BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037951
(627 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 187/568 (32%), Positives = 272/568 (47%), Gaps = 60/568 (10%)
Query: 18 DLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITC--------DLRSKALS------- 62
++ L +FK ++ + +L W+ +++ C ++G+TC DL SK L+
Sbjct: 10 EIHQLISFKDVLPD--KNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVS 67
Query: 63 -----------GLLSPQIGNLSF--------LREINLMNNTIQGEIP--LEFGRLRRLET 101
LS N S L ++L N++ G + G L+
Sbjct: 68 SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 127
Query: 102 LLLSDNSL--VGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFV---SLYKLKQLALPMNN 156
L +S N+L GK+ L S L VL L N + G+ +V +LK LA+ N
Sbjct: 128 LNVSSNTLDFPGKVSGGLKLNS-LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 186
Query: 157 LTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNL 216
++G + + +LE + ++ N F IP LG L+ L I GN LSG +I
Sbjct: 187 ISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTC 243
Query: 217 SFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNA-SKLEYVEIAS 275
+ L + ++S NQ G +PP L +L+ EN F+G IP LS A L ++++
Sbjct: 244 TELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 300
Query: 276 NSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGA 335
N F+G + FG L L L NN SGE M++L L+VL L N+F G
Sbjct: 301 NHFYGAVPPFFGSCSLLESLALSSNNF-SGELP----MDTLLKMRGLKVLDLSFNEFSGE 355
Query: 336 LPHSIANLSSQLQILVLGTNQLYGSI-PSGIGNLVN-LYSLQTEENQFTGSIPKEMGKLL 393
LP S+ NLS+ L L L +N G I P+ N N L L + N FTG IP +
Sbjct: 356 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 415
Query: 394 NLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANEL 453
L L N+ SG IPS+LG+LS L ++ L N L G IP L ++ L L + N+L
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 475
Query: 454 SGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLC 513
+G IP + N ++L+ + L+ N G IP IG L+ L +SNN SG IP+ELG C
Sbjct: 476 TGEIPSGLSNCTNLNW-ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 514 SSLEEIYLAENFFNGFIP-SFFRTSRGI 540
SL + L N FNG IP + F+ S I
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAMFKQSGKI 562
Score = 180 bits (456), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 184/603 (30%), Positives = 266/603 (44%), Gaps = 72/603 (11%)
Query: 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLV 134
L+ + + N I G++ + R LE L +S N+ IP L CS L L + NKL
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 233
Query: 135 GSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSL-GQLK 193
G + +LK L + N G IPP L SL+ +SLA N F G IPD L G
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD 291
Query: 194 ELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENF 253
L L + GN+ G++PP + S L ++S N G LP L LK+ + N
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 254 FSGSIPISLSN-ASKLEYVEIASNSFFGKLSVNF-GGMKNLSYLILEYNNLGSGESDEMG 311
FSG +P SL+N ++ L ++++SN+F G + N KN + NN +G+
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK----- 406
Query: 312 FMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNL 371
+L+NCS+L L L N G +P S+ +LS +L+ L L N L G IP + + L
Sbjct: 407 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 372 YSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSG 431
+L + N TG IP + NL + N +GEIP +G L +L + L +N+ SG
Sbjct: 466 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 525
Query: 432 VIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFV------------ 479
IP+ LG+ L L++ N +GTIP +F S + +A +V
Sbjct: 526 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 585
Query: 480 ---------------------------------GSIPPRIGNLKALRCFDVSNNDLSGEI 506
G P N ++ D+S N LSG I
Sbjct: 586 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 645
Query: 507 PSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEY 565
P E+G L + L N +G IP RG+ +DLS N G+IP + AL+ L
Sbjct: 646 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 705
Query: 566 LNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIHELQLPKC--------PEHESSRG 617
++LS N+ G +P G F LCG LP+C H+ S G
Sbjct: 706 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG----YPLPRCDPSNADGYAHHQRSHG 761
Query: 618 GDL 620
L
Sbjct: 762 RRL 764
Score = 142 bits (358), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 129/388 (33%), Positives = 180/388 (46%), Gaps = 23/388 (5%)
Query: 55 DLRSKALSGLLSPQIGNLSF-LREINLMNNTIQGEIPLEFGRLRR--LETLLLSDNSLVG 111
DL SG L + NLS L ++L +N G I + + L+ L L +N G
Sbjct: 346 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 405
Query: 112 KIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSL 171
KIP LS CS L L L N L G+IP SL KL+ L L +N L G IP L + +L
Sbjct: 406 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 172 EVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHG 231
E + L N G IP L L + + N L+G IP I L L I +S N G
Sbjct: 466 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 525
Query: 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGK--LSVNFGGM 289
++P LG +L N N F+G+IP ++ S +IA+N GK + + GM
Sbjct: 526 NIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGM 580
Query: 290 KNLSY---LILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQ 346
K + +LE+ + S + + + N S++ + G + N +
Sbjct: 581 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV---------YGGHTSPTFDN-NGS 630
Query: 347 LQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFS 406
+ L + N L G IP IG++ L+ L N +GSIP E+G L L LD N
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 407 GEIPSTLGNLSSLYEIFLGDNNLSGVIP 434
G IP + L+ L EI L +NNLSG IP
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 12/155 (7%)
Query: 452 ELSGTIPGDIFNISSLSVSLDLAENHFVGSIPP--RIGNLKALRCFDVSNN--DLSGEIP 507
++G++ G F S+ SLDL+ N G + +G+ L+ +VS+N D G++
Sbjct: 85 HINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 142
Query: 508 SELGLCSSLEEIYLAENFFNGFIPSFFRTSRG---IRKVDLSRNNFFGQIPIFLEALSLE 564
L L +SLE + L+ N +G + S G ++ + +S N G + + ++LE
Sbjct: 143 GGLKL-NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS-RCVNLE 200
Query: 565 YLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCG 599
+L++S N+F +P G + + + G N+L G
Sbjct: 201 FLDVSSNNFSTGIPFLGDCSALQHLDISG-NKLSG 234
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 20/105 (19%)
Query: 520 YLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS---LEYLNLSFN--DFE 574
+L+ + NG + S F+ S + +DLSRN+ G + S L++LN+S N DF
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 575 GRLPTRGIFANA------SAISVGGCNRL-------CGGIHELQL 606
G++ + G+ N+ SA S+ G N + CG + L +
Sbjct: 139 GKV-SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 182
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 187/568 (32%), Positives = 272/568 (47%), Gaps = 60/568 (10%)
Query: 18 DLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITC--------DLRSKALS------- 62
++ L +FK ++ + +L W+ +++ C ++G+TC DL SK L+
Sbjct: 13 EIHQLISFKDVLPD--KNLLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVS 70
Query: 63 -----------GLLSPQIGNLSF--------LREINLMNNTIQGEIP--LEFGRLRRLET 101
LS N S L ++L N++ G + G L+
Sbjct: 71 SSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130
Query: 102 LLLSDNSL--VGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFV---SLYKLKQLALPMNN 156
L +S N+L GK+ L S L VL L N + G+ +V +LK LA+ N
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNS-LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK 189
Query: 157 LTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNL 216
++G + + +LE + ++ N F IP LG L+ L I GN LSG +I
Sbjct: 190 ISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTC 246
Query: 217 SFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNA-SKLEYVEIAS 275
+ L + ++S NQ G +PP L +L+ EN F+G IP LS A L ++++
Sbjct: 247 TELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303
Query: 276 NSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGA 335
N F+G + FG L L L NN SGE M++L L+VL L N+F G
Sbjct: 304 NHFYGAVPPFFGSCSLLESLALSSNNF-SGELP----MDTLLKMRGLKVLDLSFNEFSGE 358
Query: 336 LPHSIANLSSQLQILVLGTNQLYGSI-PSGIGNLVN-LYSLQTEENQFTGSIPKEMGKLL 393
LP S+ NLS+ L L L +N G I P+ N N L L + N FTG IP +
Sbjct: 359 LPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCS 418
Query: 394 NLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANEL 453
L L N+ SG IPS+LG+LS L ++ L N L G IP L ++ L L + N+L
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478
Query: 454 SGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLC 513
+G IP + N ++L+ + L+ N G IP IG L+ L +SNN SG IP+ELG C
Sbjct: 479 TGEIPSGLSNCTNLNW-ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 514 SSLEEIYLAENFFNGFIP-SFFRTSRGI 540
SL + L N FNG IP + F+ S I
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKI 565
Score = 179 bits (455), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 180/584 (30%), Positives = 261/584 (44%), Gaps = 64/584 (10%)
Query: 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLV 134
L+ + + N I G++ + R LE L +S N+ IP L CS L L + NKL
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236
Query: 135 GSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSL-GQLK 193
G + +LK L + N G IPP L SL+ +SLA N F G IPD L G
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD 294
Query: 194 ELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENF 253
L L + GN+ G++PP + S L ++S N G LP L LK+ + N
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 254 FSGSIPISLSN-ASKLEYVEIASNSFFGKLSVNF-GGMKNLSYLILEYNNLGSGESDEMG 311
FSG +P SL+N ++ L ++++SN+F G + N KN + NN +G+
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK----- 409
Query: 312 FMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNL 371
+L+NCS+L L L N G +P S+ +LS +L+ L L N L G IP + + L
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 372 YSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSG 431
+L + N TG IP + NL + N +GEIP +G L +L + L +N+ SG
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Query: 432 VIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFV------------ 479
IP+ LG+ L L++ N +GTIP +F S + +A +V
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588
Query: 480 ---------------------------------GSIPPRIGNLKALRCFDVSNNDLSGEI 506
G P N ++ D+S N LSG I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648
Query: 507 PSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEY 565
P E+G L + L N +G IP RG+ +DLS N G+IP + AL+ L
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708
Query: 566 LNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIHELQLPKC 609
++LS N+ G +P G F LCG LP+C
Sbjct: 709 IDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG----YPLPRC 748
Score = 141 bits (356), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 129/388 (33%), Positives = 180/388 (46%), Gaps = 23/388 (5%)
Query: 55 DLRSKALSGLLSPQIGNLSF-LREINLMNNTIQGEIPLEFGRLRR--LETLLLSDNSLVG 111
DL SG L + NLS L ++L +N G I + + L+ L L +N G
Sbjct: 349 DLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG 408
Query: 112 KIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSL 171
KIP LS CS L L L N L G+IP SL KL+ L L +N L G IP L + +L
Sbjct: 409 KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 172 EVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHG 231
E + L N G IP L L + + N L+G IP I L L I +S N G
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Query: 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGK--LSVNFGGM 289
++P LG +L N N F+G+IP ++ S +IA+N GK + + GM
Sbjct: 529 NIPAELG-DCRSLIWLDLNTNLFNGTIPAAMFKQSG----KIAANFIAGKRYVYIKNDGM 583
Query: 290 KNLSY---LILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQ 346
K + +LE+ + S + + + N S++ + G + N +
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV---------YGGHTSPTFDN-NGS 633
Query: 347 LQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFS 406
+ L + N L G IP IG++ L+ L N +GSIP E+G L L LD N
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 407 GEIPSTLGNLSSLYEIFLGDNNLSGVIP 434
G IP + L+ L EI L +NNLSG IP
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 13/167 (7%)
Query: 452 ELSGTIPGDIFNISSLSVSLDLAENHFVGSIPP--RIGNLKALRCFDVSNN--DLSGEIP 507
++G++ G F S+ SLDL+ N G + +G+ L+ +VS+N D G++
Sbjct: 88 HINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVS 145
Query: 508 SELGLCSSLEEIYLAENFFNGFIPSFFRTSRG---IRKVDLSRNNFFGQIPIFLEALSLE 564
L L +SLE + L+ N +G + S G ++ + +S N G + + ++LE
Sbjct: 146 GGLKL-NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS-RCVNLE 203
Query: 565 YLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIHELQLPKCPE 611
+L++S N+F +P G + + + G N+L G + C E
Sbjct: 204 FLDVSSNNFSTGIPFLGDCSALQHLDISG-NKLSGDFSR-AISTCTE 248
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 52/105 (49%), Gaps = 20/105 (19%)
Query: 520 YLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS---LEYLNLSFN--DFE 574
+L+ + NG + S F+ S + +DLSRN+ G + S L++LN+S N DF
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 575 GRLPTRGIFANA------SAISVGGCNRL-------CGGIHELQL 606
G++ + G+ N+ SA S+ G N + CG + L +
Sbjct: 142 GKV-SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 83/277 (29%), Positives = 121/277 (43%), Gaps = 35/277 (12%)
Query: 336 LPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNL 395
+P S+ANL + + G N L G IP I L L+ L +G+IP + ++ L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 396 QGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSG 455
LDF N SG +P ++ +L +L I N +SG IP S G+ +L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF----------- 176
Query: 456 TIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSS 515
S+ ++ N G IPP NL L D+S N L G+ G +
Sbjct: 177 -------------TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN 222
Query: 516 LEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFE 574
++I+LA+N F S+ + +DL N +G +P L L L LN+SFN+
Sbjct: 223 TQKIHLAKNSL-AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281
Query: 575 GRLPTRGIFA--NASAISVGGCNRLCGGIHELQLPKC 609
G +P G + SA + C LCG LP C
Sbjct: 282 GEIPQGGNLQRFDVSAYANNKC--LCGS----PLPAC 312
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 106/234 (45%), Gaps = 33/234 (14%)
Query: 154 MNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSI 213
+NNL G IPP + LT L + + G IPD L Q+K L TL N LSG++PPSI
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI 145
Query: 214 YNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEI 273
+L LV + N++ G++P S G + + N +G IP + +N + L +V++
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204
Query: 274 ASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFR 333
+ N G SV FG KN + L N+L LG
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLA---------------------FDLGK---- 239
Query: 334 GALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPK 387
LS L L L N++YG++P G+ L L+SL N G IP+
Sbjct: 240 -------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 123/272 (45%), Gaps = 21/272 (7%)
Query: 37 LNSWNDSRHFC--EWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFG 94
L+SW + C W G+ CD ++ ++ NL +++ +N IP
Sbjct: 24 LSSWLPTTDCCNRTWLGVLCDTDTQTY------RVNNL----DLSGLNLPKPYPIPSSLA 73
Query: 95 RLRRLETLLLSD-NSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALP 153
L L L + N+LVG IP ++ ++L L + + + G+IP + L L
Sbjct: 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 154 MNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKT-LGIGGNNLSGSIPPS 212
N L+G +PP + +L +L ++ GN G IPDS G +L T + I N L+G IPP+
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 213 IYNLSFLVIFSVSENQMHGSLPPSLG--LYFPNLKLFQTNENFFSGSIPISLSNASKLEY 270
NL+ L +S N + G G + L + + F G + +S L
Sbjct: 194 FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS----KNLNG 248
Query: 271 VEIASNSFFGKLSVNFGGMKNLSYLILEYNNL 302
+++ +N +G L +K L L + +NNL
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP--ANLSYCSRLTVLVLGNNK 132
L ++L NN I G +P +L+ L +L +S N+L G+IP NL R V NNK
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNL---QRFDVSAYANNK 302
Query: 133 LVGSIPF 139
+ P
Sbjct: 303 CLCGSPL 309
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
DLR+ + G L + L FL +N+ N + GEIP + G L+R + ++N + P
Sbjct: 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 74/173 (42%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
DL+S LS L S L+ LR + L +N +Q F L+ LETL ++DN L
Sbjct: 43 DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI 102
Query: 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVV 174
L L L N+L P F SL KL L+L N L LTSL+ +
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKEL 162
Query: 175 SLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSEN 227
L N + +L ELKTL + N L + +L L + + EN
Sbjct: 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 4/160 (2%)
Query: 320 SKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEE 378
+KL++L L N+ + LP I L+ L + N+L ++P G+ LVNL L+ +
Sbjct: 61 TKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDR 118
Query: 379 NQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLG 438
NQ P+ L L L G N L+SL E+ L +N L V +
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178
Query: 439 NLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHF 478
L L L++ N+L G ++ L + L L EN +
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKM-LQLQENPW 217
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 93/215 (43%), Gaps = 12/215 (5%)
Query: 251 ENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKN---LSYLI-LEYNNLGSGE 306
++ F+ +I +L S + V + ++ N +K+ + YL + Y LG +
Sbjct: 15 DDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK 74
Query: 307 SDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI- 365
++ + L N L L L GNQ + +LP+ + + + L+ LVL NQL S+P G+
Sbjct: 75 LHDISALKELTN---LTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL-QSLPDGVF 129
Query: 366 GNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424
L NL L NQ S+PK + KL NL LD N L+ L ++ L
Sbjct: 130 DKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188
Query: 425 GDNNLSGVIPSSLGNLERLAILEMFANELSGTIPG 459
N L V L L + + N T PG
Sbjct: 189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 10/145 (6%)
Query: 322 LQVLSLGGNQFRGALPHSIANLS--SQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEE 378
++ L+LGGN+ H I+ L + L L+L NQL S+P+G+ L NL L E
Sbjct: 65 VRYLALGGNKL-----HDISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVE 118
Query: 379 NQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLG 438
NQ KL NL L+ N L++L E+ L N L +
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178
Query: 439 NLERLAILEMFANELSGTIPGDIFN 463
L +L L ++ N+L ++P +F+
Sbjct: 179 KLTQLKDLRLYQNQLK-SVPDGVFD 202
Score = 35.8 bits (81), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 48/115 (41%)
Query: 72 LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNN 131
L+ L+E+ L+ N +Q F +L L L L+ N L + LT L L N
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN 167
Query: 132 KLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIP 186
+L F L +LK L L N L LTSL+ + L NP+ P
Sbjct: 168 QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 14/173 (8%)
Query: 192 LKELKTLGIGGNNLSG-SIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTN 250
L ++ L +GGN L S + NL++L++ + NQ+ SLP + NLK
Sbjct: 62 LPNVRYLALGGNKLHDISALKELTNLTYLIL---TGNQLQ-SLPNGVFDKLTNLKELVLV 117
Query: 251 ENFFSGSIPISL-SNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDE 309
EN S+P + + L Y+ +A N F + NL+ L L YN L +S
Sbjct: 118 ENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL---QSLP 173
Query: 310 MGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIP 362
G + L ++L+ L L NQ + ++P + + + LQ + L N + P
Sbjct: 174 EGVFDKL---TQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 65/146 (44%), Gaps = 6/146 (4%)
Query: 42 DSRHFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLE--FGRLRRL 99
D C EG T D + L + P+ ++ L+N+ G I + FGRL L
Sbjct: 1 DCPAMCHCEGTTVDCTGRGLKEI--PR--DIPLHTTELLLNDNELGRISSDGLFGRLPHL 56
Query: 100 ETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTG 159
L L N L G P S + L LG NK+ F+ L++LK L L N ++
Sbjct: 57 VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116
Query: 160 GIPPFLGNLTSLEVVSLAGNPFGGNI 185
+P +L SL ++LA NPF N
Sbjct: 117 VMPGSFEHLNSLTSLNLASNPFNCNC 142
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 390 GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMF 449
G+L +L L+ N +G P+ S + E+ LG+N + + L +L L ++
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 450 ANELSGTIPGDIFNISSLSVSLDLAENHF 478
N++S +PG +++SL+ SL+LA N F
Sbjct: 111 DNQISCVMPGSFEHLNSLT-SLNLASNPF 138
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 46/104 (44%), Gaps = 3/104 (2%)
Query: 350 LVLGTNQLYGSIPSG--IGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSG 407
L+L N+L G I S G L +L L+ + NQ TG P ++Q L G N
Sbjct: 34 LLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKE 92
Query: 408 EIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFAN 451
L L + L DN +S V+P S +L L L + +N
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 142/321 (44%), Gaps = 38/321 (11%)
Query: 84 TIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVS 143
+IQG +E+ L LE L L+ N + P LS +LT L +G NK+ + +
Sbjct: 58 SIQG---IEY--LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISALQ--N 108
Query: 144 LYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD--SLGQLKELKTLGIG 201
L L++L L +N++ P L NLT ++L N N+ D L L L +
Sbjct: 109 LTNLRELYLNEDNISDISP--LANLTKXYSLNLGAN---HNLSDLSPLSNXTGLNYLTVT 163
Query: 202 GNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPIS 261
+ + P I NL+ L S++ NQ+ P + +L F N + P++
Sbjct: 164 ESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLA---SLTSLHYFTAYVNQITDITPVA 218
Query: 262 LSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSK 321
N ++L ++I +N + + NLS L + +G+ +++ +N++ + +K
Sbjct: 219 --NXTRLNSLKIGNNKI-----TDLSPLANLSQL--TWLEIGT---NQISDINAVKDLTK 266
Query: 322 LQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQF 381
L+ L++G NQ S+ N SQL L L NQL IG L NL +L +N
Sbjct: 267 LKXLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHI 323
Query: 382 TGSIPKEMGKLLNLQGLDFGG 402
T P + L DF
Sbjct: 324 TDIRP--LASLSKXDSADFAN 342
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 79/294 (26%), Positives = 126/294 (42%), Gaps = 33/294 (11%)
Query: 168 LTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSEN 227
LT+LE ++L GN P L L +L L IG N ++ ++ NL+ L ++E+
Sbjct: 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNED 120
Query: 228 QMHGSLPPS--LGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVN 285
+ P + Y NL N N S LSN + L Y+ + + K
Sbjct: 121 NISDISPLANLTKXYSLNLG---ANHNLSDLS---PLSNXTGLNYLTVTESKV--KDVTP 172
Query: 286 FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSS 345
+ +L L L YN ++ ++ LA+ + L + NQ P +AN +
Sbjct: 173 IANLTDLYSLSLNYN--------QIEDISPLASLTSLHYFTAYVNQITDITP--VAN-XT 221
Query: 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTG-SIPKEMGKLLNLQGLDFGGNH 404
+L L +G N++ P + NL L L+ NQ + + K++ KL + L+ G N
Sbjct: 222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINAVKDLTKL---KXLNVGSNQ 276
Query: 405 FSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIP 458
S S L NLS L +FL +N L +G L L L + N ++ P
Sbjct: 277 ISD--ISVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 76/182 (41%), Gaps = 22/182 (12%)
Query: 280 GKLSVNFGGMKNLSYLILEYNNLGS---GESDEMGFMNSLANCSKLQVLSLGGNQFRGAL 336
G+ SV G +YL LE N+L S G DE+ + L L LGGN+ + +L
Sbjct: 18 GRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDEL---------TSLTQLYLGGNKLQ-SL 67
Query: 337 PHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEMGKLLNL 395
P+ + N + L L L TNQL S+P+G+ L L L NQ KL L
Sbjct: 68 PNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126
Query: 396 QGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSG 455
+ L N L+SL I+L DN P + L + N+ SG
Sbjct: 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG-------IRYLSEWINKHSG 179
Query: 456 TI 457
+
Sbjct: 180 VV 181
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 53/132 (40%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
DL + +L L + L+ L ++ L N +Q F +L L L LS N L
Sbjct: 34 DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN 93
Query: 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVV 174
++L L L N+L F L +LK L L N L LTSL+ +
Sbjct: 94 GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153
Query: 175 SLAGNPFGGNIP 186
L NP+ P
Sbjct: 154 WLHDNPWDCTCP 165
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 58/137 (42%), Gaps = 5/137 (3%)
Query: 325 LSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGN-LVNLYSLQTEENQFTG 383
L L N + +LP+ + + + L L LG N+L S+P+G+ N L +L L NQ
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ- 89
Query: 384 SIPKEM-GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLER 442
S+P + KL L+ L N L+ L ++ L N L V L
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 149
Query: 443 LAILEMFANELSGTIPG 459
L + + N T PG
Sbjct: 150 LQYIWLHDNPWDCTCPG 166
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 59/149 (39%), Gaps = 9/149 (6%)
Query: 398 LDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTI 457
LD N L+SL +++LG N L + L L L + N+L ++
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SL 91
Query: 458 PGDIFNISSLSVSLDLAENHFVGSIP----PRIGNLKALRCFDVSNNDLSGEIPSELGLC 513
P +F+ + L L N S+P ++ LK LR + N L
Sbjct: 92 PNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLY---QNQLKSVPDGVFDRL 147
Query: 514 SSLEEIYLAENFFNGFIPSFFRTSRGIRK 542
+SL+ I+L +N ++ P S I K
Sbjct: 148 TSLQYIWLHDNPWDCTCPGIRYLSEWINK 176
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 91/207 (43%), Gaps = 12/207 (5%)
Query: 251 ENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKN---LSYLI-LEYNNLGSGE 306
++ F+ +I +L S + V + ++ N +K+ + YL + Y LG +
Sbjct: 15 DDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK 74
Query: 307 SDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI- 365
++ + L N L L L GNQ + +LP+ + + + L+ LVL NQL S+P G+
Sbjct: 75 LHDISALKELTN---LTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQL-QSLPDGVF 129
Query: 366 GNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424
L NL L NQ S+PK + KL NL LD N L+ L ++ L
Sbjct: 130 DKLTNLTYLYLYHNQL-QSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSL 188
Query: 425 GDNNLSGVIPSSLGNLERLAILEMFAN 451
DN L V L L + + N
Sbjct: 189 NDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
Query: 322 LQVLSLGGNQFRGALPHSIANLS--SQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEE 378
++ L+LGGN+ H I+ L + L L+L NQL S+P+G+ L NL L E
Sbjct: 65 VRYLALGGNKL-----HDISALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVE 118
Query: 379 NQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLG 438
NQ KL NL L N L++L + L +N L +
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFD 178
Query: 439 NLERLAILEMFANELSGTIPGDIFN 463
L +L L + N+L ++P +F+
Sbjct: 179 KLTQLKQLSLNDNQLK-SVPDGVFD 202
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 50/118 (42%)
Query: 72 LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNN 131
L+ L+E+ L+ N +Q F +L L L L N L + LT L L NN
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNN 167
Query: 132 KLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSL 189
+L F L +LKQL+L N L LTSL + L NP+ D L
Sbjct: 168 QLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDIL 225
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 93/197 (47%), Gaps = 22/197 (11%)
Query: 273 IASNSFFGKLSVNFGGMKNLSYLI-LEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQ 331
IA+ S F G++ L+ LI LE + +++ + L N +K+ L L GN
Sbjct: 49 IATLSAFNTGVTTIEGIQYLNNLIGLEL------KDNQITDLTPLKNLTKITELELSGNP 102
Query: 332 FRGALPHSIANLSSQLQILVLGTNQLYGSIP-SGIGNLVNLYSLQTEENQFTGSIPKEMG 390
+ +IA L S ++ L L + Q+ P +G+ NL LY + NQ T P +
Sbjct: 103 LKNV--SAIAGLQS-IKTLDLTSTQITDVTPLAGLSNLQVLY---LDLNQITNISP--LA 154
Query: 391 KLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFA 450
L NLQ L G N + P L NLS L + DN +S + P L +L L + +
Sbjct: 155 GLTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKD 210
Query: 451 NELSGTIPGDIFNISSL 467
N++S P + N+S+L
Sbjct: 211 NQISDVSP--LANLSNL 225
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 69/158 (43%), Gaps = 11/158 (6%)
Query: 269 EYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLG 328
E +++ S F G+ L++L L+YN L ++ G + L ++L L L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL---QTLSAGVFDDL---TELGTLGLA 91
Query: 329 GNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPK 387
NQ +LP + + +QL L LG NQL S+PSG+ L L L+ NQ SIP
Sbjct: 92 NNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPA 148
Query: 388 -EMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424
KL NLQ L N L L I L
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 70/160 (43%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
DL+S L+ L L+ L +NL N +Q F L L TL L++N L
Sbjct: 41 DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100
Query: 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVV 174
+ ++L L LG N+L F L KLK+L L N L LT+L+ +
Sbjct: 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160
Query: 175 SLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIY 214
SL+ N + +L +L+T+ + GN S +Y
Sbjct: 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILY 200
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 121 SRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNP 180
++LT L L N+L F L +L L L N L +LT L+ + L GN
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 181 FGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYN-LSFLVIFSVSENQMHGSLP 234
+L +LK L + N L SIP ++ L+ L S+S NQ+ S+P
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVP 171
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 69/158 (43%), Gaps = 11/158 (6%)
Query: 269 EYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLG 328
E +++ S F G+ L++L L+YN L ++ G + L ++L L L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL---QTLSAGVFDDL---TELGTLGLA 91
Query: 329 GNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPK 387
NQ +LP + + +QL L LG NQL S+PSG+ L L L+ NQ SIP
Sbjct: 92 NNQL-ASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-SIPA 148
Query: 388 -EMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424
KL NLQ L N L L I L
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 71/160 (44%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
DL+S L+ L L+ L +NL N +Q F L L TL L++N L
Sbjct: 41 DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL 100
Query: 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVV 174
+ ++L L LG N+L F L KLK+L L N L LT+L+ +
Sbjct: 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160
Query: 175 SLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIY 214
SL+ N + +L +L+T+ + GN S ++Y
Sbjct: 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLY 200
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 57/136 (41%), Gaps = 3/136 (2%)
Query: 100 ETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTG 159
E L L L A ++LT L L N+L F L +L L L N L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 160 GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYN-LSF 218
+LT L+ + L GN +L +LK L + N L SIP ++ L+
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTN 156
Query: 219 LVIFSVSENQMHGSLP 234
L S+S NQ+ S+P
Sbjct: 157 LQTLSLSTNQLQ-SVP 171
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 145/348 (41%), Gaps = 79/348 (22%)
Query: 72 LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNN 131
L+ L +IN NN + PL+ L +L +L+++N + P L+ + LT L L NN
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 132 KLVGSIPFEFVS--------------------LYKLKQLALPMNNLTGGIPPFLGNLTSL 171
++ P + ++ L L+QL+ N +T P L NLT+L
Sbjct: 118 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTL 175
Query: 172 EVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH- 230
E + ++ N L +L L++L N +S P I L+ L S++ NQ+
Sbjct: 176 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD 231
Query: 231 -GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSF----------- 278
G+L NL N S P LS +KL +++ +N
Sbjct: 232 IGTLAS-----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA 284
Query: 279 FGKLSVN---------FGGMKNLSYLILEYNNLGSGE--------------SDEMGFMNS 315
L +N +KNL+YL L +NN+ ++++ ++S
Sbjct: 285 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS 344
Query: 316 LANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTN-QLYGSIP 362
LAN + + LS G NQ P +ANL+ +I LG N Q + + P
Sbjct: 345 LANLTNINWLSAGHNQISDLTP--LANLT---RITQLGLNDQAWTNAP 387
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 145/348 (41%), Gaps = 79/348 (22%)
Query: 72 LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNN 131
L+ L +IN NN + PL+ L +L +L+++N + P L+ + LT L L NN
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 132 KLVGSIPFEFVS--------------------LYKLKQLALPMNNLTGGIPPFLGNLTSL 171
++ P + ++ L L+QL+ N +T P L NLT+L
Sbjct: 118 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTL 175
Query: 172 EVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH- 230
E + ++ N L +L L++L N +S P I L+ L S++ NQ+
Sbjct: 176 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD 231
Query: 231 -GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSF----------- 278
G+L NL N S P LS +KL +++ +N
Sbjct: 232 IGTLAS-----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA 284
Query: 279 FGKLSVN---------FGGMKNLSYLILEYNNLGSG--------------ESDEMGFMNS 315
L +N +KNL+YL L +NN+ ++++ ++S
Sbjct: 285 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSS 344
Query: 316 LANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTN-QLYGSIP 362
LAN + + LS G NQ P +ANL+ +I LG N Q + + P
Sbjct: 345 LANLTNINWLSAGHNQISDLTP--LANLT---RITQLGLNDQAWTNAP 387
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 69 IGNLSFLREINLMNNTIQG-EIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVL- 126
IG+L L+E+N+ +N IQ ++P F L LE L LS N + YC+ L VL
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS------IYCTDLRVLH 175
Query: 127 ---VLGNNKLVGSIPFEFV-----SLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAG 178
+L + + P F+ +LK+LAL N L LTSL+ + L
Sbjct: 176 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 235
Query: 179 NPFGGNIP 186
NP+ + P
Sbjct: 236 NPWDCSCP 243
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 69 IGNLSFLREINLMNNTIQG-EIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVL- 126
IG+L L+E+N+ +N IQ ++P F L LE L LS N + YC+ L VL
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS------IYCTDLRVLH 173
Query: 127 ---VLGNNKLVGSIPFEFV-----SLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAG 178
+L + + P F+ +LK+LAL N L LTSL+ + L
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233
Query: 179 NPFGGNIP 186
NP+ + P
Sbjct: 234 NPWDCSCP 241
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 69 IGNLSFLREINLMNNTIQG-EIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVL- 126
IG+L L+E+N+ +N IQ ++P F L LE L LS N + YC+ L VL
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS------IYCTDLRVLH 174
Query: 127 ---VLGNNKLVGSIPFEFV-----SLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAG 178
+L + + P F+ +LK+LAL N L LTSL+ + L
Sbjct: 175 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 234
Query: 179 NPFGGNIP 186
NP+ + P
Sbjct: 235 NPWDCSCP 242
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 69 IGNLSFLREINLMNNTIQG-EIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVL- 126
IG+L L+E+N+ +N IQ ++P F L LE L LS N + YC+ L VL
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS------IYCTDLRVLH 175
Query: 127 ---VLGNNKLVGSIPFEFV-----SLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAG 178
+L + + P F+ +LK+LAL N L LTSL+ + L
Sbjct: 176 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 235
Query: 179 NPFGGNIP 186
NP+ + P
Sbjct: 236 NPWDCSCP 243
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 60/128 (46%), Gaps = 16/128 (12%)
Query: 69 IGNLSFLREINLMNNTIQG-EIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVL- 126
IG+L L+E+N+ +N IQ ++P F L LE L LS N + YC+ L VL
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS------IYCTDLRVLH 174
Query: 127 ---VLGNNKLVGSIPFEFV-----SLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAG 178
+L + + P F+ +LK+LAL N L LTSL+ + L
Sbjct: 175 QMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 234
Query: 179 NPFGGNIP 186
NP+ + P
Sbjct: 235 NPWDCSCP 242
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 66/143 (46%), Gaps = 10/143 (6%)
Query: 283 SVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIAN 342
SV G N L L N + E G +SL N L+ L LG NQ GALP + +
Sbjct: 33 SVPAGIPTNAQILYLHDNQITKLEP---GVFDSLIN---LKELYLGSNQL-GALPVGVFD 85
Query: 343 LSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFG 401
+QL +L LGTNQL +PS + LV+L L N+ T +P+ + +L +L L
Sbjct: 86 SLTQLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALD 143
Query: 402 GNHFSGEIPSTLGNLSSLYEIFL 424
N LSSL +L
Sbjct: 144 QNQLKSIPHGAFDRLSSLTHAYL 166
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
Query: 341 ANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEM-GKLLNLQGLD 399
A + + QIL L NQ+ P +L+NL L NQ G++P + L L LD
Sbjct: 36 AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLD 94
Query: 400 FGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPG 459
G N + + L L E+F+ N L+ +P + L L L + N+L G
Sbjct: 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHG 153
Query: 460 DIFNISSLS 468
+SSL+
Sbjct: 154 AFDRLSSLT 162
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 60/134 (44%), Gaps = 6/134 (4%)
Query: 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSD 106
C G T D RSK + + + N L L +N I P F L L+ L L
Sbjct: 17 CSCSGTTVDCRSKRHASVPAGIPTNAQILY---LHDNQITKLEPGVFDSLINLKELYLGS 73
Query: 107 NSLVGKIPANL-SYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFL 165
N L G +P + ++LTVL LG N+L F L LK+L + N LT +P +
Sbjct: 74 NQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI 131
Query: 166 GNLTSLEVVSLAGN 179
LT L ++L N
Sbjct: 132 ERLTHLTHLALDQN 145
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 20/188 (10%)
Query: 273 IASNSFFGKLSVNFGGMKNLSYLI-LEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQ 331
I + S FG G++ L+ LI LE + +++ + L N +K+ L L GN
Sbjct: 43 ITTLSAFGTGVTTIEGVQYLNNLIGLEL------KDNQITDLAPLKNLTKITELELSGNP 96
Query: 332 FRGALPHSIANLSSQLQILVLGTNQLYGSIP-SGIGNLVNLYSLQTEENQFTGSIPKEMG 390
+ +IA L S ++ L L + Q+ P +G+ NL LY + NQ T P +
Sbjct: 97 LKNV--SAIAGLQS-IKTLDLTSTQITDVTPLAGLSNLQVLY---LDLNQITNISP--LA 148
Query: 391 KLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFA 450
L NLQ L G S P L NLS L + DN +S + P L +L L + +
Sbjct: 149 GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKN 204
Query: 451 NELSGTIP 458
N++S P
Sbjct: 205 NQISDVSP 212
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 89/348 (25%), Positives = 144/348 (41%), Gaps = 79/348 (22%)
Query: 72 LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNN 131
L+ L +IN NN + PL+ L +L +L+++N + P L+ + LT L L NN
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 132 KLVGSIPFEFVS--------------------LYKLKQLALPMNNLTGGIPPFLGNLTSL 171
++ P + ++ L L+QL N +T P L NLT+L
Sbjct: 118 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKP--LANLTTL 175
Query: 172 EVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH- 230
E + ++ N L +L L++L N +S P I L+ L S++ NQ+
Sbjct: 176 ERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKD 231
Query: 231 -GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSF----------- 278
G+L NL N S P LS +KL +++ +N
Sbjct: 232 IGTLAS-----LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTA 284
Query: 279 FGKLSVN---------FGGMKNLSYLILEYNNLGSGE--------------SDEMGFMNS 315
L +N +KNL+YL L +NN+ ++++ ++S
Sbjct: 285 LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSS 344
Query: 316 LANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTN-QLYGSIP 362
LAN + + LS G NQ P +ANL+ +I LG N Q + + P
Sbjct: 345 LANLTNINWLSAGHNQISDLTP--LANLT---RITQLGLNDQAWTNAP 387
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 61/144 (42%), Gaps = 5/144 (3%)
Query: 43 SRHFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETL 102
SR C I C+ + GL S G S + L +N +Q F +L +L L
Sbjct: 3 SRCSCSGTEIRCNSK-----GLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKL 57
Query: 103 LLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIP 162
LS N + ++LT+L L NKL F L +LK+LAL N L
Sbjct: 58 SLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPD 117
Query: 163 PFLGNLTSLEVVSLAGNPFGGNIP 186
LTSL+ + L NP+ + P
Sbjct: 118 GIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 13/133 (9%)
Query: 257 SIPISL-SNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNS 315
S+P + S+A++LE + SN F + L+ L L N + +S G +
Sbjct: 21 SVPTGIPSSATRLE---LESNKLQSLPHGVFDKLTQLTKLSLSQNQI---QSLPDGVFDK 74
Query: 316 LANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSL 374
L +KL +L L N+ + +LP+ + + +QL+ L L TNQL S+P GI L +L +
Sbjct: 75 L---TKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKI 129
Query: 375 QTEENQFTGSIPK 387
N + S P+
Sbjct: 130 WLHTNPWDCSCPR 142
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 325 LSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTG 383
L L N+ + +LPH + + +QL L L NQ+ S+P G+ L L L EN+
Sbjct: 33 LELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ- 89
Query: 384 SIPKEM-GKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIP 434
S+P + KL L+ L N L+SL +I+L N P
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 57/135 (42%), Gaps = 2/135 (1%)
Query: 53 TCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGK 112
TCDL + LL + + L ++ L N I F L L L LS N +G
Sbjct: 279 TCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGS 337
Query: 113 IPANL-SYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSL 171
I + + +L VL L N + F+ L LK+LAL N L LTSL
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397
Query: 172 EVVSLAGNPFGGNIP 186
+ + L NP+ + P
Sbjct: 398 QKIWLHTNPWDCSCP 412
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 74/303 (24%), Positives = 129/303 (42%), Gaps = 29/303 (9%)
Query: 286 FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGA-LPHSIANLS 344
F G+ +L L L+YN E+ G N LAN L+VL+L GA L +
Sbjct: 75 FRGLSSLIILKLDYNQFLQLET---GAFNGLAN---LEVLTLTQCNLDGAVLSGNFFKPL 128
Query: 345 SQLQILVLGTNQLYGSIPSGIG-NLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGN 403
+ L++LVL N + P+ N+ + L N+ +++ L+F G
Sbjct: 129 TSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL--------LNFQGK 180
Query: 404 HFSGEIPSTLGNLSSLYEIFLGD-------NNLSGVIPSSLGNLERLAILEMFANELSGT 456
HF+ S++ L + E +LG N S GN + ++ + F + ++GT
Sbjct: 181 HFTLLRLSSI-TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGT 239
Query: 457 IPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKA--LRCFDVSNNDLSGEIPSELGLCS 514
+ +S ++ +F L+A ++ D+S + + + S +
Sbjct: 240 KIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFT 299
Query: 515 SLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP--IFLEALSLEYLNLSFND 572
LE++ LA+N N + F + K++LS+ NF G I +F LE L+LS+N
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ-NFLGSIDSRMFENLDKLEVLDLSYNH 358
Query: 573 FEG 575
Sbjct: 359 IRA 361
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 145/345 (42%), Gaps = 74/345 (21%)
Query: 72 LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNN 131
L+ L +IN NN + PL+ L +L +L+++N + P L+ + LT L L NN
Sbjct: 66 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 121
Query: 132 KLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD--SL 189
++ P + +L L +L L N ++ L LTSL+ +S FG + D L
Sbjct: 122 QITDIDPLK--NLTNLNRLELSSNTISD--ISALSGLTSLQQLS-----FGNQVTDLKPL 172
Query: 190 GQLKELKTLGIGGNNLSG-SIPPSIYNLSFLV--------------IFSVSENQMHGSLP 234
L L+ L I N +S S+ + NL L+ + ++ E ++G+
Sbjct: 173 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 232
Query: 235 PSLGLY--FPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSF-----------FGK 281
+G NL N S P LS +KL +++ +N
Sbjct: 233 KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTN 290
Query: 282 LSVN---------FGGMKNLSYLILEYNNLGSGE--------------SDEMGFMNSLAN 318
L +N +KNL+YL L +NN+ ++++ ++SLAN
Sbjct: 291 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLAN 350
Query: 319 CSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTN-QLYGSIP 362
+ + LS G NQ P +ANL+ +I LG N Q + + P
Sbjct: 351 LTNINWLSAGHNQISDLTP--LANLT---RITQLGLNDQAWTNAP 390
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 145/345 (42%), Gaps = 74/345 (21%)
Query: 72 LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNN 131
L+ L +IN NN + PL+ L +L +L+++N + P L+ + LT L L NN
Sbjct: 67 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 122
Query: 132 KLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD--SL 189
++ P + +L L +L L N ++ L LTSL+ +S FG + D L
Sbjct: 123 QITDIDPLK--NLTNLNRLELSSNTISD--ISALSGLTSLQQLS-----FGNQVTDLKPL 173
Query: 190 GQLKELKTLGIGGNNLSG-SIPPSIYNLSFLV--------------IFSVSENQMHGSLP 234
L L+ L I N +S S+ + NL L+ + ++ E ++G+
Sbjct: 174 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 233
Query: 235 PSLGLY--FPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSF-----------FGK 281
+G NL N S P LS +KL +++ +N
Sbjct: 234 KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTN 291
Query: 282 LSVN---------FGGMKNLSYLILEYNNLGSGE--------------SDEMGFMNSLAN 318
L +N +KNL+YL L +NN+ ++++ ++SLAN
Sbjct: 292 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLAN 351
Query: 319 CSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTN-QLYGSIP 362
+ + LS G NQ P +ANL+ +I LG N Q + + P
Sbjct: 352 LTNINWLSAGHNQISDLTP--LANLT---RITQLGLNDQAWTNAP 391
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 145/345 (42%), Gaps = 74/345 (21%)
Query: 72 LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNN 131
L+ L +IN NN + PL+ L +L +L+++N + P L+ + LT L L NN
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 132 KLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD--SL 189
++ P + +L L +L L N + I G LTSL+ ++ FG + D L
Sbjct: 118 QITDIDPLK--NLTNLNRLELSSNTI-SDISALSG-LTSLQQLN-----FGNQVTDLKPL 168
Query: 190 GQLKELKTLGIGGNNLSG-SIPPSIYNLSFLV--------------IFSVSENQMHGSLP 234
L L+ L I N +S S+ + NL L+ + ++ E ++G+
Sbjct: 169 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 228
Query: 235 PSLGLY--FPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSF-----------FGK 281
+G NL N S P LS +KL +++ +N
Sbjct: 229 KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTN 286
Query: 282 LSVN---------FGGMKNLSYLILEYNNLGSG--------------ESDEMGFMNSLAN 318
L +N +KNL+YL L +NN+ ++++ ++SLAN
Sbjct: 287 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDVSSLAN 346
Query: 319 CSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTN-QLYGSIP 362
+ + LS G NQ P +ANL+ +I LG N Q + + P
Sbjct: 347 LTNINWLSAGHNQISDLTP--LANLT---RITQLGLNDQAWTNAP 386
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 145/345 (42%), Gaps = 74/345 (21%)
Query: 72 LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNN 131
L+ L +IN NN + PL+ L +L +L+++N + P L+ + LT L L NN
Sbjct: 62 LNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNN 117
Query: 132 KLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD--SL 189
++ P + +L L +L L N + I G LTSL+ ++ FG + D L
Sbjct: 118 QITDIDPLK--NLTNLNRLELSSNTI-SDISALSG-LTSLQQLN-----FGNQVTDLKPL 168
Query: 190 GQLKELKTLGIGGNNLSG-SIPPSIYNLSFLV--------------IFSVSENQMHGSLP 234
L L+ L I N +S S+ + NL L+ + ++ E ++G+
Sbjct: 169 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL 228
Query: 235 PSLGLY--FPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSF-----------FGK 281
+G NL N S P LS +KL +++ +N
Sbjct: 229 KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTN 286
Query: 282 LSVN---------FGGMKNLSYLILEYNNLGSGE--------------SDEMGFMNSLAN 318
L +N +KNL+YL L +NN+ ++++ ++SLAN
Sbjct: 287 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLAN 346
Query: 319 CSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTN-QLYGSIP 362
+ + LS G NQ P +ANL+ +I LG N Q + + P
Sbjct: 347 LTNINWLSAGHNQISDLTP--LANLT---RITQLGLNDQAWTNAP 386
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 82/321 (25%), Positives = 127/321 (39%), Gaps = 37/321 (11%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
DL + L + + L E+ L N + P F L L TL L N L IP
Sbjct: 38 DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIP 96
Query: 115 ANL-SYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEV 173
+ + S LT L + NK+V + + F LY LK L + N+L L SLE
Sbjct: 97 LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156
Query: 174 VSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSL 233
++L ++L L L L + N++ S L L + +S ++
Sbjct: 157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216
Query: 234 PPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLS 293
P+ LY NL S+ I+ N + + Y+ + + L
Sbjct: 217 TPNC-LYGLNLT-----------SLSITHCNLTAVPYLAVRHLVY-------------LR 251
Query: 294 YLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLG 353
+L L YN + + E G M L +LQ + L G Q P++ L + L++L +
Sbjct: 252 FLNLSYNPISTIE----GSM--LHELLRLQEIQLVGGQLAVVEPYAFRGL-NYLRVLNVS 304
Query: 354 TNQLYG---SIPSGIGNLVNL 371
NQL S+ +GNL L
Sbjct: 305 GNQLTTLEESVFHSVGNLETL 325
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 398 LDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTI 457
LD G N + L E+ L +N +S V P + NL L L + +N L I
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LI 95
Query: 458 PGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDL 502
P +F S LD++EN V + +L L+ +V +NDL
Sbjct: 96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 3/136 (2%)
Query: 314 NSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI-GNLVNLY 372
+ A+ L+ L L N P + NL + L+ L L +N+L IP G+ L NL
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFN-LRTLGLRSNRL-KLIPLGVFTGLSNLT 107
Query: 373 SLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGV 432
L EN+ + L NL+ L+ G N L+SL ++ L NL+ +
Sbjct: 108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI 167
Query: 433 IPSSLGNLERLAILEM 448
+L +L L +L +
Sbjct: 168 PTEALSHLHGLIVLRL 183
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 83/354 (23%), Positives = 132/354 (37%), Gaps = 65/354 (18%)
Query: 113 IPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLE 172
+P + +RL L LG N++ EF S L++L L N
Sbjct: 26 VPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNEN----------------- 66
Query: 173 VVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYN-LSFLVIFSVSENQMHG 231
+VS P + L L+TLG+ N L IP ++ LS L +SEN++
Sbjct: 67 IVSAVE-------PGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVI 118
Query: 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKN 291
L +FQ N L+ +E+ N F G+ +
Sbjct: 119 LLD----------YMFQDLYN---------------LKSLEVGDNDLVYISHRAFSGLNS 153
Query: 292 LSYLILEYNNLGSGESDEMGFMNSLA--NCSKLQVLSLGGNQFRGALPHSIANLSSQLQI 349
L L LE NL S ++ + ++ L L + ++ F+ + +S +
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213
Query: 350 LVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEI 409
+ N LYG +NL SL T + L+ L+ L+ N S
Sbjct: 214 DTMTPNCLYG---------LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE 264
Query: 410 PSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFN 463
S L L L EI L L+ V P + L L +L + N+L+ T+ +F+
Sbjct: 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFH 317
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 5/117 (4%)
Query: 338 HSIANLSSQL---QILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLN 394
H A SQ Q LV N S+P+GI + L NQ T P L+N
Sbjct: 1 HHSAGCPSQCSCDQTLVNCQNIRLASVPAGIPT--DKQRLWLNNNQITKLEPGVFDHLVN 58
Query: 395 LQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFAN 451
LQ L F N + L+ L ++ L DN+L + + NL+ L + ++ N
Sbjct: 59 LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 32/113 (28%), Positives = 44/113 (38%), Gaps = 12/113 (10%)
Query: 315 SLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSL 374
+L NC +++ S+ A + + Q L L NQ+ P +LVNL L
Sbjct: 15 TLVNCQNIRLASVP------------AGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQL 62
Query: 375 QTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDN 427
N+ T KL L LD NH NL SL I+L +N
Sbjct: 63 YFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 422 IFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGS 481
++L +N ++ + P +L L L +N+L+ IP +F+ + LDL +NH + S
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDNH-LKS 95
Query: 482 IP-PRIGNLKALRCFDVSNN 500
IP NLK+L + NN
Sbjct: 96 IPRGAFDNLKSLTHIYLYNN 115
Score = 28.9 bits (63), Expect = 8.4, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 34/82 (41%)
Query: 100 ETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTG 159
+ L L++N + P + L L +NKL F L +L QL L N+L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 160 GIPPFLGNLTSLEVVSLAGNPF 181
NL SL + L NP+
Sbjct: 96 IPRGAFDNLKSLTHIYLYNNPW 117
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 99 LETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLT 158
L L L+ NSL ++PA + S L VL L +N+L S+P E S ++LK +N+
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF-FDNMV 305
Query: 159 GGIPPFLGNLTSLEVVSLAGNP 180
+P GNL +L+ + + GNP
Sbjct: 306 TTLPWEFGNLCNLQFLGVEGNP 327
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 461 IFNISSLSVSLDLAENHFVG-----SIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSS 515
IFNIS+ D ++ +P I NL LR D+S+N L+ +P+ELG C
Sbjct: 236 IFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQ 294
Query: 516 LEEIYLAEN 524
L+ Y +N
Sbjct: 295 LKYFYFFDN 303
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 322 LQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQF 381
L L L GN LP I NLS+ L++L L N+L S+P+ +G+ L +N
Sbjct: 249 LTRLYLNGNSL-TELPAEIKNLSN-LRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDNMV 305
Query: 382 TGSIPKEMGKLLNLQGLDFGGN 403
T ++P E G L NLQ L GN
Sbjct: 306 T-TLPWEFGNLCNLQFLGVEGN 326
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 395 LQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELS 454
L L GN + E+P+ + NLS+L + L N L+ +P+ LG+ +L F N ++
Sbjct: 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
Query: 455 GTIPGDIFNISSL 467
T+P + N+ +L
Sbjct: 307 -TLPWEFGNLCNL 318
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 141 FVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGN-IPDSLGQLKELKTLG 199
F+SL L L + + L+SLEV+ +AGN F N +PD +L+ L L
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 200 IGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIP 259
+ L P + +LS L + +++ NQ+ S+P + +L+ + N + S P
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 69 IGNLSFLREINLMNNTIQG-EIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVL 126
IG+L L+E+N+ +N IQ ++P F L LE L LS N + YC+ L VL
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS------IYCTDLRVL 172
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 46/178 (25%)
Query: 254 FSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLG---------- 303
F G S + L+Y++++ N +S NF G++ L +L +++NL
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 304 ---------SGESDEMGFMNSLANCSKLQVLSLGGNQFR-GALPHSIANLS--------- 344
S + F S L+VL + GN F+ LP L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 345 --------------SQLQILVLGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPK 387
S LQ+L + +NQL S+P GI L +L + N + S P+
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 1/95 (1%)
Query: 93 FGRLRRLETLLLSDNSLVGK-IPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLA 151
F L LE L ++ NS +P + LT L L +L P F SL L+ L
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 500
Query: 152 LPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIP 186
+ N L LTSL+ + L NP+ + P
Sbjct: 501 MASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%)
Query: 440 LERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSN 499
L L +L+M N DIF LDL++ P +L +L+ ++++
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 500 NDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRK 542
N L +SL++I+L N ++ P SR + K
Sbjct: 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNK 546
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 122 RLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPF 181
R+ VL L +NK + SIP + V L L++L + N L LTSL+ + L NP+
Sbjct: 422 RIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Query: 182 GGNIP 186
+ P
Sbjct: 481 DCSCP 485
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 73/184 (39%), Gaps = 35/184 (19%)
Query: 184 NIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPN 243
++P L Q + L I N +S I +LS L I +S N++ + +
Sbjct: 14 HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ----------YLD 61
Query: 244 LKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLG 303
+ +F+ N+ +LEY++++ N + ++ NL +L L +N
Sbjct: 62 ISVFKFNQ---------------ELEYLDLSHNKL---VKISCHPTVNLKHLDLSFNAF- 102
Query: 304 SGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPS 363
D + N S+L+ L L + IA+L+ +LVLG P
Sbjct: 103 ----DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPE 158
Query: 364 GIGN 367
G+ +
Sbjct: 159 GLQD 162
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 67/275 (24%), Positives = 115/275 (41%), Gaps = 11/275 (4%)
Query: 94 GRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALP 153
G +++L LS+N + ++L C L LVL +N + F SL L+ L L
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 154 MNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSL-GQLKELKTLGIGGNNLSGSIPPS 212
N L+ + L+SL ++L GNP+ SL L +L+ L +G + I
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168
Query: 213 IYN-LSFLVIFSVSENQMHGSLPPSLGLYFPNLK--LFQTNENFFSGSIPISLSNASK-L 268
+ L+FL + + + P SL N+ + ++ I + ++++ + L
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQHILLLEIFVDVTSSVECL 227
Query: 269 EYVEIASNSF-FGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSL 327
E + ++F F +LS G N + N+ + M L S L L
Sbjct: 228 ELRDTDLDTFHFSELST---GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEF 284
Query: 328 GGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIP 362
NQ + ++P I + + LQ + L TN S P
Sbjct: 285 SRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 99 LETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLT 158
+++L LS N + +L C+ L VL+L ++++ F SL L+ L L N+L+
Sbjct: 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 87
Query: 159 GGIPPFLGNLTSLEVVSLAGNPFGG-NIPDSLGQLKELKTLGIG 201
+ G L+SL+ ++L GNP+ + L L+TL IG
Sbjct: 88 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 1/104 (0%)
Query: 99 LETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLT 158
+++L LS N + +L C+ L VL+L ++++ F SL L+ L L N+L+
Sbjct: 54 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS 113
Query: 159 GGIPPFLGNLTSLEVVSLAGNPFGG-NIPDSLGQLKELKTLGIG 201
+ G L+SL+ ++L GNP+ + L L+TL IG
Sbjct: 114 SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 157
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 141 FVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGN-IPDSLGQLKELKTLG 199
F+SL L L + + L+SLEV+ +AGN F N +PD +L+ L L
Sbjct: 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 181
Query: 200 IGGNNLSGSIPPSIYNLSFLVIFSVSEN 227
+ L P + +LS L + ++S N
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 89/229 (38%), Gaps = 30/229 (13%)
Query: 254 FSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFM 313
F G S + L+Y++++ N +S NF G++ L +L +++NL + E
Sbjct: 66 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK--QMSEFSVF 122
Query: 314 NSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYS 373
SL N L L + R A + I N S L++L + N
Sbjct: 123 LSLRN---LIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSF---------------- 162
Query: 374 LQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVI 433
+EN +P +L NL LD P+ +LSSL + + NN +
Sbjct: 163 ---QEN----FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD 215
Query: 434 PSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSI 482
L L +L+ N + + ++ + S L+L +N F +
Sbjct: 216 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 389 MGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEM 448
+ L+ L+ L+ GNHF P + LSSL ++++ ++ +S + ++ L L L +
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273
Query: 449 FANELSGTIPGDIFNISSLSVSLDLAEN 476
N LS ++P D+F V L L N
Sbjct: 274 AHNNLS-SLPHDLFTPLRYLVELHLHHN 300
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 103/236 (43%), Gaps = 32/236 (13%)
Query: 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKL-- 133
R +NLM N IQ F L LE L L NS+ + + L L L +N L
Sbjct: 78 RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTV 137
Query: 134 VGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLK 193
+ S FE++S KL++L L NN IP + N V SL + LG+LK
Sbjct: 138 IPSGAFEYLS--KLRELWL-RNNPIESIPSYAFN----RVPSL--------MRLDLGELK 182
Query: 194 ELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENF 253
+L+ + G G ++NL +L + + M +L P +G L+ + + N
Sbjct: 183 KLEYISEGA--FEG-----LFNLKYLNLGMCNIKDM-PNLTPLVG-----LEELEMSGNH 229
Query: 254 FSGSIPISLSNASKLEYVEIASNSFFGKLSVN-FGGMKNLSYLILEYNNLGSGESD 308
F P S S L+ + + NS + N F G+ +L L L +NNL S D
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVM-NSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 70/166 (42%), Gaps = 26/166 (15%)
Query: 72 LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNN 131
LS LRE+ L NN I+ F R+ L L L G++ L Y S
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDL------GEL-KKLEYISE--------- 189
Query: 132 KLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQ 191
G+ F L+ LK L L M N+ P L L LE + ++GN F P S
Sbjct: 190 ---GA----FEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHG 240
Query: 192 LKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSL 237
L LK L + + +S + L+ LV +++ N + SLP L
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL-SSLPHDL 285
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 141 FVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGN-IPDSLGQLKELKTLG 199
F+SL L L + + L+SLEV+ +AGN F N +PD +L+ L L
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476
Query: 200 IGGNNLSGSIPPSIYNLSFLVIFSVSEN 227
+ L P + +LS L + ++S N
Sbjct: 477 LSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 69 IGNLSFLREINLMNNTIQG-EIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVL 126
IG+L L+E+N+ +N IQ ++P F L LE L LS N + YC+ L VL
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS------IYCTDLRVL 172
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 103/249 (41%), Gaps = 17/249 (6%)
Query: 241 FPNLKLFQTNENFFS---GSIPISLSNASKLEYVEIASN--SFFGKLSVNFGGMKNLSYL 295
FP LKL F+ G S + LE+++++ N SF G S + G +L YL
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 296 ILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTN 355
L +N + + S+ +G +L+ L + + S+ S ++ L +
Sbjct: 379 DLSFNGVITMSSNFLGL-------EQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDIS 429
Query: 356 QLYGSIP-SGIGN-LVNLYSLQTEENQFTGS-IPKEMGKLLNLQGLDFGGNHFSGEIPST 412
+ + +GI N L +L L+ N F + +P +L NL LD P+
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 413 LGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLD 472
+LSSL + + NN + L L +L+ N + + ++ + S L+
Sbjct: 490 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 549
Query: 473 LAENHFVGS 481
L +N F +
Sbjct: 550 LTQNDFACT 558
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 461 IFN-ISSLSVSLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSELGLCSSLEE 518
IFN +SSL V L +A N F + P I L+ L D+S L P+ SSL+
Sbjct: 440 IFNGLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498
Query: 519 IYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL--SLEYLNLSFNDF 573
+ ++ N F ++ ++ +D S N+ L+ SL +LNL+ NDF
Sbjct: 499 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 141 FVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGN-IPDSLGQLKELKTLG 199
F+SL L L + + L+SLEV+ +AGN F N +PD +L+ L L
Sbjct: 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD 500
Query: 200 IGGNNLSGSIPPSIYNLSFLVIFSVSEN 227
+ L P + +LS L + ++S N
Sbjct: 501 LSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 69 IGNLSFLREINLMNNTIQG-EIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVL 126
IG+L L+E+N+ +N IQ ++P F L LE L LS N + YC+ L VL
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS------IYCTDLRVL 196
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 461 IFN-ISSLSVSLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSELGLCSSLEE 518
IFN +SSL V L +A N F + P I L+ L D+S L P+ SSL+
Sbjct: 464 IFNGLSSLEV-LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522
Query: 519 IYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL--SLEYLNLSFNDF 573
+ ++ N F ++ ++ +D S N+ L+ SL +LNL+ NDF
Sbjct: 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 103/249 (41%), Gaps = 17/249 (6%)
Query: 241 FPNLKLFQTNENFFS---GSIPISLSNASKLEYVEIASN--SFFGKLSVNFGGMKNLSYL 295
FP LKL F+ G S + LE+++++ N SF G S + G +L YL
Sbjct: 343 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYL 402
Query: 296 ILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTN 355
L +N + + S+ +G +L+ L + + S+ S ++ L +
Sbjct: 403 DLSFNGVITMSSNFLGL-------EQLEHLDFQHSNLKQMSEFSV--FLSLRNLIYLDIS 453
Query: 356 QLYGSIP-SGIGN-LVNLYSLQTEENQFTGS-IPKEMGKLLNLQGLDFGGNHFSGEIPST 412
+ + +GI N L +L L+ N F + +P +L NL LD P+
Sbjct: 454 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513
Query: 413 LGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLD 472
+LSSL + + NN + L L +L+ N + + ++ + S L+
Sbjct: 514 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN 573
Query: 473 LAENHFVGS 481
L +N F +
Sbjct: 574 LTQNDFACT 582
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 44/101 (43%), Gaps = 7/101 (6%)
Query: 258 IPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLA 317
+P LSN L +++++N + +F M L LIL YN L + S
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKS-- 103
Query: 318 NCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLY 358
L++LSL GN +P N S L L +G N LY
Sbjct: 104 ----LRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPLY 139
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 49/119 (41%), Gaps = 5/119 (4%)
Query: 113 IPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLE 172
+P LS LT++ L NN++ F ++ +L L L N L P L SL
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 173 VVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHG 231
++SL GN + L L L IG N L N+ +L + SE + G
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC-----NMQWLSDWVKSEYKEPG 159
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 421 EIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVG 480
E++L D N ++P L N + L ++++ N +S N++ L ++L L+ N +
Sbjct: 35 ELYL-DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL-LTLILSYNR-LR 91
Query: 481 SIPPRIGN-LKALRCFDVSNNDLS 503
IPPR + LK+LR + ND+S
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDIS 115
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 75/173 (43%), Gaps = 35/173 (20%)
Query: 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPA-NLSYCSRLTVLVLGNNKL- 133
R +NL N+IQ F LR LE L LS N LV KI + L L L +N+L
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKN-LVRKIEVGAFNGLPSLNTLELFDNRLT 96
Query: 134 -VGSIPFEFVSLYKLKQLALPMNNLTGGIPPF------------LGNLTSLEVVSLAGNP 180
V + FE++S KL++L L NN IP + LG L LE +S A
Sbjct: 97 TVPTQAFEYLS--KLRELWL-RNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAA-- 151
Query: 181 FGG------------NIPD--SLGQLKELKTLGIGGNNLSGSIPPSIYNLSFL 219
F G N+ D +L L L+ L + GN L P S L+ L
Sbjct: 152 FEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSL 204
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 75/171 (43%), Gaps = 25/171 (14%)
Query: 72 LSFLREINLMNNTIQG-------EIP----LEFGRLRRLETLLLSDNSLVGKIPANLSYC 120
LS LRE+ L NN I+ +P L+ G L+RLE +S+ + G + NL Y
Sbjct: 106 LSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLE--YISEAAFEGLV--NLRY- 160
Query: 121 SRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNP 180
L LG L IP +L +L++L L N L P LTSL + L
Sbjct: 161 -----LNLGMCNL-KDIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQ 213
Query: 181 FGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYN-LSFLVIFSVSENQMH 230
++ LK L+ L + NNL S+P ++ L L ++ N H
Sbjct: 214 VATIERNAFDDLKSLEELNLSHNNLM-SLPHDLFTPLHRLERVHLNHNPWH 263
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
Query: 104 LSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPP 163
LS N L G + L ++ VL L NN+++ SIP + L L++L + N L
Sbjct: 435 LSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDG 491
Query: 164 FLGNLTSLEVVSLAGNPFGGNIPDSLGQLKEL--KTLGIGGNNLSGSIPP 211
LTSL+ + L NP+ P + L E K G+ N+ +GS+ P
Sbjct: 492 VFDRLTSLQYIWLHDNPWDCTCP-GIRYLSEWINKHSGVVRNS-AGSVAP 539
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 13/119 (10%)
Query: 477 HFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRT 536
H +PPR KAL +S N +S ++ S L + L+ N F
Sbjct: 45 HVPKDLPPRT---KAL---SLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF 98
Query: 537 SRGIRKVDLSRNNF--FGQIPIFLEALSLEYLNLSFNDFEGRLPTRGIFANASAISVGG 593
++ + +D+S N P+ SL +L+LSFNDF+ LP F N + ++ G
Sbjct: 99 NQDLEYLDVSHNRLQNISCCPM----ASLRHLDLSFNDFDV-LPVCKEFGNLTKLTFLG 152
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 11/221 (4%)
Query: 243 NLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNL 302
N +L +EN S + LE ++++ N F G+ NL+ L L N L
Sbjct: 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124
Query: 303 GSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIP 362
+ + ++ SKL+ L L N ++P N L+ L LG + I
Sbjct: 125 TTIPNGAFVYL------SKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYIS 177
Query: 363 SG-IGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYE 421
G L NL L IP + L+ L LD GNH S P + L L +
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235
Query: 422 IFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF 462
+++ + + + ++ NL+ L + + N L+ +P D+F
Sbjct: 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLF 275
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 89/196 (45%), Gaps = 13/196 (6%)
Query: 286 FGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSS 345
F +++L L L N++ + E+G N LAN L L L N+ +P+ S
Sbjct: 84 FKHLRHLEILQLSRNHI---RTIEIGAFNGLAN---LNTLELFDNRL-TTIPNGAFVYLS 136
Query: 346 QLQILVLGTNQLYGSIPSGIGNLV-NLYSLQTEENQFTGSIPK-EMGKLLNLQGLDFGGN 403
+L+ L L N + SIPS N + +L L E + I + L NL+ L+
Sbjct: 137 KLKELWLRNNPI-ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195
Query: 404 HFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFN 463
+ EIP+ L L L E+ L N+LS + P S L L L M +++ N
Sbjct: 196 NLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDN 253
Query: 464 ISSLSVSLDLAENHFV 479
+ SL V ++LA N+
Sbjct: 254 LQSL-VEINLAHNNLT 268
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 65/146 (44%), Gaps = 2/146 (1%)
Query: 94 GRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALP 153
G +++L LS+N + ++L C L LVL +N + F SL L+ L L
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 154 MNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSL-GQLKELKTLGIGGNNLSGSIPPS 212
N L+ + L+SL ++L GNP+ SL L +L+ L +G + I
Sbjct: 83 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 142
Query: 213 IYN-LSFLVIFSVSENQMHGSLPPSL 237
+ L+FL + + + P SL
Sbjct: 143 DFAGLTFLEELEIDASDLQSYEPKSL 168
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 75/173 (43%), Gaps = 35/173 (20%)
Query: 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPA-NLSYCSRLTVLVLGNNKL- 133
R +NL N+IQ F LR LE L LS N LV KI + L L L +N+L
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKN-LVRKIEVGAFNGLPSLNTLELFDNRLT 96
Query: 134 -VGSIPFEFVSLYKLKQLALPMNNLTGGIPPF------------LGNLTSLEVVSLAGNP 180
V + FE++S KL++L L NN IP + LG L LE +S A
Sbjct: 97 TVPTQAFEYLS--KLRELWL-RNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAA-- 151
Query: 181 FGG------------NIPD--SLGQLKELKTLGIGGNNLSGSIPPSIYNLSFL 219
F G N+ D +L L L+ L + GN L P S L+ L
Sbjct: 152 FEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSL 204
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 75/171 (43%), Gaps = 25/171 (14%)
Query: 72 LSFLREINLMNNTIQG-------EIP----LEFGRLRRLETLLLSDNSLVGKIPANLSYC 120
LS LRE+ L NN I+ +P L+ G L+RLE +S+ + G + NL Y
Sbjct: 106 LSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLE--YISEAAFEGLV--NLRY- 160
Query: 121 SRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNP 180
L LG L IP +L +L++L L N L P LTSL + L
Sbjct: 161 -----LNLGMCNL-KDIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQ 213
Query: 181 FGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYN-LSFLVIFSVSENQMH 230
++ LK L+ L + NNL S+P ++ L L ++ N H
Sbjct: 214 VATIERNAFDDLKSLEELNLSHNNLM-SLPHDLFTPLHRLERVHLNHNPWH 263
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 40/88 (45%)
Query: 99 LETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLT 158
++T LS + + + + S+ + L L L N++ F L LK+LAL N L
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK 336
Query: 159 GGIPPFLGNLTSLEVVSLAGNPFGGNIP 186
LTSL+ + L NP+ + P
Sbjct: 337 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 364
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 74/201 (36%), Gaps = 57/201 (28%)
Query: 266 SKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVL 325
+ + YV+++ NS +F +++L +L +E G L
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG---------------------L 68
Query: 326 SLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSI 385
+ N FRG S L IL L NQ LQ E F G
Sbjct: 69 VIRNNTFRGL---------SSLIILKLDYNQF----------------LQLETGAFNGLA 103
Query: 386 PKEMGKL--LNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLG-NLER 442
E+ L NL G GN F L+SL + L DNN+ + P+S N+ R
Sbjct: 104 NLEVLTLTQCNLDGAVLSGNFFKP--------LTSLEMLVLRDNNIKKIQPASFFLNMRR 155
Query: 443 LAILEMFANELSGTIPGDIFN 463
+L++ N++ D+ N
Sbjct: 156 FHVLDLTFNKVKSICEEDLLN 176
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 145/559 (25%), Positives = 227/559 (40%), Gaps = 79/559 (14%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
+L+ LS L + L E++LM+N+IQ F + + L TL LS N L
Sbjct: 84 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 143
Query: 115 ANLSYCSRLTVLVLGNNKL--VGSIPFEFVSLYKLKQLALPMNNLTGGIP---------- 162
L L+L NNK+ + S + + LK+L L N + P
Sbjct: 144 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 203
Query: 163 -PFLGNL----------------TSLEVVSLAGNPFGGNIPDSLGQLK--ELKTLGIGGN 203
FL N+ TS+ +SL+ + + LK L L + N
Sbjct: 204 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 263
Query: 204 NLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSL-GLY---FPNLKLFQTNENFFSGSIP 259
NL+ S L L F + N + SL GL+ + NLK T ++ S+P
Sbjct: 264 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 323
Query: 260 ----ISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNS 315
S LE++ + N G S F G+ NL YL L N+ S + S
Sbjct: 324 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVS 382
Query: 316 LANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQ----LYGSIPSGIGNLVNL 371
LA+ S L +L+L N+ + + L L++L LG N+ L G G+ N+ +
Sbjct: 383 LAH-SPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENIFEI 440
Query: 372 Y-----SLQTEENQF--TGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424
Y LQ N F S+ + M + + L+ +D PS L +L + L
Sbjct: 441 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS--------PSPFQPLRNLTILDL 492
Query: 425 GDNNLSGVIPSSLGNLERLAILEMFANELSGTIP-----GDIFNISSLS--VSLDLAENH 477
+NN++ + L LE+L IL++ N L+ G I+ + LS L+L N
Sbjct: 493 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 552
Query: 478 FVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNG-----FIP 531
F IP + +L L+ D+ N+L+ S SL+ + L +N F P
Sbjct: 553 F-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 611
Query: 532 SFFRTSRGIRKVDLSRNNF 550
+F R + ++D+ N F
Sbjct: 612 AF----RNLTELDMRFNPF 626
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Query: 443 LAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDL 502
+ +L + N+L +P F S SLD+ N P L L+ ++ +N+L
Sbjct: 32 ITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 90
Query: 503 SGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRN 548
S C++L E++L N + F + + +DLS N
Sbjct: 91 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 136
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 145/559 (25%), Positives = 227/559 (40%), Gaps = 79/559 (14%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
+L+ LS L + L E++LM+N+IQ F + + L TL LS N L
Sbjct: 79 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 138
Query: 115 ANLSYCSRLTVLVLGNNKL--VGSIPFEFVSLYKLKQLALPMNNLTGGIP---------- 162
L L+L NNK+ + S + + LK+L L N + P
Sbjct: 139 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 198
Query: 163 -PFLGNL----------------TSLEVVSLAGNPFGGNIPDSLGQLK--ELKTLGIGGN 203
FL N+ TS+ +SL+ + + LK L L + N
Sbjct: 199 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258
Query: 204 NLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSL-GLY---FPNLKLFQTNENFFSGSIP 259
NL+ S L L F + N + SL GL+ + NLK T ++ S+P
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318
Query: 260 ----ISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNS 315
S LE++ + N G S F G+ NL YL L N+ S + S
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVS 377
Query: 316 LANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQ----LYGSIPSGIGNLVNL 371
LA+ S L +L+L N+ + + L L++L LG N+ L G G+ N+ +
Sbjct: 378 LAH-SPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENIFEI 435
Query: 372 Y-----SLQTEENQF--TGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424
Y LQ N F S+ + M + + L+ +D PS L +L + L
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS--------PSPFQPLRNLTILDL 487
Query: 425 GDNNLSGVIPSSLGNLERLAILEMFANELSGTIP-----GDIFNISSLS--VSLDLAENH 477
+NN++ + L LE+L IL++ N L+ G I+ + LS L+L N
Sbjct: 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547
Query: 478 FVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNG-----FIP 531
F IP + +L L+ D+ N+L+ S SL+ + L +N F P
Sbjct: 548 F-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 606
Query: 532 SFFRTSRGIRKVDLSRNNF 550
+F R + ++D+ N F
Sbjct: 607 AF----RNLTELDMRFNPF 621
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Query: 443 LAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDL 502
+ +L + N+L +P F S SLD+ N P L L+ ++ +N+L
Sbjct: 27 ITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 85
Query: 503 SGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRN 548
S C++L E++L N + F + + +DLS N
Sbjct: 86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 145/559 (25%), Positives = 227/559 (40%), Gaps = 79/559 (14%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
+L+ LS L + L E++LM+N+IQ F + + L TL LS N L
Sbjct: 89 NLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKL 148
Query: 115 ANLSYCSRLTVLVLGNNKL--VGSIPFEFVSLYKLKQLALPMNNLTGGIP---------- 162
L L+L NNK+ + S + + LK+L L N + P
Sbjct: 149 GTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLF 208
Query: 163 -PFLGNL----------------TSLEVVSLAGNPFGGNIPDSLGQLK--ELKTLGIGGN 203
FL N+ TS+ +SL+ + + LK L L + N
Sbjct: 209 GLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 268
Query: 204 NLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSL-GLY---FPNLKLFQTNENFFSGSIP 259
NL+ S L L F + N + SL GL+ + NLK T ++ S+P
Sbjct: 269 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 328
Query: 260 ----ISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNS 315
S LE++ + N G S F G+ NL YL L N+ S + S
Sbjct: 329 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVS 387
Query: 316 LANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQ----LYGSIPSGIGNLVNL 371
LA+ S L +L+L N+ + + L L++L LG N+ L G G+ N+ +
Sbjct: 388 LAH-SPLHILNLTKNKISKIESDAFSWLG-HLEVLDLGLNEIGQELTGQEWRGLENIFEI 445
Query: 372 Y-----SLQTEENQF--TGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424
Y LQ N F S+ + M + + L+ +D PS L +L + L
Sbjct: 446 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS--------PSPFQPLRNLTILDL 497
Query: 425 GDNNLSGVIPSSLGNLERLAILEMFANELSGTIP-----GDIFNISSLS--VSLDLAENH 477
+NN++ + L LE+L IL++ N L+ G I+ + LS L+L N
Sbjct: 498 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 557
Query: 478 FVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNG-----FIP 531
F IP + +L L+ D+ N+L+ S SL+ + L +N F P
Sbjct: 558 F-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGP 616
Query: 532 SFFRTSRGIRKVDLSRNNF 550
+F R + ++D+ N F
Sbjct: 617 AF----RNLTELDMRFNPF 631
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 1/106 (0%)
Query: 443 LAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDL 502
+ +L + N+L +P F S SLD+ N P L L+ ++ +N+L
Sbjct: 37 ITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL 95
Query: 503 SGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRN 548
S C++L E++L N + F + + +DLS N
Sbjct: 96 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 141
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 119/315 (37%), Gaps = 68/315 (21%)
Query: 44 RHFCEWEGITC-DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETL 102
R C + C DL + + L P L +L NN I +F L+ L TL
Sbjct: 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALL------DLQNNKITEIKDGDFKNLKNLHTL 81
Query: 103 LLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIP 162
+L +N + P + +L L L N+L +P + L++L + N +T
Sbjct: 82 ILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMPKT--LQELRVHENEITKVRK 138
Query: 163 PFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIF 222
L + VV L NP LK+ GI G + LS++ I
Sbjct: 139 SVFNGLNQMIVVELGTNP--------------LKSSGIENGAFQG-----MKKLSYIRIA 179
Query: 223 SVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKL 282
+ + LPPSL E G +K+ V+ AS
Sbjct: 180 DTNITTIPQGLPPSL------------TELHLDG---------NKITKVDAAS------- 211
Query: 283 SVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIAN 342
G+ NL+ L L +N++ + ++ SLAN L+ L L N+ +P +A+
Sbjct: 212 ---LKGLNNLAKLGLSFNSISAVDN------GSLANTPHLRELHLNNNKLV-KVPGGLAD 261
Query: 343 LSSQLQILVLGTNQL 357
+Q++ L N +
Sbjct: 262 -HKYIQVVYLHNNNI 275
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 359 GSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSS 418
S+P+GI + L +NQ T P +L L LD N + L+
Sbjct: 30 ASVPTGIPTTTQVLYLY--DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 87
Query: 419 LYEIFLGDNNLSGVIPSSLGNLERLAILEMFAN 451
L ++ L DN L + + NL+ L + + N
Sbjct: 88 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 120
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 36/82 (43%)
Query: 100 ETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTG 159
+ L L DN + P ++LT L L NN+L F L +L QL+L N L
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 160 GIPPFLGNLTSLEVVSLAGNPF 181
NL SL + L NP+
Sbjct: 101 IPRGAFDNLKSLTHIWLLNNPW 122
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 31/85 (36%)
Query: 343 LSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGG 402
+ + Q+L L NQ+ P L L L + NQ T KL L L
Sbjct: 36 IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 95
Query: 403 NHFSGEIPSTLGNLSSLYEIFLGDN 427
N NL SL I+L +N
Sbjct: 96 NQLKSIPRGAFDNLKSLTHIWLLNN 120
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 74/315 (23%), Positives = 119/315 (37%), Gaps = 68/315 (21%)
Query: 44 RHFCEWEGITC-DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETL 102
R C + C DL + + L P L +L NN I +F L+ L TL
Sbjct: 28 RCQCHLRVVQCSDLGLEKVPKDLPPDTALL------DLQNNKITEIKDGDFKNLKNLHTL 81
Query: 103 LLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIP 162
+L +N + P + +L L L N+L +P + L++L + N +T
Sbjct: 82 ILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKMPK--TLQELRVHENEITKVRK 138
Query: 163 PFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIF 222
L + VV L NP LK+ GI G + LS++ I
Sbjct: 139 SVFNGLNQMIVVELGTNP--------------LKSSGIENGAFQG-----MKKLSYIRIA 179
Query: 223 SVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKL 282
+ + LPPSL E G +K+ V+ AS
Sbjct: 180 DTNITTIPQGLPPSL------------TELHLDG---------NKITKVDAAS------- 211
Query: 283 SVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIAN 342
G+ NL+ L L +N++ + ++ SLAN L+ L L N+ +P +A+
Sbjct: 212 ---LKGLNNLAKLGLSFNSISAVDN------GSLANTPHLRELHLNNNKLV-KVPGGLAD 261
Query: 343 LSSQLQILVLGTNQL 357
+Q++ L N +
Sbjct: 262 -HKYIQVVYLHNNNI 275
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
Query: 443 LAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDL 502
+ +L + N+L P + S L++ LD N P L L+ ++ +N+L
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAI-LDAGFNSISKLEPELCQILPLLKVLNLQHNEL 85
Query: 503 SGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRN 548
S C++L E+ L N + + F+ + + K+DLS N
Sbjct: 86 SQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 110/293 (37%), Gaps = 21/293 (7%)
Query: 184 NIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPN 243
+IPD L + L + N L P + S L I N + L P L P
Sbjct: 18 HIPDDLP--SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSI-SKLEPELCQILPL 74
Query: 244 LKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLG 303
LK+ N S + + L +++ SNS S F KNL L L +N L
Sbjct: 75 LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Query: 304 SGE--SDEMGFMNSLANCSKLQVLSLGGN--QFRGALPHSIANLSSQLQILVLGTNQLYG 359
S + + +K ++L+L +F G +S L+ L L +N L
Sbjct: 135 STKLGTGVQLENLQELLLAKNKILALRSEELEFLG---------NSSLRKLDLSSNPLKE 185
Query: 360 SIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLL---NLQGLDFGGNHFSGEIPSTLGNL 416
P + L++L Q + +++ L ++Q L N ST L
Sbjct: 186 FSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGL 245
Query: 417 --SSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSL 467
++L ++ L NNL V S L L L + N + P + +S+L
Sbjct: 246 KWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNL 298
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
Query: 359 GSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSS 418
S+P+GI + L +NQ T P +L L LD N + L+
Sbjct: 22 ASVPTGIPTTTQVLYLY--DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ 79
Query: 419 LYEIFLGDNNLSGVIPSSLGNLERLAILEMFAN 451
L ++ L DN L + + NL+ L + + N
Sbjct: 80 LTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 36/82 (43%)
Query: 100 ETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTG 159
+ L L DN + P ++LT L L NN+L F L +L QL+L N L
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 160 GIPPFLGNLTSLEVVSLAGNPF 181
NL SL + L NP+
Sbjct: 93 IPRGAFDNLKSLTHIWLLNNPW 114
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 24/85 (28%), Positives = 31/85 (36%)
Query: 343 LSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGG 402
+ + Q+L L NQ+ P L L L + NQ T KL L L
Sbjct: 28 IPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87
Query: 403 NHFSGEIPSTLGNLSSLYEIFLGDN 427
N NL SL I+L +N
Sbjct: 88 NQLKSIPRGAFDNLKSLTHIWLLNN 112
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
DL++ +S L L L + L+NN I F LR+L+ L +S N LV +IP
Sbjct: 60 DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIP 118
Query: 115 ANLSYCSRLTVLVLGNNKL 133
NL S L L + +N++
Sbjct: 119 PNLP--SSLVELRIHDNRI 135
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 60/259 (23%), Positives = 105/259 (40%), Gaps = 29/259 (11%)
Query: 232 SLPPSLGLYFP-----NLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNF 286
SLPP+ P +L++ Q ++ ++P +S + L +++ +N +F
Sbjct: 18 SLPPTYSAMCPFGCHCHLRVVQCSD-LGLKAVPKEISPDTTL--LDLQNNDISELRKDDF 74
Query: 287 GGMKNLSYLILEYNNLGSGESDEMGFMNSLANC---------------SKLQVLSLGGNQ 331
G+++L L+L N + + L S L L + N+
Sbjct: 75 KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNR 134
Query: 332 FRGALPHSIANLSSQLQILVLGTNQLYGS-IPSGIGNLVNLYSLQTEENQFTGSIPKEMG 390
R +P + + + + +G N L S G + + L L+ E + TG IPK++
Sbjct: 135 IR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDLP 192
Query: 391 KLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFA 450
+ LN LD N L S LY + LG N + + SL L L L +
Sbjct: 193 ETLNELHLDH--NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250
Query: 451 NELSGTIPGDIFNISSLSV 469
N+LS +P + ++ L V
Sbjct: 251 NKLS-RVPAGLPDLKLLQV 268
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.7 bits (73), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 439 NLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVS 498
NL+R + ++ ++ GT+P + +LDL+ N + S+P L AL DVS
Sbjct: 62 NLDRCELTKL---QVDGTLP--------VLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVS 109
Query: 499 NNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNF 550
N L+ L L+E+YL N P + + K+ L+ NN
Sbjct: 110 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 161
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 439 NLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVS 498
NL+R + ++ ++ GT+P + +LDL+ N + S+P L AL DVS
Sbjct: 61 NLDRCELTKL---QVDGTLP--------VLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVS 108
Query: 499 NNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNF 550
N L+ L L+E+YL N P + + K+ L+ NN
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 32.3 bits (72), Expect = 0.72, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 36/82 (43%)
Query: 100 ETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTG 159
+ L L DN + P ++LT L L NN+L F L +L QL+L N L
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 160 GIPPFLGNLTSLEVVSLAGNPF 181
NL SL + L NP+
Sbjct: 93 IPRGAFDNLRSLTHIWLLNNPW 114
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 68/161 (42%), Gaps = 10/161 (6%)
Query: 47 CEWEGITCDLRSKALSGLLS--PQIGNLSFLREINLMNNTIQG-EIPLEFGRLRRLETLL 103
C EG T D ++ L+ + PQ + E+ L NN E F +L +L +
Sbjct: 9 CRCEGTTVDCSNQKLNKIPEHIPQ-----YTAELRLNNNEFTVLEATGIFKKLPQLRKIN 63
Query: 104 LSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTG-GIP 162
S+N + S + ++L +N+L F L LK L L N +T G
Sbjct: 64 FSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGND 123
Query: 163 PFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGN 203
F+G L+S+ ++SL N P + L L TL + N
Sbjct: 124 SFIG-LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 102/430 (23%), Positives = 157/430 (36%), Gaps = 74/430 (17%)
Query: 192 LKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNE 251
L+ L++L +G N++S P + L + N +H + + E
Sbjct: 125 LENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAIH----------------YISRE 168
Query: 252 NFFSGSIPISLS---NASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNN------- 301
+ S I+LS N + ++ +E+ + S+NFGG NLS + N
Sbjct: 169 DMRSLEQAINLSLNFNGNNVKGIELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLW 228
Query: 302 LGSGE--SDEMGFMNSLANCSKLQVLSLGGNQFR-GALPHSIANLSSQLQILVLGTNQLY 358
LG+ E DE L ++ V SL + R + + +QLQ L L L
Sbjct: 229 LGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLK 288
Query: 359 GSIPSGIGNLVNLYSLQTEENQFT-------------------GSIPK------EMGKLL 393
G +PSG+ L L L N F G++ K + KL
Sbjct: 289 G-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLG 347
Query: 394 NLQGLDFGGNHFSGEIPST--LGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFAN 451
NLQ LD N + L NLS L + L N G+ + +L +L++
Sbjct: 348 NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFT 407
Query: 452 ELSGTIPGDIF-NISSLSVS------LDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSG 504
L P F N+ L V LD + H + +P LR ++ N
Sbjct: 408 RLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLP-------VLRHLNLKGNHFQD 460
Query: 505 EIPSELGLCS---SLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL 561
++ L SLE + L+ F + + VDLS N+ L L
Sbjct: 461 GTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHL 520
Query: 562 SLEYLNLSFN 571
YLNL+ N
Sbjct: 521 KGIYLNLAAN 530
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 174 VSLAGNPFGGNIPDSLGQLKELKTLGIG 201
+SLAG G +PD++GQL ELK L G
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFG 355
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 439 NLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVS 498
NL+R + ++ ++ GT+P + +LDL+ N + S+P L AL DVS
Sbjct: 61 NLDRAELTKL---QVDGTLP--------VLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVS 108
Query: 499 NNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNF 550
N L+ L L+E+YL N P + + K+ L+ NN
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 439 NLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVS 498
NL+R + ++ ++ GT+P + +LDL+ N + S+P L AL DVS
Sbjct: 61 NLDRAELTKL---QVDGTLP--------VLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVS 108
Query: 499 NNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNF 550
N L+ L L+E+YL N P + + K+ L+ NN
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 439 NLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVS 498
NL+R + ++ ++ GT+P + +LDL+ N + S+P L AL DVS
Sbjct: 61 NLDRAELTKL---QVDGTLP--------VLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVS 108
Query: 499 NNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNF 550
N L+ L L+E+YL N P + + K+ L+ NN
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 81/206 (39%), Gaps = 39/206 (18%)
Query: 261 SLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNN----LGSGESDEMGFMNSL 316
S + L + + SN+ G + F G+ L L L N + +G +++L
Sbjct: 50 SFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTL 109
Query: 317 ANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQT 376
+ + + LG FRG + LQ L L N NL +L
Sbjct: 110 -HLDRCGLQELGPGLFRGL---------AALQYLYLQDN--------------NLQAL-- 143
Query: 377 EENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSS 436
+N F +++G NL L GN L SL + L N+++ V P +
Sbjct: 144 PDNTF-----RDLG---NLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHA 195
Query: 437 LGNLERLAILEMFANELSGTIPGDIF 462
+L RL L +FAN LS +P ++
Sbjct: 196 FRDLGRLMTLYLFANNLS-MLPAEVL 220
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 417 SSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAEN 476
+S IFL N +S V +S + L IL + +N L+G I F +L LDL++N
Sbjct: 31 ASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAG-IDAAAFTGLTLLEQLDLSDN 89
Query: 477 HFVGSIPPR----IGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPS 532
+ + P +G+L L +L P ++L+ +YL +N +
Sbjct: 90 AQLRVVDPTTFRGLGHLHTLHLDRCGLQELG---PGLFRGLAALQYLYLQDNNLQALPDN 146
Query: 533 FFR 535
FR
Sbjct: 147 TFR 149
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 112/459 (24%), Positives = 168/459 (36%), Gaps = 60/459 (13%)
Query: 171 LEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH 230
L + L GNP SL K LK L + +S ++NL L + N +
Sbjct: 82 LNTIVLTGNPLIFMAETSLTGPKFLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHIS 141
Query: 231 G-SLPPSLGLYFP--NLKL--FQTNE-NFFSGSIPISLSNASKL-------EYVEIASNS 277
+LP + FP NLK+ FQ N ++ S SL A+ L + I +
Sbjct: 142 SINLPEN----FPTQNLKVLDFQNNAIHYISRKDTNSLEQATNLSLNFNGNDIKGIEPGA 197
Query: 278 FFGKL--SVNFGGMKNLSYLILEYNN-------LGSGESDEMGFMNS--LANCSKLQVLS 326
F K+ S+ FGG NL + N LG+ E + ++ S + V S
Sbjct: 198 FISKIFQSLKFGGSLNLFIIFKGLQNSTLQSLWLGTFEDTDDQYLTSATFEGLCDMSVES 257
Query: 327 LGGNQFR-GALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQF---- 381
+ + R L S +++Q L L L G +PSGI + +L L N F
Sbjct: 258 INLQKHRFSDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLC 316
Query: 382 ---TGSIP------------------KEMGKLLNLQGLDFGGNHFSGEIPSTL--GNLSS 418
S P + + KL NLQ LD + L NL
Sbjct: 317 QINAASFPSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRH 376
Query: 419 LYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHF 478
L + L N G+ + +L +L++ L P F L L+L+
Sbjct: 377 LQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLL 436
Query: 479 VGSIPPRIGNLKALRCFDVSNNDL-SGEIPSE--LGLCSSLEEIYLAENFFNGFIPSFFR 535
S + L+ LR ++ N G I L + SLE + L+ F
Sbjct: 437 DTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFH 496
Query: 536 TSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDFE 574
R + +DLS N+ G L L YLN++ N+
Sbjct: 497 GLRNVNHLDLSHNSLTGDSMDALSHLKGLYLNMASNNIR 535
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 439 NLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVS 498
NL+R + ++ ++ GT+P + +LDL+ N + S+P L AL DVS
Sbjct: 61 NLDRCELTKL---QVDGTLP--------VLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVS 108
Query: 499 NNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP 555
N L+ L L+E+YL N P + + K+ L+ NN ++P
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNQLTELP 164
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 24/185 (12%)
Query: 208 SIPPSIYNLSFLVIFSVSENQMH----GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLS 263
++PP + + I +SEN ++ +L P L NL + + G++P+
Sbjct: 24 ALPPDLPKDT--TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL-- 79
Query: 264 NASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQ 323
L + ++ S G+ + L+ L + +N L S + +L +LQ
Sbjct: 80 GTLDLSHNQLQSLPLLGQ------TLPALTVLDVSFNRLTSLP------LGALRGLGELQ 127
Query: 324 VLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGN-LVNLYSLQTEENQFT 382
L L GN+ + LP + + +L+ L L NQL +P+G+ N L NL +L +EN
Sbjct: 128 ELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSLY 185
Query: 383 GSIPK 387
+IPK
Sbjct: 186 -TIPK 189
>pdb|2IF6|A Chain A, Crystal Structure Of Metalloprotein Yiix From Escherichia
Coli O157:h7, Duf1105
pdb|2IF6|B Chain B, Crystal Structure Of Metalloprotein Yiix From Escherichia
Coli O157:h7, Duf1105
Length = 186
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 39 SWNDSRHFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRR 98
SW+D R +C ++ K L ++G L+E +L N +Q ++ +G+
Sbjct: 104 SWSDDRQYCS------EVVWKVYQNALGMRVGEQQKLKEFDLSNPLVQAKLKERYGKNIP 157
Query: 99 LETLLLSDNSL 109
LE ++S ++
Sbjct: 158 LEETVVSPQAV 168
>pdb|3OAA|A Chain A, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|B Chain B, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|C Chain C, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|I Chain I, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|J Chain J, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|K Chain K, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Q Chain Q, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|R Chain R, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|S Chain S, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Y Chain Y, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|Z Chain Z, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
pdb|3OAA|AA Chain a, Structure Of The E.Coli F1-Atp Synthase Inhibited By
Subunit Epsilon
Length = 513
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 458 PGDIFNISS------LSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELG 511
PGD+F + S V+ + E G + + G+L AL + D+S +P+ +
Sbjct: 287 PGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNV- 345
Query: 512 LCSSLEEIYLAENFFNGFI 530
+ + +I+L N FN I
Sbjct: 346 ISITDGQIFLETNLFNAGI 364
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 439 NLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVS 498
NL+R + ++ ++ GT+P + +LDL+ N + S+P L AL DVS
Sbjct: 61 NLDRCELTKL---QVDGTLP--------VLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVS 108
Query: 499 NNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP 555
N L+ L L+E+YL N P + + K+ L+ NN ++P
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNQLTELP 164
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 24/185 (12%)
Query: 208 SIPPSIYNLSFLVIFSVSENQMH----GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLS 263
++PP + + I +SEN ++ +L P L NL + + G++P+
Sbjct: 24 ALPPDLPKDT--TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL-- 79
Query: 264 NASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQ 323
L + ++ S G+ + L+ L + +N L S + +L +LQ
Sbjct: 80 GTLDLSHNQLQSLPLLGQ------TLPALTVLDVSFNRLTSLP------LGALRGLGELQ 127
Query: 324 VLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGN-LVNLYSLQTEENQFT 382
L L GN+ + LP + + +L+ L L NQL +P+G+ N L NL +L +EN
Sbjct: 128 ELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSLY 185
Query: 383 GSIPK 387
+IPK
Sbjct: 186 -TIPK 189
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 24/185 (12%)
Query: 208 SIPPSIYNLSFLVIFSVSENQMH----GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLS 263
++PP + + I +SEN ++ +L P L NL + + G++P+
Sbjct: 24 ALPPDLPKDT--TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL-- 79
Query: 264 NASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQ 323
L + ++ S G+ + L+ L + +N L S + +L +LQ
Sbjct: 80 GTLDLSHNQLQSLPLLGQ------TLPALTVLDVSFNRLTSLP------LGALRGLGELQ 127
Query: 324 VLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGN-LVNLYSLQTEENQFT 382
L L GN+ + LP + + +L+ L L NQL +P+G+ N L NL +L +EN
Sbjct: 128 ELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSLY 185
Query: 383 GSIPK 387
+IPK
Sbjct: 186 -TIPK 189
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 439 NLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVS 498
NL+R + ++ ++ GT+P + +LDL+ N + S+P L AL DVS
Sbjct: 61 NLDRCELTKL---QVDGTLP--------VLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVS 108
Query: 499 NNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP 555
N L+ L L+E+YL N P + + K+ L+ NN ++P
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNQLTELP 164
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 48/185 (25%), Positives = 84/185 (45%), Gaps = 24/185 (12%)
Query: 208 SIPPSIYNLSFLVIFSVSENQMH----GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLS 263
++PP + + I +SEN ++ +L P L NL + + G++P+
Sbjct: 24 ALPPDLPKDT--TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVL-- 79
Query: 264 NASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQ 323
L + ++ S G+ + L+ L + +N L S + +L +LQ
Sbjct: 80 GTLDLSHNQLQSLPLLGQ------TLPALTVLDVSFNRLTSLP------LGALRGLGELQ 127
Query: 324 VLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGN-LVNLYSLQTEENQFT 382
L L GN+ + LP + + +L+ L L NQL +P+G+ N L NL +L +EN
Sbjct: 128 ELYLKGNELK-TLPPGLLTPTPKLEKLSLANNQL-TELPAGLLNGLENLDTLLLQENSLY 185
Query: 383 GSIPK 387
+IPK
Sbjct: 186 -TIPK 189
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 439 NLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVS 498
NL+R + ++ ++ GT+P + +LDL+ N + S+P L AL DVS
Sbjct: 61 NLDRCELTKL---QVDGTLP--------VLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVS 108
Query: 499 NNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP 555
N L+ L L+E+YL N P + + K+ L+ NN ++P
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNQLTELP 164
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 12/112 (10%)
Query: 439 NLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVS 498
NL+R + ++ ++ GT+P + +LDL+ N + S+P L AL DVS
Sbjct: 61 NLDRCELTKL---QVDGTLP--------VLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVS 108
Query: 499 NNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNF 550
N L+ L L+E+YL N P + + K+ L+ N+
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL 160
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 3/92 (3%)
Query: 96 LRRLETLLLSDNSLVGKIPANL-SYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPM 154
+R L L L N + ++P++L L + G+NKL F + KLKQL L
Sbjct: 146 MRNLSHLELRAN--IEEMPSHLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLAS 203
Query: 155 NNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIP 186
N L LTSL+ + L NP+ + P
Sbjct: 204 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 235
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 45/110 (40%)
Query: 72 LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNN 131
L+ L+ + L +N +Q F L L L L N + L L+L N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 132 KLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPF 181
++ P F L +L L L NNL+ L L +L+ + L NP+
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 45/110 (40%)
Query: 72 LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNN 131
L+ L+ + L +N +Q F L L L L N + L L+L N
Sbjct: 127 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 186
Query: 132 KLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPF 181
++ P F L +L L L NNL+ L L +L+ + L NP+
Sbjct: 187 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 236
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 22/186 (11%)
Query: 408 EIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFA-------------NELS 454
E+P T + L + L N L +P+S+ +L RL L + A + S
Sbjct: 118 ELPDTXQQFAGLETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDAS 176
Query: 455 GTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCS 514
G G + N+ SL + E + S+P I NL+ L+ + N+ LS P+ +
Sbjct: 177 GEHQG-LVNLQSLRL-----EWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA-IHHLP 229
Query: 515 SLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDF 573
LEE+ L P F ++++ L + +P+ + L+ LE L+L
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289
Query: 574 EGRLPT 579
RLP+
Sbjct: 290 LSRLPS 295
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 36/90 (40%)
Query: 100 ETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTG 159
+ L L N + P ++LT L L N+L F L KL LAL +N L
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKS 102
Query: 160 GIPPFLGNLTSLEVVSLAGNPFGGNIPDSL 189
NL SL + L NP+ D L
Sbjct: 103 IPMGVFDNLKSLTHIYLFNNPWDCECSDIL 132
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 174 VSLAGNPFGGNIPDSLGQLKELKTLGIGGN 203
+SL G G +PD++GQL EL+ L +G +
Sbjct: 86 LSLEGFGASGRVPDAIGQLTELEVLALGSH 115
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 101/460 (21%), Positives = 173/460 (37%), Gaps = 68/460 (14%)
Query: 57 RSKALSGLLSPQIGNLSFLREINLMNNTI--QGEIPLEFGRLRRLETLLLSDNSLVGKIP 114
+++ S L P G L+ L+ I+ +N I E LE + + L L+ NSL ++
Sbjct: 132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVS 191
Query: 115 ANLSYCSR----------------LTVLVLGN--NKLVGSIPFEFVSLYKLKQLALPMNN 156
+ C TV + GN N + S F + + + +N
Sbjct: 192 VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251
Query: 157 LTGGIPPFLGNLTSLEVVSL---AGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSI 213
+ L V L G F N LK+LK L + N ++ +
Sbjct: 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLN-SRVFETLKDLKVLNLAYNKINKIADEAF 310
Query: 214 YNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEI 273
Y L L + ++S N + G L S P + +N + + KL+ +++
Sbjct: 311 YGLDNLQVLNLSYNLL-GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369
Query: 274 ASNSFFGKLSVNF-----------GGMKNLSYLILEYN--NLGSGESDEMGFMNSLANCS 320
N+ +++F + L + L N +L + + + L
Sbjct: 370 RDNAL---TTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426
Query: 321 KLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQ 380
LQ+L L N+F + + L+ L LG N L + + + +
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA-----------WETELCWDV 475
Query: 381 FTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSL-GN 439
F G L +LQ L N+ + P +L++L + L N L+ + + L N
Sbjct: 476 FEG--------LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN 527
Query: 440 LERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFV 479
LE IL++ N+L P D+F SLSV LD+ N F+
Sbjct: 528 LE---ILDISRNQLLAPNP-DVF--VSLSV-LDITHNKFI 560
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 140/315 (44%), Gaps = 78/315 (24%)
Query: 67 PQIGNLSFLREINLMNNTIQG--EIP--LEF-----GRLRRLE--------TLLLSDNSL 109
P++ N SFL+ I++ NN+++ ++P LEF +L L T + +DN+
Sbjct: 147 PELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS 206
Query: 110 VGKIPANLSYCSRLTVLVLGNNKL-----VGSIPFEFVSLYKLKQLALPMNNLTGGIPPF 164
+ K+P L +V GNN L + ++PF ++Y NNL +P
Sbjct: 207 LKKLP---DLPLSLESIVAGNNILEELPELQNLPF-LTTIYA-------DNNLLKTLPDL 255
Query: 165 LGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSG--SIPPSIYNLSFLVIF 222
SLE +++ N + ++P+ L Q L L + N SG +PP++Y L
Sbjct: 256 PP---SLEALNVRDN-YLTDLPE-LPQ--SLTFLDVSENIFSGLSELPPNLYYL------ 302
Query: 223 SVSENQMHG--SLPPSL-GLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFF 279
+ S N++ LPPSL L N KL + ++P +LE + IAS F
Sbjct: 303 NASSNEIRSLCDLPPSLEELNVSNNKLIEL------PALP------PRLERL-IAS---F 346
Query: 280 GKLSVNFGGMKNLSYLILEYNNLGS----GESDEMGFMNS-LANCSK----LQVLSLGGN 330
L+ +NL L +EYN L ES E MNS LA + L+ L + N
Sbjct: 347 NHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406
Query: 331 QFR--GALPHSIANL 343
R +P S+ +L
Sbjct: 407 PLREFPDIPESVEDL 421
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,632,735
Number of Sequences: 62578
Number of extensions: 814396
Number of successful extensions: 2684
Number of sequences better than 100.0: 119
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 1921
Number of HSP's gapped (non-prelim): 442
length of query: 627
length of database: 14,973,337
effective HSP length: 105
effective length of query: 522
effective length of database: 8,402,647
effective search space: 4386181734
effective search space used: 4386181734
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)