLGEHEDVSERAHLLRQRLKA--SRVLVILDDVWNR---LDLDAVGIPY 273 (780)
Q Consensus 226 ~l~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~---~~~~~l~~~~ 273 (780)
.-.....|.+.|+. .||+|+.||+.-. .....++..+
T Consensus 123 -----------dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~L 164 (287)
T COG2607 123 -----------DLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSAL 164 (287)
T ss_pred -----------HHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHh
Confidence 01112234455544 8999999998433 3344444443
No 323
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.62 E-value=0.0096 Score=53.38 Aligned_cols=22 Identities=59% Similarity=0.924 Sum_probs=20.5
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 037947 175 IGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 175 v~I~G~gGiGKTtLa~~v~~~~ 196 (780)
|.|.|++|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 324
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.59 E-value=0.074 Score=54.46 Aligned_cols=89 Identities=22% Similarity=0.229 Sum_probs=50.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH--HHHHHHHHHHcCCCcC---CCCCHHHH-HHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY--KAIQNEIAGALGLFLG---EHEDVSER-AHLL 244 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~---~~~~~~~~-~~~l 244 (780)
+.++|.++|++|+||||++..++...... -..+.+++... +.. .+-+....+..+.... ...+.... ...+
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D~-~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGDT-FRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCCC-CCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 45789999999999999999999877544 23455565442 222 2333444555553321 11223222 2334
Q ss_pred HHHhccCcEEEEEeCCCC
Q 037947 245 RQRLKASRVLVILDDVWN 262 (780)
Q Consensus 245 ~~~L~~kr~LlVlDdv~~ 262 (780)
.....+..=++++|-...
T Consensus 148 ~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHCCCCEEEEeCCCC
Confidence 433334445788887643
No 325
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.59 E-value=0.03 Score=55.34 Aligned_cols=61 Identities=28% Similarity=0.322 Sum_probs=40.0
Q ss_pred HHHHHHHHHc--cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHH
Q 037947 159 TFQDIMEALK--DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAI 219 (780)
Q Consensus 159 ~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 219 (780)
...++++.+. ..+..+|+|.|++|+|||||...+......+.+=-.++-|.-|..++--.+
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 4556666665 346789999999999999999999999887654445666666666654333
No 326
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.56 E-value=0.0085 Score=59.05 Aligned_cols=24 Identities=33% Similarity=0.372 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
.+++.|+|+.|.||||+.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999999743
No 327
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.54 E-value=0.06 Score=51.58 Aligned_cols=120 Identities=20% Similarity=0.250 Sum_probs=64.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc--CCCHHHHHH------HHHHHcCCCcC------CCCC
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ--KPDYKAIQN------EIAGALGLFLG------EHED 236 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~------~i~~~l~~~~~------~~~~ 236 (780)
+..+++|+|+.|.|||||++.++..... ..+.+++.-.+ ..+...... ++++.++.... .-+.
T Consensus 24 ~G~~~~l~G~nGsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 24 AGEIVGILGPNGAGKSTLLKTLAGLLKP---SSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4578999999999999999999875432 34444442111 112222221 23444443211 1111
Q ss_pred HHHHHHHHHHHhccCcEEEEEeCCCCccccc---cccCCcccccccccCCCCCcEEEEEecchhH
Q 037947 237 VSERAHLLRQRLKASRVLVILDDVWNRLDLD---AVGIPYKNYQNEIKDDRRRCAMLLTSRRKDL 298 (780)
Q Consensus 237 ~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~---~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v 298 (780)
-+...-.+...+...+-++++|+-...-+.+ .+...+ ..+. ...+..||++|.+...
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l----~~~~-~~~~~tiii~sh~~~~ 160 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELL----RRLA-RERGKTVVMVLHDLNL 160 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHH----HHHH-HhcCCEEEEEeCCHHH
Confidence 2233334666677788899999975543322 222211 1111 1125678888887654
No 328
>PTZ00301 uridine kinase; Provisional
Probab=95.52 E-value=0.013 Score=57.34 Aligned_cols=26 Identities=38% Similarity=0.685 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
+.+|+|.|.+|+||||||+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 46899999999999999999987764
No 329
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.51 E-value=0.042 Score=56.03 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
+.|.|.|.+|+||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999998765
No 330
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.51 E-value=0.013 Score=57.73 Aligned_cols=27 Identities=33% Similarity=0.492 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.+..+|+|.|++|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999999999876
No 331
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.50 E-value=0.034 Score=53.22 Aligned_cols=116 Identities=12% Similarity=0.110 Sum_probs=60.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCC---------------cCCCC
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLF---------------LGEHE 235 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~---------------~~~~~ 235 (780)
...+++|.|+.|.|||||++.+...... -.+.+++.-. ++......+-..++.. ...-+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS 100 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKP---QQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFS 100 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCC
Confidence 4568999999999999999999875432 1233332211 1111111111111100 00011
Q ss_pred CHHHHHHHHHHHhccCcEEEEEeCCCCcccccc---ccCCcccccccccCCCCCcEEEEEecchhHH
Q 037947 236 DVSERAHLLRQRLKASRVLVILDDVWNRLDLDA---VGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL 299 (780)
Q Consensus 236 ~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~---l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~ 299 (780)
..+...-.+...+-.++-++++|+..+.-+... +...+ .....+..||++|.+....
T Consensus 101 ~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l-------~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 101 GGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLI-------FEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH-------HHHcCCCEEEEEecCHHHH
Confidence 112223345666677888999999866533222 21111 1112366788888887653
No 332
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.50 E-value=0.081 Score=58.19 Aligned_cols=88 Identities=20% Similarity=0.257 Sum_probs=50.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc-CCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-KPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA 250 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 250 (780)
..|++++|+.|+||||++.+++.....+..-..+..++... .....+-++...+..+.......+..+....+ ..+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 47999999999999999999998775432222345555432 22344445555666655443222222222222 23344
Q ss_pred CcEEEEEeCCC
Q 037947 251 SRVLVILDDVW 261 (780)
Q Consensus 251 kr~LlVlDdv~ 261 (780)
+ ..+++|-..
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 4 466777653
No 333
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.49 E-value=0.029 Score=56.25 Aligned_cols=61 Identities=31% Similarity=0.402 Sum_probs=46.9
Q ss_pred HHHHHHHc--cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHH
Q 037947 161 QDIMEALK--DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQN 221 (780)
Q Consensus 161 ~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 221 (780)
.+++..+. ..+..+|+|.|.||+|||||...+......+.+--.++-|.-|..++--.++-
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLG 100 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILG 100 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccc
Confidence 45555554 45677999999999999999999999998887666777777777776544443
No 334
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.49 E-value=0.013 Score=46.03 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+|+|.|.+|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 335
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.49 E-value=0.027 Score=53.54 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
.|.|.|++|+||||+|+.+.+...
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~ 25 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG 25 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999853
No 336
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.00085 Score=65.66 Aligned_cols=100 Identities=23% Similarity=0.264 Sum_probs=70.5
Q ss_pred CCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCCcccccccCCCcEEEeecCCCCccCh--hhcCCCCCCEEecC
Q 037947 557 VPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQLPE--EIGQLTRLKLLDLS 634 (780)
Q Consensus 557 l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~ 634 (780)
+.+.+.|++.||.++++ +-+.+++.|++|.|+-|.++.+..+..+.+|+.|.|+.|.|.+|.. .+.++++|+.|.|.
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 55677788888888764 2345688888899988888888888888888888888888777643 46677888888887
Q ss_pred CCCCCcccCc----cccCCCcccceee
Q 037947 635 NCSKLKSIRP----NVISNLPRLEELY 657 (780)
Q Consensus 635 ~~~~l~~~~~----~~l~~l~~L~~L~ 657 (780)
.++....-++ ..+.-|++|+.|+
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 6433332222 1244466666665
No 337
>PRK08233 hypothetical protein; Provisional
Probab=95.41 E-value=0.013 Score=56.19 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
..+|+|.|.+|+||||+|+.+.....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998753
No 338
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.41 E-value=0.081 Score=53.93 Aligned_cols=40 Identities=30% Similarity=0.406 Sum_probs=31.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ 212 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 212 (780)
...++.|.|++|+|||++|.+++.....+ -..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 45789999999999999999987765433 34678888864
No 339
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.38 E-value=0.014 Score=53.52 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999987653
No 340
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.38 E-value=0.013 Score=57.05 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
++++|.|+.|.|||||.+.+.-..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 799999999999999999997644
No 341
>PRK14974 cell division protein FtsY; Provisional
Probab=95.37 E-value=0.15 Score=53.56 Aligned_cols=90 Identities=23% Similarity=0.250 Sum_probs=50.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCC--CHHHHHHHHHHHcCCCcCCC---CCHHHHH-HHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKP--DYKAIQNEIAGALGLFLGEH---EDVSERA-HLL 244 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~l~~~~~~~---~~~~~~~-~~l 244 (780)
+..+|.++|++|+||||++..++......+ + .++.+.. +.+ ...+-++.....++...... .+..... ..+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g-~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNG-F-SVVIAAG-DTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcC-C-eEEEecC-CcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 467999999999999999999988765442 3 2333432 222 23344556667776543221 1222222 222
Q ss_pred HHHhccCcEEEEEeCCCCc
Q 037947 245 RQRLKASRVLVILDDVWNR 263 (780)
Q Consensus 245 ~~~L~~kr~LlVlDdv~~~ 263 (780)
...-....=++++|-....
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 2222222238999987444
No 342
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.35 E-value=0.015 Score=57.14 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
+...+|+|+|++|+||||||+.+.....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567999999999999999999998754
No 343
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.34 E-value=0.12 Score=51.53 Aligned_cols=49 Identities=18% Similarity=0.187 Sum_probs=33.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEI 223 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 223 (780)
...++.|.|.+|+||||+|.++......+. ..+++++.. -+..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e--~~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQ--LTTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCC--CCHHHHHHHH
Confidence 346899999999999999877766553332 345666633 3556666666
No 344
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.34 E-value=0.13 Score=59.44 Aligned_cols=88 Identities=23% Similarity=0.280 Sum_probs=55.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc-CCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-KPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA 250 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 250 (780)
.++|+++|+.|+||||.+.+++........-..+..++... .....+-++...+.++.......+..+..+.+. .+++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~-~~~~ 263 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA-ALGD 263 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH-HhcC
Confidence 46999999999999999999998764332123455555432 223456666777777765544344555444443 4454
Q ss_pred CcEEEEEeCCC
Q 037947 251 SRVLVILDDVW 261 (780)
Q Consensus 251 kr~LlVlDdv~ 261 (780)
+. +|++|=..
T Consensus 264 ~D-~VLIDTAG 273 (767)
T PRK14723 264 KH-LVLIDTVG 273 (767)
T ss_pred CC-EEEEeCCC
Confidence 43 77888764
No 345
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.34 E-value=0.18 Score=51.48 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=53.2
Q ss_pred HHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCC-------CC
Q 037947 163 IMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGE-------HE 235 (780)
Q Consensus 163 l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-------~~ 235 (780)
..+++...+..+|.|.|.+|+|||||+..+.+..... . .++.+ ..+..+..+ .+.+...+..... ..
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~--~-~~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl 168 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDS--V-PCAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHL 168 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhccC--C-CEEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcC
Confidence 3444556788999999999999999999999987543 2 22222 222223322 2223443322111 11
Q ss_pred CHHHHHHHHHHHhccCcEEEEEeCCCC
Q 037947 236 DVSERAHLLRQRLKASRVLVILDDVWN 262 (780)
Q Consensus 236 ~~~~~~~~l~~~L~~kr~LlVlDdv~~ 262 (780)
+.......+...-....=++|++++.+
T Consensus 169 ~a~mv~~Al~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 169 DAQMIADAAPRLPLDDNGILFIENVGN 195 (290)
T ss_pred cHHHHHHHHHHHhhcCCcEEEEECCCC
Confidence 233344444444333446788999865
No 346
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.064 Score=52.39 Aligned_cols=48 Identities=25% Similarity=0.339 Sum_probs=37.7
Q ss_pred ccccCCchHHHHHHHHHHc-------------cCCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 150 YEQFESRMPTFQDIMEALK-------------DDNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
+.++-|-.++++++.+... -+..+-|.++|++|.|||-+|+.|+|+..
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtd 236 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTD 236 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccC
Confidence 4556677888888777653 13467789999999999999999998754
No 347
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.31 E-value=0.072 Score=49.87 Aligned_cols=124 Identities=15% Similarity=0.125 Sum_probs=64.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEE-EEEEccCCCHHHHHHHHH---HHcCCC--cCCCC------CHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVV-MVVVSQKPDYKAIQNEIA---GALGLF--LGEHE------DVSE 239 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~~~~i~---~~l~~~--~~~~~------~~~~ 239 (780)
...|-|++..|.||||.|..+.-+......=-.++ |+.-.........+.... .+.+.. ....+ ...+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~ 84 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA 84 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence 46788999999999999999988876543211111 333222233334443320 001111 00001 0122
Q ss_pred HHHHHHHHhccCcE-EEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchh
Q 037947 240 RAHLLRQRLKASRV-LVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKD 297 (780)
Q Consensus 240 ~~~~l~~~L~~kr~-LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~ 297 (780)
.....++.+...+| ++|||.+-..-.+.-+. ...+...|.....+..||+|-|+..
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~--~~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLD--VEEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcC--HHHHHHHHHhCCCCCEEEEECCCCC
Confidence 33445555555555 99999985443322111 0111222255566778999999864
No 348
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.31 E-value=0.047 Score=54.56 Aligned_cols=89 Identities=22% Similarity=0.278 Sum_probs=55.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCc---------------CC--
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFL---------------GE-- 233 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~---------------~~-- 233 (780)
...++.|.|.+|+|||++|.++......+ .=+.++|++.... .+++.+.+- .++.+. ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~-~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKN-FGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHH-HT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhh-cCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 45799999999999999999977554332 0135778777554 355555432 333211 00
Q ss_pred ---CCCHHHHHHHHHHHhcc-CcEEEEEeCCCCc
Q 037947 234 ---HEDVSERAHLLRQRLKA-SRVLVILDDVWNR 263 (780)
Q Consensus 234 ---~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~ 263 (780)
..+..+....+.+.++. +...+|+|.+...
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 23466777777777766 5679999987433
No 349
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=95.30 E-value=0.66 Score=48.06 Aligned_cols=159 Identities=9% Similarity=0.076 Sum_probs=88.8
Q ss_pred HHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHH--------hccCCCCeEEEEEE-ccCCCHHHHHHHHHHHcCCC
Q 037947 161 QDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRV--------MEDKLFDEVVMVVV-SQKPDYKAIQNEIAGALGLF 230 (780)
Q Consensus 161 ~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~--------~~~~~F~~~~wv~v-s~~~~~~~~~~~i~~~l~~~ 230 (780)
+.+.+.+..++. .+..++|..|.||+++|..+.+.. ....|-+...++.. +....++++. ++.+.+...
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~ 84 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFS 84 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccC
Confidence 344455555444 567799999999999999998886 12222222333322 2223333332 233333211
Q ss_pred cCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc--cccccCCcccccccccCCCCCcEEEEEecc-hhHHhhhcCCcc
Q 037947 231 LGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRRRCAMLLTSRR-KDLLYNEMNSQK 307 (780)
Q Consensus 231 ~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~~s~iivTtr~-~~v~~~~~~~~~ 307 (780)
.. -.+.+-++|+|++..... .+.+...+ .....++.+|++|.+ ..+.........
T Consensus 85 ~~---------------~~~~~KvvII~~~e~m~~~a~NaLLK~L-------EEPp~~t~~il~~~~~~kll~TI~SRc~ 142 (299)
T PRK07132 85 SF---------------VQSQKKILIIKNIEKTSNSLLNALLKTI-------EEPPKDTYFLLTTKNINKVLPTIVSRCQ 142 (299)
T ss_pred Cc---------------ccCCceEEEEecccccCHHHHHHHHHHh-------hCCCCCeEEEEEeCChHhChHHHHhCeE
Confidence 10 014667889999855532 22222222 444456666665544 334333455678
Q ss_pred eEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCC
Q 037947 308 NFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGG 349 (780)
Q Consensus 308 ~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G 349 (780)
.+++.+++.++..+.+... + .+ ++.+..++...+|
T Consensus 143 ~~~f~~l~~~~l~~~l~~~-~---~~---~~~a~~~a~~~~~ 177 (299)
T PRK07132 143 VFNVKEPDQQKILAKLLSK-N---KE---KEYNWFYAYIFSN 177 (299)
T ss_pred EEECCCCCHHHHHHHHHHc-C---CC---hhHHHHHHHHcCC
Confidence 9999999999998777654 1 11 1345566666665
No 350
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.29 E-value=0.063 Score=50.66 Aligned_cols=113 Identities=16% Similarity=0.167 Sum_probs=60.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEE-------EEccCCCH--HHHHHHHHHHcCCCcCCCCCHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMV-------VVSQKPDY--KAIQNEIAGALGLFLGEHEDVSERA 241 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv-------~vs~~~~~--~~~~~~i~~~l~~~~~~~~~~~~~~ 241 (780)
...+++|+|+.|.|||||++.+....... .+.+++ .+.+.+.. ..+...+.-. ....-+.-+...
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~---~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~r 99 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWG---SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQR 99 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHH
Confidence 45689999999999999999998754321 121111 12222211 1222222210 111122123333
Q ss_pred HHHHHHhccCcEEEEEeCCCCcccccc---ccCCcccccccccCCCCCcEEEEEecchhH
Q 037947 242 HLLRQRLKASRVLVILDDVWNRLDLDA---VGIPYKNYQNEIKDDRRRCAMLLTSRRKDL 298 (780)
Q Consensus 242 ~~l~~~L~~kr~LlVlDdv~~~~~~~~---l~~~~~~~~~~l~~~~~~s~iivTtr~~~v 298 (780)
-.+...+..++-++++|+--+.-+... +...+ ... +..||++|.+...
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l-------~~~--~~tiiivsh~~~~ 150 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLL-------KEL--GITVISVGHRPSL 150 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHH-------HHh--CCEEEEEeCChhH
Confidence 456666777888999998755533322 22222 211 3568888877654
No 351
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.29 E-value=0.15 Score=50.92 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=31.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK 213 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 213 (780)
...++.|.|.+|+||||+|..+......+ -..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCC
Confidence 45789999999999999999987654333 356788876443
No 352
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=95.29 E-value=0.062 Score=63.47 Aligned_cols=185 Identities=18% Similarity=0.202 Sum_probs=93.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHH--hccC------------CCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCC
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRV--MEDK------------LFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHE 235 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~--~~~~------------~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~ 235 (780)
++.+++.|.|+.+.||||+.+.+.-.. ...+ .|+ .++..++...++..-...
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa~~~~~i~~~~-~i~~~ig~~~si~~~lSt------------- 390 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPANEPSEIPVFK-EIFADIGDEQSIEQSLST------------- 390 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCcccCCCccccccc-eEEEecCCccchhhchhH-------------
Confidence 345789999999999999999886442 1111 111 122333332222211111
Q ss_pred CHHHHHHHHHHHhc--cCcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhHHhhhcCCc--ceEEc
Q 037947 236 DVSERAHLLRQRLK--ASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLLYNEMNSQ--KNFLI 311 (780)
Q Consensus 236 ~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~~~~~~~~--~~~~l 311 (780)
.......+...+. ..+-|+++|......+...-......++..+. ..|+.+|+||....+........ ....+
T Consensus 391 -fS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~ 467 (782)
T PRK00409 391 -FSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASV 467 (782)
T ss_pred -HHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEE
Confidence 1122222333333 47789999998766443211100001111112 34789999999987653221111 11112
Q ss_pred CCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHHhCCChhHHHHHHHHHhc
Q 037947 312 NVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATALRNKSLFVWKDALLQLRS 378 (780)
Q Consensus 312 ~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~~~~~~l~~ 378 (780)
.. +. +......+...+... ...|-.|++++ |+|-.|..-|.-+-.........++..+..
T Consensus 468 ~~-d~-~~l~~~Ykl~~G~~g----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 468 EF-DE-ETLRPTYRLLIGIPG----KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred EE-ec-CcCcEEEEEeeCCCC----CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 11 11 110000000001111 24577788877 999999999988876666677777766544
No 353
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.26 E-value=0.017 Score=55.73 Aligned_cols=29 Identities=34% Similarity=0.578 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
++.+|+|.|.+|+||||+|+.++......
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 45799999999999999999999887543
No 354
>PF13245 AAA_19: Part of AAA domain
Probab=95.25 E-value=0.052 Score=43.36 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=19.0
Q ss_pred CccEEEEEcCCCChHH-HHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKT-TLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKT-tLa~~v~~~~ 196 (780)
+.+++.|.|++|.||| |++..+.+..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567888999999999 4555555444
No 355
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.24 E-value=0.14 Score=49.54 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=30.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCC--------CeEEEEEEccC
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLF--------DEVVMVVVSQK 213 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~ 213 (780)
..++.|.|++|+||||++..+.........| ..++|++....
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 3589999999999999999999887654333 25777776665
No 356
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.22 E-value=0.063 Score=52.61 Aligned_cols=84 Identities=26% Similarity=0.423 Sum_probs=53.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC-CCHHHHHHHHHHHcCC-------CcCCCCCHHH----
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK-PDYKAIQNEIAGALGL-------FLGEHEDVSE---- 239 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~-------~~~~~~~~~~---- 239 (780)
...++|.|.+|+|||+|+..+.+... -+..+++-+++. ..+.++.+++...-.. ...+++ ...
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~-~~~r~~~ 89 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEP-PAARYRA 89 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS--HHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhh-HHHHhhh
Confidence 46789999999999999999998874 344588888766 3566666666443111 111111 111
Q ss_pred --HHHHHHHHh--ccCcEEEEEeCC
Q 037947 240 --RAHLLRQRL--KASRVLVILDDV 260 (780)
Q Consensus 240 --~~~~l~~~L--~~kr~LlVlDdv 260 (780)
..-.+.+++ ++++.|+++||+
T Consensus 90 ~~~a~t~AEyfrd~G~dVlli~Dsl 114 (215)
T PF00006_consen 90 PYTALTIAEYFRDQGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEETH
T ss_pred hccchhhhHHHhhcCCceeehhhhh
Confidence 111233333 579999999998
No 357
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.22 E-value=0.012 Score=60.19 Aligned_cols=91 Identities=19% Similarity=0.318 Sum_probs=48.7
Q ss_pred HHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHH
Q 037947 160 FQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSE 239 (780)
Q Consensus 160 ~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~ 239 (780)
...+++.+...+ +-|.++|+.|+|||++++...+...... | ...-++.+...+...+++.+-..+......
T Consensus 22 ~~~ll~~l~~~~-~pvLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~------ 92 (272)
T PF12775_consen 22 YSYLLDLLLSNG-RPVLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQKIIESKLEKRRGR------ 92 (272)
T ss_dssp HHHHHHHHHHCT-EEEEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHHHCCCTTECECTTE------
T ss_pred HHHHHHHHHHcC-CcEEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC------
Confidence 345566655554 4568999999999999999876543321 1 234455555544444332221111110000
Q ss_pred HHHHHHHHhccCcEEEEEeCCCCc
Q 037947 240 RAHLLRQRLKASRVLVILDDVWNR 263 (780)
Q Consensus 240 ~~~~l~~~L~~kr~LlVlDdv~~~ 263 (780)
...--.+|+.++++||+.-.
T Consensus 93 ----~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 93 ----VYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp ----EEEEESSSEEEEEEETTT-S
T ss_pred ----CCCCCCCcEEEEEecccCCC
Confidence 00001358899999998443
No 358
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.19 E-value=0.035 Score=50.52 Aligned_cols=39 Identities=21% Similarity=0.341 Sum_probs=29.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ 212 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 212 (780)
++|.|+|+.|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 589999999999999999999998765 355555666655
No 359
>PRK06762 hypothetical protein; Provisional
Probab=95.18 E-value=0.019 Score=54.28 Aligned_cols=25 Identities=44% Similarity=0.605 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..+|.|.|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999999876
No 360
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.17 E-value=0.019 Score=55.49 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+.++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
No 361
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.16 E-value=0.07 Score=48.96 Aligned_cols=103 Identities=26% Similarity=0.322 Sum_probs=57.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA 250 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 250 (780)
...+++|+|+.|.|||||++.+...... ..+.+|+.-.. .++.... -+..+...-.+...+..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~~-------------~i~~~~~-lS~G~~~rv~laral~~ 87 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGSTV-------------KIGYFEQ-LSGGEKMRLALAKLLLE 87 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCeE-------------EEEEEcc-CCHHHHHHHHHHHHHhc
Confidence 4578999999999999999999775432 23344432100 0000000 11122233345666677
Q ss_pred CcEEEEEeCCCCccccc---cccCCcccccccccCCCCCcEEEEEecchhHH
Q 037947 251 SRVLVILDDVWNRLDLD---AVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL 299 (780)
Q Consensus 251 kr~LlVlDdv~~~~~~~---~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~ 299 (780)
++-++++|+-...-+.. .+...+ ... +..||++|.+....
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l-------~~~--~~til~~th~~~~~ 130 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEAL-------KEY--PGTVILVSHDRYFL 130 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHH-------HHc--CCEEEEEECCHHHH
Confidence 78899999975553322 222222 211 24688888776543
No 362
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.15 E-value=0.037 Score=52.77 Aligned_cols=47 Identities=28% Similarity=0.315 Sum_probs=33.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEI 223 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 223 (780)
..+|+|-||=|+||||||+.+.++.... .++-.+.+++=++.+..++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~ 50 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDP 50 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhH
Confidence 4689999999999999999999988633 2333445554444444444
No 363
>PRK05439 pantothenate kinase; Provisional
Probab=95.13 E-value=0.15 Score=52.85 Aligned_cols=43 Identities=23% Similarity=0.202 Sum_probs=29.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ 212 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 212 (780)
...-+|+|.|.+|+||||+|+.+.........-..+.-++...
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~Dd 126 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDG 126 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccc
Confidence 4457999999999999999999988654321112344444444
No 364
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.4 Score=53.71 Aligned_cols=70 Identities=21% Similarity=0.274 Sum_probs=46.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhc-cC
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLK-AS 251 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~-~k 251 (780)
.-|.++|++|.|||.||..++..... -+++|..+ +++...+ |. -++..+.+.+.-+ -+
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~-------~fisvKGP----ElL~KyI---Ga-------SEq~vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNL-------RFISVKGP----ELLSKYI---GA-------SEQNVRDLFERAQSAK 760 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCe-------eEEEecCH----HHHHHHh---cc-------cHHHHHHHHHHhhccC
Confidence 45889999999999999999876533 24666553 3333322 21 2333444444444 49
Q ss_pred cEEEEEeCCCCc
Q 037947 252 RVLVILDDVWNR 263 (780)
Q Consensus 252 r~LlVlDdv~~~ 263 (780)
++++++|..++.
T Consensus 761 PCiLFFDEfdSi 772 (952)
T KOG0735|consen 761 PCILFFDEFDSI 772 (952)
T ss_pred CeEEEecccccc
Confidence 999999999776
No 365
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.07 E-value=0.071 Score=51.99 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=25.9
Q ss_pred cCCccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 169 DDNINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 169 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
.++..+|+|+|++|+||||||+.+......
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 456789999999999999999999987643
No 366
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.06 E-value=0.047 Score=52.80 Aligned_cols=43 Identities=30% Similarity=0.449 Sum_probs=31.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHH
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYK 217 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 217 (780)
.|+|.|-||+||||+|..+......++. ..++-|....++++.
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~-~~VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGG-YNVLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCC-ceEEEEeCCCCCChH
Confidence 5899999999999999997777665533 335566666665543
No 367
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.06 E-value=0.022 Score=49.27 Aligned_cols=25 Identities=44% Similarity=0.793 Sum_probs=21.3
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 175 IGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 175 v~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
|-|+|++|+|||++|+.++.+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999998876543
No 368
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.05 E-value=0.033 Score=52.03 Aligned_cols=25 Identities=40% Similarity=0.432 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..++.|.|++|+|||||++.++.+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999999875
No 369
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.02 E-value=0.092 Score=60.91 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=59.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcC-----CCCCHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLG-----EHEDVSERAHLLR 245 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 245 (780)
..+++-|+|++|+||||||..++...... -..++|++..+.++. ..+++++.+.. .....+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 45789999999999999998877655433 356899998887774 36667765432 1222445555555
Q ss_pred HHhcc-CcEEEEEeCCCCc
Q 037947 246 QRLKA-SRVLVILDDVWNR 263 (780)
Q Consensus 246 ~~L~~-kr~LlVlDdv~~~ 263 (780)
..++. +--+||+|.+...
T Consensus 132 ~lv~~~~~~LVVIDSI~aL 150 (790)
T PRK09519 132 MLIRSGALDIVVIDSVAAL 150 (790)
T ss_pred HHhhcCCCeEEEEcchhhh
Confidence 55544 5669999998543
No 370
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.02 E-value=0.2 Score=50.61 Aligned_cols=92 Identities=23% Similarity=0.242 Sum_probs=59.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHh--ccCCCCeEEEEEEccCC-CHHHHHHHHHHHcCCC-------cCCCCCH---
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVM--EDKLFDEVVMVVVSQKP-DYKAIQNEIAGALGLF-------LGEHEDV--- 237 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~--- 237 (780)
+...++|.|-.|+|||+|+..+.+... .+.+-+.++++-+++.. .+.++..++.+.-... ..+++-.
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 446789999999999999999988754 12234678888888764 5677777665532211 0111101
Q ss_pred --HHHHHHHHHHhc---cCcEEEEEeCCCC
Q 037947 238 --SERAHLLRQRLK---ASRVLVILDDVWN 262 (780)
Q Consensus 238 --~~~~~~l~~~L~---~kr~LlVlDdv~~ 262 (780)
....-.+.+++. +++.|+++||+..
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr 177 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTN 177 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhH
Confidence 112234555553 6899999999844
No 371
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.01 E-value=0.097 Score=55.33 Aligned_cols=44 Identities=16% Similarity=0.191 Sum_probs=32.6
Q ss_pred CCchHHHHHHHHHHc--cCCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 154 ESRMPTFQDIMEALK--DDNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 154 ~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
+|+...+.++.+.+. .....-|.|.|..|+||+++|+.+++...
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~ 47 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSK 47 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcC
Confidence 566666666666654 23345578999999999999999987643
No 372
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.17 Score=56.60 Aligned_cols=178 Identities=19% Similarity=0.216 Sum_probs=90.6
Q ss_pred CccccCCchHHH---HHHHHHHccCC---------ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH
Q 037947 149 GYEQFESRMPTF---QDIMEALKDDN---------INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY 216 (780)
Q Consensus 149 ~~~~~~gr~~~~---~~l~~~L~~~~---------~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (780)
.+.+..|.++.+ .++++.|.++. ++-|.++|++|.|||.||+.++....+- | .++|.+.
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP--F-----f~iSGS~-- 218 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP--F-----FSISGSD-- 218 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC--c-----eeccchh--
Confidence 355667877655 45566666432 4668999999999999999999887664 2 2222221
Q ss_pred HHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc----------------cccccCCcccccccc
Q 037947 217 KAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD----------------LDAVGIPYKNYQNEI 280 (780)
Q Consensus 217 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~~~~~l 280 (780)
. -++.-..+ .........+..+.-+++|++|.++.... ..++......
T Consensus 219 --F-VemfVGvG--------AsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDG----- 282 (596)
T COG0465 219 --F-VEMFVGVG--------ASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG----- 282 (596)
T ss_pred --h-hhhhcCCC--------cHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhcc-----
Confidence 0 01111111 11222333444455689999998755421 1111111100
Q ss_pred cCCCCCcEEEEEecchhHHh----hhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHH
Q 037947 281 KDDRRRCAMLLTSRRKDLLY----NEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVA 353 (780)
Q Consensus 281 ~~~~~~s~iivTtr~~~v~~----~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 353 (780)
-..+.|-.|+..|...+|.. +...-...+.++.-+-..-.+.++-++....-.+.. ++ ..|++.+-|.--|
T Consensus 283 F~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~V-dl-~~iAr~tpGfsGA 357 (596)
T COG0465 283 FGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDV-DL-KKIARGTPGFSGA 357 (596)
T ss_pred CCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcC-CH-HHHhhhCCCcccc
Confidence 01122434444455555541 112233455566555566666666555432222211 12 2277777665543
No 373
>PRK03839 putative kinase; Provisional
Probab=95.00 E-value=0.022 Score=54.70 Aligned_cols=24 Identities=46% Similarity=0.652 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
.|.|.|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999864
No 374
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.091 Score=55.13 Aligned_cols=86 Identities=27% Similarity=0.227 Sum_probs=54.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCC-CHHHHHHHHHHHhc-
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHE-DVSERAHLLRQRLK- 249 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~-~~~~~~~~l~~~L~- 249 (780)
..+|.|-|-+|||||||.-++..+...+. .++||+-.+...-. +--++.++.....-. -.+...+.+.+.+.
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~~Qi---klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESLQQI---KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCHHHH---HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 47899999999999999999999987663 67777665543222 223445553322110 01222333444444
Q ss_pred cCcEEEEEeCCCCc
Q 037947 250 ASRVLVILDDVWNR 263 (780)
Q Consensus 250 ~kr~LlVlDdv~~~ 263 (780)
.++-++|+|.+...
T Consensus 167 ~~p~lvVIDSIQT~ 180 (456)
T COG1066 167 EKPDLVVIDSIQTL 180 (456)
T ss_pred cCCCEEEEecccee
Confidence 47889999988543
No 375
>PRK05973 replicative DNA helicase; Provisional
Probab=94.93 E-value=0.22 Score=49.50 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=35.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEI 223 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 223 (780)
+..++.|.|.+|+|||++|.++......+ -..++|++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC--HHHHHHHH
Confidence 45689999999999999999998776533 345777776654 44554444
No 376
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.88 E-value=0.03 Score=55.61 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
.|.|.|++|+||||+|+.+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999988763
No 377
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.87 E-value=0.17 Score=55.38 Aligned_cols=90 Identities=18% Similarity=0.255 Sum_probs=60.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCC-CHHHHHHHHHHHcCCC-------cCCCCCHH----
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKP-DYKAIQNEIAGALGLF-------LGEHEDVS---- 238 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 238 (780)
+...++|.|.+|+|||||+.++.+....+ +-+.++++-+++.. .+.++..++...-... ..+.+ ..
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~-~~~R~~ 219 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEP-PGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCC-HHHHHH
Confidence 45679999999999999999999887644 56788888887654 4667777665432211 11111 11
Q ss_pred --HHHHHHHHHh---ccCcEEEEEeCCCC
Q 037947 239 --ERAHLLRQRL---KASRVLVILDDVWN 262 (780)
Q Consensus 239 --~~~~~l~~~L---~~kr~LlVlDdv~~ 262 (780)
...-.+.+++ ++++.|+++||+-.
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR 248 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFR 248 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchH
Confidence 2233456666 37999999999843
No 378
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.86 E-value=0.092 Score=59.85 Aligned_cols=49 Identities=12% Similarity=0.253 Sum_probs=39.0
Q ss_pred CccccCCchHHHHHHHHHHc--cCCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 149 GYEQFESRMPTFQDIMEALK--DDNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
....++|....+.++.+.+. .....-|.|+|..|+|||++|+.+++...
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 34678899988888888775 23344578999999999999999988653
No 379
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.86 E-value=0.071 Score=50.66 Aligned_cols=73 Identities=23% Similarity=0.185 Sum_probs=44.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEE------EccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVV------VSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHL 243 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 243 (780)
+...+++|+|+.|.|||||++.+..-... ..+.+++. +.+... -+.-+...-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~ 81 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIP---NGDNDEWDGITPVYKPQYID------------------LSGGELQRVA 81 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCC---CCcEEEECCEEEEEEcccCC------------------CCHHHHHHHH
Confidence 34578999999999999999999865432 22333221 111111 1112233334
Q ss_pred HHHHhccCcEEEEEeCCCCc
Q 037947 244 LRQRLKASRVLVILDDVWNR 263 (780)
Q Consensus 244 l~~~L~~kr~LlVlDdv~~~ 263 (780)
+...+..++-++++|+-...
T Consensus 82 laral~~~p~lllLDEPts~ 101 (177)
T cd03222 82 IAAALLRNATFYLFDEPSAY 101 (177)
T ss_pred HHHHHhcCCCEEEEECCccc
Confidence 66667778889999987554
No 380
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.84 E-value=0.034 Score=54.58 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=26.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccC
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDK 200 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~ 200 (780)
+...|.++||+|.||||..+.++.+...+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~ 47 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKK 47 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhcc
Confidence 456788999999999999999999987663
No 381
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.77 Score=44.97 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=39.6
Q ss_pred CCccccCCchHHHHHHHHHHc-------------cCCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 148 RGYEQFESRMPTFQDIMEALK-------------DDNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
..+.++-|-++.++++++.+. -...+-|..+|++|.|||-+|+..+....
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 446677788999999999875 12356788999999999999998876543
No 382
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.83 E-value=0.039 Score=54.23 Aligned_cols=154 Identities=21% Similarity=0.290 Sum_probs=98.5
Q ss_pred CCCCccEEEecCCCCC-----CCCccccCCCCCCEEEccCccCCC------------cccccccCCCcEEEeecCCCC-c
Q 037947 556 GVPSLQVLSLNGFHFP-----SLPSTLGCLINLQTLSFECCVLGD------------VATVGALKKLVILSFRNSHIE-Q 617 (780)
Q Consensus 556 ~l~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~~~~------------~~~i~~l~~L~~L~l~~~~l~-~ 617 (780)
.+..+..++|+||.|. .+-..|.+-.+|+..+++.-..+. .+.+-++++|+..+|+.|-+. .
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 4788999999999986 244556677788888887643221 245778899999999998654 2
Q ss_pred cC----hhhcCCCCCCEEecCCCCCCcccCcccc-------------CCCcccceeeccCCCCccccccCCccchhhhcC
Q 037947 618 LP----EEIGQLTRLKLLDLSNCSKLKSIRPNVI-------------SNLPRLEELYMGNSFTHWEIEGQNNASLAELNQ 680 (780)
Q Consensus 618 lp----~~i~~l~~L~~L~l~~~~~l~~~~~~~l-------------~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~ 680 (780)
.| .-|.+-+.|.||.+++ +.+..+.-+.| .+-+.|++.....|.+. .|.....-..+..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~N-nGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle---ngs~~~~a~~l~s 183 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNN-NGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE---NGSKELSAALLES 183 (388)
T ss_pred cchHHHHHHhcCCCceeEEeec-CCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc---cCcHHHHHHHHHh
Confidence 33 3567778999999988 45544422222 24466777776666431 1111111223444
Q ss_pred CCCCCEEEeeccCCCCCCccc---------cccCccEEEEEecC
Q 037947 681 LSRLTTLEMHILDAQVMPREL---------FSVGLERYKIFLGD 715 (780)
Q Consensus 681 L~~L~~L~l~~~~~~~~~~~~---------~~~~L~~L~i~~~~ 715 (780)
-.+|+.+.+..|.+. |..+ .+.+|+.|++..+.
T Consensus 184 h~~lk~vki~qNgIr--pegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 184 HENLKEVKIQQNGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred hcCceeEEeeecCcC--cchhHHHHHHHHHHhCcceeeeccccc
Confidence 467888888877654 3322 46677788876654
No 383
>PRK04040 adenylate kinase; Provisional
Probab=94.82 E-value=0.026 Score=54.34 Aligned_cols=26 Identities=31% Similarity=0.627 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
..+|+|+|++|+||||+++.+.+...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35899999999999999999998764
No 384
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.81 E-value=0.034 Score=52.22 Aligned_cols=29 Identities=31% Similarity=0.448 Sum_probs=25.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
..++++|+|..|+|||||++.+......+
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 46799999999999999999999887654
No 385
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.81 E-value=0.12 Score=51.49 Aligned_cols=122 Identities=16% Similarity=0.174 Sum_probs=69.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc-----CCCHHHHHHHHHHHcCCCcC------CCCCHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-----KPDYKAIQNEIAGALGLFLG------EHEDVSE 239 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~~~~i~~~l~~~~~------~~~~~~~ 239 (780)
+..+++|+|.+|.||||+++.+..-.... .+.++..-.+ .....+-..++++.++.... .+-+-.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 45789999999999999999998765432 2233332111 12233445566666653321 1111222
Q ss_pred H-HHHHHHHhccCcEEEEEeCCCCcccc---ccccCCcccccccccCCCCCcEEEEEecchhHHh
Q 037947 240 R-AHLLRQRLKASRVLVILDDVWNRLDL---DAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLLY 300 (780)
Q Consensus 240 ~-~~~l~~~L~~kr~LlVlDdv~~~~~~---~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~~ 300 (780)
+ .-.+.+.|.-++-++|.|..-+.-+. ..+...+.. .....|...+..|.+-.++.
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~d-----lq~~~~lt~lFIsHDL~vv~ 174 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKD-----LQEELGLTYLFISHDLSVVR 174 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHH-----HHHHhCCeEEEEEEEHHhhh
Confidence 2 23477778889999999987555332 111111100 11234667788888877763
No 386
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.81 E-value=0.011 Score=34.38 Aligned_cols=21 Identities=14% Similarity=0.426 Sum_probs=13.9
Q ss_pred CCcEEEeecCCCCccChhhcC
Q 037947 604 KLVILSFRNSHIEQLPEEIGQ 624 (780)
Q Consensus 604 ~L~~L~l~~~~l~~lp~~i~~ 624 (780)
+|++|++++|.++.+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777777777766544
No 387
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.80 E-value=0.061 Score=51.06 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
...+++|+|+.|.|||||.+.++.-..
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 457899999999999999999987643
No 388
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.80 E-value=0.092 Score=59.33 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=44.7
Q ss_pred ccccCCchHHHHHHHHHHc--cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC
Q 037947 150 YEQFESRMPTFQDIMEALK--DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK 213 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 213 (780)
...++|+...++++.+.+. .....-|.|+|..|+|||++|+.+++..... -...+.|+++.-
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~ 249 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAAL 249 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccC
Confidence 4568899888888888776 3444568899999999999999999865422 123455555543
No 389
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.77 E-value=0.058 Score=48.18 Aligned_cols=40 Identities=28% Similarity=0.266 Sum_probs=29.4
Q ss_pred HHHHHHHHHcc--CCccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 159 TFQDIMEALKD--DNINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 159 ~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
+.+++-+.|.. ....+|.+.|.-|+||||+++.+.+....
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 34444444432 34568999999999999999999998653
No 390
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.75 E-value=0.23 Score=54.09 Aligned_cols=90 Identities=18% Similarity=0.294 Sum_probs=59.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCC-CHHHHHHHHHHHcCCC-------cCCCCCHH----
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKP-DYKAIQNEIAGALGLF-------LGEHEDVS---- 238 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 238 (780)
+...++|.|.+|+|||||+.++........ -+.++++-+++.. .+.++.+++...-... ..+.+ ..
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p-~~~r~~ 220 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEP-PGARLR 220 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCC-HHHHHH
Confidence 446789999999999999999988765432 2467777777654 4667777776532211 11111 11
Q ss_pred --HHHHHHHHHh---ccCcEEEEEeCCCC
Q 037947 239 --ERAHLLRQRL---KASRVLVILDDVWN 262 (780)
Q Consensus 239 --~~~~~l~~~L---~~kr~LlVlDdv~~ 262 (780)
...-.+.+++ ++++.|+++||+-.
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR 249 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFR 249 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHH
Confidence 2233466666 66999999999843
No 391
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.75 E-value=0.067 Score=50.88 Aligned_cols=116 Identities=16% Similarity=0.215 Sum_probs=59.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc--CCCHHHHHHHHHHHcCCCcCC------------CCC
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ--KPDYKAIQNEIAGALGLFLGE------------HED 236 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~~~~i~~~l~~~~~~------------~~~ 236 (780)
...+++|+|+.|.|||||.+.++..... ..+.+++.-.. ..+...... .++..... -+.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~~~~~~~~~----~i~~~~q~~~~~~~tv~~~lLS~ 99 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRP---TSGRVRLDGADISQWDPNELGD----HVGYLPQDDELFSGSIAENILSG 99 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCC---CCCeEEECCEEcccCCHHHHHh----heEEECCCCccccCcHHHHCcCH
Confidence 4568999999999999999999875432 23333332111 111111111 11110000 010
Q ss_pred HHHHHHHHHHHhccCcEEEEEeCCCCcccccc---ccCCcccccccccCCCCCcEEEEEecchhHH
Q 037947 237 VSERAHLLRQRLKASRVLVILDDVWNRLDLDA---VGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL 299 (780)
Q Consensus 237 ~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~---l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~ 299 (780)
-+...-.+...+..++-++++|+....-+... +...+ ..+ ...|..||++|.+....
T Consensus 100 G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l----~~~--~~~~~tii~~sh~~~~~ 159 (173)
T cd03246 100 GQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAI----AAL--KAAGATRIVIAHRPETL 159 (173)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHH----HHH--HhCCCEEEEEeCCHHHH
Confidence 12222345556667778999999765533221 21111 111 12366788888877653
No 392
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.75 E-value=0.03 Score=53.25 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
....|.|+|++|+||||+|+.++....
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999998863
No 393
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.75 E-value=0.025 Score=55.91 Aligned_cols=121 Identities=20% Similarity=0.196 Sum_probs=58.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH-hccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcC---CCCCHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV-MEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLG---EHEDVSERAHLLRQ 246 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 246 (780)
..+++.|.|+.|.||||+.+.+.-.. ..+ -.+..|-.-.. -....+|...++.... ..+....-..++..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~--~G~~v~a~~~~----~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~ 103 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQ--IGSFVPASSAT----LSIFDSVLTRMGASDSIQHGMSTFMVELSETSH 103 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHh--CCCEEEcCceE----EeccceEEEEecCccccccccchHHHHHHHHHH
Confidence 45788999999999999999997732 211 11111211000 0001111111111100 11112233344445
Q ss_pred Hhc--cCcEEEEEeCCCCccc-cccccCCcccccccccCCCCCcEEEEEecchhHH
Q 037947 247 RLK--ASRVLVILDDVWNRLD-LDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL 299 (780)
Q Consensus 247 ~L~--~kr~LlVlDdv~~~~~-~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~ 299 (780)
.++ +++-|++||+...... .+.... .......+... .++.+|++|....++
T Consensus 104 il~~~~~~sLvllDE~~~gT~~~d~~~i-~~~il~~l~~~-~~~~~i~~TH~~~l~ 157 (222)
T cd03287 104 ILSNCTSRSLVILDELGRGTSTHDGIAI-AYATLHYLLEE-KKCLVLFVTHYPSLG 157 (222)
T ss_pred HHHhCCCCeEEEEccCCCCCChhhHHHH-HHHHHHHHHhc-cCCeEEEEcccHHHH
Confidence 554 4789999999854422 111100 00111122222 578899999998875
No 394
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.71 E-value=0.089 Score=56.20 Aligned_cols=48 Identities=21% Similarity=0.269 Sum_probs=36.4
Q ss_pred cccCCchHHHHHHHHHHccC--------------CccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 151 EQFESRMPTFQDIMEALKDD--------------NINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~~~--------------~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
..++|.++.++.+.-++... ..+-|.++|++|+|||++|+.+......
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35778887777776555421 2367899999999999999999988743
No 395
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.67 E-value=0.36 Score=51.17 Aligned_cols=101 Identities=21% Similarity=0.283 Sum_probs=57.3
Q ss_pred HHHHHHHHHHccC----CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc-CCCHHHHHHHHHHHcCCCcC
Q 037947 158 PTFQDIMEALKDD----NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-KPDYKAIQNEIAGALGLFLG 232 (780)
Q Consensus 158 ~~~~~l~~~L~~~----~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~ 232 (780)
+....+..++.++ +.++|+++|+.|+||||-...++.+..-...=..+..++... .....+-++..++-++.+..
T Consensus 185 ~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 185 EKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred HHHHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE
Confidence 3444555555444 478999999999999964444444443111123466666543 23455566666777777665
Q ss_pred CCCCHHHHHHHHHHHhccCcEEEEEeCC
Q 037947 233 EHEDVSERAHLLRQRLKASRVLVILDDV 260 (780)
Q Consensus 233 ~~~~~~~~~~~l~~~L~~kr~LlVlDdv 260 (780)
...+..+....+.. +++. =+|.+|-+
T Consensus 265 vv~~~~el~~ai~~-l~~~-d~ILVDTa 290 (407)
T COG1419 265 VVYSPKELAEAIEA-LRDC-DVILVDTA 290 (407)
T ss_pred EecCHHHHHHHHHH-hhcC-CEEEEeCC
Confidence 55545555444433 2333 34555644
No 396
>PRK00625 shikimate kinase; Provisional
Probab=94.67 E-value=0.028 Score=53.17 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=21.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
.|.++|++|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988764
No 397
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.66 E-value=0.059 Score=57.00 Aligned_cols=47 Identities=15% Similarity=0.229 Sum_probs=36.6
Q ss_pred ccccCCchHHHHHHHHHHc--cCCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 150 YEQFESRMPTFQDIMEALK--DDNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.+.++|+...+.++.+.+. .....-|.|+|..|+||+++|+.++...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s 53 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLS 53 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhC
Confidence 3457898888888887765 2334568899999999999999998643
No 398
>PTZ00494 tuzin-like protein; Provisional
Probab=94.65 E-value=1.6 Score=46.66 Aligned_cols=167 Identities=16% Similarity=0.110 Sum_probs=99.8
Q ss_pred CCccccCCchHHHHHHHHHHc---cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALK---DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 224 (780)
.....++.|+.+-..+.+.|. ...++++++.|.-|.||++|.+........ ..++|.+... ++-++.|.
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDtLrsVV 439 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDTLRSVV 439 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cchHHHHH
Confidence 445668888887666666665 346789999999999999999988776533 3677888765 45678888
Q ss_pred HHcCCCcCCC-CCH----HHHHHHHHHHhccCcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhHH
Q 037947 225 GALGLFLGEH-EDV----SERAHLLRQRLKASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL 299 (780)
Q Consensus 225 ~~l~~~~~~~-~~~----~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~ 299 (780)
+.++.+.-+. .|. .+...+-.....++.-+||+-= .+...+..+.... -.|.....-|+|++--=-+...
T Consensus 440 KALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkL-REGssL~RVYnE~----vaLacDrRlCHvv~EVplESLT 514 (664)
T PTZ00494 440 RALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRL-REGSDLGRVYGEV----VSLVSDCQACHIVLAVPMKALT 514 (664)
T ss_pred HHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEe-ccCCcHHHHHHHH----HHHHccchhheeeeechHhhhc
Confidence 8888754332 111 2222333333445555666531 1111111110000 0113445566777744333321
Q ss_pred --hhhcCCcceEEcCCCChHHHHHHHHHhh
Q 037947 300 --YNEMNSQKNFLINVLSDQEAVQLFEKMS 327 (780)
Q Consensus 300 --~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 327 (780)
....+.-..|-+++++.++|.++..+..
T Consensus 515 ~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 515 PLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred hhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 1123444579999999999998877654
No 399
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=94.64 E-value=0.14 Score=53.79 Aligned_cols=36 Identities=17% Similarity=0.389 Sum_probs=26.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEc
Q 037947 175 IGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVS 211 (780)
Q Consensus 175 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 211 (780)
+++.|++|+||||+++.+.+.......+ .+.+++..
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~-~v~~~~~D 37 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGW-AVAVITYD 37 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCC-eEEEEccc
Confidence 6789999999999999999887633222 34444443
No 400
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.62 E-value=0.051 Score=55.57 Aligned_cols=54 Identities=20% Similarity=0.220 Sum_probs=42.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcC
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALG 228 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 228 (780)
+..+++.|+|.+|+|||++|.++....... ...++||+.... ..++.+...+ ++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~--~~~l~~~~~~-~g 74 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES--PEELLENARS-FG 74 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC--HHHHHHHHHH-cC
Confidence 456899999999999999999999887765 788999998875 4444444433 44
No 401
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=94.59 E-value=0.1 Score=53.02 Aligned_cols=25 Identities=40% Similarity=0.711 Sum_probs=22.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
.|.+.|++|+||||+|+.+......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999988754
No 402
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.59 E-value=0.054 Score=57.05 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=40.1
Q ss_pred ccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 150 YEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...++|.++.+..++-.+.++...-|.|.|..|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 45678999999888777777777778899999999999999998765
No 403
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.57 E-value=0.072 Score=60.94 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=59.1
Q ss_pred CccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcC
Q 037947 149 GYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALG 228 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 228 (780)
..+.++|.++.++.|...+... +.+.++|++|+||||+|+.+.+... ..+++..+|..- ...+...+++.++.+++
T Consensus 29 ~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~-~~~~~~~~~~~n-p~~~~~~~~~~v~~~~G 104 (637)
T PRK13765 29 LIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLP-KEELQDILVYPN-PEDPNNPKIRTVPAGKG 104 (637)
T ss_pred cHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcC-hHhHHHheEeeC-CCcchHHHHHHHHHhcC
Confidence 3456889988888887776654 4689999999999999999988753 334677788655 44477888888887776
Q ss_pred CC
Q 037947 229 LF 230 (780)
Q Consensus 229 ~~ 230 (780)
..
T Consensus 105 ~~ 106 (637)
T PRK13765 105 KQ 106 (637)
T ss_pred HH
Confidence 54
No 404
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.55 E-value=0.058 Score=54.93 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=65.7
Q ss_pred HHHHHHHHc-cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCc----CCC
Q 037947 160 FQDIMEALK-DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFL----GEH 234 (780)
Q Consensus 160 ~~~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~----~~~ 234 (780)
.+.++..+. ..+..-++|+|+.|.|||||.+.+....... .+.+++.-.+-..+ +-..++......-. ...
T Consensus 98 ~~~~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~~---~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r 173 (270)
T TIGR02858 98 ADKLLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARILSTG---ISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIR 173 (270)
T ss_pred HHHHHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCCC---CceEEECCEEeecc-hhHHHHHHHhccccccccccc
Confidence 344444444 3345689999999999999999998766432 23333321111001 11123322221100 000
Q ss_pred C---CHHHHHHHHHHHhc-cCcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhH
Q 037947 235 E---DVSERAHLLRQRLK-ASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDL 298 (780)
Q Consensus 235 ~---~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v 298 (780)
. +.......+...+. -.+-++++|.+...+.+..+...+ ..|..||+||....+
T Consensus 174 ~~v~~~~~k~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~----------~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 174 TDVLDGCPKAEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL----------HAGVSIIATAHGRDV 231 (270)
T ss_pred ccccccchHHHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH----------hCCCEEEEEechhHH
Confidence 0 01111222333333 478899999987665554443222 247789999987655
No 405
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=94.54 E-value=0.17 Score=49.09 Aligned_cols=27 Identities=37% Similarity=0.474 Sum_probs=24.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
..|+|.|..|+||||+++.+.+.....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~~ 30 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQEN 30 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 579999999999999999999887654
No 406
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.53 E-value=0.027 Score=54.21 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+|.|+|++|+||||+|+.+....
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998865
No 407
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.50 E-value=0.15 Score=55.11 Aligned_cols=87 Identities=23% Similarity=0.357 Sum_probs=54.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCC-CHHHHHHHHHHHcCCC-------cCCCCCHH----
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKP-DYKAIQNEIAGALGLF-------LGEHEDVS---- 238 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 238 (780)
....++|+|..|+|||||++.+.... ..+.++++-+++.. .+.++..+++..-+.. ..+++ ..
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p-~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTS-PLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCC-HHHHHH
Confidence 45679999999999999999998632 23566667776654 4566666655432211 11111 11
Q ss_pred --HHHHHHHHHh--ccCcEEEEEeCCCC
Q 037947 239 --ERAHLLRQRL--KASRVLVILDDVWN 262 (780)
Q Consensus 239 --~~~~~l~~~L--~~kr~LlVlDdv~~ 262 (780)
...-.+.+++ ++++.|+++||+-.
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~DslTR 263 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSLTR 263 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcChHH
Confidence 1222355555 57999999999844
No 408
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.50 E-value=0.046 Score=57.57 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=43.5
Q ss_pred CccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 149 GYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
+...++|-++.+..|+..+.+++..-|.|.|..|+||||+|+.+++-...
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~ 64 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPE 64 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 45678999999999988888888888889999999999999999887643
No 409
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.50 E-value=0.026 Score=55.05 Aligned_cols=23 Identities=39% Similarity=0.713 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+|+|.|++|+||||+|+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998865
No 410
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.49 E-value=0.15 Score=57.04 Aligned_cols=85 Identities=13% Similarity=0.269 Sum_probs=54.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcC---------------CCC
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLG---------------EHE 235 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------------~~~ 235 (780)
...++.|.|++|+|||||+.++......+ -+.+++++..+ +..++...+ +.++.... ...
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 45799999999999999999998877544 35577776655 445555553 44443211 111
Q ss_pred CHHHHHHHHHHHhcc-CcEEEEEeCC
Q 037947 236 DVSERAHLLRQRLKA-SRVLVILDDV 260 (780)
Q Consensus 236 ~~~~~~~~l~~~L~~-kr~LlVlDdv 260 (780)
..++....+.+.+.. +.-.+|+|.+
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi 362 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSL 362 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 235556666666654 4457778866
No 411
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.48 E-value=0.029 Score=53.70 Aligned_cols=23 Identities=43% Similarity=0.712 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 412
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.46 E-value=0.19 Score=53.91 Aligned_cols=82 Identities=28% Similarity=0.327 Sum_probs=50.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCC-----CCCHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGE-----HEDVSERAHLLRQ 246 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 246 (780)
..++.|.|.+|+|||||+..++...... -..++|++.... ...+ ..-+..++..... ..+.+. +.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~----I~~ 152 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLED----ILA 152 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHH----HHH
Confidence 4689999999999999999998876543 346778876543 3332 2223445432211 112233 333
Q ss_pred Hhc-cCcEEEEEeCCCC
Q 037947 247 RLK-ASRVLVILDDVWN 262 (780)
Q Consensus 247 ~L~-~kr~LlVlDdv~~ 262 (780)
.+. .+.-++|+|.+..
T Consensus 153 ~i~~~~~~lVVIDSIq~ 169 (372)
T cd01121 153 SIEELKPDLVIIDSIQT 169 (372)
T ss_pred HHHhcCCcEEEEcchHH
Confidence 333 3666899998743
No 413
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.45 E-value=0.1 Score=56.58 Aligned_cols=46 Identities=22% Similarity=0.196 Sum_probs=34.6
Q ss_pred cccCCchHHHHHHHHHHc-------cC---------CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 151 EQFESRMPTFQDIMEALK-------DD---------NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~-------~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..++|.+..++.+...+. .. ...-|.++|++|+|||++|+.++...
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l 132 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL 132 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh
Confidence 357898888887755542 10 12568999999999999999998765
No 414
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=94.44 E-value=0.062 Score=56.06 Aligned_cols=47 Identities=21% Similarity=0.325 Sum_probs=35.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQN 221 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 221 (780)
+++.+.|.||+||||+|...+-....++ ..+.-++.....++.+++.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~l~ 48 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDVLG 48 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHHHT
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHHhC
Confidence 6899999999999999999888776653 3466667666666555544
No 415
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.44 E-value=0.046 Score=52.23 Aligned_cols=25 Identities=40% Similarity=0.659 Sum_probs=22.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
+|+|.|.+|+||||||+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988753
No 416
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.44 E-value=0.021 Score=55.86 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
.+++|.|+.|.||||+.+.+...
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 68999999999999999999843
No 417
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.43 E-value=0.035 Score=53.16 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
.+++|+|++|+||||+++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988753
No 418
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.38 E-value=0.82 Score=46.87 Aligned_cols=39 Identities=10% Similarity=0.276 Sum_probs=30.1
Q ss_pred HHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 159 TFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 159 ~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
.-+.+...+..+++ ....++|+.|+||+++|..++...-
T Consensus 5 ~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~ll 44 (290)
T PRK05917 5 AWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLIL 44 (290)
T ss_pred HHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHh
Confidence 34566667766554 5677999999999999999987763
No 419
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=94.35 E-value=0.15 Score=48.06 Aligned_cols=79 Identities=22% Similarity=0.187 Sum_probs=46.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc--Cc
Q 037947 175 IGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA--SR 252 (780)
Q Consensus 175 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~--kr 252 (780)
+.|.|.+|+|||++|.++... ....++++.-...++. ++.+.|....... +......+....+.+.+.. +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R-~~~w~t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRR-PAHWRTIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhC-CCCceEeecHHHHHHHHHhcCCC
Confidence 679999999999999999765 1346777777776654 3444444322222 1111122233344444432 23
Q ss_pred EEEEEeCC
Q 037947 253 VLVILDDV 260 (780)
Q Consensus 253 ~LlVlDdv 260 (780)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 47999987
No 420
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=94.34 E-value=0.1 Score=56.23 Aligned_cols=41 Identities=22% Similarity=0.384 Sum_probs=33.1
Q ss_pred HHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 159 TFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 159 ~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
..+.+++.+.......+.|.|+||+|||+|.+.+.+..+..
T Consensus 9 ~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~ 49 (364)
T PF05970_consen 9 VFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSR 49 (364)
T ss_pred HHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccc
Confidence 34556666666677889999999999999999999887653
No 421
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.34 E-value=0.14 Score=50.86 Aligned_cols=176 Identities=17% Similarity=0.177 Sum_probs=80.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHh--ccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcC---CCCCHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVM--EDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLG---EHEDVSERAHLLR 245 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 245 (780)
+.+++.|.|+.|.||||+.+.+..-.- .-.. +|.+... .......++..++.... ..+........+.
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~-----~vpa~~~--~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a 101 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGC-----FVPCDSA--DIPIVDCILARVGASDSQLKGVSTFMAEMLETA 101 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCC-----CcCcccE--EEeccceeEeeeccccchhcCcChHHHHHHHHH
Confidence 467899999999999999998875321 1111 2211110 00012222222222111 1111233333444
Q ss_pred HHh--ccCcEEEEEeCCC---CccccccccCCcccccccccCCCCCcEEEEEecchhHHh--hhcCCcceEEcCCCChH-
Q 037947 246 QRL--KASRVLVILDDVW---NRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLLY--NEMNSQKNFLINVLSDQ- 317 (780)
Q Consensus 246 ~~L--~~kr~LlVlDdv~---~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~~--~~~~~~~~~~l~~L~~~- 317 (780)
..+ ...+-|++||... +..+-..+... +...+.. ..|+.+|+||....+.. .........++.....+
T Consensus 102 ~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~---il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~ 177 (222)
T cd03285 102 AILKSATENSLIIIDELGRGTSTYDGFGLAWA---IAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDA 177 (222)
T ss_pred HHHHhCCCCeEEEEecCcCCCChHHHHHHHHH---HHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCC
Confidence 444 3578899999983 33222111100 1111122 34678999998765541 11111112222211111
Q ss_pred -HHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHHh
Q 037947 318 -EAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATALR 362 (780)
Q Consensus 318 -~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~ 362 (780)
+... |..+....... ...+-.+++.+ |+|-.+..-|..+.
T Consensus 178 ~~~~~-~~Y~l~~G~~~---~s~a~~~a~~~-g~p~~vi~~A~~~~ 218 (222)
T cd03285 178 SRTLT-MLYKVEKGACD---QSFGIHVAELA-NFPKEVIEMAKQKA 218 (222)
T ss_pred CCcEe-EEEEEeeCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHH
Confidence 1111 11111111111 24567777766 89988887776654
No 422
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.34 E-value=0.041 Score=52.45 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.++|.+.|++|+||||+|+.+....
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3689999999999999999998775
No 423
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.34 E-value=0.086 Score=54.02 Aligned_cols=54 Identities=28% Similarity=0.262 Sum_probs=41.8
Q ss_pred ccccCCchHHHH---HHHHHHccC--CccEEEEEcCCCChHHHHHHHHHHHHhccCCCC
Q 037947 150 YEQFESRMPTFQ---DIMEALKDD--NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFD 203 (780)
Q Consensus 150 ~~~~~gr~~~~~---~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 203 (780)
.++|+|..+..+ -+++++.+. ..+.|.++|++|.|||+||-.+.+..-..-.|.
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~ 96 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFV 96 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCce
Confidence 567888765544 356666644 358999999999999999999999987665663
No 424
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.31 E-value=0.19 Score=54.54 Aligned_cols=88 Identities=20% Similarity=0.328 Sum_probs=54.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCC-CHHHHHHHHHHHcCCC-------cCCCCCH-----
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKP-DYKAIQNEIAGALGLF-------LGEHEDV----- 237 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 237 (780)
+...++|+|..|+|||||++.+++... .+.++++-+++.. .+.++..+.+..-+.. ..+++..
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 457789999999999999999987653 3455666676654 4556665554432211 0111101
Q ss_pred HHHHHHHHHHh--ccCcEEEEEeCCCC
Q 037947 238 SERAHLLRQRL--KASRVLVILDDVWN 262 (780)
Q Consensus 238 ~~~~~~l~~~L--~~kr~LlVlDdv~~ 262 (780)
....-.+.+++ ++++.|+++||+-.
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~DslTr 259 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSVTR 259 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCcHH
Confidence 11223355555 46999999999843
No 425
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.30 E-value=0.17 Score=55.94 Aligned_cols=91 Identities=22% Similarity=0.246 Sum_probs=52.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeE-EEEEEccCCC-HHHHHHHHHHHcCCCcCCCC-C----HHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEV-VMVVVSQKPD-YKAIQNEIAGALGLFLGEHE-D----VSERAHL 243 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~-~----~~~~~~~ 243 (780)
....+.|+|++|+|||||++.+.+..... +-++. +.+-|.+.+. +.++.+.+-..+-....+.+ . .....-.
T Consensus 415 kGQR~LIvgpp~aGKTtLL~~IAn~i~~n-~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 415 KGQRGLIVSPPKAGKTTILQNIANAITTN-NPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred cCCEeEEeCCCCCCHHHHHHHHHHHHhhc-CCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 44568999999999999999999876432 33443 3556666543 44443333111111111111 0 1122233
Q ss_pred HHHHh--ccCcEEEEEeCCCC
Q 037947 244 LRQRL--KASRVLVILDDVWN 262 (780)
Q Consensus 244 l~~~L--~~kr~LlVlDdv~~ 262 (780)
+.+++ .++.+||++|++-.
T Consensus 494 ~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHcCCCEEEEEeCchH
Confidence 44455 56999999999843
No 426
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.29 E-value=0.058 Score=51.87 Aligned_cols=36 Identities=31% Similarity=0.425 Sum_probs=28.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVV 209 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 209 (780)
.++|.|+|+.|+|||||++.+....... |...+..+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~--~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDK--FGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTT--EEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccc--cccceeec
Confidence 4789999999999999999999876543 64444443
No 427
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.28 E-value=0.09 Score=54.76 Aligned_cols=49 Identities=24% Similarity=0.376 Sum_probs=39.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNE 222 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 222 (780)
.+++.+.|.||+||||+|...+-.....+ ..++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999999877776653 45888888888787776665
No 428
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.28 E-value=0.48 Score=49.16 Aligned_cols=29 Identities=34% Similarity=0.454 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
..+-|.++||+|.|||-||+.++.+....
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~ 154 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGAN 154 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCC
Confidence 35678999999999999999999876443
No 429
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.27 E-value=0.14 Score=49.95 Aligned_cols=122 Identities=14% Similarity=0.066 Sum_probs=57.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCC---CHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHE---DVSERAHLLRQR 247 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~---~~~~~~~~l~~~ 247 (780)
..+++.|.|+.|.||||+.+.+.--..-. ..-.+|.+.. ..+ .+...|...++....... ....-..++...
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~~~~la---~~G~~vpa~~-~~l-~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~i 102 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIALLAIMA---QIGCFVPAEY-ATL-PIFNRLLSRLSNDDSMERNLSTFASEMSETAYI 102 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHH---HcCCCcchhh-cCc-cChhheeEecCCccccchhhhHHHHHHHHHHHH
Confidence 34789999999999999999886543111 0011111111 111 222333333332211110 111111223333
Q ss_pred h--ccCcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhHH
Q 037947 248 L--KASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL 299 (780)
Q Consensus 248 L--~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~ 299 (780)
+ ..++-|+++|+.....+..+-..........+. ..++.+|++|.....+
T Consensus 103 l~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~ 154 (204)
T cd03282 103 LDYADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIA 154 (204)
T ss_pred HHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHH
Confidence 3 357789999998544221110000001111112 2378899999988875
No 430
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.27 E-value=0.083 Score=52.87 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=17.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+..|.|++|.||||++..+....
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 78899999999998777776665
No 431
>PF13479 AAA_24: AAA domain
Probab=94.25 E-value=0.14 Score=50.51 Aligned_cols=31 Identities=32% Similarity=0.404 Sum_probs=24.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK 213 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 213 (780)
-.+.|+|.+|+||||+|..+ +..+++.+...
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 35789999999999999965 55667766655
No 432
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.23 E-value=0.05 Score=47.79 Aligned_cols=25 Identities=44% Similarity=0.581 Sum_probs=17.9
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 175 IGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 175 v~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
|.|+|.+|+||||+|+.++......
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~ 26 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLS 26 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCc
Confidence 6799999999999999999876543
No 433
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.23 E-value=0.017 Score=33.66 Aligned_cols=20 Identities=35% Similarity=0.629 Sum_probs=12.5
Q ss_pred ccEEEecCCCCCCCCccccC
Q 037947 560 LQVLSLNGFHFPSLPSTLGC 579 (780)
Q Consensus 560 Lr~L~l~~~~~~~lp~~i~~ 579 (780)
|++||+++|.++.+|+++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 56666666666666655543
No 434
>PRK06217 hypothetical protein; Validated
Probab=94.19 E-value=0.039 Score=53.06 Aligned_cols=24 Identities=42% Similarity=0.479 Sum_probs=21.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
.|.|.|++|+||||+|+.+.....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999998764
No 435
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.17 E-value=0.095 Score=46.75 Aligned_cols=35 Identities=26% Similarity=0.341 Sum_probs=26.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK 213 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 213 (780)
.+-|.|.|.+|+||||+|..++.... .-|+++|+-
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~ 41 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDL 41 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhH
Confidence 35588999999999999999986543 235666653
No 436
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.15 E-value=0.039 Score=50.76 Aligned_cols=24 Identities=38% Similarity=0.613 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
+|.|.|++|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998753
No 437
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.14 E-value=0.41 Score=52.07 Aligned_cols=91 Identities=16% Similarity=0.267 Sum_probs=59.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCC-CHHHHHHHHHHHcCCC-------cCCCCCHH----
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKP-DYKAIQNEIAGALGLF-------LGEHEDVS---- 238 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 238 (780)
+...++|.|.+|+|||||+.++....... +-..++++-+++.. .+.++..++...-... ..+.+ ..
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p-~~~R~~ 219 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEP-PGARMR 219 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCC-HHHHHH
Confidence 45678999999999999999998876543 23467788787654 4677777775432111 11111 11
Q ss_pred --HHHHHHHHHh---ccCcEEEEEeCCCCc
Q 037947 239 --ERAHLLRQRL---KASRVLVILDDVWNR 263 (780)
Q Consensus 239 --~~~~~l~~~L---~~kr~LlVlDdv~~~ 263 (780)
...-.+.+++ ++++.|+++||+-.-
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 1233466666 468999999998443
No 438
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.14 E-value=0.32 Score=52.87 Aligned_cols=92 Identities=16% Similarity=0.249 Sum_probs=59.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCC-CHHHHHHHHHHHcCCC-------cCCCCCH-----
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKP-DYKAIQNEIAGALGLF-------LGEHEDV----- 237 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~-------~~~~~~~----- 237 (780)
+...++|.|.+|+|||+|+.++.+..... +-+.++|+-++... .+.++.+++...-... ..+++..
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~~-~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVGQ-HQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 44678999999999999999998886532 34678888887765 4566666665432111 1111101
Q ss_pred HHHHHHHHHHhc---cCcEEEEEeCCCCc
Q 037947 238 SERAHLLRQRLK---ASRVLVILDDVWNR 263 (780)
Q Consensus 238 ~~~~~~l~~~L~---~kr~LlVlDdv~~~ 263 (780)
....-.+.++++ +++.|+++||+-.-
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 122334666664 59999999998443
No 439
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.14 E-value=0.37 Score=49.07 Aligned_cols=90 Identities=18% Similarity=0.244 Sum_probs=51.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCC-CHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKP-DYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLK 249 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 249 (780)
+..+++++|.+|+||||++..+......+. ..+.+++..... ...+-++...+.++.......+.....+.+. .++
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~--~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~-~l~ 150 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKK--KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALT-YFK 150 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHH-HHH
Confidence 457999999999999999999987764331 245566554321 1222223334444433332233444433333 333
Q ss_pred c--CcEEEEEeCCCCc
Q 037947 250 A--SRVLVILDDVWNR 263 (780)
Q Consensus 250 ~--kr~LlVlDdv~~~ 263 (780)
. +.=++++|.....
T Consensus 151 ~~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 151 EEARVDYILIDTAGKN 166 (270)
T ss_pred hcCCCCEEEEECCCCC
Confidence 2 3458889987443
No 440
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.12 E-value=0.42 Score=49.20 Aligned_cols=53 Identities=19% Similarity=0.195 Sum_probs=37.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
...++.|.|.+|+||||++..++.....+ +-..++|++... +..++...+...
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEccc--CHHHHHHHHHHH
Confidence 34688999999999999999998776433 124578887765 345566655544
No 441
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.08 E-value=0.15 Score=55.43 Aligned_cols=89 Identities=22% Similarity=0.265 Sum_probs=50.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHc-----CCCcCCCCCHH------H
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGAL-----GLFLGEHEDVS------E 239 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l-----~~~~~~~~~~~------~ 239 (780)
....++|+|..|+|||||++.+...... ...+++..-.+..++.++....+... ..-...+.... .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 3467999999999999999988754321 22344443334445555554444332 11111111111 1
Q ss_pred HHHHHHHHh--ccCcEEEEEeCCCC
Q 037947 240 RAHLLRQRL--KASRVLVILDDVWN 262 (780)
Q Consensus 240 ~~~~l~~~L--~~kr~LlVlDdv~~ 262 (780)
..-.+.+++ +++..|+++||+-.
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr 265 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTR 265 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHH
Confidence 222344554 46999999999844
No 442
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.07 E-value=0.12 Score=59.96 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+....|+|+|.+|+|||||++.+..-.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455789999999999999999996544
No 443
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.05 E-value=0.16 Score=48.92 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=25.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
....+|.|.|.+|+||||+|+.+......
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45679999999999999999999987653
No 444
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.05 E-value=0.21 Score=50.13 Aligned_cols=96 Identities=21% Similarity=0.260 Sum_probs=56.5
Q ss_pred ccCCchHHHHHHHHHHc-------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHH
Q 037947 152 QFESRMPTFQDIMEALK-------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~-------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 224 (780)
.++|..-..+.++..+. ..+.-|++.+|..|+||..+++.+++.......- ........
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~--------------S~~V~~fv 148 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLR--------------SPFVHHFV 148 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhcccc--------------chhHHHhh
Confidence 35566666666666665 2345699999999999999999999886433110 00111111
Q ss_pred HHcCCCcCCCCCH----HHHHHHHHHHhcc-CcEEEEEeCCCCc
Q 037947 225 GALGLFLGEHEDV----SERAHLLRQRLKA-SRVLVILDDVWNR 263 (780)
Q Consensus 225 ~~l~~~~~~~~~~----~~~~~~l~~~L~~-kr~LlVlDdv~~~ 263 (780)
..+. .+..... +++...++..++. +|-|+|+|+++..
T Consensus 149 at~h--FP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 149 ATLH--FPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred hhcc--CCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 1111 1111112 3344444444444 8999999999776
No 445
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.04 E-value=0.081 Score=48.93 Aligned_cols=35 Identities=26% Similarity=0.474 Sum_probs=28.4
Q ss_pred HHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 159 TFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 159 ~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.+++|.+++.+ ++++++|.+|+|||||+..+....
T Consensus 25 g~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 25 GIEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp THHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CHHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 45677777644 789999999999999999987653
No 446
>PRK14530 adenylate kinase; Provisional
Probab=94.03 E-value=0.048 Score=53.96 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+.|.|+|++|+||||+|+.++...
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998876
No 447
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.99 E-value=0.04 Score=50.96 Aligned_cols=23 Identities=39% Similarity=0.707 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
++.+.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 37899999999999999998763
No 448
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=93.98 E-value=0.085 Score=48.66 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=27.7
Q ss_pred ccCCccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 168 KDDNINVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 168 ~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
..++..+|-+.|.+|.||||+|..++......
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 35567799999999999999999999988654
No 449
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.97 E-value=0.059 Score=52.94 Aligned_cols=31 Identities=26% Similarity=0.457 Sum_probs=26.9
Q ss_pred HccCCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 167 LKDDNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 167 L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
+...++++|+++|+.|+|||||..++.+...
T Consensus 17 ~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 17 LDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456899999999999999999999988753
No 450
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.96 E-value=0.056 Score=49.22 Aligned_cols=46 Identities=35% Similarity=0.470 Sum_probs=33.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCC
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGL 229 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 229 (780)
.++|+|+|.+|+||||+.+.+.... +. +. -.+.-++.-+++...+.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~--~~---------ivNyG~~Mle~A~k~gl 49 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VK--HK---------IVNYGDLMLEIAKKKGL 49 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hh--ce---------eeeHhHHHHHHHHHhCC
Confidence 5799999999999999999887766 11 11 12455667777766654
No 451
>PRK06851 hypothetical protein; Provisional
Probab=93.96 E-value=0.67 Score=49.20 Aligned_cols=44 Identities=27% Similarity=0.294 Sum_probs=33.5
Q ss_pred cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC
Q 037947 169 DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK 213 (780)
Q Consensus 169 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 213 (780)
.+--+++.|.|.+|+|||||++.++.....++ ++..++-|.+.+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~G-~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEERG-FDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhCC-CeEEEEeCCCCC
Confidence 44467899999999999999999999986653 555555554444
No 452
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.95 E-value=0.053 Score=53.23 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...+|+|+|++|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998864
No 453
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.95 E-value=0.059 Score=49.82 Aligned_cols=29 Identities=31% Similarity=0.642 Sum_probs=26.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccC
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDK 200 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~ 200 (780)
.++++|+|+.|+|||||+..+....+.++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 47899999999999999999999988764
No 454
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.92 E-value=0.18 Score=48.05 Aligned_cols=123 Identities=15% Similarity=0.125 Sum_probs=66.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc---CCCHHHHHHHHH--H--HcCCC--cCCCCC-----
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ---KPDYKAIQNEIA--G--ALGLF--LGEHED----- 236 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~~~~i~--~--~l~~~--~~~~~~----- 236 (780)
....|-|+|..|-||||.|..+.-+....+. .+..+..-+ .......+..+- . +.+.. ......
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~--~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGK--KVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCC--eEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 3468999999999999999999887765432 333333332 234444443320 0 01111 011110
Q ss_pred -HHHHHHHHHHHhccCcE-EEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchh
Q 037947 237 -VSERAHLLRQRLKASRV-LVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKD 297 (780)
Q Consensus 237 -~~~~~~~l~~~L~~kr~-LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~ 297 (780)
..+.....++.+...+| ++|||.+-..-.+.-+. ...+...|.....+..||+|-|+..
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~--~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLD--VEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCcc--HHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12233445555555555 99999985543322211 1112222255556778999999864
No 455
>PRK13949 shikimate kinase; Provisional
Probab=93.92 E-value=0.052 Score=51.32 Aligned_cols=25 Identities=44% Similarity=0.446 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
+-|.|+|++|+||||+++.+++...
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998764
No 456
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=93.90 E-value=0.13 Score=59.08 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=52.2
Q ss_pred ccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCC
Q 037947 150 YEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGL 229 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~ 229 (780)
...++|.++.++.+...+.... -+.++|++|+||||+|+.+.+..... .|...+++.- ...+..++++.+..+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n-~~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPN-PEDPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeC-CCCCchHHHHHHHHhhch
Confidence 3567888888877777666543 56699999999999999999876543 3433343322 223556667888777764
No 457
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.89 E-value=0.044 Score=52.49 Aligned_cols=24 Identities=46% Similarity=0.538 Sum_probs=21.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
++|+|+|+.|+||||||+.+....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 579999999999999999998743
No 458
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.85 E-value=0.17 Score=47.75 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=44.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCC---CCHHHHHHHHHHHhc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEH---EDVSERAHLLRQRLK 249 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~---~~~~~~~~~l~~~L~ 249 (780)
.++.|.|.+|+||||+|..+...... ..+++..... .-.+..+.|..........- +...++.+.+.....
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~ 75 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAA 75 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcC
Confidence 36899999999999999999876421 2344444333 33445555544333221111 111223333433333
Q ss_pred cCcEEEEEeCC
Q 037947 250 ASRVLVILDDV 260 (780)
Q Consensus 250 ~kr~LlVlDdv 260 (780)
+ .-++++|.+
T Consensus 76 ~-~~~VlID~L 85 (170)
T PRK05800 76 P-GRCVLVDCL 85 (170)
T ss_pred C-CCEEEehhH
Confidence 2 337888886
No 459
>PRK13947 shikimate kinase; Provisional
Probab=93.85 E-value=0.051 Score=51.56 Aligned_cols=24 Identities=42% Similarity=0.488 Sum_probs=21.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
-|.|+|++|+||||+|+.+.+...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 460
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.84 E-value=0.15 Score=54.06 Aligned_cols=64 Identities=19% Similarity=0.131 Sum_probs=47.2
Q ss_pred cCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHH
Q 037947 153 FESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEI 223 (780)
Q Consensus 153 ~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 223 (780)
++|+++....+...+..+ +-+.+.|++|+|||+||+.++..... ..++|.+.......++....
T Consensus 26 ~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l~~-----~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 26 VVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARALGL-----PFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHhCC-----CeEEEecCCCCCHHHhcCch
Confidence 678888887777666544 34889999999999999999988752 24566667666666655443
No 461
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.84 E-value=0.24 Score=51.45 Aligned_cols=62 Identities=21% Similarity=0.226 Sum_probs=42.2
Q ss_pred ccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHH
Q 037947 152 QFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQ 220 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~ 220 (780)
.++=..+....++.++..+ +-|.|.|++|+||||+|+.++...... .+.|+.+...+..++.
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~Dli 107 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDLV 107 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhcC
Confidence 3444455566677777543 459999999999999999999987532 2455666555544443
No 462
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=93.83 E-value=0.081 Score=55.61 Aligned_cols=49 Identities=20% Similarity=0.263 Sum_probs=38.8
Q ss_pred CCccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.+...++|.+..++.+.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 3456788999888887765554555568999999999999999997765
No 463
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.81 E-value=0.37 Score=50.36 Aligned_cols=89 Identities=21% Similarity=0.354 Sum_probs=52.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc-CCCHHHHHHHHHHHcCCC-------cCCCCCH----
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-KPDYKAIQNEIAGALGLF-------LGEHEDV---- 237 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~-------~~~~~~~---- 237 (780)
.....++|+|..|.|||||.+.+..... -+.....-++. ..++.++.......-+.. ..+++..
T Consensus 67 ~~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~ 142 (326)
T cd01136 67 GKGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVK 142 (326)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHH
Confidence 3456789999999999999998886543 23344444443 345666666555442211 1111101
Q ss_pred -HHHHHHHHHHh--ccCcEEEEEeCCCC
Q 037947 238 -SERAHLLRQRL--KASRVLVILDDVWN 262 (780)
Q Consensus 238 -~~~~~~l~~~L--~~kr~LlVlDdv~~ 262 (780)
....-.+.+++ +++..|+++||+-.
T Consensus 143 ~~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 143 AAYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 11222344444 47999999999743
No 464
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.81 E-value=0.14 Score=49.64 Aligned_cols=39 Identities=28% Similarity=0.373 Sum_probs=29.9
Q ss_pred HHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 161 QDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 161 ~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
.+.+..+...+-+++.|.|++|+||||+++.+.......
T Consensus 7 ~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 7 REAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 344444444556789999999999999999998877665
No 465
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.81 E-value=0.36 Score=50.61 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=25.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
+..+++++|++|+||||++..++......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999999887644
No 466
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.80 E-value=0.059 Score=50.02 Aligned_cols=35 Identities=23% Similarity=0.349 Sum_probs=27.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVV 209 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 209 (780)
|++|+|+.|+|||||+..+....+.+ .+...+.-+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~viK~ 35 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATIKH 35 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEec
Confidence 58899999999999999999988654 344444433
No 467
>PRK14527 adenylate kinase; Provisional
Probab=93.79 E-value=0.061 Score=52.11 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
...+|.|+|++|+||||+|+.+.+...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988764
No 468
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.78 E-value=0.05 Score=50.08 Aligned_cols=20 Identities=50% Similarity=0.703 Sum_probs=18.8
Q ss_pred EEEEEcCCCChHHHHHHHHH
Q 037947 174 VIGIYGIGGVGKTTLVKQVA 193 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~ 193 (780)
.|+|.|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999997
No 469
>PLN02924 thymidylate kinase
Probab=93.78 E-value=0.29 Score=48.37 Aligned_cols=53 Identities=9% Similarity=0.046 Sum_probs=35.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAG 225 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 225 (780)
...|+|-|..|+||||+|+.+.+....+. +....+-..+......+..++++.
T Consensus 16 g~~IviEGiDGsGKsTq~~~L~~~l~~~g-~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 16 GALIVLEGLDRSGKSTQCAKLVSFLKGLG-VAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcC-CCceeeeCCCCCChHHHHHHHHHh
Confidence 46899999999999999999999987653 443322222223334555555554
No 470
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=93.77 E-value=0.21 Score=49.13 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=20.0
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 037947 175 IGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 175 v~I~G~gGiGKTtLa~~v~~~~ 196 (780)
|.|.|++|+||||+|+.+....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999998765
No 471
>PRK15453 phosphoribulokinase; Provisional
Probab=93.75 E-value=0.43 Score=48.35 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=24.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
.+..+|+|.|.+|+||||+|+.+.+...
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567999999999999999999987654
No 472
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.75 E-value=0.17 Score=49.18 Aligned_cols=26 Identities=42% Similarity=0.576 Sum_probs=23.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
.+|+|.|+.|+||||+++.+.+....
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36899999999999999999998754
No 473
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.75 E-value=0.063 Score=52.79 Aligned_cols=182 Identities=14% Similarity=0.088 Sum_probs=112.7
Q ss_pred CCCCccEEEeccCccccccCch---hhcCCCCccEEEecCCCCC----CCCc-------cccCCCCCCEEEccCccCCC-
Q 037947 531 ECPKLKLFFLFSKKLSLVIPDL---FFEGVPSLQVLSLNGFHFP----SLPS-------TLGCLINLQTLSFECCVLGD- 595 (780)
Q Consensus 531 ~~~~L~~L~l~~~~~~~~~~~~---~~~~l~~Lr~L~l~~~~~~----~lp~-------~i~~l~~L~~L~L~~~~~~~- 595 (780)
.+..+..+++++|.+...-... .+.+-++|++.+++..... .+|+ .+-++++|+..+|+.|-+..
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 3567788999999886443222 2344578888888764322 2333 45578999999999998765
Q ss_pred -c----ccccccCCCcEEEeecCCCCccCh--------------hhcCCCCCCEEecCCCCCCcccCcc----ccCCCcc
Q 037947 596 -V----ATVGALKKLVILSFRNSHIEQLPE--------------EIGQLTRLKLLDLSNCSKLKSIRPN----VISNLPR 652 (780)
Q Consensus 596 -~----~~i~~l~~L~~L~l~~~~l~~lp~--------------~i~~l~~L~~L~l~~~~~l~~~~~~----~l~~l~~ 652 (780)
| .-|.+-..|.+|.+.+|.+..+.. ....-+.|+...... |++...+.. .+..-..
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr-NRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR-NRLENGSKELSAALLESHEN 186 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc-chhccCcHHHHHHHHHhhcC
Confidence 3 346777899999999997764321 233456788888777 566554322 1222246
Q ss_pred cceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCCCCCccc------cccCccEEEEEecC
Q 037947 653 LEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPREL------FSVGLERYKIFLGD 715 (780)
Q Consensus 653 L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~------~~~~L~~L~i~~~~ 715 (780)
|+++.+..|-+. ..|-..-.+..+..+.+|+.|++..|..+...+.. .-+.|+.|.+..|-
T Consensus 187 lk~vki~qNgIr--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 187 LKEVKIQQNGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred ceeEEeeecCcC--cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 888888776321 11111112334567789999999887644322221 22446777775543
No 474
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.74 E-value=0.12 Score=53.70 Aligned_cols=79 Identities=18% Similarity=0.288 Sum_probs=55.5
Q ss_pred cccCCchHHHHHHHHHHc------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEE-ccCC------CHH
Q 037947 151 EQFESRMPTFQDIMEALK------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVV-SQKP------DYK 217 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v-s~~~------~~~ 217 (780)
..|+|-++.++++++.+. +.+-+++.++||.|.||||||..+.+-...- .+|.-. ++.. =+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y-----~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY-----PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE-----EEEEecCCccccChhhhCCH
Confidence 468899999999999987 3456899999999999999999998877543 333321 1111 145
Q ss_pred HHHHHHHHHcCCCcCCC
Q 037947 218 AIQNEIAGALGLFLGEH 234 (780)
Q Consensus 218 ~~~~~i~~~l~~~~~~~ 234 (780)
++-..+.+.++......
T Consensus 136 ~~r~~~~~~~~~~i~g~ 152 (358)
T PF08298_consen 136 ELRREFEDELGIRIEGE 152 (358)
T ss_pred hHHHHHHHHhCcccCCC
Confidence 55566666666644433
No 475
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.73 E-value=0.061 Score=50.61 Aligned_cols=24 Identities=50% Similarity=0.606 Sum_probs=20.8
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhc
Q 037947 175 IGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 175 v~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
|.|.|.+|+|||||++.+.+..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998853
No 476
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.70 E-value=0.057 Score=51.86 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+.++|.|+|++|+|||||++.+....
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45789999999999999999998753
No 477
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.67 E-value=0.38 Score=52.65 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=55.0
Q ss_pred CccEEEEEcCCCChHHHHH-HHHHHHHhc-----cCCCCeEEEEEEccCCCHHHHHHHHHHHcCC-Cc-------CCCCC
Q 037947 171 NINVIGIYGIGGVGKTTLV-KQVARRVME-----DKLFDEVVMVVVSQKPDYKAIQNEIAGALGL-FL-------GEHED 236 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-~~-------~~~~~ 236 (780)
+...++|.|..|+|||+|| ..+.+.... .+.-+.++++-+++..+.-.-+.+.+++-+. .. .+++.
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 4467899999999999997 666666522 1234678888888876433224444444331 10 11110
Q ss_pred HH-----HHHHHHHHHh--ccCcEEEEEeCCCCc
Q 037947 237 VS-----ERAHLLRQRL--KASRVLVILDDVWNR 263 (780)
Q Consensus 237 ~~-----~~~~~l~~~L--~~kr~LlVlDdv~~~ 263 (780)
.. -..-.+.+++ +++..|+|+||+..-
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 11 1122344454 469999999998443
No 478
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=93.67 E-value=0.07 Score=52.68 Aligned_cols=27 Identities=37% Similarity=0.655 Sum_probs=23.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
++|+|.|-||+||||++..++......
T Consensus 1 ~~iav~gKGGvGKTt~~~nLA~~la~~ 27 (212)
T cd02117 1 RQIAIYGKGGIGKSTTSQNLSAALAEM 27 (212)
T ss_pred CEEEEECCCcCcHHHHHHHHHHHHHHC
Confidence 478999999999999999998887754
No 479
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.66 E-value=0.23 Score=49.88 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=22.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
+|+|.|.+|+||||+|+.+.......
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~ 26 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFARE 26 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999877543
No 480
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=93.64 E-value=0.065 Score=55.35 Aligned_cols=39 Identities=36% Similarity=0.552 Sum_probs=28.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK 213 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 213 (780)
+.|+|+|-||+||||+|..++.....++ + .++-|.....
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~-~VlliD~D~q 39 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-K-KVMIVGCDPK 39 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-C-eEEEEeCCCC
Confidence 4689999999999999999998887653 2 3444444433
No 481
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.62 E-value=0.061 Score=47.35 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=20.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHh
Q 037947 175 IGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 175 v~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999987653
No 482
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.61 E-value=0.066 Score=45.70 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVA 193 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~ 193 (780)
...++|+|++|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4679999999999999999976
No 483
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.60 E-value=0.062 Score=49.89 Aligned_cols=22 Identities=36% Similarity=0.570 Sum_probs=20.4
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 037947 175 IGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 175 v~I~G~gGiGKTtLa~~v~~~~ 196 (780)
|.|+|++|+||||+|+.+....
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998876
No 484
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.58 E-value=0.18 Score=53.99 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=37.0
Q ss_pred cccCCchHHHHHHHHHHcc--------------CCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 151 EQFESRMPTFQDIMEALKD--------------DNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~~--------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
..++|.++.++.+..++.. ...+-|.++|++|+|||++|+.+.....
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4577888888888777642 0136789999999999999999998764
No 485
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.58 E-value=0.052 Score=49.32 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.|+|+|+.|+|||||++.+....
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcC
Confidence 37899999999999999998764
No 486
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.57 E-value=0.056 Score=52.10 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.++.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997654
No 487
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.53 E-value=0.51 Score=59.23 Aligned_cols=28 Identities=29% Similarity=0.266 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
..+-|.++|++|+|||.||+.++.+..+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 3467889999999999999999988643
No 488
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.51 E-value=0.071 Score=51.61 Aligned_cols=25 Identities=40% Similarity=0.468 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..+|.|.|.+|+||||+|+.+....
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998874
No 489
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.50 E-value=0.15 Score=54.34 Aligned_cols=92 Identities=14% Similarity=0.192 Sum_probs=52.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA 250 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~ 250 (780)
....|.|.|+.|.||||+++.+.+..... ....++. +.+.... ..... ..+-.......+.....+.++..|..
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~--~~~~i~t-iEdp~E~--~~~~~-~~~i~q~evg~~~~~~~~~l~~~lr~ 194 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKN--AAGHIIT-IEDPIEY--VHRNK-RSLINQREVGLDTLSFANALRAALRE 194 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcC--CCCEEEE-EcCChhh--hccCc-cceEEccccCCCCcCHHHHHHHhhcc
Confidence 45789999999999999999988765322 3344442 3322111 00000 00000000011112345567778888
Q ss_pred CcEEEEEeCCCCcccccc
Q 037947 251 SRVLVILDDVWNRLDLDA 268 (780)
Q Consensus 251 kr~LlVlDdv~~~~~~~~ 268 (780)
.+=.|++|.+.+.+.+..
T Consensus 195 ~pd~i~vgEird~~~~~~ 212 (343)
T TIGR01420 195 DPDVILIGEMRDLETVEL 212 (343)
T ss_pred CCCEEEEeCCCCHHHHHH
Confidence 999999999987765543
No 490
>COG4240 Predicted kinase [General function prediction only]
Probab=93.49 E-value=0.63 Score=44.80 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=52.8
Q ss_pred cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCC-----CcCCCCCHHHHHHH
Q 037947 169 DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGL-----FLGEHEDVSERAHL 243 (780)
Q Consensus 169 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~-----~~~~~~~~~~~~~~ 243 (780)
.++.-+++|.|+-|+||||++..+++....+.. ..++..+..+-+-.-.-...++++... ..+...|..-....
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 345679999999999999999999999887743 456666655544333333445555321 12233345555666
Q ss_pred HHHHhccCc
Q 037947 244 LRQRLKASR 252 (780)
Q Consensus 244 l~~~L~~kr 252 (780)
|....+++.
T Consensus 126 Lnai~~g~~ 134 (300)
T COG4240 126 LNAIARGGP 134 (300)
T ss_pred HHHHhcCCC
Confidence 666666663
No 491
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.49 E-value=0.1 Score=50.34 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=31.6
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHH
Q 037947 175 IGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNE 222 (780)
Q Consensus 175 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 222 (780)
+.|.|++|+|||+||.++....... =..++|++... +..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 6799999999999999988776533 24577887654 34444443
No 492
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.46 E-value=0.079 Score=50.25 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...|.|+|+.|+||||+++.+....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 3569999999999999999999875
No 493
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.44 E-value=0.21 Score=52.43 Aligned_cols=39 Identities=36% Similarity=0.657 Sum_probs=30.8
Q ss_pred HHHHHHHc--cCCccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 161 QDIMEALK--DDNINVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 161 ~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
.++++.+. ..+..+|+|.|++|+|||||+..+.......
T Consensus 43 ~~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 43 QELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 44555543 3567899999999999999999998887654
No 494
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.43 E-value=0.055 Score=50.89 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=19.7
Q ss_pred EEEEcCCCChHHHHHHHHHHHH
Q 037947 175 IGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 175 v~I~G~gGiGKTtLa~~v~~~~ 196 (780)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998775
No 495
>PRK13975 thymidylate kinase; Provisional
Probab=93.43 E-value=0.072 Score=51.85 Aligned_cols=26 Identities=38% Similarity=0.488 Sum_probs=23.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
.+|+|.|+.|+||||+|+.+.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 57999999999999999999998753
No 496
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.41 E-value=0.42 Score=52.82 Aligned_cols=82 Identities=27% Similarity=0.304 Sum_probs=50.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcC-----CCCCHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLG-----EHEDVSERAHLLRQ 246 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 246 (780)
..++.|.|.+|+|||||+.+++.....+ -..++|++.... ...+.. -++.++.... .+.+.+. +.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~----i~~ 150 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEA----ILA 150 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHH----HHH
Confidence 4689999999999999999998876533 245788876543 333322 2445543221 1122333 333
Q ss_pred Hhc-cCcEEEEEeCCCC
Q 037947 247 RLK-ASRVLVILDDVWN 262 (780)
Q Consensus 247 ~L~-~kr~LlVlDdv~~ 262 (780)
.++ .+.-++|+|.+..
T Consensus 151 ~i~~~~~~lVVIDSIq~ 167 (446)
T PRK11823 151 TIEEEKPDLVVIDSIQT 167 (446)
T ss_pred HHHhhCCCEEEEechhh
Confidence 333 3556899998743
No 497
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.41 E-value=0.072 Score=50.95 Aligned_cols=37 Identities=27% Similarity=0.331 Sum_probs=27.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVV 209 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 209 (780)
....|++|+|++|.|||||.+.+..-.... .+.+|+.
T Consensus 26 ~~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~ 62 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVD 62 (240)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEEC
Confidence 345799999999999999999986644322 4566664
No 498
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.41 E-value=0.067 Score=53.57 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=23.0
Q ss_pred EEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEc
Q 037947 177 IYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVS 211 (780)
Q Consensus 177 I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 211 (780)
|+||+|+||||+++.+.+.....+ ..++-|+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEEEcc
Confidence 689999999999999999886653 334445443
No 499
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=93.40 E-value=0.11 Score=48.30 Aligned_cols=27 Identities=37% Similarity=0.612 Sum_probs=24.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
++++|+|..|+|||||+..+......+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999987654
No 500
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.38 E-value=0.073 Score=51.91 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=22.9
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
....+++|+|.+|+|||||++.+.--.
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 345789999999999999999997544
Done!