Query 037947
Match_columns 780
No_of_seqs 447 out of 4708
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 09:48:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037947.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037947hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.2E-46 4.1E-51 427.0 21.6 307 154-490 131-471 (549)
2 1vt4_I APAF-1 related killer D 100.0 1.5E-38 5E-43 363.1 21.6 282 153-483 130-436 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 3.6E-38 1.2E-42 396.0 26.0 314 147-490 120-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 2.9E-34 9.9E-39 330.6 26.5 307 148-487 121-449 (591)
5 4fcg_A Uncharacterized protein 99.8 6.8E-19 2.3E-23 186.2 18.8 210 511-731 81-308 (328)
6 1ogq_A PGIP-2, polygalacturona 99.8 2.2E-19 7.5E-24 188.8 13.5 242 511-764 50-307 (313)
7 3v47_A TOLL-like receptor 5B a 99.8 9.2E-19 3.2E-23 194.7 19.3 266 511-779 30-400 (455)
8 4fcg_A Uncharacterized protein 99.8 4.7E-19 1.6E-23 187.4 15.7 214 531-757 79-310 (328)
9 4fmz_A Internalin; leucine ric 99.8 9.1E-18 3.1E-22 179.5 24.4 247 513-780 68-339 (347)
10 2id5_A Lingo-1, leucine rich r 99.8 5E-18 1.7E-22 189.9 19.9 264 512-779 33-325 (477)
11 4fmz_A Internalin; leucine ric 99.8 1.2E-17 4.2E-22 178.5 21.7 257 512-779 45-316 (347)
12 2id5_A Lingo-1, leucine rich r 99.8 1.4E-17 4.9E-22 186.2 23.1 234 514-757 14-257 (477)
13 3oja_B Anopheles plasmodium-re 99.8 7.7E-18 2.6E-22 193.5 21.3 259 510-779 50-350 (597)
14 3o6n_A APL1; leucine-rich repe 99.8 1.3E-17 4.5E-22 181.3 22.0 257 512-779 46-344 (390)
15 4ecn_A Leucine-rich repeat pro 99.8 2.5E-18 8.6E-23 202.4 16.8 182 523-715 437-655 (876)
16 3o6n_A APL1; leucine-rich repe 99.8 5.4E-18 1.8E-22 184.4 18.3 134 529-664 41-178 (390)
17 1ogq_A PGIP-2, polygalacturona 99.8 2E-18 7E-23 181.3 13.2 233 533-780 50-297 (313)
18 3zyj_A Leucine-rich repeat-con 99.8 1E-17 3.5E-22 185.1 19.0 210 513-733 66-288 (440)
19 2z80_A TOLL-like receptor 2, v 99.8 3.3E-18 1.1E-22 183.4 14.5 191 516-715 36-233 (353)
20 3vq2_A TLR4, TOLL-like recepto 99.8 1.9E-17 6.6E-22 191.1 21.9 141 511-653 32-179 (606)
21 3zyi_A Leucine-rich repeat-con 99.8 1E-17 3.5E-22 185.9 18.9 192 513-715 77-277 (452)
22 1o6v_A Internalin A; bacterial 99.8 3.4E-17 1.2E-21 182.3 22.0 254 513-779 48-336 (466)
23 4eco_A Uncharacterized protein 99.7 2.9E-18 1E-22 198.2 12.6 243 512-757 250-545 (636)
24 4ecn_A Leucine-rich repeat pro 99.7 4.7E-18 1.6E-22 200.1 14.4 244 511-757 491-785 (876)
25 4eco_A Uncharacterized protein 99.7 4.5E-18 1.5E-22 196.6 14.0 215 531-757 204-466 (636)
26 3t6q_A CD180 antigen; protein- 99.7 2.7E-17 9.1E-22 189.9 19.5 244 512-757 34-359 (606)
27 2z63_A TOLL-like receptor 4, v 99.7 3.3E-17 1.1E-21 187.7 19.8 151 511-663 28-189 (570)
28 2z66_A Variable lymphocyte rec 99.7 9.8E-18 3.4E-22 175.8 13.7 237 511-756 28-282 (306)
29 1o6v_A Internalin A; bacterial 99.7 8E-17 2.7E-21 179.4 21.7 179 582-779 178-358 (466)
30 1xku_A Decorin; proteoglycan, 99.7 6E-17 2.1E-21 171.7 18.5 239 513-768 33-282 (330)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 1.2E-16 4.2E-21 182.4 22.1 147 624-779 351-502 (562)
32 2z7x_B TOLL-like receptor 1, v 99.7 8.5E-17 2.9E-21 182.0 20.5 146 625-779 323-473 (520)
33 1ozn_A Reticulon 4 receptor; N 99.7 1.4E-16 4.9E-21 165.1 20.4 191 513-712 34-233 (285)
34 3oja_B Anopheles plasmodium-re 99.7 5E-17 1.7E-21 186.7 18.6 232 512-759 76-356 (597)
35 3rgz_A Protein brassinosteroid 99.7 8.9E-17 3E-21 190.2 20.7 252 512-765 395-721 (768)
36 1xku_A Decorin; proteoglycan, 99.7 1.9E-16 6.6E-21 167.9 21.2 235 511-759 52-304 (330)
37 2z81_A CD282 antigen, TOLL-lik 99.7 4.1E-17 1.4E-21 186.0 17.1 147 511-659 26-180 (549)
38 3v47_A TOLL-like receptor 5B a 99.7 8.1E-17 2.8E-21 178.9 18.9 147 514-664 13-167 (455)
39 2ft3_A Biglycan; proteoglycan, 99.7 8.5E-17 2.9E-21 170.7 18.0 234 512-760 55-306 (332)
40 3bz5_A Internalin-J, INLJ; leu 99.7 2.1E-16 7.3E-21 174.6 21.9 240 512-765 43-303 (457)
41 3j0a_A TOLL-like receptor 5; m 99.7 7.7E-17 2.6E-21 192.8 19.5 266 511-779 24-367 (844)
42 3rgz_A Protein brassinosteroid 99.7 7.5E-17 2.6E-21 190.8 18.9 256 512-779 369-709 (768)
43 3vq2_A TLR4, TOLL-like recepto 99.7 1.3E-16 4.3E-21 184.3 20.3 180 514-700 14-199 (606)
44 2z81_A CD282 antigen, TOLL-lik 99.7 4.4E-17 1.5E-21 185.8 16.1 180 516-697 10-211 (549)
45 2ft3_A Biglycan; proteoglycan, 99.7 2.1E-16 7.2E-21 167.7 20.3 233 512-759 79-331 (332)
46 1ozn_A Reticulon 4 receptor; N 99.7 1.9E-16 6.6E-21 164.1 19.3 212 514-735 14-236 (285)
47 2o6q_A Variable lymphocyte rec 99.7 4.1E-16 1.4E-20 160.1 20.5 192 513-714 18-215 (270)
48 1p9a_G Platelet glycoprotein I 99.7 3.5E-16 1.2E-20 162.1 19.5 193 512-715 11-206 (290)
49 3g06_A SSPH2 (leucine-rich rep 99.7 6.4E-16 2.2E-20 176.0 22.8 216 512-765 62-277 (622)
50 1h6u_A Internalin H; cell adhe 99.7 5.1E-16 1.7E-20 162.6 20.1 189 512-717 42-230 (308)
51 3t6q_A CD180 antigen; protein- 99.7 2.9E-16 1E-20 181.2 19.9 241 513-759 303-558 (606)
52 2z7x_B TOLL-like receptor 1, v 99.7 4E-16 1.4E-20 176.4 20.5 119 512-635 22-147 (520)
53 3zyi_A Leucine-rich repeat-con 99.7 2.3E-16 8E-21 174.8 17.8 236 513-759 56-301 (452)
54 3zyj_A Leucine-rich repeat-con 99.7 2.9E-16 1E-20 173.4 17.7 236 513-759 45-290 (440)
55 1ziw_A TOLL-like receptor 3; i 99.7 2.9E-16 9.8E-21 183.8 18.5 242 511-758 25-306 (680)
56 2z66_A Variable lymphocyte rec 99.7 1.7E-16 5.9E-21 166.3 14.0 237 514-759 10-259 (306)
57 2z80_A TOLL-like receptor 2, v 99.7 4.9E-16 1.7E-20 166.3 17.3 236 531-779 29-306 (353)
58 1ziw_A TOLL-like receptor 3; i 99.7 5E-16 1.7E-20 181.8 18.5 261 512-779 50-358 (680)
59 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 6.1E-16 2.1E-20 176.6 18.3 143 514-663 34-181 (562)
60 3bz5_A Internalin-J, INLJ; leu 99.7 1.5E-15 5.1E-20 167.9 19.6 202 531-757 40-242 (457)
61 2o6q_A Variable lymphocyte rec 99.6 5.3E-15 1.8E-19 151.8 20.6 177 511-696 37-219 (270)
62 1p9a_G Platelet glycoprotein I 99.6 2.2E-15 7.7E-20 156.0 17.9 192 531-734 8-205 (290)
63 3o53_A Protein LRIM1, AGAP0063 99.6 8.3E-17 2.8E-21 169.5 6.9 235 512-764 35-278 (317)
64 1h6u_A Internalin H; cell adhe 99.6 1.9E-15 6.6E-20 158.1 16.9 196 523-735 31-228 (308)
65 3j0a_A TOLL-like receptor 5; m 99.6 8.2E-15 2.8E-19 175.2 24.5 58 604-662 267-325 (844)
66 2z63_A TOLL-like receptor 4, v 99.6 1.3E-15 4.4E-20 174.5 16.7 176 515-697 11-192 (570)
67 2z62_A TOLL-like receptor 4, v 99.6 4.8E-15 1.6E-19 152.7 19.1 195 533-733 28-233 (276)
68 3oja_A Leucine-rich immune mol 99.6 4.4E-16 1.5E-20 173.7 12.1 227 512-756 35-270 (487)
69 2z62_A TOLL-like receptor 4, v 99.6 1.9E-15 6.7E-20 155.7 16.1 195 511-715 28-235 (276)
70 2xwt_C Thyrotropin receptor; s 99.6 1.4E-15 4.9E-20 153.0 14.3 191 512-712 32-234 (239)
71 3m19_A Variable lymphocyte rec 99.6 7E-15 2.4E-19 149.1 19.4 175 513-697 16-194 (251)
72 3rfs_A Internalin B, repeat mo 99.6 3E-15 1E-19 153.8 16.6 172 512-694 42-217 (272)
73 3o53_A Protein LRIM1, AGAP0063 99.6 2.9E-16 1E-20 165.3 9.0 213 531-759 32-248 (317)
74 3rfs_A Internalin B, repeat mo 99.6 1.1E-14 3.6E-19 149.7 20.1 197 520-731 28-229 (272)
75 3oja_A Leucine-rich immune mol 99.6 4E-16 1.4E-20 174.1 9.9 214 531-760 32-249 (487)
76 1h6t_A Internalin B; cell adhe 99.6 6.3E-15 2.1E-19 152.8 18.1 172 512-700 47-218 (291)
77 1w5s_A Origin recognition comp 99.6 5E-14 1.7E-18 154.2 25.9 308 150-479 21-387 (412)
78 1jl5_A Outer protein YOPM; leu 99.6 1.9E-14 6.5E-19 158.8 21.9 233 512-779 112-362 (454)
79 1wwl_A Monocyte differentiatio 99.6 4.6E-17 1.6E-21 171.1 0.8 236 513-757 45-305 (312)
80 2qen_A Walker-type ATPase; unk 99.6 3.5E-14 1.2E-18 151.7 22.9 296 148-483 9-348 (350)
81 3g06_A SSPH2 (leucine-rich rep 99.6 2.5E-14 8.7E-19 162.9 22.8 215 511-759 81-295 (622)
82 1wwl_A Monocyte differentiatio 99.6 1.9E-15 6.4E-20 158.7 11.8 177 532-716 94-286 (312)
83 2xwt_C Thyrotropin receptor; s 99.6 5.8E-15 2E-19 148.6 13.5 182 520-713 20-214 (239)
84 1jl5_A Outer protein YOPM; leu 99.6 4.2E-14 1.4E-18 156.1 21.6 215 512-757 92-306 (454)
85 1h6t_A Internalin B; cell adhe 99.6 2.1E-14 7.2E-19 148.9 16.5 180 520-716 33-212 (291)
86 2fna_A Conserved hypothetical 99.6 1.3E-13 4.6E-18 147.6 22.8 294 149-483 11-356 (357)
87 1m9s_A Internalin B; cell inva 99.6 2E-14 6.8E-19 163.6 16.8 172 512-700 44-215 (605)
88 3m19_A Variable lymphocyte rec 99.6 6.7E-14 2.3E-18 141.8 17.2 171 533-715 14-190 (251)
89 2v70_A SLIT-2, SLIT homolog 2 99.5 6.5E-14 2.2E-18 138.6 15.0 148 514-663 14-165 (220)
90 3e6j_A Variable lymphocyte rec 99.5 1.1E-13 3.9E-18 137.9 16.9 148 514-664 22-172 (229)
91 4glp_A Monocyte differentiatio 99.5 1.9E-14 6.3E-19 151.0 10.4 11 747-757 293-303 (310)
92 2o6s_A Variable lymphocyte rec 99.5 7E-14 2.4E-18 137.3 13.7 171 514-701 10-185 (208)
93 1m9s_A Internalin B; cell inva 99.5 5E-14 1.7E-18 160.2 14.4 182 518-716 28-209 (605)
94 4g8a_A TOLL-like receptor 4; l 99.5 4.1E-13 1.4E-17 155.6 22.1 140 511-652 52-198 (635)
95 4glp_A Monocyte differentiatio 99.5 6.2E-14 2.1E-18 146.9 13.6 192 512-714 92-304 (310)
96 4ezg_A Putative uncharacterize 99.5 9.7E-14 3.3E-18 134.9 13.4 150 531-695 42-194 (197)
97 2v9t_B SLIT homolog 2 protein 99.5 1.8E-13 6.2E-18 135.4 15.2 147 514-663 14-164 (220)
98 1xeu_A Internalin C; cellular 99.5 1E-13 3.5E-18 141.3 13.1 168 515-700 23-190 (263)
99 3cvr_A Invasion plasmid antige 99.5 3.4E-13 1.2E-17 151.7 18.2 181 512-716 60-242 (571)
100 2ast_B S-phase kinase-associat 99.5 1.4E-14 4.8E-19 153.8 6.6 174 512-693 71-258 (336)
101 4ezg_A Putative uncharacterize 99.5 2.1E-13 7.2E-18 132.5 13.3 145 512-663 45-193 (197)
102 2v9t_B SLIT homolog 2 protein 99.4 7.1E-13 2.4E-17 131.2 14.4 147 536-694 14-164 (220)
103 2ca6_A RAN GTPase-activating p 99.4 5.3E-14 1.8E-18 152.4 6.8 242 512-757 33-339 (386)
104 2v70_A SLIT-2, SLIT homolog 2 99.4 9.4E-13 3.2E-17 130.3 14.5 148 536-695 14-166 (220)
105 2ast_B S-phase kinase-associat 99.4 8.2E-14 2.8E-18 147.9 7.2 242 513-766 49-310 (336)
106 2ca6_A RAN GTPase-activating p 99.4 4.3E-14 1.5E-18 153.2 5.1 225 531-759 30-314 (386)
107 2xot_A Amphoterin-induced prot 99.4 6.8E-13 2.3E-17 142.1 13.5 146 515-663 22-175 (361)
108 3cvr_A Invasion plasmid antige 99.4 1.8E-12 6.3E-17 145.7 17.3 174 533-736 59-242 (571)
109 4ay9_X Follicle-stimulating ho 99.4 1.1E-12 3.8E-17 139.8 14.7 191 512-711 31-230 (350)
110 1xeu_A Internalin C; cellular 99.4 1.5E-12 5.1E-17 132.6 14.9 143 512-663 42-184 (263)
111 2ell_A Acidic leucine-rich nuc 99.4 8.9E-13 3.1E-17 124.5 12.2 139 557-700 23-165 (168)
112 4g8a_A TOLL-like receptor 4; l 99.4 2.1E-12 7.2E-17 149.6 17.6 175 519-700 39-219 (635)
113 1z7x_W Ribonuclease inhibitor; 99.4 3.5E-14 1.2E-18 157.9 0.4 178 581-764 142-356 (461)
114 1z7x_W Ribonuclease inhibitor; 99.4 5.6E-14 1.9E-18 156.3 1.0 148 513-661 87-266 (461)
115 3e6j_A Variable lymphocyte rec 99.4 4.9E-12 1.7E-16 126.0 15.1 151 535-698 21-175 (229)
116 2xot_A Amphoterin-induced prot 99.4 1.6E-12 5.5E-17 139.2 12.1 151 512-664 40-202 (361)
117 2ell_A Acidic leucine-rich nuc 99.4 1.3E-12 4.6E-17 123.3 10.0 129 532-663 23-159 (168)
118 1dce_A Protein (RAB geranylger 99.4 7.1E-15 2.4E-19 166.3 -6.9 189 512-710 350-566 (567)
119 2o6s_A Variable lymphocyte rec 99.4 1.2E-11 4.3E-16 121.1 16.8 148 536-695 10-161 (208)
120 4ay9_X Follicle-stimulating ho 99.4 5.2E-12 1.8E-16 134.6 15.1 230 516-757 14-255 (350)
121 2je0_A Acidic leucine-rich nuc 99.4 1.2E-12 4E-17 120.9 8.6 123 533-658 17-147 (149)
122 2qby_B CDC6 homolog 3, cell di 99.3 2.7E-11 9.3E-16 131.0 19.0 287 151-466 20-338 (384)
123 3qfl_A MLA10; coiled-coil, (CC 99.3 1.8E-12 6.1E-17 112.1 7.0 77 8-91 3-80 (115)
124 4b8c_D Glucose-repressible alc 99.3 3.2E-12 1.1E-16 149.1 11.3 150 512-665 174-330 (727)
125 2v1u_A Cell division control p 99.3 6E-11 2.1E-15 128.3 20.4 292 150-466 18-350 (387)
126 1w8a_A SLIT protein; signaling 99.3 1.2E-11 4E-16 119.5 12.7 123 536-663 11-138 (192)
127 1a9n_A U2A', U2A'; complex (nu 99.3 3.7E-12 1.3E-16 121.2 8.2 128 530-661 16-150 (176)
128 2je0_A Acidic leucine-rich nuc 99.3 4.8E-12 1.6E-16 116.8 8.6 130 556-690 15-148 (149)
129 2wfh_A SLIT homolog 2 protein 99.3 2.2E-11 7.6E-16 117.6 13.5 123 536-663 13-138 (193)
130 1fnn_A CDC6P, cell division co 99.3 2.7E-10 9.1E-15 123.3 23.5 290 151-466 17-350 (389)
131 1w8a_A SLIT protein; signaling 99.3 2.4E-11 8.2E-16 117.3 13.4 126 560-695 10-139 (192)
132 3goz_A Leucine-rich repeat-con 99.3 2.5E-12 8.4E-17 137.9 7.0 237 517-758 4-294 (362)
133 1njg_A DNA polymerase III subu 99.3 7.8E-11 2.7E-15 118.5 17.1 200 147-361 19-231 (250)
134 2chg_A Replication factor C sm 99.3 7.8E-11 2.7E-15 116.7 16.3 190 148-360 14-206 (226)
135 1a9n_A U2A', U2A'; complex (nu 99.3 1.2E-11 4.1E-16 117.6 9.8 136 554-695 15-153 (176)
136 4b8c_D Glucose-repressible alc 99.3 2.5E-12 8.4E-17 150.1 5.5 130 531-663 222-353 (727)
137 2wfh_A SLIT homolog 2 protein 99.2 6.8E-11 2.3E-15 114.1 13.9 126 560-695 12-139 (193)
138 2qby_A CDC6 homolog 1, cell di 99.2 4.7E-11 1.6E-15 129.1 13.9 293 150-466 19-347 (386)
139 3goz_A Leucine-rich repeat-con 99.2 5.6E-12 1.9E-16 135.1 6.3 199 512-715 23-264 (362)
140 3ogk_B Coronatine-insensitive 99.2 1.5E-12 5.1E-17 149.7 1.9 258 512-779 113-408 (592)
141 1dce_A Protein (RAB geranylger 99.2 5.3E-11 1.8E-15 134.5 13.1 104 535-642 443-548 (567)
142 3ogk_B Coronatine-insensitive 99.2 7.9E-12 2.7E-16 143.6 5.3 73 703-776 462-540 (592)
143 2o6r_A Variable lymphocyte rec 99.2 2.1E-10 7.2E-15 109.1 13.6 105 558-663 28-136 (177)
144 1ds9_A Outer arm dynein; leuci 99.2 4.5E-13 1.5E-17 130.3 -6.1 106 554-662 44-151 (198)
145 2o6r_A Variable lymphocyte rec 99.1 3.6E-10 1.2E-14 107.5 13.5 125 514-641 10-138 (177)
146 2p1m_B Transport inhibitor res 99.1 3E-12 1E-16 147.1 -1.2 257 512-779 106-402 (594)
147 2p1m_B Transport inhibitor res 99.1 1.2E-11 4.2E-16 142.0 0.4 103 511-613 130-245 (594)
148 2r9u_A Variable lymphocyte rec 99.1 6.3E-10 2.2E-14 105.3 11.9 100 561-663 15-117 (174)
149 3g39_A Variable lymphocyte rec 99.1 6.3E-10 2.2E-14 104.9 11.8 101 560-663 11-114 (170)
150 1ds9_A Outer arm dynein; leuci 99.1 4E-12 1.4E-16 123.6 -3.6 141 513-657 25-180 (198)
151 1sxj_B Activator 1 37 kDa subu 99.1 9.7E-10 3.3E-14 115.6 14.0 191 146-359 16-211 (323)
152 2r9u_A Variable lymphocyte rec 98.9 4.9E-09 1.7E-13 99.1 11.0 102 536-642 15-120 (174)
153 1iqp_A RFCS; clamp loader, ext 98.9 4.4E-09 1.5E-13 110.7 11.1 190 147-362 21-216 (327)
154 3g39_A Variable lymphocyte rec 98.8 1.8E-08 6.1E-13 94.9 12.1 102 535-641 11-116 (170)
155 2chq_A Replication factor C sm 98.8 6.7E-08 2.3E-12 101.2 14.8 188 147-360 13-206 (319)
156 3te6_A Regulatory protein SIR3 98.8 1.5E-07 5.3E-12 96.6 16.9 173 152-328 21-212 (318)
157 3sb4_A Hypothetical leucine ri 98.7 5.6E-08 1.9E-12 102.3 12.0 57 532-590 100-157 (329)
158 2ifg_A High affinity nerve gro 98.7 5.4E-08 1.8E-12 103.3 11.2 96 537-635 12-112 (347)
159 1hqc_A RUVB; extended AAA-ATPa 98.7 1.9E-07 6.5E-12 98.0 15.2 186 149-362 10-215 (324)
160 1jr3_A DNA polymerase III subu 98.6 3E-07 1E-11 98.5 15.3 196 148-359 13-222 (373)
161 1jbk_A CLPB protein; beta barr 98.6 9.3E-08 3.2E-12 91.7 9.9 160 149-323 20-194 (195)
162 3sb4_A Hypothetical leucine ri 98.6 1.8E-07 6.2E-12 98.3 12.1 153 548-711 83-304 (329)
163 3un9_A NLR family member X1; l 98.6 1.3E-08 4.6E-13 108.5 1.7 124 512-635 73-220 (372)
164 1sxj_D Activator 1 41 kDa subu 98.5 3.6E-07 1.2E-11 97.2 11.4 198 146-358 32-235 (353)
165 2ifg_A High affinity nerve gro 98.5 3E-07 1E-11 97.5 10.5 101 515-616 12-116 (347)
166 3pvs_A Replication-associated 98.5 3E-06 1E-10 92.1 17.7 181 147-360 22-217 (447)
167 3bos_A Putative DNA replicatio 98.5 4E-07 1.4E-11 90.9 10.0 176 150-358 27-217 (242)
168 3un9_A NLR family member X1; l 98.5 1.2E-08 4.2E-13 108.9 -1.6 161 532-696 71-253 (372)
169 1sxj_E Activator 1 40 kDa subu 98.5 6.7E-07 2.3E-11 95.1 11.8 200 147-360 10-239 (354)
170 4fdw_A Leucine rich hypothetic 98.4 2.2E-06 7.6E-11 92.2 15.5 211 513-734 137-355 (401)
171 1d2n_A N-ethylmaleimide-sensit 98.4 9.8E-06 3.4E-10 82.4 18.1 205 152-381 34-266 (272)
172 3h4m_A Proteasome-activating n 98.4 4.8E-06 1.6E-10 85.4 15.3 186 149-357 15-230 (285)
173 3pfi_A Holliday junction ATP-d 98.3 7E-06 2.4E-10 86.5 15.5 183 148-359 26-228 (338)
174 1sxj_A Activator 1 95 kDa subu 98.3 3.4E-06 1.2E-10 94.1 13.5 203 141-358 29-253 (516)
175 2qz4_A Paraplegin; AAA+, SPG7, 98.3 1.6E-05 5.3E-10 80.4 17.2 188 150-357 5-221 (262)
176 3u61_B DNA polymerase accessor 98.3 3.8E-06 1.3E-10 88.0 12.8 191 140-360 15-218 (324)
177 4fdw_A Leucine rich hypothetic 98.3 1.4E-05 4.7E-10 86.1 16.9 213 534-765 136-361 (401)
178 2z4s_A Chromosomal replication 98.3 6.6E-06 2.3E-10 89.6 14.0 186 150-357 104-305 (440)
179 1sxj_C Activator 1 40 kDa subu 98.2 7.1E-06 2.4E-10 86.5 13.4 190 141-354 15-208 (340)
180 3uk6_A RUVB-like 2; hexameric 98.2 1.5E-05 5.1E-10 85.1 15.8 197 150-358 43-303 (368)
181 3d8b_A Fidgetin-like protein 1 98.2 3.9E-05 1.3E-09 81.2 18.3 185 149-359 82-296 (357)
182 1xwi_A SKD1 protein; VPS4B, AA 98.2 4.3E-05 1.5E-09 79.5 17.9 189 149-358 10-223 (322)
183 3syl_A Protein CBBX; photosynt 98.2 6.3E-06 2.2E-10 85.6 10.9 153 152-328 32-218 (309)
184 3eie_A Vacuolar protein sortin 98.1 5.4E-05 1.9E-09 78.9 17.7 189 148-358 15-228 (322)
185 1a5t_A Delta prime, HOLB; zinc 98.1 3.1E-05 1E-09 81.2 15.4 170 157-357 8-204 (334)
186 2ra8_A Uncharacterized protein 98.1 2.5E-06 8.7E-11 90.1 6.9 137 552-694 166-319 (362)
187 3pxg_A Negative regulator of g 98.1 2.2E-05 7.4E-10 86.3 14.5 150 149-328 178-339 (468)
188 2qp9_X Vacuolar protein sortin 98.1 6.9E-05 2.3E-09 79.2 16.9 188 149-358 49-261 (355)
189 2p65_A Hypothetical protein PF 98.1 8.2E-06 2.8E-10 77.5 8.6 50 149-198 20-69 (187)
190 2zan_A Vacuolar protein sortin 98.0 0.00011 3.8E-09 80.1 17.9 185 149-358 132-345 (444)
191 3vfd_A Spastin; ATPase, microt 98.0 0.00014 5E-09 77.9 18.7 189 148-358 112-326 (389)
192 3b9p_A CG5977-PA, isoform A; A 98.0 0.00028 9.7E-09 72.5 19.9 188 149-358 19-233 (297)
193 1l8q_A Chromosomal replication 98.0 5.4E-05 1.9E-09 79.0 14.1 168 159-353 22-203 (324)
194 4b4t_J 26S protease regulatory 98.0 6.9E-05 2.4E-09 78.9 14.6 180 149-351 146-354 (405)
195 3cf0_A Transitional endoplasmi 98.0 0.00013 4.5E-09 75.1 15.9 183 149-353 13-223 (301)
196 1qvr_A CLPB protein; coiled co 97.9 4.5E-05 1.5E-09 90.5 13.2 160 148-327 167-345 (854)
197 4b4t_L 26S protease subunit RP 97.9 0.00016 5.3E-09 77.5 14.6 180 149-351 179-387 (437)
198 3pxi_A Negative regulator of g 97.9 0.00011 3.6E-09 86.2 14.5 150 149-328 178-339 (758)
199 2ra8_A Uncharacterized protein 97.8 9.3E-06 3.2E-10 85.8 4.8 61 573-634 164-227 (362)
200 1lv7_A FTSH; alpha/beta domain 97.8 0.0003 1E-08 70.6 15.3 187 148-356 9-223 (257)
201 4b4t_I 26S protease regulatory 97.8 0.001 3.5E-08 70.2 19.6 181 148-351 179-388 (437)
202 4b4t_M 26S protease regulatory 97.8 0.00015 5.2E-09 77.5 13.5 181 148-351 178-387 (434)
203 4b4t_H 26S protease regulatory 97.8 0.00042 1.4E-08 74.0 16.6 179 150-351 208-415 (467)
204 3ec2_A DNA replication protein 97.8 2.9E-05 9.7E-10 73.4 7.0 117 157-296 20-143 (180)
205 1r6b_X CLPA protein; AAA+, N-t 97.8 0.00035 1.2E-08 82.0 16.9 156 149-327 184-362 (758)
206 2gno_A DNA polymerase III, gam 97.7 0.00013 4.4E-09 75.0 11.2 145 156-327 2-152 (305)
207 3e4g_A ATP synthase subunit S, 97.7 1.3E-05 4.5E-10 74.2 3.3 84 558-641 61-154 (176)
208 3n70_A Transport activator; si 97.7 2.2E-05 7.6E-10 71.2 4.4 45 152-196 2-48 (145)
209 1io0_A Tropomodulin; LRR prote 97.7 1.5E-05 5.1E-10 75.8 3.1 107 554-661 32-161 (185)
210 2w58_A DNAI, primosome compone 97.7 5.3E-05 1.8E-09 73.0 7.1 125 150-296 24-159 (202)
211 1io0_A Tropomodulin; LRR prote 97.7 2.8E-05 9.5E-10 73.8 4.5 106 531-636 34-161 (185)
212 3e4g_A ATP synthase subunit S, 97.6 2.8E-05 9.7E-10 72.0 4.1 79 534-613 62-149 (176)
213 4b4t_K 26S protease regulatory 97.6 0.0017 5.9E-08 69.3 17.2 180 149-351 170-379 (428)
214 1ofh_A ATP-dependent HSL prote 97.6 0.0003 1E-08 72.7 11.2 46 151-196 15-74 (310)
215 3rw6_A Nuclear RNA export fact 97.6 7.5E-05 2.6E-09 74.7 6.2 78 555-632 167-257 (267)
216 2r62_A Cell division protease 97.6 7.1E-05 2.4E-09 75.8 6.0 48 150-197 10-69 (268)
217 2ce7_A Cell division protein F 97.5 0.0008 2.7E-08 73.2 14.5 181 149-351 14-221 (476)
218 3hu3_A Transitional endoplasmi 97.5 0.00099 3.4E-08 73.0 15.2 181 150-357 203-414 (489)
219 2c9o_A RUVB-like 1; hexameric 97.4 0.0007 2.4E-08 74.0 12.2 48 150-197 36-88 (456)
220 4fcw_A Chaperone protein CLPB; 97.4 0.00038 1.3E-08 72.1 9.5 104 152-263 18-131 (311)
221 1in4_A RUVB, holliday junction 97.4 0.0021 7.3E-08 67.0 15.3 182 148-358 22-223 (334)
222 3m6a_A ATP-dependent protease 97.3 0.0015 5.2E-08 72.9 12.8 165 151-327 81-266 (543)
223 3co5_A Putative two-component 97.2 6.5E-05 2.2E-09 67.9 0.8 45 152-196 5-51 (143)
224 2kjq_A DNAA-related protein; s 97.2 0.00023 7.9E-09 64.6 4.4 40 171-212 35-74 (149)
225 3cf2_A TER ATPase, transitiona 97.2 0.0013 4.5E-08 75.7 11.6 179 150-352 203-408 (806)
226 3rw6_A Nuclear RNA export fact 97.1 0.00047 1.6E-08 68.9 6.2 59 601-662 168-231 (267)
227 1ojl_A Transcriptional regulat 97.0 0.0021 7.3E-08 66.0 9.9 45 152-196 3-49 (304)
228 3pxi_A Negative regulator of g 96.9 0.00092 3.2E-08 78.3 7.4 154 151-326 491-674 (758)
229 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.00065 2.2E-08 69.0 4.6 70 172-263 123-194 (331)
230 1ixz_A ATP-dependent metallopr 96.8 0.016 5.6E-07 57.6 14.6 180 149-351 14-221 (254)
231 2dhr_A FTSH; AAA+ protein, hex 96.8 0.0083 2.8E-07 65.6 13.2 177 149-351 29-236 (499)
232 2cvh_A DNA repair and recombin 96.8 0.0047 1.6E-07 59.9 10.1 87 171-263 19-117 (220)
233 2x8a_A Nuclear valosin-contain 96.7 0.014 4.8E-07 58.7 13.0 156 150-328 9-192 (274)
234 1iy2_A ATP-dependent metallopr 96.7 0.019 6.4E-07 58.1 13.7 180 149-351 38-245 (278)
235 4fs7_A Uncharacterized protein 96.7 0.0076 2.6E-07 64.5 11.3 227 530-778 159-392 (394)
236 4fs7_A Uncharacterized protein 96.6 0.016 5.5E-07 61.9 13.6 61 598-661 157-218 (394)
237 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0074 2.5E-07 59.1 8.9 117 171-296 22-168 (235)
238 3io5_A Recombination and repai 96.4 0.015 5.1E-07 58.7 10.8 85 174-263 30-123 (333)
239 1n0w_A DNA repair protein RAD5 96.4 0.012 3.9E-07 58.1 9.8 92 171-263 23-131 (243)
240 3hr8_A Protein RECA; alpha and 96.4 0.013 4.4E-07 61.0 10.4 86 171-263 60-151 (356)
241 1xp8_A RECA protein, recombina 96.3 0.017 5.7E-07 60.6 11.1 86 171-263 73-164 (366)
242 1ypw_A Transitional endoplasmi 96.3 0.022 7.5E-07 66.6 13.2 159 149-328 202-386 (806)
243 2qgz_A Helicase loader, putati 96.3 0.0069 2.4E-07 62.2 7.9 52 158-211 135-190 (308)
244 1r6b_X CLPA protein; AAA+, N-t 96.3 0.0071 2.4E-07 70.8 8.9 57 151-212 458-523 (758)
245 3t15_A Ribulose bisphosphate c 96.3 0.0035 1.2E-07 64.0 5.5 26 172-197 36-61 (293)
246 1v5w_A DMC1, meiotic recombina 96.3 0.022 7.4E-07 59.5 11.4 91 171-262 121-230 (343)
247 2px0_A Flagellar biosynthesis 96.2 0.02 6.8E-07 58.2 10.2 86 171-259 104-190 (296)
248 2zr9_A Protein RECA, recombina 96.1 0.024 8.1E-07 59.1 10.9 86 171-263 60-151 (349)
249 1u94_A RECA protein, recombina 96.1 0.02 6.8E-07 59.8 10.1 85 171-262 62-152 (356)
250 2i1q_A DNA repair and recombin 96.1 0.02 6.7E-07 59.3 10.0 90 171-261 97-214 (322)
251 2z43_A DNA repair and recombin 96.0 0.023 8E-07 58.7 10.3 91 171-262 106-214 (324)
252 1jr3_D DNA polymerase III, del 96.0 0.059 2E-06 56.2 13.3 166 164-358 10-185 (343)
253 1rz3_A Hypothetical protein rb 95.9 0.0087 3E-07 57.2 5.6 44 155-198 2-48 (201)
254 3dm5_A SRP54, signal recogniti 95.7 0.048 1.7E-06 58.2 11.1 29 171-199 99-127 (443)
255 3ice_A Transcription terminati 95.7 0.022 7.4E-07 59.1 8.0 99 162-262 163-272 (422)
256 4akg_A Glutathione S-transfera 95.7 0.054 1.9E-06 70.5 13.4 88 163-262 1259-1347(2695)
257 2xxa_A Signal recognition part 95.7 0.049 1.7E-06 58.4 11.1 89 171-260 99-192 (433)
258 3c8u_A Fructokinase; YP_612366 95.6 0.011 3.6E-07 57.0 5.2 52 158-211 6-59 (208)
259 2bjv_A PSP operon transcriptio 95.5 0.01 3.6E-07 59.5 5.1 62 150-213 5-68 (265)
260 1g5t_A COB(I)alamin adenosyltr 95.5 0.011 3.9E-07 55.4 4.5 122 173-298 29-165 (196)
261 1qvr_A CLPB protein; coiled co 95.4 0.015 5.2E-07 68.8 6.4 47 151-197 558-613 (854)
262 3lda_A DNA repair protein RAD5 95.3 0.067 2.3E-06 56.7 10.5 91 171-262 177-284 (400)
263 3bh0_A DNAB-like replicative h 95.3 0.082 2.8E-06 54.3 10.9 52 171-226 67-118 (315)
264 1j8m_F SRP54, signal recogniti 95.3 0.056 1.9E-06 54.9 9.3 87 172-260 98-189 (297)
265 3kl4_A SRP54, signal recogniti 95.2 0.12 4E-06 55.3 11.8 89 171-261 96-189 (433)
266 1qhx_A CPT, protein (chloramph 95.2 0.012 4.1E-07 54.8 3.8 24 173-196 4-27 (178)
267 3kb2_A SPBC2 prophage-derived 95.1 0.013 4.3E-07 54.3 3.9 25 173-197 2-26 (173)
268 1g8p_A Magnesium-chelatase 38 95.1 0.012 4.2E-07 61.6 4.1 49 149-197 22-70 (350)
269 2dr3_A UPF0273 protein PH0284; 95.1 0.12 4E-06 50.8 11.0 48 171-222 22-69 (247)
270 3vaa_A Shikimate kinase, SK; s 95.1 0.015 5.1E-07 55.5 4.1 26 171-196 24-49 (199)
271 4a74_A DNA repair and recombin 95.0 0.073 2.5E-06 51.7 9.3 57 171-228 24-84 (231)
272 2b8t_A Thymidine kinase; deoxy 95.0 0.014 4.7E-07 56.5 3.8 112 170-296 10-126 (223)
273 1vma_A Cell division protein F 95.0 0.06 2.1E-06 54.8 8.6 88 171-261 103-196 (306)
274 1kgd_A CASK, peripheral plasma 94.9 0.016 5.6E-07 54.1 4.0 25 172-196 5-29 (180)
275 3uie_A Adenylyl-sulfate kinase 94.9 0.018 6.2E-07 54.9 4.3 29 169-197 22-50 (200)
276 3lw7_A Adenylate kinase relate 94.9 0.014 4.7E-07 54.2 3.2 20 173-192 2-21 (179)
277 1pzn_A RAD51, DNA repair and r 94.8 0.079 2.7E-06 55.3 9.2 92 171-263 130-243 (349)
278 1xjc_A MOBB protein homolog; s 94.8 0.022 7.6E-07 52.2 4.3 29 171-199 3-31 (169)
279 4eun_A Thermoresistant glucoki 94.8 0.019 6.7E-07 54.7 4.1 27 170-196 27-53 (200)
280 1zp6_A Hypothetical protein AT 94.8 0.016 5.4E-07 54.7 3.5 25 171-195 8-32 (191)
281 3trf_A Shikimate kinase, SK; a 94.7 0.019 6.5E-07 53.9 3.9 25 172-196 5-29 (185)
282 2ck3_D ATP synthase subunit be 94.7 0.2 7E-06 53.5 12.1 100 162-262 142-264 (482)
283 1odf_A YGR205W, hypothetical 3 94.7 0.032 1.1E-06 56.5 5.7 55 170-224 29-84 (290)
284 2ehv_A Hypothetical protein PH 94.7 0.068 2.3E-06 52.7 8.2 25 171-195 29-53 (251)
285 1sky_E F1-ATPase, F1-ATP synth 94.7 0.06 2.1E-06 57.7 8.0 89 172-261 151-255 (473)
286 2ffh_A Protein (FFH); SRP54, s 94.7 0.16 5.5E-06 54.0 11.3 87 171-260 97-189 (425)
287 2r44_A Uncharacterized protein 94.7 0.024 8.2E-07 58.9 4.9 44 151-196 27-70 (331)
288 2hf9_A Probable hydrogenase ni 94.7 0.029 1E-06 54.5 5.2 39 160-198 26-64 (226)
289 3fwy_A Light-independent proto 94.6 0.022 7.5E-07 58.4 4.4 41 170-212 46-86 (314)
290 1ly1_A Polynucleotide kinase; 94.6 0.019 6.4E-07 53.5 3.5 22 173-194 3-24 (181)
291 1kag_A SKI, shikimate kinase I 94.6 0.017 5.9E-07 53.5 3.2 24 173-196 5-28 (173)
292 3tau_A Guanylate kinase, GMP k 94.6 0.022 7.5E-07 54.7 4.0 28 170-197 6-33 (208)
293 3t61_A Gluconokinase; PSI-biol 94.5 0.019 6.6E-07 54.8 3.3 25 172-196 18-42 (202)
294 2rhm_A Putative kinase; P-loop 94.5 0.024 8.3E-07 53.5 3.9 25 172-196 5-29 (193)
295 3tqc_A Pantothenate kinase; bi 94.5 0.12 4E-06 52.9 9.3 27 171-197 91-117 (321)
296 1nks_A Adenylate kinase; therm 94.5 0.022 7.5E-07 53.7 3.6 26 173-198 2-27 (194)
297 2wsm_A Hydrogenase expression/ 94.4 0.029 1E-06 54.3 4.6 41 157-197 15-55 (221)
298 3tr0_A Guanylate kinase, GMP k 94.4 0.025 8.5E-07 54.0 4.0 25 172-196 7-31 (205)
299 1kht_A Adenylate kinase; phosp 94.4 0.025 8.5E-07 53.3 3.9 26 173-198 4-29 (192)
300 2ga8_A Hypothetical 39.9 kDa p 94.4 0.044 1.5E-06 56.4 6.0 44 155-198 3-50 (359)
301 1ls1_A Signal recognition part 94.4 0.17 5.9E-06 51.3 10.4 88 171-260 97-189 (295)
302 1ex7_A Guanylate kinase; subst 94.4 0.021 7.1E-07 53.5 3.2 24 173-196 2-25 (186)
303 3iij_A Coilin-interacting nucl 94.4 0.023 7.8E-07 53.0 3.5 25 172-196 11-35 (180)
304 3jvv_A Twitching mobility prot 94.4 0.016 5.3E-07 60.6 2.5 111 170-298 121-233 (356)
305 2qor_A Guanylate kinase; phosp 94.4 0.022 7.6E-07 54.5 3.4 26 171-196 11-36 (204)
306 1gvn_B Zeta; postsegregational 94.3 0.039 1.3E-06 55.8 5.4 26 171-196 32-57 (287)
307 1knq_A Gluconate kinase; ALFA/ 94.3 0.03 1E-06 51.9 4.2 25 172-196 8-32 (175)
308 3hws_A ATP-dependent CLP prote 94.3 0.044 1.5E-06 57.7 5.9 45 152-196 16-75 (363)
309 3ney_A 55 kDa erythrocyte memb 94.2 0.03 1E-06 52.9 4.0 27 171-197 18-44 (197)
310 2yvu_A Probable adenylyl-sulfa 94.2 0.032 1.1E-06 52.4 4.1 29 171-199 12-40 (186)
311 2ze6_A Isopentenyl transferase 94.2 0.028 9.5E-07 55.8 3.8 25 173-197 2-26 (253)
312 1y63_A LMAJ004144AAA protein; 94.2 0.032 1.1E-06 52.3 4.1 25 171-195 9-33 (184)
313 2c95_A Adenylate kinase 1; tra 94.2 0.032 1.1E-06 52.8 4.1 26 171-196 8-33 (196)
314 1via_A Shikimate kinase; struc 94.2 0.025 8.7E-07 52.5 3.3 25 173-197 5-29 (175)
315 3a00_A Guanylate kinase, GMP k 94.2 0.023 7.9E-07 53.4 3.1 25 173-197 2-26 (186)
316 2j41_A Guanylate kinase; GMP, 94.2 0.03 1E-06 53.5 3.9 26 171-196 5-30 (207)
317 2jaq_A Deoxyguanosine kinase; 94.1 0.03 1E-06 53.3 3.9 24 174-197 2-25 (205)
318 3nbx_X ATPase RAVA; AAA+ ATPas 94.1 0.024 8.4E-07 61.9 3.4 43 152-196 23-65 (500)
319 1lvg_A Guanylate kinase, GMP k 94.1 0.027 9.3E-07 53.6 3.3 26 172-197 4-29 (198)
320 1ye8_A Protein THEP1, hypothet 94.1 0.034 1.2E-06 51.8 3.9 25 174-198 2-26 (178)
321 3umf_A Adenylate kinase; rossm 94.0 0.036 1.2E-06 53.3 4.1 28 170-197 27-54 (217)
322 1tev_A UMP-CMP kinase; ploop, 94.0 0.033 1.1E-06 52.5 3.9 25 172-196 3-27 (196)
323 1zuh_A Shikimate kinase; alpha 94.0 0.036 1.2E-06 51.0 3.9 27 171-197 6-32 (168)
324 3asz_A Uridine kinase; cytidin 94.0 0.035 1.2E-06 53.3 4.0 27 171-197 5-31 (211)
325 2bdt_A BH3686; alpha-beta prot 94.0 0.03 1E-06 52.7 3.4 22 173-194 3-24 (189)
326 1cke_A CK, MSSA, protein (cyti 93.9 0.034 1.2E-06 54.0 3.9 25 172-196 5-29 (227)
327 1um8_A ATP-dependent CLP prote 93.9 0.059 2E-06 57.0 6.0 25 172-196 72-96 (376)
328 4a1f_A DNAB helicase, replicat 93.9 0.22 7.5E-06 51.3 10.0 52 171-226 45-96 (338)
329 4gt6_A Cell surface protein; l 93.9 1.4 4.6E-05 46.7 16.8 34 531-566 135-168 (394)
330 1ukz_A Uridylate kinase; trans 93.9 0.038 1.3E-06 52.7 4.1 26 171-196 14-39 (203)
331 3e70_C DPA, signal recognition 93.9 0.34 1.2E-05 49.8 11.4 58 170-229 127-185 (328)
332 3cmu_A Protein RECA, recombina 93.9 0.12 4E-06 65.2 9.2 85 170-261 1425-1515(2050)
333 2bbw_A Adenylate kinase 4, AK4 93.9 0.039 1.3E-06 54.5 4.2 26 171-196 26-51 (246)
334 3cm0_A Adenylate kinase; ATP-b 93.9 0.037 1.3E-06 51.9 3.8 25 172-196 4-28 (186)
335 2iyv_A Shikimate kinase, SK; t 93.9 0.029 9.8E-07 52.6 3.1 25 173-197 3-27 (184)
336 2plr_A DTMP kinase, probable t 93.8 0.039 1.3E-06 52.9 4.1 28 172-199 4-31 (213)
337 2j37_W Signal recognition part 93.8 0.45 1.5E-05 51.9 12.8 38 171-210 100-137 (504)
338 2cdn_A Adenylate kinase; phosp 93.8 0.044 1.5E-06 52.1 4.4 25 172-196 20-44 (201)
339 1uf9_A TT1252 protein; P-loop, 93.8 0.037 1.2E-06 52.7 3.7 26 170-195 6-31 (203)
340 2bwj_A Adenylate kinase 5; pho 93.8 0.039 1.3E-06 52.3 3.8 26 172-197 12-37 (199)
341 3l0o_A Transcription terminati 93.8 0.33 1.1E-05 50.3 10.8 52 161-213 163-216 (427)
342 1e6c_A Shikimate kinase; phosp 93.8 0.034 1.2E-06 51.4 3.3 25 173-197 3-27 (173)
343 3tlx_A Adenylate kinase 2; str 93.7 0.075 2.6E-06 52.3 6.0 27 170-196 27-53 (243)
344 2if2_A Dephospho-COA kinase; a 93.7 0.036 1.2E-06 52.9 3.4 22 173-194 2-23 (204)
345 1znw_A Guanylate kinase, GMP k 93.7 0.038 1.3E-06 52.9 3.6 26 171-196 19-44 (207)
346 1uj2_A Uridine-cytidine kinase 93.7 0.04 1.4E-06 54.6 3.9 28 170-197 20-47 (252)
347 1aky_A Adenylate kinase; ATP:A 93.7 0.046 1.6E-06 52.9 4.2 26 171-196 3-28 (220)
348 4gp7_A Metallophosphoesterase; 93.6 0.033 1.1E-06 51.5 3.0 22 171-192 8-29 (171)
349 1rj9_A FTSY, signal recognitio 93.6 0.053 1.8E-06 55.3 4.8 29 171-199 101-129 (304)
350 3a4m_A L-seryl-tRNA(SEC) kinas 93.6 0.042 1.4E-06 54.8 3.9 26 172-197 4-29 (260)
351 3aez_A Pantothenate kinase; tr 93.6 0.08 2.7E-06 54.2 6.1 42 170-211 88-129 (312)
352 2f1r_A Molybdopterin-guanine d 93.6 0.04 1.4E-06 50.9 3.4 27 173-199 3-29 (171)
353 1z6g_A Guanylate kinase; struc 93.6 0.036 1.2E-06 53.6 3.2 26 171-196 22-47 (218)
354 2vli_A Antibiotic resistance p 93.5 0.032 1.1E-06 52.1 2.7 26 172-197 5-30 (183)
355 2qt1_A Nicotinamide riboside k 93.5 0.041 1.4E-06 52.7 3.5 25 171-195 20-44 (207)
356 4h09_A Hypothetical leucine ri 93.5 0.33 1.1E-05 51.2 11.0 124 531-660 215-342 (379)
357 1s96_A Guanylate kinase, GMP k 93.5 0.045 1.6E-06 52.8 3.8 28 170-197 14-41 (219)
358 4gt6_A Cell surface protein; l 93.5 0.21 7E-06 53.1 9.4 79 578-659 262-342 (394)
359 1tue_A Replication protein E1; 93.5 0.071 2.4E-06 50.2 4.9 38 160-197 45-83 (212)
360 1nn5_A Similar to deoxythymidy 93.5 0.05 1.7E-06 52.3 4.1 33 171-204 8-40 (215)
361 2wwf_A Thymidilate kinase, put 93.5 0.048 1.6E-06 52.3 3.9 32 172-204 10-41 (212)
362 2p5t_B PEZT; postsegregational 93.5 0.061 2.1E-06 53.3 4.8 26 171-196 31-56 (253)
363 2pt5_A Shikimate kinase, SK; a 93.4 0.05 1.7E-06 49.9 3.8 24 174-197 2-25 (168)
364 2pbr_A DTMP kinase, thymidylat 93.4 0.049 1.7E-06 51.3 3.8 25 174-198 2-26 (195)
365 1htw_A HI0065; nucleotide-bind 93.4 0.051 1.8E-06 49.4 3.7 27 170-196 31-57 (158)
366 1qf9_A UMP/CMP kinase, protein 93.4 0.046 1.6E-06 51.5 3.6 25 172-196 6-30 (194)
367 4e22_A Cytidylate kinase; P-lo 93.4 0.052 1.8E-06 53.8 4.1 26 171-196 26-51 (252)
368 3rfe_A Platelet glycoprotein I 93.3 0.14 4.9E-06 44.7 6.4 54 607-663 12-67 (130)
369 2z0h_A DTMP kinase, thymidylat 93.3 0.13 4.3E-06 48.6 6.6 25 174-198 2-26 (197)
370 2jeo_A Uridine-cytidine kinase 93.3 0.052 1.8E-06 53.6 3.9 27 170-196 23-49 (245)
371 1np6_A Molybdopterin-guanine d 93.2 0.1 3.5E-06 48.2 5.6 28 171-198 5-32 (174)
372 1zak_A Adenylate kinase; ATP:A 93.2 0.048 1.7E-06 52.8 3.5 27 171-197 4-30 (222)
373 1fx0_B ATP synthase beta chain 93.2 0.28 9.4E-06 52.7 9.5 98 163-261 155-276 (498)
374 3upu_A ATP-dependent DNA helic 93.2 0.15 5E-06 55.6 7.7 42 157-199 31-72 (459)
375 1gtv_A TMK, thymidylate kinase 93.2 0.03 1E-06 53.8 2.0 26 173-198 1-26 (214)
376 1jjv_A Dephospho-COA kinase; P 93.1 0.047 1.6E-06 52.1 3.3 22 173-194 3-24 (206)
377 1zd8_A GTP:AMP phosphotransfer 93.1 0.053 1.8E-06 52.7 3.7 25 172-196 7-31 (227)
378 3p32_A Probable GTPase RV1496/ 93.1 0.12 4.1E-06 54.1 6.6 40 160-199 65-106 (355)
379 3fb4_A Adenylate kinase; psych 93.0 0.058 2E-06 51.9 3.8 23 174-196 2-24 (216)
380 3hjn_A DTMP kinase, thymidylat 93.0 0.23 7.9E-06 46.9 7.9 50 174-225 2-51 (197)
381 2grj_A Dephospho-COA kinase; T 93.0 0.059 2E-06 50.8 3.6 26 171-196 11-36 (192)
382 1g41_A Heat shock protein HSLU 93.0 0.077 2.6E-06 56.7 4.9 47 151-197 15-75 (444)
383 1m7g_A Adenylylsulfate kinase; 92.9 0.069 2.4E-06 51.2 4.2 28 170-197 23-50 (211)
384 3cf2_A TER ATPase, transitiona 92.9 0.17 5.8E-06 58.4 8.0 93 150-263 476-582 (806)
385 2v54_A DTMP kinase, thymidylat 92.9 0.067 2.3E-06 50.9 4.0 25 172-196 4-28 (204)
386 2pez_A Bifunctional 3'-phospho 92.8 0.073 2.5E-06 49.5 4.1 28 171-198 4-31 (179)
387 2i3b_A HCR-ntpase, human cance 92.8 0.06 2.1E-06 50.6 3.5 25 173-197 2-26 (189)
388 3end_A Light-independent proto 92.8 0.13 4.4E-06 52.7 6.2 43 169-213 38-80 (307)
389 3rfe_A Platelet glycoprotein I 92.7 0.2 7E-06 43.6 6.5 14 560-573 33-46 (130)
390 3b9q_A Chloroplast SRP recepto 92.6 0.077 2.6E-06 54.0 4.2 28 171-198 99-126 (302)
391 3r20_A Cytidylate kinase; stru 92.6 0.079 2.7E-06 51.5 4.0 25 172-196 9-33 (233)
392 3dl0_A Adenylate kinase; phosp 92.6 0.069 2.4E-06 51.4 3.6 23 174-196 2-24 (216)
393 3bgw_A DNAB-like replicative h 92.5 0.44 1.5E-05 51.3 10.2 50 171-224 196-245 (444)
394 3nwj_A ATSK2; P loop, shikimat 92.5 0.068 2.3E-06 52.7 3.5 26 172-197 48-73 (250)
395 2onk_A Molybdate/tungstate ABC 92.5 0.073 2.5E-06 52.2 3.7 25 170-195 23-47 (240)
396 3be4_A Adenylate kinase; malar 92.4 0.072 2.5E-06 51.4 3.5 25 172-196 5-29 (217)
397 3sr0_A Adenylate kinase; phosp 92.4 0.082 2.8E-06 50.4 3.8 23 174-196 2-24 (206)
398 2q6t_A DNAB replication FORK h 92.4 0.44 1.5E-05 51.5 10.1 53 171-226 199-251 (444)
399 3ake_A Cytidylate kinase; CMP 92.4 0.082 2.8E-06 50.4 3.9 25 173-197 3-27 (208)
400 3lnc_A Guanylate kinase, GMP k 92.4 0.051 1.8E-06 53.0 2.4 25 172-196 27-52 (231)
401 2r6a_A DNAB helicase, replicat 92.4 0.59 2E-05 50.6 11.1 51 171-224 202-252 (454)
402 1cr0_A DNA primase/helicase; R 92.3 0.24 8.2E-06 50.3 7.5 53 170-225 33-85 (296)
403 3vkg_A Dynein heavy chain, cyt 92.3 0.58 2E-05 61.8 12.5 90 161-262 1294-1385(3245)
404 3tif_A Uncharacterized ABC tra 92.3 0.078 2.7E-06 51.8 3.6 25 171-195 30-54 (235)
405 1vht_A Dephospho-COA kinase; s 92.3 0.086 2.9E-06 50.8 3.9 23 172-194 4-26 (218)
406 3k1j_A LON protease, ATP-depen 92.3 0.089 3E-06 59.5 4.5 47 149-197 39-85 (604)
407 1ak2_A Adenylate kinase isoenz 92.2 0.1 3.4E-06 51.0 4.3 26 172-197 16-41 (233)
408 3lv8_A DTMP kinase, thymidylat 92.2 0.22 7.6E-06 48.5 6.6 36 172-208 27-62 (236)
409 3d3q_A TRNA delta(2)-isopenten 92.1 0.082 2.8E-06 54.3 3.6 24 173-196 8-31 (340)
410 1sq5_A Pantothenate kinase; P- 92.1 0.084 2.9E-06 54.0 3.7 28 170-197 78-105 (308)
411 1q57_A DNA primase/helicase; d 92.1 0.55 1.9E-05 51.7 10.6 53 171-226 241-293 (503)
412 1yrb_A ATP(GTP)binding protein 92.1 0.11 3.6E-06 51.8 4.4 27 171-197 13-39 (262)
413 2xb4_A Adenylate kinase; ATP-b 92.1 0.094 3.2E-06 50.8 3.8 23 174-196 2-24 (223)
414 2f6r_A COA synthase, bifunctio 92.1 0.084 2.9E-06 53.2 3.6 24 171-194 74-97 (281)
415 3cmu_A Protein RECA, recombina 92.1 0.38 1.3E-05 60.7 10.0 86 171-263 382-473 (2050)
416 3io3_A DEHA2D07832P; chaperone 92.0 0.21 7E-06 51.9 6.6 49 168-218 14-64 (348)
417 2og2_A Putative signal recogni 92.0 0.1 3.5E-06 54.3 4.2 28 171-198 156-183 (359)
418 2cbz_A Multidrug resistance-as 91.9 0.081 2.8E-06 51.8 3.2 26 171-196 30-55 (237)
419 1a7j_A Phosphoribulokinase; tr 91.9 0.061 2.1E-06 54.5 2.3 27 171-197 4-30 (290)
420 4tmk_A Protein (thymidylate ki 91.9 0.27 9.3E-06 47.0 6.8 53 172-225 3-55 (213)
421 1zu4_A FTSY; GTPase, signal re 91.9 0.11 3.9E-06 53.2 4.4 29 171-199 104-132 (320)
422 1e4v_A Adenylate kinase; trans 91.9 0.094 3.2E-06 50.4 3.6 23 174-196 2-24 (214)
423 2pcj_A ABC transporter, lipopr 91.9 0.076 2.6E-06 51.5 2.9 25 171-195 29-53 (224)
424 4eaq_A DTMP kinase, thymidylat 91.9 0.18 6E-06 49.1 5.5 28 171-198 25-52 (229)
425 1b0u_A Histidine permease; ABC 91.9 0.084 2.9E-06 52.5 3.3 25 171-195 31-55 (262)
426 3iqw_A Tail-anchored protein t 91.8 0.22 7.6E-06 51.3 6.4 50 167-218 11-60 (334)
427 3b85_A Phosphate starvation-in 91.8 0.073 2.5E-06 50.9 2.6 24 172-195 22-45 (208)
428 3crm_A TRNA delta(2)-isopenten 91.8 0.098 3.3E-06 53.4 3.6 24 173-196 6-29 (323)
429 2zu0_C Probable ATP-dependent 91.7 0.11 3.7E-06 51.9 3.8 26 170-195 44-69 (267)
430 2olj_A Amino acid ABC transpor 91.6 0.092 3.1E-06 52.2 3.3 26 170-195 48-73 (263)
431 2v9p_A Replication protein E1; 91.6 0.11 3.8E-06 52.7 3.9 27 170-196 124-150 (305)
432 1pgv_A TMD-1, tropomodulin TMD 91.6 0.11 3.7E-06 48.9 3.5 80 556-635 39-135 (197)
433 1pgv_A TMD-1, tropomodulin TMD 91.6 0.14 4.8E-06 48.1 4.3 103 532-635 40-166 (197)
434 2eyu_A Twitching motility prot 91.6 0.18 6.1E-06 50.1 5.3 110 170-298 23-135 (261)
435 3exa_A TRNA delta(2)-isopenten 91.6 0.11 3.7E-06 52.5 3.7 25 172-196 3-27 (322)
436 3cmw_A Protein RECA, recombina 91.5 0.44 1.5E-05 59.3 9.6 86 171-263 382-473 (1706)
437 3vr4_D V-type sodium ATPase su 91.4 0.19 6.6E-06 53.3 5.5 99 162-261 140-258 (465)
438 3gfo_A Cobalt import ATP-bindi 91.4 0.11 3.7E-06 52.1 3.5 25 171-195 33-57 (275)
439 3ld9_A DTMP kinase, thymidylat 91.4 0.24 8.4E-06 47.6 5.9 30 169-198 18-47 (223)
440 3foz_A TRNA delta(2)-isopenten 91.4 0.13 4.6E-06 51.8 4.1 26 171-196 9-34 (316)
441 2yhs_A FTSY, cell division pro 91.4 0.14 4.8E-06 55.3 4.5 42 171-215 292-333 (503)
442 2d2e_A SUFC protein; ABC-ATPas 91.4 0.11 3.8E-06 51.2 3.6 25 171-195 28-52 (250)
443 1vpl_A ABC transporter, ATP-bi 91.4 0.1 3.5E-06 51.7 3.3 25 171-195 40-64 (256)
444 1mv5_A LMRA, multidrug resista 91.4 0.1 3.4E-06 51.4 3.2 25 171-195 27-51 (243)
445 2ghi_A Transport protein; mult 91.3 0.1 3.6E-06 51.8 3.2 25 171-195 45-69 (260)
446 2pze_A Cystic fibrosis transme 91.2 0.1 3.6E-06 50.7 3.1 26 171-196 33-58 (229)
447 1ji0_A ABC transporter; ATP bi 91.2 0.1 3.5E-06 51.2 3.1 25 171-195 31-55 (240)
448 4g1u_C Hemin import ATP-bindin 91.2 0.1 3.5E-06 52.0 3.1 26 171-196 36-61 (266)
449 1sgw_A Putative ABC transporte 91.2 0.089 3E-06 50.5 2.5 25 171-195 34-58 (214)
450 1oix_A RAS-related protein RAB 91.2 0.12 4E-06 48.7 3.3 25 172-196 29-53 (191)
451 2ixe_A Antigen peptide transpo 91.2 0.11 3.6E-06 52.1 3.2 27 170-196 43-69 (271)
452 3cmw_A Protein RECA, recombina 91.1 0.46 1.6E-05 59.2 9.3 86 171-263 1430-1521(1706)
453 1g6h_A High-affinity branched- 91.1 0.1 3.6E-06 51.7 3.1 25 171-195 32-56 (257)
454 4edh_A DTMP kinase, thymidylat 91.1 0.37 1.3E-05 46.1 6.9 32 172-204 6-37 (213)
455 2ff7_A Alpha-hemolysin translo 91.1 0.11 3.7E-06 51.2 3.1 26 171-196 34-59 (247)
456 3vr4_A V-type sodium ATPase ca 91.1 0.55 1.9E-05 51.1 8.7 58 162-223 221-280 (600)
457 1cp2_A CP2, nitrogenase iron p 91.0 0.26 9E-06 49.1 6.0 39 173-213 2-40 (269)
458 2yz2_A Putative ABC transporte 90.9 0.12 4E-06 51.7 3.2 25 171-195 32-56 (266)
459 3mfy_A V-type ATP synthase alp 90.9 0.71 2.4E-05 50.1 9.4 58 162-223 216-275 (588)
460 4h09_A Hypothetical leucine ri 90.9 0.76 2.6E-05 48.3 9.9 115 530-650 237-355 (379)
461 1q3t_A Cytidylate kinase; nucl 90.9 0.17 5.7E-06 49.5 4.2 26 171-196 15-40 (236)
462 3a8t_A Adenylate isopentenyltr 90.9 0.12 4.2E-06 52.8 3.3 26 171-196 39-64 (339)
463 1ltq_A Polynucleotide kinase; 90.8 0.13 4.4E-06 52.4 3.5 23 173-195 3-25 (301)
464 1g8f_A Sulfate adenylyltransfe 90.8 0.25 8.6E-06 53.8 5.9 45 154-198 375-421 (511)
465 2qi9_C Vitamin B12 import ATP- 90.7 0.12 4.2E-06 50.8 3.1 26 171-196 25-50 (249)
466 2r8r_A Sensor protein; KDPD, P 90.6 0.2 7E-06 48.0 4.4 37 174-212 8-44 (228)
467 2nq2_C Hypothetical ABC transp 90.6 0.13 4.4E-06 50.9 3.1 25 171-195 30-54 (253)
468 2dyk_A GTP-binding protein; GT 90.6 0.16 5.5E-06 45.8 3.6 23 173-195 2-24 (161)
469 3kjh_A CO dehydrogenase/acetyl 90.6 0.29 1E-05 48.0 5.9 42 175-218 3-44 (254)
470 2afh_E Nitrogenase iron protei 90.6 0.31 1.1E-05 49.2 6.1 40 172-213 2-41 (289)
471 2f9l_A RAB11B, member RAS onco 90.6 0.15 5.1E-06 48.2 3.5 23 173-195 6-28 (199)
472 1svm_A Large T antigen; AAA+ f 90.6 0.16 5.3E-06 53.4 3.9 27 170-196 167-193 (377)
473 2ihy_A ABC transporter, ATP-bi 90.5 0.13 4.5E-06 51.6 3.1 26 171-196 46-71 (279)
474 2wji_A Ferrous iron transport 90.4 0.15 5.2E-06 46.5 3.3 22 173-194 4-25 (165)
475 3zvl_A Bifunctional polynucleo 90.3 0.12 4.1E-06 55.3 2.8 27 170-196 256-282 (416)
476 2zej_A Dardarin, leucine-rich 90.3 0.14 4.8E-06 47.7 2.9 21 174-194 4-24 (184)
477 2ged_A SR-beta, signal recogni 90.3 0.3 1E-05 45.6 5.3 25 171-195 47-71 (193)
478 3sop_A Neuronal-specific septi 90.2 0.15 5.2E-06 50.9 3.3 24 174-197 4-27 (270)
479 2c61_A A-type ATP synthase non 90.2 0.24 8.1E-06 53.0 4.9 98 162-260 141-258 (469)
480 1nlf_A Regulatory protein REPA 90.2 0.16 5.3E-06 51.2 3.4 27 171-197 29-55 (279)
481 3eph_A TRNA isopentenyltransfe 90.1 0.17 5.8E-06 53.1 3.6 25 173-197 3-27 (409)
482 1u0j_A DNA replication protein 90.1 0.31 1.1E-05 48.0 5.4 37 160-196 90-128 (267)
483 2ocp_A DGK, deoxyguanosine kin 90.1 0.18 6.1E-06 49.4 3.7 25 172-196 2-26 (241)
484 3nh6_A ATP-binding cassette SU 90.1 0.14 4.8E-06 52.0 3.0 27 170-196 78-104 (306)
485 3cwq_A Para family chromosome 89.9 0.47 1.6E-05 45.2 6.4 43 174-219 2-45 (209)
486 3tui_C Methionine import ATP-b 89.9 0.19 6.5E-06 52.2 3.8 26 170-195 52-77 (366)
487 2qmh_A HPR kinase/phosphorylas 89.9 0.13 4.6E-06 48.0 2.4 25 172-196 34-58 (205)
488 3fvq_A Fe(3+) IONS import ATP- 89.9 0.18 6.1E-06 52.4 3.6 26 171-196 29-54 (359)
489 3cr8_A Sulfate adenylyltranfer 89.8 0.3 1E-05 54.0 5.5 44 155-198 350-395 (552)
490 2v3c_C SRP54, signal recogniti 89.8 0.15 5.1E-06 54.7 3.0 28 172-199 99-126 (432)
491 1tq4_A IIGP1, interferon-induc 89.7 0.22 7.6E-06 52.8 4.3 25 170-194 67-91 (413)
492 1nij_A Hypothetical protein YJ 89.7 0.15 5.2E-06 52.4 2.9 26 171-196 3-28 (318)
493 2ce2_X GTPase HRAS; signaling 89.7 0.17 6E-06 45.6 3.1 23 174-196 5-27 (166)
494 2orw_A Thymidine kinase; TMTK, 89.7 0.26 8.9E-06 46.0 4.3 28 172-199 3-30 (184)
495 2bbs_A Cystic fibrosis transme 89.6 0.16 5.6E-06 51.2 3.0 26 171-196 63-88 (290)
496 4dzz_A Plasmid partitioning pr 89.6 0.36 1.2E-05 45.7 5.4 44 173-218 2-46 (206)
497 2pjz_A Hypothetical protein ST 89.6 0.16 5.5E-06 50.4 2.9 24 172-195 30-53 (263)
498 2vp4_A Deoxynucleoside kinase; 89.6 0.13 4.5E-06 50.0 2.2 25 171-195 19-43 (230)
499 1z2a_A RAS-related protein RAB 89.5 0.19 6.6E-06 45.6 3.2 23 173-195 6-28 (168)
500 3rlf_A Maltose/maltodextrin im 89.2 0.23 7.8E-06 52.0 3.8 26 171-196 28-53 (381)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.2e-46 Score=427.00 Aligned_cols=307 Identities=16% Similarity=0.132 Sum_probs=244.7
Q ss_pred CCchHHHHHHHHHHccC---CccEEEEEcCCCChHHHHHHHHHH--HHhccCCCCeEEEEEEccCC--CHHHHHHHHHHH
Q 037947 154 ESRMPTFQDIMEALKDD---NINVIGIYGIGGVGKTTLVKQVAR--RVMEDKLFDEVVMVVVSQKP--DYKAIQNEIAGA 226 (780)
Q Consensus 154 ~gr~~~~~~l~~~L~~~---~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~~~~i~~~ 226 (780)
+||++++++|.++|..+ ..++|+|+||||+||||||+.+|+ +.+.+.+|++++||++++.+ ++.+++..|+.+
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 49999999999999743 679999999999999999999998 56778899999999999985 899999999999
Q ss_pred cCCCcC-------CCCCHHHHHHHHHHHhccC-cEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhH
Q 037947 227 LGLFLG-------EHEDVSERAHLLRQRLKAS-RVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDL 298 (780)
Q Consensus 227 l~~~~~-------~~~~~~~~~~~l~~~L~~k-r~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v 298 (780)
++.... +..+.......+++.|+++ ||||||||||+..++ . + + ..+||+||||||+..+
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~----~-------~-~~~gs~ilvTTR~~~v 277 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-R----W-------A-QELRLRCLVTTRDVEI 277 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-H----H-------H-HHTTCEEEEEESBGGG
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-c----c-------c-ccCCCEEEEEcCCHHH
Confidence 986522 1123456788999999996 999999999998755 1 1 2 2379999999999998
Q ss_pred HhhhcC-CcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHHhCCChhHHHHHHHHHh
Q 037947 299 LYNEMN-SQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATALRNKSLFVWKDALLQLR 377 (780)
Q Consensus 299 ~~~~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~~~~~~l~ 377 (780)
+.. ++ ....|++++|+.++||+||.+.++....++.+++++++|+++|+|+||||+++|+.++.++ |+.+ +.+.
T Consensus 278 ~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~ 352 (549)
T 2a5y_B 278 SNA-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLN 352 (549)
T ss_dssp GGG-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHH
T ss_pred HHH-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhH
Confidence 643 33 4467999999999999999999986554577888999999999999999999999998764 4333 2222
Q ss_pred cCCCCCCCCchhhhhccccccccccCchhHHHHHH-----------hhcccCCCCCcChhHHHHHHhcc--CcCCCc---
Q 037947 378 SSNHRDISGLDSTVYSSVKLSYNFLKSLEAQSLFL-----------LCSLLNDGSRIPIDDLLRCAMGL--DLFSDV--- 441 (780)
Q Consensus 378 ~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl-----------~~s~fp~~~~i~~~~Li~~W~ae--g~i~~~--- 441 (780)
...... ....+..++.+||+.||++ +|.||+ |||+||+++.|+ +++|+|+ ||+...
T Consensus 353 ~~l~~~---~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~ 424 (549)
T 2a5y_B 353 NKLESR---GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEE 424 (549)
T ss_dssp HHHHHH---CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------C
T ss_pred HHhhcc---cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCC
Confidence 211100 1246889999999999996 999999 999999999999 8899999 999643
Q ss_pred ccHHHHHHHHHHHHHHHHhhcccccCC--CCCceeechhhHHHHHHHhhcc
Q 037947 442 FSLEEARSRMHHLIDDLQASCLLLDGD--NKDDVKMHDVIHDIAVSTARDK 490 (780)
Q Consensus 442 ~~~~~~~~~~~~~~~~L~~~~l~~~~~--~~~~~~mHdlv~d~~~~~~~~~ 490 (780)
.+.+++.+ ++++|+++||++... ...+|+|||+||+||++++.++
T Consensus 425 ~~~~~~~~----~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~ 471 (549)
T 2a5y_B 425 QLDDEVAD----RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQ 471 (549)
T ss_dssp CCTHHHHH----HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTH
T ss_pred CCHHHHHH----HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHH
Confidence 23344332 789999999998642 3467999999999999988554
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=1.5e-38 Score=363.09 Aligned_cols=282 Identities=17% Similarity=0.192 Sum_probs=226.7
Q ss_pred cCCchHHHHHHHHHHcc-CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCe-EEEEEEccCCCHHHHHHHHHHHcCC-
Q 037947 153 FESRMPTFQDIMEALKD-DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDE-VVMVVVSQKPDYKAIQNEIAGALGL- 229 (780)
Q Consensus 153 ~~gr~~~~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~~~~i~~~l~~- 229 (780)
.+||+.++++|.++|.+ +..++|+|+||||+||||||+.+|++.+++.+|+. ++|+++++.++...++..|++.++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 48999999999999985 56899999999999999999999998766777986 9999999999988888888775422
Q ss_pred --CcCCC--------CCHHHHHHHHHHHh---ccCcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecch
Q 037947 230 --FLGEH--------EDVSERAHLLRQRL---KASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRK 296 (780)
Q Consensus 230 --~~~~~--------~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~ 296 (780)
..... .+.+.....+++.| .++|+||||||||+.+.|+.+ + +||+||||||++
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-----------~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-----------N---LSCKILLTTRFK 275 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-----------H---SSCCEEEECSCS
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-----------C---CCeEEEEeccCh
Confidence 11110 11344566677766 679999999999998777653 2 689999999999
Q ss_pred hHHhhhcCCcceEEcC------CCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHHhCC--ChhH
Q 037947 297 DLLYNEMNSQKNFLIN------VLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATALRNK--SLFV 368 (780)
Q Consensus 297 ~v~~~~~~~~~~~~l~------~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~--~~~~ 368 (780)
.++.. +.....|+++ +|+.+|||+||.+..+.. ..++..+| |+|+||||+++|+.|+.+ +.++
T Consensus 276 ~Va~~-l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ee 346 (1221)
T 1vt4_I 276 QVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDN 346 (1221)
T ss_dssp HHHHH-HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHH
T ss_pred HHHHh-cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHH
Confidence 88632 2223456676 999999999999986432 22344444 999999999999999976 7788
Q ss_pred HHHHHHHHhcCCCCCCCCchhhhhccccccccccCchhH-HHHHHhhcccCCCCCcChhHHHHHHhccCcCCCcccHHHH
Q 037947 369 WKDALLQLRSSNHRDISGLDSTVYSSVKLSYNFLKSLEA-QSLFLLCSLLNDGSRIPIDDLLRCAMGLDLFSDVFSLEEA 447 (780)
Q Consensus 369 w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~-k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~ 447 (780)
|... ....+..+|.+||+.||++ . |.||+|||+||+++.|+.+.++.+|+++|. ++
T Consensus 347 W~~~--------------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-------ed- 403 (1221)
T 1vt4_I 347 WKHV--------------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-------SD- 403 (1221)
T ss_dssp HHHC--------------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS-------HH-
T ss_pred HhcC--------------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH-------HH-
Confidence 8652 1357899999999999996 7 999999999999999999999999999881 22
Q ss_pred HHHHHHHHHHHHhhcccccCCCCCceeechhhHHHH
Q 037947 448 RSRMHHLIDDLQASCLLLDGDNKDDVKMHDVIHDIA 483 (780)
Q Consensus 448 ~~~~~~~~~~L~~~~l~~~~~~~~~~~mHdlv~d~~ 483 (780)
..+++++|+++||++..+...+|+|||++++++
T Consensus 404 ---Ae~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 404 ---VMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp ---HHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred ---HHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 345789999999998765567899999999965
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.6e-38 Score=396.00 Aligned_cols=314 Identities=21% Similarity=0.291 Sum_probs=252.5
Q ss_pred cCCccccCCchHHHHHHHHHHc--cCCccEEEEEcCCCChHHHHHHHHHHHHhc-cC-CCCeEEEEEEccCCC--HHHHH
Q 037947 147 LRGYEQFESRMPTFQDIMEALK--DDNINVIGIYGIGGVGKTTLVKQVARRVME-DK-LFDEVVMVVVSQKPD--YKAIQ 220 (780)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~-~F~~~~wv~vs~~~~--~~~~~ 220 (780)
+.+...|+||++++++|.++|. +++.++|+|+||||+||||||+++|++... .. +|+.++||++++..+ ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 3456679999999999999996 467899999999999999999999987643 33 456788999998543 44456
Q ss_pred HHHHHHcCCCcC----CCCCHHHHHHHHHHHhccC--cEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEec
Q 037947 221 NEIAGALGLFLG----EHEDVSERAHLLRQRLKAS--RVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSR 294 (780)
Q Consensus 221 ~~i~~~l~~~~~----~~~~~~~~~~~l~~~L~~k--r~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr 294 (780)
..++..+..... ...+.++....++..+.++ |+||||||||+..+|..+ .+||+||||||
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~--------------~~~~~ilvTtR 265 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF--------------DNQCQILLTTR 265 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT--------------CSSCEEEEEES
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh--------------cCCCEEEEEcC
Confidence 677777765332 2234677888899999887 999999999998766542 46889999999
Q ss_pred chhHHhhhcCCcceEEcCC-CChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHHhCCChhHHHHHH
Q 037947 295 RKDLLYNEMNSQKNFLINV-LSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATALRNKSLFVWKDAL 373 (780)
Q Consensus 295 ~~~v~~~~~~~~~~~~l~~-L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~~~~ 373 (780)
++.++.........+++++ |+.++|++||...++. ..+.+.+++++|+++|+|+||||+++|++|+.++ .+|...+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~--~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l 342 (1249)
T 3sfz_A 266 DKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM--KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYL 342 (1249)
T ss_dssp STTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTS--CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHH
T ss_pred CHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCC--ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHH
Confidence 9988644456677899996 9999999999998853 2345567899999999999999999999999776 4799999
Q ss_pred HHHhcCCCCCC----CCchhhhhccccccccccCchhHHHHHHhhcccCCCCCcChhHHHHHHhccCcCCCcccHHHHHH
Q 037947 374 LQLRSSNHRDI----SGLDSTVYSSVKLSYNFLKSLEAQSLFLLCSLLNDGSRIPIDDLLRCAMGLDLFSDVFSLEEARS 449 (780)
Q Consensus 374 ~~l~~~~~~~~----~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~~~ 449 (780)
+.+........ ....+.+..++.+||+.||++ .|.||+|||+||+++.|+++.++.+|.+++ ++
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~--------~~--- 410 (1249)
T 3sfz_A 343 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET--------EE--- 410 (1249)
T ss_dssp HHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH--------HH---
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH--------HH---
Confidence 98876543322 122357999999999999996 999999999999999999999999997763 23
Q ss_pred HHHHHHHHHHhhcccccCC--CCCceeechhhHHHHHHHhhcc
Q 037947 450 RMHHLIDDLQASCLLLDGD--NKDDVKMHDVIHDIAVSTARDK 490 (780)
Q Consensus 450 ~~~~~~~~L~~~~l~~~~~--~~~~~~mHdlv~d~~~~~~~~~ 490 (780)
+.+++++|++++|++... ...+|+||++||++++..+.++
T Consensus 411 -~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 411 -VEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp -HHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred -HHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 345788899999997542 2336999999999999987443
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=330.60 Aligned_cols=307 Identities=21% Similarity=0.310 Sum_probs=236.3
Q ss_pred CCccccCCchHHHHHHHHHHc--cCCccEEEEEcCCCChHHHHHHHHHHHHhc-cCCC-CeEEEEEEccCCCHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALK--DDNINVIGIYGIGGVGKTTLVKQVARRVME-DKLF-DEVVMVVVSQKPDYKAIQNEI 223 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~~~~~i 223 (780)
..+..|+||+.++++|.++|. .++.++|+|+||||+||||||..++++... ..+| +.++|++++.. +...++..+
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l 199 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKL 199 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHH
T ss_pred CCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHH
Confidence 345679999999999999997 356789999999999999999999987654 4568 58999999876 333444443
Q ss_pred ---HHHcCCC----cCCCCCHHHHHHHHHHHhcc--CcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEec
Q 037947 224 ---AGALGLF----LGEHEDVSERAHLLRQRLKA--SRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSR 294 (780)
Q Consensus 224 ---~~~l~~~----~~~~~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr 294 (780)
+..++.. .....+.+.....+.+.+.+ +++||||||+|+...++. ..+|++||||||
T Consensus 200 ~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~--------------l~~~~~ilvTsR 265 (591)
T 1z6t_A 200 QNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKA--------------FDSQCQILLTTR 265 (591)
T ss_dssp HHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHT--------------TCSSCEEEEEES
T ss_pred HHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHH--------------hcCCCeEEEECC
Confidence 4455421 11223466777888888887 789999999998655432 245889999999
Q ss_pred chhHHhhhcCCcceEEc---CCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHHhCCChhHHHH
Q 037947 295 RKDLLYNEMNSQKNFLI---NVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATALRNKSLFVWKD 371 (780)
Q Consensus 295 ~~~v~~~~~~~~~~~~l---~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~~~~~~~w~~ 371 (780)
+..++.. .. ...+++ ++|+.+++++||...++.. .....+.+.+|+++|+|+||||..+|+.++... .+|..
T Consensus 266 ~~~~~~~-~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~ 340 (591)
T 1z6t_A 266 DKSVTDS-VM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEY 340 (591)
T ss_dssp CGGGGTT-CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHH
T ss_pred CcHHHHh-cC-CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHH
Confidence 9987532 11 334444 5899999999999998742 222346789999999999999999999998764 37999
Q ss_pred HHHHHhcCCCCCC----CCchhhhhccccccccccCchhHHHHHHhhcccCCCCCcChhHHHHHHhccCcCCCcccHHHH
Q 037947 372 ALLQLRSSNHRDI----SGLDSTVYSSVKLSYNFLKSLEAQSLFLLCSLLNDGSRIPIDDLLRCAMGLDLFSDVFSLEEA 447 (780)
Q Consensus 372 ~~~~l~~~~~~~~----~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i~~~~~~~~~ 447 (780)
.++.+........ ......+..++..||+.||++ .|.||++||+||+++.|+.+.+..+|.+++ ++
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~--------~~- 410 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET--------EE- 410 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH--------HH-
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH--------HH-
Confidence 9888875442211 123457899999999999996 999999999999999999999999997642 22
Q ss_pred HHHHHHHHHHHHhhcccccC--CCCCceeechhhHHHHHHHh
Q 037947 448 RSRMHHLIDDLQASCLLLDG--DNKDDVKMHDVIHDIAVSTA 487 (780)
Q Consensus 448 ~~~~~~~~~~L~~~~l~~~~--~~~~~~~mHdlv~d~~~~~~ 487 (780)
..++++.|++++|++.. +...+|+||++||++++...
T Consensus 411 ---~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 411 ---VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp ---HHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred ---HHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 34578889999999743 23457999999999999884
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=6.8e-19 Score=186.18 Aligned_cols=210 Identities=21% Similarity=0.298 Sum_probs=171.3
Q ss_pred CCceEEEccCCCCccCCCcc-CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEcc
Q 037947 511 KDPIAISLPCRDIQELPERL-ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFE 589 (780)
Q Consensus 511 ~~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 589 (780)
..++.|.+.++.+..+|... .+++|+.|++++|.+. .+|..+ .++++|++|++++|.++.+|..++.+++|++|+++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 46899999999999998755 7999999999999988 788764 78999999999999999999999999999999999
Q ss_pred CccCCC--ccccc---------ccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeec
Q 037947 590 CCVLGD--VATVG---------ALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYM 658 (780)
Q Consensus 590 ~~~~~~--~~~i~---------~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 658 (780)
+|.+.. |..++ .+.+|++|++++|.++.+|..++.+++|++|++++ +.++.+|+. ++.+++|++|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~-l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPA-IHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGG-GGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchh-hccCCCCCEEEC
Confidence 987544 55554 49999999999999999999999999999999999 678888664 899999999999
Q ss_pred cCCCCccccccCCccchhhhcCCCCCCEEEeeccC-CCCCCccc-cccCccEEEEEecCc----ccccccccccceeEe
Q 037947 659 GNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILD-AQVMPREL-FSVGLERYKIFLGDV----WSWTGKYETSRTLKL 731 (780)
Q Consensus 659 ~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~-~~~~~~~~-~~~~L~~L~i~~~~~----~~~~~~~~~l~~l~L 731 (780)
++|.....++ ..+..+++|+.|+++.|. ...+|..+ .+++|+.|++..+.. +.++..++.++.+.+
T Consensus 237 s~n~~~~~~p-------~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 237 RGCTALRNYP-------PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp TTCTTCCBCC-------CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred cCCcchhhhH-------HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 9986543333 457788999999999865 55667666 778888888876442 344444454444443
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.80 E-value=2.2e-19 Score=188.78 Aligned_cols=242 Identities=15% Similarity=0.222 Sum_probs=192.9
Q ss_pred CCceEEEccCCCCcc---CCCcc-CCCCccEEEecc-CccccccCchhhcCCCCccEEEecCCCCC-CCCccccCCCCCC
Q 037947 511 KDPIAISLPCRDIQE---LPERL-ECPKLKLFFLFS-KKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGCLINLQ 584 (780)
Q Consensus 511 ~~~~~l~l~~~~~~~---~~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~ 584 (780)
.++++|.+.++.+.. +|... .+++|++|++++ |.+.+.+|..+ .+++.|++|++++|.++ .+|..+..+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 358999999998873 66544 899999999995 88887888764 78999999999999998 7899999999999
Q ss_pred EEEccCccCCC--cccccccCCCcEEEeecCCCC-ccChhhcCCC-CCCEEecCCCCCCcccCccccCCCcccceeeccC
Q 037947 585 TLSFECCVLGD--VATVGALKKLVILSFRNSHIE-QLPEEIGQLT-RLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGN 660 (780)
Q Consensus 585 ~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~-~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 660 (780)
+|++++|.+.. |..++.+++|++|++++|.+. .+|..++.++ +|++|++++ +.+....|..++.++ |++|++++
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~-N~l~~~~~~~~~~l~-L~~L~Ls~ 206 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISR-NRLTGKIPPTFANLN-LAFVDLSR 206 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCS-SEEEEECCGGGGGCC-CSEEECCS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcC-CeeeccCChHHhCCc-ccEEECcC
Confidence 99999999874 778999999999999999998 7899999998 999999998 567655566688887 99999999
Q ss_pred CCCccccccCCccchhhhcCCCCCCEEEeeccCCCCCCccc-cccCccEEEEEecCc----ccccccccccceeEeecCC
Q 037947 661 SFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPREL-FSVGLERYKIFLGDV----WSWTGKYETSRTLKLKLDN 735 (780)
Q Consensus 661 ~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~i~~~~~----~~~~~~~~~l~~l~L~~~~ 735 (780)
|.+.... ...+..+++|+.|+++.|.+...+..+ .+++|++|++..+.. +.++..++.++.+.|+.+.
T Consensus 207 N~l~~~~-------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 207 NMLEGDA-------SVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp SEEEECC-------GGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred CcccCcC-------CHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 8543222 256778899999999999877555445 778999999987553 3556677778888886654
Q ss_pred Cc-cchhHHHHHhcccceeecccccccccc
Q 037947 736 PM-YLEHGIKMLLRRTEDLHLDKLNGFQNV 764 (780)
Q Consensus 736 ~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~ 764 (780)
.. ..|.. ..+++|+.|++.+++.+...
T Consensus 280 l~~~ip~~--~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 280 LCGEIPQG--GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp EEEECCCS--TTGGGSCGGGTCSSSEEEST
T ss_pred ccccCCCC--ccccccChHHhcCCCCccCC
Confidence 33 22332 45788999999887765543
No 7
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.80 E-value=9.2e-19 Score=194.69 Aligned_cols=266 Identities=20% Similarity=0.244 Sum_probs=189.7
Q ss_pred CCceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC-CccccCCCCCCEEE
Q 037947 511 KDPIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGCLINLQTLS 587 (780)
Q Consensus 511 ~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~ 587 (780)
..+++|.+++|.+..++. ...+++|++|++++|.+.+.++...|.++++|++|++++|.++.+ |..++.+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 458999999999988743 348999999999999988778777789999999999999999865 78899999999999
Q ss_pred ccCccCCC--ccc--ccccCCCcEEEeecCCCCcc-Chh-hcCCCCCCEEecCCCCCCcccCccccCC------------
Q 037947 588 FECCVLGD--VAT--VGALKKLVILSFRNSHIEQL-PEE-IGQLTRLKLLDLSNCSKLKSIRPNVISN------------ 649 (780)
Q Consensus 588 L~~~~~~~--~~~--i~~l~~L~~L~l~~~~l~~l-p~~-i~~l~~L~~L~l~~~~~l~~~~~~~l~~------------ 649 (780)
+++|.+.. +.. ++.+.+|++|++++|.+..+ |.. +..+++|++|++++ +.+...++..+..
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF-NKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT-CCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC-CcccccChhhhhccccccccccccc
Confidence 99999987 444 89999999999999999887 554 88999999999998 5666655544443
Q ss_pred ----------------------CcccceeeccCCCCcccccc--------------------------------------
Q 037947 650 ----------------------LPRLEELYMGNSFTHWEIEG-------------------------------------- 669 (780)
Q Consensus 650 ----------------------l~~L~~L~l~~~~~~~~~~~-------------------------------------- 669 (780)
+++|++|++++|.+....+.
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 36788888887754211000
Q ss_pred -----------------CC-ccchhhhcCCCCCCEEEeeccCCCCCCc-cc-cccCccEEEEEecCcc----cccccccc
Q 037947 670 -----------------QN-NASLAELNQLSRLTTLEMHILDAQVMPR-EL-FSVGLERYKIFLGDVW----SWTGKYET 725 (780)
Q Consensus 670 -----------------~~-~~~l~~l~~L~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~i~~~~~~----~~~~~~~~ 725 (780)
.. ......+..+++|+.|+++.|.+..++. .+ .+++|++|++..+... .++..++.
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 00 0011235566777777777777666543 33 5677777777665432 33555667
Q ss_pred cceeEeecCCCccchhHHHHHhcccceeeccccccccccccccCCCcccCccCC
Q 037947 726 SRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDKLNGFQNVLHELDGEGFPRLKHL 779 (780)
Q Consensus 726 l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L~~L 779 (780)
++.|.|+.+............+++|+.|+|++ +.++.++... -..+++|++|
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~-~~~l~~L~~L 400 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDT-NQLKSVPDGI-FDRLTSLQKI 400 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTT-TTTCTTCCEE
T ss_pred CCEEECCCCcccccChhhccccccccEEECCC-CccccCCHhH-hccCCcccEE
Confidence 77777766554444222233467888888887 5666665432 1446666655
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.79 E-value=4.7e-19 Score=187.39 Aligned_cols=214 Identities=22% Similarity=0.214 Sum_probs=146.4
Q ss_pred CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCC-cccccccCCCcEEE
Q 037947 531 ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGD-VATVGALKKLVILS 609 (780)
Q Consensus 531 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~ 609 (780)
...+++.|++++|.+. .+|..++ ++++|++|++++|.++.+|..++.+++|++|++++|.+.. |..++++.+|++|+
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAF-RLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGG-GGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCch-hcChhhh-hCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence 3467888888888876 6776653 4888888888888888888888888888888888888776 56788888888888
Q ss_pred eecC-CCCccChhhcC---------CCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhc
Q 037947 610 FRNS-HIEQLPEEIGQ---------LTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELN 679 (780)
Q Consensus 610 l~~~-~l~~lp~~i~~---------l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 679 (780)
+++| .+..+|..++. +++|++|++++ +.++.+|. .++++++|++|++++|.+.. ....+.
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~lp~-~l~~l~~L~~L~L~~N~l~~--------l~~~l~ 226 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW-TGIRSLPA-SIANLQNLKSLKIRNSPLSA--------LGPAIH 226 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE-ECCCCCCG-GGGGCTTCCEEEEESSCCCC--------CCGGGG
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcC-CCcCcchH-hhcCCCCCCEEEccCCCCCc--------Cchhhc
Confidence 8875 45677776654 88888888887 56676654 47888888888888875431 113567
Q ss_pred CCCCCCEEEeeccC-CCCCCccc-cccCccEEEEEecCc----ccccccccccceeEeecCCCccc-hhHHHHHhcccce
Q 037947 680 QLSRLTTLEMHILD-AQVMPREL-FSVGLERYKIFLGDV----WSWTGKYETSRTLKLKLDNPMYL-EHGIKMLLRRTED 752 (780)
Q Consensus 680 ~L~~L~~L~l~~~~-~~~~~~~~-~~~~L~~L~i~~~~~----~~~~~~~~~l~~l~L~~~~~~~~-~~~~~~~l~~L~~ 752 (780)
.+++|+.|+++.|. ...+|..+ .+++|++|.+..+.. +.++..++.++.|.|+.|..... |.++ ..+++|+.
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l-~~L~~L~~ 305 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI-AQLPANCI 305 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGG-GGSCTTCE
T ss_pred cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHH-hhccCceE
Confidence 77888888888765 44455555 677778877765442 23345555566666655443332 3332 22455666
Q ss_pred eeccc
Q 037947 753 LHLDK 757 (780)
Q Consensus 753 L~l~~ 757 (780)
+.+..
T Consensus 306 l~l~~ 310 (328)
T 4fcg_A 306 ILVPP 310 (328)
T ss_dssp EECCG
T ss_pred EeCCH
Confidence 65543
No 9
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=9.1e-18 Score=179.49 Aligned_cols=247 Identities=19% Similarity=0.224 Sum_probs=145.2
Q ss_pred ceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCc-
Q 037947 513 PIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECC- 591 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~- 591 (780)
.++|.+.+|.+..++....+++|++|++++|.+.. ++ .+..+++|++|++++|.++.+|. +..+++|++|++++|
T Consensus 68 L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~-~~--~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~ 143 (347)
T 4fmz_A 68 LEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD-IS--ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANH 143 (347)
T ss_dssp CCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CG--GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCT
T ss_pred ccEEEccCCccccchhhhcCCcCCEEEccCCcccC-ch--HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCC
Confidence 55555555555555444455555555555554432 22 13455555555555555554443 444555555555554
Q ss_pred ----------------------cCCCcccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCC
Q 037947 592 ----------------------VLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISN 649 (780)
Q Consensus 592 ----------------------~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~ 649 (780)
.+...+.++.+++|++|++++|.+..+|. +..+++|++|++++ +.+...++ +..
T Consensus 144 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-n~l~~~~~--~~~ 219 (347)
T 4fmz_A 144 NLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYV-NQITDITP--VAN 219 (347)
T ss_dssp TCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCS-SCCCCCGG--GGG
T ss_pred CcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeeccc-CCCCCCch--hhc
Confidence 44443334455555555555555554444 44555555555554 34444432 455
Q ss_pred CcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCCCCCccccccCccEEEEEecCccc--ccccccccc
Q 037947 650 LPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVWS--WTGKYETSR 727 (780)
Q Consensus 650 l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~--~~~~~~~l~ 727 (780)
+++|++|++++|... .+..+..+++|+.|+++.|.+..++....+++|+.|.+..+.... ++..++.++
T Consensus 220 ~~~L~~L~l~~n~l~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~ 290 (347)
T 4fmz_A 220 MTRLNSLKIGNNKIT---------DLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLN 290 (347)
T ss_dssp CTTCCEEECCSSCCC---------CCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCS
T ss_pred CCcCCEEEccCCccC---------CCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCC
Confidence 666666666665321 112377788888999888888777544478889999987765443 356667788
Q ss_pred eeEeecCCCccchhHHHHHhcccceeeccccccccccccccCCCcccCccCCC
Q 037947 728 TLKLKLDNPMYLEHGIKMLLRRTEDLHLDKLNGFQNVLHELDGEGFPRLKHLL 780 (780)
Q Consensus 728 ~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L~~L~ 780 (780)
.+.++.+............+++|+.|++++++ +..++. ...+++|++|+
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~ 339 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSAD 339 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEES
T ss_pred EEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC---hhhhhccceee
Confidence 88887766544444445557999999999954 666654 35688888774
No 10
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=5e-18 Score=189.91 Aligned_cols=264 Identities=17% Similarity=0.113 Sum_probs=131.7
Q ss_pred CceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCc-cccCCCCCCEEEc
Q 037947 512 DPIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGCLINLQTLSF 588 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L 588 (780)
.++.|.+.+|.+..++. +..+++|+.|++++|.+....|. .|.++++|++|+|++|.++.+|. .+..+++|++|+|
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 35666666666655532 22566666666666655533333 24556666666666666665543 3455666666666
Q ss_pred cCccCCC--cccccccCCCcEEEeecCCCCcc-ChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCcc
Q 037947 589 ECCVLGD--VATVGALKKLVILSFRNSHIEQL-PEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHW 665 (780)
Q Consensus 589 ~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 665 (780)
++|.+.. +..+..+.+|++|++++|.+..+ |..+..+++|++|++++ +.++.+++..+..+++|+.|++++|....
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC-CcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 6665544 33455555555555555555544 23455555555555555 34444444444555555555555443221
Q ss_pred ccccC-----------------CccchhhhcCCCCCCEEEeeccCCCCCCccc--cccCccEEEEEecCcc----ccccc
Q 037947 666 EIEGQ-----------------NNASLAELNQLSRLTTLEMHILDAQVMPREL--FSVGLERYKIFLGDVW----SWTGK 722 (780)
Q Consensus 666 ~~~~~-----------------~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~i~~~~~~----~~~~~ 722 (780)
..... ............+|+.|+++.|.+..+|... .+++|+.|++..+... ..+..
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 11000 0000011112225666666666666555432 5566666666554322 22444
Q ss_pred ccccceeEeecCCCccchhHHHHHhcccceeeccccccccccccccCCCcccCccCC
Q 037947 723 YETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDKLNGFQNVLHELDGEGFPRLKHL 779 (780)
Q Consensus 723 ~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L~~L 779 (780)
++.++.|.|..+............+++|+.|+|++ +.+..++.... ..+++|++|
T Consensus 271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~-~~l~~L~~L 325 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG-NQLTTLEESVF-HSVGNLETL 325 (477)
T ss_dssp CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS-SCCSCCCGGGB-SCGGGCCEE
T ss_pred cccCCEEECCCCccceECHHHhcCcccCCEEECCC-CcCceeCHhHc-CCCcccCEE
Confidence 55556666554443333222223356677777766 35555544321 334555544
No 11
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=1.2e-17 Score=178.46 Aligned_cols=257 Identities=16% Similarity=0.169 Sum_probs=183.0
Q ss_pred CceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCc
Q 037947 512 DPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECC 591 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 591 (780)
.+++|.+.++.+..++....+++|+.|++++|.+.. ++. +.++++|++|++++|.++.+| .+..+++|++|++++|
T Consensus 45 ~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~-~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 45 SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITD-ISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED 120 (347)
T ss_dssp TCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTS
T ss_pred cccEEEEeCCccccchhhhhcCCccEEEccCCcccc-chh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCC
Confidence 589999999999999887789999999999998874 444 688999999999999999876 6899999999999999
Q ss_pred cCCCcccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccc---
Q 037947 592 VLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIE--- 668 (780)
Q Consensus 592 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~--- 668 (780)
.+...+.+..+++|++|++++|.....+..+..+++|++|++++ +.+...++ ++.+++|++|++++|.......
T Consensus 121 ~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~ 197 (347)
T 4fmz_A 121 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTE-SKVKDVTP--IANLTDLYSLSLNYNQIEDISPLAS 197 (347)
T ss_dssp CCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCS-SCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGG
T ss_pred cccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecC-CCcCCchh--hccCCCCCEEEccCCcccccccccC
Confidence 99986669999999999999985444444588899999999988 45666644 6788888888888875432110
Q ss_pred ----------cCCccchhhhcCCCCCCEEEeeccCCCCCCccccccCccEEEEEecCcc--cccccccccceeEeecCCC
Q 037947 669 ----------GQNNASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVW--SWTGKYETSRTLKLKLDNP 736 (780)
Q Consensus 669 ----------~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~--~~~~~~~~l~~l~L~~~~~ 736 (780)
+........+..+++|+.|+++.|.+..++....+++|++|.+..+... .....++.++.+.++.+..
T Consensus 198 l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l 277 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQI 277 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred CCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCcc
Confidence 0000111225566777777777777766666336677777777665433 2345556667776665543
Q ss_pred ccchhHHHHHhcccceeeccccccccccccccCCCcccCccCC
Q 037947 737 MYLEHGIKMLLRRTEDLHLDKLNGFQNVLHELDGEGFPRLKHL 779 (780)
Q Consensus 737 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L~~L 779 (780)
...+ ....+++|+.|+++++ .+....... -.++|+|++|
T Consensus 278 ~~~~--~~~~l~~L~~L~L~~n-~l~~~~~~~-l~~l~~L~~L 316 (347)
T 4fmz_A 278 SDIS--VLNNLSQLNSLFLNNN-QLGNEDMEV-IGGLTNLTTL 316 (347)
T ss_dssp CCCG--GGGGCTTCSEEECCSS-CCCGGGHHH-HHTCTTCSEE
T ss_pred CCCh--hhcCCCCCCEEECcCC-cCCCcChhH-hhccccCCEE
Confidence 3332 2334678888888885 444333221 1346667665
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=1.4e-17 Score=186.22 Aligned_cols=234 Identities=20% Similarity=0.150 Sum_probs=177.5
Q ss_pred eEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC-CccccCCCCCCEEEccCcc
Q 037947 514 IAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGCLINLQTLSFECCV 592 (780)
Q Consensus 514 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~ 592 (780)
+.+...++.+..+|... .++++.|++++|.+.. ++...|.++++|++|+|++|.++.+ |..+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKT-LNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccce-ECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 45666677788887643 4689999999999875 4444568999999999999999966 7889999999999999999
Q ss_pred CCCc--ccccccCCCcEEEeecCCCCcc-ChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCcccccc
Q 037947 593 LGDV--ATVGALKKLVILSFRNSHIEQL-PEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEG 669 (780)
Q Consensus 593 ~~~~--~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 669 (780)
+..+ ..+.++.+|++|++++|.+..+ |..+..+++|++|++++ +.+..+++..+..+++|++|++++|.+...
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--- 167 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTSI--- 167 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSSC---
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCccc---
Confidence 9883 3578999999999999999876 56789999999999999 678888888899999999999999854321
Q ss_pred CCccchhhhcCCCCCCEEEeeccCCCCCCccc--cccCccEEEEEecCcc----cccccccccceeEeecCCCccchhHH
Q 037947 670 QNNASLAELNQLSRLTTLEMHILDAQVMPREL--FSVGLERYKIFLGDVW----SWTGKYETSRTLKLKLDNPMYLEHGI 743 (780)
Q Consensus 670 ~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~i~~~~~~----~~~~~~~~l~~l~L~~~~~~~~~~~~ 743 (780)
....+.++++|+.|++..|.+..++... .+++|+.|++..+... ........++.|.|+.+.....+...
T Consensus 168 ----~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 243 (477)
T 2id5_A 168 ----PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243 (477)
T ss_dssp ----CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH
T ss_pred ----ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH
Confidence 1245778889999999988877766543 6777888888764422 11222235566666555444444444
Q ss_pred HHHhcccceeeccc
Q 037947 744 KMLLRRTEDLHLDK 757 (780)
Q Consensus 744 ~~~l~~L~~L~l~~ 757 (780)
...+++|+.|+|++
T Consensus 244 ~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 244 VRHLVYLRFLNLSY 257 (477)
T ss_dssp HTTCTTCCEEECCS
T ss_pred hcCccccCeeECCC
Confidence 44456666666666
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=7.7e-18 Score=193.49 Aligned_cols=259 Identities=20% Similarity=0.200 Sum_probs=191.0
Q ss_pred cCCceEEEccCCCCccCCCcc--CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCc-cccCCCCCCEE
Q 037947 510 QKDPIAISLPCRDIQELPERL--ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGCLINLQTL 586 (780)
Q Consensus 510 ~~~~~~l~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L 586 (780)
....+.+.+.++.+..+|... .+++|++|++++|.+.. ++...|..++.|++|+|++|.++.+|+ .++.+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 345789999999998888753 78999999999999875 444456889999999999999997754 57899999999
Q ss_pred EccCccCCC-ccc-ccccCCCcEEEeecCCCCccCh-hhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCC
Q 037947 587 SFECCVLGD-VAT-VGALKKLVILSFRNSHIEQLPE-EIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFT 663 (780)
Q Consensus 587 ~L~~~~~~~-~~~-i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 663 (780)
+|++|.+.. |+. ++++.+|++|++++|.+..+|. .++.+++|++|++++ +.++.++. +.+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~---~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVDL---SLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCCG---GGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcCh---hhhhhhhhhhcccCcc
Confidence 999999988 444 5899999999999999988765 689999999999998 66776643 3444555544444432
Q ss_pred cc-------------------cc------------ccCCccchhhhcCCCCCCEEEeeccCCCCC-Cccc-cccCccEEE
Q 037947 664 HW-------------------EI------------EGQNNASLAELNQLSRLTTLEMHILDAQVM-PREL-FSVGLERYK 710 (780)
Q Consensus 664 ~~-------------------~~------------~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~ 710 (780)
.. .. .+........+..+++|+.|+++.|.+..+ |..+ .+++|+.|.
T Consensus 205 ~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 205 STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence 11 00 000111224567788899999998887766 3444 788899999
Q ss_pred EEecCcc---cccccccccceeEeecCCCccchhHHHHHhcccceeeccccccccccccccCCCcccCccCC
Q 037947 711 IFLGDVW---SWTGKYETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDKLNGFQNVLHELDGEGFPRLKHL 779 (780)
Q Consensus 711 i~~~~~~---~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L~~L 779 (780)
+..+... .+...++.++.|.|+.+.....+..+ ..+++|+.|+|++ +.+..++ ...|++|+.|
T Consensus 285 Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~-~~l~~L~~L~L~~-N~l~~~~----~~~~~~L~~L 350 (597)
T 3oja_B 285 ISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDH-NSIVTLK----LSTHHTLKNL 350 (597)
T ss_dssp CTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECCS-SCCCCCC----CCTTCCCSEE
T ss_pred CCCCCCCCCCcccccCCCCcEEECCCCCCCccCccc-ccCCCCCEEECCC-CCCCCcC----hhhcCCCCEE
Confidence 8776543 33455778888888777665566665 4469999999999 4555554 3557888766
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.77 E-value=1.3e-17 Score=181.27 Aligned_cols=257 Identities=19% Similarity=0.188 Sum_probs=157.5
Q ss_pred CceEEEccCCCCccCCCc--cCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCC-ccccCCCCCCEEEc
Q 037947 512 DPIAISLPCRDIQELPER--LECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP-STLGCLINLQTLSF 588 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L 588 (780)
.++++.+.++.+..+|.. ..+++|+.|++++|.+.. ++...+..+++|++|++++|.++.+| ..++.+++|++|++
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccc-cChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 466666666666666653 256677777777666553 33334466677777777777666553 34666777777777
Q ss_pred cCccCCC-ccc-ccccCCCcEEEeecCCCCccCh-hhcCCCCCCEEecCCCCCCcccCccccCCCccccee---------
Q 037947 589 ECCVLGD-VAT-VGALKKLVILSFRNSHIEQLPE-EIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEEL--------- 656 (780)
Q Consensus 589 ~~~~~~~-~~~-i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L--------- 656 (780)
++|.+.. +.. ++++++|++|++++|.+..+|. .+..+++|++|++++ +.++.++. +.+++|+.|
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~---~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVDL---SLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS-SCCSBCCG---GGCTTCSEEECCSSCCSE
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC-CcCCcccc---ccccccceeecccccccc
Confidence 7776666 333 4666777777777766666543 466667777777766 44544432 223333333
Q ss_pred ----------eccCCCCcccc------------ccCCccchhhhcCCCCCCEEEeeccCCCCC-Cccc-cccCccEEEEE
Q 037947 657 ----------YMGNSFTHWEI------------EGQNNASLAELNQLSRLTTLEMHILDAQVM-PREL-FSVGLERYKIF 712 (780)
Q Consensus 657 ----------~l~~~~~~~~~------------~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~i~ 712 (780)
++++|...... .+..-.....+..+++|+.|+++.|.+..+ |..+ .+++|++|.+.
T Consensus 201 ~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (390)
T 3o6n_A 201 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280 (390)
T ss_dssp EECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred cCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence 33322211000 000011124567788999999999887776 3444 78889999998
Q ss_pred ecCcc---cccccccccceeEeecCCCccchhHHHHHhcccceeeccccccccccccccCCCcccCccCC
Q 037947 713 LGDVW---SWTGKYETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDKLNGFQNVLHELDGEGFPRLKHL 779 (780)
Q Consensus 713 ~~~~~---~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L~~L 779 (780)
.+... .....++.++.+.|+.+.....+..+ ..+++|+.|++++ +.+..++ ...+++|++|
T Consensus 281 ~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~L~~-N~i~~~~----~~~~~~L~~L 344 (390)
T 3o6n_A 281 NNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDH-NSIVTLK----LSTHHTLKNL 344 (390)
T ss_dssp SSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECCS-SCCCCCC----CCTTCCCSEE
T ss_pred CCcCcccCcccCCCCCCCEEECCCCcceecCccc-cccCcCCEEECCC-CccceeC----chhhccCCEE
Confidence 76543 23456778888888777655555554 3469999999999 4566664 3557888776
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.77 E-value=2.5e-18 Score=202.36 Aligned_cols=182 Identities=16% Similarity=0.272 Sum_probs=103.7
Q ss_pred CccCCCcc-CCCCccEEEeccCcccc-----------------ccCchh-hcCCCCccEEEecCCCCC-CCCccccCCCC
Q 037947 523 IQELPERL-ECPKLKLFFLFSKKLSL-----------------VIPDLF-FEGVPSLQVLSLNGFHFP-SLPSTLGCLIN 582 (780)
Q Consensus 523 ~~~~~~~~-~~~~L~~L~l~~~~~~~-----------------~~~~~~-~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~ 582 (780)
+..+|... .+++|+.|++++|.+.+ .+|..+ |.++++|++|+|++|.+. .+|..++++++
T Consensus 437 L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~ 516 (876)
T 4ecn_A 437 ITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE 516 (876)
T ss_dssp EEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSS
T ss_pred ccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCC
Confidence 33344433 56666666666666665 255554 235666666666666644 55666666666
Q ss_pred CCEEEccCcc-CCC---cccccccC-------CCcEEEeecCCCCccCh--hhcCCCCCCEEecCCCCCCcccCccccCC
Q 037947 583 LQTLSFECCV-LGD---VATVGALK-------KLVILSFRNSHIEQLPE--EIGQLTRLKLLDLSNCSKLKSIRPNVISN 649 (780)
Q Consensus 583 L~~L~L~~~~-~~~---~~~i~~l~-------~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~~~~~l~~ 649 (780)
|++|+|++|. ++. |..++++. +|++|++++|.+..+|. .++.+++|++|++++ +.++.+| .++.
T Consensus 517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~-N~l~~lp--~~~~ 593 (876)
T 4ecn_A 517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVH-NKVRHLE--AFGT 593 (876)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTT-SCCCBCC--CCCT
T ss_pred CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCC-CCcccch--hhcC
Confidence 6666666665 542 33444443 66666666666666666 666666666666666 4455554 3566
Q ss_pred CcccceeeccCCCCccccccCCccchhhhcCCCC-CCEEEeeccCCCCCCccc---cccCccEEEEEecC
Q 037947 650 LPRLEELYMGNSFTHWEIEGQNNASLAELNQLSR-LTTLEMHILDAQVMPREL---FSVGLERYKIFLGD 715 (780)
Q Consensus 650 l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~-L~~L~l~~~~~~~~~~~~---~~~~L~~L~i~~~~ 715 (780)
+++|+.|++++|.+. .++ ..+.++++ |+.|+++.|.+..+|..+ ..++|+.|.+..+.
T Consensus 594 L~~L~~L~Ls~N~l~-~lp-------~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIE-EIP-------EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp TSEESEEECCSSCCS-CCC-------TTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSC
T ss_pred CCcceEEECcCCccc-cch-------HHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCc
Confidence 666666666666432 111 23455555 666666666665555544 12235555555433
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.77 E-value=5.4e-18 Score=184.36 Aligned_cols=134 Identities=15% Similarity=0.280 Sum_probs=119.6
Q ss_pred ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCC-ccccCCCCCCEEEccCccCCC--cccccccCCC
Q 037947 529 RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP-STLGCLINLQTLSFECCVLGD--VATVGALKKL 605 (780)
Q Consensus 529 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L 605 (780)
...+++++.|.+.++.+. .+|..++..+++|++|++++|.++.+| ..+..+++|++|++++|.+.. +..++++++|
T Consensus 41 ~~~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 41 DITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp SGGGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 346789999999998875 688888899999999999999999775 489999999999999999987 4568999999
Q ss_pred cEEEeecCCCCccChhh-cCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCc
Q 037947 606 VILSFRNSHIEQLPEEI-GQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTH 664 (780)
Q Consensus 606 ~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 664 (780)
++|++++|.+..+|..+ ..+++|++|++++ +.+..+++..++.+++|++|++++|.+.
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCC-CccCccChhhccCCCCCCEEECCCCcCC
Confidence 99999999999999875 8999999999999 6788888888999999999999998653
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=2e-18 Score=181.35 Aligned_cols=233 Identities=15% Similarity=0.200 Sum_probs=183.6
Q ss_pred CCccEEEeccCcccc--ccCchhhcCCCCccEEEecC-CCCC-CCCccccCCCCCCEEEccCccCCC--cccccccCCCc
Q 037947 533 PKLKLFFLFSKKLSL--VIPDLFFEGVPSLQVLSLNG-FHFP-SLPSTLGCLINLQTLSFECCVLGD--VATVGALKKLV 606 (780)
Q Consensus 533 ~~L~~L~l~~~~~~~--~~~~~~~~~l~~Lr~L~l~~-~~~~-~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~ 606 (780)
.+++.|++++|.+.+ .+|..+ .+++.|++|++++ |.+. .+|..++.+++|++|++++|.+.. |..++++.+|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 579999999999987 788764 7899999999995 7776 789999999999999999999974 77899999999
Q ss_pred EEEeecCCCC-ccChhhcCCCCCCEEecCCCCCCcccCccccCCCc-ccceeeccCCCCccccccCCccchhhhcCCCCC
Q 037947 607 ILSFRNSHIE-QLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLP-RLEELYMGNSFTHWEIEGQNNASLAELNQLSRL 684 (780)
Q Consensus 607 ~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L 684 (780)
+|++++|.+. .+|..+..+++|++|++++ +.++...|..++.++ +|++|++++|.+....+ ..+..+. |
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~-------~~~~~l~-L 199 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDG-NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP-------PTFANLN-L 199 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCS-SCCEEECCGGGGCCCTTCCEEECCSSEEEEECC-------GGGGGCC-C
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcC-CcccCcCCHHHhhhhhcCcEEECcCCeeeccCC-------hHHhCCc-c
Confidence 9999999988 7899999999999999999 677744456688998 99999999996533222 4455665 9
Q ss_pred CEEEeeccCCCCCCc-cc-cccCccEEEEEecCcc---cccccccccceeEeecCCCc-cchhHHHHHhcccceeecccc
Q 037947 685 TTLEMHILDAQVMPR-EL-FSVGLERYKIFLGDVW---SWTGKYETSRTLKLKLDNPM-YLEHGIKMLLRRTEDLHLDKL 758 (780)
Q Consensus 685 ~~L~l~~~~~~~~~~-~~-~~~~L~~L~i~~~~~~---~~~~~~~~l~~l~L~~~~~~-~~~~~~~~~l~~L~~L~l~~~ 758 (780)
+.|+++.|.+...+. .+ .+++|+.|.+..+... .....++.++.+.|+.+... ..+..+ ..+++|+.|+|+++
T Consensus 200 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNVSFN 278 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG-GGCTTCCEEECCSS
T ss_pred cEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHH-hcCcCCCEEECcCC
Confidence 999999998765444 34 7899999999775432 22456677888888776644 234443 34699999999995
Q ss_pred cccc-ccccccCCCcccCccCCC
Q 037947 759 NGFQ-NVLHELDGEGFPRLKHLL 780 (780)
Q Consensus 759 ~~l~-~~~~~~~~~~fp~L~~L~ 780 (780)
.+. .++. . ..+++|+.|+
T Consensus 279 -~l~~~ip~-~--~~l~~L~~l~ 297 (313)
T 1ogq_A 279 -NLCGEIPQ-G--GNLQRFDVSA 297 (313)
T ss_dssp -EEEEECCC-S--TTGGGSCGGG
T ss_pred -cccccCCC-C--ccccccChHH
Confidence 454 4443 2 6688887763
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=1e-17 Score=185.10 Aligned_cols=210 Identities=18% Similarity=0.198 Sum_probs=105.9
Q ss_pred ceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCc-cccCCCCCCEEEcc
Q 037947 513 PIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGCLINLQTLSFE 589 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~ 589 (780)
++.|.+++|.+..++. +..+++|+.|++++|.+. .++...|.++++|++|+|++|.++.+|. .+..+++|++|+|+
T Consensus 66 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp CSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 5555555555555432 225555555665555554 2333334555556666665555555543 35555556666665
Q ss_pred CccCCC--cccccccCCCcEEEeecC-CCCccCh-hhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCcc
Q 037947 590 CCVLGD--VATVGALKKLVILSFRNS-HIEQLPE-EIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHW 665 (780)
Q Consensus 590 ~~~~~~--~~~i~~l~~L~~L~l~~~-~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 665 (780)
+|.+.. +..+.++.+|++|++++| .+..+|. .+..+++|++|++++ +.++.+|. +..+++|++|++++|.+..
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPN--LTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT-SCCSSCCC--CTTCSSCCEEECTTSCCCE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC-CcCccccc--cCCCcccCEEECCCCccCc
Confidence 555554 223555555566665553 4444443 345555566666555 34555532 4555556666655553322
Q ss_pred ccccCCccchhhhcCCCCCCEEEeeccCCCCCCccc--cccCccEEEEEecCcc----cccccccccceeEeec
Q 037947 666 EIEGQNNASLAELNQLSRLTTLEMHILDAQVMPREL--FSVGLERYKIFLGDVW----SWTGKYETSRTLKLKL 733 (780)
Q Consensus 666 ~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~i~~~~~~----~~~~~~~~l~~l~L~~ 733 (780)
..+ ..+.++++|+.|+++.|.+..++... .+++|+.|++..+... ..+..++.++.+.|..
T Consensus 222 ~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 222 IRP-------GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp ECT-------TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred cCh-------hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 111 33445555566666555555544332 4455555555544322 1233344445555533
No 19
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.76 E-value=3.3e-18 Score=183.35 Aligned_cols=191 Identities=18% Similarity=0.249 Sum_probs=114.9
Q ss_pred EEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC-CccccCCCCCCEEEccCccCC
Q 037947 516 ISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGCLINLQTLSFECCVLG 594 (780)
Q Consensus 516 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~ 594 (780)
....++.+..+|... .++|+.|++++|.+. .+|...+.++++|++|++++|.++.+ |..+..+++|++|++++|.++
T Consensus 36 c~~~~~~l~~iP~~~-~~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 36 CKGSSGSLNSIPSGL-TEAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EECCSTTCSSCCTTC-CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eeCCCCCcccccccc-cccCcEEECCCCcCc-ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 444555566665432 246667777766665 34443456666777777776666654 345666677777777776666
Q ss_pred C-ccc-ccccCCCcEEEeecCCCCccCh--hhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccC
Q 037947 595 D-VAT-VGALKKLVILSFRNSHIEQLPE--EIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQ 670 (780)
Q Consensus 595 ~-~~~-i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 670 (780)
. ++. ++++++|++|++++|.+..+|. .+..+++|++|++++|+.+..+++..++.+++|++|++++|......+
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-- 191 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP-- 191 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT--
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH--
Confidence 5 222 5666677777777666666665 566667777777766445666655556666677777766664322111
Q ss_pred CccchhhhcCCCCCCEEEeeccCCCCCCccc--cccCccEEEEEecC
Q 037947 671 NNASLAELNQLSRLTTLEMHILDAQVMPREL--FSVGLERYKIFLGD 715 (780)
Q Consensus 671 ~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~i~~~~ 715 (780)
..+..+++|+.|+++.|....+|... .+++|+.|++..+.
T Consensus 192 -----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 192 -----KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp -----TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred -----HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc
Confidence 34555666666666666665555543 35666666666544
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.76 E-value=1.9e-17 Score=191.13 Aligned_cols=141 Identities=24% Similarity=0.283 Sum_probs=118.7
Q ss_pred CCceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC-CccccCCCCCCEEE
Q 037947 511 KDPIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGCLINLQTLS 587 (780)
Q Consensus 511 ~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~ 587 (780)
..+++|.++++.+..++. ...+++|++|++++|.+.. +++..|.++++|++|++++|.++.+ |..++++++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccc-cCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 458999999999988875 3489999999999998875 4444568899999999999999977 78899999999999
Q ss_pred ccCccCCC--cccccccCCCcEEEeecCCCC--ccChhhcCCCCCCEEecCCCCCCcccCccccCCCccc
Q 037947 588 FECCVLGD--VATVGALKKLVILSFRNSHIE--QLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRL 653 (780)
Q Consensus 588 L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L 653 (780)
+++|.+.. +..++++.+|++|++++|.+. .+|..++++++|++|++++ +.++.+++..++.+++|
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY-NYIQTITVNDLQFLREN 179 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS-SCCCEECTTTTHHHHHC
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC-CcceecChhhhhhhhcc
Confidence 99999877 357999999999999999987 4799999999999999998 56776666545444433
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.76 E-value=1e-17 Score=185.85 Aligned_cols=192 Identities=20% Similarity=0.211 Sum_probs=93.4
Q ss_pred ceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCc-cccCCCCCCEEEcc
Q 037947 513 PIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGCLINLQTLSFE 589 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~ 589 (780)
++.|.+++|.+..++. +..+++|+.|++++|.+.. ++...|.++++|++|+|++|.++.+|. .+..+++|++|+|+
T Consensus 77 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 77 TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred ccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCC-cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 4555555555554422 1245555555555555442 222233455555555555555554433 24455555555555
Q ss_pred CccCCC--cccccccCCCcEEEeec-CCCCccCh-hhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCcc
Q 037947 590 CCVLGD--VATVGALKKLVILSFRN-SHIEQLPE-EIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHW 665 (780)
Q Consensus 590 ~~~~~~--~~~i~~l~~L~~L~l~~-~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 665 (780)
+|.+.. +..+.++++|++|++++ +.+..+|. .+..+++|++|++++ +.++.+|. +..+++|++|++++|.+..
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~--~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPN--LTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCC--CTTCTTCCEEECTTSCCSE
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC-Cccccccc--ccccccccEEECcCCcCcc
Confidence 555544 12345555555555555 24444443 344555555555555 34444421 4555555555555553322
Q ss_pred ccccCCccchhhhcCCCCCCEEEeeccCCCCCCccc--cccCccEEEEEecC
Q 037947 666 EIEGQNNASLAELNQLSRLTTLEMHILDAQVMPREL--FSVGLERYKIFLGD 715 (780)
Q Consensus 666 ~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~i~~~~ 715 (780)
..+ ..+.++++|+.|+++.|.+..++... .+++|+.|++..+.
T Consensus 233 ~~~-------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 233 IRP-------GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp ECG-------GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cCc-------ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc
Confidence 111 33445555555555555544443322 44555555554443
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.75 E-value=3.4e-17 Score=182.34 Aligned_cols=254 Identities=17% Similarity=0.180 Sum_probs=120.5
Q ss_pred ceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCcc
Q 037947 513 PIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCV 592 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~ 592 (780)
++.|.+.++.+..++....+++|+.|++++|.+.. +|. +.++++|++|++++|.++.+|. ++.+++|++|++++|.
T Consensus 48 l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 48 VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 123 (466)
T ss_dssp CCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred ccEEecCCCCCccCcchhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC
Confidence 45555555555555544455555555555555442 222 3445555555555555554443 5555555555555555
Q ss_pred CCCcccccccCCCcEEEeecCCCCccCh--------------------hhcCCCCCCEEecCCCCCCcccCccccCCCcc
Q 037947 593 LGDVATVGALKKLVILSFRNSHIEQLPE--------------------EIGQLTRLKLLDLSNCSKLKSIRPNVISNLPR 652 (780)
Q Consensus 593 ~~~~~~i~~l~~L~~L~l~~~~l~~lp~--------------------~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~ 652 (780)
+..++.++++++|++|++++|.+..+|. .+..+++|++|++++ +.+..++. +..+++
T Consensus 124 l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~--l~~l~~ 200 (466)
T 1o6v_A 124 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS-NKVSDISV--LAKLTN 200 (466)
T ss_dssp CCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCS-SCCCCCGG--GGGCTT
T ss_pred CCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcC-CcCCCChh--hccCCC
Confidence 5443334555555555555544443332 144455555555555 33444321 445555
Q ss_pred cceeeccCCCCccccc-------------cCCccchhhhcCCCCCCEEEeeccCCCCCCccccccCccEEEEEecCcccc
Q 037947 653 LEELYMGNSFTHWEIE-------------GQNNASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVWSW 719 (780)
Q Consensus 653 L~~L~l~~~~~~~~~~-------------~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~ 719 (780)
|++|++++|......+ +.....+..+..+++|+.|+++.|.+..++....+++|+.|.+..+.....
T Consensus 201 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~ 280 (466)
T 1o6v_A 201 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI 280 (466)
T ss_dssp CSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC
T ss_pred CCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcc
Confidence 5555555543211100 000011123445555555555555555444422555566666654433211
Q ss_pred --cccccccceeEeecCCCccchhHHHHHhcccceeeccccccccccccccCCCcccCccCC
Q 037947 720 --TGKYETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDKLNGFQNVLHELDGEGFPRLKHL 779 (780)
Q Consensus 720 --~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L~~L 779 (780)
+..++.++.+.+..+.....+. ...+++|+.|+++++ .+..+.. ...+++|++|
T Consensus 281 ~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L 336 (466)
T 1o6v_A 281 SPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRL 336 (466)
T ss_dssp GGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEE
T ss_pred ccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCC-cCCCchh---hccCccCCEe
Confidence 3344555555555443332222 234567777777774 4444432 1356666654
No 23
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.75 E-value=2.9e-18 Score=198.21 Aligned_cols=243 Identities=13% Similarity=0.099 Sum_probs=159.6
Q ss_pred CceEEEccCCCCc-cCCCcc-CCCCccEEEeccCc-ccc-ccCchhhc-----CCCCccEEEecCCCCCCCCc--cccCC
Q 037947 512 DPIAISLPCRDIQ-ELPERL-ECPKLKLFFLFSKK-LSL-VIPDLFFE-----GVPSLQVLSLNGFHFPSLPS--TLGCL 580 (780)
Q Consensus 512 ~~~~l~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~-~~~-~~~~~~~~-----~l~~Lr~L~l~~~~~~~lp~--~i~~l 580 (780)
..++|.+.+|.+. .+|... .+++|+.|++++|. +.+ .+|..+.. .+++|++|++++|.++.+|. .++.+
T Consensus 250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l 329 (636)
T 4eco_A 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329 (636)
T ss_dssp TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTC
T ss_pred CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccC
Confidence 5788999888754 456544 78999999999998 877 78876532 23889999999999998898 89999
Q ss_pred CCCCEEEccCccCC-CcccccccCCCcEEEeecCCCCccChhhcCCCC-CCEEecCCCCCCcccCccccCCCc--cccee
Q 037947 581 INLQTLSFECCVLG-DVATVGALKKLVILSFRNSHIEQLPEEIGQLTR-LKLLDLSNCSKLKSIRPNVISNLP--RLEEL 656 (780)
Q Consensus 581 ~~L~~L~L~~~~~~-~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~-L~~L~l~~~~~l~~~~~~~l~~l~--~L~~L 656 (780)
++|++|++++|.+. .++.++.+.+|++|++++|.+..+|..++.+++ |++|++++ +.++.+|. .++.++ +|++|
T Consensus 330 ~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~-N~l~~lp~-~~~~~~l~~L~~L 407 (636)
T 4eco_A 330 KKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH-NKLKYIPN-IFDAKSVSVMSAI 407 (636)
T ss_dssp TTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS-SCCSSCCS-CCCTTCSSCEEEE
T ss_pred CCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC-CcCcccch-hhhhcccCccCEE
Confidence 99999999999887 444888888999999998888888888888888 99999988 56776654 455544 78888
Q ss_pred eccCCCCccccccCCc-----------------------cch-hhhcCCCCCCEEEeeccCCCCCCccc-c-c-------
Q 037947 657 YMGNSFTHWEIEGQNN-----------------------ASL-AELNQLSRLTTLEMHILDAQVMPREL-F-S------- 703 (780)
Q Consensus 657 ~l~~~~~~~~~~~~~~-----------------------~~l-~~l~~L~~L~~L~l~~~~~~~~~~~~-~-~------- 703 (780)
++++|.+....+.... ... .-+..+++|+.|+++.|.+..+|... . .
T Consensus 408 ~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNT 487 (636)
T ss_dssp ECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTG
T ss_pred ECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccccccccc
Confidence 8887755332221110 000 11223455556666555555555543 1 1
Q ss_pred cCccEEEEEecCcc---cccc--cccccceeEeecCCCccchhHHHHHhcccceeeccc
Q 037947 704 VGLERYKIFLGDVW---SWTG--KYETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDK 757 (780)
Q Consensus 704 ~~L~~L~i~~~~~~---~~~~--~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 757 (780)
++|+.|++..+... .... .++.++.|.|+.+.....+..+. .+++|+.|+|++
T Consensus 488 ~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~Ls~ 545 (636)
T 4eco_A 488 YLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPL-NSSTLKGFGIRN 545 (636)
T ss_dssp GGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG-GCSSCCEEECCS
T ss_pred CCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhh-cCCCCCEEECCC
Confidence 15566665544322 1122 44555555555544333333332 246666666643
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=4.7e-18 Score=200.07 Aligned_cols=244 Identities=15% Similarity=0.154 Sum_probs=171.7
Q ss_pred CCceEEEccCCCC-ccCCCcc-CCCCccEEEeccCc-ccc-ccCchhh------cCCCCccEEEecCCCCCCCCc--ccc
Q 037947 511 KDPIAISLPCRDI-QELPERL-ECPKLKLFFLFSKK-LSL-VIPDLFF------EGVPSLQVLSLNGFHFPSLPS--TLG 578 (780)
Q Consensus 511 ~~~~~l~l~~~~~-~~~~~~~-~~~~L~~L~l~~~~-~~~-~~~~~~~------~~l~~Lr~L~l~~~~~~~lp~--~i~ 578 (780)
...+.|.+.+|.+ ..+|... .+++|+.|++++|. +.+ .+|..+. ..+++|++|++++|.++.+|. .++
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~ 570 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQ 570 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHT
T ss_pred CCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhh
Confidence 3589999998874 4566544 89999999999998 877 6777542 345699999999999999998 899
Q ss_pred CCCCCCEEEccCccCCCcccccccCCCcEEEeecCCCCccChhhcCCCC-CCEEecCCCCCCcccCccccCCCcc--cce
Q 037947 579 CLINLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTR-LKLLDLSNCSKLKSIRPNVISNLPR--LEE 655 (780)
Q Consensus 579 ~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~-L~~L~l~~~~~l~~~~~~~l~~l~~--L~~ 655 (780)
.+++|++|+|++|.+..++.++++++|+.|++++|.+..+|..+..+++ |++|++++ +.++.+| ..++.++. |+.
T Consensus 571 ~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~-N~L~~lp-~~~~~~~~~~L~~ 648 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSH-NKLKYIP-NIFNAKSVYVMGS 648 (876)
T ss_dssp TCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCS-SCCCSCC-SCCCTTCSSCEEE
T ss_pred cCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcC-CCCCcCc-hhhhccccCCCCE
Confidence 9999999999999988866999999999999999999999999999999 99999998 5677775 44666544 888
Q ss_pred eeccCCCCccccccC---------------------Cccchhh-hcCCCCCCEEEeeccCCCCCCccc-c--------cc
Q 037947 656 LYMGNSFTHWEIEGQ---------------------NNASLAE-LNQLSRLTTLEMHILDAQVMPREL-F--------SV 704 (780)
Q Consensus 656 L~l~~~~~~~~~~~~---------------------~~~~l~~-l~~L~~L~~L~l~~~~~~~~~~~~-~--------~~ 704 (780)
|++++|.+...++.- ....... +..+++|+.|+++.|.+..+|... . ++
T Consensus 649 L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp EECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGG
T ss_pred EECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccC
Confidence 888888654322100 0000111 124566666666666666666554 1 11
Q ss_pred CccEEEEEecCcc---cccc--cccccceeEeecCCCccchhHHHHHhcccceeeccc
Q 037947 705 GLERYKIFLGDVW---SWTG--KYETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDK 757 (780)
Q Consensus 705 ~L~~L~i~~~~~~---~~~~--~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 757 (780)
+|+.|.+..+... ..+. .++.++.|.|+.+.....+..+. .+++|+.|+|++
T Consensus 729 ~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~-~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 729 LLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL-NSSQLKAFGIRH 785 (876)
T ss_dssp GCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGG-GCTTCCEEECCC
T ss_pred CccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhh-cCCCCCEEECCC
Confidence 6666666654432 2222 45566666665554333443333 356777777765
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.74 E-value=4.5e-18 Score=196.63 Aligned_cols=215 Identities=13% Similarity=0.178 Sum_probs=114.0
Q ss_pred CCCCccEEEeccCccccc-----------------cCchhhc--CCCCccEEEecCCCCC-CCCccccCCCCCCEEEccC
Q 037947 531 ECPKLKLFFLFSKKLSLV-----------------IPDLFFE--GVPSLQVLSLNGFHFP-SLPSTLGCLINLQTLSFEC 590 (780)
Q Consensus 531 ~~~~L~~L~l~~~~~~~~-----------------~~~~~~~--~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~L~~ 590 (780)
.+++|++|++++|.+.+. +|..+ . ++++|++|++++|.+. .+|..++++++|++|++++
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~ 282 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTT
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcC
Confidence 556666666666665553 55543 3 5666666666666644 4566666666666666666
Q ss_pred cc-CCC---ccccccc------CCCcEEEeecCCCCccCh--hhcCCCCCCEEecCCCCCCc-ccCccccCCCcccceee
Q 037947 591 CV-LGD---VATVGAL------KKLVILSFRNSHIEQLPE--EIGQLTRLKLLDLSNCSKLK-SIRPNVISNLPRLEELY 657 (780)
Q Consensus 591 ~~-~~~---~~~i~~l------~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~-~~~~~~l~~l~~L~~L~ 657 (780)
|. ++. |..++++ .+|++|++++|.+..+|. .++.+++|++|++++ +.++ .+| .++.+++|++|+
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~-N~l~g~ip--~~~~l~~L~~L~ 359 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY-NQLEGKLP--AFGSEIKLASLN 359 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCS-CCCEEECC--CCEEEEEESEEE
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcC-CcCccchh--hhCCCCCCCEEE
Confidence 65 542 4445544 666666666666666666 666666666666665 3444 443 355666666666
Q ss_pred ccCCCCccccccCCccchhhhcCCCC-CCEEEeeccCCCCCCccc---cccCccEEEEEecCcc----cccc-------c
Q 037947 658 MGNSFTHWEIEGQNNASLAELNQLSR-LTTLEMHILDAQVMPREL---FSVGLERYKIFLGDVW----SWTG-------K 722 (780)
Q Consensus 658 l~~~~~~~~~~~~~~~~l~~l~~L~~-L~~L~l~~~~~~~~~~~~---~~~~L~~L~i~~~~~~----~~~~-------~ 722 (780)
+++|.+. .++ ..+..+++ |+.|+++.|.+..+|..+ .+++|+.|++..+... .++. .
T Consensus 360 L~~N~l~-~lp-------~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 360 LAYNQIT-EIP-------ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp CCSSEEE-ECC-------TTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred CCCCccc-ccc-------HhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 6665332 111 23455555 666666666655555544 1234555555543321 1122 2
Q ss_pred ccccceeEeecCCCccchhHHHHHhcccceeeccc
Q 037947 723 YETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDK 757 (780)
Q Consensus 723 ~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 757 (780)
.+.++.|.|+.+.....+..+...+++|+.|+|++
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 23344444444333333444444345555555554
No 26
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.74 E-value=2.7e-17 Score=189.94 Aligned_cols=244 Identities=16% Similarity=0.150 Sum_probs=170.3
Q ss_pred CceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC-CccccCCCCCCEEEc
Q 037947 512 DPIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGCLINLQTLSF 588 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L 588 (780)
.+++|.+++|.+..++. +..+++|++|++++|.+....|. .|.++++|++|++++|.++.+ |..++.+++|++|++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED-TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChh-hccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 58999999999888753 34889999999999988754444 457899999999999998855 678889999999999
Q ss_pred cCccCCC--cccccccCCCcEEEeecCCCCccC-hhhcCCCCCCEEecCCCCCCcccCccccCCCcccc--eeeccCCCC
Q 037947 589 ECCVLGD--VATVGALKKLVILSFRNSHIEQLP-EEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLE--ELYMGNSFT 663 (780)
Q Consensus 589 ~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~--~L~l~~~~~ 663 (780)
++|.+.. +..++++.+|++|++++|.+..++ ..+..+++|++|++++ +.+..+++..++.+++|+ .|++++|..
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhhcccceeEEecCCCcc
Confidence 9999887 467889999999999999888763 3344588999999988 677777777778888888 777777654
Q ss_pred ccccccCCc--------------------------------------------------------------------cch
Q 037947 664 HWEIEGQNN--------------------------------------------------------------------ASL 675 (780)
Q Consensus 664 ~~~~~~~~~--------------------------------------------------------------------~~l 675 (780)
....++... ...
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 322111000 001
Q ss_pred hhhcCCCCCCEEEeeccCCCCCCccc-cccCccEEEEEecCcc----cccccccccceeEeecCCCc-cchhHHHHHhcc
Q 037947 676 AELNQLSRLTTLEMHILDAQVMPREL-FSVGLERYKIFLGDVW----SWTGKYETSRTLKLKLDNPM-YLEHGIKMLLRR 749 (780)
Q Consensus 676 ~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~i~~~~~~----~~~~~~~~l~~l~L~~~~~~-~~~~~~~~~l~~ 749 (780)
..+..+++|+.|+++.|.+..+|..+ .+++|++|.+..+... ..+..++.++.+.+..+... ..+......+++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 12556778888888888888887776 6777888887655432 23445555666665443322 112222223455
Q ss_pred cceeeccc
Q 037947 750 TEDLHLDK 757 (780)
Q Consensus 750 L~~L~l~~ 757 (780)
|+.|++++
T Consensus 352 L~~L~l~~ 359 (606)
T 3t6q_A 352 LRELDLSH 359 (606)
T ss_dssp CCEEECCS
T ss_pred CCEEECCC
Confidence 66666555
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.74 E-value=3.3e-17 Score=187.75 Aligned_cols=151 Identities=26% Similarity=0.313 Sum_probs=124.9
Q ss_pred CCceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCC-ccccCCCCCCEEE
Q 037947 511 KDPIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP-STLGCLINLQTLS 587 (780)
Q Consensus 511 ~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~ 587 (780)
..+++|.+++|.+..++. +..+++|++|++++|.+.. ++...|.++++|++|++++|.++.+| ..++.+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 358999999999888764 3489999999999998774 55556788999999999999998765 6889999999999
Q ss_pred ccCccCCCcc--cccccCCCcEEEeecCCCCc--cChhhcCCCCCCEEecCCCCCCcccCccccCCCccc----ceeecc
Q 037947 588 FECCVLGDVA--TVGALKKLVILSFRNSHIEQ--LPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRL----EELYMG 659 (780)
Q Consensus 588 L~~~~~~~~~--~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L----~~L~l~ 659 (780)
+++|.+..++ .++++.+|++|++++|.+.. +|..++++++|++|++++ +.++.+++..++.+++| ..|+++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTT-SCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcC-CccceecHHHccchhccchhhhhcccC
Confidence 9999988733 58999999999999998875 789999999999999998 67777766667777776 667776
Q ss_pred CCCC
Q 037947 660 NSFT 663 (780)
Q Consensus 660 ~~~~ 663 (780)
+|..
T Consensus 186 ~n~l 189 (570)
T 2z63_A 186 LNPM 189 (570)
T ss_dssp TCCC
T ss_pred CCCc
Confidence 6643
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.74 E-value=9.8e-18 Score=175.80 Aligned_cols=237 Identities=18% Similarity=0.204 Sum_probs=173.7
Q ss_pred CCceEEEccCCCCccCCCc--cCCCCccEEEeccCccccc--cCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEE
Q 037947 511 KDPIAISLPCRDIQELPER--LECPKLKLFFLFSKKLSLV--IPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTL 586 (780)
Q Consensus 511 ~~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~--~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L 586 (780)
..+++|.+.++.+..++.. ..+++|+.|++++|.+... .+..+ ..++.|++|++++|.++.+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 3588999999998888864 4889999999999887632 24444 46899999999999988888888999999999
Q ss_pred EccCccCCCc---ccccccCCCcEEEeecCCCCcc-ChhhcCCCCCCEEecCCCCCCcc-cCccccCCCcccceeeccCC
Q 037947 587 SFECCVLGDV---ATVGALKKLVILSFRNSHIEQL-PEEIGQLTRLKLLDLSNCSKLKS-IRPNVISNLPRLEELYMGNS 661 (780)
Q Consensus 587 ~L~~~~~~~~---~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~-~~~~~l~~l~~L~~L~l~~~ 661 (780)
++++|.+... ..+..+.+|++|++++|.+... |..+..+++|++|++++ +.+.. ..|..+..+++|++|++++|
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~Ls~n 185 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG-NSFQENFLPDIFTELRNLTFLDLSQC 185 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT-CEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC-CccccccchhHHhhCcCCCEEECCCC
Confidence 9999987762 4688899999999999988754 55678899999999998 45554 34566888999999999988
Q ss_pred CCccccccCCccchhhhcCCCCCCEEEeeccCCCCCCccc--cccCccEEEEEecCcc----cccccc-cccceeEeecC
Q 037947 662 FTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPREL--FSVGLERYKIFLGDVW----SWTGKY-ETSRTLKLKLD 734 (780)
Q Consensus 662 ~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~i~~~~~~----~~~~~~-~~l~~l~L~~~ 734 (780)
.+....+ ..+..+++|+.|+++.|.+..++... .+++|+.|++..+... ..+..+ +.++.+.|+.+
T Consensus 186 ~l~~~~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 186 QLEQLSP-------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CCCEECT-------TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred CcCCcCH-------HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCC
Confidence 5432222 45677889999999999888777643 6788999999776543 233444 36777777554
Q ss_pred CCccc--hhHHHHHhcccceeecc
Q 037947 735 NPMYL--EHGIKMLLRRTEDLHLD 756 (780)
Q Consensus 735 ~~~~~--~~~~~~~l~~L~~L~l~ 756 (780)
...-. ..++...+.+++.+.+.
T Consensus 259 ~~~~~c~~~~~~~~l~~~~~~~~~ 282 (306)
T 2z66_A 259 DFACTCEHQSFLQWIKDQRQLLVE 282 (306)
T ss_dssp CEECSGGGHHHHHHHHHTGGGBSC
T ss_pred CeecccChHHHHHHHHhhhhhhcc
Confidence 42111 22334445555555443
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=8e-17 Score=179.39 Aligned_cols=179 Identities=20% Similarity=0.253 Sum_probs=107.0
Q ss_pred CCCEEEccCccCCCcccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCC
Q 037947 582 NLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNS 661 (780)
Q Consensus 582 ~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 661 (780)
+|++|++++|.+..++.++.+.+|++|++++|.+..++. ++.+++|++|++++ +.++.++ .+..+++|++|++++|
T Consensus 178 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-n~l~~~~--~l~~l~~L~~L~l~~n 253 (466)
T 1o6v_A 178 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNG-NQLKDIG--TLASLTNLTDLDLANN 253 (466)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCS-SCCCCCG--GGGGCTTCSEEECCSS
T ss_pred CCCEEECcCCcCCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCC-CCcccch--hhhcCCCCCEEECCCC
Confidence 333333333333333334444444444444444444333 34444445555444 2333331 2445555555555555
Q ss_pred CCccccccCCccchhhhcCCCCCCEEEeeccCCCCCCccccccCccEEEEEecCcccc--cccccccceeEeecCCCccc
Q 037947 662 FTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVWSW--TGKYETSRTLKLKLDNPMYL 739 (780)
Q Consensus 662 ~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~--~~~~~~l~~l~L~~~~~~~~ 739 (780)
... .+..+..+++|+.|+++.|.+..++....+++|+.|++..+..... +..++.++.+.|+.+.....
T Consensus 254 ~l~---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ 324 (466)
T 1o6v_A 254 QIS---------NLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 324 (466)
T ss_dssp CCC---------CCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC
T ss_pred ccc---------cchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCc
Confidence 321 1223778899999999999988887744889999999987664432 56677888888877654443
Q ss_pred hhHHHHHhcccceeeccccccccccccccCCCcccCccCC
Q 037947 740 EHGIKMLLRRTEDLHLDKLNGFQNVLHELDGEGFPRLKHL 779 (780)
Q Consensus 740 ~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L~~L 779 (780)
+. ...+++|+.|+++++ .+..++ . -..+++|+.|
T Consensus 325 ~~--~~~l~~L~~L~l~~n-~l~~~~-~--l~~l~~L~~L 358 (466)
T 1o6v_A 325 SP--VSSLTKLQRLFFYNN-KVSDVS-S--LANLTNINWL 358 (466)
T ss_dssp GG--GGGCTTCCEEECCSS-CCCCCG-G--GTTCTTCCEE
T ss_pred hh--hccCccCCEeECCCC-ccCCch-h--hccCCCCCEE
Confidence 32 346799999999995 666653 2 2457777765
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.73 E-value=6e-17 Score=171.74 Aligned_cols=239 Identities=17% Similarity=0.208 Sum_probs=186.6
Q ss_pred ceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC-CccccCCCCCCEEEccCc
Q 037947 513 PIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGCLINLQTLSFECC 591 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 591 (780)
.+.+.+.++.+..+|... .++++.|++++|.+.. ++...+.+++.|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 33 l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n 110 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110 (330)
T ss_dssp TTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred CeEEEecCCCccccCccC-CCCCeEEECCCCcCCE-eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence 567888888888887643 4789999999999874 5555568899999999999999977 788999999999999999
Q ss_pred cCCC-cccccccCCCcEEEeecCCCCccCh-hhcCCCCCCEEecCCCCCCcc--cCccccCCCcccceeeccCCCCcccc
Q 037947 592 VLGD-VATVGALKKLVILSFRNSHIEQLPE-EIGQLTRLKLLDLSNCSKLKS--IRPNVISNLPRLEELYMGNSFTHWEI 667 (780)
Q Consensus 592 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~~ 667 (780)
.++. +..+. .+|++|++++|.+..+|. .+..+++|++|++++ +.+.. ..+..+..+++|++|++++|.+.. +
T Consensus 111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l 186 (330)
T 1xku_A 111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-NPLKSSGIENGAFQGMKKLSYIRIADTNITT-I 186 (330)
T ss_dssp CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS-SCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-C
T ss_pred cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCC-CcCCccCcChhhccCCCCcCEEECCCCcccc-C
Confidence 9887 44443 799999999999998876 578999999999998 55543 556668899999999999986432 1
Q ss_pred ccCCccchhhhcCCCCCCEEEeeccCCCCCCc-cc-cccCccEEEEEecCcc----cccccccccceeEeecCCCccchh
Q 037947 668 EGQNNASLAELNQLSRLTTLEMHILDAQVMPR-EL-FSVGLERYKIFLGDVW----SWTGKYETSRTLKLKLDNPMYLEH 741 (780)
Q Consensus 668 ~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~i~~~~~~----~~~~~~~~l~~l~L~~~~~~~~~~ 741 (780)
+ . .+ .++|+.|+++.|.+..++. .+ .+++|++|.+..+... .++..++.++.+.|+.+.....+.
T Consensus 187 ~----~---~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 257 (330)
T 1xku_A 187 P----Q---GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257 (330)
T ss_dssp C----S---SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT
T ss_pred C----c---cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh
Confidence 1 1 11 2689999999999887644 34 7889999999876543 346677888888887776555555
Q ss_pred HHHHHhcccceeecccccccccccccc
Q 037947 742 GIKMLLRRTEDLHLDKLNGFQNVLHEL 768 (780)
Q Consensus 742 ~~~~~l~~L~~L~l~~~~~l~~~~~~~ 768 (780)
++. .+++|+.|++++ +.++.++...
T Consensus 258 ~l~-~l~~L~~L~l~~-N~i~~~~~~~ 282 (330)
T 1xku_A 258 GLA-DHKYIQVVYLHN-NNISAIGSND 282 (330)
T ss_dssp TTT-TCSSCCEEECCS-SCCCCCCTTS
T ss_pred hhc-cCCCcCEEECCC-CcCCccChhh
Confidence 543 368999999999 5677776543
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.73 E-value=1.2e-16 Score=182.37 Aligned_cols=147 Identities=12% Similarity=0.113 Sum_probs=86.8
Q ss_pred CCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCCC-CCccc-
Q 037947 624 QLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQV-MPREL- 701 (780)
Q Consensus 624 ~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~-~~~~~- 701 (780)
.+++|++|++++ +.++...|..++.+++|++|++++|.+.. .+.....+.++++|+.|+++.|.+.. +|...
T Consensus 351 ~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 351 SPSSFTFLNFTQ-NVFTDSVFQGCSTLKRLQTLILQRNGLKN-----FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp SCCCCCEEECCS-SCCCTTTTTTCCSCSSCCEEECCSSCCCB-----TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred CCCCceEEECCC-CccccchhhhhcccCCCCEEECCCCCcCC-----cccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 344555555555 34444333445555556666655553211 11111346677778888888777766 66553
Q ss_pred -cccCccEEEEEecCccc-ccccc-cccceeEeecCCCccchhHHHHHhcccceeeccccccccccccccCCCcccCccC
Q 037947 702 -FSVGLERYKIFLGDVWS-WTGKY-ETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDKLNGFQNVLHELDGEGFPRLKH 778 (780)
Q Consensus 702 -~~~~L~~L~i~~~~~~~-~~~~~-~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L~~ 778 (780)
.+++|+.|.+..+.... .+..+ +.++.+.|+.+.....+.++. .+++|+.|+|++ +.++.++... -..+++|+.
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~-N~l~~l~~~~-~~~l~~L~~ 501 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVT-HLQALQELNVAS-NQLKSVPDGV-FDRLTSLQY 501 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCS-SCCCCCCTTS-TTTCTTCCC
T ss_pred cCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhc-CCCCCCEEECCC-CCCCCCCHHH-HhcCCCCCE
Confidence 56778888887655421 12222 567777777665555565555 568899999988 5777777651 255777776
Q ss_pred C
Q 037947 779 L 779 (780)
Q Consensus 779 L 779 (780)
|
T Consensus 502 L 502 (562)
T 3a79_B 502 I 502 (562)
T ss_dssp E
T ss_pred E
Confidence 5
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.73 E-value=8.5e-17 Score=182.01 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=85.4
Q ss_pred CCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCCC-CCccc--
Q 037947 625 LTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQV-MPREL-- 701 (780)
Q Consensus 625 l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~-~~~~~-- 701 (780)
+++|++|++++ +.++...|..++.+++|++|++++|.+.. .+.....+..+++|+.|+++.|.+.. +|...
T Consensus 323 l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 323 ISPFLHLDFSN-NLLTDTVFENCGHLTELETLILQMNQLKE-----LSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp CCCCCEEECCS-SCCCTTTTTTCCCCSSCCEEECCSSCCCB-----HHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred CCcccEEEeEC-CccChhhhhhhccCCCCCEEEccCCccCc-----cccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 34444444444 23333223334455555555555443211 00111346778888888888888776 66653
Q ss_pred cccCccEEEEEecCccc-ccccc-cccceeEeecCCCccchhHHHHHhcccceeeccccccccccccccCCCcccCccCC
Q 037947 702 FSVGLERYKIFLGDVWS-WTGKY-ETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDKLNGFQNVLHELDGEGFPRLKHL 779 (780)
Q Consensus 702 ~~~~L~~L~i~~~~~~~-~~~~~-~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L~~L 779 (780)
.+++|+.|.+..+.... ..... +.++.|.|+.+.....+.++. .+++|+.|++++ +.+..++... -..+++|++|
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~-N~l~~l~~~~-~~~l~~L~~L 473 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVV-KLEALQELNVAS-NQLKSVPDGI-FDRLTSLQKI 473 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCS-SCCCCCCTTT-TTTCTTCCEE
T ss_pred cCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhh-cCCCCCEEECCC-CcCCccCHHH-hccCCcccEE
Confidence 56788888887665421 11122 567788887766555566555 568999999998 4777777551 2456777765
No 33
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=1.4e-16 Score=165.07 Aligned_cols=191 Identities=23% Similarity=0.338 Sum_probs=98.1
Q ss_pred ceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCC-CCCC-CccccCCCCCCEEEc
Q 037947 513 PIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFH-FPSL-PSTLGCLINLQTLSF 588 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~l-p~~i~~l~~L~~L~L 588 (780)
+++|.+.++.+..++. ...+++|+.|++++|.+....|. .+.+++.|++|++++|. +..+ |..+..+++|++|++
T Consensus 34 l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred ceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 5555555555555442 22455555555555555432222 23455555555555554 4444 445555555555555
Q ss_pred cCccCCC--cccccccCCCcEEEeecCCCCccChh-hcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCcc
Q 037947 589 ECCVLGD--VATVGALKKLVILSFRNSHIEQLPEE-IGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHW 665 (780)
Q Consensus 589 ~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 665 (780)
++|.+.. +..+.++.+|++|++++|.+..+|.. ++.+++|++|++++ +.++.+++..+..+++|++|++++|.+..
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCccccCEEECCCCcccc
Confidence 5555544 23355555555555555555555433 45555555555555 44555554445555555555555553321
Q ss_pred ccccCCccchhhhcCCCCCCEEEeeccCCCCCCccc--cccCccEEEEE
Q 037947 666 EIEGQNNASLAELNQLSRLTTLEMHILDAQVMPREL--FSVGLERYKIF 712 (780)
Q Consensus 666 ~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~i~ 712 (780)
.. ...+..+++|+.|+++.|.+..++... .+++|+.|++.
T Consensus 192 ~~-------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 233 (285)
T 1ozn_A 192 VH-------PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233 (285)
T ss_dssp EC-------TTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECC
T ss_pred cC-------HhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEecc
Confidence 11 123444555555555555555544432 44555555554
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.72 E-value=5e-17 Score=186.75 Aligned_cols=232 Identities=17% Similarity=0.158 Sum_probs=176.1
Q ss_pred CceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCcc-ccCCCCCCEEEc
Q 037947 512 DPIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPST-LGCLINLQTLSF 588 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L 588 (780)
.++.|.+.+|.+..++. +..+++|+.|++++|.+.+ +|+..|.+++.|++|+|++|.++.+|.. ++.+++|++|+|
T Consensus 76 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 58999999999988864 3489999999999999875 5656678999999999999999999876 489999999999
Q ss_pred cCccCCC--cccccccCCCcEEEeecCCCCccChhhcCCCCCCE------------------------------------
Q 037947 589 ECCVLGD--VATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKL------------------------------------ 630 (780)
Q Consensus 589 ~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~------------------------------------ 630 (780)
++|.+.. +..++.+.+|++|++++|.+..+|. +.+++|++
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~ 232 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNV 232 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCG--GGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCS
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcCh--hhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCC
Confidence 9999887 4579999999999999998887652 33333333
Q ss_pred ----EecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCCCCCccc-cccC
Q 037947 631 ----LDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPREL-FSVG 705 (780)
Q Consensus 631 ----L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~~ 705 (780)
|++++ +.++.. ..++.+++|++|++++|.+....+ ..+..+++|+.|+++.|.+..+|... .+++
T Consensus 233 ~L~~L~L~~-n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 302 (597)
T 3oja_B 233 ELTILKLQH-NNLTDT--AWLLNYPGLVEVDLSYNELEKIMY-------HPFVKMQRLERLYISNNRLVALNLYGQPIPT 302 (597)
T ss_dssp CCCEEECCS-SCCCCC--GGGGGCTTCSEEECCSSCCCEEES-------GGGTTCSSCCEEECTTSCCCEEECSSSCCTT
T ss_pred CCCEEECCC-CCCCCC--hhhccCCCCCEEECCCCccCCCCH-------HHhcCccCCCEEECCCCCCCCCCcccccCCC
Confidence 33333 223322 236677788888888775433222 56778889999999999888887776 6889
Q ss_pred ccEEEEEecCcc---cccccccccceeEeecCCCccchhHHHHHhcccceeeccccc
Q 037947 706 LERYKIFLGDVW---SWTGKYETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDKLN 759 (780)
Q Consensus 706 L~~L~i~~~~~~---~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 759 (780)
|+.|++..+... .++..++.++.|.|+.+.....+. ..+++|+.|+|++++
T Consensus 303 L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 303 LKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLKL---STHHTLKNLTLSHND 356 (597)
T ss_dssp CCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCCC---CTTCCCSEEECCSSC
T ss_pred CcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcCh---hhcCCCCEEEeeCCC
Confidence 999999876543 345567778888887765444432 246899999998854
No 35
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.72 E-value=8.9e-17 Score=190.21 Aligned_cols=252 Identities=19% Similarity=0.180 Sum_probs=193.4
Q ss_pred CceEEEccCCCCc-cCCCcc-CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCC-CCCccccCCCCCCEEEc
Q 037947 512 DPIAISLPCRDIQ-ELPERL-ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGCLINLQTLSF 588 (780)
Q Consensus 512 ~~~~l~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~L 588 (780)
..+.|.+.+|.+. .+|... .+++|+.|++++|.+.+.+|..+ ..++.|++|++++|.++ .+|..++.+++|++|++
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 4788888888776 445433 78999999999999887777664 77899999999999988 67889999999999999
Q ss_pred cCccCCC--cccccccCCCcEEEeecCCCC-ccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCcc
Q 037947 589 ECCVLGD--VATVGALKKLVILSFRNSHIE-QLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHW 665 (780)
Q Consensus 589 ~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~ 665 (780)
++|.+.. |..++++++|++|++++|.+. .+|..++.+++|++|++++ +.+....|..++.+++|+.|++++|.+.+
T Consensus 474 ~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSN-NSFSGNIPAELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS-SCCEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCC-CcccCcCCHHHcCCCCCCEEECCCCccCC
Confidence 9999875 678999999999999999887 7899999999999999999 56665556678999999999999886543
Q ss_pred ccccCCc---------------------------------------------------------------cchhhhcCCC
Q 037947 666 EIEGQNN---------------------------------------------------------------ASLAELNQLS 682 (780)
Q Consensus 666 ~~~~~~~---------------------------------------------------------------~~l~~l~~L~ 682 (780)
.++.... .....+..++
T Consensus 553 ~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~ 632 (768)
T 3rgz_A 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNG 632 (768)
T ss_dssp BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSB
T ss_pred cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccc
Confidence 3321100 0011345567
Q ss_pred CCCEEEeeccCCC-CCCccc-cccCccEEEEEecC----cccccccccccceeEeecCCCccchhHHHHHhcccceeecc
Q 037947 683 RLTTLEMHILDAQ-VMPREL-FSVGLERYKIFLGD----VWSWTGKYETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLD 756 (780)
Q Consensus 683 ~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~i~~~~----~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~ 756 (780)
+|+.|+++.|.+. .+|..+ .+++|+.|++..+. .+..++.++.++.|+|+.+......+.....+++|+.|+++
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 8999999999866 577777 78999999998754 34557778888888887766543322233446899999999
Q ss_pred ccccccccc
Q 037947 757 KLNGFQNVL 765 (780)
Q Consensus 757 ~~~~l~~~~ 765 (780)
+++--..+|
T Consensus 713 ~N~l~g~iP 721 (768)
T 3rgz_A 713 NNNLSGPIP 721 (768)
T ss_dssp SSEEEEECC
T ss_pred CCcccccCC
Confidence 854323344
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.72 E-value=1.9e-16 Score=167.85 Aligned_cols=235 Identities=15% Similarity=0.178 Sum_probs=178.3
Q ss_pred CCceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEc
Q 037947 511 KDPIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSF 588 (780)
Q Consensus 511 ~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L 588 (780)
..++.|.+.++.+..++. ...+++|++|++++|.+....|.. +..+++|++|++++|.++.+|..+. ++|++|++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l 128 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQLKELPEKMP--KTLQELRV 128 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEEC
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEEECCCCcCCccChhhc--ccccEEEC
Confidence 358899999999988875 348999999999999987554554 5789999999999999999888765 79999999
Q ss_pred cCccCCC--cccccccCCCcEEEeecCCCC---ccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCC
Q 037947 589 ECCVLGD--VATVGALKKLVILSFRNSHIE---QLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFT 663 (780)
Q Consensus 589 ~~~~~~~--~~~i~~l~~L~~L~l~~~~l~---~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 663 (780)
++|.+.. +..+.++.+|++|++++|.+. ..|..+..+++|++|++++ +.++.+|.. + .++|++|++++|.+
T Consensus 129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~~-~--~~~L~~L~l~~n~l 204 (330)
T 1xku_A 129 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD-TNITTIPQG-L--PPSLTELHLDGNKI 204 (330)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCSCCSS-C--CTTCSEEECTTSCC
T ss_pred CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCC-CccccCCcc-c--cccCCEEECCCCcC
Confidence 9999887 345888999999999999876 3467788899999999998 677777554 2 27899999988854
Q ss_pred ccccccCCccchhhhcCCCCCCEEEeeccCCCCCCcc-c-cccCccEEEEEecCc---ccccccccccceeEeecCCCcc
Q 037947 664 HWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPRE-L-FSVGLERYKIFLGDV---WSWTGKYETSRTLKLKLDNPMY 738 (780)
Q Consensus 664 ~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~i~~~~~---~~~~~~~~~l~~l~L~~~~~~~ 738 (780)
.... ...+..+++|+.|+++.|.+..++.. + .+++|++|++..+.. +.++..++.++.+.+..+....
T Consensus 205 ~~~~-------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~ 277 (330)
T 1xku_A 205 TKVD-------AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISA 277 (330)
T ss_dssp CEEC-------TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCC
T ss_pred CccC-------HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCc
Confidence 3221 24577888899999998888776653 3 678899999877654 3445667777888876655333
Q ss_pred chhHHH------HHhcccceeeccccc
Q 037947 739 LEHGIK------MLLRRTEDLHLDKLN 759 (780)
Q Consensus 739 ~~~~~~------~~l~~L~~L~l~~~~ 759 (780)
.+.... ..+++|+.|++.+++
T Consensus 278 ~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 278 IGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred cChhhcCCcccccccccccceEeecCc
Confidence 322211 124678889998855
No 37
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.72 E-value=4.1e-17 Score=185.98 Aligned_cols=147 Identities=20% Similarity=0.297 Sum_probs=113.1
Q ss_pred CCceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCcc-ccCCCCCCEEE
Q 037947 511 KDPIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPST-LGCLINLQTLS 587 (780)
Q Consensus 511 ~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~ 587 (780)
..+++|.+++|.+..++. ...+++|++|++++|.+.. ++...|.++++|++|++++|.++.+|.. ++.+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 358899999988887743 3488999999999998875 4444467899999999999999877654 88999999999
Q ss_pred ccCccCCC---cccccccCCCcEEEeecCC-CCccC-hhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeecc
Q 037947 588 FECCVLGD---VATVGALKKLVILSFRNSH-IEQLP-EEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMG 659 (780)
Q Consensus 588 L~~~~~~~---~~~i~~l~~L~~L~l~~~~-l~~lp-~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~ 659 (780)
+++|.+.. +..++++.+|++|++++|. +..+| ..+..+++|++|++++ +.++...|..++.+++|++|+++
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA-LSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE-TTCCEECTTTTTTCSEEEEEEEE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccC-CcccccChhhhhccccCceEecc
Confidence 99998864 4678899999999999886 67776 4788889999999888 45665545555555444444443
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.72 E-value=8.1e-17 Score=178.95 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=122.8
Q ss_pred eEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCC-CC-CccccCCCCCCEEEccCc
Q 037947 514 IAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SL-PSTLGCLINLQTLSFECC 591 (780)
Q Consensus 514 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~l-p~~i~~l~~L~~L~L~~~ 591 (780)
+.+...++.+..+|. -.+++++|++++|.+....|. .+.+++.|++|++++|.+. .+ |..+..+++|++|++++|
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 345666777888887 348899999999998754454 4688999999999999986 44 567999999999999999
Q ss_pred cCCC--cccccccCCCcEEEeecCCCCc-cChh--hcCCCCCCEEecCCCCCCcccCccc-cCCCcccceeeccCCCCc
Q 037947 592 VLGD--VATVGALKKLVILSFRNSHIEQ-LPEE--IGQLTRLKLLDLSNCSKLKSIRPNV-ISNLPRLEELYMGNSFTH 664 (780)
Q Consensus 592 ~~~~--~~~i~~l~~L~~L~l~~~~l~~-lp~~--i~~l~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~~ 664 (780)
.+.. +..++++.+|++|++++|.+.. +|.. ++.+++|++|++++ +.+..++|.. ++.+++|++|++++|.+.
T Consensus 90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRD-NNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCS-SBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCC-CccCccCcccccCCCCcccEEeCCCCccc
Confidence 9877 6689999999999999999885 4554 89999999999999 6677775554 789999999999998654
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.72 E-value=8.5e-17 Score=170.71 Aligned_cols=234 Identities=19% Similarity=0.189 Sum_probs=160.0
Q ss_pred CceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEcc
Q 037947 512 DPIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFE 589 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 589 (780)
.++.|.+.++.+..++. ...+++|+.|++++|.+....|. .+.++++|++|++++|.++.+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK-AFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGG-GSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHh-HhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 46777777777776643 33777788888887777643343 35677788888888887777776665 678888888
Q ss_pred CccCCCc--ccccccCCCcEEEeecCCCC---ccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCc
Q 037947 590 CCVLGDV--ATVGALKKLVILSFRNSHIE---QLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTH 664 (780)
Q Consensus 590 ~~~~~~~--~~i~~l~~L~~L~l~~~~l~---~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 664 (780)
+|.+..+ ..++.+++|++|++++|.++ ..|..+..+ +|++|++++ +.++.+|.. +. ++|++|++++|.+.
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~-n~l~~l~~~-~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE-AKLTGIPKD-LP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS-SBCSSCCSS-SC--SSCSCCBCCSSCCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC-CCCCccCcc-cc--CCCCEEECCCCcCC
Confidence 8777662 34777788888888877765 335556666 778888877 566666543 22 67888888877543
Q ss_pred cccccCCccchhhhcCCCCCCEEEeeccCCCCCCcc-c-cccCccEEEEEecCc---ccccccccccceeEeecCCCccc
Q 037947 665 WEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPRE-L-FSVGLERYKIFLGDV---WSWTGKYETSRTLKLKLDNPMYL 739 (780)
Q Consensus 665 ~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~i~~~~~---~~~~~~~~~l~~l~L~~~~~~~~ 739 (780)
... ...+..+++|+.|+++.|.+..++.. + .+++|+.|++..+.. +.++..++.++.+.++.+.....
T Consensus 207 ~~~-------~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~ 279 (332)
T 2ft3_A 207 AIE-------LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKV 279 (332)
T ss_dssp CCC-------TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBC
T ss_pred ccC-------HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCcc
Confidence 211 14567788899999999988887764 3 788999999987654 34466677788888876554333
Q ss_pred hhHHH-H-----Hhcccceeecccccc
Q 037947 740 EHGIK-M-----LLRRTEDLHLDKLNG 760 (780)
Q Consensus 740 ~~~~~-~-----~l~~L~~L~l~~~~~ 760 (780)
+.... . .+++|+.|++.+++-
T Consensus 280 ~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 280 GVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred ChhHccccccccccccccceEeecCcc
Confidence 22211 1 146789999998653
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.72 E-value=2.1e-16 Score=174.64 Aligned_cols=240 Identities=14% Similarity=0.084 Sum_probs=136.7
Q ss_pred CceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCc
Q 037947 512 DPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECC 591 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 591 (780)
.+++|.+.++.+..+|....+++|+.|++++|.+.+ +| +..++.|++|++++|.++.+| ++.+++|++|++++|
T Consensus 43 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN 116 (457)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS
T ss_pred CCCEEEccCCCcccChhhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC
Confidence 466777777777666655567777777777776654 33 456677777777777776654 666777777777777
Q ss_pred cCCCcccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCcccccc--
Q 037947 592 VLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEG-- 669 (780)
Q Consensus 592 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-- 669 (780)
.+..++ ++.+++|++|++++|.++.+| ++.+++|++|++++|..+..++ ++.+++|++|++++|.+....-+
T Consensus 117 ~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~l~~l 190 (457)
T 3bz5_A 117 KLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELDVSQN 190 (457)
T ss_dssp CCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCCCTTC
T ss_pred cCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceeccccC
Confidence 666643 666777777777777666664 5566666666666644444441 44555555555555533210000
Q ss_pred ----------CCccchhhhcCCCCCCEEEeeccCCCCCCccccccCccEEEEEecCcccc-cccccccceeEeecC----
Q 037947 670 ----------QNNASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVWSW-TGKYETSRTLKLKLD---- 734 (780)
Q Consensus 670 ----------~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~-~~~~~~l~~l~L~~~---- 734 (780)
..-..+ .+..+++|+.|+++.|.+..+| ...+++|+.|.+..+..... ...++.++.+.+..+
T Consensus 191 ~~L~~L~l~~N~l~~~-~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~ 268 (457)
T 3bz5_A 191 KLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLE 268 (457)
T ss_dssp TTCCEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSC
T ss_pred CCCCEEECcCCcCCee-ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCE
Confidence 000000 3556677777777777777766 22667777777765543221 233444444333211
Q ss_pred ----CCccchhHHHHHhcccceeeccccccccccc
Q 037947 735 ----NPMYLEHGIKMLLRRTEDLHLDKLNGFQNVL 765 (780)
Q Consensus 735 ----~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~ 765 (780)
++..........+++|+.|++++++.+..++
T Consensus 269 L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 269 IDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp CCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEE
T ss_pred EECCCCccCCcccccccccCCEEECCCCcccceec
Confidence 1111100001235778888888876655554
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.72 E-value=7.7e-17 Score=192.76 Aligned_cols=266 Identities=19% Similarity=0.174 Sum_probs=174.2
Q ss_pred CCceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC-CccccCCCCCCEEE
Q 037947 511 KDPIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGCLINLQTLS 587 (780)
Q Consensus 511 ~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~ 587 (780)
..+++|.+++|.+..++. ...+++|++|++++|.....+++..|.++++|++|+|++|.++.+ |..++.+++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 458999999999987743 348999999999999777778666779999999999999999865 88999999999999
Q ss_pred ccCccCCC--ccc--ccccCCCcEEEeecCCCCccC--hhhcCCCCCCEEecCCCCCCcccCccccCCC--cc-------
Q 037947 588 FECCVLGD--VAT--VGALKKLVILSFRNSHIEQLP--EEIGQLTRLKLLDLSNCSKLKSIRPNVISNL--PR------- 652 (780)
Q Consensus 588 L~~~~~~~--~~~--i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l--~~------- 652 (780)
|++|.+.. +.. ++++++|++|++++|.+..++ ..++++++|++|++++ +.++...+..++.+ ++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~-N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS-NQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES-SCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC-CcCCeeCHHHcccccCCccceEECC
Confidence 99999876 544 899999999999999988763 5799999999999998 55555444444333 33
Q ss_pred -----------------------cceeeccCCCCccccccCCcc-----------------------------chhhhcC
Q 037947 653 -----------------------LEELYMGNSFTHWEIEGQNNA-----------------------------SLAELNQ 680 (780)
Q Consensus 653 -----------------------L~~L~l~~~~~~~~~~~~~~~-----------------------------~l~~l~~ 680 (780)
|++|++++|......+..... ....+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 555555554321111100000 0001111
Q ss_pred --CCCCCEEEeeccCCCCCCccc--cccCccEEEEEecCcc----cccccccccceeEeecCCCccchhHHHHHhcccce
Q 037947 681 --LSRLTTLEMHILDAQVMPREL--FSVGLERYKIFLGDVW----SWTGKYETSRTLKLKLDNPMYLEHGIKMLLRRTED 752 (780)
Q Consensus 681 --L~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~i~~~~~~----~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~ 752 (780)
.++|+.|+++.|.+..++... .+++|+.|++..+... ..+..++.++.|.|+.+............+++|+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 342 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAY 342 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCE
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCE
Confidence 145667777666655544332 5666777777655432 23445566666666555433332222223566777
Q ss_pred eeccccccccccccccCCCcccCccCC
Q 037947 753 LHLDKLNGFQNVLHELDGEGFPRLKHL 779 (780)
Q Consensus 753 L~l~~~~~l~~~~~~~~~~~fp~L~~L 779 (780)
|+++++ .+..++... -.++++|++|
T Consensus 343 L~L~~N-~i~~~~~~~-~~~l~~L~~L 367 (844)
T 3j0a_A 343 IDLQKN-HIAIIQDQT-FKFLEKLQTL 367 (844)
T ss_dssp EECCSC-CCCCCCSSC-SCSCCCCCEE
T ss_pred EECCCC-CCCccChhh-hcCCCCCCEE
Confidence 777663 444444321 1334555544
No 42
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.72 E-value=7.5e-17 Score=190.82 Aligned_cols=256 Identities=19% Similarity=0.202 Sum_probs=185.7
Q ss_pred CceEEEccCCCCcc-CCCcc-C--CCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCC-CCCccccCCCCCCEE
Q 037947 512 DPIAISLPCRDIQE-LPERL-E--CPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGCLINLQTL 586 (780)
Q Consensus 512 ~~~~l~l~~~~~~~-~~~~~-~--~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L 586 (780)
..+.|.+.+|.+.. ++... . +++|+.|++++|.+.+.+|..+ ..++.|++|++++|.++ .+|..++.+++|++|
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 447 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence 46777777776542 23222 2 6788999999998887777664 77899999999999887 678889999999999
Q ss_pred EccCccCCC--cccccccCCCcEEEeecCCCC-ccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCC
Q 037947 587 SFECCVLGD--VATVGALKKLVILSFRNSHIE-QLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFT 663 (780)
Q Consensus 587 ~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 663 (780)
++++|.+.. |..++.+.+|++|++++|.+. .+|..++.+++|++|++++ +.+....|..++.+++|++|++++|.+
T Consensus 448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l 526 (768)
T 3rgz_A 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN-NRLTGEIPKWIGRLENLAILKLSNNSF 526 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS-SCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccC-CccCCcCChHHhcCCCCCEEECCCCcc
Confidence 999998875 678899999999999999887 6788999999999999998 566655566789999999999999865
Q ss_pred ccccccCCccchhhhcCCCCCCEEEeeccCCC-CCCccc-----------------------------------------
Q 037947 664 HWEIEGQNNASLAELNQLSRLTTLEMHILDAQ-VMPREL----------------------------------------- 701 (780)
Q Consensus 664 ~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~-~~~~~~----------------------------------------- 701 (780)
...++ ..+..+++|+.|+++.|... .+|..+
T Consensus 527 ~~~~p-------~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 527 SGNIP-------AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp EEECC-------GGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred cCcCC-------HHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 44333 56788899999999888654 344322
Q ss_pred ------------------------------cccCccEEEEEecC----cccccccccccceeEeecCCCccc-hhHHHHH
Q 037947 702 ------------------------------FSVGLERYKIFLGD----VWSWTGKYETSRTLKLKLDNPMYL-EHGIKML 746 (780)
Q Consensus 702 ------------------------------~~~~L~~L~i~~~~----~~~~~~~~~~l~~l~L~~~~~~~~-~~~~~~~ 746 (780)
.+++|+.|++..+. .+..++.++.++.|.|+.+..... |..+ ..
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l-~~ 678 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV-GD 678 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-GG
T ss_pred cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH-hC
Confidence 13456677776543 344566677777777766654433 4433 34
Q ss_pred hcccceeeccccccccccccccCCCcccCccCC
Q 037947 747 LRRTEDLHLDKLNGFQNVLHELDGEGFPRLKHL 779 (780)
Q Consensus 747 l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L~~L 779 (780)
+++|+.|+|+++.-...+|..+ ..+++|++|
T Consensus 679 L~~L~~LdLs~N~l~g~ip~~l--~~l~~L~~L 709 (768)
T 3rgz_A 679 LRGLNILDLSSNKLDGRIPQAM--SALTMLTEI 709 (768)
T ss_dssp CTTCCEEECCSSCCEECCCGGG--GGCCCCSEE
T ss_pred CCCCCEEECCCCcccCcCChHH--hCCCCCCEE
Confidence 5888888888843323455444 445566554
No 43
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.71 E-value=1.3e-16 Score=184.27 Aligned_cols=180 Identities=19% Similarity=0.239 Sum_probs=140.2
Q ss_pred eEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC-CccccCCCCCCEEEccCcc
Q 037947 514 IAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGCLINLQTLSFECCV 592 (780)
Q Consensus 514 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~ 592 (780)
+.+...++.+..+|.... ++++.|++++|.+.. ++...|.++++|++|++++|.++.+ |..++++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPLKI-LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp TEEECTTSCCSSCCTTSC-TTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CceEccCCCcccCCCCCC-CCcCEEECCCCCcCE-eChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 457777888888887543 889999999999875 4554568999999999999999976 6689999999999999999
Q ss_pred CCC--cccccccCCCcEEEeecCCCCccC-hhhcCCCCCCEEecCCCCCCcccC-ccccCCCcccceeeccCCCCccccc
Q 037947 593 LGD--VATVGALKKLVILSFRNSHIEQLP-EEIGQLTRLKLLDLSNCSKLKSIR-PNVISNLPRLEELYMGNSFTHWEIE 668 (780)
Q Consensus 593 ~~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~ 668 (780)
+.. |..++++.+|++|++++|.+..+| ..++.+++|++|++++ +.+.... |..++++++|++|++++|......
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~- 169 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT- 169 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCS-SCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC-
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCC-CcccceechHhHhhcCCCCEEEccCCcceecC-
Confidence 877 578999999999999999999887 6799999999999999 5666422 566899999999999998654322
Q ss_pred cCCccchhhhcCCCC-CCEEEeeccCCCCCCcc
Q 037947 669 GQNNASLAELNQLSR-LTTLEMHILDAQVMPRE 700 (780)
Q Consensus 669 ~~~~~~l~~l~~L~~-L~~L~l~~~~~~~~~~~ 700 (780)
+..+..+.+++. +..|+++.|.+..++..
T Consensus 170 ---~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~ 199 (606)
T 3vq2_A 170 ---VNDLQFLRENPQVNLSLDMSLNPIDFIQDQ 199 (606)
T ss_dssp ---TTTTHHHHHCTTCCCEEECTTCCCCEECTT
T ss_pred ---hhhhhhhhccccccceeeccCCCcceeCcc
Confidence 223344444433 44555555554444433
No 44
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.71 E-value=4.4e-17 Score=185.78 Aligned_cols=180 Identities=20% Similarity=0.186 Sum_probs=141.2
Q ss_pred EEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCC-ccccCCCCCCEEEccCccCC
Q 037947 516 ISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP-STLGCLINLQTLSFECCVLG 594 (780)
Q Consensus 516 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~ 594 (780)
....++.+..+|... .+++++|++++|.+....|. .+.++++|++|++++|.++.+| ..++.+++|++|++++|.+.
T Consensus 10 c~~~~~~l~~ip~~~-~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~ 87 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TAAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87 (549)
T ss_dssp EECTTSCCSSCCSCC-CTTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred EECCCCccccccccC-CCCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC
Confidence 455667788888754 37999999999998755454 4588999999999999999764 68999999999999999998
Q ss_pred C-cc-cccccCCCcEEEeecCCCCc--cChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccC
Q 037947 595 D-VA-TVGALKKLVILSFRNSHIEQ--LPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQ 670 (780)
Q Consensus 595 ~-~~-~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 670 (780)
. ++ .++++.+|++|++++|.+.. .|..++.+++|++|++++|..+..+++..++.+++|++|++++|......+..
T Consensus 88 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT
T ss_pred ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh
Confidence 8 43 49999999999999999985 46789999999999999966588888777999999999999998654322211
Q ss_pred Cc---------------cchh--hhcCCCCCCEEEeeccCCCCC
Q 037947 671 NN---------------ASLA--ELNQLSRLTTLEMHILDAQVM 697 (780)
Q Consensus 671 ~~---------------~~l~--~l~~L~~L~~L~l~~~~~~~~ 697 (780)
.. ..+. .+..+++|+.|+++.|.+..+
T Consensus 168 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 168 LKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp TTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred hhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 00 0000 013467788888887776554
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.71 E-value=2.1e-16 Score=167.67 Aligned_cols=233 Identities=16% Similarity=0.176 Sum_probs=181.1
Q ss_pred CceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCc-cccCCCCCCEEEc
Q 037947 512 DPIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGCLINLQTLSF 588 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L 588 (780)
..+.|.+.+|.+..++. ...+++|+.|++++|.+. .+|..++ +.|++|++++|.++.+|. .+..+++|++|++
T Consensus 79 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 154 (332)
T 2ft3_A 79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEM 154 (332)
T ss_dssp TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEEC
T ss_pred CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEEC
Confidence 48999999999988743 347999999999999887 6776553 899999999999998875 5889999999999
Q ss_pred cCccCCC----cccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCc
Q 037947 589 ECCVLGD----VATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTH 664 (780)
Q Consensus 589 ~~~~~~~----~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 664 (780)
++|.+.. +..+..+ +|++|++++|.+..+|..+. ++|++|++++ +.++.+++..+..+++|++|++++|.+.
T Consensus 155 ~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~L~~N~l~ 230 (332)
T 2ft3_A 155 GGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGHNQIR 230 (332)
T ss_dssp CSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCS-SCCCCCCTTSSTTCTTCSCCBCCSSCCC
T ss_pred CCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 9999853 5667777 99999999999999998665 7999999999 6888888778999999999999998653
Q ss_pred cccccCCccchhhhcCCCCCCEEEeeccCCCCCCccc-cccCccEEEEEecCcccc----cc------cccccceeEeec
Q 037947 665 WEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPREL-FSVGLERYKIFLGDVWSW----TG------KYETSRTLKLKL 733 (780)
Q Consensus 665 ~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~i~~~~~~~~----~~------~~~~l~~l~L~~ 733 (780)
...+ ..+..+++|+.|+++.|.+..+|..+ .+++|+.|.+..+..... +. ..+.++.+.+..
T Consensus 231 ~~~~-------~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~ 303 (332)
T 2ft3_A 231 MIEN-------GSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303 (332)
T ss_dssp CCCT-------TGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred cCCh-------hHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence 2221 35778899999999999999999887 789999999987654321 11 134456666655
Q ss_pred CCCc--cchhHHHHHhcccceeeccccc
Q 037947 734 DNPM--YLEHGIKMLLRRTEDLHLDKLN 759 (780)
Q Consensus 734 ~~~~--~~~~~~~~~l~~L~~L~l~~~~ 759 (780)
+... ..+......+++|+.|++.++.
T Consensus 304 N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 304 NPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CcccccccCcccccccchhhhhhccccc
Confidence 4432 2233334457888998888753
No 46
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=1.9e-16 Score=164.05 Aligned_cols=212 Identities=19% Similarity=0.261 Sum_probs=173.5
Q ss_pred eEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC-CccccCCCCCCEEEccCcc
Q 037947 514 IAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGCLINLQTLSFECCV 592 (780)
Q Consensus 514 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~ 592 (780)
+.+...++.+..+|.. -.++++.|++++|.+.. ++...+..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~-~~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG-IPAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTT-CCTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcC-CCCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 5677777788888753 35799999999999874 5555568899999999999999976 7789999999999999997
Q ss_pred -CCC--cccccccCCCcEEEeecCCCCcc-ChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccc
Q 037947 593 -LGD--VATVGALKKLVILSFRNSHIEQL-PEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIE 668 (780)
Q Consensus 593 -~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 668 (780)
+.. +..+..+.+|++|++++|.+..+ |..+..+++|++|++++ +.++.+++..++.+++|++|++++|.+.....
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 766 56789999999999999999887 56788999999999999 68888888778999999999999985532111
Q ss_pred cCCccchhhhcCCCCCCEEEeeccCCCCC-Cccc-cccCccEEEEEecCccc----ccccccccceeEeecCC
Q 037947 669 GQNNASLAELNQLSRLTTLEMHILDAQVM-PREL-FSVGLERYKIFLGDVWS----WTGKYETSRTLKLKLDN 735 (780)
Q Consensus 669 ~~~~~~l~~l~~L~~L~~L~l~~~~~~~~-~~~~-~~~~L~~L~i~~~~~~~----~~~~~~~l~~l~L~~~~ 735 (780)
..+..+++|+.|+++.|.+..+ |..+ .+++|+.|++..+.... ++..++.++.+.|..+.
T Consensus 171 -------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 171 -------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp -------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred -------HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 3477889999999999998776 4444 78899999998766432 35567778888886654
No 47
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=4.1e-16 Score=160.14 Aligned_cols=192 Identities=24% Similarity=0.327 Sum_probs=157.2
Q ss_pred ceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCcc-ccCCCCCCEEEccCc
Q 037947 513 PIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPST-LGCLINLQTLSFECC 591 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~ 591 (780)
.+.+.+.++.+..+|.... ++++.|++++|.+. .++...|.++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus 18 ~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCS-CCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCEEEccCCCCCccCCCCC-CCCCEEECcCCCCC-eeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 5678888888888886443 68999999999887 45655578899999999999999988765 478999999999999
Q ss_pred cCCC--cccccccCCCcEEEeecCCCCccCh-hhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccc
Q 037947 592 VLGD--VATVGALKKLVILSFRNSHIEQLPE-EIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIE 668 (780)
Q Consensus 592 ~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 668 (780)
.+.. +..+..+.+|++|++++|.+..+|. .+..+++|++|++++ +.++.+++..++.+++|++|++++|.+....+
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 9887 3457889999999999999998875 468999999999998 67888888778899999999999885432111
Q ss_pred cCCccchhhhcCCCCCCEEEeeccCCCCCCccc--cccCccEEEEEec
Q 037947 669 GQNNASLAELNQLSRLTTLEMHILDAQVMPREL--FSVGLERYKIFLG 714 (780)
Q Consensus 669 ~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~i~~~ 714 (780)
..+.++++|+.|+++.|.+..+|... .+++|+.|.+..+
T Consensus 175 -------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 175 -------GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp -------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred -------hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCC
Confidence 34677889999999999988888764 5778888888644
No 48
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=3.5e-16 Score=162.13 Aligned_cols=193 Identities=22% Similarity=0.226 Sum_probs=159.4
Q ss_pred CceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCc
Q 037947 512 DPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECC 591 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 591 (780)
..+.+.+.++.+..+|... .++++.|++++|.+... +...+..++.|++|++++|.++.+|.. +.+++|++|++++|
T Consensus 11 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDL-PKDTTILHLSENLLYTF-SLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN 87 (290)
T ss_dssp TCCEEECTTSCCSSCCSCC-CTTCCEEECTTSCCSEE-EGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS
T ss_pred CccEEECCCCCCCcCCCCC-CCCCCEEEcCCCcCCcc-CHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC
Confidence 4678888888888888654 37899999999998754 444568899999999999999987664 78999999999999
Q ss_pred cCCC-cccccccCCCcEEEeecCCCCccC-hhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCcccccc
Q 037947 592 VLGD-VATVGALKKLVILSFRNSHIEQLP-EEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEG 669 (780)
Q Consensus 592 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 669 (780)
.+.. |..+..+++|++|++++|.++.+| ..+..+++|++|++++ +.++.+++..+..+++|+.|++++|.+.....
T Consensus 88 ~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~- 165 (290)
T 1p9a_G 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELPA- 165 (290)
T ss_dssp CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT-
T ss_pred cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCccCH-
Confidence 9887 566889999999999999999987 4688999999999998 68888888878899999999999986532111
Q ss_pred CCccchhhhcCCCCCCEEEeeccCCCCCCccc-cccCccEEEEEecC
Q 037947 670 QNNASLAELNQLSRLTTLEMHILDAQVMPREL-FSVGLERYKIFLGD 715 (780)
Q Consensus 670 ~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~i~~~~ 715 (780)
..+.++++|+.|+++.|.+..+|..+ ...+|+.+.+.+++
T Consensus 166 ------~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 166 ------GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp ------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred ------HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 34577889999999999999998887 66788888886543
No 49
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.70 E-value=6.4e-16 Score=176.05 Aligned_cols=216 Identities=19% Similarity=0.140 Sum_probs=105.4
Q ss_pred CceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCc
Q 037947 512 DPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECC 591 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 591 (780)
.++.|.+.+|.+..+|. .+++|++|++++|.+. .+|. .+++|++|++++|.++.+|. .+.+|++|++++|
T Consensus 62 ~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 62 HITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred CCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence 35566666666655554 4556666666666554 3443 34566666666666665554 3455666666666
Q ss_pred cCCCcccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCC
Q 037947 592 VLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQN 671 (780)
Q Consensus 592 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 671 (780)
.++.++. .+++|++|++++|.+..+|. .+.+|+.|++++ +.++.+| ..+++|+.|++++|.+.. ++
T Consensus 132 ~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~-N~l~~l~----~~~~~L~~L~Ls~N~l~~-l~--- 197 (622)
T 3g06_A 132 QLTSLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYN-NQLTSLP----MLPSGLQELSVSDNQLAS-LP--- 197 (622)
T ss_dssp CCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCC----CCCTTCCEEECCSSCCSC-CC---
T ss_pred CCCcCCC--CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCC-CCCCCCc----ccCCCCcEEECCCCCCCC-CC---
Confidence 5555322 13556666666666665554 234455555554 3444443 234666777776664321 11
Q ss_pred ccchhhhcCCCCCCEEEeeccCCCCCCccccccCccEEEEEecCcccccccccccceeEeecCCCccchhHHHHHhcccc
Q 037947 672 NASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVWSWTGKYETSRTLKLKLDNPMYLEHGIKMLLRRTE 751 (780)
Q Consensus 672 ~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~ 751 (780)
. .+++|+.|+++.|.+..+|.. +++|+.|.+..+........+++++.|.|+.|....++. .+++|+
T Consensus 198 -~------~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L~~lp~~l~~L~~L~Ls~N~L~~lp~----~~~~L~ 264 (622)
T 3g06_A 198 -T------LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM----LPSGLL 264 (622)
T ss_dssp -C------CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC----CCTTCC
T ss_pred -C------ccchhhEEECcCCcccccCCC--CCCCCEEEccCCccCcCCCCCCcCcEEECCCCCCCcCCc----ccccCc
Confidence 0 123444444444444444432 244555555443333222333444444444433222222 234455
Q ss_pred eeeccccccccccc
Q 037947 752 DLHLDKLNGFQNVL 765 (780)
Q Consensus 752 ~L~l~~~~~l~~~~ 765 (780)
.|+|++ +.++.++
T Consensus 265 ~L~Ls~-N~L~~lp 277 (622)
T 3g06_A 265 SLSVYR-NQLTRLP 277 (622)
T ss_dssp EEECCS-SCCCSCC
T ss_pred EEeCCC-CCCCcCC
Confidence 555554 2444444
No 50
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.70 E-value=5.1e-16 Score=162.57 Aligned_cols=189 Identities=15% Similarity=0.217 Sum_probs=163.9
Q ss_pred CceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCc
Q 037947 512 DPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECC 591 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 591 (780)
.+++|.+.++.+..++....+++|+.|++++|.+.. ++. +..+++|++|++++|.++.+| .+..+++|++|++++|
T Consensus 42 ~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~-~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITD-LAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST 117 (308)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred CcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCC-Chh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC
Confidence 488999999999999877789999999999998874 444 688999999999999999876 6899999999999999
Q ss_pred cCCCcccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCC
Q 037947 592 VLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQN 671 (780)
Q Consensus 592 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 671 (780)
.+..++.++.+++|++|++++|.+..+|. +..+++|++|++++ +.++.+++ +..+++|++|++++|.+..
T Consensus 118 ~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~------ 187 (308)
T 1h6u_A 118 QITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGN-AQVSDLTP--LANLSKLTTLKADDNKISD------ 187 (308)
T ss_dssp CCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCC------
T ss_pred CCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccC-CcCCCChh--hcCCCCCCEEECCCCccCc------
Confidence 99997779999999999999999999887 89999999999999 57888765 7899999999999985421
Q ss_pred ccchhhhcCCCCCCEEEeeccCCCCCCccccccCccEEEEEecCcc
Q 037947 672 NASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVW 717 (780)
Q Consensus 672 ~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~ 717 (780)
+..+..+++|+.|+++.|.+..++....+++|+.|.+..+...
T Consensus 188 ---~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 188 ---ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp ---CGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEE
T ss_pred ---ChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeee
Confidence 1237889999999999999988886448899999999876543
No 51
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.70 E-value=2.9e-16 Score=181.20 Aligned_cols=241 Identities=16% Similarity=0.162 Sum_probs=141.8
Q ss_pred ceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC---CccccCCCCCCEEE
Q 037947 513 PIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL---PSTLGCLINLQTLS 587 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l---p~~i~~l~~L~~L~ 587 (780)
.++|.+.+|.+..++. ...+++|+.|++++|.+.+.+|...+..++.|++|++++|.++.. |..+..+++|++|+
T Consensus 303 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 382 (606)
T 3t6q_A 303 LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382 (606)
T ss_dssp CCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEE
T ss_pred CCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEE
Confidence 4555555555544422 124555555555555555455555455566666666666665533 44556666666666
Q ss_pred ccCccCCC--cccccccCCCcEEEeecCCCCcc-C-hhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCC
Q 037947 588 FECCVLGD--VATVGALKKLVILSFRNSHIEQL-P-EEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFT 663 (780)
Q Consensus 588 L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~l-p-~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 663 (780)
+++|.+.. +..++.+++|++|++++|.+... | ..+..+++|++|++++ +.+...++..++.+++|++|++++|.+
T Consensus 383 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l 461 (606)
T 3t6q_A 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH-SLLDISSEQLFDGLPALQHLNLQGNHF 461 (606)
T ss_dssp CCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT-CCCBTTCTTTTTTCTTCCEEECTTCBC
T ss_pred CCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC-CccCCcCHHHHhCCCCCCEEECCCCCC
Confidence 66666544 34566666666666666665543 2 2356666777777766 455555555566677777777776643
Q ss_pred ccccccCCccchhhhcCCCCCCEEEeeccCCCCCCc-cc-cccCccEEEEEecCcc----cccccccccceeEeecCCCc
Q 037947 664 HWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPR-EL-FSVGLERYKIFLGDVW----SWTGKYETSRTLKLKLDNPM 737 (780)
Q Consensus 664 ~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~i~~~~~~----~~~~~~~~l~~l~L~~~~~~ 737 (780)
.. ........+..+++|+.|+++.|.+..+++ .+ .+++|+.|++..+... .++..++.+ .+.|+.+...
T Consensus 462 ~~----~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 462 PK----GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp GG----GEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred Cc----cccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 21 011112346777888888888887776643 33 6778888888765532 334445555 5555555444
Q ss_pred cchhHHHHHhcccceeeccccc
Q 037947 738 YLEHGIKMLLRRTEDLHLDKLN 759 (780)
Q Consensus 738 ~~~~~~~~~l~~L~~L~l~~~~ 759 (780)
..++.....+++|+.|++++++
T Consensus 537 ~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 537 IILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCCGGGHHHHHTSSEEECTTCC
T ss_pred ccCHhhcccCCCCCEEeCCCCC
Confidence 4444444456888888888854
No 52
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.69 E-value=4e-16 Score=176.45 Aligned_cols=119 Identities=17% Similarity=0.262 Sum_probs=64.2
Q ss_pred CceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEcc
Q 037947 512 DPIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFE 589 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 589 (780)
.+++|.+++|.+..++. ...+++|++|++++|.+....|. .|.++++|++|++++|.++.+|.. .+++|++|+++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 35556665555555542 22555566666666555533232 235556666666666655555544 55566666666
Q ss_pred CccCCC---cccccccCCCcEEEeecCCCCccChhhcCCCCC--CEEecCC
Q 037947 590 CCVLGD---VATVGALKKLVILSFRNSHIEQLPEEIGQLTRL--KLLDLSN 635 (780)
Q Consensus 590 ~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L--~~L~l~~ 635 (780)
+|.+.. |..++++.+|++|++++|.+.. ..+..+++| ++|++++
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~ 147 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVL 147 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEE
T ss_pred CCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeec
Confidence 655543 3455566666666666555544 234445555 6666555
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=2.3e-16 Score=174.84 Aligned_cols=236 Identities=22% Similarity=0.223 Sum_probs=193.4
Q ss_pred ceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC-CccccCCCCCCEEEccCc
Q 037947 513 PIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGCLINLQTLSFECC 591 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 591 (780)
...+...+..+..+|... .++++.|++++|.+....| ..|.++++|++|+|++|.++.+ |..+..+++|++|+|++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENNIQMIQA-DTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCcCceECH-HHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 456777777888888643 3789999999999885444 4568999999999999999976 478899999999999999
Q ss_pred cCCC-c-ccccccCCCcEEEeecCCCCccCh-hhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccc
Q 037947 592 VLGD-V-ATVGALKKLVILSFRNSHIEQLPE-EIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIE 668 (780)
Q Consensus 592 ~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 668 (780)
.+.. + ..+..+.+|++|++++|.+..+|. .+..+++|++|++++|+.+..+++..+..+++|++|++++|.+..
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--- 210 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--- 210 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS---
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc---
Confidence 9887 3 458899999999999999999876 688999999999999999999988889999999999999985431
Q ss_pred cCCccchhhhcCCCCCCEEEeeccCCCCCCcc-c-cccCccEEEEEecCcc----cccccccccceeEeecCCCccchhH
Q 037947 669 GQNNASLAELNQLSRLTTLEMHILDAQVMPRE-L-FSVGLERYKIFLGDVW----SWTGKYETSRTLKLKLDNPMYLEHG 742 (780)
Q Consensus 669 ~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~i~~~~~~----~~~~~~~~l~~l~L~~~~~~~~~~~ 742 (780)
+..+..+++|+.|+++.|.+..++.. + .+++|+.|.+..+... ..+..++.++.|.|+.+.....+..
T Consensus 211 ------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 284 (452)
T 3zyi_A 211 ------MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284 (452)
T ss_dssp ------CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ------cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChH
Confidence 23577889999999999998887554 3 7889999999776542 3466778888888877765555555
Q ss_pred HHHHhcccceeeccccc
Q 037947 743 IKMLLRRTEDLHLDKLN 759 (780)
Q Consensus 743 ~~~~l~~L~~L~l~~~~ 759 (780)
....+++|+.|+|.+++
T Consensus 285 ~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 285 LFTPLRYLVELHLHHNP 301 (452)
T ss_dssp SSTTCTTCCEEECCSSC
T ss_pred HhccccCCCEEEccCCC
Confidence 44557899999998854
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=2.9e-16 Score=173.44 Aligned_cols=236 Identities=20% Similarity=0.280 Sum_probs=194.2
Q ss_pred ceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCC-ccccCCCCCCEEEccCc
Q 037947 513 PIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP-STLGCLINLQTLSFECC 591 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~ 591 (780)
.+.+...+..+..+|... .++++.|++++|.+.. ++...|.++++|++|+|++|.++.++ ..+..+++|++|+|++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 122 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI-STNTRLLNLHENQIQI-IKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN 122 (440)
T ss_dssp SCEEECCSCCCSSCCSCC-CTTCSEEECCSCCCCE-ECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred CCEEEeCCCCcCcCCCCC-CCCCcEEEccCCcCCe-eCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence 456777778888888654 3789999999999874 44455689999999999999999765 67899999999999999
Q ss_pred cCCCc--ccccccCCCcEEEeecCCCCccCh-hhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccc
Q 037947 592 VLGDV--ATVGALKKLVILSFRNSHIEQLPE-EIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIE 668 (780)
Q Consensus 592 ~~~~~--~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 668 (780)
.++.+ ..+..+.+|++|++++|.+..+|. .+..+++|++|++++|+.+..+++..+..+++|++|++++|.+.
T Consensus 123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~---- 198 (440)
T 3zyj_A 123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR---- 198 (440)
T ss_dssp CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----
T ss_pred cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc----
Confidence 99883 368999999999999999999876 68899999999999988999998888999999999999998543
Q ss_pred cCCccchhhhcCCCCCCEEEeeccCCCCCCcc-c-cccCccEEEEEecCcc----cccccccccceeEeecCCCccchhH
Q 037947 669 GQNNASLAELNQLSRLTTLEMHILDAQVMPRE-L-FSVGLERYKIFLGDVW----SWTGKYETSRTLKLKLDNPMYLEHG 742 (780)
Q Consensus 669 ~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~i~~~~~~----~~~~~~~~l~~l~L~~~~~~~~~~~ 742 (780)
.+..+..+++|+.|+++.|.+..++.. + .+++|++|.+..+... ..+..++.++.|.|+.+.....+..
T Consensus 199 -----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 273 (440)
T 3zyj_A 199 -----EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHD 273 (440)
T ss_dssp -----SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred -----cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChh
Confidence 123578889999999999998887544 3 7889999999776543 3466778888888877765555555
Q ss_pred HHHHhcccceeeccccc
Q 037947 743 IKMLLRRTEDLHLDKLN 759 (780)
Q Consensus 743 ~~~~l~~L~~L~l~~~~ 759 (780)
....+++|+.|+|.+++
T Consensus 274 ~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTSSCTTCCEEECCSSC
T ss_pred HhccccCCCEEEcCCCC
Confidence 55557899999998854
No 55
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.69 E-value=2.9e-16 Score=183.84 Aligned_cols=242 Identities=15% Similarity=0.150 Sum_probs=177.0
Q ss_pred CCceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCc-cccCCCCCCEEE
Q 037947 511 KDPIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGCLINLQTLS 587 (780)
Q Consensus 511 ~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~ 587 (780)
..+++|.++++.+..++. ...+++|++|++++|.+....|. .+.+++.|++|++++|.++.+|. .++.+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTT-HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHH-HHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 458999999999888875 34789999999999988754444 45789999999999999998876 588999999999
Q ss_pred ccCccCCC--cccccccCCCcEEEeecCCCCcc-ChhhcCCCCCCEEecCCCCCCcccCccccC--CCcccceeeccCCC
Q 037947 588 FECCVLGD--VATVGALKKLVILSFRNSHIEQL-PEEIGQLTRLKLLDLSNCSKLKSIRPNVIS--NLPRLEELYMGNSF 662 (780)
Q Consensus 588 L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~l~--~l~~L~~L~l~~~~ 662 (780)
+++|.+.. +..++++.+|++|++++|.+... |..++.+++|++|++++ +.++..++..++ .+++|++|++++|.
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN-NKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCS-SCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccC-CcccccCHHHhhccccccccEEECCCCc
Confidence 99998877 35789999999999999988765 45678899999999998 567777665443 56889999999885
Q ss_pred CccccccCCccchhhhcC------------------------CCCCCEEEeeccCCCCCCcc-c-cc--cCccEEEEEec
Q 037947 663 THWEIEGQNNASLAELNQ------------------------LSRLTTLEMHILDAQVMPRE-L-FS--VGLERYKIFLG 714 (780)
Q Consensus 663 ~~~~~~~~~~~~l~~l~~------------------------L~~L~~L~l~~~~~~~~~~~-~-~~--~~L~~L~i~~~ 714 (780)
.....+ ..+..+.+ .++|+.|+++.|.....+.. + .+ ++|+.|++..+
T Consensus 183 l~~~~~----~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n 258 (680)
T 1ziw_A 183 IKEFSP----GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258 (680)
T ss_dssp CCCBCT----TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS
T ss_pred ccccCh----hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCC
Confidence 432222 22222222 25678888887776554433 2 33 45888888765
Q ss_pred Cc----ccccccccccceeEeecCCCccchhHHHHHhcccceeecccc
Q 037947 715 DV----WSWTGKYETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDKL 758 (780)
Q Consensus 715 ~~----~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~ 758 (780)
.. +.++..++.++.+.+..+............+++|+.|++.++
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~ 306 (680)
T 1ziw_A 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS 306 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTC
T ss_pred CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccch
Confidence 43 244667777888888665544433333344688999998763
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=1.7e-16 Score=166.26 Aligned_cols=237 Identities=18% Similarity=0.167 Sum_probs=187.3
Q ss_pred eEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC---CccccCCCCCCEEEccC
Q 037947 514 IAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL---PSTLGCLINLQTLSFEC 590 (780)
Q Consensus 514 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l---p~~i~~l~~L~~L~L~~ 590 (780)
+.+...++.+..+|... .++++.|++++|.+. .+|..+|.+++.|++|++++|.++.. |..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCC-CCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 35777777888888643 378999999999987 68888789999999999999998855 67778899999999999
Q ss_pred ccCCC-cccccccCCCcEEEeecCCCCccCh--hhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCcccc
Q 037947 591 CVLGD-VATVGALKKLVILSFRNSHIEQLPE--EIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEI 667 (780)
Q Consensus 591 ~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 667 (780)
|.+.. +..+..+.+|++|++++|.+..+|. .+..+++|++|++++ +.+...++..++.+++|++|++++|.....
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~- 165 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFNGLSSLEVLKMAGNSFQEN- 165 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTT-SCCEECSTTTTTTCTTCCEEECTTCEEGGG-
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCC-CcCCccchhhcccCcCCCEEECCCCccccc-
Confidence 99887 6679999999999999999998875 789999999999999 677777777789999999999999854321
Q ss_pred ccCCccchhhhcCCCCCCEEEeeccCCCCCCc-cc-cccCccEEEEEecCccc----ccccccccceeEeecCCCccchh
Q 037947 668 EGQNNASLAELNQLSRLTTLEMHILDAQVMPR-EL-FSVGLERYKIFLGDVWS----WTGKYETSRTLKLKLDNPMYLEH 741 (780)
Q Consensus 668 ~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~-~~-~~~~L~~L~i~~~~~~~----~~~~~~~l~~l~L~~~~~~~~~~ 741 (780)
.....+..+++|+.|+++.|.+..++. .+ .+++|++|.+..+.... .+..++.++.+.|+.+.......
T Consensus 166 -----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 240 (306)
T 2z66_A 166 -----FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 240 (306)
T ss_dssp -----EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSS
T ss_pred -----cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCH
Confidence 112456788999999999999888744 44 78899999997765432 34566778888887665443322
Q ss_pred HHHHHh-cccceeeccccc
Q 037947 742 GIKMLL-RRTEDLHLDKLN 759 (780)
Q Consensus 742 ~~~~~l-~~L~~L~l~~~~ 759 (780)
.....+ ++|+.|+|++++
T Consensus 241 ~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 241 QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SSCCCCCTTCCEEECTTCC
T ss_pred HHHHhhhccCCEEEccCCC
Confidence 212223 489999999843
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=4.9e-16 Score=166.33 Aligned_cols=236 Identities=18% Similarity=0.248 Sum_probs=178.8
Q ss_pred CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCc-cccCCCCCCEEEccCccCCC--cccccccCCCcE
Q 037947 531 ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGCLINLQTLSFECCVLGD--VATVGALKKLVI 607 (780)
Q Consensus 531 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~ 607 (780)
.|+.....+++++.+. .+|..+ .+.|++|++++|.++.+|. .+..+++|++|++++|.+.. +..++++.+|++
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCeEeeCCCCCcc-cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 4555566777777766 678755 3689999999999998765 79999999999999999987 456999999999
Q ss_pred EEeecCCCCccChh-hcCCCCCCEEecCCCCCCcccCc-cccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCC
Q 037947 608 LSFRNSHIEQLPEE-IGQLTRLKLLDLSNCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLT 685 (780)
Q Consensus 608 L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~ 685 (780)
|++++|.++.+|.. ++.+++|++|++++ +.++.+++ ..++.+++|++|++++|.....+ ....+.++++|+
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~------~~~~~~~l~~L~ 177 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKI------QRKDFAGLTFLE 177 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE------CTTTTTTCCEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCcccccc------CHHHccCCCCCC
Confidence 99999999999987 89999999999999 67888876 56889999999999988421111 114577889999
Q ss_pred EEEeeccCCCCC-Cccc-cccCccEEEEEecCccc----ccccccccceeEeecCCCccch-------------------
Q 037947 686 TLEMHILDAQVM-PREL-FSVGLERYKIFLGDVWS----WTGKYETSRTLKLKLDNPMYLE------------------- 740 (780)
Q Consensus 686 ~L~l~~~~~~~~-~~~~-~~~~L~~L~i~~~~~~~----~~~~~~~l~~l~L~~~~~~~~~------------------- 740 (780)
.|+++.|.+..+ |..+ .+++|++|.+..+.... +...++.++.+.++.+.....+
T Consensus 178 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~ 257 (353)
T 2z80_A 178 ELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR 257 (353)
T ss_dssp EEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred EEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence 999999987776 4444 78899999998766432 1334566777777554322110
Q ss_pred ------------hHHHHHhcccceeeccccccccccccccCCCcccCccCC
Q 037947 741 ------------HGIKMLLRRTEDLHLDKLNGFQNVLHELDGEGFPRLKHL 779 (780)
Q Consensus 741 ------------~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L~~L 779 (780)
+.....+++|+.|++++ +.++.++.... ..+++|++|
T Consensus 258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~-N~l~~i~~~~~-~~l~~L~~L 306 (353)
T 2z80_A 258 NVKITDESLFQVMKLLNQISGLLELEFSR-NQLKSVPDGIF-DRLTSLQKI 306 (353)
T ss_dssp SCBCCHHHHHHHHHHHHTCTTCCEEECCS-SCCCCCCTTTT-TTCTTCCEE
T ss_pred cccccCcchhhhHHHHhcccCCCEEECCC-CCCCccCHHHH-hcCCCCCEE
Confidence 11123468999999999 57777775431 457888776
No 58
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.67 E-value=5e-16 Score=181.78 Aligned_cols=261 Identities=22% Similarity=0.246 Sum_probs=179.3
Q ss_pred CceEEEccCCCCccCCCc--cCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCC-ccccCCCCCCEEEc
Q 037947 512 DPIAISLPCRDIQELPER--LECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP-STLGCLINLQTLSF 588 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L 588 (780)
..++|.+.++.+..++.. ..+++|++|++++|.+. .+|...|.++++|++|++++|.++.+| ..++.+++|++|++
T Consensus 50 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 50 QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred cCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 588999998888777543 27899999999998876 567666788999999999999988775 57889999999999
Q ss_pred cCccCCC--cccccccCCCcEEEeecCCCCccChh-h--cCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCC
Q 037947 589 ECCVLGD--VATVGALKKLVILSFRNSHIEQLPEE-I--GQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFT 663 (780)
Q Consensus 589 ~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i--~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 663 (780)
++|.+.. +..++++.+|++|++++|.+..+|.. + ..+++|++|++++ +.++..++..++.+++|+.|++.++..
T Consensus 129 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~~~l 207 (680)
T 1ziw_A 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS-NQIKEFSPGCFHAIGRLFGLFLNNVQL 207 (680)
T ss_dssp CSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT-CCCCCBCTTGGGGSSEECEEECTTCCC
T ss_pred CCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC-CcccccChhhhhhhhhhhhhhcccccc
Confidence 9998876 56688899999999999988887653 3 3568899999988 577777776666665555555443321
Q ss_pred cc-----------------------ccccCCccchhhhcCC--CCCCEEEeeccCCCCCCcc-c-cccCccEEEEEecCc
Q 037947 664 HW-----------------------EIEGQNNASLAELNQL--SRLTTLEMHILDAQVMPRE-L-FSVGLERYKIFLGDV 716 (780)
Q Consensus 664 ~~-----------------------~~~~~~~~~l~~l~~L--~~L~~L~l~~~~~~~~~~~-~-~~~~L~~L~i~~~~~ 716 (780)
.. .+.+..+ ..+..+ ++|+.|+++.|.+..++.. + .+++|++|.+..+..
T Consensus 208 ~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~---~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (680)
T 1ziw_A 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSN---TTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNI 284 (680)
T ss_dssp HHHHHHHHHHHHTTSCCCEEECTTSCCCEECT---TTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCB
T ss_pred ChhhHHHHHHHhhhccccEEEccCCcccccCh---hHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCcc
Confidence 10 0000111 233334 3499999998887776544 3 678899999876553
Q ss_pred c----cccccccccceeEeecCCCc---------cchhHHHHHhcccceeeccccccccccccccCCCcccCccCC
Q 037947 717 W----SWTGKYETSRTLKLKLDNPM---------YLEHGIKMLLRRTEDLHLDKLNGFQNVLHELDGEGFPRLKHL 779 (780)
Q Consensus 717 ~----~~~~~~~~l~~l~L~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L~~L 779 (780)
. .++..++.++.+.+..+... .........+++|+.|++++ +.+..++... -.++++|++|
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~-n~l~~~~~~~-~~~l~~L~~L 358 (680)
T 1ziw_A 285 QHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED-NDIPGIKSNM-FTGLINLKYL 358 (680)
T ss_dssp SEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS-CCBCCCCTTT-TTTCTTCCEE
T ss_pred CccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC-CccCCCChhH-hccccCCcEE
Confidence 2 34566777777777432111 00111223468899999988 4555554332 2457777765
No 59
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.67 E-value=6.1e-16 Score=176.61 Aligned_cols=143 Identities=21% Similarity=0.288 Sum_probs=92.9
Q ss_pred eEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC-CccccCCCCCCEEEccCcc
Q 037947 514 IAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGCLINLQTLSFECCV 592 (780)
Q Consensus 514 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~ 592 (780)
+++.++++.+..+|.... ++++.|++++|.+.. ++...|.++++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 34 ~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISE-LRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp CEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCC-CCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred cEEEcCCCCCccCCCCCC-CCcCEEECCCCCccc-cChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 667777777777765432 677777777777663 4434456777777777777777755 5567777777777777777
Q ss_pred CCCcccccccCCCcEEEeecCCCCccC--hhhcCCCCCCEEecCCCCCCcccCccccCCCccc--ceeeccCCCC
Q 037947 593 LGDVATVGALKKLVILSFRNSHIEQLP--EEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRL--EELYMGNSFT 663 (780)
Q Consensus 593 ~~~~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L--~~L~l~~~~~ 663 (780)
+..++.. .+.+|++|++++|.+..+| ..++.+++|++|++++ +.++... +..+++| ++|++++|..
T Consensus 112 l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~-n~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 112 LQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA-AKFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEEC-SBCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCC-CccccCc---hhhhhhceeeEEEeecccc
Confidence 7663333 6777777777777776653 5677777777777776 4444332 2333333 6666665543
No 60
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.66 E-value=1.5e-15 Score=167.86 Aligned_cols=202 Identities=16% Similarity=0.137 Sum_probs=150.8
Q ss_pred CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCCcccccccCCCcEEEe
Q 037947 531 ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGDVATVGALKKLVILSF 610 (780)
Q Consensus 531 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l 610 (780)
.+++|+.|++++|.+.+ +| . +..++.|++|++++|.++.+| ++.+++|++|++++|.+..++ ++++++|++|++
T Consensus 40 ~l~~L~~L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L 113 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNC 113 (457)
T ss_dssp HHTTCCEEECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEEC
T ss_pred HcCCCCEEEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEEC
Confidence 68899999999998875 46 3 578999999999999999886 899999999999999998864 899999999999
Q ss_pred ecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEee
Q 037947 611 RNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMH 690 (780)
Q Consensus 611 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~ 690 (780)
++|.+..+| ++.+++|++|++++ +.++.++ ++.+++|++|++++|.....+ .+..+++|+.|+++
T Consensus 114 ~~N~l~~l~--~~~l~~L~~L~l~~-N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---------~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 114 DTNKLTKLD--VSQNPLLTYLNCAR-NTLTEID---VSHNTQLTELDCHLNKKITKL---------DVTPQTQLTTLDCS 178 (457)
T ss_dssp CSSCCSCCC--CTTCTTCCEEECTT-SCCSCCC---CTTCTTCCEEECTTCSCCCCC---------CCTTCTTCCEEECC
T ss_pred CCCcCCeec--CCCCCcCCEEECCC-Cccceec---cccCCcCCEEECCCCCccccc---------ccccCCcCCEEECC
Confidence 999999987 89999999999999 6787773 789999999999998432111 35566777777777
Q ss_pred ccCCCCCCccccccCccEEEEEecCcccc-cccccccceeEeecCCCccchhHHHHHhcccceeeccc
Q 037947 691 ILDAQVMPRELFSVGLERYKIFLGDVWSW-TGKYETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDK 757 (780)
Q Consensus 691 ~~~~~~~~~~~~~~~L~~L~i~~~~~~~~-~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 757 (780)
.|.+..+| ...+++|+.|.+..+..... +..++.++.+.++.+.....+ ...+++|+.|++++
T Consensus 179 ~n~l~~l~-l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~ 242 (457)
T 3bz5_A 179 FNKITELD-VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSV 242 (457)
T ss_dssp SSCCCCCC-CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCS
T ss_pred CCccceec-cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeC
Confidence 77777665 22566677776655443221 334455555555444332222 12345555555555
No 61
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.65 E-value=5.3e-15 Score=151.79 Aligned_cols=177 Identities=25% Similarity=0.386 Sum_probs=151.6
Q ss_pred CCceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCc-cccCCCCCCEEE
Q 037947 511 KDPIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGCLINLQTLS 587 (780)
Q Consensus 511 ~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~ 587 (780)
..+++|.+.++.+..++. ...+++|+.|++++|.+. .+|..+|..++.|++|++++|.++.+|. .+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 358999999999998875 348999999999999887 6777778899999999999999998865 568899999999
Q ss_pred ccCccCCC--cccccccCCCcEEEeecCCCCccChh-hcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCc
Q 037947 588 FECCVLGD--VATVGALKKLVILSFRNSHIEQLPEE-IGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTH 664 (780)
Q Consensus 588 L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 664 (780)
+++|.+.. +..++.+.+|++|++++|.+..+|.. +..+++|++|++++ +.++.+++..+..+++|++|++++|.+.
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 99999988 34578999999999999999999875 78999999999998 6888898877899999999999998653
Q ss_pred cccccCCccchhhhcCCCCCCEEEeeccCCCC
Q 037947 665 WEIEGQNNASLAELNQLSRLTTLEMHILDAQV 696 (780)
Q Consensus 665 ~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~ 696 (780)
.... ..+..+++|+.|+++.|...-
T Consensus 195 ~~~~-------~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 195 RVPE-------GAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CCCT-------TTTTTCTTCCEEECCSSCBCC
T ss_pred cCCH-------HHhccccCCCEEEecCCCeeC
Confidence 2111 346778899999999887543
No 62
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.65 E-value=2.2e-15 Score=156.04 Aligned_cols=192 Identities=18% Similarity=0.149 Sum_probs=161.7
Q ss_pred CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC-CccccCCCCCCEEEccCccCCCcccccccCCCcEEE
Q 037947 531 ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGCLINLQTLSFECCVLGDVATVGALKKLVILS 609 (780)
Q Consensus 531 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~ 609 (780)
.+++++.++++++.+. .+|..+ .+.+++|++++|.++.+ |..+..+++|++|++++|.++.++..+.+.+|++|+
T Consensus 8 ~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 83 (290)
T 1p9a_G 8 KVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD 83 (290)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred ccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence 5778999999998876 677655 36899999999999976 568999999999999999998866668999999999
Q ss_pred eecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEe
Q 037947 610 FRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEM 689 (780)
Q Consensus 610 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l 689 (780)
+++|.+..+|..+..+++|++|++++ +.++.+++..+..+++|++|++++|.+..... ..+..+++|+.|++
T Consensus 84 Ls~N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L 155 (290)
T 1p9a_G 84 LSHNQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGNELKTLPP-------GLLTPTPKLEKLSL 155 (290)
T ss_dssp CCSSCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT-------TTTTTCTTCCEEEC
T ss_pred CCCCcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCCCCCccCh-------hhcccccCCCEEEC
Confidence 99999999999999999999999999 78999988889999999999999996532211 34678899999999
Q ss_pred eccCCCCCCccc--cccCccEEEEEecCcc---cccccccccceeEeecC
Q 037947 690 HILDAQVMPREL--FSVGLERYKIFLGDVW---SWTGKYETSRTLKLKLD 734 (780)
Q Consensus 690 ~~~~~~~~~~~~--~~~~L~~L~i~~~~~~---~~~~~~~~l~~l~L~~~ 734 (780)
+.|.+..+|... .+++|+.|.+..+... ........++.+.|..+
T Consensus 156 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 156 ANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205 (290)
T ss_dssp TTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSC
T ss_pred CCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCC
Confidence 999999999876 6899999999876543 33444556777777654
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=8.3e-17 Score=169.47 Aligned_cols=235 Identities=15% Similarity=0.138 Sum_probs=179.9
Q ss_pred CceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEcc
Q 037947 512 DPIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFE 589 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 589 (780)
.+++|.+++|.+..++. ...+++|+.|++++|.+.+..+ +..++.|++|++++|.++.+| ..++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL----VGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECCSSEEEEEE----ECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECcCCcccccc----CCCCcCEEECC
Confidence 48899999999888763 3488999999999999875443 678999999999999987665 34899999999
Q ss_pred CccCCCcccccccCCCcEEEeecCCCCccCh-hhcCCCCCCEEecCCCCCCcccCcccc-CCCcccceeeccCCCCcccc
Q 037947 590 CCVLGDVATVGALKKLVILSFRNSHIEQLPE-EIGQLTRLKLLDLSNCSKLKSIRPNVI-SNLPRLEELYMGNSFTHWEI 667 (780)
Q Consensus 590 ~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~ 667 (780)
+|.+...+. ..+++|++|++++|.+..++. .++.+++|++|++++ +.+..+++..+ ..+++|++|++++|.+...
T Consensus 108 ~n~l~~~~~-~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~- 184 (317)
T 3o53_A 108 NNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (317)
T ss_dssp SSCCSEEEE-CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CCccCCcCc-cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC-CCCCcccHHHHhhccCcCCEEECCCCcCccc-
Confidence 999877332 247889999999999998855 788899999999998 67777665555 4789999999999864321
Q ss_pred ccCCccchhhhcCCCCCCEEEeeccCCCCCCccc-cccCccEEEEEecCcc---cccccccccceeEeecCCCc-cchhH
Q 037947 668 EGQNNASLAELNQLSRLTTLEMHILDAQVMPREL-FSVGLERYKIFLGDVW---SWTGKYETSRTLKLKLDNPM-YLEHG 742 (780)
Q Consensus 668 ~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~i~~~~~~---~~~~~~~~l~~l~L~~~~~~-~~~~~ 742 (780)
.....+++|+.|+++.|.+..+|..+ .+++|+.|++..+... ..+..++.++.+.+..+... .....
T Consensus 185 --------~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~ 256 (317)
T 3o53_A 185 --------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (317)
T ss_dssp --------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHH
T ss_pred --------ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHH
Confidence 22335889999999999999888777 7899999999876543 34556677788887665533 22333
Q ss_pred HHHHhcccceeecccccccccc
Q 037947 743 IKMLLRRTEDLHLDKLNGFQNV 764 (780)
Q Consensus 743 ~~~~l~~L~~L~l~~~~~l~~~ 764 (780)
....+++|+.|++.+++.++..
T Consensus 257 ~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 257 FFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp HHHTCHHHHHHHHHHHHHHHSS
T ss_pred HHhccccceEEECCCchhccCC
Confidence 3444688888888876655543
No 64
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=1.9e-15 Score=158.12 Aligned_cols=196 Identities=18% Similarity=0.232 Sum_probs=161.1
Q ss_pred CccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCCccccccc
Q 037947 523 IQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGDVATVGAL 602 (780)
Q Consensus 523 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l 602 (780)
+........+++|+.|+++++.+. .+|. +..+++|++|++++|.++.+|. +..+++|++|++++|.+..++.++.+
T Consensus 31 ~~~~~~~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l 106 (308)
T 1h6u_A 31 VTDTVTQADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGL 106 (308)
T ss_dssp TTSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTC
T ss_pred cCceecHHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCC
Confidence 333333346889999999999876 3553 5789999999999999998887 99999999999999999998899999
Q ss_pred CCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCC
Q 037947 603 KKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLS 682 (780)
Q Consensus 603 ~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~ 682 (780)
.+|++|++++|.+..+|. +..+++|++|++++ +.++.+++ ++.+++|++|++++|.+.. +..+..++
T Consensus 107 ~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~--l~~l~~L~~L~l~~n~l~~---------~~~l~~l~ 173 (308)
T 1h6u_A 107 QSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL-NQITNISP--LAGLTNLQYLSIGNAQVSD---------LTPLANLS 173 (308)
T ss_dssp TTCCEEECTTSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG--GGGCTTCCEEECCSSCCCC---------CGGGTTCT
T ss_pred CCCCEEECCCCCCCCchh-hcCCCCCCEEECCC-CccCcCcc--ccCCCCccEEEccCCcCCC---------ChhhcCCC
Confidence 999999999999999886 99999999999999 67888865 7899999999999985421 22378899
Q ss_pred CCCEEEeeccCCCCCCccccccCccEEEEEecCcccc--cccccccceeEeecCC
Q 037947 683 RLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVWSW--TGKYETSRTLKLKLDN 735 (780)
Q Consensus 683 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~--~~~~~~l~~l~L~~~~ 735 (780)
+|+.|+++.|.+..++....+++|++|++..+....+ +..++.++.+.+..+.
T Consensus 174 ~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 174 KLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEE
T ss_pred CCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCe
Confidence 9999999999998888755888999999977654332 4556667777775543
No 65
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.64 E-value=8.2e-15 Score=175.22 Aligned_cols=58 Identities=21% Similarity=0.326 Sum_probs=28.2
Q ss_pred CCcEEEeecCCCCcc-ChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCC
Q 037947 604 KLVILSFRNSHIEQL-PEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSF 662 (780)
Q Consensus 604 ~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 662 (780)
+|+.|++++|.+..+ |..+..+++|+.|++++ +.++.+++..++.+++|++|++++|.
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY-NKINKIADEAFYGLDNLQVLNLSYNL 325 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEES-CCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCC-CcCCCCChHHhcCCCCCCEEECCCCC
Confidence 344444444444433 23344555555555555 34444444445555555555555553
No 66
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=174.46 Aligned_cols=176 Identities=22% Similarity=0.287 Sum_probs=133.2
Q ss_pred EEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC-CccccCCCCCCEEEccCccC
Q 037947 515 AISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGCLINLQTLSFECCVL 593 (780)
Q Consensus 515 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~ 593 (780)
.+...+..+..+|... .++++.|++++|.+.. ++...|.+++.|++|++++|.++.+ |..+..+++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 11 TYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EEECCSSCCSSCCSSS-CSSCCEEECCSCCCCE-ECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEEeCCCCccccCCCc-cccccEEEccCCccCc-cChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 3444555677777633 3579999999999874 4444568899999999999999977 46789999999999999998
Q ss_pred CC--cccccccCCCcEEEeecCCCCccCh-hhcCCCCCCEEecCCCCCCcccC-ccccCCCcccceeeccCCCCcccccc
Q 037947 594 GD--VATVGALKKLVILSFRNSHIEQLPE-EIGQLTRLKLLDLSNCSKLKSIR-PNVISNLPRLEELYMGNSFTHWEIEG 669 (780)
Q Consensus 594 ~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~ 669 (780)
.. +..++.+.+|++|++++|.+..+|. .++.+++|++|++++ +.+..+. |..++++++|++|++++|......
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~-- 165 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY-- 165 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC--
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCC-CccceecChhhhcccCCCCEEeCcCCccceec--
Confidence 87 4679999999999999999999886 699999999999999 5666532 566899999999999998653221
Q ss_pred CCccchhhhcCCCCC-CEEEeeccCCCCC
Q 037947 670 QNNASLAELNQLSRL-TTLEMHILDAQVM 697 (780)
Q Consensus 670 ~~~~~l~~l~~L~~L-~~L~l~~~~~~~~ 697 (780)
...+..+.+++.+ ..|+++.|.+..+
T Consensus 166 --~~~~~~l~~L~~~~~~L~l~~n~l~~~ 192 (570)
T 2z63_A 166 --CTDLRVLHQMPLLNLSLDLSLNPMNFI 192 (570)
T ss_dssp --GGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred --HHHccchhccchhhhhcccCCCCceec
Confidence 1223333333221 4555555554443
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=4.8e-15 Score=152.70 Aligned_cols=195 Identities=21% Similarity=0.253 Sum_probs=101.1
Q ss_pred CCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCC-ccccCCCCCCEEEccCccCCC--cccccccCCCcEEE
Q 037947 533 PKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP-STLGCLINLQTLSFECCVLGD--VATVGALKKLVILS 609 (780)
Q Consensus 533 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~ 609 (780)
++++.|++++|.+.. ++...+.+++.|++|++++|.++.++ ..+..+++|++|++++|.+.. +..+.++.+|++|+
T Consensus 28 ~~l~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCE-ECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccc-cCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 346666666665542 33333455666666666666665443 245566666666666666554 23455666666666
Q ss_pred eecCCCCccCh-hhcCCCCCCEEecCCCCCCcccC-ccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCC-E
Q 037947 610 FRNSHIEQLPE-EIGQLTRLKLLDLSNCSKLKSIR-PNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLT-T 686 (780)
Q Consensus 610 l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~-~ 686 (780)
+++|.+..++. .++.+++|++|++++ +.++.+. |..++.+++|++|++++|.+.. -....+..+.+++.|. .
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQS----IYCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSSCCCE----ECGGGGHHHHTCTTCCEE
T ss_pred CCCCCccccCchhcccCCCCCEEECcC-CccceecCchhhccCCCCCEEECCCCCCCc----CCHHHhhhhhhcccccee
Confidence 66666555544 455666666666665 4444422 3445566666666666653321 1112333444444444 5
Q ss_pred EEeeccCCCCCCccc-cccCccEEEEEecCccc----ccccccccceeEeec
Q 037947 687 LEMHILDAQVMPREL-FSVGLERYKIFLGDVWS----WTGKYETSRTLKLKL 733 (780)
Q Consensus 687 L~l~~~~~~~~~~~~-~~~~L~~L~i~~~~~~~----~~~~~~~l~~l~L~~ 733 (780)
|+++.|.+..++... ...+|+.|++..+.... .+..++.++.+.|..
T Consensus 182 L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp EECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCS
T ss_pred eecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccC
Confidence 666666655554443 33355555555443221 123344445555533
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=4.4e-16 Score=173.69 Aligned_cols=227 Identities=16% Similarity=0.127 Sum_probs=173.6
Q ss_pred CceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEcc
Q 037947 512 DPIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFE 589 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 589 (780)
.++.|.+++|.+..++. ...+++|++|++++|.+.+..| +..+++|++|+|++|.++.+|. .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence 48999999999988763 3488999999999999876554 6789999999999999887664 3899999999
Q ss_pred CccCCCcccccccCCCcEEEeecCCCCcc-ChhhcCCCCCCEEecCCCCCCcccCccccC-CCcccceeeccCCCCcccc
Q 037947 590 CCVLGDVATVGALKKLVILSFRNSHIEQL-PEEIGQLTRLKLLDLSNCSKLKSIRPNVIS-NLPRLEELYMGNSFTHWEI 667 (780)
Q Consensus 590 ~~~~~~~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~ 667 (780)
+|.+..++. ..+++|++|++++|.+..+ |..++.+++|++|++++ +.++..+|..+. .+++|++|++++|.+...
T Consensus 108 ~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 108 NNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp SSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC-CCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 999888332 3568899999999999887 55788999999999998 677776666565 789999999999865322
Q ss_pred ccCCccchhhhcCCCCCCEEEeeccCCCCCCccc-cccCccEEEEEecCc---ccccccccccceeEeecCCCc-cchhH
Q 037947 668 EGQNNASLAELNQLSRLTTLEMHILDAQVMPREL-FSVGLERYKIFLGDV---WSWTGKYETSRTLKLKLDNPM-YLEHG 742 (780)
Q Consensus 668 ~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~i~~~~~---~~~~~~~~~l~~l~L~~~~~~-~~~~~ 742 (780)
.....+++|+.|+++.|.+..+|+.+ .+++|+.|++..+.. +.++..++.++.+.+..+... ...+.
T Consensus 185 --------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 185 --------KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp --------ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred --------cccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 23345889999999999998888877 788999999987654 344556677777777655432 11222
Q ss_pred HHHHhcccceeecc
Q 037947 743 IKMLLRRTEDLHLD 756 (780)
Q Consensus 743 ~~~~l~~L~~L~l~ 756 (780)
....+++|+.|.+.
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 23335677777765
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.64 E-value=1.9e-15 Score=155.66 Aligned_cols=195 Identities=23% Similarity=0.271 Sum_probs=161.6
Q ss_pred CCceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCC-ccccCCCCCCEEE
Q 037947 511 KDPIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP-STLGCLINLQTLS 587 (780)
Q Consensus 511 ~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~ 587 (780)
..+++|.+.++.+..++. ...+++|+.|++++|.+. .++...+.++++|++|++++|.++.++ ..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 358999999999988874 348999999999999887 455555788999999999999999765 6789999999999
Q ss_pred ccCccCCCc--ccccccCCCcEEEeecCCCCc--cChhhcCCCCCCEEecCCCCCCcccCccccCCCcccc----eeecc
Q 037947 588 FECCVLGDV--ATVGALKKLVILSFRNSHIEQ--LPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLE----ELYMG 659 (780)
Q Consensus 588 L~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~----~L~l~ 659 (780)
+++|.+... ..++.+++|++|++++|.+.. +|..+..+++|++|++++ +.++.+++..+..+++|+ .|+++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~l~l~L~ls 185 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHTCTTCCEEEECC
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-CCCCcCCHHHhhhhhhccccceeeecC
Confidence 999998873 368999999999999999987 789999999999999999 688888777777777777 88998
Q ss_pred CCCCccccccCCccchhhhcCCCCCCEEEeeccCCCCCCccc--cccCccEEEEEecC
Q 037947 660 NSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPREL--FSVGLERYKIFLGD 715 (780)
Q Consensus 660 ~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~i~~~~ 715 (780)
+|.+..... ......+|+.|+++.|.+..+|... .+++|+.|.+..+.
T Consensus 186 ~n~l~~~~~--------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 186 LNPMNFIQP--------GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp SSCCCEECT--------TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred CCcccccCc--------cccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCc
Confidence 886532211 2223347999999999999988875 68899999996543
No 70
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=1.4e-15 Score=153.01 Aligned_cols=191 Identities=12% Similarity=0.140 Sum_probs=120.5
Q ss_pred CceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecC-CCCCCCC-ccccCCCCCCEEE
Q 037947 512 DPIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNG-FHFPSLP-STLGCLINLQTLS 587 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp-~~i~~l~~L~~L~ 587 (780)
.++.|.+.++.+..++. +..+++|+.|++++|.....++...|.++++|++|++++ |.++.+| ..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 46677777777766654 236677777777777522245555556677777777776 6676654 3566677777777
Q ss_pred ccCccCCCcccccccCCCc---EEEeecC-CCCccChh-hcCCCCCC-EEecCCCCCCcccCccccCCCcccceeeccCC
Q 037947 588 FECCVLGDVATVGALKKLV---ILSFRNS-HIEQLPEE-IGQLTRLK-LLDLSNCSKLKSIRPNVISNLPRLEELYMGNS 661 (780)
Q Consensus 588 L~~~~~~~~~~i~~l~~L~---~L~l~~~-~l~~lp~~-i~~l~~L~-~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 661 (780)
+++|.+..++.++.+.+|+ +|++++| .+..+|.. +..+++|+ +|++++ +.++.+|+..+.. ++|++|++++|
T Consensus 112 l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp EEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTT-CEEEEEECTTC
T ss_pred CCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCC-CCCCEEEcCCC
Confidence 7777766644466666666 7777777 67766653 66677777 777776 5566665543333 67777777766
Q ss_pred C-CccccccCCccchhhhcCC-CCCCEEEeeccCCCCCCccccccCccEEEEE
Q 037947 662 F-THWEIEGQNNASLAELNQL-SRLTTLEMHILDAQVMPRELFSVGLERYKIF 712 (780)
Q Consensus 662 ~-~~~~~~~~~~~~l~~l~~L-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~ 712 (780)
. .....+ ..+..+ ++|+.|+++.|.+..+|.. .+++|+.|.+.
T Consensus 190 ~~l~~i~~-------~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~ 234 (239)
T 2xwt_C 190 KYLTVIDK-------DAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIAR 234 (239)
T ss_dssp TTCCEECT-------TTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECT
T ss_pred CCcccCCH-------HHhhccccCCcEEECCCCccccCChh-HhccCceeecc
Confidence 2 321111 234555 6677777777777666665 56666666653
No 71
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=7e-15 Score=149.11 Aligned_cols=175 Identities=21% Similarity=0.302 Sum_probs=141.4
Q ss_pred ceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCC-ccccCCCCCCEEEccCc
Q 037947 513 PIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP-STLGCLINLQTLSFECC 591 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~ 591 (780)
.+++.+.++.+..+|.... ++++.|++++|.+... +...+.++++|++|++++|.++.++ ..+..+++|++|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC-CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4678888888888886544 6899999999998754 4445678999999999999998764 45788999999999999
Q ss_pred cCCC--cccccccCCCcEEEeecCCCCccChh-hcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccc
Q 037947 592 VLGD--VATVGALKKLVILSFRNSHIEQLPEE-IGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIE 668 (780)
Q Consensus 592 ~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 668 (780)
.+.. +..+..+.+|++|++++|.+..+|.. +..+++|++|++++ +.++.+++..++.+++|++|++++|.+....+
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 9887 34678899999999999999988876 57899999999998 68888888778899999999999886532211
Q ss_pred cCCccchhhhcCCCCCCEEEeeccCCCCC
Q 037947 669 GQNNASLAELNQLSRLTTLEMHILDAQVM 697 (780)
Q Consensus 669 ~~~~~~l~~l~~L~~L~~L~l~~~~~~~~ 697 (780)
..+..+++|+.|+++.|.+...
T Consensus 173 -------~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 173 -------GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp -------TTTTTCTTCCEEECCSCCBCTT
T ss_pred -------HHHhCCCCCCEEEeeCCceeCC
Confidence 3567788899999988876544
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=3e-15 Score=153.83 Aligned_cols=172 Identities=24% Similarity=0.295 Sum_probs=111.2
Q ss_pred CceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCc-cccCCCCCCEEEccC
Q 037947 512 DPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGCLINLQTLSFEC 590 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~ 590 (780)
.++.|.+.++.+..++....+++|+.|++++|.+.. ++ .+..+++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 42 ~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~-~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 42 SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHD-IS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCC-CG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred ceeeeeeCCCCcccccccccCCCCcEEECCCCCCCC-ch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 366777777777766665667777777777776653 22 24567777777777777776544 356677777777777
Q ss_pred ccCCC-c-ccccccCCCcEEEeecCCCCccChh-hcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCcccc
Q 037947 591 CVLGD-V-ATVGALKKLVILSFRNSHIEQLPEE-IGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEI 667 (780)
Q Consensus 591 ~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 667 (780)
|.+.. + ..++.+.+|++|++++|.+..+|.. ++.+++|++|++++ +.++.+++..++.+++|++|++++|.+....
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCC-CCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 77666 2 2366777777777777777766654 46677777777776 4566666665666777777777766432211
Q ss_pred ccCCccchhhhcCCCCCCEEEeeccCC
Q 037947 668 EGQNNASLAELNQLSRLTTLEMHILDA 694 (780)
Q Consensus 668 ~~~~~~~l~~l~~L~~L~~L~l~~~~~ 694 (780)
+ ..+..+++|+.|+++.|..
T Consensus 198 ~-------~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 198 D-------GVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp T-------TTTTTCTTCCEEECCSSCB
T ss_pred H-------HHHhCCcCCCEEEccCCCc
Confidence 1 2345666677777766643
No 73
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=2.9e-16 Score=165.27 Aligned_cols=213 Identities=15% Similarity=0.086 Sum_probs=143.2
Q ss_pred CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCCcccccccCCCcEEEe
Q 037947 531 ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGDVATVGALKKLVILSF 610 (780)
Q Consensus 531 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l 610 (780)
.+++|+.|++++|.+.. ++...+..++.|++|++++|.++..++ +..+++|++|++++|.+..+ ....+|++|++
T Consensus 32 ~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l---~~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSCCCC-CCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE---EECTTCCEEEC
T ss_pred cCCCCCEEECcCCccCc-CCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc---cCCCCcCEEEC
Confidence 45678888888887764 444445778888888888887775554 77788888888888776542 23477888888
Q ss_pred ecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhh-cCCCCCCEEEe
Q 037947 611 RNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAEL-NQLSRLTTLEM 689 (780)
Q Consensus 611 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l-~~L~~L~~L~l 689 (780)
++|.+..+|.. .+++|++|++++ +.++.+++..++.+++|++|++++|.+.... ...+ ..+++|+.|++
T Consensus 107 ~~n~l~~~~~~--~~~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-------~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 107 ANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTVN-------FAELAASSDTLEHLNL 176 (317)
T ss_dssp CSSCCSEEEEC--CCSSCEEEECCS-SCCCSGGGBCTGGGSSEEEEECTTSCCCEEE-------GGGGGGGTTTCCEEEC
T ss_pred CCCccCCcCcc--ccCCCCEEECCC-CCCCCccchhhhccCCCCEEECCCCCCCccc-------HHHHhhccCcCCEEEC
Confidence 88877777643 367788888887 5677776666777788888888877543211 1233 35677888888
Q ss_pred eccCCCCCCccccccCccEEEEEecCcc---cccccccccceeEeecCCCccchhHHHHHhcccceeeccccc
Q 037947 690 HILDAQVMPRELFSVGLERYKIFLGDVW---SWTGKYETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDKLN 759 (780)
Q Consensus 690 ~~~~~~~~~~~~~~~~L~~L~i~~~~~~---~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 759 (780)
+.|.+..++....+++|+.|++..+... ..+..++.++.+.|+.+.....+..+ ..+++|+.|++++++
T Consensus 177 ~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~-~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 177 QYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNG 248 (317)
T ss_dssp TTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTC-CCCTTCCEEECTTCC
T ss_pred CCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHh-hcCCCCCEEEccCCC
Confidence 8887777766656777888888765532 22445566777777665544334332 235778888887743
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.63 E-value=1.1e-14 Score=149.69 Aligned_cols=197 Identities=19% Similarity=0.279 Sum_probs=155.7
Q ss_pred CCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCCc--c
Q 037947 520 CRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGDV--A 597 (780)
Q Consensus 520 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~--~ 597 (780)
.+.+........+++|+.|.++++.+. .++. +..++.|++|++++|.++.++ .+..+++|++|++++|.+..+ .
T Consensus 28 ~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~ 103 (272)
T 3rfs_A 28 KKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNG 103 (272)
T ss_dssp CSCTTSEECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTT
T ss_pred CcccccccccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChh
Confidence 333434434447889999999998876 3443 567999999999999998864 788999999999999999883 3
Q ss_pred cccccCCCcEEEeecCCCCccChh-hcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchh
Q 037947 598 TVGALKKLVILSFRNSHIEQLPEE-IGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLA 676 (780)
Q Consensus 598 ~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~ 676 (780)
.++++.+|++|++++|.+..+|.. ++.+++|++|++++ +.++.+++..++.+++|++|++++|.+....+ .
T Consensus 104 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------~ 175 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE-------G 175 (272)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------T
T ss_pred HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCC-CccCccCHHHhccCccCCEEECCCCCcCccCH-------H
Confidence 478999999999999999988765 68999999999999 58888888778899999999999986532111 3
Q ss_pred hhcCCCCCCEEEeeccCCCCCCccc--cccCccEEEEEecCcccccccccccceeEe
Q 037947 677 ELNQLSRLTTLEMHILDAQVMPREL--FSVGLERYKIFLGDVWSWTGKYETSRTLKL 731 (780)
Q Consensus 677 ~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~i~~~~~~~~~~~~~~l~~l~L 731 (780)
.+..+++|+.|+++.|.+..++... .+++|+.|.+..+. |...++.++.+.+
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~---~~~~~~~l~~l~~ 229 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP---WDCTCPGIRYLSE 229 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC---BCCCTTTTHHHHH
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCC---ccccCcHHHHHHH
Confidence 4678899999999999988888764 78899999996553 3445555555544
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.63 E-value=4e-16 Score=174.09 Aligned_cols=214 Identities=15% Similarity=0.066 Sum_probs=161.3
Q ss_pred CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCCcccccccCCCcEEEe
Q 037947 531 ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGDVATVGALKKLVILSF 610 (780)
Q Consensus 531 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l 610 (780)
.+++|+.|++++|.+.. +++..|..+++|++|+|++|.++..++ ++.+++|++|+|++|.+..++ ..++|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEEC
Confidence 45589999999998875 444456889999999999999886654 888999999999998876532 3488999999
Q ss_pred ecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhc-CCCCCCEEEe
Q 037947 611 RNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELN-QLSRLTTLEM 689 (780)
Q Consensus 611 ~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~-~L~~L~~L~l 689 (780)
++|.+..+|.. .+++|++|++++ +.++.++|..++.+++|++|++++|.+....+ ..+. .+++|+.|++
T Consensus 107 ~~N~l~~~~~~--~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 107 ANNNISRVSCS--RGQGKKNIYLAN-NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF-------AELAASSDTLEHLNL 176 (487)
T ss_dssp CSSCCCCEEEC--CCSSCEEEECCS-SCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG-------GGGGGGTTTCCEEEC
T ss_pred cCCcCCCCCcc--ccCCCCEEECCC-CCCCCCCchhhcCCCCCCEEECCCCCCCCcCh-------HHHhhhCCcccEEec
Confidence 99988888763 578899999988 67777777778889999999999886543222 3443 6788999999
Q ss_pred eccCCCCCCccccccCccEEEEEecCcc---cccccccccceeEeecCCCccchhHHHHHhcccceeecccccc
Q 037947 690 HILDAQVMPRELFSVGLERYKIFLGDVW---SWTGKYETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDKLNG 760 (780)
Q Consensus 690 ~~~~~~~~~~~~~~~~L~~L~i~~~~~~---~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 760 (780)
+.|.+..+|....+++|+.|++..+... ..+..++.++.+.|+.+.....+.. ...+++|+.|++++++-
T Consensus 177 s~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 177 QYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp TTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCB
T ss_pred CCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCC
Confidence 9998888877767888999999876543 2345567778888776654444444 23358899999988544
No 76
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.63 E-value=6.3e-15 Score=152.82 Aligned_cols=172 Identities=26% Similarity=0.342 Sum_probs=145.9
Q ss_pred CceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCc
Q 037947 512 DPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECC 591 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 591 (780)
.++.|.+.++.+..++....+++|+.|++++|.+.. ++. +..+++|++|++++|.++.+|. +..+++|++|++++|
T Consensus 47 ~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN 122 (291)
T ss_dssp TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS
T ss_pred cccEEEccCCCcccChhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC
Confidence 478899999999888877789999999999998875 343 6789999999999999988764 889999999999999
Q ss_pred cCCCcccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCC
Q 037947 592 VLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQN 671 (780)
Q Consensus 592 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 671 (780)
.+..++.++.+++|++|++++|.+..+ ..+..+++|++|++++ +.++.+++ +..+++|++|++++|.+..
T Consensus 123 ~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~--l~~l~~L~~L~L~~N~i~~------ 192 (291)
T 1h6t_A 123 GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHISD------ 192 (291)
T ss_dssp CCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCB------
T ss_pred cCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccC-Cccccchh--hcCCCccCEEECCCCcCCC------
Confidence 999888899999999999999999888 5688999999999998 67888765 7899999999999885421
Q ss_pred ccchhhhcCCCCCCEEEeeccCCCCCCcc
Q 037947 672 NASLAELNQLSRLTTLEMHILDAQVMPRE 700 (780)
Q Consensus 672 ~~~l~~l~~L~~L~~L~l~~~~~~~~~~~ 700 (780)
+..+..+++|+.|+++.|.+...|..
T Consensus 193 ---l~~l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 193 ---LRALAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp ---CGGGTTCTTCSEEEEEEEEEECCCEE
T ss_pred ---ChhhccCCCCCEEECcCCcccCCccc
Confidence 24578889999999998887665443
No 77
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.62 E-value=5e-14 Score=154.17 Aligned_cols=308 Identities=15% Similarity=0.066 Sum_probs=185.3
Q ss_pred ccccCCchHHHHHHHHHH-c----c--CCccEEEE--EcCCCChHHHHHHHHHHHHhcc---CCCC-eEEEEEEccCCCH
Q 037947 150 YEQFESRMPTFQDIMEAL-K----D--DNINVIGI--YGIGGVGKTTLVKQVARRVMED---KLFD-EVVMVVVSQKPDY 216 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L-~----~--~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~ 216 (780)
+..|+||+.+++++.+++ . . .....+.| +|++|+||||||+.+++..... ..|+ .++|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 357999999999999988 4 2 34567777 9999999999999999876542 1233 3678887777889
Q ss_pred HHHHHHHHHHcCCCcCC-CCCHHHHHHHHHHHhc--cCcEEEEEeCCCCccc-----cccc---cCCcccccccccCCC-
Q 037947 217 KAIQNEIAGALGLFLGE-HEDVSERAHLLRQRLK--ASRVLVILDDVWNRLD-----LDAV---GIPYKNYQNEIKDDR- 284 (780)
Q Consensus 217 ~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~-----~~~l---~~~~~~~~~~l~~~~- 284 (780)
..++..++.+++..... ..+..+....+.+.+. +++++|||||++.... .+.+ ...+ ..+...+
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~----~~~~~~~~ 176 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVH----EEIPSRDG 176 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHH----HHSCCTTS
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHH----HhcccCCC
Confidence 99999999999765432 2234566677777775 6799999999977532 1111 1111 0001012
Q ss_pred -CCcEEEEEecchhHHhh-------hc-CCcceEEcCCCChHHHHHHHHHhhCCC-CCCCChhHHHHHHHHHhC------
Q 037947 285 -RRCAMLLTSRRKDLLYN-------EM-NSQKNFLINVLSDQEAVQLFEKMSGVF-EGPLDFQNLAIKIARECG------ 348 (780)
Q Consensus 285 -~~s~iivTtr~~~v~~~-------~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~i~~~c~------ 348 (780)
.+..||+||+...+... .. .....++++|++.++++++|...+... ....--.+..+.|++.|+
T Consensus 177 ~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 177 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGD 256 (412)
T ss_dssp CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSC
T ss_pred CceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCC
Confidence 44568888876543210 00 112239999999999999997664311 111223467889999999
Q ss_pred CChHHHHHHHHHH---h---CC---ChhHHHHHHHHHhcCCCCCCCCchhhhhccccccccccCchhHHHHHHhhcccC-
Q 037947 349 GLPVAITTVATAL---R---NK---SLFVWKDALLQLRSSNHRDISGLDSTVYSSVKLSYNFLKSLEAQSLFLLCSLLN- 418 (780)
Q Consensus 349 GlPLai~~~~~~L---~---~~---~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp- 418 (780)
|.|..+..+.... . +. +.+.+..+...... ...+.-++..||++ .+.++..++.+.
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~ 322 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEATL 322 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHh
Confidence 9997665554332 1 11 23334433332110 23345567889986 888888888654
Q ss_pred -CCCCcChhHHHHHHh--c-cCcCCCcccHHHHHHHHHHHHHHHHhhcccccC----CCCCceeechhh
Q 037947 419 -DGSRIPIDDLLRCAM--G-LDLFSDVFSLEEARSRMHHLIDDLQASCLLLDG----DNKDDVKMHDVI 479 (780)
Q Consensus 419 -~~~~i~~~~Li~~W~--a-eg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~----~~~~~~~mHdlv 479 (780)
.+..+....+...+. + .-+-...-+ ...+.++++.|...+++... +..+.|++|++.
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 323 GGMEWINAGLLRQRYEDASLTMYNVKPRG----YTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp TTCSSBCHHHHHHHHHHHHHHHSCCCCCC----HHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred cCCCCccHHHHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 234566655544332 1 111000001 12344578888999998643 234567777665
No 78
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.62 E-value=1.9e-14 Score=158.84 Aligned_cols=233 Identities=17% Similarity=0.197 Sum_probs=121.8
Q ss_pred CceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCc
Q 037947 512 DPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECC 591 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 591 (780)
..+.|.+.+|.+..++... ++|++|++++|.+.+ +|. +.+++.|++|++++|.++.+|..+ .+|++|++++|
T Consensus 112 ~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~-lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n 183 (454)
T 1jl5_A 112 SLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEK-LPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN 183 (454)
T ss_dssp TCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSS-CCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS
T ss_pred CCcEEECCCCccCcccCCC--CCCCEEECcCCCCCC-Ccc--cCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC
Confidence 3555666655555544321 466666666666553 552 456666666666666666655432 36666666666
Q ss_pred cCCCcccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCC
Q 037947 592 VLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQN 671 (780)
Q Consensus 592 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 671 (780)
.+..++.++++.+|++|++++|.+..+|... .+|++|++++ +.++.+| . ++.+++|++|++++|.+.. ++
T Consensus 184 ~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~-n~l~~lp-~-~~~l~~L~~L~l~~N~l~~-l~--- 253 (454)
T 1jl5_A 184 QLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGN-NILEELP-E-LQNLPFLTTIYADNNLLKT-LP--- 253 (454)
T ss_dssp CCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCS-SCCSSCC-C-CTTCTTCCEEECCSSCCSS-CC---
T ss_pred cCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcC-CcCCccc-c-cCCCCCCCEEECCCCcCCc-cc---
Confidence 6665445666666666666666666655422 4666666666 3555554 2 5666666666666664321 11
Q ss_pred ccchhhhcCCCCCCEEEeeccCCCCCCccc------------------cccCccEEEEEecCcccccccccccceeEeec
Q 037947 672 NASLAELNQLSRLTTLEMHILDAQVMPREL------------------FSVGLERYKIFLGDVWSWTGKYETSRTLKLKL 733 (780)
Q Consensus 672 ~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~------------------~~~~L~~L~i~~~~~~~~~~~~~~l~~l~L~~ 733 (780)
. .+++|+.|+++.|.+..+|... ..++|+.|++..+.........+.++.++++.
T Consensus 254 -~------~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~ 326 (454)
T 1jl5_A 254 -D------LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN 326 (454)
T ss_dssp -S------CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCS
T ss_pred -c------cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCC
Confidence 0 1234444444444444433321 01344444444333222111123455555544
Q ss_pred CCCccchhHHHHHhcccceeeccccccccccccccCCCcccCccCC
Q 037947 734 DNPMYLEHGIKMLLRRTEDLHLDKLNGFQNVLHELDGEGFPRLKHL 779 (780)
Q Consensus 734 ~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L~~L 779 (780)
+.....+.. +++|+.|++++ +.++.++. .+++|++|
T Consensus 327 N~l~~lp~~----~~~L~~L~L~~-N~l~~lp~-----~l~~L~~L 362 (454)
T 1jl5_A 327 NKLIELPAL----PPRLERLIASF-NHLAEVPE-----LPQNLKQL 362 (454)
T ss_dssp SCCSCCCCC----CTTCCEEECCS-SCCSCCCC-----CCTTCCEE
T ss_pred Ccccccccc----CCcCCEEECCC-Cccccccc-----hhhhccEE
Confidence 433332322 46777777777 35555553 34566554
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.62 E-value=4.6e-17 Score=171.07 Aligned_cols=236 Identities=17% Similarity=0.140 Sum_probs=163.7
Q ss_pred ceEEEccCCCCccCCCccCCCCccEEEeccCccc-cccCchhh------cCCCCccEEEecCCCCC-CCCccc--cCCCC
Q 037947 513 PIAISLPCRDIQELPERLECPKLKLFFLFSKKLS-LVIPDLFF------EGVPSLQVLSLNGFHFP-SLPSTL--GCLIN 582 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~------~~l~~Lr~L~l~~~~~~-~lp~~i--~~l~~ 582 (780)
.+.+.+.++.+ .+|.... ..++.|++++|.+. ..+|..+. .+++.|++|++++|.++ .+|..+ ..+++
T Consensus 45 L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~ 122 (312)
T 1wwl_A 45 LEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122 (312)
T ss_dssp CTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCC
T ss_pred ceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCC
Confidence 44455566666 5554321 12888888888873 45665442 15899999999999998 678776 88999
Q ss_pred CCEEEccCccCCC-ccccccc-----CCCcEEEeecCCCCccC-hhhcCCCCCCEEecCCCCCCcc--cCcc-ccCCCcc
Q 037947 583 LQTLSFECCVLGD-VATVGAL-----KKLVILSFRNSHIEQLP-EEIGQLTRLKLLDLSNCSKLKS--IRPN-VISNLPR 652 (780)
Q Consensus 583 L~~L~L~~~~~~~-~~~i~~l-----~~L~~L~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~--~~~~-~l~~l~~ 652 (780)
|++|++++|.+.. |..++.+ .+|++|++++|.+..+| ..++.+++|++|++++|..... +++. .++.+++
T Consensus 123 L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~ 202 (312)
T 1wwl_A 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202 (312)
T ss_dssp CSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTT
T ss_pred ccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCC
Confidence 9999999999877 6666666 89999999999999887 6889999999999998432322 2222 1278899
Q ss_pred cceeeccCCCCccccccCCccch-hhhcCCCCCCEEEeeccCCCCCCc--cc-cccCccEEEEEecCcccccccc-cccc
Q 037947 653 LEELYMGNSFTHWEIEGQNNASL-AELNQLSRLTTLEMHILDAQVMPR--EL-FSVGLERYKIFLGDVWSWTGKY-ETSR 727 (780)
Q Consensus 653 L~~L~l~~~~~~~~~~~~~~~~l-~~l~~L~~L~~L~l~~~~~~~~~~--~~-~~~~L~~L~i~~~~~~~~~~~~-~~l~ 727 (780)
|++|++++|.+.. .+... .-+..+++|+.|+++.|.+...+. .. .+++|+.|++..+......... +.++
T Consensus 203 L~~L~L~~N~l~~-----~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~~L~ 277 (312)
T 1wwl_A 203 LQVLALRNAGMET-----PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS 277 (312)
T ss_dssp CCEEECTTSCCCC-----HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCCSEEE
T ss_pred CCEEECCCCcCcc-----hHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhccCCce
Confidence 9999999985421 11111 223577899999999998877552 22 5688999998776544322222 4566
Q ss_pred eeEeecCCCccchhHHHHHhcccceeeccc
Q 037947 728 TLKLKLDNPMYLEHGIKMLLRRTEDLHLDK 757 (780)
Q Consensus 728 ~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~ 757 (780)
.|.|+.+.....+. ...+++|+.|+|.+
T Consensus 278 ~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 278 VLDLSYNRLDRNPS--PDELPQVGNLSLKG 305 (312)
T ss_dssp EEECCSSCCCSCCC--TTTSCEEEEEECTT
T ss_pred EEECCCCCCCCChh--HhhCCCCCEEeccC
Confidence 66666554433333 34468888888877
No 80
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.61 E-value=3.5e-14 Score=151.66 Aligned_cols=296 Identities=12% Similarity=0.097 Sum_probs=178.4
Q ss_pred CCccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCC------CHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKP------DYKAIQN 221 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~~~~ 221 (780)
..+..|+||+.+++.|.+++... +++.|+|++|+|||||++.+++.. . .+|+++.... +...+..
T Consensus 9 ~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 9 TRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELIK 79 (350)
T ss_dssp CSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHHH
T ss_pred CChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHHH
Confidence 34567999999999999998754 799999999999999999998764 1 6777776543 5667777
Q ss_pred HHHHHcCCC---------------cC---CCCCHHHHHHHHHHHhcc-CcEEEEEeCCCCcccc-----ccccCCccccc
Q 037947 222 EIAGALGLF---------------LG---EHEDVSERAHLLRQRLKA-SRVLVILDDVWNRLDL-----DAVGIPYKNYQ 277 (780)
Q Consensus 222 ~i~~~l~~~---------------~~---~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~~~-----~~l~~~~~~~~ 277 (780)
.+.+.+... .. ...+..+..+.+.+..+. ++.+|||||++....+ ..+...+
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L---- 155 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALF---- 155 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHH----
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHH----
Confidence 777665430 00 012345555666665543 4999999999776542 1111111
Q ss_pred ccccCCCCCcEEEEEecchhHHhhh----------cCC-cceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHH
Q 037947 278 NEIKDDRRRCAMLLTSRRKDLLYNE----------MNS-QKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARE 346 (780)
Q Consensus 278 ~~l~~~~~~s~iivTtr~~~v~~~~----------~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~ 346 (780)
..+.+...+.++|+|++........ .+. ...+++.||+.+|+.+++......... ..-.+.+..|++.
T Consensus 156 ~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~~~~~~~~i~~~ 234 (350)
T 2qen_A 156 AYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DVPENEIEEAVEL 234 (350)
T ss_dssp HHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHH
Confidence 1112223578899998875431110 111 247999999999999999875432111 1224678899999
Q ss_pred hCCChHHHHHHHHHHhC-CChhHHH-HHHHHHhcCCCCCCCCchhhhhccccccccccCchhHHHHHHhhcccCCCCCcC
Q 037947 347 CGGLPVAITTVATALRN-KSLFVWK-DALLQLRSSNHRDISGLDSTVYSSVKLSYNFLKSLEAQSLFLLCSLLNDGSRIP 424 (780)
Q Consensus 347 c~GlPLai~~~~~~L~~-~~~~~w~-~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~ 424 (780)
|+|+|+++..++..+.. .+...+. ...+..... ....+.. +.+ . ++. .+..+..+|. + .++
T Consensus 235 tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~---l~~-~-~~~-~~~~l~~la~---g-~~~ 297 (350)
T 2qen_A 235 LDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGL-------IMGELEE---LRR-R-SPR-YVDILRAIAL---G-YNR 297 (350)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------HHHHHHH---HHH-H-CHH-HHHHHHHHHT---T-CCS
T ss_pred hCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHH-------HHHHHHH---HHh-C-Chh-HHHHHHHHHh---C-CCC
Confidence 99999999999876532 2322221 111110000 0011111 111 2 554 8888888887 2 244
Q ss_pred hhHHHHHHhccCcCCCcccHHHHHHHHHHHHHHHHhhcccccCCCCCceee-chhhHHHH
Q 037947 425 IDDLLRCAMGLDLFSDVFSLEEARSRMHHLIDDLQASCLLLDGDNKDDVKM-HDVIHDIA 483 (780)
Q Consensus 425 ~~~Li~~W~aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~m-Hdlv~d~~ 483 (780)
...+....-+.. - .-+. ..+..+++.|.+.+++... ...|++ |++++++.
T Consensus 298 ~~~l~~~~~~~~-~--~~~~----~~~~~~l~~L~~~gli~~~--~~~y~~~~p~~~~~~ 348 (350)
T 2qen_A 298 WSLIRDYLAVKG-T--KIPE----PRLYALLENLKKMNWIVEE--DNTYKIADPVVATVL 348 (350)
T ss_dssp HHHHHHHHHHTT-C--CCCH----HHHHHHHHHHHHTTSEEEE--TTEEEESSHHHHHHH
T ss_pred HHHHHHHHHHHh-C--CCCH----HHHHHHHHHHHhCCCEEec--CCEEEEecHHHHHHH
Confidence 455544332110 0 0111 2234568888889998754 245666 67777765
No 81
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.61 E-value=2.5e-14 Score=162.87 Aligned_cols=215 Identities=20% Similarity=0.161 Sum_probs=160.8
Q ss_pred CCceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccC
Q 037947 511 KDPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFEC 590 (780)
Q Consensus 511 ~~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 590 (780)
...+.|.+++|.+..+|. .+++|+.|++++|.+.. +|. .+++|+.|++++|.++.+|.. +++|++|++++
T Consensus 81 ~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~-l~~----~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~ 150 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTH-LPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD 150 (622)
T ss_dssp TTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCC-CCC----CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS
T ss_pred CCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCC-CCC----CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcC
Confidence 458999999999999887 78999999999998873 554 578999999999999999875 48999999999
Q ss_pred ccCCCcccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccC
Q 037947 591 CVLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQ 670 (780)
Q Consensus 591 ~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 670 (780)
|.++.++. .+.+|+.|++++|.++.+| ..+++|++|++++ +.++.+|. .+++|+.|++++|.+.. ++
T Consensus 151 N~l~~l~~--~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~-N~l~~l~~----~~~~L~~L~L~~N~l~~-l~-- 217 (622)
T 3g06_A 151 NQLASLPA--LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSD-NQLASLPT----LPSELYKLWAYNNRLTS-LP-- 217 (622)
T ss_dssp SCCSCCCC--CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSS-CC--
T ss_pred CcCCCcCC--ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCC-CCCCCCCC----ccchhhEEECcCCcccc-cC--
Confidence 99887443 3568889999999888888 5678899999988 67777753 24678888888875421 11
Q ss_pred CccchhhhcCCCCCCEEEeeccCCCCCCccccccCccEEEEEecCcccccccccccceeEeecCCCccchhHHHHHhccc
Q 037947 671 NNASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVWSWTGKYETSRTLKLKLDNPMYLEHGIKMLLRRT 750 (780)
Q Consensus 671 ~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L 750 (780)
..+++|+.|+++.|.+..+|. .+++|+.|++..+........+++++.|.|+.|.....+..+ ..+++|
T Consensus 218 --------~~~~~L~~L~Ls~N~L~~lp~--~l~~L~~L~Ls~N~L~~lp~~~~~L~~L~Ls~N~L~~lp~~l-~~l~~L 286 (622)
T 3g06_A 218 --------ALPSGLKELIVSGNRLTSLPV--LPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESL-IHLSSE 286 (622)
T ss_dssp --------CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCCSCCGGG-GGSCTT
T ss_pred --------CCCCCCCEEEccCCccCcCCC--CCCcCcEEECCCCCCCcCCcccccCcEEeCCCCCCCcCCHHH-hhcccc
Confidence 123678888888888777773 347788888877665544445566777777666544445443 335788
Q ss_pred ceeeccccc
Q 037947 751 EDLHLDKLN 759 (780)
Q Consensus 751 ~~L~l~~~~ 759 (780)
+.|+|++++
T Consensus 287 ~~L~L~~N~ 295 (622)
T 3g06_A 287 TTVNLEGNP 295 (622)
T ss_dssp CEEECCSCC
T ss_pred CEEEecCCC
Confidence 888887743
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.60 E-value=1.9e-15 Score=158.72 Aligned_cols=177 Identities=16% Similarity=0.179 Sum_probs=101.1
Q ss_pred CCCccEEEeccCccccccCchhh-cCCCCccEEEecCCCCCCCCccccCC-----CCCCEEEccCccCCC--cccccccC
Q 037947 532 CPKLKLFFLFSKKLSLVIPDLFF-EGVPSLQVLSLNGFHFPSLPSTLGCL-----INLQTLSFECCVLGD--VATVGALK 603 (780)
Q Consensus 532 ~~~L~~L~l~~~~~~~~~~~~~~-~~l~~Lr~L~l~~~~~~~lp~~i~~l-----~~L~~L~L~~~~~~~--~~~i~~l~ 603 (780)
+++|+.|++++|.+.+.+|..++ ..++.|++|++++|.++..|..++.+ ++|++|++++|.+.. +..++.++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 56666666666666655565543 55666666666666666556555555 666666666666655 24566666
Q ss_pred CCcEEEeecCCCCc---cChhh--cCCCCCCEEecCCCCCCccc---CccccCCCcccceeeccCCCCccccccCCccch
Q 037947 604 KLVILSFRNSHIEQ---LPEEI--GQLTRLKLLDLSNCSKLKSI---RPNVISNLPRLEELYMGNSFTHWEIEGQNNASL 675 (780)
Q Consensus 604 ~L~~L~l~~~~l~~---lp~~i--~~l~~L~~L~l~~~~~l~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l 675 (780)
+|++|++++|.+.. +|..+ +.+++|++|++++ +.++.+ +...+..+++|++|++++|.+.... ..
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------~~ 246 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN-AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA------GA 246 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTT-SCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC------CC
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCC-CcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc------ch
Confidence 66666666665432 24344 5666666666666 445422 2222345566666666666432211 01
Q ss_pred hhhcCCCCCCEEEeeccCCCCCCccccccCccEEEEEecCc
Q 037947 676 AELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDV 716 (780)
Q Consensus 676 ~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~ 716 (780)
..+..+++|+.|+++.|.+..+|..+. ++|+.|++..+..
T Consensus 247 ~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRL 286 (312)
T ss_dssp SCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCC
T ss_pred hhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCC
Confidence 223345666666666666666666554 5666666655443
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=5.8e-15 Score=148.57 Aligned_cols=182 Identities=18% Similarity=0.267 Sum_probs=143.1
Q ss_pred CCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCC-CCCCCc-cccCCCCCCEEEccC-ccCCC-
Q 037947 520 CRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFH-FPSLPS-TLGCLINLQTLSFEC-CVLGD- 595 (780)
Q Consensus 520 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~lp~-~i~~l~~L~~L~L~~-~~~~~- 595 (780)
+..+..+|. -.++++.|++++|.+. .+|...|.+++.|++|++++|. ++.+|. .+..+++|++|++++ |.++.
T Consensus 20 c~~l~~ip~--~~~~l~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i 96 (239)
T 2xwt_C 20 CKDIQRIPS--LPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI 96 (239)
T ss_dssp ECSCSSCCC--CCTTCCEEEEESCCCS-EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE
T ss_pred ccCccccCC--CCCcccEEEEeCCcce-EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc
Confidence 334667776 3458999999999987 4666567889999999999997 887765 788999999999998 88877
Q ss_pred -cccccccCCCcEEEeecCCCCccChhhcCCCCCC---EEecCCCCCCcccCccccCCCcccc-eeeccCCCCccccccC
Q 037947 596 -VATVGALKKLVILSFRNSHIEQLPEEIGQLTRLK---LLDLSNCSKLKSIRPNVISNLPRLE-ELYMGNSFTHWEIEGQ 670 (780)
Q Consensus 596 -~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~---~L~l~~~~~l~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~ 670 (780)
+..+..+.+|++|++++|.++.+|. +..+++|+ +|++++|..++.+++..+..+++|+ +|++++|.+. .++.
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~- 173 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG- 173 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT-
T ss_pred CHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH-
Confidence 3468899999999999999999997 88888888 9999995488999888789999999 9999988653 2221
Q ss_pred CccchhhhcCCCCCCEEEeeccC-CCCCCccc--cc-cCccEEEEEe
Q 037947 671 NNASLAELNQLSRLTTLEMHILD-AQVMPREL--FS-VGLERYKIFL 713 (780)
Q Consensus 671 ~~~~l~~l~~L~~L~~L~l~~~~-~~~~~~~~--~~-~~L~~L~i~~ 713 (780)
..+.. ++|+.|+++.|. +..++... .+ ++|+.|++..
T Consensus 174 -----~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~ 214 (239)
T 2xwt_C 174 -----YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214 (239)
T ss_dssp -----TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred -----hhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence 12223 678899999884 77776554 45 6777777644
No 84
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.59 E-value=4.2e-14 Score=156.11 Aligned_cols=215 Identities=22% Similarity=0.236 Sum_probs=150.7
Q ss_pred CceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCc
Q 037947 512 DPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECC 591 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 591 (780)
..+.|.+.+|.+..+|.. +++|+.|++++|.+.+ +|. ..+.|++|++++|.++.+| .++.+++|++|++++|
T Consensus 92 ~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 92 HLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp TCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCEEEccCCcCCccccc--cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC
Confidence 477888887777777643 4778888888877653 332 1257888888888888877 5888888888888888
Q ss_pred cCCCcccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCC
Q 037947 592 VLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQN 671 (780)
Q Consensus 592 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 671 (780)
.+..++.. ..+|++|++++|.+..+| .++.+++|++|++++ +.++.+|.. .++|++|++++|... .
T Consensus 164 ~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~-N~l~~l~~~----~~~L~~L~l~~n~l~-~----- 229 (454)
T 1jl5_A 164 SLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADN-NSLKKLPDL----PLSLESIVAGNNILE-E----- 229 (454)
T ss_dssp CCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS-SCCSSCCCC----CTTCCEEECCSSCCS-S-----
T ss_pred cCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCC-CcCCcCCCC----cCcccEEECcCCcCC-c-----
Confidence 87763322 247888888888888887 588888888888887 566666432 257888888887542 1
Q ss_pred ccchhhhcCCCCCCEEEeeccCCCCCCccccccCccEEEEEecCcccccccccccceeEeecCCCccchhHHHHHhcccc
Q 037947 672 NASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDVWSWTGKYETSRTLKLKLDNPMYLEHGIKMLLRRTE 751 (780)
Q Consensus 672 ~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~ 751 (780)
+.++..+++|+.|+++.|.+..+|.. +++|+.|++..+.........+.++.+.++.+.....+. ..++|+
T Consensus 230 ---lp~~~~l~~L~~L~l~~N~l~~l~~~--~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~----~~~~L~ 300 (454)
T 1jl5_A 230 ---LPELQNLPFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE----LPPNLY 300 (454)
T ss_dssp ---CCCCTTCTTCCEEECCSSCCSSCCSC--CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESC----CCTTCC
T ss_pred ---ccccCCCCCCCEEECCCCcCCccccc--ccccCEEECCCCcccccCcccCcCCEEECcCCccCcccC----cCCcCC
Confidence 12367888999999999988887764 478899998776654444445667777776554332221 125777
Q ss_pred eeeccc
Q 037947 752 DLHLDK 757 (780)
Q Consensus 752 ~L~l~~ 757 (780)
.|++++
T Consensus 301 ~L~l~~ 306 (454)
T 1jl5_A 301 YLNASS 306 (454)
T ss_dssp EEECCS
T ss_pred EEECcC
Confidence 777776
No 85
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.58 E-value=2.1e-14 Score=148.86 Aligned_cols=180 Identities=21% Similarity=0.278 Sum_probs=151.6
Q ss_pred CCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCCcccc
Q 037947 520 CRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGDVATV 599 (780)
Q Consensus 520 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i 599 (780)
...+..+.....+++|+.|++++|.+. .++. +..+++|++|++++|.++.++. +..+++|++|++++|.+..++.+
T Consensus 33 ~~~~~~~~~~~~l~~L~~L~l~~~~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l 108 (291)
T 1h6t_A 33 KKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSL 108 (291)
T ss_dssp CSCTTSEECHHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGG
T ss_pred CCCcccccchhhcCcccEEEccCCCcc-cChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhh
Confidence 344444444446889999999999876 3443 5789999999999999998877 99999999999999999998889
Q ss_pred cccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhc
Q 037947 600 GALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELN 679 (780)
Q Consensus 600 ~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ 679 (780)
+.+.+|++|++++|.+..+| .+..+++|++|++++ +.++.+ ..++.+++|++|++++|.+.. +..+.
T Consensus 109 ~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~-n~l~~~--~~l~~l~~L~~L~L~~N~l~~---------~~~l~ 175 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDI--TVLSRLTKLDTLSLEDNQISD---------IVPLA 175 (291)
T ss_dssp TTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCS-SCCCCC--GGGGGCTTCSEEECCSSCCCC---------CGGGT
T ss_pred ccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccC-CcCCcc--hhhccCCCCCEEEccCCcccc---------chhhc
Confidence 99999999999999999985 589999999999999 677777 348899999999999985421 12278
Q ss_pred CCCCCCEEEeeccCCCCCCccccccCccEEEEEecCc
Q 037947 680 QLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDV 716 (780)
Q Consensus 680 ~L~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~ 716 (780)
.+++|+.|+++.|.+..++....+++|+.|++..+..
T Consensus 176 ~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp TCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEE
T ss_pred CCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcc
Confidence 8999999999999999887655889999999987654
No 86
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.57 E-value=1.3e-13 Score=147.56 Aligned_cols=294 Identities=13% Similarity=0.130 Sum_probs=169.6
Q ss_pred CccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC-----CCHHHHHHHH
Q 037947 149 GYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK-----PDYKAIQNEI 223 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~~~~~i 223 (780)
.+..|+||+++++.|.+ +.. +++.|+|++|+|||||++.+.+.... ..+|+++... .+...+...+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHHH
Confidence 45679999999999999 755 69999999999999999999987632 2578887653 3455555555
Q ss_pred HHHcCC-------------C-----cC-----------CCCCHHHHHHHHHHHhccCcEEEEEeCCCCcccc--ccccCC
Q 037947 224 AGALGL-------------F-----LG-----------EHEDVSERAHLLRQRLKASRVLVILDDVWNRLDL--DAVGIP 272 (780)
Q Consensus 224 ~~~l~~-------------~-----~~-----------~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~--~~l~~~ 272 (780)
.+.+.. . .. ...........+.+.-+ ++++|||||++....- ..+.
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~-- 158 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLL-- 158 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCH--
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHH--
Confidence 443310 0 00 01123333333333222 4899999999764321 1110
Q ss_pred cccccccccCCCCCcEEEEEecchhHHhhh---------c-CC-cceEEcCCCChHHHHHHHHHhhCC-CCCCCChhHHH
Q 037947 273 YKNYQNEIKDDRRRCAMLLTSRRKDLLYNE---------M-NS-QKNFLINVLSDQEAVQLFEKMSGV-FEGPLDFQNLA 340 (780)
Q Consensus 273 ~~~~~~~l~~~~~~s~iivTtr~~~v~~~~---------~-~~-~~~~~l~~L~~~~~~~Lf~~~~~~-~~~~~~~~~~~ 340 (780)
.++..+.+...+.++|+|++........ . +. ...+++.||+.+++.+++...+.. ....+. .
T Consensus 159 --~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~---~- 232 (357)
T 2fna_A 159 --PALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD---Y- 232 (357)
T ss_dssp --HHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC---H-
T ss_pred --HHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc---H-
Confidence 1111112223478899999976432111 1 11 257999999999999999876531 111222 1
Q ss_pred HHHHHHhCCChHHHHHHHHHHhC-CChhHHHH-HHHHHhcCCCCCCCCchhhhhccccccccccCchhHHHHHHhhcccC
Q 037947 341 IKIARECGGLPVAITTVATALRN-KSLFVWKD-ALLQLRSSNHRDISGLDSTVYSSVKLSYNFLKSLEAQSLFLLCSLLN 418 (780)
Q Consensus 341 ~~i~~~c~GlPLai~~~~~~L~~-~~~~~w~~-~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp 418 (780)
..|++.|+|+|+++..++..+.. .+...|.. +.+..... ....+...+.- -..+|+. .+..+..+|.
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~-~~~l~~~-~~~~l~~la~-- 301 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKL-------ILKEFENFLHG-REIARKR-YLNIMRTLSK-- 301 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------HHHHHHHHHTT-CGGGHHH-HHHHHHHHTT--
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHH-------HHHHHHHHhhc-cccccHH-HHHHHHHHHc--
Confidence 78999999999999999887653 23333321 11110000 00111111100 0157775 8888888887
Q ss_pred CCCCcChhHHHHHHh-ccCcCCCcccHHHHHHHHHHHHHHHHhhcccccCCCCCceee-chhhHHHH
Q 037947 419 DGSRIPIDDLLRCAM-GLDLFSDVFSLEEARSRMHHLIDDLQASCLLLDGDNKDDVKM-HDVIHDIA 483 (780)
Q Consensus 419 ~~~~i~~~~Li~~W~-aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~m-Hdlv~d~~ 483 (780)
+. +...+....- ..|. .-+. .....+++.|++.+++...+ ..|++ |++++++.
T Consensus 302 -g~--~~~~l~~~~~~~~g~---~~~~----~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 -CG--KWSDVKRALELEEGI---EISD----SEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp -CB--CHHHHHHHHHHHHCS---CCCH----HHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred -CC--CHHHHHHHHHHhcCC---CCCH----HHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 22 4444432110 0120 0011 22445688888999987653 45775 77888763
No 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.57 E-value=2e-14 Score=163.58 Aligned_cols=172 Identities=25% Similarity=0.342 Sum_probs=149.2
Q ss_pred CceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCc
Q 037947 512 DPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECC 591 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 591 (780)
.++.|.+.++.+..++....+++|+.|++++|.+.. ++. +..++.|+.|+|++|.++.+| .+..+++|++|+|++|
T Consensus 44 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHN 119 (605)
T ss_dssp TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTS
T ss_pred CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCC
Confidence 477889999999999887789999999999999875 343 678999999999999999876 7899999999999999
Q ss_pred cCCCcccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCC
Q 037947 592 VLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQN 671 (780)
Q Consensus 592 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 671 (780)
.+..++.+..+++|+.|+|++|.+..+ ..+..+++|++|+|++ +.+..+++ +..+++|+.|++++|.+..
T Consensus 120 ~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~-N~l~~~~~--l~~l~~L~~L~Ls~N~i~~------ 189 (605)
T 1m9s_A 120 GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP--LAGLTKLQNLYLSKNHISD------ 189 (605)
T ss_dssp CCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCS-SCCCCCGG--GTTCTTCCEEECCSSCCCB------
T ss_pred CCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcC-CcCCCchh--hccCCCCCEEECcCCCCCC------
Confidence 999988999999999999999999988 5689999999999998 67888766 8899999999999985421
Q ss_pred ccchhhhcCCCCCCEEEeeccCCCCCCcc
Q 037947 672 NASLAELNQLSRLTTLEMHILDAQVMPRE 700 (780)
Q Consensus 672 ~~~l~~l~~L~~L~~L~l~~~~~~~~~~~ 700 (780)
+..+..+++|+.|+++.|.+...|..
T Consensus 190 ---l~~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 190 ---LRALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp ---CGGGTTCTTCSEEECCSEEEECCCCC
T ss_pred ---ChHHccCCCCCEEEccCCcCcCCccc
Confidence 24688899999999999887665544
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.55 E-value=6.7e-14 Score=141.83 Aligned_cols=171 Identities=23% Similarity=0.276 Sum_probs=141.7
Q ss_pred CCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCC-ccccCCCCCCEEEccCccCCC--cccccccCCCcEEE
Q 037947 533 PKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP-STLGCLINLQTLSFECCVLGD--VATVGALKKLVILS 609 (780)
Q Consensus 533 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~ 609 (780)
.+.+.++++++.+. .+|..+ .+.|+.|++++|.++.++ ..+..+++|++|++++|.+.. +..+..+.+|++|+
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCcc-ccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEE
Confidence 35678888888776 577654 368999999999998764 578999999999999999987 34589999999999
Q ss_pred eecCCCCccCh-hhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEE
Q 037947 610 FRNSHIEQLPE-EIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLE 688 (780)
Q Consensus 610 l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~ 688 (780)
+++|.+..+|. .+..+++|++|++++ +.++.+++..++.+++|++|++++|.+....+ ..+..+++|+.|+
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------~~~~~l~~L~~L~ 161 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-------GAFDKLTNLQTLS 161 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------TTTTTCTTCCEEE
T ss_pred CCCCcccccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCCcccEEECcCCcCCccCH-------HHcCcCcCCCEEE
Confidence 99999999875 468999999999999 78899988878899999999999986532111 3577889999999
Q ss_pred eeccCCCCCCccc--cccCccEEEEEecC
Q 037947 689 MHILDAQVMPREL--FSVGLERYKIFLGD 715 (780)
Q Consensus 689 l~~~~~~~~~~~~--~~~~L~~L~i~~~~ 715 (780)
++.|.+..++... .+++|+.|.+.++.
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 9999998888754 67888998886544
No 89
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.54 E-value=6.5e-14 Score=138.65 Aligned_cols=148 Identities=14% Similarity=0.254 Sum_probs=110.7
Q ss_pred eEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCc-cccCCCCCCEEEccCcc
Q 037947 514 IAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGCLINLQTLSFECCV 592 (780)
Q Consensus 514 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~ 592 (780)
+.+.++++.+..+|... ...++.|++++|.+....+...|..++.|++|++++|.++.+|. .+..+++|++|+|++|.
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 46777777777777533 34567888888887755555566778888888888888876654 67788888888888888
Q ss_pred CCC--cccccccCCCcEEEeecCCCCcc-ChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCC
Q 037947 593 LGD--VATVGALKKLVILSFRNSHIEQL-PEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFT 663 (780)
Q Consensus 593 ~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 663 (780)
+.. +..+..+.+|++|++++|.+..+ |..+..+++|++|++++ +.++.++|..+..+++|++|++++|.+
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 776 33477888888888888888776 56677888888888887 677777677777888888888877754
No 90
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=1.1e-13 Score=137.86 Aligned_cols=148 Identities=22% Similarity=0.324 Sum_probs=124.8
Q ss_pred eEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCc-cccCCCCCCEEEccCcc
Q 037947 514 IAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGCLINLQTLSFECCV 592 (780)
Q Consensus 514 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~ 592 (780)
..+...++.+..+|... .++|+.|++++|.+....| ..|..++.|++|+|++|.++.+|. .+..+++|++|+|++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGI-PTNAQILYLHDNQITKLEP-GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCC-CCCCCEEEcCCCccCccCH-HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 45777777888888644 3889999999999886444 446889999999999999998875 46889999999999999
Q ss_pred CCCc--ccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCc
Q 037947 593 LGDV--ATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTH 664 (780)
Q Consensus 593 ~~~~--~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 664 (780)
++.+ ..+..+.+|++|++++|.+..+|..+..+++|++|++++ +.++.+++..+..+++|+.|++.+|.+.
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 8883 346889999999999999999999999999999999998 7888888777888999999999988653
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=1.9e-14 Score=150.97 Aligned_cols=11 Identities=36% Similarity=0.598 Sum_probs=6.5
Q ss_pred hcccceeeccc
Q 037947 747 LRRTEDLHLDK 757 (780)
Q Consensus 747 l~~L~~L~l~~ 757 (780)
+++|+.|+|++
T Consensus 293 l~~L~~L~L~~ 303 (310)
T 4glp_A 293 LPEVDNLTLDG 303 (310)
T ss_dssp CCCCSCEECSS
T ss_pred CCCccEEECcC
Confidence 45666666655
No 92
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.52 E-value=7e-14 Score=137.31 Aligned_cols=171 Identities=22% Similarity=0.315 Sum_probs=129.1
Q ss_pred eEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCcc-ccCCCCCCEEEccCcc
Q 037947 514 IAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPST-LGCLINLQTLSFECCV 592 (780)
Q Consensus 514 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~ 592 (780)
+.+...++.+..+|... .++++.|++++|.+. .++...+..++.|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC-CCCCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 34566666777776533 468899999999887 56666678889999999999998877654 5788999999999998
Q ss_pred CCCc--ccccccCCCcEEEeecCCCCccChh-hcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCcccccc
Q 037947 593 LGDV--ATVGALKKLVILSFRNSHIEQLPEE-IGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEG 669 (780)
Q Consensus 593 ~~~~--~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 669 (780)
+..+ ..++.+.+|++|++++|.+..+|.. +..+++|++|++++ +.++.+++..+..+++|++|++++|...
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCee-----
Confidence 8773 3468889999999999988888765 67889999999988 6788887776788899999999888432
Q ss_pred CCccchhhhcCCCCCCEEEeeccCCC-CCCccc
Q 037947 670 QNNASLAELNQLSRLTTLEMHILDAQ-VMPREL 701 (780)
Q Consensus 670 ~~~~~l~~l~~L~~L~~L~l~~~~~~-~~~~~~ 701 (780)
..+++|+.|++..|... .+|..+
T Consensus 162 ---------~~~~~l~~L~~~~n~~~g~ip~~~ 185 (208)
T 2o6s_A 162 ---------CTCPGIRYLSEWINKHSGVVRNSA 185 (208)
T ss_dssp ---------CCTTTTHHHHHHHHHCTTTBBCTT
T ss_pred ---------cCCCCHHHHHHHHHhCCceeeccC
Confidence 23445666666665533 344443
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.52 E-value=5e-14 Score=160.23 Aligned_cols=182 Identities=21% Similarity=0.280 Sum_probs=152.2
Q ss_pred ccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCCcc
Q 037947 518 LPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGDVA 597 (780)
Q Consensus 518 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~ 597 (780)
+..+.+..+.....+++|+.|.+++|.+. .+|. +..+++|+.|+|++|.++.+|. +..+++|++|+|++|.+..++
T Consensus 28 l~~~~i~~~~~~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~ 103 (605)
T 1m9s_A 28 LKKKSVTDAVTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS 103 (605)
T ss_dssp TTCSCTTSEECHHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT
T ss_pred ccCCCcccccchhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh
Confidence 33444444444457889999999999876 3453 5789999999999999998876 899999999999999999988
Q ss_pred cccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhh
Q 037947 598 TVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAE 677 (780)
Q Consensus 598 ~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 677 (780)
.++.+++|+.|+|++|.+..+| .+..+++|+.|++++ +.++.+ ..++.+++|+.|++++|.+.. +..
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l--~~l~~l~~L~~L~Ls~N~l~~---------~~~ 170 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGN-NKITDI--TVLSRLTKLDTLSLEDNQISD---------IVP 170 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCS-SCCCCC--GGGGSCTTCSEEECCSSCCCC---------CGG
T ss_pred hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCC-CccCCc--hhhcccCCCCEEECcCCcCCC---------chh
Confidence 9999999999999999999886 489999999999999 677777 348999999999999985421 122
Q ss_pred hcCCCCCCEEEeeccCCCCCCccccccCccEEEEEecCc
Q 037947 678 LNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLGDV 716 (780)
Q Consensus 678 l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~~~ 716 (780)
+..+++|+.|+|+.|.+..++....+++|+.|.+..+..
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEE
T ss_pred hccCCCCCEEECcCCCCCCChHHccCCCCCEEEccCCcC
Confidence 788999999999999998886555889999999976554
No 94
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.52 E-value=4.1e-13 Score=155.60 Aligned_cols=140 Identities=27% Similarity=0.334 Sum_probs=118.6
Q ss_pred CCceEEEccCCCCccCCC--ccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCc-cccCCCCCCEEE
Q 037947 511 KDPIAISLPCRDIQELPE--RLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGCLINLQTLS 587 (780)
Q Consensus 511 ~~~~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~ 587 (780)
..+++|.+++|.+..++. +..+++|++|++++|.+. .+|++.|.++++|++|+|++|.++.+|. .+..+.+|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 358999999999999875 348999999999999887 5677778899999999999999998875 578999999999
Q ss_pred ccCccCCCc--ccccccCCCcEEEeecCCCCc--cChhhcCCCCCCEEecCCCCCCcccCccccCCCcc
Q 037947 588 FECCVLGDV--ATVGALKKLVILSFRNSHIEQ--LPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPR 652 (780)
Q Consensus 588 L~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~--lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~ 652 (780)
+++|.++.+ ..++++.+|++|++++|.+.. +|..++.+++|++|++++ +.++.+++..+..+.+
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~L~~ 198 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQ 198 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC-ccccccccccccchhh
Confidence 999999883 358999999999999998875 578889999999999998 6777776655544443
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=6.2e-14 Score=146.94 Aligned_cols=192 Identities=16% Similarity=0.092 Sum_probs=118.3
Q ss_pred CceEEEccCCCCccC-CCc---cCCCCccEEEeccCccccccC---chhhcCCCCccEEEecCCCCCCCC-ccccCCCCC
Q 037947 512 DPIAISLPCRDIQEL-PER---LECPKLKLFFLFSKKLSLVIP---DLFFEGVPSLQVLSLNGFHFPSLP-STLGCLINL 583 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~-~~~---~~~~~L~~L~l~~~~~~~~~~---~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L 583 (780)
.+++|.+.+|.+... |.. ..+++|++|++++|.+....+ ...+..++.|++|++++|.++.+| ..++.+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 367777777766543 222 356777777777777665433 112235677777777777776553 566777777
Q ss_pred CEEEccCccCCC------cccccccCCCcEEEeecCCCCccChh----hcCCCCCCEEecCCCCCCcccCccccCCC---
Q 037947 584 QTLSFECCVLGD------VATVGALKKLVILSFRNSHIEQLPEE----IGQLTRLKLLDLSNCSKLKSIRPNVISNL--- 650 (780)
Q Consensus 584 ~~L~L~~~~~~~------~~~i~~l~~L~~L~l~~~~l~~lp~~----i~~l~~L~~L~l~~~~~l~~~~~~~l~~l--- 650 (780)
++|++++|.+.. ...++.+++|++|++++|.++.+|.. ++.+++|++|++++ +.++...|..++.+
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH-NSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT-SCCCCCCCSCCSSCCCC
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC-CCCCccchhhHHhccCc
Confidence 777777776543 12235677777777777777666552 45667777777777 55665533335555
Q ss_pred cccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCCCCCccccccCccEEEEEec
Q 037947 651 PRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKIFLG 714 (780)
Q Consensus 651 ~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i~~~ 714 (780)
++|++|++++|.+. .++ ..+ .++|+.|+++.|.+..+|....+++|+.|.+..+
T Consensus 251 ~~L~~L~Ls~N~l~-~lp-------~~~--~~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 251 SALNSLNLSFAGLE-QVP-------KGL--PAKLRVLDLSSNRLNRAPQPDELPEVDNLTLDGN 304 (310)
T ss_dssp TTCCCEECCSSCCC-SCC-------SCC--CSCCSCEECCSCCCCSCCCTTSCCCCSCEECSST
T ss_pred CcCCEEECCCCCCC-chh-------hhh--cCCCCEEECCCCcCCCCchhhhCCCccEEECcCC
Confidence 57777777777543 121 111 1567777777777766655335666777666543
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=9.7e-14 Score=134.95 Aligned_cols=150 Identities=18% Similarity=0.251 Sum_probs=103.4
Q ss_pred CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCC--cccccccCCCcEE
Q 037947 531 ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGD--VATVGALKKLVIL 608 (780)
Q Consensus 531 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L 608 (780)
.+++|+.|++++|.+. .+| . +..+++|++|++++|.++.++ .+..+++|++|++++|.+.. +..++.+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 4667778888877766 455 2 466778888888877666543 67777888888888877765 6677777888888
Q ss_pred EeecCCCCc-cChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEE
Q 037947 609 SFRNSHIEQ-LPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTL 687 (780)
Q Consensus 609 ~l~~~~l~~-lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L 687 (780)
++++|.+.. .|..++.+++|++|++++|..++.++ .+..+++|++|++++|.+.. +..+..+++|+.|
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~---------~~~l~~l~~L~~L 186 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHD---------YRGIEDFPKLNQL 186 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCC---------CTTGGGCSSCCEE
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcC---------hHHhccCCCCCEE
Confidence 888777764 56677777888888887754466664 26777778888877774321 1256667777777
Q ss_pred EeeccCCC
Q 037947 688 EMHILDAQ 695 (780)
Q Consensus 688 ~l~~~~~~ 695 (780)
+++.|.+.
T Consensus 187 ~l~~N~i~ 194 (197)
T 4ezg_A 187 YAFSQTIG 194 (197)
T ss_dssp EECBC---
T ss_pred EeeCcccC
Confidence 77777644
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.50 E-value=1.8e-13 Score=135.44 Aligned_cols=147 Identities=20% Similarity=0.288 Sum_probs=105.2
Q ss_pred eEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC-CccccCCCCCCEEEccCcc
Q 037947 514 IAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGCLINLQTLSFECCV 592 (780)
Q Consensus 514 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~ 592 (780)
+.+...++.+..+|.... ++++.|++++|.+. .++...|..++.|++|+|++|.++.+ |..+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~-~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCC-EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCC-CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 345666667777765432 57788888887776 34544567778888888888887755 6677778888888888887
Q ss_pred CCC-cc-cccccCCCcEEEeecCCCCcc-ChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCC
Q 037947 593 LGD-VA-TVGALKKLVILSFRNSHIEQL-PEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFT 663 (780)
Q Consensus 593 ~~~-~~-~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 663 (780)
+.. ++ .+..+.+|++|++++|.+..+ |..+..+++|++|++++ +.++.+++..+..+++|++|++++|.+
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 776 22 356778888888888877776 44677778888888877 677777766677777778887777754
No 98
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=1e-13 Score=141.32 Aligned_cols=168 Identities=20% Similarity=0.224 Sum_probs=126.7
Q ss_pred EEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCC
Q 037947 515 AISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLG 594 (780)
Q Consensus 515 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~ 594 (780)
.+.+..+.+..++....+++|+.|++++|.+. .++ . +..+++|+.|++++|.++.+|. +..+++|++|++++|.+.
T Consensus 23 ~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~ 98 (263)
T 1xeu_A 23 KQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK 98 (263)
T ss_dssp HHHHTCSCTTSEECHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS
T ss_pred HHHhcCCCcccccchhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC
Confidence 34455566666665557788888888888765 455 2 5678888888888888888776 888888888888888888
Q ss_pred CcccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccc
Q 037947 595 DVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNAS 674 (780)
Q Consensus 595 ~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 674 (780)
.++.+.. .+|++|++++|.++.+| .+..+++|++|++++ +.++.++ .++.+++|++|++++|.+...
T Consensus 99 ~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~--~l~~l~~L~~L~L~~N~i~~~-------- 165 (263)
T 1xeu_A 99 NLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIV--MLGFLSKLEVLDLHGNEITNT-------- 165 (263)
T ss_dssp CCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCG--GGGGCTTCCEEECTTSCCCBC--------
T ss_pred CcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCCh--HHccCCCCCEEECCCCcCcch--------
Confidence 7555555 88888888888888876 488888888888888 6777774 377888888888888854211
Q ss_pred hhhhcCCCCCCEEEeeccCCCCCCcc
Q 037947 675 LAELNQLSRLTTLEMHILDAQVMPRE 700 (780)
Q Consensus 675 l~~l~~L~~L~~L~l~~~~~~~~~~~ 700 (780)
..+..+++|+.|+++.|.+...|..
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred -HHhccCCCCCEEeCCCCcccCCccc
Confidence 4567788888888888876655543
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=3.4e-13 Score=151.66 Aligned_cols=181 Identities=17% Similarity=0.201 Sum_probs=144.9
Q ss_pred CceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCc
Q 037947 512 DPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECC 591 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 591 (780)
.++.|.+.++.+..+|... +++|+.|++++|.+. .+| ..+++|++|++++|.++.+|. ++. +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQNALI-SLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 5889999999998888754 488999999999987 677 347899999999999999888 665 9999999999
Q ss_pred cCCCcccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCC
Q 037947 592 VLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQN 671 (780)
Q Consensus 592 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 671 (780)
.++.++. .+.+|++|++++|.++.+|. .+++|++|++++ +.++.+|+ ++ ++|+.|++++|.+. .++. .
T Consensus 131 ~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~--l~--~~L~~L~Ls~N~L~-~lp~-~ 198 (571)
T 3cvr_A 131 QLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPE--LP--ESLEALDVSTNLLE-SLPA-V 198 (571)
T ss_dssp CCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC--CC--TTCCEEECCSSCCS-SCCC-C
T ss_pred cCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCC-CCCCCcch--hh--CCCCEEECcCCCCC-chhh-H
Confidence 9988555 78999999999999999997 678999999998 67888865 55 89999999998653 2221 1
Q ss_pred ccchhhh-cCCCCCCEEEeeccCCCCCCccc-cccCccEEEEEecCc
Q 037947 672 NASLAEL-NQLSRLTTLEMHILDAQVMPREL-FSVGLERYKIFLGDV 716 (780)
Q Consensus 672 ~~~l~~l-~~L~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~i~~~~~ 716 (780)
. ..+ .....|+.|+++.|.+..+|..+ .+++|+.|++..+..
T Consensus 199 ~---~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 199 P---VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp C-----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred H---HhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 1 111 11233499999999999999877 788999999977654
No 100
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.49 E-value=1.4e-14 Score=153.84 Aligned_cols=174 Identities=18% Similarity=0.265 Sum_probs=88.2
Q ss_pred CceEEEccCCCCccCCC-ccCCCCccEEEeccCccccc-cCchhhcCCCCccEEEecCCCCC-CCCccccCCCCCCEEEc
Q 037947 512 DPIAISLPCRDIQELPE-RLECPKLKLFFLFSKKLSLV-IPDLFFEGVPSLQVLSLNGFHFP-SLPSTLGCLINLQTLSF 588 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~Lr~L~l~~~~~~-~lp~~i~~l~~L~~L~L 588 (780)
.++.+.+.++.+...+. ...+++|+.|++++|.+... +| ..+..+++|++|++++|.++ ..|..++.+++|++|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLH-GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHH-HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHH-HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 35556665555443322 22555666666666554433 22 23455566666666666555 34455555666666666
Q ss_pred cCc-cCCC---cccccccCCCcEEEeecC-CCCc--cChhhcCCC-CCCEEecCCCC-CCc--ccCccccCCCcccceee
Q 037947 589 ECC-VLGD---VATVGALKKLVILSFRNS-HIEQ--LPEEIGQLT-RLKLLDLSNCS-KLK--SIRPNVISNLPRLEELY 657 (780)
Q Consensus 589 ~~~-~~~~---~~~i~~l~~L~~L~l~~~-~l~~--lp~~i~~l~-~L~~L~l~~~~-~l~--~~~~~~l~~l~~L~~L~ 657 (780)
++| .++. +..+.++++|++|++++| .++. +|..+..++ +|++|++++|. .++ .+ +..+.++++|++|+
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l-~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDL-STLVRRCPNLVHLD 228 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHH-HHHHHHCTTCSEEE
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHH-HHHHhhCCCCCEEe
Confidence 665 3442 233555566666666665 5553 455555555 66666666542 222 12 22344555666666
Q ss_pred ccCCCCccccccCCccchhhhcCCCCCCEEEeeccC
Q 037947 658 MGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILD 693 (780)
Q Consensus 658 l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~ 693 (780)
+++|... . ...+..+.++++|+.|+++.|.
T Consensus 229 l~~~~~l---~---~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 229 LSDSVML---K---NDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CTTCTTC---C---GGGGGGGGGCTTCCEEECTTCT
T ss_pred CCCCCcC---C---HHHHHHHhCCCCCCEeeCCCCC
Confidence 6555310 0 1112344455556666665553
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=2.1e-13 Score=132.55 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=127.0
Q ss_pred CceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCC-CCccccCCCCCCEEEccC
Q 037947 512 DPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPS-LPSTLGCLINLQTLSFEC 590 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-lp~~i~~l~~L~~L~L~~ 590 (780)
.+++|.+.++.+..++....+++|+.|++++|.+. .++ .+..++.|++|++++|.++. .|..++.+++|++|++++
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~--~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT--NYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS--CCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CccEEeccCCCccChHHHhcCCCCCEEEccCCCCC--cch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 47899999999999887678999999999999654 233 35789999999999999985 688899999999999999
Q ss_pred ccCCC--cccccccCCCcEEEeecCC-CCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCC
Q 037947 591 CVLGD--VATVGALKKLVILSFRNSH-IEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFT 663 (780)
Q Consensus 591 ~~~~~--~~~i~~l~~L~~L~l~~~~-l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 663 (780)
|.+.. +..++.+++|++|++++|. +..+| .+..+++|++|++++ +.++.++ .+..+++|++|++++|.+
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~-n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQF-DGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTT-BCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCC-CCCcChH--HhccCCCCCEEEeeCccc
Confidence 99987 7889999999999999997 99998 699999999999999 6788775 478999999999999853
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=7.1e-13 Score=131.16 Aligned_cols=147 Identities=17% Similarity=0.243 Sum_probs=108.6
Q ss_pred cEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCc-cccCCCCCCEEEccCccCCC--cccccccCCCcEEEeec
Q 037947 536 KLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGCLINLQTLSFECCVLGD--VATVGALKKLVILSFRN 612 (780)
Q Consensus 536 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~ 612 (780)
+.++++++.+. .+|..+ .+.|+.|++++|.++.+|. .+..+++|++|+|++|.+.. +..+..+.+|++|++++
T Consensus 14 ~~v~c~~~~l~-~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCS-SCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcC-cCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 56677776655 466543 2678888888888887654 67788888888888888876 46788888888888888
Q ss_pred CCCCccChh-hcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeec
Q 037947 613 SHIEQLPEE-IGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHI 691 (780)
Q Consensus 613 ~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~ 691 (780)
|.++.+|.. +..+++|++|++++ +.++.+++..+..+++|++|++++|.+....+ ..+..+++|+.|+++.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK-------GTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------TTTTTCTTCCEEECCS
T ss_pred CcCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcCCEECH-------HHHhCCCCCCEEEeCC
Confidence 888888775 46788888888888 67777777777888888888888875432211 2356677778888877
Q ss_pred cCC
Q 037947 692 LDA 694 (780)
Q Consensus 692 ~~~ 694 (780)
|.+
T Consensus 162 N~~ 164 (220)
T 2v9t_B 162 NPF 164 (220)
T ss_dssp SCE
T ss_pred CCc
Confidence 754
No 103
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.44 E-value=5.3e-14 Score=152.45 Aligned_cols=242 Identities=15% Similarity=0.113 Sum_probs=139.6
Q ss_pred CceEEEccCCCCccC-----CC-ccCCCCccEEEeccCc---cccccCchh------hcCCCCccEEEecCCCCCC----
Q 037947 512 DPIAISLPCRDIQEL-----PE-RLECPKLKLFFLFSKK---LSLVIPDLF------FEGVPSLQVLSLNGFHFPS---- 572 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~-----~~-~~~~~~L~~L~l~~~~---~~~~~~~~~------~~~l~~Lr~L~l~~~~~~~---- 572 (780)
.+++|.+.+|.+... +. ...+++|+.|++++|. +.+.+|..+ +..+++|++|+|++|.++.
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 467777777766542 11 2257777788777753 333445443 3567778888888777765
Q ss_pred -CCccccCCCCCCEEEccCccCCC--cc----ccccc---------CCCcEEEeecCCCC--ccC---hhhcCCCCCCEE
Q 037947 573 -LPSTLGCLINLQTLSFECCVLGD--VA----TVGAL---------KKLVILSFRNSHIE--QLP---EEIGQLTRLKLL 631 (780)
Q Consensus 573 -lp~~i~~l~~L~~L~L~~~~~~~--~~----~i~~l---------~~L~~L~l~~~~l~--~lp---~~i~~l~~L~~L 631 (780)
+|..+..+++|++|+|++|.+.. +. .+..+ ++|++|++++|.+. .+| ..+..+++|++|
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L 192 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTV 192 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEE
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEE
Confidence 56667777778888887777653 22 23333 77788888777765 344 456677778888
Q ss_pred ecCCCCCCcc-----cCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCCCC-----Cccc
Q 037947 632 DLSNCSKLKS-----IRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVM-----PREL 701 (780)
Q Consensus 632 ~l~~~~~l~~-----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~-----~~~~ 701 (780)
++++ +.++. +.+..+..+++|++|++++|.+.... .......+..+++|+.|+++.|.+... +..+
T Consensus 193 ~L~~-n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g---~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 193 KMVQ-NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG---SSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp ECCS-SCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH---HHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred ECcC-CCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH---HHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 8777 34441 22324667777788887777432100 011123456677777777777765443 3332
Q ss_pred ---cccCccEEEEEecCccc-----c---c-ccccccceeEeecCCCccch---hHHHHHhcccceeeccc
Q 037947 702 ---FSVGLERYKIFLGDVWS-----W---T-GKYETSRTLKLKLDNPMYLE---HGIKMLLRRTEDLHLDK 757 (780)
Q Consensus 702 ---~~~~L~~L~i~~~~~~~-----~---~-~~~~~l~~l~L~~~~~~~~~---~~~~~~l~~L~~L~l~~ 757 (780)
.+++|++|.+..+.... . + ..++.++.|.|..+...... ..+...+++++.+.+..
T Consensus 269 ~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhh
Confidence 15667777776554332 1 1 23455565555444332222 33444455555444433
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=9.4e-13 Score=130.28 Aligned_cols=148 Identities=17% Similarity=0.197 Sum_probs=114.0
Q ss_pred cEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCC--ccccCCCCCCEEEccCccCCC--cccccccCCCcEEEee
Q 037947 536 KLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP--STLGCLINLQTLSFECCVLGD--VATVGALKKLVILSFR 611 (780)
Q Consensus 536 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp--~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~ 611 (780)
+++++++|.+. .+|..+ ...+++|++++|.++.++ ..+..+++|++|+|++|.++. +..++.+.+|++|+++
T Consensus 14 ~~l~~s~n~l~-~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEeEeCCCCcc-cCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 57888888775 467644 345688999999888763 347888999999999988877 3468888999999999
Q ss_pred cCCCCccChh-hcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEee
Q 037947 612 NSHIEQLPEE-IGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMH 690 (780)
Q Consensus 612 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~ 690 (780)
+|.+..+|.. +..+++|++|++++ +.++.+++..+..+++|++|++++|.+....+ ..+..+++|+.|+++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-------GAFDTLHSLSTLNLL 161 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-------TTTTTCTTCCEEECC
T ss_pred CCccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCcCCEECH-------HHhcCCCCCCEEEec
Confidence 9988888764 77888999999988 67888877778888889999988885533222 456677888888888
Q ss_pred ccCCC
Q 037947 691 ILDAQ 695 (780)
Q Consensus 691 ~~~~~ 695 (780)
.|.+.
T Consensus 162 ~N~l~ 166 (220)
T 2v70_A 162 ANPFN 166 (220)
T ss_dssp SCCEE
T ss_pred CcCCc
Confidence 77644
No 105
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=8.2e-14 Score=147.93 Aligned_cols=242 Identities=16% Similarity=0.140 Sum_probs=170.2
Q ss_pred ceEEEccCCCCccCCCc-cCC--CCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCC--CCccccCCCCCCEEE
Q 037947 513 PIAISLPCRDIQELPER-LEC--PKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPS--LPSTLGCLINLQTLS 587 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~~-~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~--lp~~i~~l~~L~~L~ 587 (780)
.+++.+.++.+. +.. ..+ ++++.|.+++|.+.+..+. +..+++|++|++++|.++. +|..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 456666655443 111 133 7899999999988766555 3468999999999998873 777888999999999
Q ss_pred ccCccCCC--cccccccCCCcEEEeecC-CCC--ccChhhcCCCCCCEEecCCCCCCccc-CccccCCCc-ccceeeccC
Q 037947 588 FECCVLGD--VATVGALKKLVILSFRNS-HIE--QLPEEIGQLTRLKLLDLSNCSKLKSI-RPNVISNLP-RLEELYMGN 660 (780)
Q Consensus 588 L~~~~~~~--~~~i~~l~~L~~L~l~~~-~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~-~~~~l~~l~-~L~~L~l~~ 660 (780)
+++|.+.. +..++.+++|++|++++| .++ .+|..+..+++|++|++++|..++.. .+..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 99998875 677888999999999998 677 37888889999999999996466642 244577888 999999998
Q ss_pred CCCccccccCCccchhhhcCCCCCCEEEeeccC-CC-CCCccc-cccCccEEEEEecCcc--c---ccccccccceeEee
Q 037947 661 SFTHWEIEGQNNASLAELNQLSRLTTLEMHILD-AQ-VMPREL-FSVGLERYKIFLGDVW--S---WTGKYETSRTLKLK 732 (780)
Q Consensus 661 ~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~-~~-~~~~~~-~~~~L~~L~i~~~~~~--~---~~~~~~~l~~l~L~ 732 (780)
|... +. .......+.++++|+.|+++.|. +. ..+..+ .+++|++|++..+... . .+..++.++.|.+.
T Consensus 205 ~~~~--~~--~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 280 (336)
T 2ast_B 205 YRKN--LQ--KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280 (336)
T ss_dssp CGGG--SC--HHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred Cccc--CC--HHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence 8310 00 01112345678899999999887 33 334444 7789999999876421 1 35567777777776
Q ss_pred cCCCccchhHHHHHhcccceeecccccccccccc
Q 037947 733 LDNPMYLEHGIKMLLRRTEDLHLDKLNGFQNVLH 766 (780)
Q Consensus 733 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~ 766 (780)
.+ .....+..+..+|+.|++.+ +.+..+..
T Consensus 281 ~~---i~~~~~~~l~~~l~~L~l~~-n~l~~~~~ 310 (336)
T 2ast_B 281 GI---VPDGTLQLLKEALPHLQINC-SHFTTIAR 310 (336)
T ss_dssp TS---SCTTCHHHHHHHSTTSEESC-CCSCCTTC
T ss_pred Cc---cCHHHHHHHHhhCcceEEec-ccCccccC
Confidence 54 22333344434577777765 56655443
No 106
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.43 E-value=4.3e-14 Score=153.15 Aligned_cols=225 Identities=14% Similarity=0.087 Sum_probs=164.6
Q ss_pred CCCCccEEEeccCccccccCch---hhcCCCCccEEEecCCCCCC----CCccc-------cCCCCCCEEEccCccCCC-
Q 037947 531 ECPKLKLFFLFSKKLSLVIPDL---FFEGVPSLQVLSLNGFHFPS----LPSTL-------GCLINLQTLSFECCVLGD- 595 (780)
Q Consensus 531 ~~~~L~~L~l~~~~~~~~~~~~---~~~~l~~Lr~L~l~~~~~~~----lp~~i-------~~l~~L~~L~L~~~~~~~- 595 (780)
.+++|+.|++++|.+....+.. .+..+++|++|+|++|.+.. +|..+ ..+++|++|+|++|.+..
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 6789999999999887543332 25678999999999986653 34444 689999999999999876
Q ss_pred -----cccccccCCCcEEEeecCCCCc-----cChhhcCC---------CCCCEEecCCCCCCc--ccCc--cccCCCcc
Q 037947 596 -----VATVGALKKLVILSFRNSHIEQ-----LPEEIGQL---------TRLKLLDLSNCSKLK--SIRP--NVISNLPR 652 (780)
Q Consensus 596 -----~~~i~~l~~L~~L~l~~~~l~~-----lp~~i~~l---------~~L~~L~l~~~~~l~--~~~~--~~l~~l~~ 652 (780)
+..+..+++|++|++++|.+.. ++..+..+ ++|++|++++ +.++ .++. ..+..+++
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~l~~~~~ 188 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR-NRLENGSMKEWAKTFQSHRL 188 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS-SCCTGGGHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC-CCCCcHHHHHHHHHHHhCCC
Confidence 3578899999999999998863 44445555 8999999998 4554 2321 34667899
Q ss_pred cceeeccCCCCccccccCCccchh-hhcCCCCCCEEEeeccCC-----CCCCccc-cccCccEEEEEecCccc-------
Q 037947 653 LEELYMGNSFTHWEIEGQNNASLA-ELNQLSRLTTLEMHILDA-----QVMPREL-FSVGLERYKIFLGDVWS------- 718 (780)
Q Consensus 653 L~~L~l~~~~~~~~~~~~~~~~l~-~l~~L~~L~~L~l~~~~~-----~~~~~~~-~~~~L~~L~i~~~~~~~------- 718 (780)
|++|++++|.+... ....... .+.++++|+.|+++.|.+ ..+|..+ .+++|++|.+..+....
T Consensus 189 L~~L~L~~n~l~~~---g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 189 LHTVKMVQNGIRPE---GIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp CCEEECCSSCCCHH---HHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred cCEEECcCCCCCHh---HHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHH
Confidence 99999999854210 0011223 677899999999999987 4556655 77899999998766432
Q ss_pred -cc--ccccccceeEeecCCCcc-----chhHHHHHhcccceeeccccc
Q 037947 719 -WT--GKYETSRTLKLKLDNPMY-----LEHGIKMLLRRTEDLHLDKLN 759 (780)
Q Consensus 719 -~~--~~~~~l~~l~L~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~ 759 (780)
++ ..++.++.|.|+.|.... .+..+...+++|+.|++++++
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 22 236778888887766444 344444557999999999953
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=6.8e-13 Score=142.13 Aligned_cols=146 Identities=21% Similarity=0.256 Sum_probs=84.3
Q ss_pred EEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhc-CCCCccEEEecCCCCCCCC-ccccCCCCCCEEEccCcc
Q 037947 515 AISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFE-GVPSLQVLSLNGFHFPSLP-STLGCLINLQTLSFECCV 592 (780)
Q Consensus 515 ~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~ 592 (780)
.+...++.+..+|... .+.++.|++++|.+.. ++...+. ++++|++|+|++|.++.+| ..+..+++|++|+|++|.
T Consensus 22 ~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSSCCSSCCSSC-CTTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccC-CCCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 4555555566555432 2345666666666553 3333344 5666666666666666554 346666666666666666
Q ss_pred CCC--cccccccCCCcEEEeecCCCCcc-ChhhcCCCCCCEEecCCCCCCcccCcccc---CCCcccceeeccCCCC
Q 037947 593 LGD--VATVGALKKLVILSFRNSHIEQL-PEEIGQLTRLKLLDLSNCSKLKSIRPNVI---SNLPRLEELYMGNSFT 663 (780)
Q Consensus 593 ~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~l---~~l~~L~~L~l~~~~~ 663 (780)
+.. +..+..+.+|++|+|++|.+..+ |..+..+++|++|++++ +.++.+|+..+ ..+++|+.|++++|.+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 655 22356666666666666666655 34566666666666666 55666655433 4466666666666643
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.42 E-value=1.8e-12 Score=145.70 Aligned_cols=174 Identities=20% Similarity=0.199 Sum_probs=138.2
Q ss_pred CCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCCcccccccCCCcEEEeec
Q 037947 533 PKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGDVATVGALKKLVILSFRN 612 (780)
Q Consensus 533 ~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~ 612 (780)
.+++.|++++|.+.+ +|..+ +++|++|+|++|.++.+| ..+++|++|++++|.++.++.+++ +|++|++++
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCC
Confidence 489999999999875 88765 378999999999999998 558999999999999988544655 999999999
Q ss_pred CCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeecc
Q 037947 613 SHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHIL 692 (780)
Q Consensus 613 ~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~ 692 (780)
|.++.+|. .+++|++|++++ +.++.+|. .+++|++|++++|.+.. ++ . +. ++|+.|+++.|
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~-N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp----~----l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADN-NQLTMLPE----LPTSLEVLSVRNNQLTF-LP----E----LP--ESLEALDVSTN 190 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCS-SCCSCCCC----CCTTCCEEECCSSCCSC-CC----C----CC--TTCCEEECCSS
T ss_pred CcCCCCCC---cCccccEEeCCC-CccCcCCC----cCCCcCEEECCCCCCCC-cc----h----hh--CCCCEEECcCC
Confidence 99999998 789999999999 67888764 57899999999996532 22 1 33 78999999999
Q ss_pred CCCCCCccccccCc-------cEEEEEecCcc---cccccccccceeEeecCCC
Q 037947 693 DAQVMPRELFSVGL-------ERYKIFLGDVW---SWTGKYETSRTLKLKLDNP 736 (780)
Q Consensus 693 ~~~~~~~~~~~~~L-------~~L~i~~~~~~---~~~~~~~~l~~l~L~~~~~ 736 (780)
.+..+|. +. .+| +.|++..+... ..+..++.++.|.|+.|..
T Consensus 191 ~L~~lp~-~~-~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 191 LLESLPA-VP-VRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CCSSCCC-CC---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSC
T ss_pred CCCchhh-HH-HhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcC
Confidence 9999988 52 267 88888776543 3344567777777766553
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.42 E-value=1.1e-12 Score=139.81 Aligned_cols=191 Identities=15% Similarity=0.161 Sum_probs=110.0
Q ss_pred CceEEEccCCCCccCCCc--cCCCCccEEEeccCccccccCchhhcCCCCcc-EEEecCCCCCCC-CccccCCCCCCEEE
Q 037947 512 DPIAISLPCRDIQELPER--LECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQ-VLSLNGFHFPSL-PSTLGCLINLQTLS 587 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr-~L~l~~~~~~~l-p~~i~~l~~L~~L~ 587 (780)
.+++|.+++|.+..++.. ..+++|+.|++++|.+...+|...|.+++.+. .+.+++|.++.+ |..+..+++|++|+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~ 110 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 110 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence 466677777777666642 36667777777777665556666666666554 345555666655 34556667777777
Q ss_pred ccCccCCCcc--cccccCCCcEEEeec-CCCCccChh-hcCC-CCCCEEecCCCCCCcccCccccCCCcccceeeccCCC
Q 037947 588 FECCVLGDVA--TVGALKKLVILSFRN-SHIEQLPEE-IGQL-TRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSF 662 (780)
Q Consensus 588 L~~~~~~~~~--~i~~l~~L~~L~l~~-~~l~~lp~~-i~~l-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 662 (780)
+++|.+..++ ......++..|++.+ +.+..+|.. +..+ ..|+.|++++ +.++.+++. +...++|++|++.++.
T Consensus 111 l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~-~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNS-AFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTT-SSTTEEEEEEECTTCT
T ss_pred ccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChh-hccccchhHHhhccCC
Confidence 7777665532 233444556666654 356666542 3333 3566677766 566666554 3455566666665432
Q ss_pred CccccccCCccchhhhcCCCCCCEEEeeccCCCCCCccccccCccEEEE
Q 037947 663 THWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPRELFSVGLERYKI 711 (780)
Q Consensus 663 ~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~~~~~L~~L~i 711 (780)
....++ -..+..+++|+.|+++.|.+..+|... +.+|++|.+
T Consensus 189 ~l~~i~------~~~f~~l~~L~~LdLs~N~l~~lp~~~-~~~L~~L~~ 230 (350)
T 4ay9_X 189 NLEELP------NDVFHGASGPVILDISRTRIHSLPSYG-LENLKKLRA 230 (350)
T ss_dssp TCCCCC------TTTTTTEECCSEEECTTSCCCCCCSSS-CTTCCEEEC
T ss_pred cccCCC------HHHhccCcccchhhcCCCCcCccChhh-hccchHhhh
Confidence 211121 022455666777777777766666653 455665554
No 110
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.42 E-value=1.5e-12 Score=132.61 Aligned_cols=143 Identities=22% Similarity=0.274 Sum_probs=127.7
Q ss_pred CceEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCc
Q 037947 512 DPIAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECC 591 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 591 (780)
.++.|.+.++.+..++....+++|+.|++++|.+.. ++. +..++.|+.|++++|.++.+|.... .+|++|++++|
T Consensus 42 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~-~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N 116 (263)
T 1xeu_A 42 GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISD-LSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNN 116 (263)
T ss_dssp TCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCC-CGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSS
T ss_pred cCcEEECcCCCcccchHHhhCCCCCEEECCCCccCC-Chh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEccCC
Confidence 588999999999999876789999999999999874 444 6889999999999999998876444 99999999999
Q ss_pred cCCCcccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCC
Q 037947 592 VLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFT 663 (780)
Q Consensus 592 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 663 (780)
.++.++.++.+.+|++|++++|.++.+| .+..+++|++|++++ +.++.. ..+..+++|+.|++++|..
T Consensus 117 ~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~-N~i~~~--~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 117 ELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHG-NEITNT--GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp CCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTT-SCCCBC--TTSTTCCCCCEEEEEEEEE
T ss_pred ccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCC-CcCcch--HHhccCCCCCEEeCCCCcc
Confidence 9999888999999999999999999997 699999999999999 677777 3488999999999998854
No 111
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=8.9e-13 Score=124.51 Aligned_cols=139 Identities=24% Similarity=0.216 Sum_probs=86.5
Q ss_pred CCCccEEEecCCCCC--CCCccccCCCCCCEEEccCccCCCcccccccCCCcEEEeecCCCCc-cChhhcCCCCCCEEec
Q 037947 557 VPSLQVLSLNGFHFP--SLPSTLGCLINLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQ-LPEEIGQLTRLKLLDL 633 (780)
Q Consensus 557 l~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~l 633 (780)
.+.|+.|++++|.++ .+|..+..+++|++|++++|.+..+..++.+++|++|++++|.+.. +|..+..+++|++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence 356666777766666 5666666677777777777766666666667777777777776666 5665566777777777
Q ss_pred CCCCCCcccCc-cccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCCCCCcc
Q 037947 634 SNCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPRE 700 (780)
Q Consensus 634 ~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~ 700 (780)
++ +.++.++. ..++.+++|++|++++|.+.. ........+..+++|+.|++..|....+|..
T Consensus 103 s~-N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~----~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 103 SG-NKLKDISTLEPLKKLECLKSLDLFNCEVTN----LNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp BS-SSCCSSGGGGGGSSCSCCCEEECCSSGGGT----STTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred cC-CccCcchhHHHHhcCCCCCEEEeeCCcCcc----hHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 76 45565532 446667777777777664321 0000112456667777777777766666554
No 112
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.41 E-value=2.1e-12 Score=149.60 Aligned_cols=175 Identities=22% Similarity=0.261 Sum_probs=135.0
Q ss_pred cCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCc-cccCCCCCCEEEccCccCCC-c
Q 037947 519 PCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGCLINLQTLSFECCVLGD-V 596 (780)
Q Consensus 519 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~-~ 596 (780)
++..+..+|... -++++.|++++|.+. .+|+..|.++++|++|+|++|.++.+|+ .+.+|++|++|+|++|.++. +
T Consensus 39 ~~~~l~~vP~~l-p~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 39 MELNFYKIPDNL-PFSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp TTSCCSSCCSSS-CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCCcCccCCCC-CcCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 344566777533 247999999999987 5666667899999999999999998854 68999999999999999988 3
Q ss_pred -ccccccCCCcEEEeecCCCCccCh-hhcCCCCCCEEecCCCCCCccc-CccccCCCcccceeeccCCCCccccccCCcc
Q 037947 597 -ATVGALKKLVILSFRNSHIEQLPE-EIGQLTRLKLLDLSNCSKLKSI-RPNVISNLPRLEELYMGNSFTHWEIEGQNNA 673 (780)
Q Consensus 597 -~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 673 (780)
..++++.+|++|++++|.+..+|. .++.+++|++|++++ +.+..+ .|..++.+++|++|++++|.+... ...
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~----~~~ 191 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI----YCT 191 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSSCCCEE----CGG
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeecccc-CccccCCCchhhccchhhhhhcccCcccccc----ccc
Confidence 458999999999999999999986 489999999999999 566654 356678999999999999865332 223
Q ss_pred chhhhcCCCC-CCEEEeeccCCCCCCcc
Q 037947 674 SLAELNQLSR-LTTLEMHILDAQVMPRE 700 (780)
Q Consensus 674 ~l~~l~~L~~-L~~L~l~~~~~~~~~~~ 700 (780)
.+..+.++.. +..++++.|.+..++..
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~ 219 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPG 219 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred cccchhhhhhhhhhhhcccCcccccCcc
Confidence 3444444432 33566666665554443
No 113
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.39 E-value=3.5e-14 Score=157.89 Aligned_cols=178 Identities=19% Similarity=0.169 Sum_probs=81.6
Q ss_pred CCCCEEEccCccCCC------cccccccCCCcEEEeecCCCCcc-----Chhhc-CCCCCCEEecCCCCCCcccC----c
Q 037947 581 INLQTLSFECCVLGD------VATVGALKKLVILSFRNSHIEQL-----PEEIG-QLTRLKLLDLSNCSKLKSIR----P 644 (780)
Q Consensus 581 ~~L~~L~L~~~~~~~------~~~i~~l~~L~~L~l~~~~l~~l-----p~~i~-~l~~L~~L~l~~~~~l~~~~----~ 644 (780)
++|++|++++|.++. +..+..+++|++|++++|.+... +..+. .+++|++|++++| .++... +
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~ 220 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLC 220 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHH
Confidence 345555555554443 12334445555555555544321 11111 2345555555552 333310 2
Q ss_pred cccCCCcccceeeccCCCCccccccCCccch-hh-hcCCCCCCEEEeeccCCCC-----CCccc-cccCccEEEEEecCc
Q 037947 645 NVISNLPRLEELYMGNSFTHWEIEGQNNASL-AE-LNQLSRLTTLEMHILDAQV-----MPREL-FSVGLERYKIFLGDV 716 (780)
Q Consensus 645 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l-~~-l~~L~~L~~L~l~~~~~~~-----~~~~~-~~~~L~~L~i~~~~~ 716 (780)
..+..+++|++|++++|.+... ....+ .. ...+++|+.|+++.|.+.. ++..+ .+++|++|++..+..
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~----~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDV----GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHH----HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHHhCCCccEEeccCCcCChH----HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 2344556666666665532110 00000 11 1245667777777666554 33333 466777777765443
Q ss_pred cc-----c----cccccccceeEeecCCCccch----hHHHHHhcccceeecccccccccc
Q 037947 717 WS-----W----TGKYETSRTLKLKLDNPMYLE----HGIKMLLRRTEDLHLDKLNGFQNV 764 (780)
Q Consensus 717 ~~-----~----~~~~~~l~~l~L~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~l~~~ 764 (780)
.. + ....+.++.+.+..+...... ......+++|+.|+++++ .+...
T Consensus 297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~ 356 (461)
T 1z7x_W 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDA 356 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHH
T ss_pred chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC-ccccc
Confidence 21 1 112245666666544422211 111122477888888774 44443
No 114
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.37 E-value=5.6e-14 Score=156.27 Aligned_cols=148 Identities=19% Similarity=0.216 Sum_probs=74.3
Q ss_pred ceEEEccCCCCcc-----CCCc-cCCCCccEEEeccCccccccCch----hhcCCCCccEEEecCCCCCC-----CCccc
Q 037947 513 PIAISLPCRDIQE-----LPER-LECPKLKLFFLFSKKLSLVIPDL----FFEGVPSLQVLSLNGFHFPS-----LPSTL 577 (780)
Q Consensus 513 ~~~l~l~~~~~~~-----~~~~-~~~~~L~~L~l~~~~~~~~~~~~----~~~~l~~Lr~L~l~~~~~~~-----lp~~i 577 (780)
.++|.+.+|.+.. ++.. ..+++|+.|++++|.+....+.. ++...+.|+.|++++|.++. ++..+
T Consensus 87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l 166 (461)
T 1z7x_W 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL 166 (461)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence 5666666665542 2222 25666666666666654322221 12224456666666666552 23444
Q ss_pred cCCCCCCEEEccCccCCC--ccccc-----ccCCCcEEEeecCCCCc-----cChhhcCCCCCCEEecCCCCCCcccC--
Q 037947 578 GCLINLQTLSFECCVLGD--VATVG-----ALKKLVILSFRNSHIEQ-----LPEEIGQLTRLKLLDLSNCSKLKSIR-- 643 (780)
Q Consensus 578 ~~l~~L~~L~L~~~~~~~--~~~i~-----~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~~~-- 643 (780)
..+++|++|++++|.+.. +..+. .+.+|++|++++|.+.. +|..+..+++|++|++++| .++...
T Consensus 167 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~ 245 (461)
T 1z7x_W 167 RAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMA 245 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHH
T ss_pred hhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHH
Confidence 555666666666665543 22222 23456666666665554 4555555566666666552 333221
Q ss_pred ---ccccCCCcccceeeccCC
Q 037947 644 ---PNVISNLPRLEELYMGNS 661 (780)
Q Consensus 644 ---~~~l~~l~~L~~L~l~~~ 661 (780)
+.....+++|++|++++|
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n 266 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWEC 266 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHHHhcCCCCceEEECcCC
Confidence 111223455555555555
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=4.9e-12 Score=125.96 Aligned_cols=151 Identities=23% Similarity=0.266 Sum_probs=109.5
Q ss_pred ccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC-CccccCCCCCCEEEccCccCCCc--ccccccCCCcEEEee
Q 037947 535 LKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGCLINLQTLSFECCVLGDV--ATVGALKKLVILSFR 611 (780)
Q Consensus 535 L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~~--~~i~~l~~L~~L~l~ 611 (780)
...++++++.+. .+|..+ .+.|++|+|++|.++.+ |..+..+++|++|+|++|.+..+ ..+..+.+|++|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 456777666654 566544 37788888888888866 56778888888888888888773 346788888888888
Q ss_pred cCCCCccChh-hcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEee
Q 037947 612 NSHIEQLPEE-IGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMH 690 (780)
Q Consensus 612 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~ 690 (780)
+|.++.+|.. +..+++|++|++++ +.++.+|.. +..+++|++|++++|.+..... ..+..+++|+.|++.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRG-IERLTHLTHLALDQNQLKSIPH-------GAFDRLSSLTHAYLF 167 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTT-GGGCTTCSEEECCSSCCCCCCT-------TTTTTCTTCCEEECT
T ss_pred CCcCCccChhHhCcchhhCeEeccC-CcccccCcc-cccCCCCCEEECCCCcCCccCH-------HHHhCCCCCCEEEee
Confidence 8888888765 57788888888887 677777544 6788888888888875432111 346677788888888
Q ss_pred ccCCCCCC
Q 037947 691 ILDAQVMP 698 (780)
Q Consensus 691 ~~~~~~~~ 698 (780)
.|.+..-+
T Consensus 168 ~N~~~c~c 175 (229)
T 3e6j_A 168 GNPWDCEC 175 (229)
T ss_dssp TSCBCTTB
T ss_pred CCCccCCc
Confidence 77655433
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=1.6e-12 Score=139.23 Aligned_cols=151 Identities=25% Similarity=0.345 Sum_probs=130.3
Q ss_pred CceEEEccCCCCccCCCcc---CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCc-cccCCCCCCEEE
Q 037947 512 DPIAISLPCRDIQELPERL---ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGCLINLQTLS 587 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~ 587 (780)
.++.|.+++|.+..++... .+++|+.|++++|.+.. ++...|..++.|++|+|++|.++.+|. .+..+.+|++|+
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-cChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 4789999999999887542 78999999999999874 555567899999999999999998754 688999999999
Q ss_pred ccCccCCC--cccccccCCCcEEEeecCCCCccChhh----cCCCCCCEEecCCCCCCcccCccccCCCcc--cceeecc
Q 037947 588 FECCVLGD--VATVGALKKLVILSFRNSHIEQLPEEI----GQLTRLKLLDLSNCSKLKSIRPNVISNLPR--LEELYMG 659 (780)
Q Consensus 588 L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i----~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~--L~~L~l~ 659 (780)
|++|.+.. +..+..+.+|++|+|++|.+..+|..+ ..+++|++|++++ +.++.+++..+..+++ |+.|++.
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~ 197 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLH 197 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceEEec
Confidence 99999987 567999999999999999999999876 6799999999999 7899998777888877 4889999
Q ss_pred CCCCc
Q 037947 660 NSFTH 664 (780)
Q Consensus 660 ~~~~~ 664 (780)
+|...
T Consensus 198 ~N~~~ 202 (361)
T 2xot_A 198 NNPLE 202 (361)
T ss_dssp SSCEE
T ss_pred CCCcc
Confidence 98654
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.37 E-value=1.3e-12 Score=123.28 Aligned_cols=129 Identities=23% Similarity=0.220 Sum_probs=101.0
Q ss_pred CCCccEEEeccCccc-cccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCC-cc-cccccCCCcEE
Q 037947 532 CPKLKLFFLFSKKLS-LVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGD-VA-TVGALKKLVIL 608 (780)
Q Consensus 532 ~~~L~~L~l~~~~~~-~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~-~i~~l~~L~~L 608 (780)
.++++.|++++|.+. +.+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. ++ .++++++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 367788888888776 456654 46788888888888888877 678888888888888888876 43 45568888888
Q ss_pred EeecCCCCccC--hhhcCCCCCCEEecCCCCCCcccCc---cccCCCcccceeeccCCCC
Q 037947 609 SFRNSHIEQLP--EEIGQLTRLKLLDLSNCSKLKSIRP---NVISNLPRLEELYMGNSFT 663 (780)
Q Consensus 609 ~l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l~~~~~ 663 (780)
++++|.++.+| ..+..+++|++|++++ +.++..++ ..+..+++|++|++++|..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 88888888876 6788888888888888 56777765 4578888888888887743
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=7.1e-15 Score=166.25 Aligned_cols=189 Identities=17% Similarity=0.190 Sum_probs=125.5
Q ss_pred CceEEEccCCCCccCCCcc-CCCCccEEEeccCc-------------cccccCchhhcCCCCccEEE-ecCCCCCCCCc-
Q 037947 512 DPIAISLPCRDIQELPERL-ECPKLKLFFLFSKK-------------LSLVIPDLFFEGVPSLQVLS-LNGFHFPSLPS- 575 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~-------------~~~~~~~~~~~~l~~Lr~L~-l~~~~~~~lp~- 575 (780)
..++|.++.|.+..+|... .|++|+.|++.+|. ..+..| ..+..++.|+.|+ ++.+.+..++.
T Consensus 350 ~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~-~~l~~l~~L~~L~~l~~n~~~~L~~l 428 (567)
T 1dce_A 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK-ETLQYFSTLKAVDPMRAAYLDDLRSK 428 (567)
T ss_dssp TSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH-HHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCH-HHHHHHHhcccCcchhhcccchhhhh
Confidence 3455666666666666544 56667777665443 222222 2335556666666 34332222111
Q ss_pred -----cccC--CCCCCEEEccCccCCCcccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccC
Q 037947 576 -----TLGC--LINLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVIS 648 (780)
Q Consensus 576 -----~i~~--l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~ 648 (780)
.+.. ...|++|+|++|.++.++.++.+.+|++|++++|.++.+|..++.+++|++|++++ +.++.+| .++
T Consensus 429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp--~l~ 505 (567)
T 1dce_A 429 FLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD--GVA 505 (567)
T ss_dssp HHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG--GGT
T ss_pred hhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc--ccC
Confidence 1111 12588888888888886668888888888888888888888888888888888888 6777774 478
Q ss_pred CCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCCCCCccc-----cccCccEEE
Q 037947 649 NLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMPREL-----FSVGLERYK 710 (780)
Q Consensus 649 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~ 710 (780)
.+++|++|++++|.+.... ....+..+++|+.|+++.|.+..+|+.. .+++|+.|+
T Consensus 506 ~l~~L~~L~Ls~N~l~~~~------~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQQSA------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TCSSCCEEECCSSCCCSSS------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCcEEECCCCCCCCCC------CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 8888888888888543221 0256778888888888888887777654 367777764
No 119
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.36 E-value=1.2e-11 Score=121.11 Aligned_cols=148 Identities=21% Similarity=0.286 Sum_probs=108.2
Q ss_pred cEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCc-cccCCCCCCEEEccCccCCCc--ccccccCCCcEEEeec
Q 037947 536 KLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPS-TLGCLINLQTLSFECCVLGDV--ATVGALKKLVILSFRN 612 (780)
Q Consensus 536 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~--~~i~~l~~L~~L~l~~ 612 (780)
+.+.+.++... .+|..+ .+.|++|++++|.++.+|. .+..+++|++|++++|.+..+ ..+..+.+|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 45555555544 455433 4678889999888887765 467888899999988888773 3367888899999988
Q ss_pred CCCCccChh-hcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeec
Q 037947 613 SHIEQLPEE-IGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHI 691 (780)
Q Consensus 613 ~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~ 691 (780)
|.+..+|.. +..+++|++|++++ +.++.+++..+..+++|++|++++|.+..... ..+..+++|+.|+++.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~-------~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNT-NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPD-------GVFDRLTSLQYIWLHD 157 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------TTTTTCTTCCEEECCS
T ss_pred CcCCccCHhHhcCccCCCEEEcCC-CcCcccCHhHhccCCcCCEEECCCCccceeCH-------HHhccCCCccEEEecC
Confidence 888888765 57888889998888 67788877767888888888888875432111 2356677888888887
Q ss_pred cCCC
Q 037947 692 LDAQ 695 (780)
Q Consensus 692 ~~~~ 695 (780)
|...
T Consensus 158 N~~~ 161 (208)
T 2o6s_A 158 NPWD 161 (208)
T ss_dssp CCBC
T ss_pred CCee
Confidence 7543
No 120
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.36 E-value=5.2e-12 Score=134.65 Aligned_cols=230 Identities=17% Similarity=0.143 Sum_probs=136.8
Q ss_pred EEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCC-CCCc-cccCCCCCCE-EEccCcc
Q 037947 516 ISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFP-SLPS-TLGCLINLQT-LSFECCV 592 (780)
Q Consensus 516 l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~-~lp~-~i~~l~~L~~-L~L~~~~ 592 (780)
+..+++.+.++|... .++++.|++++|.+. .+|...|.++++|++|+|++|.+. .+|. .+.++++|.. +.+.+|.
T Consensus 14 v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 14 FLCQESKVTEIPSDL-PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp EEEESTTCCSCCTTC-CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred EEecCCCCCccCcCc-CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 444555666666533 356777888877775 566666677778888888877764 3443 4566777664 4455566
Q ss_pred CCC--cccccccCCCcEEEeecCCCCccCh-hhcCCCCCCEEecCCCCCCcccCccccCCCc-ccceeeccCCCCccccc
Q 037947 593 LGD--VATVGALKKLVILSFRNSHIEQLPE-EIGQLTRLKLLDLSNCSKLKSIRPNVISNLP-RLEELYMGNSFTHWEIE 668 (780)
Q Consensus 593 ~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~ 668 (780)
+.. +..+..+.+|++|++++|.+..+|. .+....++..|++.+++.+..+++..+..+. .++.|++++|.+.. ++
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~ 170 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IH 170 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-EC
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CC
Confidence 665 3456777788888888777777664 3345556777777666677777665555553 57777777775421 11
Q ss_pred cCCccchhhhcCCCCCCEEEee-ccCCCCCCccc--cccCccEEEEEecCccccc-ccccccceeEeecCCCcc-chhHH
Q 037947 669 GQNNASLAELNQLSRLTTLEMH-ILDAQVMPREL--FSVGLERYKIFLGDVWSWT-GKYETSRTLKLKLDNPMY-LEHGI 743 (780)
Q Consensus 669 ~~~~~~l~~l~~L~~L~~L~l~-~~~~~~~~~~~--~~~~L~~L~i~~~~~~~~~-~~~~~l~~l~L~~~~~~~-~~~~~ 743 (780)
.......+|+.|.+. +|.+..+|... .+++|+.|+++.+...... ..+..++.|++..+.... +|.
T Consensus 171 -------~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP~-- 241 (350)
T 4ay9_X 171 -------NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT-- 241 (350)
T ss_dssp -------TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCCC--
T ss_pred -------hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCCC--
Confidence 122233456677775 46677777654 6677777777665543321 224444444432222222 221
Q ss_pred HHHhcccceeeccc
Q 037947 744 KMLLRRTEDLHLDK 757 (780)
Q Consensus 744 ~~~l~~L~~L~l~~ 757 (780)
...|++|+.+.+.+
T Consensus 242 l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 242 LEKLVALMEASLTY 255 (350)
T ss_dssp TTTCCSCCEEECSC
T ss_pred chhCcChhhCcCCC
Confidence 12356666666643
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=1.2e-12 Score=120.95 Aligned_cols=123 Identities=23% Similarity=0.277 Sum_probs=61.4
Q ss_pred CCccEEEeccCccc-cccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCC-c-ccccccCCCcEEE
Q 037947 533 PKLKLFFLFSKKLS-LVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGD-V-ATVGALKKLVILS 609 (780)
Q Consensus 533 ~~L~~L~l~~~~~~-~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~-~~i~~l~~L~~L~ 609 (780)
++++.|++++|.+. +.+|. .+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. + ..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555544 33443 234455555555555555544 445555555555555555544 2 2233455555555
Q ss_pred eecCCCCccC--hhhcCCCCCCEEecCCCCCCcccCc---cccCCCcccceeec
Q 037947 610 FRNSHIEQLP--EEIGQLTRLKLLDLSNCSKLKSIRP---NVISNLPRLEELYM 658 (780)
Q Consensus 610 l~~~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~~~~---~~l~~l~~L~~L~l 658 (780)
+++|.++.+| ..++.+++|++|++++ +.++..++ ..++.+++|+.|++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFN-CEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTT-CGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcC-CcccchHHHHHHHHHHCCCcccccC
Confidence 5555555543 4455555555555555 34444433 23444555555544
No 122
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.33 E-value=2.7e-11 Score=130.95 Aligned_cols=287 Identities=13% Similarity=0.076 Sum_probs=174.0
Q ss_pred cccCCchHHHHHHHHHHc----cCCccEEEEEcCCCChHHHHHHHHHHHHhcc----CC--CCeEEEEEEccCC-CHHHH
Q 037947 151 EQFESRMPTFQDIMEALK----DDNINVIGIYGIGGVGKTTLVKQVARRVMED----KL--FDEVVMVVVSQKP-DYKAI 219 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~--F~~~~wv~vs~~~-~~~~~ 219 (780)
..++||+++++++.+++. ....+.+.|+|++|+||||+|+.+++..... .. ....+|+++.... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 679999999999987775 3446789999999999999999999876432 11 2356788887777 88889
Q ss_pred HHHHHHHc-CCCcCC-CCCHHHHHHHHHHHhccCcEEEEEeCCCCcccc--ccc-cCCcccccccccCCCCCcEEEEEec
Q 037947 220 QNEIAGAL-GLFLGE-HEDVSERAHLLRQRLKASRVLVILDDVWNRLDL--DAV-GIPYKNYQNEIKDDRRRCAMLLTSR 294 (780)
Q Consensus 220 ~~~i~~~l-~~~~~~-~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~--~~l-~~~~~~~~~~l~~~~~~s~iivTtr 294 (780)
+..++.++ +..... ..+.......+.+.+..++.+|||||++....- ... ...+ .....+..||+||+
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l-------~~~~~~~~iI~~t~ 172 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQL-------LRSDANISVIMISN 172 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHH-------HTSSSCEEEEEECS
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHH-------hcCCcceEEEEEEC
Confidence 99998887 322211 122456677788888877779999999765321 111 1111 11116778999998
Q ss_pred chhH----HhhhcCC-cceEEcCCCChHHHHHHHHHhhCC-CCCCCChhHHHHHHHHHhC---CChH-HHHHHHHHH--h
Q 037947 295 RKDL----LYNEMNS-QKNFLINVLSDQEAVQLFEKMSGV-FEGPLDFQNLAIKIARECG---GLPV-AITTVATAL--R 362 (780)
Q Consensus 295 ~~~v----~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~---GlPL-ai~~~~~~L--~ 362 (780)
.... ....... ...+++++++.++..+++...+.. .....--.+..+.|++.|+ |.|. |+..+-.+. .
T Consensus 173 ~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 173 DINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp STTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred CCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 7532 1111111 238999999999999999987531 1111222366788888888 9887 433333332 2
Q ss_pred ---CC-ChhHHHHHHHHHhcCCCCCCCCchhhhhccccccccccCchhHHHHHHhhcccCCCCCcChhHHHHHHhccCcC
Q 037947 363 ---NK-SLFVWKDALLQLRSSNHRDISGLDSTVYSSVKLSYNFLKSLEAQSLFLLCSLLNDGSRIPIDDLLRCAMGLDLF 438 (780)
Q Consensus 363 ---~~-~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~i~~~~Li~~W~aeg~i 438 (780)
.. +.+.+..++..... ..+..++..|+.+ .+..+..++....+-.+. +.....--..| +
T Consensus 253 ~~~~~i~~~~v~~~~~~~~~--------------~~~~~~~~~l~~~-~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~ 315 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVDYEQ--------------ERLIEAVKALPFH-YKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q 315 (384)
T ss_dssp TSSSCCCHHHHHHHHHHHHH--------------HHHHHHHHSSCHH-HHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C
T ss_pred cCCCccCHHHHHHHHHHHhc--------------chHHHHHHcCCHH-HHHHHHHHHHhcccChHH-HHHHHHHHHcC-C
Confidence 12 66677776665321 2244456677775 555555455411100110 01111111112 1
Q ss_pred CCcccHHHHHHHHHHHHHHHHhhccccc
Q 037947 439 SDVFSLEEARSRMHHLIDDLQASCLLLD 466 (780)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 466 (780)
...+ ...+.++++.|...++++.
T Consensus 316 -~~~~----~~~~~~~l~~L~~~gli~~ 338 (384)
T 2qby_B 316 -KPLS----YRRFSDIISELDMFGIVKI 338 (384)
T ss_dssp -CCCC----HHHHHHHHHHHHHTTSEEE
T ss_pred -CCCC----HHHHHHHHHHHHhCCCEEE
Confidence 1111 2345567888999999864
No 123
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.32 E-value=1.8e-12 Score=112.09 Aligned_cols=77 Identities=16% Similarity=0.137 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHHHHHHH
Q 037947 8 VSAVAEKLVGPIRRKISYVSHHQSYVEELSQVLTRLKYEKEDVRSAVDYAMRKG-EEVYEDVKCWLSHVDRFTENVEAIL 86 (780)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~-~~~~~~~~~Wl~~~~~~~~d~ed~l 86 (780)
++.+++++.+.+.+ ++..+.++++++++|+++|++|+++|.+|+.+. ...+++++.|+++||+++||+|||+
T Consensus 3 v~~ll~KL~~ll~~-------E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~i 75 (115)
T 3qfl_A 3 ISNLIPKLGELLTE-------EFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVV 75 (115)
T ss_dssp TCSHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555565554 455688999999999999999999999999873 2358999999999999999999999
Q ss_pred hhhhh
Q 037947 87 ADEGE 91 (780)
Q Consensus 87 d~~~~ 91 (780)
|+|..
T Consensus 76 D~f~~ 80 (115)
T 3qfl_A 76 DKFLV 80 (115)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99853
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.32 E-value=3.2e-12 Score=149.14 Aligned_cols=150 Identities=18% Similarity=0.200 Sum_probs=94.5
Q ss_pred CceEEEccCCCCccCCCcc-CCCCccEEEe-----ccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCE
Q 037947 512 DPIAISLPCRDIQELPERL-ECPKLKLFFL-----FSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQT 585 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~~~-~~~~L~~L~l-----~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~ 585 (780)
.++++++..+.+...+... ...+|+.+.+ ..|.+ .++...+..++.|++|+|++|.+..+|..++.+++|++
T Consensus 174 ~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 174 LTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRM--VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred ccceEEeeCCCCCcchhhHhhcCccCcccccCccccccce--ecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 3677777777666554322 2333333332 22322 24555677889999999999999888888889999999
Q ss_pred EEccCccCCC-cccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCc
Q 037947 586 LSFECCVLGD-VATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTH 664 (780)
Q Consensus 586 L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~ 664 (780)
|+|++|.+.. |..+++|.+|++|+|++|.++.+|..++.|++|++|+|++ +.++.+|.. ++.|++|++|++++|.+.
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~lp~~-~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFD-NMVTTLPWE-FGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCS-SCCCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCC-CCCCccChh-hhcCCCccEEeCCCCccC
Confidence 9999998887 6678999999999999999999999999999999999998 677888655 889999999999988664
Q ss_pred c
Q 037947 665 W 665 (780)
Q Consensus 665 ~ 665 (780)
.
T Consensus 330 ~ 330 (727)
T 4b8c_D 330 K 330 (727)
T ss_dssp S
T ss_pred C
Confidence 3
No 125
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.31 E-value=6e-11 Score=128.34 Aligned_cols=292 Identities=15% Similarity=0.131 Sum_probs=175.5
Q ss_pred ccccCCchHHHHHHHHHHc----cCCccEEEEEcCCCChHHHHHHHHHHHHhcc----CCCCeEEEEEEccCCCHHHHHH
Q 037947 150 YEQFESRMPTFQDIMEALK----DDNINVIGIYGIGGVGKTTLVKQVARRVMED----KLFDEVVMVVVSQKPDYKAIQN 221 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~~~ 221 (780)
+..++||+++++.+.+++. ....+.+.|+|++|+||||+|+.+++..... ..-...+|+++....+...+..
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHH
Confidence 3678999999999999885 3456789999999999999999999876432 1112467788888888999999
Q ss_pred HHHHHcCCCcCCCC-CHHHHHHHHHHHhc--cCcEEEEEeCCCCcccc----ccccCCcccccccccCC--CCCcEEEEE
Q 037947 222 EIAGALGLFLGEHE-DVSERAHLLRQRLK--ASRVLVILDDVWNRLDL----DAVGIPYKNYQNEIKDD--RRRCAMLLT 292 (780)
Q Consensus 222 ~i~~~l~~~~~~~~-~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~~----~~l~~~~~~~~~~l~~~--~~~s~iivT 292 (780)
.++.+++....... +..+....+.+.+. +++.+|||||++..... +.+...+ ...... ..+..+|+|
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~----~~~~~~~~~~~~~~I~~ 173 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRIT----RINQELGDRVWVSLVGI 173 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHH----HGGGCC-----CEEEEE
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHh----hchhhcCCCceEEEEEE
Confidence 99999976543322 25556667777774 46889999999776422 1121111 000111 446678888
Q ss_pred ecchhHH----hhhcCCc--ceEEcCCCChHHHHHHHHHhhCC-CCCCCChhHHHHHHHHHhC---CChHHH-HHHHHHH
Q 037947 293 SRRKDLL----YNEMNSQ--KNFLINVLSDQEAVQLFEKMSGV-FEGPLDFQNLAIKIARECG---GLPVAI-TTVATAL 361 (780)
Q Consensus 293 tr~~~v~----~~~~~~~--~~~~l~~L~~~~~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~---GlPLai-~~~~~~L 361 (780)
|+..... ....... ..+.+++++.++..+++...+.. .....-..+..+.+++.++ |.|..+ ..+..+.
T Consensus 174 t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 174 TNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp CSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 8765321 1111112 47899999999999999987531 0111111246778888888 999433 3332222
Q ss_pred h-----C--C-ChhHHHHHHHHHhcCCCCCCCCchhhhhccccccccccCchhHHHHHHhhc-ccCCCCCcChhHHHHHH
Q 037947 362 R-----N--K-SLFVWKDALLQLRSSNHRDISGLDSTVYSSVKLSYNFLKSLEAQSLFLLCS-LLNDGSRIPIDDLLRCA 432 (780)
Q Consensus 362 ~-----~--~-~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s-~fp~~~~i~~~~Li~~W 432 (780)
. + . +.+.+..++..... ..+.-++..||.+ .+..+...+ ++..+..+....+.+..
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~~--------------~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~ 318 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIER--------------DRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERY 318 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHHH--------------HHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHhh--------------chHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHH
Confidence 1 1 1 56666666655321 1234456778875 555555444 33322344445343322
Q ss_pred h----ccCcCCCcccHHHHHHHHHHHHHHHHhhccccc
Q 037947 433 M----GLDLFSDVFSLEEARSRMHHLIDDLQASCLLLD 466 (780)
Q Consensus 433 ~----aeg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 466 (780)
. ..| . ... +...+.++++.|...++++.
T Consensus 319 ~~~~~~~~-~-~~~----~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 319 KELTSTLG-L-EHV----TLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHHHHHTT-C-CCC----CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhcC-C-CCC----CHHHHHHHHHHHHhCCCeEE
Confidence 1 112 1 111 12345567888888898864
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.31 E-value=1.2e-11 Score=119.51 Aligned_cols=123 Identities=19% Similarity=0.222 Sum_probs=76.2
Q ss_pred cEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCcc--ccCCCCCCEEEccCccCCC--cccccccCCCcEEEee
Q 037947 536 KLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPST--LGCLINLQTLSFECCVLGD--VATVGALKKLVILSFR 611 (780)
Q Consensus 536 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~--i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~ 611 (780)
++++++++.+. .+|..+. ..|++|++++|.++.+|.. +..+++|++|+|++|.++. +..++.+.+|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 45555555543 4554332 2566666666666665542 6666667777776666665 3456666677777777
Q ss_pred cCCCCccChh-hcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCC
Q 037947 612 NSHIEQLPEE-IGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFT 663 (780)
Q Consensus 612 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 663 (780)
+|.+..+|.. +..+++|++|++++ +.++.++|..+..+++|++|++++|.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCcCCccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 7666666543 56667777777766 566666566666677777777766644
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.29 E-value=3.7e-12 Score=121.19 Aligned_cols=128 Identities=17% Similarity=0.200 Sum_probs=74.2
Q ss_pred cCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCC-cccc-cccCCCcE
Q 037947 530 LECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGD-VATV-GALKKLVI 607 (780)
Q Consensus 530 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i-~~l~~L~~ 607 (780)
..+++|+.|++++|.+. .+|. +....+.|++|++++|.++.+ ..++.+++|++|++++|.+.. ++.+ +.+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 35566666666666655 2332 222233666666666666655 456666666666666666655 3233 56666666
Q ss_pred EEeecCCCCccCh--hhcCCCCCCEEecCCCCCCcccCcc---ccCCCcccceeeccCC
Q 037947 608 LSFRNSHIEQLPE--EIGQLTRLKLLDLSNCSKLKSIRPN---VISNLPRLEELYMGNS 661 (780)
Q Consensus 608 L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~~~~---~l~~l~~L~~L~l~~~ 661 (780)
|++++|.+..+|. .+..+++|++|++++ +.+..+|.. .++.+++|+.|++++|
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 6666666666665 566666666666666 444544332 2555666666666554
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=4.8e-12 Score=116.82 Aligned_cols=130 Identities=22% Similarity=0.183 Sum_probs=106.8
Q ss_pred CCCCccEEEecCCCCC--CCCccccCCCCCCEEEccCccCCCcccccccCCCcEEEeecCCCCc-cChhhcCCCCCCEEe
Q 037947 556 GVPSLQVLSLNGFHFP--SLPSTLGCLINLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQ-LPEEIGQLTRLKLLD 632 (780)
Q Consensus 556 ~l~~Lr~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~l~~L~~L~ 632 (780)
..+.|+.|++++|.++ .+|..++.+++|++|++++|.+..+..++.+++|++|++++|.+.. +|..++.+++|++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 3578999999999998 7899899999999999999999888889999999999999999998 888888899999999
Q ss_pred cCCCCCCcccC-ccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEee
Q 037947 633 LSNCSKLKSIR-PNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMH 690 (780)
Q Consensus 633 l~~~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~ 690 (780)
+++ +.++.++ +..++.+++|++|++++|.+.. ........+..+++|+.|+++
T Consensus 95 ls~-N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~----~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTN----LNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTT-SCCCSHHHHGGGGGCTTCCEEECTTCGGGG----STTHHHHHHHHCTTCCEETTB
T ss_pred CCC-CcCCChHHHHHHhhCCCCCEEeCcCCcccc----hHHHHHHHHHHCCCcccccCC
Confidence 999 6777763 2568899999999999985421 111111346777888888764
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.29 E-value=2.2e-11 Score=117.56 Aligned_cols=123 Identities=19% Similarity=0.317 Sum_probs=91.8
Q ss_pred cEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCC--cccccccCCCcEEEeecC
Q 037947 536 KLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGD--VATVGALKKLVILSFRNS 613 (780)
Q Consensus 536 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~ 613 (780)
+.++++++.+. .+|..+ .+.|++|++++|.++.+|..+..+++|++|+|++|.++. +..+..+.+|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45566666554 455543 256788888888888888788888888888888888777 345778888888888888
Q ss_pred CCCccCh-hhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCC
Q 037947 614 HIEQLPE-EIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFT 663 (780)
Q Consensus 614 ~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 663 (780)
.+..+|. .+..+++|++|++++ +.++.+++..+..+++|+.|++++|..
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence 8887765 577888888888887 677777776677788888888887754
No 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.28 E-value=2.7e-10 Score=123.34 Aligned_cols=290 Identities=13% Similarity=0.078 Sum_probs=178.0
Q ss_pred cccCCchHHHHHHHHHHcc----CCcc--EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHH
Q 037947 151 EQFESRMPTFQDIMEALKD----DNIN--VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~~----~~~~--vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 224 (780)
..++||+.+++++.+++.. .... .+.|+|++|+||||+|+.+++...... -...+|++++...+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCccCCCHHHHHHHHH
Confidence 5689999999999998863 3334 899999999999999999998875431 12467778778888889999999
Q ss_pred HHcCCCcCCC-CCHHHHHHHHHHHhc--cCcEEEEEeCCCCcc--ccccccCCcccccccccC-CCCCcEEEEEecchhH
Q 037947 225 GALGLFLGEH-EDVSERAHLLRQRLK--ASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKD-DRRRCAMLLTSRRKDL 298 (780)
Q Consensus 225 ~~l~~~~~~~-~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~-~~~~s~iivTtr~~~v 298 (780)
..++...... .+..+....+.+.+. +++.+||||+++... ....+...+ ..+.. ...+..||++|+....
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~----~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLG----QEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHT----TCHHHHSSCCEEEEEEESSTHH
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHH----HhCCCCCcCCEEEEEEECCchH
Confidence 9987643322 235566666666665 468899999997752 122221111 00011 0146678888877643
Q ss_pred Hhhh----c--CCcceEEcCCCChHHHHHHHHHhhCCC-CCCCChhHHHHHHHHHh---------CCChHHHHHHHHHHh
Q 037947 299 LYNE----M--NSQKNFLINVLSDQEAVQLFEKMSGVF-EGPLDFQNLAIKIAREC---------GGLPVAITTVATALR 362 (780)
Q Consensus 299 ~~~~----~--~~~~~~~l~~L~~~~~~~Lf~~~~~~~-~~~~~~~~~~~~i~~~c---------~GlPLai~~~~~~L~ 362 (780)
.... . -....++++|++.++..+++...+... ....--.+..+.|++.+ +|.|..+..+.....
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 2110 0 112369999999999999998876421 11122346788999999 798865544433221
Q ss_pred ------CC---ChhHHHHHHHHHhcCCCCCCCCchhhhhccccccccccCchhHHHHHHhhcccC---CCCCcChhHHHH
Q 037947 363 ------NK---SLFVWKDALLQLRSSNHRDISGLDSTVYSSVKLSYNFLKSLEAQSLFLLCSLLN---DGSRIPIDDLLR 430 (780)
Q Consensus 363 ------~~---~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp---~~~~i~~~~Li~ 430 (780)
+. +.+....+..... ...+.-.+..||.+ .+.++..++.+. .+..+....+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~--------------~~~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~ 316 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL--------------FGISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEE 316 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS--------------CCCCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh--------------hhhHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHH
Confidence 21 3333333333321 12233345678875 677766666544 222455555555
Q ss_pred HHhc----cCcCCCcccHHHHHHHHHHHHHHHHhhccccc
Q 037947 431 CAMG----LDLFSDVFSLEEARSRMHHLIDDLQASCLLLD 466 (780)
Q Consensus 431 ~W~a----eg~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 466 (780)
.+.. .|... - ....+..++++|...+++..
T Consensus 317 ~~~~~~~~~~~~~--~----~~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 317 SYKIVCEEYGERP--R----VHSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp HHHHHHHHTTCCC--C----CHHHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHHcCCCC--C----CHHHHHHHHHHHHhCCCeEE
Confidence 4332 12110 0 12345567888999999864
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=2.4e-11 Score=117.30 Aligned_cols=126 Identities=18% Similarity=0.305 Sum_probs=108.5
Q ss_pred ccEEEecCCCCCCCCccccCCCCCCEEEccCccCCCc-c--cccccCCCcEEEeecCCCCcc-ChhhcCCCCCCEEecCC
Q 037947 560 LQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGDV-A--TVGALKKLVILSFRNSHIEQL-PEEIGQLTRLKLLDLSN 635 (780)
Q Consensus 560 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~-~--~i~~l~~L~~L~l~~~~l~~l-p~~i~~l~~L~~L~l~~ 635 (780)
.++++++++.++.+|..+.. +|++|++++|.+..+ + .++.+.+|++|++++|.++.+ |..+..+++|++|++++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 37899999999999987755 999999999999883 3 389999999999999999988 67899999999999999
Q ss_pred CCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCC
Q 037947 636 CSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQ 695 (780)
Q Consensus 636 ~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 695 (780)
+.++.+++..++.+++|++|++++|.+....+ ..+..+++|+.|+++.|.+.
T Consensus 88 -N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 -NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-------GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp -CCCCEECSSSSTTCTTCCEEECCSSCCCEECT-------TSSTTCTTCCEEECTTCCBC
T ss_pred -CcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-------HHhhcCCCCCEEEeCCCCcc
Confidence 78999988888999999999999996543332 45677889999999988755
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.28 E-value=2.5e-12 Score=137.90 Aligned_cols=237 Identities=14% Similarity=0.134 Sum_probs=159.8
Q ss_pred EccCCCCcc-CCCccC-CCCccEEEeccCccccccCc---hhhcCCC-CccEEEecCCCCCCC-CccccCC-----CCCC
Q 037947 517 SLPCRDIQE-LPERLE-CPKLKLFFLFSKKLSLVIPD---LFFEGVP-SLQVLSLNGFHFPSL-PSTLGCL-----INLQ 584 (780)
Q Consensus 517 ~l~~~~~~~-~~~~~~-~~~L~~L~l~~~~~~~~~~~---~~~~~l~-~Lr~L~l~~~~~~~l-p~~i~~l-----~~L~ 584 (780)
.+..+.+.. +|.... .++|+.|++++|.+....+. ..+..++ .|++|+|++|.++.. +..+..+ ++|+
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 83 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT 83 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence 445555553 333344 44599999999998754331 3456788 899999999998854 5556654 9999
Q ss_pred EEEccCccCCC--ccc----cccc-CCCcEEEeecCCCCccChh-----hcC-CCCCCEEecCCCCCCcccCc----ccc
Q 037947 585 TLSFECCVLGD--VAT----VGAL-KKLVILSFRNSHIEQLPEE-----IGQ-LTRLKLLDLSNCSKLKSIRP----NVI 647 (780)
Q Consensus 585 ~L~L~~~~~~~--~~~----i~~l-~~L~~L~l~~~~l~~lp~~-----i~~-l~~L~~L~l~~~~~l~~~~~----~~l 647 (780)
+|+|++|.++. +.. +..+ .+|++|++++|.++..+.. +.. .++|++|++++ +.++.... ..+
T Consensus 84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG-NDLGIKSSDELIQIL 162 (362)
T ss_dssp EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT-SCGGGSCHHHHHHHH
T ss_pred EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC-CcCCHHHHHHHHHHH
Confidence 99999999876 333 4444 8999999999999876542 344 36999999999 56663322 223
Q ss_pred CCCc-ccceeeccCCCCccccccCCccch-hhhcCC-CCCCEEEeeccCCCC-----CCccc-c-ccCccEEEEEecCcc
Q 037947 648 SNLP-RLEELYMGNSFTHWEIEGQNNASL-AELNQL-SRLTTLEMHILDAQV-----MPREL-F-SVGLERYKIFLGDVW 717 (780)
Q Consensus 648 ~~l~-~L~~L~l~~~~~~~~~~~~~~~~l-~~l~~L-~~L~~L~l~~~~~~~-----~~~~~-~-~~~L~~L~i~~~~~~ 717 (780)
..++ +|++|++++|.+.. .....+ ..+... ++|+.|+++.|.+.. ++..+ . .++|++|++..+...
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~----~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLAS----KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp HTSCTTCCEEECTTSCGGG----SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred hcCCccccEeeecCCCCch----hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 4555 99999999995422 122222 234555 599999999998776 44444 2 458999999876543
Q ss_pred c--------ccccccccceeEeecCCCccc-hhHHHH------Hhcccceeecccc
Q 037947 718 S--------WTGKYETSRTLKLKLDNPMYL-EHGIKM------LLRRTEDLHLDKL 758 (780)
Q Consensus 718 ~--------~~~~~~~l~~l~L~~~~~~~~-~~~~~~------~l~~L~~L~l~~~ 758 (780)
. +...++.++.+.|+.+..... +..+.. .+++|+.|+++++
T Consensus 239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 2 245667788888876542222 222211 2567888888884
No 133
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.27 E-value=7.8e-11 Score=118.47 Aligned_cols=200 Identities=13% Similarity=0.104 Sum_probs=119.7
Q ss_pred cCCccccCCchHHHHHHHHHHccCC-ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHH
Q 037947 147 LRGYEQFESRMPTFQDIMEALKDDN-INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAG 225 (780)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 225 (780)
+.....++||+..++.+..++.... .+.+.|+|++|+||||+|+.+++.......+... ....... ...+..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~ 91 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT------PCGVCDN-CREIEQ 91 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS------CCSCSHH-HHHHHT
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC------CCcccHH-HHHHhc
Confidence 3445679999999999999987544 4589999999999999999999877543211100 0000000 001100
Q ss_pred HcCCCc----CCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCc--cccccccCCcccccccccCCCCCcEEEEEec
Q 037947 226 ALGLFL----GEHEDVSERAHLLRQRL-----KASRVLVILDDVWNR--LDLDAVGIPYKNYQNEIKDDRRRCAMLLTSR 294 (780)
Q Consensus 226 ~l~~~~----~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr 294 (780)
...... ............+.+.+ .+++.+||+||++.. ..++.+...+ .....+..+|+||+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l-------~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 92 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL-------EEPPEHVKFLLATT 164 (250)
T ss_dssp TCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHH-------HSCCTTEEEEEEES
T ss_pred cCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHH-------hcCCCceEEEEEeC
Confidence 000000 00000111122222222 246799999999664 2333332222 33345778888887
Q ss_pred chhHH-hhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHH
Q 037947 295 RKDLL-YNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATAL 361 (780)
Q Consensus 295 ~~~v~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L 361 (780)
..... .........+++++++.++..+++...+.... ..--.+..+.|++.|+|.|..+..+...+
T Consensus 165 ~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 165 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH-IAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 65422 11223356899999999999999998774221 12224678899999999999988776544
No 134
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.26 E-value=7.8e-11 Score=116.66 Aligned_cols=190 Identities=12% Similarity=0.069 Sum_probs=120.4
Q ss_pred CCccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHc
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGAL 227 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l 227 (780)
.....++||+..++.+.+++.....+.+.|+|++|+|||++|+.+++.......-...+.++.+...+...+...+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 44567899999999999999876666699999999999999999998764332112234444444333333222221111
Q ss_pred CCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc--cccccCCcccccccccCCCCCcEEEEEecchhHH-hhhcC
Q 037947 228 GLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL-YNEMN 304 (780)
Q Consensus 228 ~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~-~~~~~ 304 (780)
.... .-.+++.+||+||++.... .+.+...+ .....+..+|+||+..... .....
T Consensus 94 ~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l-------~~~~~~~~~i~~~~~~~~~~~~l~~ 151 (226)
T 2chg_A 94 RTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTM-------EMYSKSCRFILSCNYVSRIIEPIQS 151 (226)
T ss_dssp TSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHH-------HHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred cccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHH-------HhcCCCCeEEEEeCChhhcCHHHHH
Confidence 1000 0125788999999976532 22222222 3334567888888765421 11223
Q ss_pred CcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHH
Q 037947 305 SQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATA 360 (780)
Q Consensus 305 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 360 (780)
....+++.+++.++..+++.+.+..... .--.+..+.|++.++|.|..+..+...
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l~~ 206 (226)
T 2chg_A 152 RCAVFRFKPVPKEAMKKRLLEICEKEGV-KITEDGLEALIYISGGDFRKAINALQG 206 (226)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCceeecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3458999999999999999887642111 122367788999999999965554443
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=1.2e-11 Score=117.65 Aligned_cols=136 Identities=18% Similarity=0.291 Sum_probs=108.5
Q ss_pred hcCCCCccEEEecCCCCCCCCccccCCC-CCCEEEccCccCCCcccccccCCCcEEEeecCCCCccChhh-cCCCCCCEE
Q 037947 554 FEGVPSLQVLSLNGFHFPSLPSTLGCLI-NLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQLPEEI-GQLTRLKLL 631 (780)
Q Consensus 554 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~-~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L 631 (780)
+..+..|+.|++++|.++.+|. +..+. +|++|++++|.++.++.++.+.+|++|++++|.+..+|..+ +.+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 3567899999999999998865 55555 99999999999988888999999999999999999998766 899999999
Q ss_pred ecCCCCCCcccCc-cccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCC
Q 037947 632 DLSNCSKLKSIRP-NVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQ 695 (780)
Q Consensus 632 ~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 695 (780)
++++ +.++.+|+ ..++.+++|++|++++|.+.. .+ ......+..+++|+.|+++.|...
T Consensus 94 ~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~---~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 94 ILTN-NSLVELGDLDPLASLKSLTYLCILRNPVTN-KK---HYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp ECCS-CCCCCGGGGGGGGGCTTCCEEECCSSGGGG-ST---THHHHHHHHCTTCSEETTEECCHH
T ss_pred ECCC-CcCCcchhhHhhhcCCCCCEEEecCCCCCC-cH---hHHHHHHHHCCccceeCCCcCCHH
Confidence 9998 67777764 357889999999999885421 11 111123677888899988877643
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=2.5e-12 Score=150.13 Aligned_cols=130 Identities=22% Similarity=0.263 Sum_probs=110.2
Q ss_pred CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCC-cccccccCCCcEEE
Q 037947 531 ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGD-VATVGALKKLVILS 609 (780)
Q Consensus 531 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~ 609 (780)
.+++|+.|++++|.+. .+|..++ .+++|++|+|++|.++.+|..++.|++|++|+|++|.++. |..+++|.+|++|+
T Consensus 222 ~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~ 299 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY 299 (727)
T ss_dssp CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred cCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence 7889999999999987 7888776 7999999999999999999999999999999999999988 67899999999999
Q ss_pred eecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcc-cceeeccCCCC
Q 037947 610 FRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPR-LEELYMGNSFT 663 (780)
Q Consensus 610 l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~-L~~L~l~~~~~ 663 (780)
|++|.++.+|..++.|++|++|+|++ +.++..+|..+..+.. +..|++.+|..
T Consensus 300 L~~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~~~~~~~~l~l~~N~l 353 (727)
T 4b8c_D 300 FFDNMVTTLPWEFGNLCNLQFLGVEG-NPLEKQFLKILTEKSVTGLIFYLRDNRP 353 (727)
T ss_dssp CCSSCCCCCCSSTTSCTTCCCEECTT-SCCCSHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCccChhhhcCCCccEEeCCC-CccCCCChHHHhhcchhhhHHhhccCcc
Confidence 99999999999999999999999999 6777666655544321 12345555543
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=6.8e-11 Score=114.12 Aligned_cols=126 Identities=21% Similarity=0.247 Sum_probs=103.0
Q ss_pred ccEEEecCCCCCCCCccccCCCCCCEEEccCccCCC-cccccccCCCcEEEeecCCCCccCh-hhcCCCCCCEEecCCCC
Q 037947 560 LQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGD-VATVGALKKLVILSFRNSHIEQLPE-EIGQLTRLKLLDLSNCS 637 (780)
Q Consensus 560 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~ 637 (780)
-++++++++.++.+|..+. .+|++|++++|.+.. |..+..+.+|++|++++|.++.+|. .+..+++|++|++++ +
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N 88 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-N 88 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-C
Confidence 3688999999999998764 689999999999887 5788899999999999999998875 588999999999998 7
Q ss_pred CCcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCC
Q 037947 638 KLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQ 695 (780)
Q Consensus 638 ~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~ 695 (780)
.++.+++..+..+++|++|++++|.+..... ..+..+++|+.|+++.|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~-------~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPE-------GAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCT-------TTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeCh-------hhhhcCccccEEEeCCCCee
Confidence 8888888778899999999999886532111 24667788888888877643
No 138
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=4.7e-11 Score=129.11 Aligned_cols=293 Identities=14% Similarity=0.134 Sum_probs=170.9
Q ss_pred ccccCCchHHHHHHHHHHc----cCCccEEEEEcCCCChHHHHHHHHHHHHhccCC-CCeEEEEEEccCCCHHHHHHHHH
Q 037947 150 YEQFESRMPTFQDIMEALK----DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKL-FDEVVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~~~~i~ 224 (780)
+..|+||+++++.+.+++. ......+.|+|++|+||||||+.+++....... -...+|+++....+...+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999887 345678999999999999999999988754311 12467888777778888888888
Q ss_pred HHcCCCcCCC-CCHHHHHHHHHHHhcc--CcEEEEEeCCCCcccc--ccccCCcccccccccC-CCCCcEEEEEecchhH
Q 037947 225 GALGLFLGEH-EDVSERAHLLRQRLKA--SRVLVILDDVWNRLDL--DAVGIPYKNYQNEIKD-DRRRCAMLLTSRRKDL 298 (780)
Q Consensus 225 ~~l~~~~~~~-~~~~~~~~~l~~~L~~--kr~LlVlDdv~~~~~~--~~l~~~~~~~~~~l~~-~~~~s~iivTtr~~~v 298 (780)
.+++...... .+..+....+.+.+.. ++.+||||+++..... ......+ ...+.. ...+..+|+||+....
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l---~~~~~~~~~~~~~~I~~~~~~~~ 175 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKL---SRINSEVNKSKISFIGITNDVKF 175 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHH---HHHHHSCCC--EEEEEEESCGGG
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHH---hhchhhcCCCeEEEEEEECCCCh
Confidence 8876543322 2245556667777654 5899999999765321 1110001 000011 2335667888876543
Q ss_pred Hh----hh--cCCcceEEcCCCChHHHHHHHHHhhCC-CCCCCChhHHHHHHHHHhC---CChHHHHHHHHH-Hh-----
Q 037947 299 LY----NE--MNSQKNFLINVLSDQEAVQLFEKMSGV-FEGPLDFQNLAIKIARECG---GLPVAITTVATA-LR----- 362 (780)
Q Consensus 299 ~~----~~--~~~~~~~~l~~L~~~~~~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~---GlPLai~~~~~~-L~----- 362 (780)
.. .. .-....+++++++.++..+++.+.+.. .....-..++.+.+++.++ |.|..+..+... ..
T Consensus 176 ~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~ 255 (386)
T 2qby_A 176 VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERM 255 (386)
T ss_dssp GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc
Confidence 21 00 111257999999999999999986531 1112223467778888888 999844433322 21
Q ss_pred C--C-ChhHHHHHHHHHhcCCCCCCCCchhhhhccccccccccCchhHHHHHHhhcccCC-C-CCcChhHHHHHHh--cc
Q 037947 363 N--K-SLFVWKDALLQLRSSNHRDISGLDSTVYSSVKLSYNFLKSLEAQSLFLLCSLLND-G-SRIPIDDLLRCAM--GL 435 (780)
Q Consensus 363 ~--~-~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~~k~cfl~~s~fp~-~-~~i~~~~Li~~W~--ae 435 (780)
+ . +.+.+..++.... ...+.-.+..+|.+ .+..+..++.+-+ + ..+....+.+... ++
T Consensus 256 ~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~-~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~ 320 (386)
T 2qby_A 256 KDTKVKEEYVYMAKEEIE--------------RDRVRDIILTLPFH-SKLVLMAVVSISSEENVVSTTGAVYETYLNICK 320 (386)
T ss_dssp TCSSCCHHHHHHHHHHHH--------------HHHHHHHHHTSCHH-HHHHHHHHHHHC-----CEEHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHh--------------hchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHH
Confidence 1 1 5555555554422 12234445667764 5555554442211 1 1233333322111 11
Q ss_pred --CcCCCcccHHHHHHHHHHHHHHHHhhccccc
Q 037947 436 --DLFSDVFSLEEARSRMHHLIDDLQASCLLLD 466 (780)
Q Consensus 436 --g~i~~~~~~~~~~~~~~~~~~~L~~~~l~~~ 466 (780)
| +.. - ....+..+++.|...++++.
T Consensus 321 ~~g-~~~-~----~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 321 KLG-VEA-V----TQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp HHT-CCC-C----CHHHHHHHHHHHHHHTSEEE
T ss_pred hcC-CCC-C----CHHHHHHHHHHHHhCCCEEE
Confidence 1 100 0 11334556788888898854
No 139
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.23 E-value=5.6e-12 Score=135.13 Aligned_cols=199 Identities=11% Similarity=0.147 Sum_probs=145.0
Q ss_pred CceEEEccCCCCccCCC-----c-cCCC-CccEEEeccCccccccCchhh---cC-CCCccEEEecCCCCCCCC-cc---
Q 037947 512 DPIAISLPCRDIQELPE-----R-LECP-KLKLFFLFSKKLSLVIPDLFF---EG-VPSLQVLSLNGFHFPSLP-ST--- 576 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~~-----~-~~~~-~L~~L~l~~~~~~~~~~~~~~---~~-l~~Lr~L~l~~~~~~~lp-~~--- 576 (780)
.+++|.+++|.+...+. . ..++ +|+.|++++|.+....+..+. .. ++.|++|++++|.++..+ ..
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 48999999999887763 2 2677 899999999998765554432 22 289999999999988543 33
Q ss_pred -ccCC-CCCCEEEccCccCCC--ccc----ccc-cCCCcEEEeecCCCC-----ccChhhcCCC-CCCEEecCCCCCCcc
Q 037947 577 -LGCL-INLQTLSFECCVLGD--VAT----VGA-LKKLVILSFRNSHIE-----QLPEEIGQLT-RLKLLDLSNCSKLKS 641 (780)
Q Consensus 577 -i~~l-~~L~~L~L~~~~~~~--~~~----i~~-l~~L~~L~l~~~~l~-----~lp~~i~~l~-~L~~L~l~~~~~l~~ 641 (780)
+..+ ++|++|++++|.++. +.. +.. ..+|++|++++|.++ .++..+..++ +|++|++++ +.++.
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-n~l~~ 181 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG-NNLAS 181 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT-SCGGG
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC-CCCch
Confidence 4445 899999999999876 223 334 369999999999887 5666777776 999999999 56766
Q ss_pred cCccc----cCCC-cccceeeccCCCCccccccCCcc-chhhhcC-CCCCCEEEeeccCCCCCCccc------cccCccE
Q 037947 642 IRPNV----ISNL-PRLEELYMGNSFTHWEIEGQNNA-SLAELNQ-LSRLTTLEMHILDAQVMPREL------FSVGLER 708 (780)
Q Consensus 642 ~~~~~----l~~l-~~L~~L~l~~~~~~~~~~~~~~~-~l~~l~~-L~~L~~L~l~~~~~~~~~~~~------~~~~L~~ 708 (780)
..+.. +..+ ++|++|++++|.+.. .... ....+.. .++|+.|+++.|.+...+... .+++|+.
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~----~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~ 257 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGL----KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT 257 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGG----SCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCCh----hHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE
Confidence 65433 3344 599999999996432 1111 2233444 358999999999887765421 5688999
Q ss_pred EEEEecC
Q 037947 709 YKIFLGD 715 (780)
Q Consensus 709 L~i~~~~ 715 (780)
|.+..+.
T Consensus 258 L~L~~n~ 264 (362)
T 3goz_A 258 VYLDYDI 264 (362)
T ss_dssp EEEEHHH
T ss_pred EEeccCC
Confidence 9998765
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.23 E-value=1.5e-12 Score=149.66 Aligned_cols=258 Identities=10% Similarity=-0.032 Sum_probs=151.2
Q ss_pred CceEEEccCCCCccCC-C-ccC-CCC-ccEEEeccCcc-ccccCchhhcCCCCccEEEecCCCCCC-----CCccccCCC
Q 037947 512 DPIAISLPCRDIQELP-E-RLE-CPK-LKLFFLFSKKL-SLVIPDLFFEGVPSLQVLSLNGFHFPS-----LPSTLGCLI 581 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~-~-~~~-~~~-L~~L~l~~~~~-~~~~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~i~~l~ 581 (780)
..+.|.+.++.+.... . ... +++ |+.|++++|.. .......+..++++|++|+|++|.++. ++..+..++
T Consensus 113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~ 192 (592)
T 3ogk_B 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNT 192 (592)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCC
T ss_pred CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCC
Confidence 4677777766543211 1 111 334 88888877652 111111223467888888888877542 223445677
Q ss_pred CCCEEEccCccCCC------cccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCC---cccCccccCCCcc
Q 037947 582 NLQTLSFECCVLGD------VATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKL---KSIRPNVISNLPR 652 (780)
Q Consensus 582 ~L~~L~L~~~~~~~------~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l---~~~~~~~l~~l~~ 652 (780)
+|++|++++|.+.. +..+.++++|++|++++|.+..+|..+..+++|++|+++.+... ... +..++.+++
T Consensus 193 ~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~~~~ 271 (592)
T 3ogk_B 193 SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEK-YMNLVFPRK 271 (592)
T ss_dssp CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTS-SSCCCCCTT
T ss_pred CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHH-HHHhhcccc
Confidence 88888888877752 23345778888888888877778888888888888888652221 111 233667778
Q ss_pred cceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCCCCCC--ccc-cccCccEEEEEecCc----ccccccccc
Q 037947 653 LEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDAQVMP--REL-FSVGLERYKIFLGDV----WSWTGKYET 725 (780)
Q Consensus 653 L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~~~~~--~~~-~~~~L~~L~i~~~~~----~~~~~~~~~ 725 (780)
|+.|.++++.. ......+..+++|+.|+++.|.+.... ..+ .+++|++|.+..+.. ..+...++.
T Consensus 272 L~~L~l~~~~~--------~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 272 LCRLGLSYMGP--------NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCEEEETTCCT--------TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred ccccCccccch--------hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 88887765421 111133456778888888877643211 111 678888888873211 123355677
Q ss_pred cceeEeec----------CCCccc--hhHHHHHhcccceeeccccccccccccccCCCcccCccCC
Q 037947 726 SRTLKLKL----------DNPMYL--EHGIKMLLRRTEDLHLDKLNGFQNVLHELDGEGFPRLKHL 779 (780)
Q Consensus 726 l~~l~L~~----------~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L~~L 779 (780)
++.|.|.. +..... ...+...+++|+.|.+ .++.+........+..+|+|++|
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L 408 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDF 408 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEE
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEE
Confidence 88888873 222221 1223344788999988 44666543332222346777765
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=5.3e-11 Score=134.49 Aligned_cols=104 Identities=25% Similarity=0.315 Sum_probs=50.8
Q ss_pred ccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCCcccccccCCCcEEEeecCC
Q 037947 535 LKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGDVATVGALKKLVILSFRNSH 614 (780)
Q Consensus 535 L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~ 614 (780)
|+.|++++|.+.. +|. +..+++|+.|+|++|.++.+|..++.+++|++|+|++|.++.++.++.+++|++|++++|.
T Consensus 443 L~~L~Ls~n~l~~-lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR 519 (567)
T ss_dssp CSEEECTTSCCSS-CCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred ceEEEecCCCCCC-CcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCC
Confidence 4455555554442 343 3445555555555555555555555555555555555554443344455555555555554
Q ss_pred CCcc--ChhhcCCCCCCEEecCCCCCCccc
Q 037947 615 IEQL--PEEIGQLTRLKLLDLSNCSKLKSI 642 (780)
Q Consensus 615 l~~l--p~~i~~l~~L~~L~l~~~~~l~~~ 642 (780)
++.+ |..++.+++|++|++++ +.++..
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~-N~l~~~ 548 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQG-NSLCQE 548 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTT-SGGGGS
T ss_pred CCCCCCcHHHhcCCCCCEEEecC-CcCCCC
Confidence 4444 44445555555555544 334433
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.19 E-value=7.9e-12 Score=143.57 Aligned_cols=73 Identities=8% Similarity=-0.119 Sum_probs=37.9
Q ss_pred ccCccEEEEEecCcc-----cccccccccceeEeecCCCccc-hhHHHHHhcccceeeccccccccccccccCCCcccCc
Q 037947 703 SVGLERYKIFLGDVW-----SWTGKYETSRTLKLKLDNPMYL-EHGIKMLLRRTEDLHLDKLNGFQNVLHELDGEGFPRL 776 (780)
Q Consensus 703 ~~~L~~L~i~~~~~~-----~~~~~~~~l~~l~L~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L 776 (780)
+++|+.|.+..+... .+...++.++.|.|+.|..... ...+...+++|+.|+|++|. +...........+|.|
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l 540 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYW 540 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTE
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCc
Confidence 556666666554432 2344556667777666552111 22233346777777777755 5444333333445544
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.17 E-value=2.1e-10 Score=109.07 Aligned_cols=105 Identities=27% Similarity=0.416 Sum_probs=60.1
Q ss_pred CCccEEEecCCCCCCCCc-cccCCCCCCEEEccCccCCCc--ccccccCCCcEEEeecCCCCccChh-hcCCCCCCEEec
Q 037947 558 PSLQVLSLNGFHFPSLPS-TLGCLINLQTLSFECCVLGDV--ATVGALKKLVILSFRNSHIEQLPEE-IGQLTRLKLLDL 633 (780)
Q Consensus 558 ~~Lr~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~~~~~--~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l 633 (780)
+.|+.|++++|.++.+|. .+..+++|++|++++|.+..+ ..++.+.+|++|++++|.++.+|.. +..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 455566666665555443 345556666666666655552 2245666666666666666665543 355666666666
Q ss_pred CCCCCCcccCccccCCCcccceeeccCCCC
Q 037947 634 SNCSKLKSIRPNVISNLPRLEELYMGNSFT 663 (780)
Q Consensus 634 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 663 (780)
++ +.++.+++..+..+++|++|++++|.+
T Consensus 108 ~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 108 DT-NQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cC-CcceEeCHHHhcCCcccCEEEecCCCe
Confidence 66 455566555455566666666666543
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.15 E-value=4.5e-13 Score=130.33 Aligned_cols=106 Identities=21% Similarity=0.293 Sum_probs=62.2
Q ss_pred hcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCC-cccccccCCCcEEEeecCCCCccChhhcCCCCCCEEe
Q 037947 554 FEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGD-VATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLD 632 (780)
Q Consensus 554 ~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~ 632 (780)
+..++.|++|++++|.++.+| .+..+++|++|++++|.+.. +..++.+++|++|++++|.+..+| .+..+++|++|+
T Consensus 44 ~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~ 121 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY 121 (198)
T ss_dssp HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence 345666666666666666655 55666666666666666555 334445566666666666666655 455666666666
Q ss_pred cCCCCCCcccCc-cccCCCcccceeeccCCC
Q 037947 633 LSNCSKLKSIRP-NVISNLPRLEELYMGNSF 662 (780)
Q Consensus 633 l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~ 662 (780)
+++ +.++.+++ ..+..+++|++|++++|.
T Consensus 122 l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 122 MSN-NKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ESE-EECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCC-CcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 665 44554432 235566666666666653
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.14 E-value=3.6e-10 Score=107.48 Aligned_cols=125 Identities=22% Similarity=0.293 Sum_probs=105.6
Q ss_pred eEEEccCCCCccCCCccCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCcc-ccCCCCCCEEEccCcc
Q 037947 514 IAISLPCRDIQELPERLECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPST-LGCLINLQTLSFECCV 592 (780)
Q Consensus 514 ~~l~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~ 592 (780)
+.+.+.++.+..+|.. ..++++.|++++|.+. .+|...+..++.|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~-~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTG-IPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTT-CCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCC-CCCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 4677788888888753 3479999999999987 56666678899999999999999988754 6899999999999999
Q ss_pred CCC-cc-cccccCCCcEEEeecCCCCccChhh-cCCCCCCEEecCCCCCCcc
Q 037947 593 LGD-VA-TVGALKKLVILSFRNSHIEQLPEEI-GQLTRLKLLDLSNCSKLKS 641 (780)
Q Consensus 593 ~~~-~~-~i~~l~~L~~L~l~~~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~ 641 (780)
++. ++ .++.+.+|++|++++|.++.+|..+ ..+++|++|++++ +.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~~~~ 138 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT-NPWDC 138 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS-SCBCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecC-CCeec
Confidence 988 33 4789999999999999999998864 7899999999998 44443
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.14 E-value=3e-12 Score=147.12 Aligned_cols=257 Identities=18% Similarity=0.113 Sum_probs=142.4
Q ss_pred CceEEEccCCCCccCC--Ccc-CCCCccEEEeccCc-cccccCchhhcCCCCccEEEecCCCCCC-----CCccccCCCC
Q 037947 512 DPIAISLPCRDIQELP--ERL-ECPKLKLFFLFSKK-LSLVIPDLFFEGVPSLQVLSLNGFHFPS-----LPSTLGCLIN 582 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~--~~~-~~~~L~~L~l~~~~-~~~~~~~~~~~~l~~Lr~L~l~~~~~~~-----lp~~i~~l~~ 582 (780)
..++|.+.++.+.... ... .+++|++|++.+|. +.......+..++++|++|++++|.++. ++.....+++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~ 185 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTS 185 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCc
Confidence 4666777666543211 111 46777777777763 3222222334457777777777776542 2223335667
Q ss_pred CCEEEccCcc--CCC--cc-cccccCCCcEEEeecC-CCCccChhhcCCCCCCEEecCCCCC------CcccCccccCCC
Q 037947 583 LQTLSFECCV--LGD--VA-TVGALKKLVILSFRNS-HIEQLPEEIGQLTRLKLLDLSNCSK------LKSIRPNVISNL 650 (780)
Q Consensus 583 L~~L~L~~~~--~~~--~~-~i~~l~~L~~L~l~~~-~l~~lp~~i~~l~~L~~L~l~~~~~------l~~~~~~~l~~l 650 (780)
|++|++++|. +.. +. -+..+++|++|++++| .+..+|..+..+++|++|++..|.. +..+++ .+.++
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~l~~~ 264 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV-ALSGC 264 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH-HHHTC
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH-HHhcC
Confidence 7777777765 211 11 1244577777777776 5556666777777777777655321 222322 35667
Q ss_pred cccceee-ccCCCCccccccCCccch-hhhcCCCCCCEEEeeccCCCCC--Cccc-cccCccEEEEEecCc----ccccc
Q 037947 651 PRLEELY-MGNSFTHWEIEGQNNASL-AELNQLSRLTTLEMHILDAQVM--PREL-FSVGLERYKIFLGDV----WSWTG 721 (780)
Q Consensus 651 ~~L~~L~-l~~~~~~~~~~~~~~~~l-~~l~~L~~L~~L~l~~~~~~~~--~~~~-~~~~L~~L~i~~~~~----~~~~~ 721 (780)
++|+.|. +.+. ....+ .-+..+++|+.|++++|.+... +..+ .+++|++|.+..+.. ..+..
T Consensus 265 ~~L~~Ls~~~~~---------~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~ 335 (594)
T 2p1m_B 265 KELRCLSGFWDA---------VPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLAS 335 (594)
T ss_dssp TTCCEEECCBTC---------CGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHH
T ss_pred CCcccccCCccc---------chhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHH
Confidence 7777773 2221 01111 2234678899999988874321 1111 678999999986621 12233
Q ss_pred cccccceeEeecC------CCccc-hhH---HHHHhcccceeeccccccccccccccCCCcccCccCC
Q 037947 722 KYETSRTLKLKLD------NPMYL-EHG---IKMLLRRTEDLHLDKLNGFQNVLHELDGEGFPRLKHL 779 (780)
Q Consensus 722 ~~~~l~~l~L~~~------~~~~~-~~~---~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~fp~L~~L 779 (780)
.++.++.|.|..+ .+... ... +...+++|+.|.+ +|+++...........+|+|++|
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~~L~~L 402 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRPNMTRF 402 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCTTCCEE
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCCCccee
Confidence 5677888888431 22222 222 2334789999955 45666554433223357888876
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.08 E-value=1.2e-11 Score=142.01 Aligned_cols=103 Identities=19% Similarity=0.171 Sum_probs=71.4
Q ss_pred CCceEEEccCC-CCcc--CCCcc-CCCCccEEEeccCccccccCc---hhhcCCCCccEEEecCCC--CC--CCCccccC
Q 037947 511 KDPIAISLPCR-DIQE--LPERL-ECPKLKLFFLFSKKLSLVIPD---LFFEGVPSLQVLSLNGFH--FP--SLPSTLGC 579 (780)
Q Consensus 511 ~~~~~l~l~~~-~~~~--~~~~~-~~~~L~~L~l~~~~~~~~~~~---~~~~~l~~Lr~L~l~~~~--~~--~lp~~i~~ 579 (780)
...++|.+.++ .+.. ++... .+++|+.|++++|.+....+. .+...+++|+.|++++|. ++ .++..+..
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 209 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence 36899999887 3433 33333 789999999999986543322 233467899999999987 32 12233456
Q ss_pred CCCCCEEEccCcc-CCC-cccccccCCCcEEEeecC
Q 037947 580 LINLQTLSFECCV-LGD-VATVGALKKLVILSFRNS 613 (780)
Q Consensus 580 l~~L~~L~L~~~~-~~~-~~~i~~l~~L~~L~l~~~ 613 (780)
+++|++|++++|. +.. +..+..+++|+.|++..+
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 7999999999983 333 456677888888886544
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.07 E-value=6.3e-10 Score=105.25 Aligned_cols=100 Identities=24% Similarity=0.372 Sum_probs=62.6
Q ss_pred cEEEecCCCCCCCCccccCCCCCCEEEccCccCCC--cccccccCCCcEEEeecCCCCccChh-hcCCCCCCEEecCCCC
Q 037947 561 QVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGD--VATVGALKKLVILSFRNSHIEQLPEE-IGQLTRLKLLDLSNCS 637 (780)
Q Consensus 561 r~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~~ 637 (780)
+.++++++.++.+|..+. .+|++|+|++|.+.. +..++.+.+|++|+|++|.+..+|.. +..+++|++|++++ +
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-N 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-C
Confidence 456666666666665553 566666666666655 33466666666666666666666654 35666666776666 5
Q ss_pred CCcccCccccCCCcccceeeccCCCC
Q 037947 638 KLKSIRPNVISNLPRLEELYMGNSFT 663 (780)
Q Consensus 638 ~l~~~~~~~l~~l~~L~~L~l~~~~~ 663 (780)
.++.+++..+..+++|++|++++|.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 66666655566666666666666643
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.07 E-value=6.3e-10 Score=104.87 Aligned_cols=101 Identities=24% Similarity=0.327 Sum_probs=69.6
Q ss_pred ccEEEecCCCCCCCCccccCCCCCCEEEccCccCCC--cccccccCCCcEEEeecCCCCccChh-hcCCCCCCEEecCCC
Q 037947 560 LQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGD--VATVGALKKLVILSFRNSHIEQLPEE-IGQLTRLKLLDLSNC 636 (780)
Q Consensus 560 Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~l~~L~~L~l~~~ 636 (780)
.+.++++++.++.+|..+. .+|++|+|++|.+.. +..+..+.+|++|++++|.+..+|.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~- 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND- 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-
Confidence 4567777777777776553 667777777777666 34567777777777777777777664 36777777777777
Q ss_pred CCCcccCccccCCCcccceeeccCCCC
Q 037947 637 SKLKSIRPNVISNLPRLEELYMGNSFT 663 (780)
Q Consensus 637 ~~l~~~~~~~l~~l~~L~~L~l~~~~~ 663 (780)
+.++.+++..+..+++|++|++++|.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 567777666667777777777777644
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.07 E-value=4e-12 Score=123.55 Aligned_cols=141 Identities=20% Similarity=0.247 Sum_probs=114.7
Q ss_pred ceEEEccCC--CCccCCCc-cCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEcc
Q 037947 513 PIAISLPCR--DIQELPER-LECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFE 589 (780)
Q Consensus 513 ~~~l~l~~~--~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 589 (780)
++...+.+. .++.+|.. ..+++|+.|++++|.+.. +| .+..+++|++|++++|.++.+|..+..+++|++|+++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc
Confidence 455555543 45555533 378999999999998875 66 3578999999999999999999988889999999999
Q ss_pred CccCCCcccccccCCCcEEEeecCCCCccCh--hhcCCCCCCEEecCCCCCCcccCcc----------ccCCCcccceee
Q 037947 590 CCVLGDVATVGALKKLVILSFRNSHIEQLPE--EIGQLTRLKLLDLSNCSKLKSIRPN----------VISNLPRLEELY 657 (780)
Q Consensus 590 ~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~~~~~----------~l~~l~~L~~L~ 657 (780)
+|.+..++.++.+++|++|++++|.+..+|. .+..+++|++|++++ +.+...+|. .+..+++|+.|+
T Consensus 102 ~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 102 YNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG-NPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS-CHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC-CccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999997789999999999999999998875 789999999999998 455444332 256677777776
No 151
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.06 E-value=9.7e-10 Score=115.59 Aligned_cols=191 Identities=15% Similarity=0.117 Sum_probs=118.8
Q ss_pred ccCCccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHH
Q 037947 146 HLRGYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAG 225 (780)
Q Consensus 146 ~~~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 225 (780)
.+.....++|++..++.+.+++..++.+.+.++|++|+||||+|+.+++...........++++.+...+...+ +++++
T Consensus 16 ~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~ 94 (323)
T 1sxj_B 16 RPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIK 94 (323)
T ss_dssp CCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHH
T ss_pred CCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHH
Confidence 34456779999999999999998776666999999999999999999988643211112344444333232222 11221
Q ss_pred HcCCCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEecchhHH-hh
Q 037947 226 ALGLFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL-YN 301 (780)
Q Consensus 226 ~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~-~~ 301 (780)
.+.... ..+ .+++.++|+||++... .++.+...+ .....++.+|+||+..... ..
T Consensus 95 ~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~l-------e~~~~~~~~il~~~~~~~l~~~ 153 (323)
T 1sxj_B 95 HFAQKK--------------LHLPPGKHKIVILDEADSMTAGAQQALRRTM-------ELYSNSTRFAFACNQSNKIIEP 153 (323)
T ss_dssp HHHHBC--------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHH-------HHTTTTEEEEEEESCGGGSCHH
T ss_pred HHHhcc--------------ccCCCCCceEEEEECcccCCHHHHHHHHHHH-------hccCCCceEEEEeCChhhchhH
Confidence 111000 001 3468899999997653 222222222 3344567888888764321 22
Q ss_pred hcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHH-HHHHHH
Q 037947 302 EMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVA-ITTVAT 359 (780)
Q Consensus 302 ~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa-i~~~~~ 359 (780)
.......+++.+++.++..+++...+..... .--.+..+.|++.|+|.|.. +..+..
T Consensus 154 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 154 LQSQCAILRYSKLSDEDVLKRLLQIIKLEDV-KYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhceEEeecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2334558999999999999999887642111 11236778999999999954 444433
No 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.91 E-value=4.9e-09 Score=99.11 Aligned_cols=102 Identities=25% Similarity=0.333 Sum_probs=77.8
Q ss_pred cEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC-CccccCCCCCCEEEccCccCCC-ccc-ccccCCCcEEEeec
Q 037947 536 KLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGCLINLQTLSFECCVLGD-VAT-VGALKKLVILSFRN 612 (780)
Q Consensus 536 ~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~-~~~-i~~l~~L~~L~l~~ 612 (780)
+.++++++.+. .+|..+ .+.|++|+|++|.++.+ |..+..+++|++|+|++|.+.. ++. +.++.+|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56677777664 566644 26788888888888876 5577888888888888888877 333 57888888888888
Q ss_pred CCCCccChh-hcCCCCCCEEecCCCCCCccc
Q 037947 613 SHIEQLPEE-IGQLTRLKLLDLSNCSKLKSI 642 (780)
Q Consensus 613 ~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~~ 642 (780)
|.+..+|.. +..+++|++|++++ +.+...
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~-N~~~c~ 120 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYN-NPWDCE 120 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCS-SCBCTT
T ss_pred CccceeCHHHhccccCCCEEEeCC-CCcccc
Confidence 888888875 78888899999888 555544
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=4.4e-09 Score=110.69 Aligned_cols=190 Identities=13% Similarity=0.072 Sum_probs=117.9
Q ss_pred cCCccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 147 LRGYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
+.....++|++..++.+.+++..++.+.+.++|++|+||||+|+.+++.......-...+.++.+....... .+.
T Consensus 21 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~---- 95 (327)
T 1iqp_A 21 PQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINV-IRE---- 95 (327)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHT-THH----
T ss_pred CCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHH-HHH----
Confidence 345567999999999999999877766799999999999999999998864321101123333222111110 000
Q ss_pred cCCCcCCCCCHHHHHHHHHHH--h-ccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEecchhHH-h
Q 037947 227 LGLFLGEHEDVSERAHLLRQR--L-KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL-Y 300 (780)
Q Consensus 227 l~~~~~~~~~~~~~~~~l~~~--L-~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~-~ 300 (780)
........ + .+++.++|+||++... .++.+...+ .....++++|+||...... .
T Consensus 96 -------------~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~l-------e~~~~~~~~i~~~~~~~~l~~ 155 (327)
T 1iqp_A 96 -------------KVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTM-------EMFSSNVRFILSCNYSSKIIE 155 (327)
T ss_dssp -------------HHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHH-------HHTTTTEEEEEEESCGGGSCH
T ss_pred -------------HHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHH-------HhcCCCCeEEEEeCCccccCH
Confidence 01111110 1 2568899999997652 233332222 3334567888888765321 1
Q ss_pred hhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHHh
Q 037947 301 NEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATALR 362 (780)
Q Consensus 301 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~ 362 (780)
........+++.+++.++..+++...+..... .--.+..+.|++.++|.|..+..+...+.
T Consensus 156 ~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 156 PIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-ELTEEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp HHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC-EECHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 11223457999999999999999887642221 12236778899999999987665554443
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.84 E-value=1.8e-08 Score=94.85 Aligned_cols=102 Identities=23% Similarity=0.263 Sum_probs=74.3
Q ss_pred ccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC-CccccCCCCCCEEEccCccCCC-cc-cccccCCCcEEEee
Q 037947 535 LKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTLGCLINLQTLSFECCVLGD-VA-TVGALKKLVILSFR 611 (780)
Q Consensus 535 L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~~~~-~~-~i~~l~~L~~L~l~ 611 (780)
.+.+++++|.+. .+|..+ .+.|++|+|++|.++.+ |..+..+++|++|+|++|.+.. ++ .+..+.+|++|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 456666666655 456544 36778888888888776 5567788888888888888777 33 35788888888888
Q ss_pred cCCCCccChh-hcCCCCCCEEecCCCCCCcc
Q 037947 612 NSHIEQLPEE-IGQLTRLKLLDLSNCSKLKS 641 (780)
Q Consensus 612 ~~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~ 641 (780)
+|.+..+|.. +..+++|++|++++ +.+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~-N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLN-NPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCS-SCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCC-CCCCC
Confidence 8888888764 77888888888887 44443
No 155
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.76 E-value=6.7e-08 Score=101.17 Aligned_cols=188 Identities=12% Similarity=0.094 Sum_probs=115.7
Q ss_pred cCCccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 147 LRGYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
+....+++|++..++.+.+++..++.+.+.++|++|+|||++|+.+++.......-...+.++.+.......
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-------- 84 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDV-------- 84 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTT--------
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHH--------
Confidence 344567899999999999998876665699999999999999999998763221101123333332211110
Q ss_pred cCCCcCCCCCHHHHHHHHHHH--h-ccCcEEEEEeCCCCccc--cccccCCcccccccccCCCCCcEEEEEecchhH-Hh
Q 037947 227 LGLFLGEHEDVSERAHLLRQR--L-KASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDL-LY 300 (780)
Q Consensus 227 l~~~~~~~~~~~~~~~~l~~~--L-~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v-~~ 300 (780)
..+........ + .+++.++|+|+++.... .+.+...+ .....++.+|+||....- ..
T Consensus 85 ----------~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~l-------e~~~~~~~~i~~~~~~~~l~~ 147 (319)
T 2chq_A 85 ----------VRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTM-------EMYSKSCRFILSCNYVSRIIE 147 (319)
T ss_dssp ----------SSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGT-------SSSSSSEEEEEEESCGGGSCH
T ss_pred ----------HHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHH-------HhcCCCCeEEEEeCChhhcch
Confidence 11111111111 1 25678999999976532 22332222 333456778888766542 12
Q ss_pred hhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHH
Q 037947 301 NEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATA 360 (780)
Q Consensus 301 ~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 360 (780)
........+++.+++.++..+++...+..... .--.+..+.+++.++|.+..+......
T Consensus 148 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l~~ 206 (319)
T 2chq_A 148 PIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV-KITEDGLEALIYISGGDFRKAINALQG 206 (319)
T ss_dssp HHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC-CBCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 22334458999999999999999887643221 122466788899999999865544433
No 156
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.76 E-value=1.5e-07 Score=96.58 Aligned_cols=173 Identities=12% Similarity=0.091 Sum_probs=106.1
Q ss_pred ccCCchHHHHHHHHHHc----cCCccEEEEEcCCCChHHHHHHHHHHHHhccCC---CC--eEEEEEEccCCCHHHHHHH
Q 037947 152 QFESRMPTFQDIMEALK----DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKL---FD--EVVMVVVSQKPDYKAIQNE 222 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---F~--~~~wv~vs~~~~~~~~~~~ 222 (780)
.+.||++++++|...|. ....+.+.|+|++|+|||++|+.|++....... .. ..+++++....+...+...
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 36799999999987775 567788999999999999999999998854321 11 2456666677788899999
Q ss_pred HHHHcCCCcCCCCCHHHHHHHHHHHh---ccCcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhHH
Q 037947 223 IAGALGLFLGEHEDVSERAHLLRQRL---KASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL 299 (780)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~~l~~~L---~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~ 299 (780)
|.+++...........+....+.+.+ .+++++++||+++...+-+.+...+.+ .........||.++...+..
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~----~~~~~s~~~vI~i~n~~d~~ 176 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKW----ISSKNSKLSIICVGGHNVTI 176 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHH----HHCSSCCEEEEEECCSSCCC
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhc----ccccCCcEEEEEEecCcccc
Confidence 99999543211111223334444443 457899999999776522212111100 00111122344445443221
Q ss_pred hh-------hcCCcceEEcCCCChHHHHHHHHHhhC
Q 037947 300 YN-------EMNSQKNFLINVLSDQEAVQLFEKMSG 328 (780)
Q Consensus 300 ~~-------~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 328 (780)
.. +.-....+.++|++.++-.+++.+++.
T Consensus 177 ~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 177 REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 10 011125789999999999999988874
No 157
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.71 E-value=5.6e-08 Score=102.31 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=33.8
Q ss_pred CCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCC-ccccCCCCCCEEEccC
Q 037947 532 CPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP-STLGCLINLQTLSFEC 590 (780)
Q Consensus 532 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~ 590 (780)
|++|+.|.+.. .+. .+++..|.++++|+.|++..+.+..++ ..+..+.++.++.+..
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 67777777766 333 466666677777777777777665543 3444555555555443
No 158
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=5.4e-08 Score=103.32 Aligned_cols=96 Identities=21% Similarity=0.131 Sum_probs=59.3
Q ss_pred EEEeccC-ccccccCchhhcCCCCccEEEecC-CCCCCCC-ccccCCCCCCEEEccCccCCC--cccccccCCCcEEEee
Q 037947 537 LFFLFSK-KLSLVIPDLFFEGVPSLQVLSLNG-FHFPSLP-STLGCLINLQTLSFECCVLGD--VATVGALKKLVILSFR 611 (780)
Q Consensus 537 ~L~l~~~-~~~~~~~~~~~~~l~~Lr~L~l~~-~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~ 611 (780)
.++++++ .+. .+|. +..++.|+.|+|++ |.++.+| ..++.|.+|++|+|++|.+.. +..+++|.+|++|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3455555 443 4565 45666677777764 6666654 456667777777777776665 3345667777777777
Q ss_pred cCCCCccChhhcCCCCCCEEecCC
Q 037947 612 NSHIEQLPEEIGQLTRLKLLDLSN 635 (780)
Q Consensus 612 ~~~l~~lp~~i~~l~~L~~L~l~~ 635 (780)
+|.+..+|..+.....|+.|++.+
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSG 112 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCS
T ss_pred CCccceeCHHHcccCCceEEEeeC
Confidence 776666666544443467776666
No 159
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.68 E-value=1.9e-07 Score=98.00 Aligned_cols=186 Identities=12% Similarity=0.141 Sum_probs=109.5
Q ss_pred CccccCCchHHHHHHHHHHc-----cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHH
Q 037947 149 GYEQFESRMPTFQDIMEALK-----DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEI 223 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~-----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i 223 (780)
....++|++..++.+..++. ......|.|+|++|+|||++|+.+++.... ..++++.+......++...+
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~~~l 84 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLAAIL 84 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHHHHH
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHHHHH
Confidence 45679999999888888775 234467899999999999999999987632 23344443332222222111
Q ss_pred HHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc--cccccCCccccc-c----------cccCCCCCcEEE
Q 037947 224 AGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD--LDAVGIPYKNYQ-N----------EIKDDRRRCAML 290 (780)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~-~----------~l~~~~~~s~ii 290 (780)
... ..+..+|+|||+..... ...+...+.... . .+.....+..+|
T Consensus 85 ---------------------~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 85 ---------------------ANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp ---------------------TTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred ---------------------HHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 100 12456888888866531 111111110000 0 000011245677
Q ss_pred EEecchhHH-hhhcCCc-ceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHHHHh
Q 037947 291 LTSRRKDLL-YNEMNSQ-KNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVATALR 362 (780)
Q Consensus 291 vTtr~~~v~-~~~~~~~-~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~~L~ 362 (780)
.||...... ....... ..+.+.+++.++..+++...+.... ..--.+..+.+++.++|.|..+..+...+.
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 215 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-VRITEEAALEIGRRSRGTMRVAKRLFRRVR 215 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-CCCCHHHHHHHHHHSCSCHHHHHHHHHHHT
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 776654321 1111222 5799999999999999988774322 122346788999999999988877766553
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.63 E-value=3e-07 Score=98.53 Aligned_cols=196 Identities=12% Similarity=0.101 Sum_probs=113.1
Q ss_pred CCccccCCchHHHHHHHHHHccCC-ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDN-INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
.....++|++..++.+..++..++ ...+.|+|++|+||||+|+.+++.......+.. ..+... . ....+...
T Consensus 13 ~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~---~~~~~~---~-~~~~~~~~ 85 (373)
T 1jr3_A 13 QTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA---TPCGVC---D-NCREIEQG 85 (373)
T ss_dssp CSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS---SCCSSS---H-HHHHHHTS
T ss_pred CchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC---CCCccc---H-HHHHHhcc
Confidence 345568999999999999987654 457899999999999999999987643221110 000000 0 01111110
Q ss_pred cCCC-----cCCCCCHHHHHHHHHHHh-----ccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEec
Q 037947 227 LGLF-----LGEHEDVSERAHLLRQRL-----KASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSR 294 (780)
Q Consensus 227 l~~~-----~~~~~~~~~~~~~l~~~L-----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr 294 (780)
-... ....... +....+.+.+ .+++.++|+||++... ..+.+...+ .....+..+|++|.
T Consensus 86 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~l-------e~~~~~~~~Il~~~ 157 (373)
T 1jr3_A 86 RFVDLIEIDAASRTKV-EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL-------EEPPEHVKFLLATT 157 (373)
T ss_dssp CCSSCEEEETTCSCCS-SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHH-------HSCCSSEEEEEEES
T ss_pred CCCceEEecccccCCH-HHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHH-------hcCCCceEEEEEeC
Confidence 0000 0000000 1122233333 2467899999996652 222232222 33344667777776
Q ss_pred chhH-HhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHH
Q 037947 295 RKDL-LYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVAT 359 (780)
Q Consensus 295 ~~~v-~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 359 (780)
...- ..........+++.+++.++..+++.+.+..... .--.+..+.|++.++|.|..+..+..
T Consensus 158 ~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~-~~~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 158 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHEPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CBCHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred ChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 5432 1222334568999999999999999876632111 11235678899999999998766543
No 161
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.63 E-value=9.3e-08 Score=91.73 Aligned_cols=160 Identities=13% Similarity=0.171 Sum_probs=88.3
Q ss_pred CccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCC-----CCeEEEEEEccCCCHHHHHHHH
Q 037947 149 GYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKL-----FDEVVMVVVSQKPDYKAIQNEI 223 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~~~~~i 223 (780)
....++||+++++++.+++.....+.+.|+|++|+|||++|+.+++....... ....++++++. +.
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~--- 90 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------LV--- 90 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------HH---
T ss_pred cccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------Hh---
Confidence 35678999999999999998777778899999999999999999988643211 12234443321 10
Q ss_pred HHHcCCCcCCCCCHHHHHHHHHHHh--ccCcEEEEEeCCCCccccc--cccCCcccccccccCCCCCcEEEEEecchhHH
Q 037947 224 AGALGLFLGEHEDVSERAHLLRQRL--KASRVLVILDDVWNRLDLD--AVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL 299 (780)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVlDdv~~~~~~~--~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~ 299 (780)
... ............+.+.+ .+++.+|||||++....-. .....+..++..+. ...+..+|+||......
T Consensus 91 ----~~~-~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~~~~~~ 164 (195)
T 1jbk_A 91 ----AGA-KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL-ARGELHCVGATTLDEYR 164 (195)
T ss_dssp ----TTT-CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH-HTTSCCEEEEECHHHHH
T ss_pred ----ccC-CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh-ccCCeEEEEeCCHHHHH
Confidence 000 00000111222222222 3467899999997652100 00000011111111 12345677777665421
Q ss_pred ------hhhcCCcceEEcCCCChHHHHHHH
Q 037947 300 ------YNEMNSQKNFLINVLSDQEAVQLF 323 (780)
Q Consensus 300 ------~~~~~~~~~~~l~~L~~~~~~~Lf 323 (780)
.........+.+++++.++..+++
T Consensus 165 ~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 165 QYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 112233346889999988876653
No 162
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.60 E-value=1.8e-07 Score=98.35 Aligned_cols=153 Identities=15% Similarity=0.189 Sum_probs=88.0
Q ss_pred ccCchhhcC--------CCCccEEEecCCCCCCCC-ccccCCCCCCEEEccCccCCC--cccccccCCCcEEEeecCC--
Q 037947 548 VIPDLFFEG--------VPSLQVLSLNGFHFPSLP-STLGCLINLQTLSFECCVLGD--VATVGALKKLVILSFRNSH-- 614 (780)
Q Consensus 548 ~~~~~~~~~--------l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~L~l~~~~-- 614 (780)
.+|...|.+ ++.|+.|+|.. .++.++ ..+..+.+|+.|+++.|.+.. ...+..+.++..+....+.
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~ 161 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY 161 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh
Confidence 466677778 89999999988 787775 467889999999999887654 2334444445444433210
Q ss_pred -------------------------CCccChhh----------------------------cCCCCCCEEecCCCCCCcc
Q 037947 615 -------------------------IEQLPEEI----------------------------GQLTRLKLLDLSNCSKLKS 641 (780)
Q Consensus 615 -------------------------l~~lp~~i----------------------------~~l~~L~~L~l~~~~~l~~ 641 (780)
...+|..+ ..+++|+.|++++ +.++.
T Consensus 162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~-n~i~~ 240 (329)
T 3sb4_A 162 RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK-TNATT 240 (329)
T ss_dssp HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT-BCCCE
T ss_pred hccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCC-CCcce
Confidence 00111100 0256666777665 45666
Q ss_pred cCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCC-EEEeeccCCCCCCccc--cccCccEEEE
Q 037947 642 IRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLT-TLEMHILDAQVMPREL--FSVGLERYKI 711 (780)
Q Consensus 642 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~-~L~l~~~~~~~~~~~~--~~~~L~~L~i 711 (780)
+++..+..+++|+.|.+.+|.. .++ -..+.++.+|+ .+.+.. .+..++... .+++|+.+.+
T Consensus 241 I~~~aF~~~~~L~~l~l~~ni~--~I~------~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 241 IPDFTFAQKKYLLKIKLPHNLK--TIG------QRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp ECTTTTTTCTTCCEEECCTTCC--EEC------TTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred ecHhhhhCCCCCCEEECCcccc--eeh------HHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 6666666666677776665511 111 13355566666 666654 444444333 4455555555
No 163
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.55 E-value=1.3e-08 Score=108.55 Aligned_cols=124 Identities=14% Similarity=0.065 Sum_probs=54.9
Q ss_pred CceEEEccCCCCccCC-----Ccc--CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCC-Cccc-----c
Q 037947 512 DPIAISLPCRDIQELP-----ERL--ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSL-PSTL-----G 578 (780)
Q Consensus 512 ~~~~l~l~~~~~~~~~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~l-p~~i-----~ 578 (780)
.++.|.+.+|.+.... ... .+++|+.|++++|.+.......+...+++|+.|+|++|.++.. ...+ .
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~ 152 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLH 152 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHS
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHh
Confidence 3566666666554321 110 2245555555555544322222222334555555555555421 1111 1
Q ss_pred CCCCCCEEEccCccCCC------cccccccCCCcEEEeecCCCCc-----cChhhcCCCCCCEEecCC
Q 037947 579 CLINLQTLSFECCVLGD------VATVGALKKLVILSFRNSHIEQ-----LPEEIGQLTRLKLLDLSN 635 (780)
Q Consensus 579 ~l~~L~~L~L~~~~~~~------~~~i~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~ 635 (780)
..++|++|+|++|.++. ...+..+++|++|+|++|.+.. ++..+...++|++|++++
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 23445555555555433 1222344555555555554432 233344444555555554
No 164
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.51 E-value=3.6e-07 Score=97.16 Aligned_cols=198 Identities=12% Similarity=0.113 Sum_probs=114.9
Q ss_pred ccCCccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCC-eEEEEEEccCCCHHHHHHHHH
Q 037947 146 HLRGYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFD-EVVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 146 ~~~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~i~ 224 (780)
.+.....++|+++.++.+..++.....+.+.++|++|+||||+|+.+++.......+. ....++.+.......+.. ..
T Consensus 32 ~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 110 (353)
T 1sxj_D 32 RPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVRE-KV 110 (353)
T ss_dssp CCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTT-HH
T ss_pred CCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHH-HH
Confidence 3445677899999999999999876555589999999999999999998754211111 233344443333332222 11
Q ss_pred HHcC-CCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCccc--cccccCCcccccccccCCCCCcEEEEEecchh-HH
Q 037947 225 GALG-LFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKD-LL 299 (780)
Q Consensus 225 ~~l~-~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~-v~ 299 (780)
..+. ......... ..... .+++-+|++|++..... ...+...+ .......++|++|.... +.
T Consensus 111 ~~~~~~~~~~~~~~------~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~l-------e~~~~~~~~il~~~~~~~l~ 177 (353)
T 1sxj_D 111 KNFARLTVSKPSKH------DLENYPCPPYKIIILDEADSMTADAQSALRRTM-------ETYSGVTRFCLICNYVTRII 177 (353)
T ss_dssp HHHHHSCCCCCCTT------HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHH-------HHTTTTEEEEEEESCGGGSC
T ss_pred HHHhhhcccccchh------hcccCCCCCceEEEEECCCccCHHHHHHHHHHH-------HhcCCCceEEEEeCchhhCc
Confidence 1111 000000000 00011 23556999999865521 22222222 23334567777775543 21
Q ss_pred hhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHH
Q 037947 300 YNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVA 358 (780)
Q Consensus 300 ~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 358 (780)
.........+++.+++.++..+.+...+..... .--.+..+.|++.++|.|..+..+.
T Consensus 178 ~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 178 DPLASQCSKFRFKALDASNAIDRLRFISEQENV-KCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp HHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred chhhccCceEEeCCCCHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 111223347899999999999999887642211 1224678899999999998755443
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.50 E-value=3e-07 Score=97.46 Aligned_cols=101 Identities=11% Similarity=0.077 Sum_probs=69.6
Q ss_pred EEEccCC-CCccCCCccCCCCccEEEecc-CccccccCchhhcCCCCccEEEecCCCCCCCC-ccccCCCCCCEEEccCc
Q 037947 515 AISLPCR-DIQELPERLECPKLKLFFLFS-KKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP-STLGCLINLQTLSFECC 591 (780)
Q Consensus 515 ~l~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~ 591 (780)
.+...++ .+..+|....+++|+.|+|++ |.+. .+|...|.++++|++|+|++|.++.+| ..+..|++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3455555 677777733677788888875 6665 455555677888888888888887654 46677888888888888
Q ss_pred cCCC-cccccccCCCcEEEeecCCCC
Q 037947 592 VLGD-VATVGALKKLVILSFRNSHIE 616 (780)
Q Consensus 592 ~~~~-~~~i~~l~~L~~L~l~~~~l~ 616 (780)
.+.. |+.+.....|++|+|.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 8776 333333333888888877665
No 166
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.47 E-value=3e-06 Score=92.10 Aligned_cols=181 Identities=18% Similarity=0.199 Sum_probs=110.1
Q ss_pred cCCccccCCchHHH---HHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC-CCHHHHHHH
Q 037947 147 LRGYEQFESRMPTF---QDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK-PDYKAIQNE 222 (780)
Q Consensus 147 ~~~~~~~~gr~~~~---~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~ 222 (780)
+.....++|.+..+ ..+...+.......+.++|++|+||||+|+.+++..... ++.++.. ....++ +.
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~-------f~~l~a~~~~~~~i-r~ 93 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD-------VERISAVTSGVKEI-RE 93 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE-------EEEEETTTCCHHHH-HH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC-------eEEEEeccCCHHHH-HH
Confidence 34567789998888 777788877777889999999999999999999876322 2333322 222222 22
Q ss_pred HHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEE-Eecchh--
Q 037947 223 IAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLL-TSRRKD-- 297 (780)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iiv-Ttr~~~-- 297 (780)
++... ......+++.+|+||++.... ..+.+.. .+.. ....+|. ||.+..
T Consensus 94 ~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~-------~le~--~~v~lI~att~n~~~~ 148 (447)
T 3pvs_A 94 AIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLP-------HIED--GTITFIGATTENPSFE 148 (447)
T ss_dssp HHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHH-------HHHT--TSCEEEEEESSCGGGS
T ss_pred HHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHH-------HHhc--CceEEEecCCCCcccc
Confidence 21110 011124678999999997653 2222221 1122 2234444 444432
Q ss_pred HHhhhcCCcceEEcCCCChHHHHHHHHHhhCCC------CCCCChhHHHHHHHHHhCCChHHHHHHHHH
Q 037947 298 LLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVF------EGPLDFQNLAIKIARECGGLPVAITTVATA 360 (780)
Q Consensus 298 v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~------~~~~~~~~~~~~i~~~c~GlPLai~~~~~~ 360 (780)
+..........+.+++++.++...++.+.+... ....--.+..+.|++.++|.+-.+..+...
T Consensus 149 l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~ 217 (447)
T 3pvs_A 149 LNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEM 217 (447)
T ss_dssp SCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred cCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 112233455689999999999999998876431 111223467788999999988766554443
No 167
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.47 E-value=4e-07 Score=90.90 Aligned_cols=176 Identities=13% Similarity=0.148 Sum_probs=104.6
Q ss_pred ccccCCc---hHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 150 YEQFESR---MPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 150 ~~~~~gr---~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
.+.|+|+ +..++.+..+...+..+.+.|+|++|+||||+|+.+++..... ...+.|++++..... +.+
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~~- 97 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------STA- 97 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CGG-
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HHH-
Confidence 4556663 3556666666655567889999999999999999999987654 334567766542110 000
Q ss_pred cCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc----cccccCCcccccccccCCCCCcEEEEEecchhHH---
Q 037947 227 LGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD----LDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL--- 299 (780)
Q Consensus 227 l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~----~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~--- 299 (780)
..+.+ .++.+||+||++.... .+.+...+ ..+. .....++|+||+...-.
T Consensus 98 -----------------~~~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l----~~~~-~~~~~~ii~~~~~~~~~~~~ 154 (242)
T 3bos_A 98 -----------------LLEGL-EQFDLICIDDVDAVAGHPLWEEAIFDLY----NRVA-EQKRGSLIVSASASPMEAGF 154 (242)
T ss_dssp -----------------GGTTG-GGSSEEEEETGGGGTTCHHHHHHHHHHH----HHHH-HHCSCEEEEEESSCTTTTTC
T ss_pred -----------------HHHhc-cCCCEEEEeccccccCCHHHHHHHHHHH----HHHH-HcCCCeEEEEcCCCHHHHHH
Confidence 00011 3467999999876532 11121111 0001 11122577777643210
Q ss_pred --hhhc---CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHH
Q 037947 300 --YNEM---NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVA 358 (780)
Q Consensus 300 --~~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 358 (780)
.... .....+++++++.++..+++...+.... ..--.+..+.+++.++|.+-.+..+.
T Consensus 155 ~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 155 VLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG-LQLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT-CCCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred hhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHccCCHHHHHHHH
Confidence 0011 1126799999999999999988764211 12234677889999999887665543
No 168
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.46 E-value=1.2e-08 Score=108.89 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=112.3
Q ss_pred CCCccEEEeccCccccccCch----hhcCCCCccEEEecCCCCCC--CCccccCCCCCCEEEccCccCCC--cccc----
Q 037947 532 CPKLKLFFLFSKKLSLVIPDL----FFEGVPSLQVLSLNGFHFPS--LPSTLGCLINLQTLSFECCVLGD--VATV---- 599 (780)
Q Consensus 532 ~~~L~~L~l~~~~~~~~~~~~----~~~~l~~Lr~L~l~~~~~~~--lp~~i~~l~~L~~L~L~~~~~~~--~~~i---- 599 (780)
.++++.|++++|.++...... +....+.|+.|+|++|.++. ...-...+.+|++|+|++|.++. ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467899999999876432221 11234789999999998863 22223346789999999999876 2333
Q ss_pred -cccCCCcEEEeecCCCCc-----cChhhcCCCCCCEEecCCCCCCcccC----ccccCCCcccceeeccCCCCcccccc
Q 037947 600 -GALKKLVILSFRNSHIEQ-----LPEEIGQLTRLKLLDLSNCSKLKSIR----PNVISNLPRLEELYMGNSFTHWEIEG 669 (780)
Q Consensus 600 -~~l~~L~~L~l~~~~l~~-----lp~~i~~l~~L~~L~l~~~~~l~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~ 669 (780)
....+|++|+|++|.++. ++..+..+++|++|++++ +.++... ...+...++|++|++++|.+....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~-N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g-- 227 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH-TGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTA-- 227 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT-SSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHH--
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC-CCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHH--
Confidence 246789999999998864 666778899999999998 5565432 233567789999999998542210
Q ss_pred CCccchhhhcCCCCCCEEEeeccCCCC
Q 037947 670 QNNASLAELNQLSRLTTLEMHILDAQV 696 (780)
Q Consensus 670 ~~~~~l~~l~~L~~L~~L~l~~~~~~~ 696 (780)
.......+...++|+.|++++|.+..
T Consensus 228 -~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 228 -ALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp -HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred -HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 11122345677889999999997654
No 169
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.45 E-value=6.7e-07 Score=95.06 Aligned_cols=200 Identities=10% Similarity=0.060 Sum_probs=110.1
Q ss_pred cCCccccCCchHHHHHHHHHH-ccCCccEEEEEcCCCChHHHHHHHHHHHHhccCC----CCe-----------------
Q 037947 147 LRGYEQFESRMPTFQDIMEAL-KDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKL----FDE----------------- 204 (780)
Q Consensus 147 ~~~~~~~~gr~~~~~~l~~~L-~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~----------------- 204 (780)
+.....++|++..++.+.+++ ..++.+.+.|+|+.|+||||+|+.++........ ++.
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 89 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS 89 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeec
Confidence 345567899999999999988 6555545999999999999999999986421110 110
Q ss_pred ---EEEEEEccCC-CHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc--cccccCCcccccc
Q 037947 205 ---VVMVVVSQKP-DYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD--LDAVGIPYKNYQN 278 (780)
Q Consensus 205 ---~~wv~vs~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~ 278 (780)
.+.+..+... ......++++..+.....-.. .. .+ .-+.+++-++|||++..... .+.+...+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~l----- 158 (354)
T 1sxj_E 90 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDF----QD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTM----- 158 (354)
T ss_dssp CSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHH-----
T ss_pred ccceEEecHhhcCCcchHHHHHHHHHHHHhccccc----cc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHH-----
Confidence 1111111100 000012222222211100000 00 00 00234677999999977421 12222111
Q ss_pred cccCCCCCcEEEEEecchh-HHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCCh-hHHHHHHHHHhCCChHHHHH
Q 037947 279 EIKDDRRRCAMLLTSRRKD-LLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDF-QNLAIKIARECGGLPVAITT 356 (780)
Q Consensus 279 ~l~~~~~~s~iivTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~-~~~~~~i~~~c~GlPLai~~ 356 (780)
.....++.+|++|.... +..........+++++++.++..+.+...+...... -- .+..+.|++.++|.+-.+..
T Consensus 159 --e~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~l~~i~~~~~G~~r~a~~ 235 (354)
T 1sxj_E 159 --EKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQ-LETKDILKRIAQASNGNLRVSLL 235 (354)
T ss_dssp --HHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCE-ECCSHHHHHHHHHHTTCHHHHHH
T ss_pred --HhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHcCCCHHHHHH
Confidence 22334677888776643 222223445789999999999999998876421111 11 25678899999999876655
Q ss_pred HHHH
Q 037947 357 VATA 360 (780)
Q Consensus 357 ~~~~ 360 (780)
+...
T Consensus 236 ~l~~ 239 (354)
T 1sxj_E 236 MLES 239 (354)
T ss_dssp HHTH
T ss_pred HHHH
Confidence 5433
No 170
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.44 E-value=2.2e-06 Score=92.24 Aligned_cols=211 Identities=12% Similarity=0.094 Sum_probs=120.1
Q ss_pred ceEEEccCCCCccCCCcc-CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCc
Q 037947 513 PIAISLPCRDIQELPERL-ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECC 591 (780)
Q Consensus 513 ~~~l~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 591 (780)
++.+.+..+ +..++... .-.+|+.+.+.. .. ..++...|.++++|+.+++..|.++.+|.......+|+.+.+..+
T Consensus 137 L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l-~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~ 213 (401)
T 4fdw_A 137 IAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TL-EQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT 213 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCCCCEEECCT-TC-CEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT
T ss_pred ccEEEeCCC-ccEECHHhcCCCCceEEEeCC-Cc-cEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc
Confidence 444554432 44444322 113566666654 22 245555667777788888877777777665555677777777644
Q ss_pred cCCC--cccccccCCCcEEEeecCCCCccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCcccccc
Q 037947 592 VLGD--VATVGALKKLVILSFRNSHIEQLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEG 669 (780)
Q Consensus 592 ~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 669 (780)
+.. ...+.++.+|+.+++..+ +..++...-.-.+|+.+.+.. .++.++...+..+++|+.+.+.++......
T Consensus 214 -l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~-- 287 (401)
T 4fdw_A 214 -LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDP-- 287 (401)
T ss_dssp -CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCT--
T ss_pred -hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCc--
Confidence 433 345667777777777653 566655433336777777753 566776667777788888877665332000
Q ss_pred CCccchhhhcCCCCCCEEEeeccCCCCCCccc--cccCccEEEEEecCc---ccccccccccceeEeecC
Q 037947 670 QNNASLAELNQLSRLTTLEMHILDAQVMPREL--FSVGLERYKIFLGDV---WSWTGKYETSRTLKLKLD 734 (780)
Q Consensus 670 ~~~~~l~~l~~L~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~i~~~~~---~~~~~~~~~l~~l~L~~~ 734 (780)
...-.-..+.++.+|+.+.+. +.+..++... .+.+|+.+.+...-. ...+..+ .++.+.+..+
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPANVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTTCCEECTTSSSSS-CCCEEEECCS
T ss_pred ccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECccccEEcHHhCCCC-CCCEEEEcCC
Confidence 000111345667777777776 3455555554 456777777732110 1223444 5666666443
No 171
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.39 E-value=9.8e-06 Score=82.40 Aligned_cols=205 Identities=16% Similarity=0.201 Sum_probs=107.3
Q ss_pred ccCCchHHHHHHHH-------HHc---cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHH
Q 037947 152 QFESRMPTFQDIME-------ALK---DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQN 221 (780)
Q Consensus 152 ~~~gr~~~~~~l~~-------~L~---~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 221 (780)
.++|....+++++. .+. ....+.+.|+|++|+|||++|+.+++.... . .+.++.+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~----~-~~~i~~~~~~------- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF----P-FIKICSPDKM------- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC----S-EEEEECGGGC-------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC----C-EEEEeCHHHh-------
Confidence 46677766666555 332 344578999999999999999999987432 2 1222322210
Q ss_pred HHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcccc--------ccccCCcccccccccCCCCCcEEEEEe
Q 037947 222 EIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLDL--------DAVGIPYKNYQNEIKDDRRRCAMLLTS 293 (780)
Q Consensus 222 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~--------~~l~~~~~~~~~~l~~~~~~s~iivTt 293 (780)
++.. ...........+......+..+|+|||++..... ..+...+...............||.||
T Consensus 102 -----~g~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~tt 174 (272)
T 1d2n_A 102 -----IGFS--ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT 174 (272)
T ss_dssp -----TTCC--HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEE
T ss_pred -----cCCc--hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEec
Confidence 0000 0000011112222233456889999998653110 001011101111111123344567777
Q ss_pred cchhHHhh--hcCC-cceEEcCCCCh-HHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCC------ChHHHHHHHHHHhC
Q 037947 294 RRKDLLYN--EMNS-QKNFLINVLSD-QEAVQLFEKMSGVFEGPLDFQNLAIKIARECGG------LPVAITTVATALRN 363 (780)
Q Consensus 294 r~~~v~~~--~~~~-~~~~~l~~L~~-~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G------lPLai~~~~~~L~~ 363 (780)
........ .... ...+.+++++. ++...++.+... -..+....|++.+.| .+-++..+-.....
T Consensus 175 n~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~------~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~ 248 (272)
T 1d2n_A 175 SRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN------FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQM 248 (272)
T ss_dssp SCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC------SCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTS
T ss_pred CChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC------CCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhh
Confidence 76644321 1222 45688999988 666666655321 123567888999988 34444444333333
Q ss_pred CChhHHHHHHHHHhcCCC
Q 037947 364 KSLFVWKDALLQLRSSNH 381 (780)
Q Consensus 364 ~~~~~w~~~~~~l~~~~~ 381 (780)
.+...+..+++.+.....
T Consensus 249 ~~~~~~~~~~~~l~~~~~ 266 (272)
T 1d2n_A 249 DPEYRVRKFLALLREEGA 266 (272)
T ss_dssp CGGGHHHHHHHHHHHTSC
T ss_pred chHHHHHHHHHHHHHcCC
Confidence 355677777777655443
No 172
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.37 E-value=4.8e-06 Score=85.41 Aligned_cols=186 Identities=17% Similarity=0.177 Sum_probs=103.7
Q ss_pred CccccCCchHHHHHHHHHHcc-------------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC
Q 037947 149 GYEQFESRMPTFQDIMEALKD-------------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD 215 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (780)
...+++|.++.++++.+.+.. ...+-+.|+|++|+|||++|+.+++..... .+.+..+.-.+
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~~~ 89 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSELVK 89 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGGCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHHHH
Confidence 456789999999998887642 345679999999999999999998875321 23333222110
Q ss_pred HHHHHHHHHHHcCCCcCCCCCHHHHHHHHHH-HhccCcEEEEEeCCCCccc---------cccccCCccccccccc--CC
Q 037947 216 YKAIQNEIAGALGLFLGEHEDVSERAHLLRQ-RLKASRVLVILDDVWNRLD---------LDAVGIPYKNYQNEIK--DD 283 (780)
Q Consensus 216 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~L~~kr~LlVlDdv~~~~~---------~~~l~~~~~~~~~~l~--~~ 283 (780)
..... .......+.. ....++.+|+|||++.... -......+..++..+. ..
T Consensus 90 --------------~~~~~--~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 153 (285)
T 3h4m_A 90 --------------KFIGE--GASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA 153 (285)
T ss_dssp --------------CSTTH--HHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS
T ss_pred --------------hccch--HHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC
Confidence 00000 1122222222 2344678999999965410 0000000000111111 22
Q ss_pred CCCcEEEEEecchhHHh-hhc---CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCC-ChHHHHHH
Q 037947 284 RRRCAMLLTSRRKDLLY-NEM---NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGG-LPVAITTV 357 (780)
Q Consensus 284 ~~~s~iivTtr~~~v~~-~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~ 357 (780)
..+..||.||....... ... .-...+.+++.+.++..+++...+........ .....+++.+.| .|-.+..+
T Consensus 154 ~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~~l 230 (285)
T 3h4m_A 154 RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCVGAELKAI 230 (285)
T ss_dssp SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCCHHHHHHH
T ss_pred CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCCHHHHHHH
Confidence 34567777887653321 111 12347899999999999999988763322211 124567777777 45444433
No 173
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.32 E-value=7e-06 Score=86.47 Aligned_cols=183 Identities=13% Similarity=0.204 Sum_probs=105.0
Q ss_pred CCccccCCchHHHHHHHHHHcc-----CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKD-----DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNE 222 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 222 (780)
....+++|++..++.+..++.. .....|.|+|++|+|||++|+.+++..... .+.++.+.......+. .
T Consensus 26 ~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~~~~~-~ 99 (338)
T 3pfi_A 26 SNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSAN-----IKTTAAPMIEKSGDLA-A 99 (338)
T ss_dssp CSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCC-----EEEEEGGGCCSHHHHH-H
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC-----eEEecchhccchhHHH-H
Confidence 3567799999999998888762 345678999999999999999998775321 2333333222111111 1
Q ss_pred HHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc--cccccCCccccc-----------ccccCCCCCcEE
Q 037947 223 IAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD--LDAVGIPYKNYQ-----------NEIKDDRRRCAM 289 (780)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~-----------~~l~~~~~~s~i 289 (780)
++ .. ..+..+|+||++..... ...+...+.... .......++..+
T Consensus 100 ~~--------------------~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 100 IL--------------------TN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp HH--------------------HT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred HH--------------------Hh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 11 10 23566888888865521 111111100000 000111123566
Q ss_pred EEEecchhHH-hhhcCC-cceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHHH
Q 037947 290 LLTSRRKDLL-YNEMNS-QKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVAT 359 (780)
Q Consensus 290 ivTtr~~~v~-~~~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~~ 359 (780)
|.+|...... ...... ...+.+++++.++..+++.+.+.... ..--.+..+.|++.+.|.|-.+..+..
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-KTCEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CEECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 6666654321 111222 36799999999999999988764221 112246778889999999965554433
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.31 E-value=3.4e-06 Score=94.13 Aligned_cols=203 Identities=12% Similarity=0.065 Sum_probs=112.2
Q ss_pred cccccccCCccccCCchHHHHHHHHHHcc-----------------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCC
Q 037947 141 WTETLHLRGYEQFESRMPTFQDIMEALKD-----------------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFD 203 (780)
Q Consensus 141 ~~~~~~~~~~~~~~gr~~~~~~l~~~L~~-----------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 203 (780)
|+....+....+++|++..++++.+++.. +..+.+.|+|++|+||||+|+.+++... +
T Consensus 29 W~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~- 103 (516)
T 1sxj_A 29 WTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y- 103 (516)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-
T ss_pred cccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-
Confidence 33333445567899999999999999864 1347899999999999999999998762 2
Q ss_pred eEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHH--hccCcEEEEEeCCCCccccccccCCccccccccc
Q 037947 204 EVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQR--LKASRVLVILDDVWNRLDLDAVGIPYKNYQNEIK 281 (780)
Q Consensus 204 ~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~ 281 (780)
..+.++.+...+.. +....+........... ......+. ..+++.+|++|+++....-.. ..+..+...+.
T Consensus 104 ~~i~in~s~~~~~~-~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~vliIDEid~l~~~~~--~~l~~L~~~l~ 176 (516)
T 1sxj_A 104 DILEQNASDVRSKT-LLNAGVKNALDNMSVVG----YFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR--GGVGQLAQFCR 176 (516)
T ss_dssp EEEEECTTSCCCHH-HHHHTGGGGTTBCCSTT----TTTC----CCSSTTSEEEEECSGGGCCTTST--THHHHHHHHHH
T ss_pred CEEEEeCCCcchHH-HHHHHHHHHhccccHHH----HHhhhhhhhhccCCCeEEEEECCCccchhhH--HHHHHHHHHHH
Confidence 23445555544433 22222222211100000 00000001 135788999999976532110 00000111111
Q ss_pred CCCCCcEEEEEecchhH--HhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChH-HHHHHH
Q 037947 282 DDRRRCAMLLTSRRKDL--LYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPV-AITTVA 358 (780)
Q Consensus 282 ~~~~~s~iivTtr~~~v--~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 358 (780)
. .+..||+++..... ..........+++++++.++..+.+...+..... .--.+....|++.++|.+- ++..+.
T Consensus 177 -~-~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~-~i~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 177 -K-TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF-KLDPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp -H-CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CCCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred -h-cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 1 23346665554321 1112233457999999999999998876642111 0112457789999999554 444443
No 175
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.31 E-value=1.6e-05 Score=80.36 Aligned_cols=188 Identities=15% Similarity=0.174 Sum_probs=97.9
Q ss_pred ccccCCchHHHHHHHHHHc---c---------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHH
Q 037947 150 YEQFESRMPTFQDIMEALK---D---------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYK 217 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 217 (780)
..+++|.+..++.+.+++. . ...+-|.|+|++|+|||++|+.+++..... .+.++.+.-.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVP-----FLAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEechHHHHhh-
Confidence 4567888877776655442 1 234568899999999999999999876321 233443332110
Q ss_pred HHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccccc----------cccCCcccccccccC--CCC
Q 037947 218 AIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLDLD----------AVGIPYKNYQNEIKD--DRR 285 (780)
Q Consensus 218 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~----------~l~~~~~~~~~~l~~--~~~ 285 (780)
... .........+.......+.+|+|||++....-. .....+..++..+.. ...
T Consensus 79 -------------~~~-~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 -------------IGG-LGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------------STT-HHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------------ccC-hhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 000 001111222222333467899999997651100 000000011111111 223
Q ss_pred CcEEEEEecchhHHhh-hcC---CcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChH-HHHHH
Q 037947 286 RCAMLLTSRRKDLLYN-EMN---SQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPV-AITTV 357 (780)
Q Consensus 286 ~s~iivTtr~~~v~~~-~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~ 357 (780)
+..||.||........ ... -...+.+++.+.++-.+++...+...............+++.+.|.+- .|..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 5566777765442211 111 235788999999999999988765322222222334678888887654 44433
No 176
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.30 E-value=3.8e-06 Score=87.95 Aligned_cols=191 Identities=8% Similarity=0.034 Sum_probs=108.6
Q ss_pred CcccccccCCccccCCchHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHH
Q 037947 140 EWTETLHLRGYEQFESRMPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKA 218 (780)
Q Consensus 140 ~~~~~~~~~~~~~~~gr~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 218 (780)
++.....+.....++|++..++.+.+++..... .++.+.|++|+|||++|+.+++.... ..+.++.+.. ....
T Consensus 15 ~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~-~~~~ 88 (324)
T 3u61_B 15 ILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDC-KIDF 88 (324)
T ss_dssp SHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTC-CHHH
T ss_pred hHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEccccc-CHHH
Confidence 344444445667899999999999999986554 67788888999999999999887631 2344444332 2222
Q ss_pred HHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcc---ccccccCCcccccccccCCCCCcEEEEEecc
Q 037947 219 IQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRL---DLDAVGIPYKNYQNEIKDDRRRCAMLLTSRR 295 (780)
Q Consensus 219 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~---~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~ 295 (780)
.+.++....... ...+++.++++||++... ..+.+...+ .....+..+|+||..
T Consensus 89 -i~~~~~~~~~~~---------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~l-------e~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 89 -VRGPLTNFASAA---------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFM-------EAYSSNCSIIITANN 145 (324)
T ss_dssp -HHTHHHHHHHBC---------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHH-------HHHGGGCEEEEEESS
T ss_pred -HHHHHHHHHhhc---------------ccCCCCeEEEEECCcccCcHHHHHHHHHHH-------HhCCCCcEEEEEeCC
Confidence 222111110000 012367899999997764 222222111 222345678888776
Q ss_pred hhHH-hhhcCCcceEEcCCCChHHHHHHHHH-------hhCCCCCCCChh-HHHHHHHHHhCCChHHHHHHHHH
Q 037947 296 KDLL-YNEMNSQKNFLINVLSDQEAVQLFEK-------MSGVFEGPLDFQ-NLAIKIARECGGLPVAITTVATA 360 (780)
Q Consensus 296 ~~v~-~~~~~~~~~~~l~~L~~~~~~~Lf~~-------~~~~~~~~~~~~-~~~~~i~~~c~GlPLai~~~~~~ 360 (780)
..-. .........+++++++.++-.+++.. .+.... ..-.. +..+.|++.++|.+-.+......
T Consensus 146 ~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~-~~~~~~~~~~~l~~~~~gd~R~a~~~L~~ 218 (324)
T 3u61_B 146 IDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEG-IAIADMKVVAALVKKNFPDFRKTIGELDS 218 (324)
T ss_dssp GGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT-CCBSCHHHHHHHHHHTCSCTTHHHHHHHH
T ss_pred ccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5421 11112235799999998885433322 221111 11112 67778888898877654443333
No 177
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.28 E-value=1.4e-05 Score=86.06 Aligned_cols=213 Identities=11% Similarity=0.101 Sum_probs=125.5
Q ss_pred CccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCC-ccccCCCCCCEEEccCccCCC-cccccccCCCcEEEee
Q 037947 534 KLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP-STLGCLINLQTLSFECCVLGD-VATVGALKKLVILSFR 611 (780)
Q Consensus 534 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~l~ 611 (780)
+|+.+.+..+ + ..++...|.++ .|+.+.+.. .++.++ ..+..+.+|+.+++..|.+.. +...-...+|+.+.+.
T Consensus 136 ~L~~i~l~~~-i-~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-L-KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-C-CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-c-cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 6777776655 2 24555556553 577777764 555553 456677778888887777665 2222234677777776
Q ss_pred cCCCCccCh-hhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEee
Q 037947 612 NSHIEQLPE-EIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMH 690 (780)
Q Consensus 612 ~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~ 690 (780)
.+ ++.++. .+..+++|+.+.+.. +++.++...+.. ++|+.+.+.++.. .+ .-..+.++++|+.+.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~~i~--~I------~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPNGVT--NI------ASRAFYYCPELAEVTTY 279 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEETTCC--EE------CTTTTTTCTTCCEEEEE
T ss_pred Cc-hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCCCcc--EE------ChhHhhCCCCCCEEEeC
Confidence 43 666654 456677788887765 466666655555 6777777754321 11 11356778888888887
Q ss_pred ccCCC-----CCCccc--cccCccEEEEEecCc---ccccccccccceeEeecCCCccchhHHHHHhcccceeecccccc
Q 037947 691 ILDAQ-----VMPREL--FSVGLERYKIFLGDV---WSWTGKYETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDKLNG 760 (780)
Q Consensus 691 ~~~~~-----~~~~~~--~~~~L~~L~i~~~~~---~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 760 (780)
.+... .++... .+++|+.+.+...-. ...+..+..++.+.|..+ ........+..+ +|+.|.+.+ +.
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~-n~ 356 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEG-TT 356 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECC-SS
T ss_pred CccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcC-CC
Confidence 66543 344443 667888887753110 123555677777776332 112233333334 788888887 34
Q ss_pred ccccc
Q 037947 761 FQNVL 765 (780)
Q Consensus 761 l~~~~ 765 (780)
+..+.
T Consensus 357 ~~~l~ 361 (401)
T 4fdw_A 357 PPQVF 361 (401)
T ss_dssp CCBCC
T ss_pred Ccccc
Confidence 34333
No 178
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.26 E-value=6.6e-06 Score=89.60 Aligned_cols=186 Identities=15% Similarity=0.196 Sum_probs=106.3
Q ss_pred ccccC-CchH--HHHHHHHHHccCC-ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHH
Q 037947 150 YEQFE-SRMP--TFQDIMEALKDDN-INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAG 225 (780)
Q Consensus 150 ~~~~~-gr~~--~~~~l~~~L~~~~-~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 225 (780)
.+.|+ |... ....+......+. ...+.|+|++|+||||||+.+++.......-..+++++.+. +..++..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~------~~~~~~~ 177 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK------FLNDLVD 177 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH------HHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH------HHHHHHH
Confidence 45566 5432 3344444444433 56799999999999999999999875441112345555433 3334443
Q ss_pred HcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc----cccccCCcccccccccCCCCCcEEEEEecchhHH--
Q 037947 226 ALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD----LDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDLL-- 299 (780)
Q Consensus 226 ~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~----~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v~-- 299 (780)
.+... ....+...+..+.-+|+|||++.... .+.+...+ +.+ ...|..||+||....-.
T Consensus 178 ~~~~~---------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l----~~l--~~~~~~iIitt~~~~~~l~ 242 (440)
T 2z4s_A 178 SMKEG---------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTF----NEL--HDSGKQIVICSDREPQKLS 242 (440)
T ss_dssp HHHTT---------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHH----HHH--HTTTCEEEEEESSCGGGCS
T ss_pred HHHcc---------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHH----HHH--HHCCCeEEEEECCCHHHHH
Confidence 33211 01223334443677999999966532 11121111 111 23466788888763210
Q ss_pred ------hhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHH
Q 037947 300 ------YNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTV 357 (780)
Q Consensus 300 ------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 357 (780)
...+.....+.+++++.++-.+++.+.+..... .--.++...|++.++|.+-.+..+
T Consensus 243 ~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~-~i~~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 243 EFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHG-ELPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp SCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC-CCCTTHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHHHH
Confidence 111223357899999999999999887741110 111245778889999988755443
No 179
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.24 E-value=7.1e-06 Score=86.48 Aligned_cols=190 Identities=13% Similarity=0.134 Sum_probs=108.1
Q ss_pred cccccccCCccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCC-eEEEEEEccCCCHHHH
Q 037947 141 WTETLHLRGYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFD-EVVMVVVSQKPDYKAI 219 (780)
Q Consensus 141 ~~~~~~~~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~ 219 (780)
+.....+.....++|.+..++.+..++..++.+.+.++|++|+||||+|+.+++...... +. ....++.+.......+
T Consensus 15 ~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-~~~~~~~~~~~~~~~~~~i 93 (340)
T 1sxj_C 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN-YSNMVLELNASDDRGIDVV 93 (340)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS-HHHHEEEECTTSCCSHHHH
T ss_pred hHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-ccceEEEEcCcccccHHHH
Confidence 333333445567889998999988888877665599999999999999999998864321 11 1222232222222221
Q ss_pred HHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEecchh
Q 037947 220 QNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKD 297 (780)
Q Consensus 220 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~ 297 (780)
.. ++..+.... ..+.+.+-++|+|++.... ..+.+...+ ......+.+|++|....
T Consensus 94 r~-~i~~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~l-------e~~~~~~~~il~~n~~~ 151 (340)
T 1sxj_C 94 RN-QIKDFASTR--------------QIFSKGFKLIILDEADAMTNAAQNALRRVI-------ERYTKNTRFCVLANYAH 151 (340)
T ss_dssp HT-HHHHHHHBC--------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHH-------HHTTTTEEEEEEESCGG
T ss_pred HH-HHHHHHhhc--------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHH-------hcCCCCeEEEEEecCcc
Confidence 11 111110000 0011346789999986542 222222111 22234566777665442
Q ss_pred -HHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHH
Q 037947 298 -LLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAI 354 (780)
Q Consensus 298 -v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai 354 (780)
+..........+++.+++.++..+.+...+.... ..--.+..+.|++.++|.+--+
T Consensus 152 ~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~-~~i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 152 KLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEK-LKLSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTT-CCBCHHHHHHHHHHHTTCHHHH
T ss_pred ccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHcCCCHHHH
Confidence 2122233445789999999999888877663111 1112356778888889877643
No 180
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.23 E-value=1.5e-05 Score=85.08 Aligned_cols=197 Identities=11% Similarity=0.107 Sum_probs=104.1
Q ss_pred ccccCCchHHHHH---HHHHHccCCc--cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc----CCCHHHHH
Q 037947 150 YEQFESRMPTFQD---IMEALKDDNI--NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ----KPDYKAIQ 220 (780)
Q Consensus 150 ~~~~~gr~~~~~~---l~~~L~~~~~--~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~~~~~~~ 220 (780)
...|+|++..++. +.+.+..... +.+.|+|++|+|||++|+.+++.......| +.+.... .....+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccchhHHH
Confidence 5678999888665 4555554433 589999999999999999999987532111 2222211 23334444
Q ss_pred HHHHHHc-CCC---------------------------cCC--CCCHHHHHHHHHHHh-----ccC----cEEEEEeCCC
Q 037947 221 NEIAGAL-GLF---------------------------LGE--HEDVSERAHLLRQRL-----KAS----RVLVILDDVW 261 (780)
Q Consensus 221 ~~i~~~l-~~~---------------------------~~~--~~~~~~~~~~l~~~L-----~~k----r~LlVlDdv~ 261 (780)
.+.+... +.. ... ..........+.... .++ +.+|+||++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 4443321 000 000 000111222222211 123 3599999997
Q ss_pred Cccc--cccccCCcccccccccCCCCCcEEEEEec-------------chhHHhhhcCCcceEEcCCCChHHHHHHHHHh
Q 037947 262 NRLD--LDAVGIPYKNYQNEIKDDRRRCAMLLTSR-------------RKDLLYNEMNSQKNFLINVLSDQEAVQLFEKM 326 (780)
Q Consensus 262 ~~~~--~~~l~~~~~~~~~~l~~~~~~s~iivTtr-------------~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 326 (780)
.... ...+...+ ...... .++++|. ...+..........+.+++++.++..+++...
T Consensus 200 ~l~~~~~~~L~~~l-------e~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~ 271 (368)
T 3uk6_A 200 MLDIESFSFLNRAL-------ESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIR 271 (368)
T ss_dssp GSBHHHHHHHHHHT-------TCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHh-------hCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHH
Confidence 6521 11111111 111112 3444443 11111112334456899999999999999987
Q ss_pred hCCCCCCCChhHHHHHHHHHhC-CChHHHHHHH
Q 037947 327 SGVFEGPLDFQNLAIKIARECG-GLPVAITTVA 358 (780)
Q Consensus 327 ~~~~~~~~~~~~~~~~i~~~c~-GlPLai~~~~ 358 (780)
+.... ..--.+..+.|++.+. |.|-.+..+.
T Consensus 272 ~~~~~-~~~~~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 272 CEEED-VEMSEDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp HHHTT-CCBCHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHcC-CCCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence 64211 1223467788899997 7776554433
No 181
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.21 E-value=3.9e-05 Score=81.21 Aligned_cols=185 Identities=12% Similarity=0.070 Sum_probs=104.2
Q ss_pred CccccCCchHHHHHHHHHHc------------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH
Q 037947 149 GYEQFESRMPTFQDIMEALK------------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY 216 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (780)
...+++|.+..++.+.+.+. ....+.|.|+|++|+|||++|+.+++.... ..+.++.+.-..
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~- 155 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTS- 155 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC-
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhc-
Confidence 34568899999888888764 234578999999999999999999886521 233444432211
Q ss_pred HHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCccc-------------cccccCCccccccccc-
Q 037947 217 KAIQNEIAGALGLFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNRLD-------------LDAVGIPYKNYQNEIK- 281 (780)
Q Consensus 217 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~l~- 281 (780)
..... .......+.... ..++.+|+||+++.... ...+...+ ..+.
T Consensus 156 -------------~~~g~--~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l----~~~~~ 216 (357)
T 3d8b_A 156 -------------KWVGE--GEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQL----DGATT 216 (357)
T ss_dssp -------------SSTTH--HHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHH----HC---
T ss_pred -------------cccch--HHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHH----hcccc
Confidence 00000 112222222222 34678999999854311 01111011 0001
Q ss_pred CCCCCcEEEEEecchhHH-hhhcCC-cceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCC-ChHHHHHHH
Q 037947 282 DDRRRCAMLLTSRRKDLL-YNEMNS-QKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGG-LPVAITTVA 358 (780)
Q Consensus 282 ~~~~~s~iivTtr~~~v~-~~~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~ 358 (780)
....+..||.||...... ...... ...+.+...+.++..+++...+..... .-..+..+.|++.+.| .+-.+..+.
T Consensus 217 ~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 217 SSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-CLSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp -CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-CccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 112345566667554321 111122 246788889999999988877642211 1123567889999988 555565554
Q ss_pred H
Q 037947 359 T 359 (780)
Q Consensus 359 ~ 359 (780)
.
T Consensus 296 ~ 296 (357)
T 3d8b_A 296 R 296 (357)
T ss_dssp H
T ss_pred H
Confidence 3
No 182
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.19 E-value=4.3e-05 Score=79.52 Aligned_cols=189 Identities=13% Similarity=0.085 Sum_probs=103.9
Q ss_pred CccccCCchHHHHHHHHHHc------------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH
Q 037947 149 GYEQFESRMPTFQDIMEALK------------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY 216 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (780)
...++.|-+..++.|.+.+. ....+-|.++|++|+|||+||+.+++..... ..+.++.+.-.
T Consensus 10 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~----~~~~i~~~~l~-- 83 (322)
T 1xwi_A 10 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS----TFFSISSSDLV-- 83 (322)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC----EEEEEECCSSC--
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC----cEEEEEhHHHH--
Confidence 35678898888888877653 1234679999999999999999999875211 12233333211
Q ss_pred HHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCcccccc--ccC----Ccccccc---cccCCCCC
Q 037947 217 KAIQNEIAGALGLFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNRLDLDA--VGI----PYKNYQN---EIKDDRRR 286 (780)
Q Consensus 217 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~--l~~----~~~~~~~---~l~~~~~~ 286 (780)
...... .+...+.+.... ..++.+|+||+++....-.. ... ....++. .+.....+
T Consensus 84 ------------~~~~g~--~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~ 149 (322)
T 1xwi_A 84 ------------SKWLGE--SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDG 149 (322)
T ss_dssp ------------CSSCCS--CHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTT
T ss_pred ------------hhhhhH--HHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCC
Confidence 111111 122233333333 35788999999976521000 000 0000000 01112345
Q ss_pred cEEEEEecchhHH-hhhc-CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCC-hHHHHHHH
Q 037947 287 CAMLLTSRRKDLL-YNEM-NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGL-PVAITTVA 358 (780)
Q Consensus 287 s~iivTtr~~~v~-~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 358 (780)
..||.||...... .... .-...+.+++.+.++-.+++...+...... .-......|++.+.|. +-.|..+.
T Consensus 150 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 150 ILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNS-LTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBC-CCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5566666554321 1111 223568888889999999998877532221 1235677889999887 44455444
No 183
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.16 E-value=6.3e-06 Score=85.60 Aligned_cols=153 Identities=16% Similarity=0.154 Sum_probs=86.8
Q ss_pred ccCCchHHHHHHHHHHc---------------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH
Q 037947 152 QFESRMPTFQDIMEALK---------------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY 216 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~---------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (780)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47788888777776543 234457999999999999999999988755433322223333311
Q ss_pred HHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhc-cCcEEEEEeCCCCcc-----------ccccccCCcccccccccCCC
Q 037947 217 KAIQNEIAGALGLFLGEHEDVSERAHLLRQRLK-ASRVLVILDDVWNRL-----------DLDAVGIPYKNYQNEIKDDR 284 (780)
Q Consensus 217 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~-----------~~~~l~~~~~~~~~~l~~~~ 284 (780)
.+....... ... .+...+. .+.-+|+||+++... ....+. ..+....
T Consensus 109 ---------~l~~~~~g~--~~~---~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll-------~~l~~~~ 167 (309)
T 3syl_A 109 ---------DLVGQYIGH--TAP---KTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILL-------QVMENNR 167 (309)
T ss_dssp ---------GTCCSSTTC--HHH---HHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHH-------HHHHHCT
T ss_pred ---------Hhhhhcccc--cHH---HHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHH-------HHHhcCC
Confidence 111111111 111 1222221 145699999997441 111121 1123344
Q ss_pred CCcEEEEEecchhHH------hhhcC-CcceEEcCCCChHHHHHHHHHhhC
Q 037947 285 RRCAMLLTSRRKDLL------YNEMN-SQKNFLINVLSDQEAVQLFEKMSG 328 (780)
Q Consensus 285 ~~s~iivTtr~~~v~------~~~~~-~~~~~~l~~L~~~~~~~Lf~~~~~ 328 (780)
.+..||+||...... ..... ....+.+++++.++-.+++...+.
T Consensus 168 ~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 168 DDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp TTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 566788887654321 00111 126799999999999999887664
No 184
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.15 E-value=5.4e-05 Score=78.89 Aligned_cols=189 Identities=16% Similarity=0.086 Sum_probs=105.6
Q ss_pred CCccccCCchHHHHHHHHHHc------------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC
Q 037947 148 RGYEQFESRMPTFQDIMEALK------------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD 215 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (780)
....+++|.+..++.|.+.+. ....+-|.++|++|+|||+||+.+++..... .+.++.+
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~---- 85 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS---- 85 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHH----
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchH----
Confidence 345678999999999888772 1124579999999999999999999875322 2223221
Q ss_pred HHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCccccc---------cccCCcccccccccCCCC
Q 037947 216 YKAIQNEIAGALGLFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNRLDLD---------AVGIPYKNYQNEIKDDRR 285 (780)
Q Consensus 216 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~---------~l~~~~~~~~~~l~~~~~ 285 (780)
++.. . ... . .+.....+.... ..++.+|+||+++....-. .+...+-..+..+.....
T Consensus 86 --~l~~----~----~~g-~-~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 153 (322)
T 3eie_A 86 --DLVS----K----WMG-E-SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQ 153 (322)
T ss_dssp --HHHT----T----TGG-G-HHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCC
T ss_pred --HHhh----c----ccc-h-HHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCC
Confidence 1111 0 000 0 222233333333 3467899999997552200 000000000111122334
Q ss_pred CcEEEEEecchhHHh-hhc-CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCC-hHHHHHHH
Q 037947 286 RCAMLLTSRRKDLLY-NEM-NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGL-PVAITTVA 358 (780)
Q Consensus 286 ~s~iivTtr~~~v~~-~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 358 (780)
+..||.||....... ... .-...+.++..+.++-.+++...+...... .-......|++.+.|. +-.|..+.
T Consensus 154 ~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 154 GVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCV-LTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp CEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCC-CCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred ceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 556666776643221 001 223467888899999999999888643221 1234567888888874 44444433
No 185
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.14 E-value=3.1e-05 Score=81.21 Aligned_cols=170 Identities=16% Similarity=0.182 Sum_probs=102.2
Q ss_pred hHHHHHHHHHHccCCc-cEEEEEcCCCChHHHHHHHHHHHHhccC--------------------CCCeEEEEEEc---c
Q 037947 157 MPTFQDIMEALKDDNI-NVIGIYGIGGVGKTTLVKQVARRVMEDK--------------------LFDEVVMVVVS---Q 212 (780)
Q Consensus 157 ~~~~~~l~~~L~~~~~-~vv~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs---~ 212 (780)
++..+.+...+..++. ..+.++|+.|+|||++|+.+.+...... |++ ..++... .
T Consensus 8 ~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~~ 86 (334)
T 1a5t_A 8 RPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGKN 86 (334)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTCS
T ss_pred HHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccCC
Confidence 4556677777776554 5799999999999999999998764321 122 1222221 1
Q ss_pred CCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc--cccccCCcccccccccCCCCCcEEE
Q 037947 213 KPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD--LDAVGIPYKNYQNEIKDDRRRCAML 290 (780)
Q Consensus 213 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~l~~~~~~s~ii 290 (780)
...++++ +++.+.+.... ..+++-++|+|+++.... .+.+.. .+.....++.+|
T Consensus 87 ~~~i~~i-r~l~~~~~~~~----------------~~~~~kvviIdead~l~~~a~naLLk-------~lEep~~~~~~I 142 (334)
T 1a5t_A 87 TLGVDAV-REVTEKLNEHA----------------RLGGAKVVWVTDAALLTDAAANALLK-------TLEEPPAETWFF 142 (334)
T ss_dssp SBCHHHH-HHHHHHTTSCC----------------TTSSCEEEEESCGGGBCHHHHHHHHH-------HHTSCCTTEEEE
T ss_pred CCCHHHH-HHHHHHHhhcc----------------ccCCcEEEEECchhhcCHHHHHHHHH-------HhcCCCCCeEEE
Confidence 1122211 12222221100 124677999999976532 222221 123334466777
Q ss_pred EEecchh-HHhhhcCCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHH
Q 037947 291 LTSRRKD-LLYNEMNSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTV 357 (780)
Q Consensus 291 vTtr~~~-v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~ 357 (780)
++|.+.. +..........+++++++.++..+.+.... .--.+.+..+++.++|.|..+..+
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~------~~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV------TMSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC------CCCHHHHHHHHHHTTTCHHHHHHT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc------CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 7766543 333334456689999999999999998875 112356678999999999766443
No 186
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.13 E-value=2.5e-06 Score=90.11 Aligned_cols=137 Identities=18% Similarity=0.204 Sum_probs=71.4
Q ss_pred hhhcCCCCccEEEecCCCCCCCCccccCCCCCCEEEccCccCCC--ccccc--ccCCCcEEEeecC--C------CCccC
Q 037947 552 LFFEGVPSLQVLSLNGFHFPSLPSTLGCLINLQTLSFECCVLGD--VATVG--ALKKLVILSFRNS--H------IEQLP 619 (780)
Q Consensus 552 ~~~~~l~~Lr~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~~~~--~~~i~--~l~~L~~L~l~~~--~------l~~lp 619 (780)
.++..++.|+.|+|+++....+|. + .+++|+.|+|..|.+.. +..++ .+++|+.|+|+.+ . +..+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 345567778888887764233443 3 36778888887776644 33443 6777777777521 1 21222
Q ss_pred hhh--cCCCCCCEEecCCCCCCcccCccc---cCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEEEeeccCC
Q 037947 620 EEI--GQLTRLKLLDLSNCSKLKSIRPNV---ISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTLEMHILDA 694 (780)
Q Consensus 620 ~~i--~~l~~L~~L~l~~~~~l~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L~l~~~~~ 694 (780)
..+ ..+++|++|++.+|. +....+.. .+.+++|++|+++.|.+.... .......+.++++|+.|+++.|.+
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G---~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDEG---ARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSCCBHHH---HHHHHTTHHHHTTCSEEECCSBBC
T ss_pred HHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCCCChHH---HHHHHhhcccCCcceEEECCCCcC
Confidence 222 245677777776632 22110011 124567777777666331100 001112234566677777766543
No 187
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.12 E-value=2.2e-05 Score=86.28 Aligned_cols=150 Identities=15% Similarity=0.234 Sum_probs=85.8
Q ss_pred CccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCC----C-eEEEEEEccCCCHHHHHHHH
Q 037947 149 GYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLF----D-EVVMVVVSQKPDYKAIQNEI 223 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F----~-~~~wv~vs~~~~~~~~~~~i 223 (780)
..++++||+.+++.++..+......-+.++|++|+|||++|+.+++........ + ..+.++.+.
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~----------- 246 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT----------- 246 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc-----------
Confidence 346799999999999999986666677899999999999999999986432111 1 122223220
Q ss_pred HHHcCCCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhH----
Q 037947 224 AGALGLFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDL---- 298 (780)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v---- 298 (780)
... .. .+.....+...+ ..++.+|++| ...+....+...+ . ....++|.+|.....
T Consensus 247 --~~~---g~---~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L-------~--~g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 247 --KYR---GE---FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSL-------A--RGELQCIGATTLDEYRKYI 307 (468)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCT-------T--SSSCEEEEECCTTTTHHHH
T ss_pred --ccc---ch---HHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhh-------c--CCCEEEEecCCHHHHHHHh
Confidence 000 00 011122222222 3567899999 2222222232222 1 224566666655431
Q ss_pred --HhhhcCCcceEEcCCCChHHHHHHHHHhhC
Q 037947 299 --LYNEMNSQKNFLINVLSDQEAVQLFEKMSG 328 (780)
Q Consensus 299 --~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 328 (780)
..........+.+++.+.++..+++.....
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 111122345799999999999999987664
No 188
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.08 E-value=6.9e-05 Score=79.15 Aligned_cols=188 Identities=15% Similarity=0.086 Sum_probs=102.6
Q ss_pred CccccCCchHHHHHHHHHHc------------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH
Q 037947 149 GYEQFESRMPTFQDIMEALK------------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY 216 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (780)
...+++|.+..++.|.+.+. ....+-|.++|++|+|||+||+.+++..... .+.++.+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHH-----
Confidence 34668899998888888763 1123458899999999999999999987321 2223222
Q ss_pred HHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCcccc---------ccccCCcccccccccCCCCC
Q 037947 217 KAIQNEIAGALGLFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNRLDL---------DAVGIPYKNYQNEIKDDRRR 286 (780)
Q Consensus 217 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~---------~~l~~~~~~~~~~l~~~~~~ 286 (780)
++.. .. ... .+.....+.... ..++.+|+||+++....- ..+...+-..+..+.....+
T Consensus 119 -~l~~----~~----~g~--~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 187 (355)
T 2qp9_X 119 -DLVS----KW----MGE--SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 187 (355)
T ss_dssp -HHHS----CC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CC
T ss_pred -HHhh----hh----cch--HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCC
Confidence 1111 00 011 112222233322 357889999999764210 00000000000011112345
Q ss_pred cEEEEEecchhHH-hhhc-CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCC-ChHHHHHHH
Q 037947 287 CAMLLTSRRKDLL-YNEM-NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGG-LPVAITTVA 358 (780)
Q Consensus 287 s~iivTtr~~~v~-~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~~~ 358 (780)
..||.||...... .... .-...+.+.+.+.++-.+++...+...... .-......|++.+.| .+-.|..+.
T Consensus 188 v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 188 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSV-LTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred eEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5666677654321 1111 223567889999999999998887543211 113456788999988 444444443
No 189
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.06 E-value=8.2e-06 Score=77.47 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=44.0
Q ss_pred CccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 149 GYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
....++||+.+++.+.+.+.....+.+.|+|++|+|||++|+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 45678999999999999998777778899999999999999999988644
No 190
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.04 E-value=0.00011 Score=80.06 Aligned_cols=185 Identities=15% Similarity=0.147 Sum_probs=103.0
Q ss_pred CccccCCchHHHHHHHHHHc------------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH
Q 037947 149 GYEQFESRMPTFQDIMEALK------------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY 216 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (780)
...+++|.+..++.|.+.+. ....+-|.++|++|+|||+||+.+++.... .-++.++...
T Consensus 132 ~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~------~~~~~v~~~~-- 203 (444)
T 2zan_A 132 KWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN------STFFSISSSD-- 203 (444)
T ss_dssp CGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS------SEEEEECCC---
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC------CCEEEEeHHH--
Confidence 35678899998888888763 123478999999999999999999987511 1233333321
Q ss_pred HHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCcccc-------------ccccCCcccccccccC
Q 037947 217 KAIQNEIAGALGLFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNRLDL-------------DAVGIPYKNYQNEIKD 282 (780)
Q Consensus 217 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~-------------~~l~~~~~~~~~~l~~ 282 (780)
+.... .+. ... ....+.... ..++.+|+||+++....- ..+...+ ..+..
T Consensus 204 --l~~~~---~g~---~~~----~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l----~~~~~ 267 (444)
T 2zan_A 204 --LVSKW---LGE---SEK----LVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQM----QGVGV 267 (444)
T ss_dssp ----------------CCC----THHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTT----TCSSC
T ss_pred --HHhhh---cch---HHH----HHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHH----hCccc
Confidence 11111 110 011 112222222 357889999999765110 0111111 11111
Q ss_pred CCCCcEEEEEecchhHH-hhhcCC-cceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCC-hHHHHHHH
Q 037947 283 DRRRCAMLLTSRRKDLL-YNEMNS-QKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGL-PVAITTVA 358 (780)
Q Consensus 283 ~~~~s~iivTtr~~~v~-~~~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~~ 358 (780)
...+..||.||...... ...... ...+.++..+.++-..+|...+...... .-......|++.+.|. +-.|..+.
T Consensus 268 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 268 DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNS-LTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEE-CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 23456677777655322 111122 3467888888888889998877533211 1234567888999884 44454443
No 191
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.04 E-value=0.00014 Score=77.85 Aligned_cols=189 Identities=14% Similarity=0.125 Sum_probs=102.6
Q ss_pred CCccccCCchHHHHHHHHHHc------------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC
Q 037947 148 RGYEQFESRMPTFQDIMEALK------------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD 215 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (780)
....+++|.+..++.+.+++. ....+-|.|+|++|+|||++|+.+++.... ..+.++.+.-.+
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~~ 186 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLTS 186 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC--
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhhc
Confidence 345678999999999988873 123468999999999999999999876421 123333322111
Q ss_pred HHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCcccc---------ccccCCcccccccccC-CC
Q 037947 216 YKAIQNEIAGALGLFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNRLDL---------DAVGIPYKNYQNEIKD-DR 284 (780)
Q Consensus 216 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~---------~~l~~~~~~~~~~l~~-~~ 284 (780)
.. .. . .......+.... ...+.+|+||+++....- ..+...+-..+..+.. ..
T Consensus 187 --~~------------~g-~-~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 250 (389)
T 3vfd_A 187 --KY------------VG-E-GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGD 250 (389)
T ss_dssp ---------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC----
T ss_pred --cc------------cc-h-HHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCC
Confidence 00 00 0 112222233322 346689999999654110 0000000000000011 12
Q ss_pred CCcEEEEEecchhHH-hhhcCCc-ceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChH-HHHHHH
Q 037947 285 RRCAMLLTSRRKDLL-YNEMNSQ-KNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPV-AITTVA 358 (780)
Q Consensus 285 ~~s~iivTtr~~~v~-~~~~~~~-~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 358 (780)
....||.||...... ....... ..+.+...+.++-.+++...+..... .-..+....|++.+.|..- +|..+.
T Consensus 251 ~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 251 DRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS-PLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp -CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC-CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 334566666553321 1112222 46889999999999999887753222 2223567789999988554 554443
No 192
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.02 E-value=0.00028 Score=72.51 Aligned_cols=188 Identities=14% Similarity=0.131 Sum_probs=102.0
Q ss_pred CccccCCchHHHHHHHHHHcc------------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH
Q 037947 149 GYEQFESRMPTFQDIMEALKD------------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY 216 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (780)
...+++|.+..++.+.+++.. ...+.+.|+|++|+||||+|+.+++.... ..+.++.+.-..
T Consensus 19 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~- 92 (297)
T 3b9p_A 19 EWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLTS- 92 (297)
T ss_dssp CGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTSS-
T ss_pred CHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhh-
Confidence 456789999999988887631 23578999999999999999999987532 123333332111
Q ss_pred HHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCcccccc---------ccCCcccccccccCC--C
Q 037947 217 KAIQNEIAGALGLFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNRLDLDA---------VGIPYKNYQNEIKDD--R 284 (780)
Q Consensus 217 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~~---------l~~~~~~~~~~l~~~--~ 284 (780)
... .......+.+.... ..++.+|+||++.....-.. +...+-.....+... +
T Consensus 93 -------------~~~--~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 93 -------------KYV--GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp -------------SSC--SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred -------------ccc--chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 000 11222233333322 35778999999966521100 000000000001111 1
Q ss_pred CCcEEEEEecchhHH-hhhc-CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChH-HHHHHH
Q 037947 285 RRCAMLLTSRRKDLL-YNEM-NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPV-AITTVA 358 (780)
Q Consensus 285 ~~s~iivTtr~~~v~-~~~~-~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPL-ai~~~~ 358 (780)
.+..||.||...... .... .-...+.+...+.++...++...+..... .-..+....+++.+.|.+- ++..+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS-PLDTEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC-CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345566677654321 1111 12246777788888888888776642211 1123567788999998775 444443
No 193
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.00 E-value=5.4e-05 Score=79.05 Aligned_cols=168 Identities=17% Similarity=0.117 Sum_probs=94.2
Q ss_pred HHHHHHHHHccC--CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCC
Q 037947 159 TFQDIMEALKDD--NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHED 236 (780)
Q Consensus 159 ~~~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~ 236 (780)
....+..+...+ ....+.|+|++|+||||||+.+++..... -..+++++.+ ++...+...+.. ..
T Consensus 22 a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~------~~~~~~~~~~~~-----~~ 88 (324)
T 1l8q_A 22 AYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSAD------DFAQAMVEHLKK-----GT 88 (324)
T ss_dssp HHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHH------HHHHHHHHHHHH-----TC
T ss_pred HHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHH------HHHHHHHHHHHc-----Cc
Confidence 344445554443 34678999999999999999999987543 1224555433 233333333211 00
Q ss_pred HHHHHHHHHHHhccCcEEEEEeCCCCccc---c-ccccCCcccccccccCCCCCcEEEEEecchhH-----H---hhhcC
Q 037947 237 VSERAHLLRQRLKASRVLVILDDVWNRLD---L-DAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDL-----L---YNEMN 304 (780)
Q Consensus 237 ~~~~~~~l~~~L~~kr~LlVlDdv~~~~~---~-~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v-----~---~~~~~ 304 (780)
. ..+...+ .+.-+|+|||+..... + +.+...+ +. ....+..||+||..... . .....
T Consensus 89 ~----~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l----~~--~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~ 157 (324)
T 1l8q_A 89 I----NEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIF----NT--LYLLEKQIILASDRHPQKLDGVSDRLVSRFE 157 (324)
T ss_dssp H----HHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHH----HH--HHHTTCEEEEEESSCGGGCTTSCHHHHHHHH
T ss_pred H----HHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHH----HH--HHHCCCeEEEEecCChHHHHHhhhHhhhccc
Confidence 1 1222222 2467999999966532 1 1121111 00 11235578888764321 0 11112
Q ss_pred CcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHH
Q 037947 305 SQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVA 353 (780)
Q Consensus 305 ~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 353 (780)
....+++++ +.++..+++...+.... ..--.+..+.|++.+ |.+-.
T Consensus 158 ~~~~i~l~~-~~~e~~~il~~~~~~~~-~~l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 158 GGILVEIEL-DNKTRFKIIKEKLKEFN-LELRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp TSEEEECCC-CHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHC-SSHHH
T ss_pred CceEEEeCC-CHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHhC-CCHHH
Confidence 235689999 99999999988774211 122246677888888 77654
No 194
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.00 E-value=6.9e-05 Score=78.86 Aligned_cols=180 Identities=14% Similarity=0.150 Sum_probs=101.0
Q ss_pred CccccCCchHHHHHHHHHHc-------------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC
Q 037947 149 GYEQFESRMPTFQDIMEALK-------------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD 215 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (780)
...++.|-++.+++|.+.+. -...+-|.++|++|+|||.||+.+++..... .+.++.+.-.+
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~s 220 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELVQ 220 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGSC
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhhc
Confidence 45677788888777776553 1234678999999999999999999987543 23444333211
Q ss_pred HHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCccccc---------cccCCccccccccc--CC
Q 037947 216 YKAIQNEIAGALGLFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNRLDLD---------AVGIPYKNYQNEIK--DD 283 (780)
Q Consensus 216 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~---------~l~~~~~~~~~~l~--~~ 283 (780)
....+ .+...+.+...- +..+++|++|+++....-. .....+..++..+- ..
T Consensus 221 --------------k~vGe--se~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 284 (405)
T 4b4t_J 221 --------------KYIGE--GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET 284 (405)
T ss_dssp --------------SSTTH--HHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC
T ss_pred --------------cccch--HHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC
Confidence 11010 112222222222 3478999999997652100 00000111111111 23
Q ss_pred CCCcEEEEEecchhHHhh-hc---CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 284 RRRCAMLLTSRRKDLLYN-EM---NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 284 ~~~s~iivTtr~~~v~~~-~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
..+..||.||........ .. .-...+.++.-+.++-.++|..+.......++.. ...|++.+.|.-
T Consensus 285 ~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd--l~~lA~~t~G~S 354 (405)
T 4b4t_J 285 SKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN--LRKVAEKMNGCS 354 (405)
T ss_dssp CCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC--HHHHHHHCCSCC
T ss_pred CCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC--HHHHHHHCCCCC
Confidence 345566777776654311 11 2346788988888888999988776433222211 456777787754
No 195
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.96 E-value=0.00013 Score=75.08 Aligned_cols=183 Identities=13% Similarity=0.149 Sum_probs=99.7
Q ss_pred CccccCCchHHHHHHHHHHcc-------------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC
Q 037947 149 GYEQFESRMPTFQDIMEALKD-------------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD 215 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (780)
...+++|.+..++.+.+++.. ...+.|.|+|++|+|||+||+.+++.... -++.++
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-------~~i~v~---- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-------NFISIK---- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-------EEEEEC----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-------CEEEEE----
Confidence 345688988888887776641 34568999999999999999999987532 122232
Q ss_pred HHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccccc---------cccCCccccccccc--CCC
Q 037947 216 YKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLDLD---------AVGIPYKNYQNEIK--DDR 284 (780)
Q Consensus 216 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~---------~l~~~~~~~~~~l~--~~~ 284 (780)
..++..... +.. .......+.......+.+|+||+++....-. ........++..+. ...
T Consensus 82 ~~~l~~~~~---g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 152 (301)
T 3cf0_A 82 GPELLTMWF---GES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 152 (301)
T ss_dssp HHHHHHHHH---TTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT
T ss_pred hHHHHhhhc---Cch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC
Confidence 223333221 111 1112222333334578999999997531100 00000000111111 123
Q ss_pred CCcEEEEEecchhHH-hhhcC---CcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHH
Q 037947 285 RRCAMLLTSRRKDLL-YNEMN---SQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVA 353 (780)
Q Consensus 285 ~~s~iivTtr~~~v~-~~~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 353 (780)
.+..||.||...... ..... -...+.+++.+.++-.+++............. -...+++.+.|.|-+
T Consensus 153 ~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~--~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 153 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGFSGA 223 (301)
T ss_dssp SSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHTCSSCCHH
T ss_pred CCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc--hHHHHHHHcCCCCHH
Confidence 356677777665332 11121 23578899999999999998877532221111 123555667776643
No 196
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.93 E-value=4.5e-05 Score=90.54 Aligned_cols=160 Identities=15% Similarity=0.237 Sum_probs=88.7
Q ss_pred CCccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCC---C-C-eEEEEEEccCCCHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKL---F-D-EVVMVVVSQKPDYKAIQNE 222 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~-~~~wv~vs~~~~~~~~~~~ 222 (780)
...++++||+++++.+++.|.....+-+.++|++|+||||+|+.+++....... . + .+++++++.-..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 345678999999999999998766667889999999999999999998643211 1 1 233443322100
Q ss_pred HHHHcCCCcCCCCCHHHHHHHHHHHhc--cCcEEEEEeCCCCccc-------cccccCCcccccccccCCCCCcEEEEEe
Q 037947 223 IAGALGLFLGEHEDVSERAHLLRQRLK--ASRVLVILDDVWNRLD-------LDAVGIPYKNYQNEIKDDRRRCAMLLTS 293 (780)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVlDdv~~~~~-------~~~l~~~~~~~~~~l~~~~~~s~iivTt 293 (780)
+... ..+.......+...+. +++.+|++|++..... ++. ...+ ... . ...+..+|.+|
T Consensus 240 -----g~~~--~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~-~~~L---~~~-l-~~~~i~~I~at 306 (854)
T 1qvr_A 240 -----GAKY--RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDA-GNML---KPA-L-ARGELRLIGAT 306 (854)
T ss_dssp -------------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------HHH-H-HTTCCCEEEEE
T ss_pred -----cCcc--chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHH-HHHH---HHH-H-hCCCeEEEEec
Confidence 0000 0113333344444443 3678999999976531 111 0111 111 1 12234566555
Q ss_pred cchhH-----HhhhcCCcceEEcCCCChHHHHHHHHHhh
Q 037947 294 RRKDL-----LYNEMNSQKNFLINVLSDQEAVQLFEKMS 327 (780)
Q Consensus 294 r~~~v-----~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 327 (780)
..... ..........+.+++++.++..+++....
T Consensus 307 ~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 307 TLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLK 345 (854)
T ss_dssp CHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHH
T ss_pred CchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhh
Confidence 54332 11122334568999999999999987543
No 197
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=0.00016 Score=77.48 Aligned_cols=180 Identities=13% Similarity=0.175 Sum_probs=99.3
Q ss_pred CccccCCchHHHHHHHHHHc-------------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC
Q 037947 149 GYEQFESRMPTFQDIMEALK-------------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD 215 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (780)
...++.|-++.+++|.+.+. -...+-|.++|++|+|||+||+.+++..... .+.++.+.-.+
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s 253 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD 253 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc
Confidence 35677888888777776653 1245789999999999999999999987533 23444443211
Q ss_pred HHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCccccc---------cccCCcccccccc--cCC
Q 037947 216 YKAIQNEIAGALGLFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNRLDLD---------AVGIPYKNYQNEI--KDD 283 (780)
Q Consensus 216 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~---------~l~~~~~~~~~~l--~~~ 283 (780)
..... .+...+.+...- ...+++|++|+++....-. .....+..++..+ ...
T Consensus 254 --------------k~~Ge--se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~ 317 (437)
T 4b4t_L 254 --------------KYIGE--SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN 317 (437)
T ss_dssp --------------SSSSH--HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC
T ss_pred --------------ccchH--HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC
Confidence 11111 112222222222 3478999999997542100 0000001111111 122
Q ss_pred CCCcEEEEEecchhHHhhh-cC---CcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 284 RRRCAMLLTSRRKDLLYNE-MN---SQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 284 ~~~s~iivTtr~~~v~~~~-~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
..+..||.||......... .. -...+.++..+.++-.++|..+........+.. ...+++.+.|.-
T Consensus 318 ~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d--l~~lA~~t~G~s 387 (437)
T 4b4t_L 318 LGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD--FEAAVKMSDGFN 387 (437)
T ss_dssp TTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC--HHHHHHTCCSCC
T ss_pred CCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC--HHHHHHhCCCCC
Confidence 3455677788766543111 11 234677877788888888877765322222111 356677777754
No 198
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.85 E-value=0.00011 Score=86.24 Aligned_cols=150 Identities=15% Similarity=0.216 Sum_probs=86.3
Q ss_pred CccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCC----CCe-EEEEEEccCCCHHHHHHHH
Q 037947 149 GYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKL----FDE-VVMVVVSQKPDYKAIQNEI 223 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~-~~wv~vs~~~~~~~~~~~i 223 (780)
...+++||+.+++.++..|......-+.++|++|+|||++|+.+++....... .+. .+.++.
T Consensus 178 ~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------- 244 (758)
T 3pxi_A 178 SLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------- 244 (758)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------------
T ss_pred CCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc-------------
Confidence 35679999999999999998766667899999999999999999998633211 011 111221
Q ss_pred HHHcCCCcCCCCCHHHHHH-HHHHHhccCcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhH----
Q 037947 224 AGALGLFLGEHEDVSERAH-LLRQRLKASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDL---- 298 (780)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~-~l~~~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v---- 298 (780)
+...... .+...+ .+...-..++.+|++| ...+....+...+ . ....++|.||.....
T Consensus 245 ----g~~~~G~--~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l-------~--~~~v~~I~at~~~~~~~~~ 307 (758)
T 3pxi_A 245 ----GTKYRGE--FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSL-------A--RGELQCIGATTLDEYRKYI 307 (758)
T ss_dssp --------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCT-------T--SSSCEEEEECCTTTTHHHH
T ss_pred ----cccccch--HHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHH-------h--cCCEEEEeCCChHHHHHHh
Confidence 1000000 111122 2222333578899999 2222222232222 1 334567776665541
Q ss_pred --HhhhcCCcceEEcCCCChHHHHHHHHHhhC
Q 037947 299 --LYNEMNSQKNFLINVLSDQEAVQLFEKMSG 328 (780)
Q Consensus 299 --~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~ 328 (780)
..........+.+++.+.++..+++.....
T Consensus 308 ~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred hccHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 111122335799999999999999987654
No 199
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.84 E-value=9.3e-06 Score=85.78 Aligned_cols=61 Identities=20% Similarity=0.148 Sum_probs=33.0
Q ss_pred CCccccCCCCCCEEEccCccCCCcccccccCCCcEEEeecCCCCcc-Chhhc--CCCCCCEEecC
Q 037947 573 LPSTLGCLINLQTLSFECCVLGDVATVGALKKLVILSFRNSHIEQL-PEEIG--QLTRLKLLDLS 634 (780)
Q Consensus 573 lp~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L~l~~~~l~~l-p~~i~--~l~~L~~L~l~ 634 (780)
++..+..+++|+.|+|++|.-..++.+ .+++|+.|++..|.+..- ...+. .+++|++|+|+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 334445667777777776631122223 266777777766654321 11222 56677777664
No 200
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.82 E-value=0.0003 Score=70.65 Aligned_cols=187 Identities=14% Similarity=0.155 Sum_probs=94.6
Q ss_pred CCccccCCchHHHHHHHHHH---cc---------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC
Q 037947 148 RGYEQFESRMPTFQDIMEAL---KD---------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD 215 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L---~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (780)
....+++|.+..++++.+.+ .. ...+-+.|+|++|+||||+|+.+++..... .+.++.+.-.+
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~~~~ 83 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSDFVE 83 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCSSTT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHHHHH
Confidence 34567889887776665543 21 123458899999999999999999876321 23332221100
Q ss_pred HHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcccc--ccccCC-------ccccccccc--CCC
Q 037947 216 YKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLDL--DAVGIP-------YKNYQNEIK--DDR 284 (780)
Q Consensus 216 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~--~~l~~~-------~~~~~~~l~--~~~ 284 (780)
.... .........+.......+.++++|+++....- ..+... +..++..+. ...
T Consensus 84 --------------~~~~-~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 84 --------------MFVG-VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp --------------SCCC-CCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred --------------Hhhh-hhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 0001 11222222233333446789999998433110 000000 000000000 123
Q ss_pred CCcEEEEEecchhHH-hhhcC---CcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCC-ChHHHHH
Q 037947 285 RRCAMLLTSRRKDLL-YNEMN---SQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGG-LPVAITT 356 (780)
Q Consensus 285 ~~s~iivTtr~~~v~-~~~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~G-lPLai~~ 356 (780)
.+..||.||...... ..... -...+.+++.+.++-.+++..........++. ....++..+.| .+--+..
T Consensus 149 ~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~--~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 149 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp SCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCCHHHHHH
T ss_pred CCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccc--cHHHHHHHcCCCCHHHHHH
Confidence 345677777665422 11111 23467788888888888887776432211111 13456677777 6644443
No 201
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.001 Score=70.21 Aligned_cols=181 Identities=14% Similarity=0.147 Sum_probs=99.4
Q ss_pred CCccccCCchHHHHHHHHHHc-------------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCC
Q 037947 148 RGYEQFESRMPTFQDIMEALK-------------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKP 214 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 214 (780)
....++.|-++.+++|.+.+. -...+-|.++|++|+|||.||+.+++..... .+.++.+.-.
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~l~ 253 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSELI 253 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGGGC
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHHhh
Confidence 345677788888777776553 1235789999999999999999999987543 2333333211
Q ss_pred CHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCccccc---------cccCCcccccccc--cC
Q 037947 215 DYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNRLDLD---------AVGIPYKNYQNEI--KD 282 (780)
Q Consensus 215 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~---------~l~~~~~~~~~~l--~~ 282 (780)
.....+ .+...+.+...- +..+++|++|+++....-. .....+..++..+ ..
T Consensus 254 --------------sk~vGe--sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~ 317 (437)
T 4b4t_I 254 --------------QKYLGD--GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD 317 (437)
T ss_dssp --------------CSSSSH--HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC
T ss_pred --------------hccCch--HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC
Confidence 111111 122222333222 3478999999987552110 0000011111111 12
Q ss_pred CCCCcEEEEEecchhHHhhhc----CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 283 DRRRCAMLLTSRRKDLLYNEM----NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 283 ~~~~s~iivTtr~~~v~~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
...+..||.||...+...... .-...+.++.-+.++-.++|..+.......++. -...|++.+.|.-
T Consensus 318 ~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv--dl~~LA~~T~GfS 388 (437)
T 4b4t_I 318 DRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV--NLETLVTTKDDLS 388 (437)
T ss_dssp CSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC--CHHHHHHHCCSCC
T ss_pred CCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCCC
Confidence 234556777777665432222 123457787778888888888777533222211 1356677777753
No 202
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.00015 Score=77.48 Aligned_cols=181 Identities=14% Similarity=0.153 Sum_probs=98.4
Q ss_pred CCccccCCchHHHHHHHHHHc-------------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCC
Q 037947 148 RGYEQFESRMPTFQDIMEALK-------------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKP 214 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 214 (780)
....++.|-++.+++|.+.+. -...+-|.++|++|+|||.||+.+++..... .+.++.+.-.
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~ 252 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQLV 252 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGC
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhhh
Confidence 346778898888888877643 1245789999999999999999999987532 2334433211
Q ss_pred CHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCcccc----c-----cccCCccccccccc--C
Q 037947 215 DYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNRLDL----D-----AVGIPYKNYQNEIK--D 282 (780)
Q Consensus 215 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~----~-----~l~~~~~~~~~~l~--~ 282 (780)
...... .+...+.+...- ...+++|++|+++....- . .....+..++..+- .
T Consensus 253 --------------~~~vGe--se~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~ 316 (434)
T 4b4t_M 253 --------------QMYIGE--GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS 316 (434)
T ss_dssp --------------SSCSSH--HHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC
T ss_pred --------------hcccch--HHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC
Confidence 111111 112222222222 347899999998543100 0 00000001111111 1
Q ss_pred CCCCcEEEEEecchhHHhhhc----CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 283 DRRRCAMLLTSRRKDLLYNEM----NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 283 ~~~~s~iivTtr~~~v~~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
...+..||.||.........+ .-...+.++..+.++-.++|..+.......++.. ...|++.+.|.-
T Consensus 317 ~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd--l~~lA~~t~G~s 387 (434)
T 4b4t_M 317 SDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN--WQELARSTDEFN 387 (434)
T ss_dssp SSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC--HHHHHHHCSSCC
T ss_pred CCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCC
Confidence 233456666777765432111 1235688888888888888876664222212111 356777787753
No 203
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.00042 Score=73.96 Aligned_cols=179 Identities=15% Similarity=0.152 Sum_probs=99.2
Q ss_pred ccccCCchHHHHHHHHHHc-------------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH
Q 037947 150 YEQFESRMPTFQDIMEALK-------------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY 216 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (780)
..++.|-++.+++|.+.+. -...+-|.++|++|+|||+||+.+++..... .+.++.+.-.+
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~s- 281 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELVQ- 281 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGCC-
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhhc-
Confidence 4567788888887776543 1346789999999999999999999987543 23344332111
Q ss_pred HHHHHHHHHHcCCCcCCCCCHHHHHHHHHHH-hccCcEEEEEeCCCCccccc---------cccCCccccccccc--CCC
Q 037947 217 KAIQNEIAGALGLFLGEHEDVSERAHLLRQR-LKASRVLVILDDVWNRLDLD---------AVGIPYKNYQNEIK--DDR 284 (780)
Q Consensus 217 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~~---------~l~~~~~~~~~~l~--~~~ 284 (780)
..... .+...+.+... -...+++|++|+++....-. .....+..++..+- ...
T Consensus 282 -------------k~vGe--sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 346 (467)
T 4b4t_H 282 -------------KYVGE--GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR 346 (467)
T ss_dssp -------------CSSSH--HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT
T ss_pred -------------ccCCH--HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC
Confidence 11111 11222222222 23578999999997552100 00000001111111 123
Q ss_pred CCcEEEEEecchhHHhh-hc---CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 285 RRCAMLLTSRRKDLLYN-EM---NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 285 ~~s~iivTtr~~~v~~~-~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
.+..||.||........ .. .-...+.++..+.++-.++|..++.......+.. ...|++.|.|.-
T Consensus 347 ~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd--l~~LA~~T~GfS 415 (467)
T 4b4t_H 347 GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR--WELISRLCPNST 415 (467)
T ss_dssp TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHHCCSCC
T ss_pred CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHCCCCC
Confidence 34456667766543211 11 2345788888888888899988776432222211 356777787754
No 204
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.80 E-value=2.9e-05 Score=73.43 Aligned_cols=117 Identities=14% Similarity=0.097 Sum_probs=62.5
Q ss_pred hHHHHHHHHHHcc---CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCC
Q 037947 157 MPTFQDIMEALKD---DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGE 233 (780)
Q Consensus 157 ~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~ 233 (780)
...++.+.+++.+ .....+.|+|++|+||||||+.+++.......+. +++++ ..++...+........
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~-- 90 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGK-- 90 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCch--
Confidence 3344444444432 3457899999999999999999999875322222 23333 3444444443332110
Q ss_pred CCCHHHHHHHHHHHhccCcEEEEEeCCCC--cccccc--ccCCcccccccccCCCCCcEEEEEecch
Q 037947 234 HEDVSERAHLLRQRLKASRVLVILDDVWN--RLDLDA--VGIPYKNYQNEIKDDRRRCAMLLTSRRK 296 (780)
Q Consensus 234 ~~~~~~~~~~l~~~L~~kr~LlVlDdv~~--~~~~~~--l~~~~~~~~~~l~~~~~~s~iivTtr~~ 296 (780)
.. .+.+.+. +.-+|||||++. .+.|.. +...+ .. ....|..||+||...
T Consensus 91 ---~~----~~~~~~~-~~~llilDE~~~~~~~~~~~~~l~~ll----~~--~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 91 ---DT----KFLKTVL-NSPVLVLDDLGSERLSDWQRELISYII----TY--RYNNLKSTIITTNYS 143 (180)
T ss_dssp ---CS----HHHHHHH-TCSEEEEETCSSSCCCHHHHHHHHHHH----HH--HHHTTCEEEEECCCC
T ss_pred ---HH----HHHHHhc-CCCEEEEeCCCCCcCCHHHHHHHHHHH----HH--HHHcCCCEEEEcCCC
Confidence 01 1222222 456899999974 233321 11111 00 112467788888654
No 205
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.76 E-value=0.00035 Score=82.02 Aligned_cols=156 Identities=15% Similarity=0.231 Sum_probs=93.5
Q ss_pred CccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCC----CCeEEE-EEEccCCCHHHHHHHH
Q 037947 149 GYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKL----FDEVVM-VVVSQKPDYKAIQNEI 223 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~w-v~vs~~~~~~~~~~~i 223 (780)
....++||+.+++.+++.|......-+.++|++|+|||++|+.+++....... ....+| ++.+.-
T Consensus 184 ~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l---------- 253 (758)
T 1r6b_X 184 GIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL---------- 253 (758)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC------------
T ss_pred CCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH----------
Confidence 45678999999999999998777777899999999999999999987643211 233332 111110
Q ss_pred HHHcCCCcCCCCCHHHHHHHHHHHhcc-CcEEEEEeCCCCcc--------cc---ccccCCcccccccccCCCCCcEEEE
Q 037947 224 AGALGLFLGEHEDVSERAHLLRQRLKA-SRVLVILDDVWNRL--------DL---DAVGIPYKNYQNEIKDDRRRCAMLL 291 (780)
Q Consensus 224 ~~~l~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~--------~~---~~l~~~~~~~~~~l~~~~~~s~iiv 291 (780)
+... ......+...+.+.+.+.. ++.+|++||+.... .. ..+...+ ...+..+|.
T Consensus 254 ---~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l---------~~~~~~~I~ 320 (758)
T 1r6b_X 254 ---LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIG 320 (758)
T ss_dssp ----CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS---------SSCCCEEEE
T ss_pred ---hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH---------hCCCeEEEE
Confidence 0000 0111234444444444443 67899999997551 11 1122111 223456666
Q ss_pred EecchhHH------hhhcCCcceEEcCCCChHHHHHHHHHhh
Q 037947 292 TSRRKDLL------YNEMNSQKNFLINVLSDQEAVQLFEKMS 327 (780)
Q Consensus 292 Ttr~~~v~------~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 327 (780)
+|...... .........+.+++.+.++..+++....
T Consensus 321 at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 321 STTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 66654321 0011223468899999999988887644
No 206
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.74 E-value=0.00013 Score=74.96 Aligned_cols=145 Identities=17% Similarity=0.073 Sum_probs=88.7
Q ss_pred chHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhcc--CCCCeEEEEEEcc-CCCHHHHHHHHHHHcCCCcC
Q 037947 156 RMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMED--KLFDEVVMVVVSQ-KPDYKAIQNEIAGALGLFLG 232 (780)
Q Consensus 156 r~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~ 232 (780)
-++.++.+...+..++.+.+.++|++|+||||+|+.+.+..... .+.+ ..+++.+. ...++++ +++.+.+....
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p- 78 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP- 78 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC-
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc-
Confidence 34566777777776667899999999999999999998853211 2333 34454432 3344333 33444333211
Q ss_pred CCCCHHHHHHHHHHHhccCcEEEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEecch-hHHhhhcCCcceE
Q 037947 233 EHEDVSERAHLLRQRLKASRVLVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRK-DLLYNEMNSQKNF 309 (780)
Q Consensus 233 ~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~-~v~~~~~~~~~~~ 309 (780)
..+++-++|+|+++... ..+.+... +......+.+|++|.+. .+....... .+
T Consensus 79 ---------------~~~~~kvviIdead~lt~~a~naLLk~-------LEep~~~t~fIl~t~~~~kl~~tI~SR--~~ 134 (305)
T 2gno_A 79 ---------------ELYTRKYVIVHDCERMTQQAANAFLKA-------LEEPPEYAVIVLNTRRWHYLLPTIKSR--VF 134 (305)
T ss_dssp ---------------SSSSSEEEEETTGGGBCHHHHHHTHHH-------HHSCCTTEEEEEEESCGGGSCHHHHTT--SE
T ss_pred ---------------ccCCceEEEeccHHHhCHHHHHHHHHH-------HhCCCCCeEEEEEECChHhChHHHHce--eE
Confidence 02456799999997653 22333222 23444567777766544 332222233 89
Q ss_pred EcCCCChHHHHHHHHHhh
Q 037947 310 LINVLSDQEAVQLFEKMS 327 (780)
Q Consensus 310 ~l~~L~~~~~~~Lf~~~~ 327 (780)
++++++.++..+.+.+..
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999999998876
No 207
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.73 E-value=1.3e-05 Score=74.24 Aligned_cols=84 Identities=15% Similarity=0.226 Sum_probs=53.8
Q ss_pred CCccEEEecCCCCCCC-CccccCCCCCCEEEccCcc-CCC--ccccccc----CCCcEEEeecC-CCCcc-ChhhcCCCC
Q 037947 558 PSLQVLSLNGFHFPSL-PSTLGCLINLQTLSFECCV-LGD--VATVGAL----KKLVILSFRNS-HIEQL-PEEIGQLTR 627 (780)
Q Consensus 558 ~~Lr~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~-~~~--~~~i~~l----~~L~~L~l~~~-~l~~l-p~~i~~l~~ 627 (780)
..|+.||+++|.++.- -..+..+++|+.|+|++|. +++ +..+..+ ++|++|+|++| .|+.- -..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4688888888887632 3456677888888888875 554 4555553 35777777776 35531 123455677
Q ss_pred CCEEecCCCCCCcc
Q 037947 628 LKLLDLSNCSKLKS 641 (780)
Q Consensus 628 L~~L~l~~~~~l~~ 641 (780)
|++|++++|+.++.
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 77777777666554
No 208
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.70 E-value=2.2e-05 Score=71.20 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=35.2
Q ss_pred ccCCchHHHHHHHHHHc--cCCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 152 QFESRMPTFQDIMEALK--DDNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.++|+...++++.+.+. .....-|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 46899999988888775 2333457899999999999999998764
No 209
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.69 E-value=1.5e-05 Score=75.76 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=56.6
Q ss_pred hcCCCCccEEEecCC-CCCC-----CCccccCCCCCCEEEccCccCCC------cccccccCCCcEEEeecCCCCc----
Q 037947 554 FEGVPSLQVLSLNGF-HFPS-----LPSTLGCLINLQTLSFECCVLGD------VATVGALKKLVILSFRNSHIEQ---- 617 (780)
Q Consensus 554 ~~~l~~Lr~L~l~~~-~~~~-----lp~~i~~l~~L~~L~L~~~~~~~------~~~i~~l~~L~~L~l~~~~l~~---- 617 (780)
+...+.|+.|+|++| .+.. +...+...++|++|+|++|.+.. ...+....+|++|+|++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345566666666666 5541 23344455666666666666654 1233444566666666666653
Q ss_pred -cChhhcCCCCCCEEec--CCCCCCcccC----ccccCCCcccceeeccCC
Q 037947 618 -LPEEIGQLTRLKLLDL--SNCSKLKSIR----PNVISNLPRLEELYMGNS 661 (780)
Q Consensus 618 -lp~~i~~l~~L~~L~l--~~~~~l~~~~----~~~l~~l~~L~~L~l~~~ 661 (780)
+...+...++|++|++ ++ +.++... ...+...++|++|++++|
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 4445555566666666 43 3343211 112333455666666555
No 210
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.68 E-value=5.3e-05 Score=73.02 Aligned_cols=125 Identities=15% Similarity=0.139 Sum_probs=66.8
Q ss_pred ccccCCch----HHHHHHHHHHccC----CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHH
Q 037947 150 YEQFESRM----PTFQDIMEALKDD----NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQN 221 (780)
Q Consensus 150 ~~~~~gr~----~~~~~l~~~L~~~----~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 221 (780)
.+.|++.. ..++.+.+++... ..+.+.|+|++|+|||+||+.+++..... ...++|++++ ++..
T Consensus 24 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~ 95 (202)
T 2w58_A 24 LSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFR 95 (202)
T ss_dssp TTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHH
T ss_pred HhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHH
Confidence 34455533 3445555555532 12789999999999999999999987654 3345666543 4444
Q ss_pred HHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCc--cccccccCCcccccccccCC-CCCcEEEEEecch
Q 037947 222 EIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNR--LDLDAVGIPYKNYQNEIKDD-RRRCAMLLTSRRK 296 (780)
Q Consensus 222 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~l~~~-~~~s~iivTtr~~ 296 (780)
.+...... .. ... +.+.+.+. -+|||||++.. ..|..-. .+.. .+... ..+.++|+||...
T Consensus 96 ~~~~~~~~----~~-~~~----~~~~~~~~-~~lilDei~~~~~~~~~~~~-ll~~---~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 96 ELKHSLQD----QT-MNE----KLDYIKKV-PVLMLDDLGAEAMSSWVRDD-VFGP---ILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp HHHHC-------CC-CHH----HHHHHHHS-SEEEEEEECCC---CCGGGT-THHH---HHHHHHHTTCCEEEEESSC
T ss_pred HHHHHhcc----ch-HHH----HHHHhcCC-CEEEEcCCCCCcCCHHHHHH-HHHH---HHHHHHhCCCCEEEEcCCC
Confidence 44433221 11 122 22233333 39999999653 3333211 1100 00111 2455788888754
No 211
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.66 E-value=2.8e-05 Score=73.85 Aligned_cols=106 Identities=14% Similarity=0.144 Sum_probs=79.7
Q ss_pred CCCCccEEEeccC-ccccccC---chhhcCCCCccEEEecCCCCCC-----CCccccCCCCCCEEEccCccCCC------
Q 037947 531 ECPKLKLFFLFSK-KLSLVIP---DLFFEGVPSLQVLSLNGFHFPS-----LPSTLGCLINLQTLSFECCVLGD------ 595 (780)
Q Consensus 531 ~~~~L~~L~l~~~-~~~~~~~---~~~~~~l~~Lr~L~l~~~~~~~-----lp~~i~~l~~L~~L~L~~~~~~~------ 595 (780)
.+++|+.|++++| .+...-. ...+...+.|++|+|++|.+.. +...+...++|++|+|++|.++.
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 5678888999888 6653211 1224567889999999998863 34455667889999999999876
Q ss_pred cccccccCCCcEEEe--ecCCCCc-----cChhhcCCCCCCEEecCCC
Q 037947 596 VATVGALKKLVILSF--RNSHIEQ-----LPEEIGQLTRLKLLDLSNC 636 (780)
Q Consensus 596 ~~~i~~l~~L~~L~l--~~~~l~~-----lp~~i~~l~~L~~L~l~~~ 636 (780)
...+....+|++|++ ++|.+.. +...+...++|++|++++|
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 246677788999999 7788874 5566777789999999883
No 212
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.64 E-value=2.8e-05 Score=72.02 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=38.4
Q ss_pred CccEEEeccCccccccCchhhcCCCCccEEEecCCC-CCCC-CccccCC----CCCCEEEccCcc-CCC--cccccccCC
Q 037947 534 KLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFH-FPSL-PSTLGCL----INLQTLSFECCV-LGD--VATVGALKK 604 (780)
Q Consensus 534 ~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-~~~l-p~~i~~l----~~L~~L~L~~~~-~~~--~~~i~~l~~ 604 (780)
+|+.|+++++.++..-... +.++++|+.|+|++|. +++- -..+..+ ++|++|+|++|. +++ +..+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 4555666555544322222 2455566666666553 4311 1223332 245666665553 444 444555556
Q ss_pred CcEEEeecC
Q 037947 605 LVILSFRNS 613 (780)
Q Consensus 605 L~~L~l~~~ 613 (780)
|++|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 666666555
No 213
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.0017 Score=69.30 Aligned_cols=180 Identities=17% Similarity=0.144 Sum_probs=93.8
Q ss_pred CccccCCchHHHHHHHHHHc-------------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC
Q 037947 149 GYEQFESRMPTFQDIMEALK-------------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD 215 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (780)
...++.|-++.+++|.+.+. -...+-|.++|++|+|||++|+.+++..... .+.++.+.-.+
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~~ 244 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFVH 244 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTCC
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhhc
Confidence 45677888888888777653 1245679999999999999999999987432 23444443211
Q ss_pred HHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHH-hccCcEEEEEeCCCCcccc--------c-cccCCccccccccc--CC
Q 037947 216 YKAIQNEIAGALGLFLGEHEDVSERAHLLRQR-LKASRVLVILDDVWNRLDL--------D-AVGIPYKNYQNEIK--DD 283 (780)
Q Consensus 216 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-L~~kr~LlVlDdv~~~~~~--------~-~l~~~~~~~~~~l~--~~ 283 (780)
..... .+...+.+... -...++++++|+++....- + .....+..++..+- ..
T Consensus 245 --------------~~~Ge--~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~ 308 (428)
T 4b4t_K 245 --------------KYLGE--GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ 308 (428)
T ss_dssp --------------SSCSH--HHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS
T ss_pred --------------cccch--hHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC
Confidence 00000 11222222222 2357899999998543110 0 00000111111111 23
Q ss_pred CCCcEEEEEecchhHH-hhhc---CCcceEEcCCCChHH-HHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 284 RRRCAMLLTSRRKDLL-YNEM---NSQKNFLINVLSDQE-AVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 284 ~~~s~iivTtr~~~v~-~~~~---~~~~~~~l~~L~~~~-~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
..+..||.||...... .... .-...+.++.++..+ -..+|..+.......++. -...+++.+.|.-
T Consensus 309 ~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~--dl~~lA~~t~G~s 379 (428)
T 4b4t_K 309 STNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA--DLDSLIIRNDSLS 379 (428)
T ss_dssp SCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC--CHHHHHHHTTTCC
T ss_pred CCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHHCCCCC
Confidence 3455677788765532 1111 123467776665544 445665555322211111 1356677777753
No 214
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.57 E-value=0.0003 Score=72.73 Aligned_cols=46 Identities=22% Similarity=0.315 Sum_probs=37.6
Q ss_pred cccCCchHHHHHHHHHHcc--------------CCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 151 EQFESRMPTFQDIMEALKD--------------DNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~~--------------~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3478999988888877653 234568899999999999999999876
No 215
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.56 E-value=7.5e-05 Score=74.69 Aligned_cols=78 Identities=23% Similarity=0.250 Sum_probs=56.2
Q ss_pred cCCCCccEEEecCCCCCCC---CccccCCCCCCEEEccCccCCCcccccccC--CCcEEEeecCCCCc-cC-------hh
Q 037947 555 EGVPSLQVLSLNGFHFPSL---PSTLGCLINLQTLSFECCVLGDVATVGALK--KLVILSFRNSHIEQ-LP-------EE 621 (780)
Q Consensus 555 ~~l~~Lr~L~l~~~~~~~l---p~~i~~l~~L~~L~L~~~~~~~~~~i~~l~--~L~~L~l~~~~l~~-lp-------~~ 621 (780)
.+++.|+.|+|++|.++.+ |..+..+++|++|+|++|.+..+..+..+. +|++|+|++|.+.. +| .-
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4577888888888888754 355667888888888888887766666665 78888888887653 43 12
Q ss_pred hcCCCCCCEEe
Q 037947 622 IGQLTRLKLLD 632 (780)
Q Consensus 622 i~~l~~L~~L~ 632 (780)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 55667777775
No 216
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.55 E-value=7.1e-05 Score=75.77 Aligned_cols=48 Identities=21% Similarity=0.278 Sum_probs=34.9
Q ss_pred ccccCCchHHHHHHHHHHc---c---------CCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 150 YEQFESRMPTFQDIMEALK---D---------DNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
..+++|.+..++.+.+.+. . ...+-+.|+|++|+|||++|+.+++...
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 4567888776666655443 1 1233478999999999999999998764
No 217
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.54 E-value=0.0008 Score=73.15 Aligned_cols=181 Identities=15% Similarity=0.164 Sum_probs=96.5
Q ss_pred CccccCCchHHHHHHHHHHc---cC---------CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH
Q 037947 149 GYEQFESRMPTFQDIMEALK---DD---------NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY 216 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~---~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (780)
...+++|.++.++++.+.+. .. ..+-|.|+|++|+|||+||+.++...... .+.++.+.-...
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~~~~~ 88 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSDFVEL 88 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGGTTTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHHHHHH
Confidence 34568898877666655432 21 23458899999999999999999876422 233443332110
Q ss_pred HHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcccccc--cc-------CCccccccccc--CCCC
Q 037947 217 KAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLDLDA--VG-------IPYKNYQNEIK--DDRR 285 (780)
Q Consensus 217 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~~--l~-------~~~~~~~~~l~--~~~~ 285 (780)
+ .. .........+.....+.+.+|+||+++....-.. .. ..+..++..+. ....
T Consensus 89 ----------~----~g-~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~ 153 (476)
T 2ce7_A 89 ----------F----VG-VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE 153 (476)
T ss_dssp ----------C----TT-HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG
T ss_pred ----------H----hc-ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC
Confidence 0 00 0011122233334456789999999965421000 00 00000011110 1223
Q ss_pred CcEEEEEecchhHHh-hhcC---CcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 286 RCAMLLTSRRKDLLY-NEMN---SQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 286 ~s~iivTtr~~~v~~-~~~~---~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
+..||.||....... .... -...+.+++.+.++-.+++..++......++.. ...|++.+.|..
T Consensus 154 ~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~--l~~la~~t~G~s 221 (476)
T 2ce7_A 154 GIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN--LEIIAKRTPGFV 221 (476)
T ss_dssp TEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC--HHHHHHTCTTCC
T ss_pred CEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh--HHHHHHhcCCCc
Confidence 556777777664421 1111 223788888888888888877765332222111 345778888876
No 218
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.53 E-value=0.00099 Score=73.04 Aligned_cols=181 Identities=13% Similarity=0.159 Sum_probs=99.7
Q ss_pred ccccCCchHHHHHHHHHHc-------------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH
Q 037947 150 YEQFESRMPTFQDIMEALK-------------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY 216 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~-------------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (780)
..+++|.+..++++.+++. ....+-|.|+|++|+|||++|+.+++.... ..+.++++.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~~~---- 273 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE---- 273 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEHHH----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEchH----
Confidence 4568899999888887764 134567899999999999999999876521 123333221
Q ss_pred HHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc-------------cccccCCcccccccccCC
Q 037947 217 KAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD-------------LDAVGIPYKNYQNEIKDD 283 (780)
Q Consensus 217 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~l~~~ 283 (780)
+...+ .... .......+...-.+++.+|+||+++.... ...+...+ +. ...
T Consensus 274 ------l~~~~----~g~~-~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~l----d~-~~~ 337 (489)
T 3hu3_A 274 ------IMSKL----AGES-ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLM----DG-LKQ 337 (489)
T ss_dssp ------HHTSC----TTHH-HHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHH----HH-SCT
T ss_pred ------hhhhh----cchh-HHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHh----hc-ccc
Confidence 11111 0000 11222233334456788999999843311 00111111 11 012
Q ss_pred CCCcEEEEEecchhHH-hhhc---CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCC-hHHHHHH
Q 037947 284 RRRCAMLLTSRRKDLL-YNEM---NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGL-PVAITTV 357 (780)
Q Consensus 284 ~~~s~iivTtr~~~v~-~~~~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~Gl-PLai~~~ 357 (780)
..+..||.||...... .... .-...+.+.+.+.++-.+++..++........ ....++++.+.|. +-.+..+
T Consensus 338 ~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHVGADLAAL 414 (489)
T ss_dssp TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHHHH
T ss_pred CCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch--hhHHHHHHHccCCcHHHHHHH
Confidence 3345666677665321 1111 12346889999999999999988763322211 1134566667764 4444433
No 219
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.42 E-value=0.0007 Score=74.04 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=36.6
Q ss_pred ccccCCchHHHHHHHHH---HccC--CccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 150 YEQFESRMPTFQDIMEA---LKDD--NINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~---L~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
..+++|.++.++.+..+ +... ..+-+.++|++|+|||++|+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 36788998887765444 3332 235789999999999999999998864
No 220
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.41 E-value=0.00038 Score=72.06 Aligned_cols=104 Identities=15% Similarity=0.269 Sum_probs=60.1
Q ss_pred ccCCchHHHHHHHHHHccC---------CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHH
Q 037947 152 QFESRMPTFQDIMEALKDD---------NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNE 222 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 222 (780)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++..... -...+.++++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeecccccccc-cHHH
Confidence 4678888888888777531 13579999999999999999999986432 1234555655433221 1111
Q ss_pred HHHHcCCCcCCCCCHHHHHHHHHHHhcc-CcEEEEEeCCCCc
Q 037947 223 IAGALGLFLGEHEDVSERAHLLRQRLKA-SRVLVILDDVWNR 263 (780)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~ 263 (780)
+ ++....... ... ...+...+.. ..-+++||++...
T Consensus 95 l---~g~~~~~~~-~~~-~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 95 L---IGAPPGYVG-YEE-GGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp H---HCCCTTSTT-TTT-CCHHHHHHHHCSSEEEEEETGGGS
T ss_pred h---cCCCCcccc-ccc-cchHHHHHHhCCCeEEEEeChhhc
Confidence 2 222111100 000 0123333333 4479999999665
No 221
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.41 E-value=0.0021 Score=67.04 Aligned_cols=182 Identities=15% Similarity=0.193 Sum_probs=95.6
Q ss_pred CCccccCCchHHHHHHHHHHcc-----CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHH
Q 037947 148 RGYEQFESRMPTFQDIMEALKD-----DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNE 222 (780)
Q Consensus 148 ~~~~~~~gr~~~~~~l~~~L~~-----~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 222 (780)
.....++|.+..++.+...+.. .....+.++|++|+||||||+.++...... |. ..+.....
T Consensus 22 ~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~~-----~~sg~~~~------ 88 (334)
T 1in4_A 22 KSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--IH-----VTSGPVLV------ 88 (334)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--EE-----EEETTTCC------
T ss_pred ccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--EE-----EEechHhc------
Confidence 4456788988777776666542 234679999999999999999999976432 11 11111100
Q ss_pred HHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccc--cccccCCccccc-c----------cccCCCCCcEE
Q 037947 223 IAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLD--LDAVGIPYKNYQ-N----------EIKDDRRRCAM 289 (780)
Q Consensus 223 i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~-~----------~l~~~~~~s~i 289 (780)
...+.. .+...+ .++-++++|++..... .+.+...+.... . .+........+
T Consensus 89 -------------~~~~l~-~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 89 -------------KQGDMA-AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp -------------SHHHHH-HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred -------------CHHHHH-HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 011111 111112 2345778888754421 111110000000 0 00000011223
Q ss_pred E-EEecchhHHhhhcCC-cceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHH
Q 037947 290 L-LTSRRKDLLYNEMNS-QKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVA 358 (780)
Q Consensus 290 i-vTtr~~~v~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 358 (780)
+ .|++...+....... ...+.+++.+.++-.+++.+.+.... ...-.+.+..|++.+.|.|-.+..+.
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~-~~~~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-VEIEDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CCBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 2 344433322111111 23588999999999999988764211 12234678999999999997654443
No 222
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.26 E-value=0.0015 Score=72.85 Aligned_cols=165 Identities=16% Similarity=0.152 Sum_probs=79.2
Q ss_pred cccCCchHHHHHHHHHHc------cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHH
Q 037947 151 EQFESRMPTFQDIMEALK------DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~------~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 224 (780)
.+++|-+...+.+.+.+. ......+.++|++|+||||||+.++...... | ..++++...+..++.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK--F---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE--E---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC--e---EEEEecccchhhhhhhHHH
Confidence 346777776666655443 2345689999999999999999999887322 2 2233333222222111111
Q ss_pred HHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCcccc------ccccCCccccc-ccccCC-------CCCcEEE
Q 037947 225 GALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLDL------DAVGIPYKNYQ-NEIKDD-------RRRCAML 290 (780)
Q Consensus 225 ~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~------~~l~~~~~~~~-~~l~~~-------~~~s~ii 290 (780)
...+. ................-+++||++.....- ..+...+.... ..+.+. ..+..||
T Consensus 156 ~~ig~-------~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 156 TYVGA-------MPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp ---------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HHhcc-------CchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 11110 000111111112224448999999765321 12211111000 000000 1345666
Q ss_pred EEecchhHH-hhhcCCcceEEcCCCChHHHHHHHHHhh
Q 037947 291 LTSRRKDLL-YNEMNSQKNFLINVLSDQEAVQLFEKMS 327 (780)
Q Consensus 291 vTtr~~~v~-~~~~~~~~~~~l~~L~~~~~~~Lf~~~~ 327 (780)
.||...... .........+.+.+++.++-.+++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 676654321 1122233578999999998888887654
No 223
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.22 E-value=6.5e-05 Score=67.87 Aligned_cols=45 Identities=9% Similarity=0.093 Sum_probs=33.2
Q ss_pred ccCCchHHHHHHHHHHcc--CCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 152 QFESRMPTFQDIMEALKD--DNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.++|+...++++.+.+.. ....-|.|+|++|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 578998888888877652 333457899999999999999987643
No 224
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.21 E-value=0.00023 Score=64.62 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=30.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ 212 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 212 (780)
....+.|+|+.|+|||||++.++......+ + .++++....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g-~-~~~~~~~~~ 74 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAG-K-NAAYIDAAS 74 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTT-C-CEEEEETTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcC-C-cEEEEcHHH
Confidence 567899999999999999999999876431 1 255665443
No 225
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.21 E-value=0.0013 Score=75.75 Aligned_cols=179 Identities=13% Similarity=0.166 Sum_probs=94.8
Q ss_pred ccccCCchHHHHHHHHHHc----c---------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH
Q 037947 150 YEQFESRMPTFQDIMEALK----D---------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY 216 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (780)
..++.|-++.+++|.+++. . ...+-|.++|++|+|||+||+.+++..... .+.|+.+.
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~~---- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE---- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHHH----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhHH----
Confidence 4556677776666665542 1 235679999999999999999999865322 23343221
Q ss_pred HHHHHHHHHHcCCCcCCCCCHHHHHHH-HHHHhccCcEEEEEeCCCCccccc-c--------ccCCcccccccccCCCCC
Q 037947 217 KAIQNEIAGALGLFLGEHEDVSERAHL-LRQRLKASRVLVILDDVWNRLDLD-A--------VGIPYKNYQNEIKDDRRR 286 (780)
Q Consensus 217 ~~~~~~i~~~l~~~~~~~~~~~~~~~~-l~~~L~~kr~LlVlDdv~~~~~~~-~--------l~~~~~~~~~~l~~~~~~ 286 (780)
+.. ..... .+...+. +....+..+.+|+||+++....-. . +...+-..+..+. ...+
T Consensus 274 ------l~s----k~~ge--se~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~-~~~~ 340 (806)
T 3cf2_A 274 ------IMS----KLAGE--SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAH 340 (806)
T ss_dssp ------HHS----SCTTH--HHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC-GGGC
T ss_pred ------hhc----ccchH--HHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc-ccCC
Confidence 111 00010 1122222 222334578999999996542100 0 0000000011111 1234
Q ss_pred cEEEEEecchhHHhhhc----CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChH
Q 037947 287 CAMLLTSRRKDLLYNEM----NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPV 352 (780)
Q Consensus 287 s~iivTtr~~~v~~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPL 352 (780)
..||.||.......... .-...+++...+.++-.++|..+........+. -...|++++.|.--
T Consensus 341 V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv--dl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHVG 408 (806)
T ss_dssp EEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTC--CHHHHHHHCCSCCH
T ss_pred EEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhcCCCCH
Confidence 45666666554321111 123568888888888888888776532222211 14567788887653
No 226
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.13 E-value=0.00047 Score=68.86 Aligned_cols=59 Identities=29% Similarity=0.506 Sum_probs=26.7
Q ss_pred ccCCCcEEEeecCCCCcc---ChhhcCCCCCCEEecCCCCCCcccCccccCCCc--ccceeeccCCC
Q 037947 601 ALKKLVILSFRNSHIEQL---PEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLP--RLEELYMGNSF 662 (780)
Q Consensus 601 ~l~~L~~L~l~~~~l~~l---p~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~--~L~~L~l~~~~ 662 (780)
++++|++|+|++|.+..+ |..+..+++|++|+|++ |.++.+. .+..+. +|++|++.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~--~l~~l~~l~L~~L~L~~Np 231 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSER--ELDKIKGLKLEELWLDGNS 231 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGG--GGGGGTTSCCSEEECTTST
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCch--hhhhcccCCcceEEccCCc
Confidence 344445555554444432 23344455555555554 4444431 122232 55555555554
No 227
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.00 E-value=0.0021 Score=65.97 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=36.7
Q ss_pred ccCCchHHHHHHHHHHcc--CCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 152 QFESRMPTFQDIMEALKD--DNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.++|+...+.++.+.+.. .....|.|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 478998888888887752 344567899999999999999999865
No 228
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.95 E-value=0.00092 Score=78.26 Aligned_cols=154 Identities=15% Similarity=0.222 Sum_probs=81.3
Q ss_pred cccCCchHHHHHHHHHHcc-------C--CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHH
Q 037947 151 EQFESRMPTFQDIMEALKD-------D--NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQN 221 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~~-------~--~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~ 221 (780)
..++|.+..++.+...+.. + ....+.++|++|+|||++|+.+++..... -...+.++++.-.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~--- 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHS--- 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCC---
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhcccccc---
Confidence 4578999988888887762 1 12369999999999999999999987332 22345555554221000
Q ss_pred HHHHHcCCCcCCCCCHHHHHHHHHHHhcc-CcEEEEEeCCCCccc--cccccCCccc--cc--ccccCCCCCcEEEEEec
Q 037947 222 EIAGALGLFLGEHEDVSERAHLLRQRLKA-SRVLVILDDVWNRLD--LDAVGIPYKN--YQ--NEIKDDRRRCAMLLTSR 294 (780)
Q Consensus 222 ~i~~~l~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVlDdv~~~~~--~~~l~~~~~~--~~--~~l~~~~~~s~iivTtr 294 (780)
.. ...+...++. ..-+|+||++..... ...+...+.. +. ..-.....+..||+||.
T Consensus 566 -----------~~------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 566 -----------TS------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp -----------CC---------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred -----------cc------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 00 0111222222 334899999966521 1111111100 00 00001223568888887
Q ss_pred chh-----H--------HhhhcCC-cceEEcCCCChHHHHHHHHHh
Q 037947 295 RKD-----L--------LYNEMNS-QKNFLINVLSDQEAVQLFEKM 326 (780)
Q Consensus 295 ~~~-----v--------~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~ 326 (780)
... + ....... ...+.+.|++.++-.+++...
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 311 0 0111122 247889999988877776654
No 229
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.88 E-value=0.00065 Score=68.96 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=47.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEE--ccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhc
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVV--SQKPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLK 249 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 249 (780)
.+++.|+|++|+|||+||..++... -..++|+++ ....+. .. .+.+.....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~-----G~~VlyIs~~~eE~v~~---------------~~-~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEAL-----GGKDKYATVRFGEPLSG---------------YN-TDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHH-----HTTSCCEEEEBSCSSTT---------------CB-CCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhC-----CCCEEEEEecchhhhhh---------------hh-cCHHHHHHHHHHHHh
Confidence 3578899999999999999998861 123456776 222110 00 235666667777777
Q ss_pred cCcEEEEEeCCCCc
Q 037947 250 ASRVLVILDDVWNR 263 (780)
Q Consensus 250 ~kr~LlVlDdv~~~ 263 (780)
+.+ +||+|++...
T Consensus 182 ~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 182 QHR-VIVIDSLKNV 194 (331)
T ss_dssp HCS-EEEEECCTTT
T ss_pred hCC-EEEEeccccc
Confidence 767 9999998553
No 230
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.83 E-value=0.016 Score=57.56 Aligned_cols=180 Identities=14% Similarity=0.111 Sum_probs=86.3
Q ss_pred CccccCCchHHHHHHHHHHc---c---------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH
Q 037947 149 GYEQFESRMPTFQDIMEALK---D---------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY 216 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (780)
...+++|.+....++.+... . .-.+-+.|+|++|+||||||+.++..... ..+.++..
T Consensus 14 ~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~~----- 83 (254)
T 1ixz_A 14 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS----- 83 (254)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH-----
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeHH-----
Confidence 34567787765555443322 1 01223899999999999999999987641 22333221
Q ss_pred HHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhc-cCcEEEEEeCCCCccccc---------cccCCcccccccccCC--C
Q 037947 217 KAIQNEIAGALGLFLGEHEDVSERAHLLRQRLK-ASRVLVILDDVWNRLDLD---------AVGIPYKNYQNEIKDD--R 284 (780)
Q Consensus 217 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~~~~---------~l~~~~~~~~~~l~~~--~ 284 (780)
++ ..... . . .......+.+... ....++++|++....... .....+..++..+..+ .
T Consensus 84 -~~----~~~~~----~-~-~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 84 -DF----VEMFV----G-V-GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp -HH----HHSCT----T-H-HHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred -HH----HHHHh----h-H-HHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 11 11100 0 0 1112222333322 356899999984321100 0000000111111111 1
Q ss_pred CCcEEEEEecchhHHhhh-c---CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 285 RRCAMLLTSRRKDLLYNE-M---NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 285 ~~s~iivTtr~~~v~~~~-~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
...-++.||....+.... . .-...+.++..+.++-.+++...+......++. ....+++.+.|.-
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 221 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 221 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCccc--CHHHHHHHcCCCC
Confidence 223445566665543111 1 123468888888888888887766432211111 1335666666643
No 231
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.83 E-value=0.0083 Score=65.59 Aligned_cols=177 Identities=15% Similarity=0.162 Sum_probs=92.4
Q ss_pred CccccCCchHHHHHHHHHH---ccC---------CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH
Q 037947 149 GYEQFESRMPTFQDIMEAL---KDD---------NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY 216 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L---~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (780)
...+++|.++.+.++.+.. ... -.+-|.|+|++|+||||||+.++..... ..+.++.+.-.+
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~- 102 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVE- 102 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTS-
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHHHH-
Confidence 4567889887766655543 221 1234899999999999999999987631 233444332110
Q ss_pred HHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhcc----CcEEEEEeCCCCcccccc--c-------cCCcccccccccC-
Q 037947 217 KAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKA----SRVLVILDDVWNRLDLDA--V-------GIPYKNYQNEIKD- 282 (780)
Q Consensus 217 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~----kr~LlVlDdv~~~~~~~~--l-------~~~~~~~~~~l~~- 282 (780)
.. .......+...++. .+.++++|++.....-.. . ...+..++..+..
T Consensus 103 -------------~~-----~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 -------------MF-----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp -------------SC-----TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred -------------hh-----hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 00 11122334444443 347999999954321000 0 0000011111111
Q ss_pred -CCCCcEEEEEecchhHHhhh-c---CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 283 -DRRRCAMLLTSRRKDLLYNE-M---NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 283 -~~~~s~iivTtr~~~v~~~~-~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
...+..|+.||....+.... . .-...+.++..+.++-.+++..++......++. ....|++.+.|..
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv--~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSS--TTHHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHH--HHHHHHHhcCCCC
Confidence 12334555566665543111 1 123478888888888888888776432211111 1345677777765
No 232
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.81 E-value=0.0047 Score=59.92 Aligned_cols=87 Identities=22% Similarity=0.197 Sum_probs=53.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCC---------cCCCCCH---H
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLF---------LGEHEDV---S 238 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~---------~~~~~~~---~ 238 (780)
...++.|+|++|+||||||..++. . . -..++|++.....+...+.. +.+.++.. .....+. .
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~--~--~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L--S--GKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H--H--CSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H--c--CCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 456899999999999999999988 2 1 34688888776556655543 33333221 0011111 2
Q ss_pred HHHHHHHHHhccCcEEEEEeCCCCc
Q 037947 239 ERAHLLRQRLKASRVLVILDDVWNR 263 (780)
Q Consensus 239 ~~~~~l~~~L~~kr~LlVlDdv~~~ 263 (780)
.....++..+..+.-+||+|.+...
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~~~ 117 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSITAH 117 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCCCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcHHH
Confidence 2344444444445779999987544
No 233
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.71 E-value=0.014 Score=58.75 Aligned_cols=156 Identities=13% Similarity=0.176 Sum_probs=80.1
Q ss_pred ccccCCchHHHHHHHHHHc----c---------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC-
Q 037947 150 YEQFESRMPTFQDIMEALK----D---------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD- 215 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~----~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~- 215 (780)
..++.|-++.+++|.+.+. . .-.+-+.++|++|+||||||+.++..... ..+++..+.-.+
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM 83 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh
Confidence 4456677777776665432 0 11223999999999999999999986532 233443222111
Q ss_pred -HHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCccccc------cccCCcccccccccC--CCC
Q 037947 216 -YKAIQNEIAGALGLFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNRLDLD------AVGIPYKNYQNEIKD--DRR 285 (780)
Q Consensus 216 -~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~~~~~------~l~~~~~~~~~~l~~--~~~ 285 (780)
..+ .......+.+.. ...+.++++|++....... ........+...+.. ...
T Consensus 84 ~~~~------------------~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~ 145 (274)
T 2x8a_A 84 YVGE------------------SERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ 145 (274)
T ss_dssp TTHH------------------HHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT
T ss_pred hhhH------------------HHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC
Confidence 000 111122222222 3467899999996532110 000000001111111 122
Q ss_pred CcEEEEEecchhHHhhh-c---CCcceEEcCCCChHHHHHHHHHhhC
Q 037947 286 RCAMLLTSRRKDLLYNE-M---NSQKNFLINVLSDQEAVQLFEKMSG 328 (780)
Q Consensus 286 ~s~iivTtr~~~v~~~~-~---~~~~~~~l~~L~~~~~~~Lf~~~~~ 328 (780)
..-++.+|....+.... . .-...+.++..+.++-.++|.....
T Consensus 146 ~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 146 QVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp CEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 34455667666553211 1 2345678888888888888887663
No 234
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.66 E-value=0.019 Score=58.07 Aligned_cols=180 Identities=14% Similarity=0.122 Sum_probs=87.6
Q ss_pred CccccCCchHHHHHHHHHHc---c---------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH
Q 037947 149 GYEQFESRMPTFQDIMEALK---D---------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY 216 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~---~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (780)
...+++|.++.++++.+... . .-.+-+.|+|++|+||||||+.++..... ..+.++..
T Consensus 38 ~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-----~~i~~~~~----- 107 (278)
T 1iy2_A 38 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS----- 107 (278)
T ss_dssp CGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH-----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC-----CEEEecHH-----
Confidence 35678888776655544332 1 01123899999999999999999987641 22333321
Q ss_pred HHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhc-cCcEEEEEeCCCCcccc---------ccccCCcccccccccCCC--
Q 037947 217 KAIQNEIAGALGLFLGEHEDVSERAHLLRQRLK-ASRVLVILDDVWNRLDL---------DAVGIPYKNYQNEIKDDR-- 284 (780)
Q Consensus 217 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~-~kr~LlVlDdv~~~~~~---------~~l~~~~~~~~~~l~~~~-- 284 (780)
++ ..... . . .......+.+... ..+.++++|++...... ......+..++..+..+.
T Consensus 108 -~~----~~~~~----~-~-~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 108 -DF----VEMFV----G-V-GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp -HH----HHSTT----T-H-HHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred -HH----HHHHh----h-H-HHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 11 11000 0 0 1111222222222 35689999998432100 000000001111111111
Q ss_pred CCcEEEEEecchhHHhhh-c---CCcceEEcCCCChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCCh
Q 037947 285 RRCAMLLTSRRKDLLYNE-M---NSQKNFLINVLSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLP 351 (780)
Q Consensus 285 ~~s~iivTtr~~~v~~~~-~---~~~~~~~l~~L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlP 351 (780)
....++.||....+.... . .-...+.+++.+.++-.+++...+......++. ....++..+.|..
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDV--DLALLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCccc--CHHHHHHHcCCCC
Confidence 223445566655443111 1 233578888888888888888766432211111 1334666666654
No 235
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.66 E-value=0.0076 Score=64.47 Aligned_cols=227 Identities=13% Similarity=0.088 Sum_probs=107.7
Q ss_pred cCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCC-ccccCCCCCCEEEccCccCCCcccccccCCCcEE
Q 037947 530 LECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP-STLGCLINLQTLSFECCVLGDVATVGALKKLVIL 608 (780)
Q Consensus 530 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~~~~i~~l~~L~~L 608 (780)
..|.+|+.+.+..+.. .++...|.++..|+.+++..+ ++.++ ..+..+..|+.+.+..+............+|+.+
T Consensus 159 ~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i 235 (394)
T 4fs7_A 159 ATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNI 235 (394)
T ss_dssp TTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEE
T ss_pred cccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceE
Confidence 3667777777654432 355566667777777766543 33332 3444556666655544321111122233455555
Q ss_pred EeecCCCCccC-hhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCCccccccCCccchhhhcCCCCCCEE
Q 037947 609 SFRNSHIEQLP-EEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFTHWEIEGQNNASLAELNQLSRLTTL 687 (780)
Q Consensus 609 ~l~~~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~~L 687 (780)
.+..+ +..++ ..+..+.+|+.+.+.. ....+....+..+..++.+....+. ++ -..+..+.+|+.+
T Consensus 236 ~ip~~-~~~i~~~~f~~~~~l~~~~~~~--~~~~i~~~~F~~~~~l~~~~~~~~~----i~------~~~F~~~~~L~~i 302 (394)
T 4fs7_A 236 IIPDS-FTELGKSVFYGCTDLESISIQN--NKLRIGGSLFYNCSGLKKVIYGSVI----VP------EKTFYGCSSLTEV 302 (394)
T ss_dssp EECTT-CCEECSSTTTTCSSCCEEEECC--TTCEECSCTTTTCTTCCEEEECSSE----EC------TTTTTTCTTCCEE
T ss_pred EECCC-ceecccccccccccceeEEcCC--CcceeeccccccccccceeccCcee----ec------ccccccccccccc
Confidence 55432 23332 2344556666666654 2333444445555556555543321 11 0223445566666
Q ss_pred EeeccCCCCCCccc--cccCccEEEEEecC--c-ccccccccccceeEeecCCCccchhHHHHHhcccceeecccccccc
Q 037947 688 EMHILDAQVMPREL--FSVGLERYKIFLGD--V-WSWTGKYETSRTLKLKLDNPMYLEHGIKMLLRRTEDLHLDKLNGFQ 762 (780)
Q Consensus 688 ~l~~~~~~~~~~~~--~~~~L~~L~i~~~~--~-~~~~~~~~~l~~l~L~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~ 762 (780)
.+..+ +..++... .+.+|+++.+...- . ...+..+.+|+.+.+..+ ........+..+++|+.+.+.. .++
T Consensus 303 ~l~~~-i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~--~~~ 378 (394)
T 4fs7_A 303 KLLDS-VKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK--RLE 378 (394)
T ss_dssp EECTT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG--GGG
T ss_pred ccccc-cceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC--CCE
Confidence 65422 33343333 44566666653210 0 012344555555544221 1112222233357788887754 344
Q ss_pred ccccccCCCcccCccC
Q 037947 763 NVLHELDGEGFPRLKH 778 (780)
Q Consensus 763 ~~~~~~~~~~fp~L~~ 778 (780)
.+...| .++++|+.
T Consensus 379 ~~~~~F--~~c~~L~~ 392 (394)
T 4fs7_A 379 QYRYDF--EDTTKFKW 392 (394)
T ss_dssp GGGGGB--CTTCEEEE
T ss_pred Ehhhee--cCCCCCcE
Confidence 444444 45666664
No 236
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.63 E-value=0.016 Score=61.92 Aligned_cols=61 Identities=26% Similarity=0.315 Sum_probs=36.7
Q ss_pred cccccCCCcEEEeecCCCCccCh-hhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCC
Q 037947 598 TVGALKKLVILSFRNSHIEQLPE-EIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNS 661 (780)
Q Consensus 598 ~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 661 (780)
.+.++.+|+.+.+.++ +..++. .+..+.+|+.+.+.. .++.+....+.++..|+.+.+..+
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~~ 218 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPNS 218 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCTT
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC--CceEeCchhhccccccceeecCCC
Confidence 4556677777777543 344443 355667777777764 355555555666666766665443
No 237
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.46 E-value=0.0074 Score=59.09 Aligned_cols=117 Identities=14% Similarity=0.131 Sum_probs=62.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcC------------------
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLG------------------ 232 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~------------------ 232 (780)
...+++|+|++|+|||||++.++...... -..++|+.... ...++...+. .++....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKE 96 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccC
Confidence 34689999999999999999998765433 12456665433 4444444332 3332211
Q ss_pred -----CCCCHHHHHHHHHHHhcc-CcE--EEEEeCCCCcc--ccccccCCcccccccccC--CCCCcEEEEEecch
Q 037947 233 -----EHEDVSERAHLLRQRLKA-SRV--LVILDDVWNRL--DLDAVGIPYKNYQNEIKD--DRRRCAMLLTSRRK 296 (780)
Q Consensus 233 -----~~~~~~~~~~~l~~~L~~-kr~--LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~--~~~~s~iivTtr~~ 296 (780)
...+..+....+...+.. +.- +||+|...... +-... ..+...+.. ...|..||++|...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~----~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 97 DQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMA----RKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGH----HHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred ceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHH----HHHHHHHHHHHHhCCCeEEEEeccC
Confidence 111345555555555533 444 99999986432 11110 001111111 23477888888765
No 238
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.43 E-value=0.015 Score=58.74 Aligned_cols=85 Identities=11% Similarity=0.067 Sum_probs=56.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCC-----CCCHHHH-HHHHHHH
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGE-----HEDVSER-AHLLRQR 247 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~-~~~l~~~ 247 (780)
++-|.|++|+||||||.++......+..-..++|++....++.. .++.++..... +.+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999998776543112468899988887754 36777765432 2234444 3322222
Q ss_pred --hc-cCcEEEEEeCCCCc
Q 037947 248 --LK-ASRVLVILDDVWNR 263 (780)
Q Consensus 248 --L~-~kr~LlVlDdv~~~ 263 (780)
++ ++.-++|+|-|...
T Consensus 105 ~~i~~~~~~lvVIDSI~aL 123 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNL 123 (333)
T ss_dssp HTCCTTCCEEEEEECSTTC
T ss_pred HHhhccCceEEEEeccccc
Confidence 33 46789999998654
No 239
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.39 E-value=0.012 Score=58.13 Aligned_cols=92 Identities=12% Similarity=0.038 Sum_probs=56.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccC----CCCeEEEEEEccCCCHHHHHHHHHHHcCCCcC---------CCCCH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDK----LFDEVVMVVVSQKPDYKAIQNEIAGALGLFLG---------EHEDV 237 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 237 (780)
...++.|+|++|+|||||+..++....... .-..++|++....++..++. ++++.++.... ...+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 346899999999999999999988643211 13568888877765555443 34455543320 11122
Q ss_pred HH---HHHHHHHHhcc-CcEEEEEeCCCCc
Q 037947 238 SE---RAHLLRQRLKA-SRVLVILDDVWNR 263 (780)
Q Consensus 238 ~~---~~~~l~~~L~~-kr~LlVlDdv~~~ 263 (780)
.+ ....+.+.+.. +.-+||+|++...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~ 131 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATAL 131 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHH
Confidence 22 23335555543 6779999987543
No 240
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.38 E-value=0.013 Score=61.02 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=58.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcC-----CCCCHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLG-----EHEDVSERAHLLR 245 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 245 (780)
...++.|+|++|+||||||..++...... -..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 34799999999999999999999876543 2357888877776654 4555554322 1233555555565
Q ss_pred HHhc-cCcEEEEEeCCCCc
Q 037947 246 QRLK-ASRVLVILDDVWNR 263 (780)
Q Consensus 246 ~~L~-~kr~LlVlDdv~~~ 263 (780)
..++ .+.-++|+|.+...
T Consensus 133 ~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp HHHHTSCCSEEEEECTTTC
T ss_pred HHhhhcCCCeEEehHhhhh
Confidence 5554 45569999998544
No 241
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.35 E-value=0.017 Score=60.63 Aligned_cols=86 Identities=19% Similarity=0.219 Sum_probs=58.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcC-----CCCCHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLG-----EHEDVSERAHLLR 245 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 245 (780)
...++.|.|.+|+||||||..+....... -..++|++....++.. .+..++.... ...+.++....+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 34689999999999999999998876543 2468999988776644 2445554321 1223555555665
Q ss_pred HHhcc-CcEEEEEeCCCCc
Q 037947 246 QRLKA-SRVLVILDDVWNR 263 (780)
Q Consensus 246 ~~L~~-kr~LlVlDdv~~~ 263 (780)
...+. ..-+||+|.+...
T Consensus 146 ~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp HHHTTTCCSEEEEECTTTC
T ss_pred HHHhcCCCCEEEEeChHHh
Confidence 55544 4559999998543
No 242
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.33 E-value=0.022 Score=66.61 Aligned_cols=159 Identities=14% Similarity=0.189 Sum_probs=84.1
Q ss_pred CccccCCchHHHHHHHHHHcc-------------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC
Q 037947 149 GYEQFESRMPTFQDIMEALKD-------------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD 215 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (780)
...+++|.+..++++.+++.. .....|.|+|++|+||||||+.++...... .+.++.+.
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~-----~i~v~~~~--- 273 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE--- 273 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE-----EEEEEHHH---
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc-----EEEEEchH---
Confidence 346688988888887777641 234679999999999999999998764221 23333211
Q ss_pred HHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhccCcEEEEEeCCCCccccc---------cccCCcccccccccCCCCC
Q 037947 216 YKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLKASRVLVILDDVWNRLDLD---------AVGIPYKNYQNEIKDDRRR 286 (780)
Q Consensus 216 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVlDdv~~~~~~~---------~l~~~~~~~~~~l~~~~~~ 286 (780)
+. ....... .......+.......+.++++|++.....-. .+...+..+...+. ...+
T Consensus 274 -------l~----~~~~g~~-~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~~~~ 340 (806)
T 1ypw_A 274 -------IM----SKLAGES-ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-QRAH 340 (806)
T ss_dssp -------HS----SSSTTHH-HHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-TTSC
T ss_pred -------hh----hhhhhhH-HHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-cccc
Confidence 10 0000000 1112222333334577899999985432100 00000000000001 1234
Q ss_pred cEEEEEecchhHHhhhc----CCcceEEcCCCChHHHHHHHHHhhC
Q 037947 287 CAMLLTSRRKDLLYNEM----NSQKNFLINVLSDQEAVQLFEKMSG 328 (780)
Q Consensus 287 s~iivTtr~~~v~~~~~----~~~~~~~l~~L~~~~~~~Lf~~~~~ 328 (780)
..+|.||.......... .-...+.+...+.++-.+++...+.
T Consensus 341 v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 341 VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp CEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred EEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 45666666543221111 1224577888889999999987765
No 243
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.32 E-value=0.0069 Score=62.19 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=35.7
Q ss_pred HHHHHHHHHHccC---CccEEEEEcCCCChHHHHHHHHHHHHh-ccCCCCeEEEEEEc
Q 037947 158 PTFQDIMEALKDD---NINVIGIYGIGGVGKTTLVKQVARRVM-EDKLFDEVVMVVVS 211 (780)
Q Consensus 158 ~~~~~l~~~L~~~---~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs 211 (780)
..++.+.+++... ....+.|+|++|+|||+||..+++... .. -..+.+++++
T Consensus 135 ~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~--g~~v~~~~~~ 190 (308)
T 2qgz_A 135 EAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK--GVSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS--CCCEEEEEHH
T ss_pred HHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc--CCcEEEEEHH
Confidence 3444555565532 246889999999999999999999876 44 2235555543
No 244
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.30 E-value=0.0071 Score=70.82 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=41.4
Q ss_pred cccCCchHHHHHHHHHHcc---------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc
Q 037947 151 EQFESRMPTFQDIMEALKD---------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ 212 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~~---------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 212 (780)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++... ...+.++.+.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~ 523 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSE 523 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGG
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechh
Confidence 3577888888888777651 1224789999999999999999998772 2344555554
No 245
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.29 E-value=0.0035 Score=63.96 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
.+.+.++|++|+|||+||+.+++...
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46788999999999999999999874
No 246
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.25 E-value=0.022 Score=59.49 Aligned_cols=91 Identities=12% Similarity=0.139 Sum_probs=57.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccC----CCCeEEEEEEccCCCHHHHHHHHHHHcCCCcC---------CCCC-
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDK----LFDEVVMVVVSQKPDYKAIQNEIAGALGLFLG---------EHED- 236 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~- 236 (780)
...++.|+|++|+||||||..++....... .-..++|++....++...+.. ++..++.... ...+
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 457899999999999999999988743211 124688999888777766543 4455554321 1111
Q ss_pred --HHHHHHHHHHHhc---cCcEEEEEeCCCC
Q 037947 237 --VSERAHLLRQRLK---ASRVLVILDDVWN 262 (780)
Q Consensus 237 --~~~~~~~l~~~L~---~kr~LlVlDdv~~ 262 (780)
..+....+...+. .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 1223334444444 3455888888743
No 247
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.15 E-value=0.02 Score=58.25 Aligned_cols=86 Identities=19% Similarity=0.160 Sum_probs=48.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc-CCCHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHhc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-KPDYKAIQNEIAGALGLFLGEHEDVSERAHLLRQRLK 249 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L~ 249 (780)
+..+++++|++|+||||++..++........ ..+..+.... .....+.+....+..+.......+.......+. .+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~-~~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKE-LF- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHH-HG-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHH-Hh-
Confidence 4579999999999999999999988764211 2344554332 223333444444444433222222333333333 33
Q ss_pred cCcEEEEEeC
Q 037947 250 ASRVLVILDD 259 (780)
Q Consensus 250 ~kr~LlVlDd 259 (780)
.+.=++|+|-
T Consensus 181 ~~~dlvIiDT 190 (296)
T 2px0_A 181 SEYDHVFVDT 190 (296)
T ss_dssp GGSSEEEEEC
T ss_pred cCCCEEEEeC
Confidence 3345788883
No 248
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.13 E-value=0.024 Score=59.15 Aligned_cols=86 Identities=17% Similarity=0.191 Sum_probs=57.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcC-----CCCCHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLG-----EHEDVSERAHLLR 245 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 245 (780)
...++.|+|++|+||||||.++....... -..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45789999999999999999998776543 2468899988776643 2455554322 1223455555454
Q ss_pred HHhcc-CcEEEEEeCCCCc
Q 037947 246 QRLKA-SRVLVILDDVWNR 263 (780)
Q Consensus 246 ~~L~~-kr~LlVlDdv~~~ 263 (780)
..... +.-+||+|.+...
T Consensus 133 ~l~~~~~~~lIVIDsl~~l 151 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAAL 151 (349)
T ss_dssp HHHTTTCCSEEEEECGGGC
T ss_pred HHHhcCCCCEEEEcChHhh
Confidence 44443 5669999998544
No 249
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.10 E-value=0.02 Score=59.80 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=55.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcC-----CCCCHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLG-----EHEDVSERAHLLR 245 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 245 (780)
...++.|.|.+|+||||||..++...... -..++|++....++.. .+..++.... ...+.++....+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 45789999999999999999998876544 2368899988777643 2445554321 1122444444444
Q ss_pred HHhc-cCcEEEEEeCCCC
Q 037947 246 QRLK-ASRVLVILDDVWN 262 (780)
Q Consensus 246 ~~L~-~kr~LlVlDdv~~ 262 (780)
...+ .+.-+||+|.+..
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 4433 3455999999744
No 250
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.08 E-value=0.02 Score=59.31 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=56.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccC---------CC-----CeEEEEEEccCCCHHHHHHHHHHHcCCCcC----
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDK---------LF-----DEVVMVVVSQKPDYKAIQNEIAGALGLFLG---- 232 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---- 232 (780)
...++.|+|.+|+||||||..++....... .. ..++|++....++..++.. +++.++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 357899999999999999999987642110 11 4688999888877776654 4455554321
Q ss_pred -----CCCCHH---HHHHHHHHHhcc--CcEEEEEeCCC
Q 037947 233 -----EHEDVS---ERAHLLRQRLKA--SRVLVILDDVW 261 (780)
Q Consensus 233 -----~~~~~~---~~~~~l~~~L~~--kr~LlVlDdv~ 261 (780)
...+.+ +....+...++. +.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 111222 233445555543 34588888874
No 251
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.03 E-value=0.023 Score=58.73 Aligned_cols=91 Identities=22% Similarity=0.259 Sum_probs=58.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCC----CCeEEEEEEccCCCHHHHHHHHHHHcCCCcC---------CCCCH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKL----FDEVVMVVVSQKPDYKAIQNEIAGALGLFLG---------EHEDV 237 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 237 (780)
...++.|+|++|+||||||..++........ -..++|++....++..++. ++++.++.... ...+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCH
Confidence 3578999999999999999999877532210 2468999988887777665 34555654321 11122
Q ss_pred H---HHHHHHHHHhc--cCcEEEEEeCCCC
Q 037947 238 S---ERAHLLRQRLK--ASRVLVILDDVWN 262 (780)
Q Consensus 238 ~---~~~~~l~~~L~--~kr~LlVlDdv~~ 262 (780)
+ +....+...++ .+.-+||+|.+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 2 23445555554 3556889998743
No 252
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.00 E-value=0.059 Score=56.23 Aligned_cols=166 Identities=10% Similarity=-0.032 Sum_probs=99.6
Q ss_pred HHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHHH
Q 037947 164 MEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAHL 243 (780)
Q Consensus 164 ~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 243 (780)
.+.+.+.-.++..++|+.|.||++.+..+.+..... .|+....+.+....++.++...+..
T Consensus 10 ~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~------------------ 70 (343)
T 1jr3_D 10 RAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSLCQA------------------ 70 (343)
T ss_dssp HHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHHHHH------------------
T ss_pred HHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHHhcC------------------
Confidence 334443456799999999999999999998876533 2433222233333444443332210
Q ss_pred HHHHhccCcEEEEEeCCCC-c--cccccccCCcccccccccCCCCCcEEEEEecc-------hhHHhhhcCCcceEEcCC
Q 037947 244 LRQRLKASRVLVILDDVWN-R--LDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRR-------KDLLYNEMNSQKNFLINV 313 (780)
Q Consensus 244 l~~~L~~kr~LlVlDdv~~-~--~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~-------~~v~~~~~~~~~~~~l~~ 313 (780)
.-+-+.+-++|+|++.. . ..++.+...+ ....+++.+|++|.. ..+..........++..+
T Consensus 71 --~plf~~~kvvii~~~~~kl~~~~~~aLl~~l-------e~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~ 141 (343)
T 1jr3_D 71 --MSLFASRQTLLLLLPENGPNAAINEQLLTLT-------GLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQT 141 (343)
T ss_dssp --HHHCCSCEEEEEECCSSCCCTTHHHHHHHHH-------TTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECC
T ss_pred --cCCccCCeEEEEECCCCCCChHHHHHHHHHH-------hcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeC
Confidence 11235667889999865 3 3333333222 334456777766543 223333344567899999
Q ss_pred CChHHHHHHHHHhhCCCCCCCChhHHHHHHHHHhCCChHHHHHHH
Q 037947 314 LSDQEAVQLFEKMSGVFEGPLDFQNLAIKIARECGGLPVAITTVA 358 (780)
Q Consensus 314 L~~~~~~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~GlPLai~~~~ 358 (780)
++.++..+.+.+.+.... -.--.+.++.+++.++|.+..+...-
T Consensus 142 l~~~~l~~~l~~~~~~~g-~~i~~~a~~~l~~~~~gdl~~~~~el 185 (343)
T 1jr3_D 142 PEQAQLPRWVAARAKQLN-LELDDAANQVLCYCYEGNLLALAQAL 185 (343)
T ss_dssp CCTTHHHHHHHHHHHHTT-CEECHHHHHHHHHSSTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHhchHHHHHHHHH
Confidence 999999888877664211 11123677889999999888776543
No 253
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.85 E-value=0.0087 Score=57.21 Aligned_cols=44 Identities=25% Similarity=0.333 Sum_probs=35.0
Q ss_pred CchHHHHHHHHHHcc---CCccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 155 SRMPTFQDIMEALKD---DNINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 155 gr~~~~~~l~~~L~~---~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
.|++.++.+.+.+.. ....+|+|.|++|+||||+++.+......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 355677778877763 34579999999999999999999887643
No 254
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.71 E-value=0.048 Score=58.22 Aligned_cols=29 Identities=34% Similarity=0.482 Sum_probs=25.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
+..+|.++|.+|+||||++..++.....+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46799999999999999999999887654
No 255
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.69 E-value=0.022 Score=59.10 Aligned_cols=99 Identities=15% Similarity=0.210 Sum_probs=54.1
Q ss_pred HHHHHHc-cCCccEEEEEcCCCChHHHHHHHHHHHHhcc-CCCCeEEEEEEccCCC-HHHHHHHHHHHcCCCcCCCCCHH
Q 037947 162 DIMEALK-DDNINVIGIYGIGGVGKTTLVKQVARRVMED-KLFDEVVMVVVSQKPD-YKAIQNEIAGALGLFLGEHEDVS 238 (780)
Q Consensus 162 ~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~~~~~~~ 238 (780)
+.++.+. -.+...++|+|++|+|||||++.+.+....+ ..+. ++++-+++... +.++.+.+-..+-....+++ ..
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~~Ev~~~~~~~~~~vV~atadep-~~ 240 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERPEEVTEMQRLVKGEVVASTFDEP-AS 240 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCHHHHHHHHTTCSSEEEEECTTSC-HH
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCChHHHHHHHHHhCeEEEEeCCCCC-HH
Confidence 4455554 2345689999999999999999998876433 1233 44677776542 23322222000000111111 11
Q ss_pred HHH------HHHHHHh--ccCcEEEEEeCCCC
Q 037947 239 ERA------HLLRQRL--KASRVLVILDDVWN 262 (780)
Q Consensus 239 ~~~------~~l~~~L--~~kr~LlVlDdv~~ 262 (780)
... -.+.+++ +++..||++||+..
T Consensus 241 ~r~~~a~~alt~AEyfrd~G~dVLil~DslTR 272 (422)
T 3ice_A 241 RHVQVAEMVIEKAKRLVEHKKDVIILLDSITR 272 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCEEEEEEECHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEEeCchH
Confidence 111 1123333 47999999999844
No 256
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.69 E-value=0.054 Score=70.54 Aligned_cols=88 Identities=18% Similarity=0.221 Sum_probs=53.2
Q ss_pred HHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCCCCHHHHHH
Q 037947 163 IMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEHEDVSERAH 242 (780)
Q Consensus 163 l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~ 242 (780)
+++.+...+ +-|.++|++|+|||++|+.+..... .+ ..+.++.+...+...+.+.+...+........
T Consensus 1259 ll~~~l~~~-~~vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g------- 1326 (2695)
T 4akg_A 1259 IFYDLLNSK-RGIILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKG------- 1326 (2695)
T ss_dssp HHHHHHHHT-CEEEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTT-------
T ss_pred HHHHHHHCC-CeEEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCC-------
Confidence 444433333 5678999999999999987765431 12 35667888887877777766665543210000
Q ss_pred HHHHH-hccCcEEEEEeCCCC
Q 037947 243 LLRQR-LKASRVLVILDDVWN 262 (780)
Q Consensus 243 ~l~~~-L~~kr~LlVlDdv~~ 262 (780)
.+..- -.+++.++++||+.-
T Consensus 1327 ~~~~P~~~gk~~VlFiDEinm 1347 (2695)
T 4akg_A 1327 LTLLPKSDIKNLVLFCDEINL 1347 (2695)
T ss_dssp EEEEEBSSSSCEEEEEETTTC
T ss_pred ccccCCCCCceEEEEeccccc
Confidence 00000 036789999999643
No 257
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.66 E-value=0.049 Score=58.43 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=49.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc-CCCHHHHHHHHHHHcCCCcCC---CCCHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-KPDYKAIQNEIAGALGLFLGE---HEDVSERAHLLRQ 246 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 246 (780)
+.++|.++|.+|+||||++..++.....+.. ..+..+.... .....+.+.......+..... ..+..........
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G-~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHK-KKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSC-CCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcC-CeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 4679999999999999999999988865411 2344454442 223333333344444432211 1234444344444
Q ss_pred HhccCcE-EEEEeCC
Q 037947 247 RLKASRV-LVILDDV 260 (780)
Q Consensus 247 ~L~~kr~-LlVlDdv 260 (780)
.++.+.| ++|+|-.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 4443333 6777864
No 258
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.62 E-value=0.011 Score=56.98 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcc--CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEc
Q 037947 158 PTFQDIMEALKD--DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVS 211 (780)
Q Consensus 158 ~~~~~l~~~L~~--~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 211 (780)
+.+++|.+.+.. +...+|+|+|+.|.|||||++.+.......+ ....+|...
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g--~~~g~v~~d 59 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQG--LPAEVVPMD 59 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT--CCEEEEESG
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC--CceEEEecC
Confidence 345566666653 4567999999999999999999988765321 124555544
No 259
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.54 E-value=0.01 Score=59.46 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=39.8
Q ss_pred ccccCCchHHHHHHHHHHc--cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC
Q 037947 150 YEQFESRMPTFQDIMEALK--DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK 213 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 213 (780)
...++|+...+.++.+.+. ......|.|+|++|+|||++|+.+++..... -...+.++++..
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~ 68 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAAL 68 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGS
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCC
Confidence 3457899988888877665 2333567899999999999999998865322 112345555543
No 260
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.46 E-value=0.011 Score=55.36 Aligned_cols=122 Identities=14% Similarity=0.143 Sum_probs=64.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC---CCHHHHHHHHH---HHcCC--CcCCCC------CHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK---PDYKAIQNEIA---GALGL--FLGEHE------DVS 238 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~~~~i~---~~l~~--~~~~~~------~~~ 238 (780)
..|.|++..|.||||.|--..-+....+ -.+.++..-+. ....+++..+. ...+. ...... ...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G--~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHG--KNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTT--CCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4566777777999999999988776542 24555544432 23333333330 00000 000100 012
Q ss_pred HHHHHHHHHhccCcE-EEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhH
Q 037947 239 ERAHLLRQRLKASRV-LVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDL 298 (780)
Q Consensus 239 ~~~~~l~~~L~~kr~-LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v 298 (780)
.......+.+.+.+| |||||++-....+..+. ...+.+.+........||+|+|...-
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~--~~ev~~~l~~Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLP--LEEVISALNARPGHQTVIITGRGCHR 165 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSC--HHHHHHHHHTSCTTCEEEEECSSCCH
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCC--HHHHHHHHHhCcCCCEEEEECCCCcH
Confidence 334556666666556 99999984432222111 11112222445567789999999643
No 261
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.36 E-value=0.015 Score=68.76 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=37.6
Q ss_pred cccCCchHHHHHHHHHHccC---------CccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 151 EQFESRMPTFQDIMEALKDD---------NINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~~~---------~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
..++|.+..++.+...+... ....+.|+|++|+|||++|+.+++...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 35789999888888777521 124789999999999999999998864
No 262
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.31 E-value=0.067 Score=56.69 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=54.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccC----CCCeEEEEEEccCCCHHHHHHHHHHHcCCCcC---------CCCCH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDK----LFDEVVMVVVSQKPDYKAIQNEIAGALGLFLG---------EHEDV 237 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~~ 237 (780)
...++.|+|++|+|||||+..++-...... .-..++|++....+....+ ..+++.++.... ...+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCCh
Confidence 347999999999999999998764432211 2345889887776665554 336666654321 11112
Q ss_pred H---HHHHHHHHHhc-cCcEEEEEeCCCC
Q 037947 238 S---ERAHLLRQRLK-ASRVLVILDDVWN 262 (780)
Q Consensus 238 ~---~~~~~l~~~L~-~kr~LlVlDdv~~ 262 (780)
. +....+...+. .+.-+||+|.+..
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 2 22233334443 3567899998743
No 263
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.28 E-value=0.082 Score=54.33 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=39.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
...++.|.|.+|+||||||..++.....+. ..++|++.. .+..++...+...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 456899999999999999999998776543 567777655 4566666666554
No 264
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.25 E-value=0.056 Score=54.90 Aligned_cols=87 Identities=21% Similarity=0.214 Sum_probs=51.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC-CCHHHHHHHHHHHcCCCcC---CCCCHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK-PDYKAIQNEIAGALGLFLG---EHEDVSERAHLLRQR 247 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 247 (780)
..+++++|.+|+||||++..++...... -..+.++..... +...+.+....+..+.... ...+..+......+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~--g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKK--GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHT--TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999887654 223555554422 2233334444555444321 122345554445555
Q ss_pred hccCcE-EEEEeCC
Q 037947 248 LKASRV-LVILDDV 260 (780)
Q Consensus 248 L~~kr~-LlVlDdv 260 (780)
++.+.| ++++|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 543344 7888864
No 265
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.18 E-value=0.12 Score=55.28 Aligned_cols=89 Identities=18% Similarity=0.147 Sum_probs=49.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc-CCCHHHHHHHHHHHcCCCcCC---CCCHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-KPDYKAIQNEIAGALGLFLGE---HEDVSERAHLLRQ 246 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 246 (780)
...+|.++|++|+||||++..++.....++ ..+..+.... .+...+-+....+..+..... ..+..........
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G--~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~ 173 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG--YKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVD 173 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHH
Confidence 367999999999999999999998876542 2344444332 122333344444544443221 1223333333333
Q ss_pred Hhc-cCcEEEEEeCCC
Q 037947 247 RLK-ASRVLVILDDVW 261 (780)
Q Consensus 247 ~L~-~kr~LlVlDdv~ 261 (780)
.+. ...=++++|-..
T Consensus 174 ~a~~~~~DvvIIDTaG 189 (433)
T 3kl4_A 174 IFVKNKMDIIIVDTAG 189 (433)
T ss_dssp HTTTTTCSEEEEEECC
T ss_pred HHHhcCCCEEEEECCC
Confidence 333 233366788654
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.15 E-value=0.012 Score=54.84 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=22.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.+|.|.|++|+||||+|+.+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 579999999999999999998875
No 267
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.15 E-value=0.013 Score=54.29 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
.+|.|.|++|+||||+|+.+.....
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988753
No 268
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.13 E-value=0.012 Score=61.65 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=36.3
Q ss_pred CccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 149 GYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
....++|.+..++.+...+......-|.|+|++|+|||++|+.+++...
T Consensus 22 ~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 22 PFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 4566889988666554444333334489999999999999999998754
No 269
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.07 E-value=0.12 Score=50.80 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=33.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNE 222 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 222 (780)
...++.|.|++|+||||||..++...... -..++|++... +..++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~--~~~~~~~~ 69 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE--HPVQVRQN 69 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS--CHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC--CHHHHHHH
Confidence 34689999999999999999887765433 24577776554 34444433
No 270
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.06 E-value=0.015 Score=55.45 Aligned_cols=26 Identities=42% Similarity=0.475 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..++|.|+|++|+||||+|+.+....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999876
No 271
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.04 E-value=0.073 Score=51.68 Aligned_cols=57 Identities=25% Similarity=0.239 Sum_probs=36.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhcc---C-CCCeEEEEEEccCCCHHHHHHHHHHHcC
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMED---K-LFDEVVMVVVSQKPDYKAIQNEIAGALG 228 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~~~~~i~~~l~ 228 (780)
...+++|+|++|+|||||++.++...... . .-...+|+.......... ...+.+..+
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~ 84 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRG 84 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcC
Confidence 34699999999999999999998754321 1 134577877655444333 334444443
No 272
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.02 E-value=0.014 Score=56.48 Aligned_cols=112 Identities=13% Similarity=0.023 Sum_probs=62.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCC--CCCHHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGE--HEDVSERAHLLRQR 247 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~l~~~ 247 (780)
.+..++.|+|..|+||||++..+..+..... ..++.+...... . -...++..++..... .....+....+.+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g--~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~ 84 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYAD--VKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEVESAPEILNYIMSN 84 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEESSTHHHHHHHHST
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEEeccCc--h-HHHHHHHhcCCCccccccCCHHHHHHHHHHH
Confidence 3457899999999999999999998876552 234444433321 1 122344444433221 11233444444444
Q ss_pred hccCcE-EEEEeCCCCcc--ccccccCCcccccccccCCCCCcEEEEEecch
Q 037947 248 LKASRV-LVILDDVWNRL--DLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRK 296 (780)
Q Consensus 248 L~~kr~-LlVlDdv~~~~--~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~ 296 (780)
+.+.++ +||+|.+.... .++.+. .+.+ .|..||+|-+..
T Consensus 85 ~~~~~~dvViIDEaQ~l~~~~ve~l~--------~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 85 SFNDETKVIGIDEVQFFDDRICEVAN--------ILAE--NGFVVIISGLDK 126 (223)
T ss_dssp TSCTTCCEEEECSGGGSCTHHHHHHH--------HHHH--TTCEEEEECCSB
T ss_pred hhCCCCCEEEEecCccCcHHHHHHHH--------HHHh--CCCeEEEEeccc
Confidence 444445 99999985431 112221 1122 367888888754
No 273
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.96 E-value=0.06 Score=54.83 Aligned_cols=88 Identities=19% Similarity=0.188 Sum_probs=49.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH--HHHHHHHHHHcCCCcCC---CCCHHHH-HHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY--KAIQNEIAGALGLFLGE---HEDVSER-AHLL 244 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~~~~i~~~l~~~~~~---~~~~~~~-~~~l 244 (780)
...+|.|+|++|+||||++..++...... -..+.++... .+.. .+-+...++..+..... ..+.... ...+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~--g~kV~lv~~D-~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDE--GKSVVLAAAD-TFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT--TCCEEEEEEC-TTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhc--CCEEEEEccc-cccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 35799999999999999999999887654 1234454433 2222 12233444444432211 1122222 2344
Q ss_pred HHHhccCcEEEEEeCCC
Q 037947 245 RQRLKASRVLVILDDVW 261 (780)
Q Consensus 245 ~~~L~~kr~LlVlDdv~ 261 (780)
...+....-++|+|-..
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 44455555588889653
No 274
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.94 E-value=0.016 Score=54.14 Aligned_cols=25 Identities=16% Similarity=0.365 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.++++|+|++|+|||||++.+....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998864
No 275
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.89 E-value=0.018 Score=54.86 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=25.8
Q ss_pred cCCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 169 DDNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 169 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
.....+|+|+|++|+||||+++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999998875
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.86 E-value=0.014 Score=54.18 Aligned_cols=20 Identities=40% Similarity=0.596 Sum_probs=18.9
Q ss_pred cEEEEEcCCCChHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQV 192 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v 192 (780)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 277
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.80 E-value=0.079 Score=55.27 Aligned_cols=92 Identities=21% Similarity=0.176 Sum_probs=54.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCC----CeEEEEEEccCCCHHHHHHHHHHHcCCCcC---------CCCC-
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLF----DEVVMVVVSQKPDYKAIQNEIAGALGLFLG---------EHED- 236 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~---------~~~~- 236 (780)
...++.|+|++|+|||||+..++......... ..++|++....+....+ ..+++..+.... ...+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45799999999999999999998875321111 24588887665544433 335554432210 0001
Q ss_pred --HHHHHHHHHHHhc------cCcEEEEEeCCCCc
Q 037947 237 --VSERAHLLRQRLK------ASRVLVILDDVWNR 263 (780)
Q Consensus 237 --~~~~~~~l~~~L~------~kr~LlVlDdv~~~ 263 (780)
..+....+...+. .+.-+||+|.+-..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 1223344444454 36779999988554
No 278
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.80 E-value=0.022 Score=52.24 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=25.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
..++++|+|+.|+|||||+..+......+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 46799999999999999999999887644
No 279
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.78 E-value=0.019 Score=54.66 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999998765
No 280
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.78 E-value=0.016 Score=54.72 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
...+++|+|++|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3568999999999999999999764
No 281
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.72 E-value=0.019 Score=53.86 Aligned_cols=25 Identities=32% Similarity=0.476 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.+.|.|+|++|+||||+|+.+....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998876
No 282
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=94.72 E-value=0.2 Score=53.47 Aligned_cols=100 Identities=18% Similarity=0.278 Sum_probs=62.8
Q ss_pred HHHHHHc-cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCC-CHHHHHHHHHHHcCCC------c--
Q 037947 162 DIMEALK-DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKP-DYKAIQNEIAGALGLF------L-- 231 (780)
Q Consensus 162 ~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~------~-- 231 (780)
+.++.|. =.+...++|+|.+|+|||+|+..+.+..... +-+.++++-+++.. .+.++.+++.+.-... .
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtv 220 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKA-HGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVA 220 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTT-CSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhh-CCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEE
Confidence 4555554 2345678999999999999999999875432 34667888888765 4667777776542221 0
Q ss_pred ----CCCCCHHH------HHHHHHHHh---ccCcEEEEEeCCCC
Q 037947 232 ----GEHEDVSE------RAHLLRQRL---KASRVLVILDDVWN 262 (780)
Q Consensus 232 ----~~~~~~~~------~~~~l~~~L---~~kr~LlVlDdv~~ 262 (780)
..+..... ..-.+.+++ +++..|+++||+..
T Consensus 221 vV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 221 LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 00111111 122344444 36999999999843
No 283
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=94.71 E-value=0.032 Score=56.52 Aligned_cols=55 Identities=16% Similarity=0.006 Sum_probs=34.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhccC-CCCeEEEEEEccCCCHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMEDK-LFDEVVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~~~~i~ 224 (780)
.+..+|+|+|+.|+||||||+.+........ ....+..|+...-.-.......+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~ 84 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLN 84 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHh
Confidence 4567999999999999999999988765421 122344435444333334444443
No 284
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.71 E-value=0.068 Score=52.70 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
...+++|+|+.|+|||||++.+...
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999843
No 285
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.71 E-value=0.06 Score=57.69 Aligned_cols=89 Identities=17% Similarity=0.295 Sum_probs=53.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCC-CHHHHHHHHHHHcC--------CCcCCCCCHHH---
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKP-DYKAIQNEIAGALG--------LFLGEHEDVSE--- 239 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~--------~~~~~~~~~~~--- 239 (780)
...++|+|.+|+|||||++.+......+. -+.++++-+++.. ...++..++...-. ....+..-...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~ 229 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVA 229 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHH
Confidence 34689999999999999999988765442 2445677777654 34555555543200 01111110111
Q ss_pred -HHHHHHHHh---ccCcEEEEEeCCC
Q 037947 240 -RAHLLRQRL---KASRVLVILDDVW 261 (780)
Q Consensus 240 -~~~~l~~~L---~~kr~LlVlDdv~ 261 (780)
..-.+.+++ ++++.|+++||+.
T Consensus 230 ~~~ltiAEyFrd~~G~~VLl~~D~it 255 (473)
T 1sky_E 230 LTGLTMAEYFRDEQGQDGLLFIDNIF 255 (473)
T ss_dssp HHHHHHHHHHHHHSCCEEEEEEECTH
T ss_pred HHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 111334443 4789999999983
No 286
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.69 E-value=0.16 Score=54.04 Aligned_cols=87 Identities=15% Similarity=0.189 Sum_probs=48.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHH--HHHHHHHHHcCCCcC---CCCCHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYK--AIQNEIAGALGLFLG---EHEDVSERAHLLR 245 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~---~~~~~~~~~~~l~ 245 (780)
...+|.|+|++|+||||++..++....... ..+..+.. +.+... +.+....+..+.... ...+..+......
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g--~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l 173 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAA-DTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEEC-CSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEeec-cccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHH
Confidence 346899999999999999999998876542 23444443 333322 223344444443221 1123444434444
Q ss_pred HHhccCcE-EEEEeCC
Q 037947 246 QRLKASRV-LVILDDV 260 (780)
Q Consensus 246 ~~L~~kr~-LlVlDdv 260 (780)
+.++.+.| ++|+|-.
T Consensus 174 ~~~~~~~~DvVIIDTa 189 (425)
T 2ffh_A 174 EKARLEARDLILVDTA 189 (425)
T ss_dssp HHHHHTTCSEEEEECC
T ss_pred HHHHHCCCCEEEEcCC
Confidence 44433344 6777754
No 287
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=94.69 E-value=0.024 Score=58.88 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=36.9
Q ss_pred cccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 151 EQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..++|+++.++.+...+..+ .-+.++|++|+|||+||+.+.+..
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred cceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh
Confidence 35789999998888887654 358899999999999999998865
No 288
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.67 E-value=0.029 Score=54.48 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=30.2
Q ss_pred HHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 160 FQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 160 ~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
.+.+...+.......|+|+|.+|+|||||+..+......
T Consensus 26 a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 26 ADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 444444444566789999999999999999999987643
No 289
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.64 E-value=0.022 Score=58.41 Aligned_cols=41 Identities=22% Similarity=0.384 Sum_probs=32.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ 212 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 212 (780)
++.+||+|.|-|||||||.|..+..-....+ ..+.-|.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G--kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 4679999999999999999999988876653 2466666653
No 290
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.60 E-value=0.019 Score=53.54 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVAR 194 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~ 194 (780)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 291
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.59 E-value=0.017 Score=53.45 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.+|+|+|+.|+||||+++.+....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998865
No 292
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.58 E-value=0.022 Score=54.70 Aligned_cols=28 Identities=29% Similarity=0.299 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
....+|+|+|+.|+|||||++.+.....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3467899999999999999999987653
No 293
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.47 E-value=0.019 Score=54.77 Aligned_cols=25 Identities=24% Similarity=0.450 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..+|+|.|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 294
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.46 E-value=0.024 Score=53.48 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998876
No 295
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.46 E-value=0.12 Score=52.92 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=23.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
...+|+|.|+.|+||||+|+.+.....
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345999999999999999999987664
No 296
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.45 E-value=0.022 Score=53.74 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=23.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
.+|.|.|++|+||||+|+.+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998753
No 297
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.43 E-value=0.029 Score=54.26 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 157 MPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 157 ~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
.+..+.+...+...+.++|+|+|.+|+|||||+..+.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33444555555456778999999999999999999988764
No 298
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.43 E-value=0.025 Score=54.04 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998764
No 299
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.41 E-value=0.025 Score=53.29 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
.+|.|.|++|+||||+|+.+......
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999987653
No 300
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.41 E-value=0.044 Score=56.45 Aligned_cols=44 Identities=20% Similarity=0.356 Sum_probs=32.2
Q ss_pred CchHHHHHHHHHHc----cCCccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 155 SRMPTFQDIMEALK----DDNINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 155 gr~~~~~~l~~~L~----~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
+-+...+++++.+. .+....|.|+|++|+||||+++.++.....
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 33455566666553 445567999999999999999999887643
No 301
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.41 E-value=0.17 Score=51.26 Aligned_cols=88 Identities=16% Similarity=0.208 Sum_probs=48.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC-HHHHHHHHHHHcCCCcC---CCCCHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD-YKAIQNEIAGALGLFLG---EHEDVSERAHLLRQ 246 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i~~~l~~~~~---~~~~~~~~~~~l~~ 246 (780)
...+++|+|.+|+||||++..++....... ..+.++....... ....+....+..+...- ...+..+..+....
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~ 174 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEE 174 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999998876542 2344444332211 11122334444443221 12234444333333
Q ss_pred Hh-ccCcEEEEEeCC
Q 037947 247 RL-KASRVLVILDDV 260 (780)
Q Consensus 247 ~L-~~kr~LlVlDdv 260 (780)
.+ ....=++|+|--
T Consensus 175 ~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 175 KARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHTCCEEEEECC
T ss_pred HHHhCCCCEEEEeCC
Confidence 33 344457888965
No 302
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.39 E-value=0.021 Score=53.50 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+.|.|+|++|+|||||++.+....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999998764
No 303
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.39 E-value=0.023 Score=53.05 Aligned_cols=25 Identities=44% Similarity=0.543 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.++|.|.|++|+||||+|+.+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999998875
No 304
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.37 E-value=0.016 Score=60.62 Aligned_cols=111 Identities=10% Similarity=0.109 Sum_probs=62.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHH--HHHHHHHHHcCCCcCCCCCHHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYK--AIQNEIAGALGLFLGEHEDVSERAHLLRQR 247 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 247 (780)
....+++|+|+.|+||||+.+.+....... ....+ +++.+..... .. ..+..+. ....+.......+...
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i-~t~ed~~e~~~~~~-~~~v~q~----~~~~~~~~~~~~La~a 192 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHI-LTIEDPIEFVHESK-KCLVNQR----EVHRDTLGFSEALRSA 192 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEE-EEEESSCCSCCCCS-SSEEEEE----EBTTTBSCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEE-EEccCcHHhhhhcc-ccceeee----eeccccCCHHHHHHHH
Confidence 344599999999999999999998765432 11222 2333221110 00 0000000 0000112234478888
Q ss_pred hccCcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhH
Q 037947 248 LKASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDL 298 (780)
Q Consensus 248 L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v 298 (780)
|...+=+|++|++.+.+.++.+.. ....|..|++||.....
T Consensus 193 L~~~PdvillDEp~d~e~~~~~~~----------~~~~G~~vl~t~H~~~~ 233 (356)
T 3jvv_A 193 LREDPDIILVGEMRDLETIRLALT----------AAETGHLVFGTLHTTSA 233 (356)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHH----------HHHTTCEEEEEESCSSH
T ss_pred hhhCcCEEecCCCCCHHHHHHHHH----------HHhcCCEEEEEEccChH
Confidence 888999999999987655444321 12335568888877654
No 305
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.35 E-value=0.022 Score=54.46 Aligned_cols=26 Identities=38% Similarity=0.560 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..++|.|+|++|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 35689999999999999999998865
No 306
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.33 E-value=0.039 Score=55.84 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 307
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.33 E-value=0.03 Score=51.93 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998764
No 308
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.27 E-value=0.044 Score=57.71 Aligned_cols=45 Identities=22% Similarity=0.163 Sum_probs=36.1
Q ss_pred ccCCchHHHHHHHHHHc-------------c--CCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 152 QFESRMPTFQDIMEALK-------------D--DNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~-------------~--~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.++|.+..++.+...+. . .....|.++|++|+|||++|+.+++..
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 36788888888887772 1 134568999999999999999999876
No 309
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.25 E-value=0.03 Score=52.86 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
..++|+|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457899999999999999999987643
No 310
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.19 E-value=0.032 Score=52.36 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
...+|.|.|++|+||||+++.+.......
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 45789999999999999999999887643
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.18 E-value=0.028 Score=55.82 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
++|.|.|+.|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988753
No 312
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.17 E-value=0.032 Score=52.30 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
+...|.|+|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999876
No 313
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.17 E-value=0.032 Score=52.77 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+..+|.|.|++|+||||+|+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
No 314
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.17 E-value=0.025 Score=52.47 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
+.|.|.|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999988763
No 315
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.16 E-value=0.023 Score=53.40 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998764
No 316
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.15 E-value=0.03 Score=53.49 Aligned_cols=26 Identities=31% Similarity=0.333 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...+|+|+|+.|+||||+++.+....
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 34689999999999999999998754
No 317
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.14 E-value=0.03 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.641 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
.|+|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 318
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.09 E-value=0.024 Score=61.95 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=35.9
Q ss_pred ccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 152 QFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 152 ~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.++|++..++.+...+..+ .-|.++|++|+|||+||+.+++..
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGB
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHH
Confidence 4779998888888777654 358899999999999999998765
No 319
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.07 E-value=0.027 Score=53.56 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
.++++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46799999999999999999988653
No 320
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.06 E-value=0.034 Score=51.80 Aligned_cols=25 Identities=52% Similarity=0.626 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
.++|+|+.|+|||||++.++....+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999987753
No 321
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.04 E-value=0.036 Score=53.32 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=24.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
.+.++|.|.|++|+||||.|+.+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3568999999999999999999998763
No 322
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.03 E-value=0.033 Score=52.54 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..+|+|.|++|+||||+|+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 323
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=93.99 E-value=0.036 Score=51.03 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
...+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999988764
No 324
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.97 E-value=0.035 Score=53.31 Aligned_cols=27 Identities=44% Similarity=0.478 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
...+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999988754
No 325
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.96 E-value=0.03 Score=52.69 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=20.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVAR 194 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~ 194 (780)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 326
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.94 E-value=0.034 Score=54.03 Aligned_cols=25 Identities=44% Similarity=0.543 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..+|+|+|+.|+||||+|+.+....
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
No 327
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.92 E-value=0.059 Score=57.02 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...+.++|++|+|||++|+.+++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999876
No 328
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.90 E-value=0.22 Score=51.30 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=38.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
...++.|.|.+|+||||+|..++...... =..++|++. .-+..++...++..
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES--SSCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC--CCCHHHHHHHHHHH
Confidence 34689999999999999999999887653 235666654 45667777766544
No 329
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.89 E-value=1.4 Score=46.67 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=14.9
Q ss_pred CCCCccEEEeccCccccccCchhhcCCCCccEEEec
Q 037947 531 ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLN 566 (780)
Q Consensus 531 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~ 566 (780)
.|.+|+.+.+..+. ..++...|..+..|..+.+.
T Consensus 135 ~c~~L~~i~lp~~~--~~I~~~~F~~c~~L~~i~~~ 168 (394)
T 4gt6_A 135 HCEELDTVTIPEGV--TSVADGMFSYCYSLHTVTLP 168 (394)
T ss_dssp TCTTCCEEECCTTC--CEECTTTTTTCTTCCEEECC
T ss_pred hhccccccccccee--eeecccceeccccccccccc
Confidence 44445554443321 12333444445555555543
No 330
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=93.89 E-value=0.038 Score=52.65 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+..+|+|.|+.|+||||+|+.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998764
No 331
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.88 E-value=0.34 Score=49.80 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=37.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc-CCCHHHHHHHHHHHcCC
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ-KPDYKAIQNEIAGALGL 229 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~~~~i~~~l~~ 229 (780)
.+..+++|+|+.|+||||+++.++....... ..+.++...- .....+-+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~--g~V~l~g~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG--FSVVIAASDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC--CEEEEEeecccccchHHHHHHHHHHcCc
Confidence 4568999999999999999999998776542 1233333221 22344445555566653
No 332
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.86 E-value=0.12 Score=65.17 Aligned_cols=85 Identities=19% Similarity=0.209 Sum_probs=58.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcC-----CCCCHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLG-----EHEDVSERAHLL 244 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l 244 (780)
++.+.|.|+|++|+|||+||.++....... =..++|+++.+.++... ++.++.+.. .....++....+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~ 1497 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEIC 1497 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHH
Confidence 346799999999999999999998876543 34678888888877665 445553221 111234555555
Q ss_pred HHHhc-cCcEEEEEeCCC
Q 037947 245 RQRLK-ASRVLVILDDVW 261 (780)
Q Consensus 245 ~~~L~-~kr~LlVlDdv~ 261 (780)
....+ .+.-+||+|.+.
T Consensus 1498 ~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1498 DALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHHTCCSEEEESCGG
T ss_pred HHHHhcCCCCEEEEcChh
Confidence 55544 467799999984
No 333
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.86 E-value=0.039 Score=54.51 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+..+|+|+|+.|+||||+++.+.+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999776
No 334
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.86 E-value=0.037 Score=51.86 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...|+|.|++|+||||+|+.+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 335
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=93.86 E-value=0.029 Score=52.57 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
++|.|.|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999988753
No 336
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.85 E-value=0.039 Score=52.91 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=24.3
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
..+|.|.|++|+||||+|+.+.+.....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3589999999999999999999887543
No 337
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.85 E-value=0.45 Score=51.87 Aligned_cols=38 Identities=26% Similarity=0.316 Sum_probs=27.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEE
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVV 210 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 210 (780)
+.++|+|+|.+|+||||++..++.....++ ..+..|+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G--~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKG--WKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEec
Confidence 356999999999999999999998876542 23444444
No 338
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.82 E-value=0.044 Score=52.12 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..+|.|.|++|+||||+|+.+....
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 339
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.78 E-value=0.037 Score=52.70 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=23.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
++..+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999874
No 340
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.78 E-value=0.039 Score=52.34 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
..+|+|.|++|+||||+|+.+.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999988753
No 341
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.77 E-value=0.33 Score=50.26 Aligned_cols=52 Identities=15% Similarity=0.224 Sum_probs=36.4
Q ss_pred HHHHHHHcc-CCccEEEEEcCCCChHHHHHHHHHHHHhcc-CCCCeEEEEEEccC
Q 037947 161 QDIMEALKD-DNINVIGIYGIGGVGKTTLVKQVARRVMED-KLFDEVVMVVVSQK 213 (780)
Q Consensus 161 ~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~vs~~ 213 (780)
-+.++.+.. .+...++|+|.+|+|||+|+..+.+..... ..+. ++++-+++.
T Consensus 163 iraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 163 TRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred chhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 456666652 345678999999999999999999876542 1233 356666654
No 342
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.77 E-value=0.034 Score=51.37 Aligned_cols=25 Identities=32% Similarity=0.406 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
++|.|.|+.|+||||+|+.+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988753
No 343
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.73 E-value=0.075 Score=52.30 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.....|+|.|++|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
No 344
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.68 E-value=0.036 Score=52.91 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVAR 194 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~ 194 (780)
.+|+|.|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999987
No 345
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.67 E-value=0.038 Score=52.91 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...+++|+|+.|+|||||++.+..-.
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45789999999999999999998765
No 346
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.66 E-value=0.04 Score=54.63 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
.+..+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999988653
No 347
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.65 E-value=0.046 Score=52.92 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+...|.|.|++|+||||+|+.+....
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999998875
No 348
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.65 E-value=0.033 Score=51.52 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=19.3
Q ss_pred CccEEEEEcCCCChHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQV 192 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v 192 (780)
...+++|+|+.|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3568999999999999999963
No 349
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.64 E-value=0.053 Score=55.26 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=25.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
+..+|+|+|++|+||||+++.++......
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 45799999999999999999999887653
No 350
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.63 E-value=0.042 Score=54.81 Aligned_cols=26 Identities=38% Similarity=0.583 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
..+|.|.|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 351
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.60 E-value=0.08 Score=54.16 Aligned_cols=42 Identities=21% Similarity=0.206 Sum_probs=29.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEc
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVS 211 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 211 (780)
....+|+|+|+.|+|||||++.+..-......-..+.+|.-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 345799999999999999999998876542111235555543
No 352
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.57 E-value=0.04 Score=50.85 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=24.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
++++|+|..|+|||||++.+.......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 689999999999999999999887654
No 353
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.57 E-value=0.036 Score=53.63 Aligned_cols=26 Identities=42% Similarity=0.595 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 35689999999999999999998755
No 354
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.53 E-value=0.032 Score=52.14 Aligned_cols=26 Identities=35% Similarity=0.369 Sum_probs=18.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
..+|.|.|++|+||||+|+.+.....
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987653
No 355
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.51 E-value=0.041 Score=52.69 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
...+|+|+|++|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998764
No 356
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=93.51 E-value=0.33 Score=51.20 Aligned_cols=124 Identities=21% Similarity=0.186 Sum_probs=66.2
Q ss_pred CCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCC-ccccCCCCCCEEEccCccCCC--cccccccCCCcE
Q 037947 531 ECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP-STLGCLINLQTLSFECCVLGD--VATVGALKKLVI 607 (780)
Q Consensus 531 ~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~~ 607 (780)
.+.+++.+.+..+- ..+....|..+..|+.+.+..+ ++.++ ..+..+.+|+.+.+..+ +.. ...+..+.+|+.
T Consensus 215 ~~~~l~~i~~~~~~--~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 215 YGKNLKKITITSGV--TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TCSSCSEEECCTTC--CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred cccccceeeeccce--eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 44555555554332 1234444555666666666443 33332 24445566666666543 222 234556666666
Q ss_pred EEeecCCCCccCh-hhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccC
Q 037947 608 LSFRNSHIEQLPE-EIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGN 660 (780)
Q Consensus 608 L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 660 (780)
+.+.++.++.++. .+..+.+|+.+.+.. .++.+....+.++++|+.+.+..
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 6666666666643 455566666666653 35555555556666666666543
No 357
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.51 E-value=0.045 Score=52.83 Aligned_cols=28 Identities=14% Similarity=0.235 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
+...+++|+|+.|+|||||.+.+.....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3457999999999999999999988653
No 358
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.50 E-value=0.21 Score=53.15 Aligned_cols=79 Identities=19% Similarity=0.256 Sum_probs=36.0
Q ss_pred cCCCCCCEEEccCccCCC-cccccccCCCcEEEeecCCCCccCh-hhcCCCCCCEEecCCCCCCcccCccccCCCcccce
Q 037947 578 GCLINLQTLSFECCVLGD-VATVGALKKLVILSFRNSHIEQLPE-EIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEE 655 (780)
Q Consensus 578 ~~l~~L~~L~L~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~ 655 (780)
..+.+|+.+.+..+...- ...+.++.+|+.+.+. +.+..++. .+..+.+|+.+.+.. .++.+....+..+++|+.
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~ 338 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLER 338 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCE
T ss_pred eecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCE
Confidence 344445555444332111 2233444555555553 23444443 334455555555543 344444444555555555
Q ss_pred eecc
Q 037947 656 LYMG 659 (780)
Q Consensus 656 L~l~ 659 (780)
+.+.
T Consensus 339 i~ip 342 (394)
T 4gt6_A 339 IAIP 342 (394)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5553
No 359
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.49 E-value=0.071 Score=50.19 Aligned_cols=38 Identities=16% Similarity=0.175 Sum_probs=28.4
Q ss_pred HHHHHHHHcc-CCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 160 FQDIMEALKD-DNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 160 ~~~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
+..+..++.+ ++...+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4455555543 2234799999999999999999998764
No 360
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.48 E-value=0.05 Score=52.30 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=26.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCe
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDE 204 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 204 (780)
+..+|+|.|+.|+||||+|+.+.+..... +++.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~-~~~v 40 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAA-GHRA 40 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 34689999999999999999999887543 3443
No 361
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.47 E-value=0.048 Score=52.31 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=26.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCe
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDE 204 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 204 (780)
..+|+|.|+.|+||||+|+.+.+..... +++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~-~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN-NVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT-TCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc-CCcE
Confidence 4689999999999999999999876543 3444
No 362
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.46 E-value=0.061 Score=53.35 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...+|.|.|++|+||||+|+.+....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 35689999999999999999998865
No 363
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.41 E-value=0.05 Score=49.92 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
.|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999988753
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.40 E-value=0.049 Score=51.33 Aligned_cols=25 Identities=36% Similarity=0.523 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
+|+|.|+.|+||||+|+.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987643
No 365
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.39 E-value=0.051 Score=49.38 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=24.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
....+++|+|+.|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 455799999999999999999998876
No 366
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.38 E-value=0.046 Score=51.47 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..+|+|.|++|+||||+|+.+....
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 367
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.38 E-value=0.052 Score=53.81 Aligned_cols=26 Identities=38% Similarity=0.483 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...+|+|+|+.|+||||+++.+....
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 45699999999999999999998765
No 368
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.33 E-value=0.14 Score=44.66 Aligned_cols=54 Identities=19% Similarity=0.335 Sum_probs=39.6
Q ss_pred EEEeecCCCC--ccChhhcCCCCCCEEecCCCCCCcccCccccCCCcccceeeccCCCC
Q 037947 607 ILSFRNSHIE--QLPEEIGQLTRLKLLDLSNCSKLKSIRPNVISNLPRLEELYMGNSFT 663 (780)
Q Consensus 607 ~L~l~~~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~ 663 (780)
.++.+++.++ .+|..+ ..+|++|+|++ |.++.+++..+..+++|++|++.+|..
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCe
Confidence 5666667777 777542 34688888887 778888777777788888888887754
No 369
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.29 E-value=0.13 Score=48.58 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=22.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
.|+|.|+.|+||||+|+.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999988754
No 370
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.25 E-value=0.052 Score=53.58 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
....+|+|.|+.|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998865
No 371
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.22 E-value=0.1 Score=48.19 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=24.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
..++++|+|+.|+|||||+..+......
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 3578999999999999999999987653
No 372
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.20 E-value=0.048 Score=52.82 Aligned_cols=27 Identities=19% Similarity=0.158 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
....|.|.|++|+||||+|+.+.+...
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345799999999999999999998764
No 373
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.19 E-value=0.28 Score=52.72 Aligned_cols=98 Identities=18% Similarity=0.263 Sum_probs=63.0
Q ss_pred HHHHHc-cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCC-CHHHHHHHHHHHcCCC----------
Q 037947 163 IMEALK-DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKP-DYKAIQNEIAGALGLF---------- 230 (780)
Q Consensus 163 l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i~~~l~~~---------- 230 (780)
.++.|. =.+...++|.|.+|+|||+|+..+.+..... +-+.++++-+++.. .+.++.+++.+.-...
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~~-~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTTT-CSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHhh-CCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 445554 2344568999999999999999999875432 35778888888776 4667777776542111
Q ss_pred ----cCCCC-----CHHHHHHHHHHHhc---cCcEEEEEeCCC
Q 037947 231 ----LGEHE-----DVSERAHLLRQRLK---ASRVLVILDDVW 261 (780)
Q Consensus 231 ----~~~~~-----~~~~~~~~l~~~L~---~kr~LlVlDdv~ 261 (780)
..+++ ......-.+.+++. ++..|+++||+.
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~Dsit 276 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIF 276 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 00111 01122334555554 589999999984
No 374
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.17 E-value=0.15 Score=55.57 Aligned_cols=42 Identities=29% Similarity=0.481 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 157 MPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 157 ~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
.+.++.+.+.+.+++ +.+.|.|.+|+||||++..+.......
T Consensus 31 ~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 31 KNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 344455555555433 489999999999999999999887655
No 375
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.15 E-value=0.03 Score=53.82 Aligned_cols=26 Identities=35% Similarity=0.562 Sum_probs=23.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
.+|+|.|+.|+||||+|+.+......
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999988754
No 376
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.13 E-value=0.047 Score=52.14 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVAR 194 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~ 194 (780)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 377
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.13 E-value=0.053 Score=52.75 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...|.|.|++|+||||+|+.+....
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998764
No 378
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.10 E-value=0.12 Score=54.06 Aligned_cols=40 Identities=30% Similarity=0.531 Sum_probs=31.0
Q ss_pred HHHHHHHHc--cCCccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 160 FQDIMEALK--DDNINVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 160 ~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
...+++.+. ..+..+|+|+|.+|+|||||+..+.......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 445555554 4567899999999999999999998876543
No 379
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.04 E-value=0.058 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 380
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.02 E-value=0.23 Score=46.93 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=32.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHH
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAG 225 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 225 (780)
.|+|-|.-|+||||.++.+++....++ . .+++..-.......+..+.++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g-~-~v~~treP~~t~~~~~ir~~l~ 51 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG-K-KVILKREPGGTETGEKIRKILL 51 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-C-CEEEEESSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC-C-cEEEEECCCCCcHHHHHHHHhh
Confidence 478899999999999999999887653 2 2333333333334444555443
No 381
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.99 E-value=0.059 Score=50.79 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.-.+|+|.|+.|+||||+|+.+....
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc
Confidence 45789999999999999999998763
No 382
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.96 E-value=0.077 Score=56.73 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=36.0
Q ss_pred cccCCchHHHHHHHHHHcc--------------CCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 151 EQFESRMPTFQDIMEALKD--------------DNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 151 ~~~~gr~~~~~~l~~~L~~--------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
..++|.++.++.+..++.. ...+-|.++|++|+||||+|+.++....
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3567888887777666531 1245689999999999999999998764
No 383
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.94 E-value=0.069 Score=51.24 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=24.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
....+|.|.|+.|+||||+|+.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4557899999999999999999998765
No 384
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.94 E-value=0.17 Score=58.37 Aligned_cols=93 Identities=14% Similarity=0.210 Sum_probs=55.5
Q ss_pred ccccCCchHHHHHHHHHHcc-------------CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCH
Q 037947 150 YEQFESRMPTFQDIMEALKD-------------DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDY 216 (780)
Q Consensus 150 ~~~~~gr~~~~~~l~~~L~~-------------~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 216 (780)
..++.|-++.+++|.+.+.- ...+-|.++|++|+|||.+|+.+++..... ++.++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~~---- 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIKG---- 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECCH----
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEecc----
Confidence 34566777777777665431 123557899999999999999999876422 233321
Q ss_pred HHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHh-ccCcEEEEEeCCCCc
Q 037947 217 KAIQNEIAGALGLFLGEHEDVSERAHLLRQRL-KASRVLVILDDVWNR 263 (780)
Q Consensus 217 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~L-~~kr~LlVlDdv~~~ 263 (780)
.++ +.. ...+ .+...+.+.+.- +..+.+|+||+++..
T Consensus 545 ~~l----~s~----~vGe--se~~vr~lF~~Ar~~~P~IifiDEiDsl 582 (806)
T 3cf2_A 545 PEL----LTM----WFGE--SEANVREIFDKARQAAPCVLFFDELDSI 582 (806)
T ss_dssp HHH----HTT----TCSS--CHHHHHHHHHHHHTTCSEEEECSCGGGC
T ss_pred chh----hcc----ccch--HHHHHHHHHHHHHHcCCceeechhhhHH
Confidence 121 111 1111 123334444443 347899999998654
No 385
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=92.91 E-value=0.067 Score=50.88 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998765
No 386
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.85 E-value=0.073 Score=49.48 Aligned_cols=28 Identities=21% Similarity=0.303 Sum_probs=24.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
+..+|+|.|+.|+||||+++.+......
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3468999999999999999999887643
No 387
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.85 E-value=0.06 Score=50.59 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
.+++|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998765
No 388
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.83 E-value=0.13 Score=52.66 Aligned_cols=43 Identities=23% Similarity=0.362 Sum_probs=32.4
Q ss_pred cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC
Q 037947 169 DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK 213 (780)
Q Consensus 169 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 213 (780)
....++|+|+|-||+||||+|..++......+ ..++-|.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~ 80 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDPK 80 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESSS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCC
Confidence 45678999999999999999999998876542 24666666543
No 389
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.70 E-value=0.2 Score=43.64 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=6.1
Q ss_pred ccEEEecCCCCCCC
Q 037947 560 LQVLSLNGFHFPSL 573 (780)
Q Consensus 560 Lr~L~l~~~~~~~l 573 (780)
|+.|+|++|.++.+
T Consensus 33 l~~L~Ls~N~l~~l 46 (130)
T 3rfe_A 33 TTELVLTGNNLTAL 46 (130)
T ss_dssp CSEEECTTSCCSSC
T ss_pred CCEEECCCCcCCcc
Confidence 44444444444444
No 390
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.65 E-value=0.077 Score=54.01 Aligned_cols=28 Identities=39% Similarity=0.522 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
...+++|+|+.|+||||+++.++.....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999999987764
No 391
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.63 E-value=0.079 Score=51.48 Aligned_cols=25 Identities=28% Similarity=0.521 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..+|+|.|++|+||||+|+.+....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998876
No 392
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=92.61 E-value=0.069 Score=51.42 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.|+|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 393
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.54 E-value=0.44 Score=51.32 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=35.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 224 (780)
...++.|.|.+|+||||+|..++.+...+ -..++|++... +..++...++
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHH
Confidence 34689999999999999999999887654 23567766543 3444444444
No 394
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.51 E-value=0.068 Score=52.68 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
..+|+|+|+.|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998663
No 395
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.49 E-value=0.073 Score=52.15 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.1
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
+. .+++|+|+.|+|||||.+.++.-
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 45 79999999999999999998754
No 396
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.44 E-value=0.072 Score=51.38 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998876
No 397
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.42 E-value=0.082 Score=50.44 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+|.|.|++|+||+|.|+.+.+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999876
No 398
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.42 E-value=0.44 Score=51.48 Aligned_cols=53 Identities=11% Similarity=-0.012 Sum_probs=38.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
...++.|.|.+|+||||+|..++....... -..++|++.. -+..++...++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHH
Confidence 346899999999999999999998876431 2346776654 4566677666543
No 399
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.41 E-value=0.082 Score=50.42 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
++|+|.|+.|+||||+|+.+.....
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999988653
No 400
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.38 E-value=0.051 Score=53.02 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=16.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHH-HHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVA-RRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~-~~~ 196 (780)
..+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998 653
No 401
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.37 E-value=0.59 Score=50.64 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=36.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIA 224 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~ 224 (780)
...++.|.|.+|+||||||..++....... -..++|++... +...+...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 346899999999999999999998876431 12567766543 4456665553
No 402
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.34 E-value=0.24 Score=50.26 Aligned_cols=53 Identities=21% Similarity=0.252 Sum_probs=35.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAG 225 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 225 (780)
....+++|.|++|+|||||++.++....... -..++|++... +..++...+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC--CHHHHHHHHHH
Confidence 3456899999999999999999998775441 11455665432 34444444433
No 403
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.33 E-value=0.58 Score=61.75 Aligned_cols=90 Identities=18% Similarity=0.164 Sum_probs=53.7
Q ss_pred HHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCCC-CCHHH
Q 037947 161 QDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGEH-EDVSE 239 (780)
Q Consensus 161 ~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~~-~~~~~ 239 (780)
..+++.+...+ +-|.++|+.|+|||++++.+..... .+ ..+.++.|...+...++..+-..+....... .
T Consensus 1294 ~~ll~~ll~~~-~pvLL~GptGtGKT~li~~~L~~l~---~~-~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G---- 1364 (3245)
T 3vkg_A 1294 VDVLHAWLSEH-RPLILCGPPGSGKTMTLTSTLRAFP---DF-EVVSLNFSSATTPELLLKTFDHHCEYKRTPSGE---- 1364 (3245)
T ss_dssp HHHHHHHHHTT-CCCEEESSTTSSHHHHHHHHGGGCT---TE-EEEEECCCTTCCHHHHHHHHHHHEEEEECTTSC----
T ss_pred HHHHHHHHHCC-CcEEEECCCCCCHHHHHHHHHHhCC---CC-ceEEEEeeCCCCHHHHHHHHhhcceEEeccCCC----
Confidence 34455444433 3467999999999998877654321 12 3467888888888888877755442111100 0
Q ss_pred HHHHHHHHh-ccCcEEEEEeCCCC
Q 037947 240 RAHLLRQRL-KASRVLVILDDVWN 262 (780)
Q Consensus 240 ~~~~l~~~L-~~kr~LlVlDdv~~ 262 (780)
.+..-. .||+.++++||+.-
T Consensus 1365 ---~~~~p~~~Gk~~VlFiDDiNm 1385 (3245)
T 3vkg_A 1365 ---TVLRPTQLGKWLVVFCDEINL 1385 (3245)
T ss_dssp ---EEEEESSTTCEEEEEETTTTC
T ss_pred ---cccCCCcCCceEEEEecccCC
Confidence 000001 26788999999843
No 404
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.30 E-value=0.078 Score=51.84 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
...+++|+|+.|+|||||.+.+..-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 4568999999999999999988653
No 405
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.29 E-value=0.086 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVAR 194 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~ 194 (780)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 406
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.27 E-value=0.089 Score=59.50 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=38.5
Q ss_pred CccccCCchHHHHHHHHHHccCCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 149 GYEQFESRMPTFQDIMEALKDDNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 149 ~~~~~~gr~~~~~~l~~~L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++....
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 3457889988888877777654 5789999999999999999998654
No 407
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.23 E-value=0.1 Score=50.98 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
...|.|.|+.|+||||+|+.+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998763
No 408
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.16 E-value=0.22 Score=48.45 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=28.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEE
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMV 208 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 208 (780)
...|.|.|+.|+||||+++.+.+..... .+..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~-~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQN-GIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHHT-TCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc-CCCeeeee
Confidence 4689999999999999999999988654 35534333
No 409
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.14 E-value=0.082 Score=54.32 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.+|+|.|+.|+||||||..++...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHc
Confidence 589999999999999999998865
No 410
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.12 E-value=0.084 Score=54.05 Aligned_cols=28 Identities=25% Similarity=0.247 Sum_probs=24.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
....+|+|+|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457999999999999999999988654
No 411
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.11 E-value=0.55 Score=51.67 Aligned_cols=53 Identities=17% Similarity=0.156 Sum_probs=38.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGA 226 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~ 226 (780)
...++.|.|.+|+||||||..++.....+. =..++|++... +..++...++..
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHHH
Confidence 346899999999999999999998876431 23567776644 466777666543
No 412
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.08 E-value=0.11 Score=51.76 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=24.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
+..++.+.|.||+||||++..+.....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999998776
No 413
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.06 E-value=0.094 Score=50.82 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.|.|.|++|+||||+|+.+....
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998875
No 414
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.06 E-value=0.084 Score=53.24 Aligned_cols=24 Identities=29% Similarity=0.715 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVAR 194 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~ 194 (780)
...+|+|.|+.|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999983
No 415
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.05 E-value=0.38 Score=60.69 Aligned_cols=86 Identities=19% Similarity=0.200 Sum_probs=59.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcC-----CCCCHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLG-----EHEDVSERAHLLR 245 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 245 (780)
...++.|+|++|+||||||.+++...... -..++|++.....+... ++.++.+.. ...+.++....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 45799999999999999999999887644 24688988888776542 555665322 2234556555555
Q ss_pred HHhc-cCcEEEEEeCCCCc
Q 037947 246 QRLK-ASRVLVILDDVWNR 263 (780)
Q Consensus 246 ~~L~-~kr~LlVlDdv~~~ 263 (780)
...+ .+.-+||+|.+...
T Consensus 455 ~lv~~~~~~lIVIDSL~al 473 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAAL 473 (2050)
T ss_dssp HHHHHTCCSEEEESCGGGC
T ss_pred HHHHhcCCcEEEECCHHHh
Confidence 5443 35669999998544
No 416
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=92.03 E-value=0.21 Score=51.89 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=36.0
Q ss_pred ccCCccEEEEEcCCCChHHHHHHHHHHHHh--ccCCCCeEEEEEEccCCCHHH
Q 037947 168 KDDNINVIGIYGIGGVGKTTLVKQVARRVM--EDKLFDEVVMVVVSQKPDYKA 218 (780)
Q Consensus 168 ~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~~~~~~ 218 (780)
.....+++.+.|.||+||||+|..++.... .. =..++-|+.....++..
T Consensus 14 ~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D~~~~l~~ 64 (348)
T 3io3_A 14 QHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTDPAHNLSD 64 (348)
T ss_dssp TCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSCHHHH
T ss_pred cCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCCChHH
Confidence 355678999999999999999999998876 43 33466666665544433
No 417
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=91.97 E-value=0.1 Score=54.29 Aligned_cols=28 Identities=39% Similarity=0.522 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
...+++|+|+.|+||||+++.++.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3469999999999999999999988764
No 418
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.93 E-value=0.081 Score=51.77 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...+++|+|+.|+|||||++.+..-.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999997654
No 419
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.92 E-value=0.061 Score=54.50 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=20.7
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
+..+|+|.|+.|+||||+|+.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 420
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.91 E-value=0.27 Score=47.01 Aligned_cols=53 Identities=19% Similarity=0.161 Sum_probs=35.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAG 225 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~ 225 (780)
...|.+.|+.|+||||+++.+.+...... +..+.+..-.....+.+.+++++.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~-~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLG-IRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC-CCcceeeeCCCCCHHHHHHHHHHh
Confidence 36899999999999999999999887653 433333322222234455555554
No 421
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.90 E-value=0.11 Score=53.17 Aligned_cols=29 Identities=31% Similarity=0.481 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
...+|+|+|++|+||||++..++......
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~ 132 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAEL 132 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 45799999999999999999999887653
No 422
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.90 E-value=0.094 Score=50.39 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=21.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.|.|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998866
No 423
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.88 E-value=0.076 Score=51.48 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
...+++|+|+.|+|||||.+.++.-
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999998653
No 424
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.86 E-value=0.18 Score=49.06 Aligned_cols=28 Identities=32% Similarity=0.467 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
....|+|.|+.|+||||+++.+......
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4568999999999999999999998764
No 425
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.86 E-value=0.084 Score=52.55 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
...+++|+|+.|+|||||.+.+..-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999998654
No 426
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.78 E-value=0.22 Score=51.35 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=36.7
Q ss_pred HccCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHH
Q 037947 167 LKDDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKA 218 (780)
Q Consensus 167 L~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 218 (780)
+.+...+++.+.|.||+||||+|..++...... -..++-|+.....++..
T Consensus 11 l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~--g~~vllid~D~~~~l~~ 60 (334)
T 3iqw_A 11 LDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKV--RRSVLLLSTDPAHNLSD 60 (334)
T ss_dssp HHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTS--SSCEEEEECCSSCHHHH
T ss_pred hcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhC--CCcEEEEECCCCCChhH
Confidence 334557888999999999999999999887654 23566777665544443
No 427
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.76 E-value=0.073 Score=50.89 Aligned_cols=24 Identities=29% Similarity=0.243 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
..+++|+|+.|+|||||++.+..-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999876
No 428
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=91.76 E-value=0.098 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
++|.|+|+.|+||||||+.++...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 589999999999999999998864
No 429
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.66 E-value=0.11 Score=51.94 Aligned_cols=26 Identities=38% Similarity=0.459 Sum_probs=22.6
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
....+++|+|+.|+|||||++.++.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34578999999999999999999764
No 430
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.64 E-value=0.092 Score=52.21 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
....+++|+|+.|+|||||++.++--
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 34578999999999999999998654
No 431
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.64 E-value=0.11 Score=52.66 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=24.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+...+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456799999999999999999998876
No 432
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.62 E-value=0.11 Score=48.89 Aligned_cols=80 Identities=11% Similarity=0.150 Sum_probs=38.8
Q ss_pred CCCCccEEEecCC-CCCC-----CCccccCCCCCCEEEccCccCCCc------ccccccCCCcEEEeecCCCCc-----c
Q 037947 556 GVPSLQVLSLNGF-HFPS-----LPSTLGCLINLQTLSFECCVLGDV------ATVGALKKLVILSFRNSHIEQ-----L 618 (780)
Q Consensus 556 ~l~~Lr~L~l~~~-~~~~-----lp~~i~~l~~L~~L~L~~~~~~~~------~~i~~l~~L~~L~l~~~~l~~-----l 618 (780)
.-+.|+.|+|+++ .+.. +-..+..-..|+.|+|++|.+.+. ..+..-..|++|+|++|.|.. |
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455556666553 4431 222333445566666666665441 122333456666666665542 2
Q ss_pred ChhhcCCCCCCEEecCC
Q 037947 619 PEEIGQLTRLKLLDLSN 635 (780)
Q Consensus 619 p~~i~~l~~L~~L~l~~ 635 (780)
-..+..-+.|++|++++
T Consensus 119 a~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCceeEEECCC
Confidence 33334444566666654
No 433
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.61 E-value=0.14 Score=48.08 Aligned_cols=103 Identities=15% Similarity=0.099 Sum_probs=64.9
Q ss_pred CCCccEEEeccC-ccccc----cCchhhcCCCCccEEEecCCCCC-----CCCccccCCCCCCEEEccCccCCC--c---
Q 037947 532 CPKLKLFFLFSK-KLSLV----IPDLFFEGVPSLQVLSLNGFHFP-----SLPSTLGCLINLQTLSFECCVLGD--V--- 596 (780)
Q Consensus 532 ~~~L~~L~l~~~-~~~~~----~~~~~~~~l~~Lr~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~~~~--~--- 596 (780)
-+.|+.|+++++ .+... +.. .+..-+.|+.|+|++|.+. .+-..+..-..|+.|+|++|.++. .
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~-aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIE-AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHH-HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHH-HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 346777777764 44321 111 2345578899999988876 233445556789999999998876 1
Q ss_pred -ccccccCCCcEEEeecCC---CC-----ccChhhcCCCCCCEEecCC
Q 037947 597 -ATVGALKKLVILSFRNSH---IE-----QLPEEIGQLTRLKLLDLSN 635 (780)
Q Consensus 597 -~~i~~l~~L~~L~l~~~~---l~-----~lp~~i~~l~~L~~L~l~~ 635 (780)
..+..-..|+.|+|+++. +. .+-..+..-+.|..|+++.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence 344555679999998653 33 2333444556677777754
No 434
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.60 E-value=0.18 Score=50.09 Aligned_cols=110 Identities=13% Similarity=0.172 Sum_probs=57.2
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC-CCHHHHHHHHHH--HcCCCcCCCCCHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK-PDYKAIQNEIAG--ALGLFLGEHEDVSERAHLLRQ 246 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~~~~i~~--~l~~~~~~~~~~~~~~~~l~~ 246 (780)
....+++|+|+.|+|||||++.+....... +.+.+++.-... +-.... ..+.. .++.. .......+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~~~~~-~~~v~q~~~gl~------~~~l~~~la~ 93 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHK-KSIVNQREVGED------TKSFADALRA 93 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCS-SSEEEEEEBTTT------BSCHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceeecCCc-ceeeeHHHhCCC------HHHHHHHHHH
Confidence 455799999999999999999998865432 233333221110 000000 00000 00100 0122345666
Q ss_pred HhccCcEEEEEeCCCCccccccccCCcccccccccCCCCCcEEEEEecchhH
Q 037947 247 RLKASRVLVILDDVWNRLDLDAVGIPYKNYQNEIKDDRRRCAMLLTSRRKDL 298 (780)
Q Consensus 247 ~L~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~l~~~~~~s~iivTtr~~~v 298 (780)
.|..++=+|++|+..+.+....+ + .....|..|++||....+
T Consensus 94 aL~~~p~illlDEp~D~~~~~~~---l-------~~~~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 94 ALREDPDVIFVGEMRDLETVETA---L-------RAAETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHCCSEEEESCCCSHHHHHHH---H-------HHHHTTCEEEEEECCSSH
T ss_pred HHhhCCCEEEeCCCCCHHHHHHH---H-------HHHccCCEEEEEeCcchH
Confidence 66667778999998644332221 1 112235567888776553
No 435
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=91.59 E-value=0.11 Score=52.50 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.++|.|+|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3689999999999999999998753
No 436
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.49 E-value=0.44 Score=59.30 Aligned_cols=86 Identities=19% Similarity=0.205 Sum_probs=59.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcC-----CCCCHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLG-----EHEDVSERAHLLR 245 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 245 (780)
..+++.|.|++|+||||||.+++...... -..++|++.....+.. .++.++.+.. ...+.++....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~~~--G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 45799999999999999999998877644 3468899888877653 2556665432 1223555555555
Q ss_pred HHhc-cCcEEEEEeCCCCc
Q 037947 246 QRLK-ASRVLVILDDVWNR 263 (780)
Q Consensus 246 ~~L~-~kr~LlVlDdv~~~ 263 (780)
...+ .+.-+||+|.+...
T Consensus 455 ~lv~~~~~~lVVIDSL~al 473 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAAL 473 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHhcCCCEEEECCHHHh
Confidence 5443 35669999998654
No 437
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.41 E-value=0.19 Score=53.35 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=58.5
Q ss_pred HHHHHHcc-CCccEEEEEcCCCChHHHHHHHHHHHHhcc-CCCC-eEEEEEEccCC-CHHHHHHHHHHH--cCC-----C
Q 037947 162 DIMEALKD-DNINVIGIYGIGGVGKTTLVKQVARRVMED-KLFD-EVVMVVVSQKP-DYKAIQNEIAGA--LGL-----F 230 (780)
Q Consensus 162 ~l~~~L~~-~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~-~~~wv~vs~~~-~~~~~~~~i~~~--l~~-----~ 230 (780)
+.++.|.. .+...++|.|.+|+|||+|+.++.+..... ++-+ .++++-+++.. .+.++.+++.+. +.. .
T Consensus 140 raID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~a 219 (465)
T 3vr4_D 140 SAIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMN 219 (465)
T ss_dssp HHHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEE
T ss_pred eEEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEE
Confidence 34444441 223457899999999999999998876542 1111 56777777654 466666665543 110 1
Q ss_pred cCCCCCHHH------HHHHHHHHhc---cCcEEEEEeCCC
Q 037947 231 LGEHEDVSE------RAHLLRQRLK---ASRVLVILDDVW 261 (780)
Q Consensus 231 ~~~~~~~~~------~~~~l~~~L~---~kr~LlVlDdv~ 261 (780)
..+++ ... ..-.+.+++. ++..|+++||+.
T Consensus 220 tsd~p-~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslT 258 (465)
T 3vr4_D 220 LANDP-AIERIATPRMALTAAEYLAYEKGMHVLVIMTDMT 258 (465)
T ss_dssp ETTSC-HHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHH
T ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChH
Confidence 11111 211 1234555554 689999999984
No 438
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.40 E-value=0.11 Score=52.09 Aligned_cols=25 Identities=36% Similarity=0.441 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
...+++|+|+.|+|||||++.+.--
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 4578999999999999999998653
No 439
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=91.40 E-value=0.24 Score=47.62 Aligned_cols=30 Identities=33% Similarity=0.350 Sum_probs=25.8
Q ss_pred cCCccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 169 DDNINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 169 ~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
..+...|.|.|+.|+||||+++.+.+....
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345678999999999999999999998765
No 440
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.40 E-value=0.13 Score=51.75 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..++|.|+|+.|+||||||..++...
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 34689999999999999999998764
No 441
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=91.39 E-value=0.14 Score=55.27 Aligned_cols=42 Identities=31% Similarity=0.429 Sum_probs=30.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD 215 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 215 (780)
...+++|+|..|+|||||++.++...... .+.+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 35699999999999999999999877543 2344444344443
No 442
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.38 E-value=0.11 Score=51.24 Aligned_cols=25 Identities=36% Similarity=0.419 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
...+++|+|+.|+|||||++.++.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999763
No 443
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.37 E-value=0.1 Score=51.65 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
...+++|+|+.|+|||||.+.++--
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998654
No 444
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.35 E-value=0.1 Score=51.36 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
...+++|+|+.|.|||||.+.++.-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998654
No 445
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.26 E-value=0.1 Score=51.79 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
...+++|+|+.|+|||||++.+..-
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 4568999999999999999999754
No 446
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.22 E-value=0.1 Score=50.70 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...+++|+|+.|.|||||.+.++.-.
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999997654
No 447
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.21 E-value=0.1 Score=51.17 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
...+++|+|+.|+|||||.+.++--
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999998754
No 448
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.20 E-value=0.1 Score=52.01 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...+++|+|+.|.|||||++.+..-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45789999999999999999987543
No 449
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.20 E-value=0.089 Score=50.50 Aligned_cols=25 Identities=40% Similarity=0.612 Sum_probs=21.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
...+++|+|+.|+|||||.+.++.-
T Consensus 34 ~Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999998654
No 450
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.20 E-value=0.12 Score=48.69 Aligned_cols=25 Identities=28% Similarity=0.482 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.-.|+|+|..|+|||||++.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3578999999999999999998754
No 451
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.19 E-value=0.11 Score=52.07 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
....+++|+|+.|+|||||++.++.-.
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345789999999999999999987543
No 452
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.15 E-value=0.46 Score=59.19 Aligned_cols=86 Identities=19% Similarity=0.199 Sum_probs=63.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHHHHHHHHHcCCCcCC-----CCCHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAIQNEIAGALGLFLGE-----HEDVSERAHLLR 245 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 245 (780)
+.++|-|+|+.|+||||||.++....... =..++|+.+.+..+..- ++.++.+... ++..++....+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 45899999999999999999999776544 46789999988877653 7778776542 233456666666
Q ss_pred HHhcc-CcEEEEEeCCCCc
Q 037947 246 QRLKA-SRVLVILDDVWNR 263 (780)
Q Consensus 246 ~~L~~-kr~LlVlDdv~~~ 263 (780)
..++. ..-+||+|-|-..
T Consensus 1503 ~~~~s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTC
T ss_pred HHHHcCCCCEEEEccHHhC
Confidence 66655 5669999988443
No 453
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.12 E-value=0.1 Score=51.71 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
...+++|+|+.|+|||||.+.++.-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999998654
No 454
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.12 E-value=0.37 Score=46.08 Aligned_cols=32 Identities=25% Similarity=0.234 Sum_probs=26.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCe
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDE 204 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 204 (780)
...|.|.|+.|+||||+++.+.+..... .+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 4689999999999999999999988654 3444
No 455
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.07 E-value=0.11 Score=51.25 Aligned_cols=26 Identities=46% Similarity=0.602 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...+++|+|+.|+|||||++.++.-.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34689999999999999999986543
No 456
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.06 E-value=0.55 Score=51.14 Aligned_cols=58 Identities=22% Similarity=0.278 Sum_probs=41.3
Q ss_pred HHHHHHc-cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCC-CHHHHHHHH
Q 037947 162 DIMEALK-DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKP-DYKAIQNEI 223 (780)
Q Consensus 162 ~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~~~~i 223 (780)
+.++.|. -.+...++|.|..|+|||+|+.++.+.. +-+.++++-+++.. .+.++.+++
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4556655 2345679999999999999999998763 24678888888763 344555443
No 457
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=91.01 E-value=0.26 Score=49.07 Aligned_cols=39 Identities=26% Similarity=0.493 Sum_probs=30.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK 213 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 213 (780)
++|+|.|.||+||||+|..++......+ ..++-|.....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G--~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG--KTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC--CcEEEEcCCCC
Confidence 5788899999999999999999887542 24666666543
No 458
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.95 E-value=0.12 Score=51.66 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
...+++|+|+.|+|||||.+.++--
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4568999999999999999998653
No 459
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.93 E-value=0.71 Score=50.07 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=41.7
Q ss_pred HHHHHHc-cCCccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCC-HHHHHHHH
Q 037947 162 DIMEALK-DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPD-YKAIQNEI 223 (780)
Q Consensus 162 ~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~~~~i 223 (780)
+.++.|. -.+...++|.|..|+|||+|++.+.+.. +-+.++++-+++..+ +.++.+++
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 4555554 2345678999999999999999987653 345788888887765 55555554
No 460
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.93 E-value=0.76 Score=48.28 Aligned_cols=115 Identities=10% Similarity=0.134 Sum_probs=83.5
Q ss_pred cCCCCccEEEeccCccccccCchhhcCCCCccEEEecCCCCCCCC-ccccCCCCCCEEEccCccCCC--cccccccCCCc
Q 037947 530 LECPKLKLFFLFSKKLSLVIPDLFFEGVPSLQVLSLNGFHFPSLP-STLGCLINLQTLSFECCVLGD--VATVGALKKLV 606 (780)
Q Consensus 530 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~~~~--~~~i~~l~~L~ 606 (780)
..|.+|+.+.+..+- ..+....|.++..|+.+.+..+ ++.++ ..+..+.+|+.+.+.++.++. ...+.++.+|+
T Consensus 237 ~~~~~L~~i~lp~~v--~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~ 313 (379)
T 4h09_A 237 YGMKALDEIAIPKNV--TSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLS 313 (379)
T ss_dssp TTCSSCCEEEECTTC--CEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCC
T ss_pred cCCccceEEEcCCCc--cEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCC
Confidence 378889998887652 2466667788899999998643 55554 356788999999999887766 35678899999
Q ss_pred EEEeecCCCCccCh-hhcCCCCCCEEecCCCCCCcccCccccCCC
Q 037947 607 ILSFRNSHIEQLPE-EIGQLTRLKLLDLSNCSKLKSIRPNVISNL 650 (780)
Q Consensus 607 ~L~l~~~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~l~~l 650 (780)
.+.+..+ ++.++. .+..+++|+.+.+.. .++.+....+..+
T Consensus 314 ~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~--~v~~I~~~aF~~c 355 (379)
T 4h09_A 314 SVTLPTA-LKTIQVYAFKNCKALSTISYPK--SITLIESGAFEGS 355 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCTTCCCCCCCT--TCCEECTTTTTTS
T ss_pred EEEcCcc-ccEEHHHHhhCCCCCCEEEECC--ccCEEchhHhhCC
Confidence 9999654 777754 567788888888864 4565655444444
No 461
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.86 E-value=0.17 Score=49.50 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...+|+|.|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 462
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=90.86 E-value=0.12 Score=52.80 Aligned_cols=26 Identities=23% Similarity=0.402 Sum_probs=22.5
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..++|.|+|+.|+||||||..++...
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 34689999999999999999998753
No 463
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.80 E-value=0.13 Score=52.42 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 464
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.75 E-value=0.25 Score=53.85 Aligned_cols=45 Identities=11% Similarity=-0.071 Sum_probs=33.8
Q ss_pred CCchHHHHHHHHHHc--cCCccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 154 ESRMPTFQDIMEALK--DDNINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 154 ~gr~~~~~~l~~~L~--~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
..|.+..+.+.+... ..+..+|.+.|++|+||||+|+.+.+....
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 355555556666542 334578999999999999999999998864
No 465
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.71 E-value=0.12 Score=50.82 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...+++|+|+.|+|||||.+.++.-.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999987543
No 466
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.63 E-value=0.2 Score=47.96 Aligned_cols=37 Identities=27% Similarity=0.245 Sum_probs=27.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEcc
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQ 212 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 212 (780)
.|.+.|.||+||||+|..+......++ + .+.++.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G-~-~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQG-V-RVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTT-C-CEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCC-C-CEEEEEeCC
Confidence 478899999999999999998876553 2 344555544
No 467
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=90.60 E-value=0.13 Score=50.89 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
...+++|+|+.|+|||||.+.++.-
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999998754
No 468
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=90.58 E-value=0.16 Score=45.77 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
+.|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999764
No 469
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.58 E-value=0.29 Score=48.02 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=32.1
Q ss_pred EEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHH
Q 037947 175 IGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKA 218 (780)
Q Consensus 175 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 218 (780)
|+|.|.||+||||+|..++......+ ..++-|......+...
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l~~ 44 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCLGQ 44 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcChHH
Confidence 66799999999999999999887653 4567777766555443
No 470
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=90.58 E-value=0.31 Score=49.18 Aligned_cols=40 Identities=30% Similarity=0.518 Sum_probs=30.5
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccC
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQK 213 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 213 (780)
.++|+|.|.||+||||+|..++......+ ..++-|.....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G--~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMG--KKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCC--CeEEEEecCCC
Confidence 36888899999999999999998876542 24566666543
No 471
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.58 E-value=0.15 Score=48.24 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
-.|+|+|..|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999865
No 472
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.57 E-value=0.16 Score=53.35 Aligned_cols=27 Identities=22% Similarity=0.071 Sum_probs=23.7
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+...+++|+|++|+|||||++.+....
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999999754
No 473
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=90.49 E-value=0.13 Score=51.61 Aligned_cols=26 Identities=31% Similarity=0.441 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...+++|+|+.|+|||||.+.++.-.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45689999999999999999987543
No 474
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.43 E-value=0.15 Score=46.45 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVAR 194 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~ 194 (780)
..|+|+|.+|+|||||.+.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999975
No 475
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=90.29 E-value=0.12 Score=55.35 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=23.4
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
....+|.|+|++|+||||+|+.+....
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 456899999999999999999987643
No 476
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.27 E-value=0.14 Score=47.71 Aligned_cols=21 Identities=43% Similarity=0.594 Sum_probs=19.2
Q ss_pred EEEEEcCCCChHHHHHHHHHH
Q 037947 174 VIGIYGIGGVGKTTLVKQVAR 194 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~ 194 (780)
-|+|+|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999999875
No 477
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.26 E-value=0.3 Score=45.63 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
....|+|+|.+|+|||||+..+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999998764
No 478
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.21 E-value=0.15 Score=50.92 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHHHh
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
.++|+|+.|+|||||.+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999999999999999988653
No 479
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=90.19 E-value=0.24 Score=52.97 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=59.8
Q ss_pred HHHHHHc-cCCccEEEEEcCCCChHHHHHHHHHHHHhccCC--CCeEEEEEEccCC-CHHHHHHHHHHHcCC-------C
Q 037947 162 DIMEALK-DDNINVIGIYGIGGVGKTTLVKQVARRVMEDKL--FDEVVMVVVSQKP-DYKAIQNEIAGALGL-------F 230 (780)
Q Consensus 162 ~l~~~L~-~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~-~~~~~~~~i~~~l~~-------~ 230 (780)
+.++.+. =.+...++|.|.+|+|||+|+.++++.....+. =+.++++-+++.. .+.++.+++...=.. .
T Consensus 141 r~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~ 220 (469)
T 2c61_A 141 STIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLN 220 (469)
T ss_dssp HHHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEE
T ss_pred EeeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEE
Confidence 3455544 123455788999999999999999988754221 1357777777764 466777776643111 1
Q ss_pred cCCCCCHH------HHHHHHHHHhc---cCcEEEEEeCC
Q 037947 231 LGEHEDVS------ERAHLLRQRLK---ASRVLVILDDV 260 (780)
Q Consensus 231 ~~~~~~~~------~~~~~l~~~L~---~kr~LlVlDdv 260 (780)
..+++ .. ...-.+.+++. ++..|+++||+
T Consensus 221 tsd~p-~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 221 LADDP-AVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp ETTSC-HHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 11111 11 12233555554 59999999997
No 480
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=90.18 E-value=0.16 Score=51.19 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
...++.|+|++|+|||||+..++....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 357899999999999999999987554
No 481
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.13 E-value=0.17 Score=53.09 Aligned_cols=25 Identities=44% Similarity=0.571 Sum_probs=22.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHHHHh
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARRVM 197 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~~~ 197 (780)
++|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5899999999999999999998753
No 482
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.13 E-value=0.31 Score=48.03 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=28.7
Q ss_pred HHHHHHHHccC--CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 160 FQDIMEALKDD--NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 160 ~~~l~~~L~~~--~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
..-+..|+... ....|.++|++|+|||.+|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 44466666643 24579999999999999999998853
No 483
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.13 E-value=0.18 Score=49.43 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...|+|.|..|+||||+++.+.+..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999875
No 484
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.06 E-value=0.14 Score=52.01 Aligned_cols=27 Identities=22% Similarity=0.345 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
....+++|+|+.|.|||||++.+..-.
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 355789999999999999999986543
No 485
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=89.89 E-value=0.47 Score=45.23 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=32.0
Q ss_pred EEEEE-cCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHHH
Q 037947 174 VIGIY-GIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKAI 219 (780)
Q Consensus 174 vv~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 219 (780)
+|+|+ +-||+||||+|..++......+ .++-+......+....
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g---~VlliD~D~q~~~~~~ 45 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG---ETLLIDGDPNRSATGW 45 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS---CEEEEEECTTCHHHHH
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC---CEEEEECCCCCCHHHH
Confidence 56664 8899999999999999887652 6777777766554433
No 486
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.89 E-value=0.19 Score=52.23 Aligned_cols=26 Identities=31% Similarity=0.506 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
....+++|+|+.|.|||||.+.+.--
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcC
Confidence 34578999999999999999998654
No 487
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.88 E-value=0.13 Score=48.02 Aligned_cols=25 Identities=28% Similarity=0.237 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.+.|.|.|+.|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999999999997653
No 488
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.86 E-value=0.18 Score=52.37 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...+++|+|+.|+|||||.+.++--.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 45689999999999999999997643
No 489
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.75 E-value=0.3 Score=53.97 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=30.9
Q ss_pred CchHHHHHHHHHH--ccCCccEEEEEcCCCChHHHHHHHHHHHHhc
Q 037947 155 SRMPTFQDIMEAL--KDDNINVIGIYGIGGVGKTTLVKQVARRVME 198 (780)
Q Consensus 155 gr~~~~~~l~~~L--~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~ 198 (780)
.+.+..+.+.... .-.+..+|+|+|+.|+|||||++.+......
T Consensus 350 ~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 350 SFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp SCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 3444444444433 1234578999999999999999999988754
No 490
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.75 E-value=0.15 Score=54.66 Aligned_cols=28 Identities=43% Similarity=0.555 Sum_probs=24.4
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
..+|.|+|.+|+||||++..++.....+
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999877643
No 491
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.72 E-value=0.22 Score=52.80 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=22.3
Q ss_pred CCccEEEEEcCCCChHHHHHHHHHH
Q 037947 170 DNINVIGIYGIGGVGKTTLVKQVAR 194 (780)
Q Consensus 170 ~~~~vv~I~G~gGiGKTtLa~~v~~ 194 (780)
....+++|+|+.|+|||||.+.+..
T Consensus 67 ~~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 67 SSVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp HCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhC
Confidence 3456999999999999999999987
No 492
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.71 E-value=0.15 Score=52.37 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
+.++++|+|+.|.|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999998653
No 493
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=89.68 E-value=0.17 Score=45.62 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHHH
Q 037947 174 VIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 174 vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48899999999999999998653
No 494
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=89.66 E-value=0.26 Score=45.96 Aligned_cols=28 Identities=21% Similarity=-0.037 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHHHhcc
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARRVMED 199 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~ 199 (780)
..++.|+|+.|+||||++..++.+....
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~ 30 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG 30 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 3578999999999999997777766543
No 495
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.63 E-value=0.16 Score=51.16 Aligned_cols=26 Identities=23% Similarity=0.433 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...+++|+|+.|+|||||.+.+..-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 45789999999999999999997653
No 496
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.58 E-value=0.36 Score=45.69 Aligned_cols=44 Identities=25% Similarity=0.286 Sum_probs=32.1
Q ss_pred cEEEEE-cCCCChHHHHHHHHHHHHhccCCCCeEEEEEEccCCCHHH
Q 037947 173 NVIGIY-GIGGVGKTTLVKQVARRVMEDKLFDEVVMVVVSQKPDYKA 218 (780)
Q Consensus 173 ~vv~I~-G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 218 (780)
++|+|+ +.||+||||+|..++...... -..++.+......+...
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~--g~~vlliD~D~~~~~~~ 46 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRS--GYNIAVVDTDPQMSLTN 46 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHT--TCCEEEEECCTTCHHHH
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHC--CCeEEEEECCCCCCHHH
Confidence 578887 789999999999999987754 23466777665544433
No 497
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.58 E-value=0.16 Score=50.41 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.2
Q ss_pred ccEEEEEcCCCChHHHHHHHHHHH
Q 037947 172 INVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 172 ~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
..+++|+|+.|+|||||.+.++.-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 568999999999999999998653
No 498
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.58 E-value=0.13 Score=50.05 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
+..+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4578999999999999999998764
No 499
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=89.55 E-value=0.19 Score=45.58 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHHH
Q 037947 173 NVIGIYGIGGVGKTTLVKQVARR 195 (780)
Q Consensus 173 ~vv~I~G~gGiGKTtLa~~v~~~ 195 (780)
--|.|+|.+|+|||||+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 500
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.17 E-value=0.23 Score=51.96 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCChHHHHHHHHHHHH
Q 037947 171 NINVIGIYGIGGVGKTTLVKQVARRV 196 (780)
Q Consensus 171 ~~~vv~I~G~gGiGKTtLa~~v~~~~ 196 (780)
...+++|+|+.|+|||||.+.+.--.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 45689999999999999999997543
Done!