BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037949
(243 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OND|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenosine
pdb|3OND|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenosine
pdb|3ONE|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenine
pdb|3ONE|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Adenine
pdb|3ONF|A Chain A, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Cordycepin
pdb|3ONF|B Chain B, Crystal Structure Of Lupinus Luteus
S-Adenosyl-L-Homocysteine Hydrolase In Complex With
Cordycepin
Length = 488
Score = 323 bits (829), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 174/276 (63%), Positives = 190/276 (68%), Gaps = 35/276 (12%)
Query: 2 MKEMLVSVSEETTMGVKRLYQMQANGXX-----XXXXXXXXXXXDNLYGFRHSLPDGLMR 56
MK+ +V VSEETT GVKRLYQMQANG DNLYG RHSLPDGLMR
Sbjct: 198 MKDRVVGVSEETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGLMR 257
Query: 57 ATDITIAGKIAVDCGHGDVGRGCAAALKAVGARVMGTEIDLICALQALTEGIPVLTREDV 116
ATD+ IAGK+AV G+GDVG+GCAAALK GARV+ TEID ICALQA EG+ VLT EDV
Sbjct: 258 ATDVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDV 317
Query: 117 VSEAGLFVTTTENADIIMVRHMKQMKNAAIVCNIGHFDNEIDMLDLEAYRGIKRITIKPQ 176
VSEA +FVTTT N DIIM+ HMK+MKN AIVCNIGHFDNEIDML LE + G+KRITIKPQ
Sbjct: 318 VSEADIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGHFDNEIDMLGLETHPGVKRITIKPQ 377
Query: 177 TDPWVFPQTRRGIIILAERLLMNLGCPTGHPSFVMSCSFTNQ------------------ 218
TD WVFP+T GIIILAE LMNLGC TGHPSFVMSCSFTNQ
Sbjct: 378 TDRWVFPETNTGIIILAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEK 437
Query: 219 ------------AAALHLGKPGDKFRKLTPEQAACI 242
AALHL K G K KL+ +QA I
Sbjct: 438 KVYVLPKHLDEKVAALHLEKLGAKLTKLSKDQADYI 473
>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|B Chain B, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|C Chain C, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
pdb|3H9U|D Chain D, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma
Brucei
Length = 436
Score = 223 bits (567), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 134/276 (48%), Positives = 157/276 (56%), Gaps = 41/276 (14%)
Query: 6 LVSVSEETTMGVKRLYQMQANGXXX-----XXXXXXXXXXDNLYGFRHSLPDGLMRATDI 60
+ VSEETT GVK LY+ G DNLYG R SL DG+ RATD+
Sbjct: 148 IYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIKRATDV 207
Query: 61 TIAGKIAVDCGHGDVGRGCAAALKAVGARVMGTEIDLICALQALTEGIPVLTREDVVSEA 120
IAGK A CG+GDVG+GCAAAL+ GARV+ TE+D I ALQA EG VL EDVV EA
Sbjct: 208 MIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEA 267
Query: 121 GLFVTTTENADIIMVRHMKQMKNAAIVCNIGHFDNEIDMLDLEAYRGIKRITIKPQTDPW 180
+FVTTT N DII H +M++ AIVCNIGHFD EI + L+A +R+ +KPQ D +
Sbjct: 268 HIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKA-NAKERVEVKPQVDRY 326
Query: 181 VFPQTRRGIIILAERLLMNLGCPTGHPSFVMSCSFTNQ---------------------- 218
R II+LAE L+NLGC +GHPSFVMS SF NQ
Sbjct: 327 TMANGRH-IILLAEGRLVNLGCASGHPSFVMSNSFCNQVLAQIELWTNRDTGKYPRGAKA 385
Query: 219 ------------AAALHLGKPGDKFRKLTPEQAACI 242
AALHLGK G K KLTP+QA I
Sbjct: 386 QVYFLPKKLDEKVAALHLGKLGAKLTKLTPKQAEYI 421
>pdb|3DHY|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|B Chain B, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|C Chain C, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|3DHY|D Chain D, Crystal Structures Of Mycobacterium Tuberculosis
S-Adenosyl- Homocysteine Hydrolase In Ternary Complex
With Substrate An Inhibitors
pdb|2ZIZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZIZ|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-adenosyl-l- Homocysteine Hydrolase In Ternary Complex
With Nad And 3- Deazaadenosine
pdb|2ZJ0|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ0|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 2- Fluoroadenosine
pdb|2ZJ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
pdb|2ZJ1|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And 3'-Keto- Aristeromycin
Length = 495
Score = 221 bits (562), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 121/236 (51%), Positives = 147/236 (62%), Gaps = 7/236 (2%)
Query: 2 MKEMLVSVSEETTMGVKRLYQMQANG-----XXXXXXXXXXXXXDNLYGFRHSLPDGLMR 56
+ E + V+EETT GV RLYQ A G DN YG RHSL DG+ R
Sbjct: 208 IAESVKGVTEETTTGVLRLYQFAAAGDLAFPAINVNDSVTKSKFDNKYGTRHSLIDGINR 267
Query: 57 ATDITIAGKIAVDCGHGDVGRGCAAALKAVGARVMGTEIDLICALQALTEGIPVLTREDV 116
TD I GK + CG+GDVG+GCA A+K GARV TEID I ALQA+ EG V+T E+
Sbjct: 268 GTDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEA 327
Query: 117 VSEAGLFVTTTENADIIMVRHMKQMKNAAIVCNIGHFDNEIDMLDLEAYRGIKRITIKPQ 176
+ +A + VT T N DIIM+ H+K MK+ AI+ NIGHFDNEIDM LE G R+ +KPQ
Sbjct: 328 IGDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLER-SGATRVNVKPQ 386
Query: 177 TDPWVFPQTRRGIIILAERLLMNLGCPTGHPSFVMSCSFTNQA-AALHLGKPGDKF 231
D W F T R II+L+E L+NLG TGHPSFVMS SF NQ A + L D++
Sbjct: 387 VDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKNDEY 442
>pdb|3CE6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
pdb|3CE6|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis
S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex
With Nad And Adenosine
Length = 494
Score = 221 bits (562), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 121/236 (51%), Positives = 147/236 (62%), Gaps = 7/236 (2%)
Query: 2 MKEMLVSVSEETTMGVKRLYQMQANG-----XXXXXXXXXXXXXDNLYGFRHSLPDGLMR 56
+ E + V+EETT GV RLYQ A G DN YG RHSL DG+ R
Sbjct: 207 IAESVKGVTEETTTGVLRLYQFAAAGDLAFPAINVNDSVTKSKFDNKYGTRHSLIDGINR 266
Query: 57 ATDITIAGKIAVDCGHGDVGRGCAAALKAVGARVMGTEIDLICALQALTEGIPVLTREDV 116
TD I GK + CG+GDVG+GCA A+K GARV TEID I ALQA+ EG V+T E+
Sbjct: 267 GTDALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEA 326
Query: 117 VSEAGLFVTTTENADIIMVRHMKQMKNAAIVCNIGHFDNEIDMLDLEAYRGIKRITIKPQ 176
+ +A + VT T N DIIM+ H+K MK+ AI+ NIGHFDNEIDM LE G R+ +KPQ
Sbjct: 327 IGDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLER-SGATRVNVKPQ 385
Query: 177 TDPWVFPQTRRGIIILAERLLMNLGCPTGHPSFVMSCSFTNQA-AALHLGKPGDKF 231
D W F T R II+L+E L+NLG TGHPSFVMS SF NQ A + L D++
Sbjct: 386 VDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKNDEY 441
>pdb|1V8B|A Chain A, Crystal Structure Of A Hydrolase
pdb|1V8B|B Chain B, Crystal Structure Of A Hydrolase
pdb|1V8B|C Chain C, Crystal Structure Of A Hydrolase
pdb|1V8B|D Chain D, Crystal Structure Of A Hydrolase
Length = 479
Score = 220 bits (560), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 115/230 (50%), Positives = 149/230 (64%), Gaps = 7/230 (3%)
Query: 6 LVSVSEETTMGVKRLYQMQANGXXXXXX-----XXXXXXXDNLYGFRHSLPDGLMRATDI 60
++ VSEETT GV RL +M DN+YG RHSLPDGLMRATD
Sbjct: 194 IIGVSEETTTGVLRLKKMDKQNELLFTAINVNDAVTKQKYDNVYGCRHSLPDGLMRATDF 253
Query: 61 TIAGKIAVDCGHGDVGRGCAAALKAVGARVMGTEIDLICALQALTEGIPVLTREDVVSEA 120
I+GKI V CG+GDVG+GCA+++K +GARV TEID ICA+QA+ EG V+T +++V +
Sbjct: 254 LISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKG 313
Query: 121 GLFVTTTENADIIMVRHMKQMKNAAIVCNIGHFDNEIDMLDLEAYRGIKRITIKPQTDPW 180
F+T T N D+I + H+ +MKN A+V NIGHFD+EI + +L Y+GI +KPQ D
Sbjct: 314 DFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVDRI 373
Query: 181 VFPQTRRGIIILAERLLMNLGCPTGHPSFVMSCSFTNQA-AALHLGKPGD 229
P + II+LA L+NLGC TGHP+FVMS SF NQ A L L + D
Sbjct: 374 TLPNGNK-IIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKD 422
>pdb|3D64|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei
pdb|3D64|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei
pdb|3GLQ|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei In Complex With 9-Beta-D-
Arabino-Furansyl-Adenine
pdb|3GLQ|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Burkholderia Pseudomallei In Complex With 9-Beta-D-
Arabino-Furansyl-Adenine
Length = 494
Score = 219 bits (557), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 127/267 (47%), Positives = 156/267 (58%), Gaps = 37/267 (13%)
Query: 9 VSEETTMGVKRLYQMQANG-----XXXXXXXXXXXXXDNLYGFRHSLPDGLMRATDITIA 63
V+EETT GV RLYQM+ +G DNLYG R SL DG+ RATD+ IA
Sbjct: 217 VTEETTTGVHRLYQMEKDGRLPFPAFNVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIA 276
Query: 64 GKIAVDCGHGDVGRGCAAALKAVGARVMGTEIDLICALQALTEGIPVLTREDVVSEAGLF 123
GKIAV G+GDVG+GCA +L+ +GA V TEID ICALQA EG V+T E +A +F
Sbjct: 277 GKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIF 336
Query: 124 VTTTENADIIMVRHMKQMKNAAIVCNIGHFDNEIDMLDLEAYRGIKRITIKPQTDPWVFP 183
VT T N +I HMK M++ AIVCNIGHFD+EID+ Y + IKPQ D +FP
Sbjct: 337 VTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQY---QWENIKPQVDHIIFP 393
Query: 184 QTRRGIIILAERLLMNLGCPTGHPSFVMSCSFTNQA------------------------ 219
+R +I+LAE L+NLGC TGHPSFVMS SFTNQ
Sbjct: 394 DGKR-VILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTRGGEYANKVYVLPKHL 452
Query: 220 ----AALHLGKPGDKFRKLTPEQAACI 242
A LHL + G + +L+ +QAA I
Sbjct: 453 DEKVARLHLARIGAQLSELSDDQAAYI 479
>pdb|1LI4|A Chain A, Human S-Adenosylhomocysteine Hydrolase Complexed With
Neplanocin
Length = 432
Score = 216 bits (549), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 129/264 (48%), Positives = 153/264 (57%), Gaps = 35/264 (13%)
Query: 9 VSEETTMGVKRLYQMQANG-----XXXXXXXXXXXXXDNLYGFRHSLPDGLMRATDITIA 63
+SEETT GV LY+M ANG DNLYG R SL DG+ RATD+ IA
Sbjct: 153 ISEETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIA 212
Query: 64 GKIAVDCGHGDVGRGCAAALKAVGARVMGTEIDLICALQALTEGIPVLTREDVVSEAGLF 123
GK+AV G+GDVG+GCA AL+ GARV+ TEID I ALQA EG V T ++ E +F
Sbjct: 213 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIF 272
Query: 124 VTTTENADIIMVRHMKQMKNAAIVCNIGHFDNEIDMLDLEAYRGIKRITIKPQTDPWVFP 183
VTTT DII+ RH +QMK+ AIVCNIGHFD EID+ L ++++ IKPQ D +
Sbjct: 273 VTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNE-NAVEKVNIKPQVDRYRLK 331
Query: 184 QTRRGIIILAERLLMNLGCPTGHPSFVMSCSFTNQ------------------------- 218
RR II+LAE L+NLGC GHPSFVMS SFTNQ
Sbjct: 332 NGRR-IILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVHFLPKKL 390
Query: 219 ---AAALHLGKPGDKFRKLTPEQA 239
A HLGK K KLT +QA
Sbjct: 391 DEAVAEAHLGKLNVKLTKLTEKQA 414
>pdb|3NJ4|A Chain A, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|B Chain B, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|C Chain C, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
pdb|3NJ4|D Chain D, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine
Hydrolase
Length = 435
Score = 215 bits (548), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 129/264 (48%), Positives = 153/264 (57%), Gaps = 35/264 (13%)
Query: 9 VSEETTMGVKRLYQMQANG-----XXXXXXXXXXXXXDNLYGFRHSLPDGLMRATDITIA 63
+SEETT GV LY+M ANG DNLYG R SL DG+ RATD+ IA
Sbjct: 156 ISEETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIA 215
Query: 64 GKIAVDCGHGDVGRGCAAALKAVGARVMGTEIDLICALQALTEGIPVLTREDVVSEAGLF 123
GK+AV G+GDVG+GCA AL+ GARV+ TEID I ALQA EG V T ++ E +F
Sbjct: 216 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIF 275
Query: 124 VTTTENADIIMVRHMKQMKNAAIVCNIGHFDNEIDMLDLEAYRGIKRITIKPQTDPWVFP 183
VTTT DII+ RH +QMK+ AIVCNIGHFD EID+ L ++++ IKPQ D +
Sbjct: 276 VTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNE-NAVEKVNIKPQVDRYRLK 334
Query: 184 QTRRGIIILAERLLMNLGCPTGHPSFVMSCSFTNQ------------------------- 218
RR II+LAE L+NLGC GHPSFVMS SFTNQ
Sbjct: 335 NGRR-IILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVHFLPKKL 393
Query: 219 ---AAALHLGKPGDKFRKLTPEQA 239
A HLGK K KLT +QA
Sbjct: 394 DEAVAEAHLGKLNVKLTKLTEKQA 417
>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|B Chain B, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|C Chain C, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1B3R|D Chain D, Rat Liver S-Adenosylhomocystein Hydrolase
pdb|1K0U|A Chain A, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|B Chain B, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|C Chain C, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|D Chain D, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|E Chain E, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|F Chain F, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|G Chain G, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1K0U|H Chain H, Inhibition Of S-Adenosylhomocysteine Hydrolase By "acyclic
Sugar" Adenosine Analogue D-Eritadenine
pdb|1KY4|A Chain A, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|B Chain B, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|C Chain C, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY4|D Chain D, S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|2H5L|A Chain A, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|B Chain B, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|C Chain C, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|D Chain D, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|E Chain E, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|F Chain F, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|G Chain G, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
pdb|2H5L|H Chain H, S-adenosylhomocysteine Hydrolase Containing Nad And
3-deaza- D-eritadenine
Length = 431
Score = 215 bits (547), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/264 (48%), Positives = 153/264 (57%), Gaps = 35/264 (13%)
Query: 9 VSEETTMGVKRLYQMQANG-----XXXXXXXXXXXXXDNLYGFRHSLPDGLMRATDITIA 63
+SEETT GV LY+M ANG DNLYG R SL DG+ RATD+ IA
Sbjct: 152 ISEETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIA 211
Query: 64 GKIAVDCGHGDVGRGCAAALKAVGARVMGTEIDLICALQALTEGIPVLTREDVVSEAGLF 123
GK+AV G+GDVG+GCA AL+ GARV+ TEID I ALQA EG V T ++ E +F
Sbjct: 212 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACKEGNIF 271
Query: 124 VTTTENADIIMVRHMKQMKNAAIVCNIGHFDNEIDMLDLEAYRGIKRITIKPQTDPWVFP 183
VTTT DII+ RH +QMK+ AIVCNIGHFD EID+ L ++++ IKPQ D ++
Sbjct: 272 VTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNE-NAVEKVNIKPQVDRYLLK 330
Query: 184 QTRRGIIILAERLLMNLGCPTGHPSFVMSCSFTNQ------------------------- 218
R II+LAE L+NLGC GHPSFVMS SFTNQ
Sbjct: 331 NGHR-IILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVHFLPKKL 389
Query: 219 ---AAALHLGKPGDKFRKLTPEQA 239
A HLGK K KLT +QA
Sbjct: 390 DEAVAEAHLGKLNVKLTKLTEKQA 413
>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|B Chain B, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|C Chain C, K185n Mutated S-adenosylhomocysteine Hydrolase
pdb|1XWF|D Chain D, K185n Mutated S-adenosylhomocysteine Hydrolase
Length = 431
Score = 215 bits (547), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 128/264 (48%), Positives = 153/264 (57%), Gaps = 35/264 (13%)
Query: 9 VSEETTMGVKRLYQMQANG-----XXXXXXXXXXXXXDNLYGFRHSLPDGLMRATDITIA 63
+SEETT GV LY+M ANG DNLYG R SL DG+ RATD+ IA
Sbjct: 152 ISEETTTGVHNLYKMMANGILKVPAINVNDSVTNSKFDNLYGCRESLIDGIKRATDVMIA 211
Query: 64 GKIAVDCGHGDVGRGCAAALKAVGARVMGTEIDLICALQALTEGIPVLTREDVVSEAGLF 123
GK+AV G+GDVG+GCA AL+ GARV+ TEID I ALQA EG V T ++ E +F
Sbjct: 212 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACKEGNIF 271
Query: 124 VTTTENADIIMVRHMKQMKNAAIVCNIGHFDNEIDMLDLEAYRGIKRITIKPQTDPWVFP 183
VTTT DII+ RH +QMK+ AIVCNIGHFD EID+ L ++++ IKPQ D ++
Sbjct: 272 VTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNE-NAVEKVNIKPQVDRYLLK 330
Query: 184 QTRRGIIILAERLLMNLGCPTGHPSFVMSCSFTNQ------------------------- 218
R II+LAE L+NLGC GHPSFVMS SFTNQ
Sbjct: 331 NGHR-IILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVHFLPKKL 389
Query: 219 ---AAALHLGKPGDKFRKLTPEQA 239
A HLGK K KLT +QA
Sbjct: 390 DEAVAEAHLGKLNVKLTKLTEKQA 413
>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|B Chain B, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|C Chain C, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1D4F|D Chain D, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S-
Adenosylhomocysteine Hydrolase
pdb|1KY5|A Chain A, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|B Chain B, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|C Chain C, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
pdb|1KY5|D Chain D, D244e Mutant S-Adenosylhomocysteine Hydrolase Refined With
Noncrystallographic Restraints
Length = 431
Score = 213 bits (543), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 127/264 (48%), Positives = 153/264 (57%), Gaps = 35/264 (13%)
Query: 9 VSEETTMGVKRLYQMQANG-----XXXXXXXXXXXXXDNLYGFRHSLPDGLMRATDITIA 63
+SEETT GV LY+M ANG DNLYG R SL DG+ RATD+ IA
Sbjct: 152 ISEETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIA 211
Query: 64 GKIAVDCGHGDVGRGCAAALKAVGARVMGTEIDLICALQALTEGIPVLTREDVVSEAGLF 123
GK+AV G+GDVG+GCA AL+ GARV+ TEI+ I ALQA EG V T ++ E +F
Sbjct: 212 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIEPINALQAAMEGYEVTTMDEACKEGNIF 271
Query: 124 VTTTENADIIMVRHMKQMKNAAIVCNIGHFDNEIDMLDLEAYRGIKRITIKPQTDPWVFP 183
VTTT DII+ RH +QMK+ AIVCNIGHFD EID+ L ++++ IKPQ D ++
Sbjct: 272 VTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNE-NAVEKVNIKPQVDRYLLK 330
Query: 184 QTRRGIIILAERLLMNLGCPTGHPSFVMSCSFTNQ------------------------- 218
R II+LAE L+NLGC GHPSFVMS SFTNQ
Sbjct: 331 NGHR-IILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVHFLPKKL 389
Query: 219 ---AAALHLGKPGDKFRKLTPEQA 239
A HLGK K KLT +QA
Sbjct: 390 DEAVAEAHLGKLNVKLTKLTEKQA 413
>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|B Chain B, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|C Chain C, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
pdb|3G1U|D Chain D, Crystal Structure Of Leishmania Major S-
Adenosylhomocysteine Hydrolase
Length = 437
Score = 213 bits (541), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 129/277 (46%), Positives = 156/277 (56%), Gaps = 41/277 (14%)
Query: 6 LVSVSEETTMGVKRLYQMQANG-----XXXXXXXXXXXXXDNLYGFRHSLPDGLMRATDI 60
+ +SEETT GVK LY+ + G DNLYG R SL DG+ RATD+
Sbjct: 149 IFGISEETTTGVKNLYKRLSKGNLPISAINVNDSVTKSKFDNLYGCRESLVDGIKRATDV 208
Query: 61 TIAGKIAVDCGHGDVGRGCAAALKAVGARVMGTEIDLICALQALTEGIPVLTREDVVSEA 120
IAGK CG+GDVG+GCAAAL+A GARV+ TE+D I ALQA EG V EDV+++A
Sbjct: 209 MIAGKTCCVCGYGDVGKGCAAALRAFGARVVVTEVDPINALQASMEGYQVALVEDVMADA 268
Query: 121 GLFVTTTENADIIMVRHMKQMKNAAIVCNIGHFDNEIDMLDLEAYRGIKRITIKPQTDPW 180
+FVTTT N DII H M++ AIVCNIGHFD EI + LEA + + IKPQ D +
Sbjct: 269 HIFVTTTGNDDIITSDHFPHMRDDAIVCNIGHFDTEIQVGWLEA-NAKEHVEIKPQVDRY 327
Query: 181 VFPQTRRGIIILAERLLMNLGCPTGHPSFVMSCSFTNQ---------------------- 218
+ R II+LA+ L+NLGC +GHPSFVMS SFTNQ
Sbjct: 328 TM-ENGRHIILLAKGRLVNLGCASGHPSFVMSNSFTNQVLAQIELWSNRDNGKYPRGDKA 386
Query: 219 ------------AAALHLGKPGDKFRKLTPEQAACIR 243
AALHL G K KLTP+QA I
Sbjct: 387 GVFFLPKALDEKVAALHLAHVGAKLTKLTPKQAEYIN 423
>pdb|3N58|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|B Chain B, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|C Chain C, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
pdb|3N58|D Chain D, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase
From Brucella Melitensis In Ternary Complex With Nad And
Adenosine, Orthorhombic Form
Length = 464
Score = 211 bits (537), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/267 (46%), Positives = 152/267 (56%), Gaps = 37/267 (13%)
Query: 9 VSEETTMGVKRLYQMQANG-----XXXXXXXXXXXXXDNLYGFRHSLPDGLMRATDITIA 63
V+EETT GV RLYQ+Q G DN YG + SL DG+ R TD+ +A
Sbjct: 187 VTEETTTGVNRLYQLQKKGLLPFPAINVNDSVTKSKFDNKYGCKESLVDGIRRGTDVMMA 246
Query: 64 GKIAVDCGHGDVGRGCAAALKAVGARVMGTEIDLICALQALTEGIPVLTREDVVSEAGLF 123
GK+AV CG+GDVG+G A +L GARV TE+D ICALQA +G V+T +D S A +
Sbjct: 247 GKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIV 306
Query: 124 VTTTENADIIMVRHMKQMKNAAIVCNIGHFDNEIDMLDLEAYRGIKRITIKPQTDPWVFP 183
VTTT N D+I + HM++MK+ IV NIGHFDNEI + A R +K +KPQ D FP
Sbjct: 307 VTTTGNKDVITIDHMRKMKDMCIVGNIGHFDNEI---QVAALRNLKWTNVKPQVDLIEFP 363
Query: 184 QTRRGIIILAERLLMNLGCPTGHPSFVMSCSFTNQ------------------------- 218
+R +I+L+E L+NLG TGHPSFVMS SFTNQ
Sbjct: 364 DGKR-LILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTRTDAYKNEVYVLPKHL 422
Query: 219 ---AAALHLGKPGDKFRKLTPEQAACI 242
A LHL K G K L+ EQAA I
Sbjct: 423 DEKVARLHLDKLGAKLTVLSEEQAAYI 449
>pdb|1A7A|A Chain A, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
pdb|1A7A|B Chain B, Structure Of Human Placental S-adenosylhomocysteine
Hydrolase: Determination Of A 30 Selenium Atom
Substructure From Data At A Single Wavelength
Length = 432
Score = 209 bits (533), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 126/264 (47%), Positives = 150/264 (56%), Gaps = 35/264 (13%)
Query: 9 VSEETTMGVKRLYQMQANG-----XXXXXXXXXXXXXDNLYGFRHSLPDGLMRATDITIA 63
+SEETT GV LY+ ANG DNLYG R SL DG+ RATD+ IA
Sbjct: 153 ISEETTTGVHNLYKXXANGILKVPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVXIA 212
Query: 64 GKIAVDCGHGDVGRGCAAALKAVGARVMGTEIDLICALQALTEGIPVLTREDVVSEAGLF 123
GK+AV G+GDVG+GCA AL+ GARV+ TEID I ALQA EG V T ++ E +F
Sbjct: 213 GKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAXEGYEVTTXDEACQEGNIF 272
Query: 124 VTTTENADIIMVRHMKQMKNAAIVCNIGHFDNEIDMLDLEAYRGIKRITIKPQTDPWVFP 183
VTTT DII+ RH +Q K+ AIVCNIGHFD EID+ L ++++ IKPQ D +
Sbjct: 273 VTTTGCIDIILGRHFEQXKDDAIVCNIGHFDVEIDVKWLNE-NAVEKVNIKPQVDRYRLK 331
Query: 184 QTRRGIIILAERLLMNLGCPTGHPSFVMSCSFTNQAAA---------------------- 221
RR II+LAE L+NLGC GHPSFV S SFTNQ A
Sbjct: 332 NGRR-IILLAEGRLVNLGCAXGHPSFVXSNSFTNQVXAQIELWTHPDKYPVGVHFLPKKL 390
Query: 222 ------LHLGKPGDKFRKLTPEQA 239
HLGK K KLT +QA
Sbjct: 391 DEAVAEAHLGKLNVKLTKLTEKQA 414
>pdb|3MTG|A Chain A, Crystal Structure Of Human S-Adenosyl Homocysteine
Hydrolase Protein
pdb|3MTG|B Chain B, Crystal Structure Of Human S-Adenosyl Homocysteine
Hydrolase Protein
Length = 444
Score = 160 bits (405), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 90/219 (41%), Positives = 128/219 (58%), Gaps = 8/219 (3%)
Query: 9 VSEETTMGVKRLYQMQANG-----XXXXXXXXXXXXXDNLYGFRHSLPDGLMRATDITIA 63
+ EE+ GV RLYQ+ G DNLY R S+ DGL R TD+
Sbjct: 165 IVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKRTTDVMFG 224
Query: 64 GKIAVDCGHGDVGRGCAAALKAVGARVMGTEIDLICALQALTEGIPVLTREDVVSEAGLF 123
GK V CG+G+VG+GC AALKA+GA V TEID ICALQA +G V+ +V+ + +
Sbjct: 225 GKQVVVCGYGEVGKGCCAALKALGAIVYITEIDPICALQACMDGFRVVKLNEVIRQVDVV 284
Query: 124 VTTTENADIIMVRHMKQMKNAAIVCNIGHFDNEIDMLDLEAYRGIKRITIKPQTDPWVFP 183
+T T N +++ H+ +MKN+ IVCN+GH + EID+ L + ++ Q D ++P
Sbjct: 285 ITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVTSLRTPE-LTWERVRSQVDHVIWP 343
Query: 184 QTRRGIIILAERLLMNLGCPTGHPSFVMSCSFTNQAAAL 222
+R +++LAE L+NL C T P+FV+S + T QA AL
Sbjct: 344 DGKR-VVLLAEGRLLNLSCSTV-PTFVLSITATTQALAL 380
>pdb|3GVP|A Chain A, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|B Chain B, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|C Chain C, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|D Chain D, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
Length = 435
Score = 158 bits (399), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 131/226 (57%), Gaps = 8/226 (3%)
Query: 2 MKEMLVSVSEETTMGVKRLYQMQANG-----XXXXXXXXXXXXXDNLYGFRHSLPDGLMR 56
M + + + EE+ GV RLYQ+ G DNLY R S+ DGL R
Sbjct: 153 MFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLKR 212
Query: 57 ATDITIAGKIAVDCGHGDVGRGCAAALKAVGARVMGTEIDLICALQALTEGIPVLTREDV 116
TD+ GK V CG+G+VG+GC AALKA+G+ V TEID ICALQA +G ++ +V
Sbjct: 213 TTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEV 272
Query: 117 VSEAGLFVTTTENADIIMVRHMKQMKNAAIVCNIGHFDNEIDMLDLEAYRGIKRITIKPQ 176
+ + + +T T N +++ H+ +MKN+ IVCN+GH + EID+ L + ++ Q
Sbjct: 273 IRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPE-LTWERVRSQ 331
Query: 177 TDPWVFPQTRRGIIILAERLLMNLGCPTGHPSFVMSCSFTNQAAAL 222
D ++P +R I++LAE L+NL C T P+FV+S + T QA AL
Sbjct: 332 VDHVIWPDGKR-IVLLAEGRLLNLSCST-VPTFVLSITATTQALAL 375
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 11/85 (12%)
Query: 71 GHGDVGRGCAAALKAVGARVMGTE------IDLICALQALTEGIPVLTREDVVSEAGLFV 124
G G +GR A +GA V+G + I+ C +L E VL + D+++ ++
Sbjct: 153 GLGRIGRVAAQIFHGMGATVIGEDVFEIKGIEDYCTQVSLDE---VLEKSDIITIHAPYI 209
Query: 125 TTTENADIIMVRHMKQMKNAAIVCN 149
EN ++ +K+MK+ AI+ N
Sbjct: 210 --KENGAVVTRDFLKKMKDGAILVN 232
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 71 GHGDVGRGCAAALKAVGARVMGTEIDLICALQALTEGIPVLTREDVVSEAGL 122
G GD G C L+ G R D+ A++AL G R D +SEA +
Sbjct: 58 GSGDSGEVCYGRLRVPGQR------DVPVAIKALKAGYTERQRRDFLSEASI 103
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 6/52 (11%)
Query: 71 GHGDVGRGCAAALKAVGARVMGTEIDLICALQALTEGIPVLTREDVVSEAGL 122
G GD G C L+ G R D+ A++AL G R D +SEA +
Sbjct: 58 GSGDSGEVCYGRLRVPGQR------DVPVAIKALKAGYTERQRRDFLSEASI 103
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 27.3 bits (59), Expect = 7.9, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 125 TTTENADIIMVRHMKQMKNA--------AIVCNIGHFDNEIDMLDLEAYRGIKRITI--K 174
TTTE+ + RH + + + + N+ F +EI++ L+ Y G + + + +
Sbjct: 1305 TTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKY-GSQNVVLFLR 1363
Query: 175 PQTDPWVFPQTRRGIIILAERLLMNLGC--PTGHPSFVMSCSFTNQAAALHLGKPGDK 230
+ F +T + ER+ + C PT MS FT AA L+LG P K
Sbjct: 1364 QLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGK 1421
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 27.3 bits (59), Expect = 7.9, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 13/118 (11%)
Query: 125 TTTENADIIMVRHMKQMKNA--------AIVCNIGHFDNEIDMLDLEAYRGIKRITI--K 174
TTTE+ + RH + + + + N+ F +EI++ L+ Y G + + + +
Sbjct: 1086 TTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKY-GSQNVVLFLR 1144
Query: 175 PQTDPWVFPQTRRGIIILAERLLMNLGC--PTGHPSFVMSCSFTNQAAALHLGKPGDK 230
+ F +T + ER+ + C PT MS FT AA L+LG P K
Sbjct: 1145 QLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGK 1202
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,554,290
Number of Sequences: 62578
Number of extensions: 249680
Number of successful extensions: 626
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 556
Number of HSP's gapped (non-prelim): 36
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)