Query 037951
Match_columns 627
No_of_seqs 413 out of 4247
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 06:02:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.7E-69 3.8E-74 620.3 45.0 595 4-611 15-621 (968)
2 PLN00113 leucine-rich repeat r 100.0 7.7E-59 1.7E-63 532.5 38.1 536 47-603 49-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.8E-37 3.9E-42 302.0 11.0 395 47-451 50-449 (873)
4 KOG4194 Membrane glycoprotein 100.0 9.9E-38 2.1E-42 303.9 7.9 393 74-477 53-450 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 2.5E-40 5.5E-45 308.3 -12.8 476 98-597 46-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 7.4E-40 1.6E-44 305.1 -13.3 471 55-574 51-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 3.8E-38 8.2E-43 322.9 -7.3 484 78-598 3-490 (1081)
8 KOG0618 Serine/threonine phosp 100.0 2.6E-35 5.7E-40 302.1 -7.0 464 72-572 20-487 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 3E-34 6.5E-39 281.6 -3.5 365 70-452 4-373 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.3E-32 2.8E-37 270.2 -1.9 366 168-551 6-375 (1255)
11 PLN03210 Resistant to P. syrin 99.9 1.4E-22 3.1E-27 233.0 31.3 346 90-452 551-904 (1153)
12 PLN03210 Resistant to P. syrin 99.9 3.9E-23 8.4E-28 237.6 25.9 341 66-429 551-905 (1153)
13 KOG4237 Extracellular matrix p 99.9 3.1E-26 6.8E-31 214.2 -3.4 446 52-548 49-498 (498)
14 KOG4237 Extracellular matrix p 99.9 7.2E-26 1.6E-30 211.7 -3.9 427 78-571 51-498 (498)
15 PRK15387 E3 ubiquitin-protein 99.8 4E-19 8.6E-24 189.7 17.8 113 75-206 203-315 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 4.2E-19 9.2E-24 189.5 17.9 261 246-558 205-465 (788)
17 cd00116 LRR_RI Leucine-rich re 99.8 2.1E-19 4.6E-24 180.2 3.4 90 365-454 77-178 (319)
18 cd00116 LRR_RI Leucine-rich re 99.8 3.1E-19 6.8E-24 178.9 3.9 250 346-596 24-319 (319)
19 PRK15370 E3 ubiquitin-protein 99.8 5.1E-18 1.1E-22 182.5 13.1 223 267-527 179-401 (754)
20 PRK15370 E3 ubiquitin-protein 99.8 3.4E-18 7.4E-23 183.9 11.7 246 290-574 178-428 (754)
21 KOG0617 Ras suppressor protein 99.7 1E-19 2.3E-24 151.1 -4.6 164 69-238 29-193 (264)
22 KOG0617 Ras suppressor protein 99.6 9.5E-18 2.1E-22 139.5 -3.4 180 366-552 30-213 (264)
23 PLN03150 hypothetical protein; 99.4 8.7E-13 1.9E-17 142.0 13.2 156 12-182 367-528 (623)
24 KOG0532 Leucine-rich repeat (L 99.2 5.4E-13 1.2E-17 131.8 -1.9 192 347-549 77-271 (722)
25 KOG0532 Leucine-rich repeat (L 99.2 2.8E-13 6.2E-18 133.8 -4.4 197 317-525 72-271 (722)
26 COG4886 Leucine-rich repeat (L 99.2 4E-11 8.6E-16 123.7 8.0 195 324-553 97-292 (394)
27 COG4886 Leucine-rich repeat (L 99.2 6.9E-11 1.5E-15 121.9 8.5 199 293-507 96-294 (394)
28 PLN03150 hypothetical protein; 99.2 6.5E-11 1.4E-15 127.6 8.5 116 492-610 420-538 (623)
29 KOG1259 Nischarin, modulator o 99.1 1.4E-11 3.1E-16 112.3 1.7 203 314-527 208-412 (490)
30 KOG1909 Ran GTPase-activating 99.1 3E-12 6.6E-17 119.5 -2.8 191 143-357 90-310 (382)
31 KOG1909 Ran GTPase-activating 99.1 7.6E-12 1.6E-16 116.9 -0.8 108 346-453 186-310 (382)
32 KOG1259 Nischarin, modulator o 99.1 2.6E-11 5.7E-16 110.7 1.0 132 440-578 283-416 (490)
33 PF14580 LRR_9: Leucine-rich r 99.1 6.4E-11 1.4E-15 104.0 2.9 107 71-182 17-126 (175)
34 KOG3207 Beta-tubulin folding c 99.0 3.1E-11 6.7E-16 116.0 0.1 206 366-575 118-340 (505)
35 KOG4658 Apoptotic ATPase [Sign 99.0 2.6E-10 5.6E-15 125.5 5.0 129 73-204 523-653 (889)
36 KOG3207 Beta-tubulin folding c 99.0 6.1E-11 1.3E-15 114.0 -0.0 191 118-333 118-314 (505)
37 PF14580 LRR_9: Leucine-rich r 98.9 1.5E-09 3.3E-14 95.4 4.8 109 93-206 15-126 (175)
38 KOG4658 Apoptotic ATPase [Sign 98.9 1.9E-09 4.2E-14 118.7 6.5 274 290-575 523-808 (889)
39 PF13855 LRR_8: Leucine rich r 98.8 4.1E-09 8.9E-14 76.0 3.4 61 490-550 1-61 (61)
40 PF13855 LRR_8: Leucine rich r 98.8 4.9E-09 1.1E-13 75.6 3.1 59 74-132 2-60 (61)
41 KOG0531 Protein phosphatase 1, 98.7 3.2E-09 6.9E-14 109.6 -0.2 150 72-230 71-221 (414)
42 KOG0531 Protein phosphatase 1, 98.6 4.1E-09 9E-14 108.8 -1.2 129 288-430 70-199 (414)
43 KOG2120 SCF ubiquitin ligase, 98.5 2.9E-09 6.3E-14 97.5 -5.8 160 264-430 208-376 (419)
44 KOG1859 Leucine-rich repeat pr 98.4 4.5E-09 9.8E-14 107.4 -6.9 123 443-573 166-291 (1096)
45 PF08263 LRRNT_2: Leucine rich 98.4 3.6E-07 7.7E-12 60.0 4.2 40 16-55 2-43 (43)
46 KOG2120 SCF ubiquitin ligase, 98.4 9.5E-09 2.1E-13 94.2 -5.6 181 218-404 186-374 (419)
47 KOG1859 Leucine-rich repeat pr 98.3 2.6E-08 5.7E-13 102.0 -5.7 157 66-230 102-292 (1096)
48 KOG2982 Uncharacterized conser 98.3 1.3E-07 2.9E-12 86.8 -1.0 64 265-328 223-287 (418)
49 KOG2982 Uncharacterized conser 98.2 2.8E-07 6.1E-12 84.8 0.4 185 144-333 70-262 (418)
50 COG5238 RNA1 Ran GTPase-activa 98.2 3E-07 6.5E-12 83.5 0.3 87 319-406 156-255 (388)
51 KOG4579 Leucine-rich repeat (L 98.2 9.5E-08 2E-12 77.5 -3.2 79 470-551 57-136 (177)
52 COG5238 RNA1 Ran GTPase-activa 98.1 1.3E-07 2.9E-12 85.7 -3.2 42 141-182 88-133 (388)
53 KOG4579 Leucine-rich repeat (L 98.1 2.8E-07 6.2E-12 74.7 -1.8 141 470-623 31-177 (177)
54 PRK15386 type III secretion pr 98.0 2.4E-05 5.1E-10 77.8 8.9 56 366-427 49-104 (426)
55 KOG1644 U2-associated snRNP A' 97.9 1.7E-05 3.6E-10 69.3 5.8 105 97-203 42-150 (233)
56 PF12799 LRR_4: Leucine Rich r 97.9 9E-06 1.9E-10 53.4 2.8 36 491-527 2-37 (44)
57 PRK15386 type III secretion pr 97.9 4.9E-05 1.1E-09 75.6 8.9 72 346-429 53-124 (426)
58 KOG4341 F-box protein containi 97.8 9.2E-07 2E-11 85.4 -4.4 278 291-573 139-438 (483)
59 PF12799 LRR_4: Leucine Rich r 97.8 1.8E-05 3.9E-10 52.0 2.8 36 98-134 2-37 (44)
60 KOG3665 ZYG-1-like serine/thre 97.6 1.7E-05 3.6E-10 85.8 -0.1 126 119-246 146-279 (699)
61 KOG3665 ZYG-1-like serine/thre 97.5 2.6E-05 5.7E-10 84.3 -0.0 105 169-276 122-230 (699)
62 PF13306 LRR_5: Leucine rich r 97.5 0.00034 7.4E-09 59.3 6.8 123 67-195 6-128 (129)
63 KOG4341 F-box protein containi 97.4 4.9E-06 1.1E-10 80.5 -5.2 15 238-252 212-226 (483)
64 KOG1644 U2-associated snRNP A' 97.4 0.00031 6.7E-09 61.6 5.5 83 122-206 43-126 (233)
65 PF13306 LRR_5: Leucine rich r 97.2 0.0012 2.6E-08 55.8 7.8 55 484-541 75-129 (129)
66 KOG2739 Leucine-rich acidic nu 96.9 0.0004 8.7E-09 63.6 1.9 62 71-134 41-104 (260)
67 KOG2739 Leucine-rich acidic nu 96.8 0.00064 1.4E-08 62.4 1.9 93 89-183 35-130 (260)
68 KOG1947 Leucine rich repeat pr 96.4 0.00039 8.5E-09 74.0 -2.5 38 319-356 268-306 (482)
69 KOG2123 Uncharacterized conser 96.4 9E-05 1.9E-09 68.0 -6.3 82 73-158 19-101 (388)
70 KOG1947 Leucine rich repeat pr 96.3 0.0004 8.8E-09 73.9 -3.1 65 316-380 239-306 (482)
71 KOG2123 Uncharacterized conser 96.2 0.00044 9.6E-09 63.6 -2.9 81 320-405 19-100 (388)
72 KOG0473 Leucine-rich repeat pr 95.5 0.00022 4.8E-09 63.7 -7.4 102 53-157 22-123 (326)
73 PF00560 LRR_1: Leucine Rich R 95.0 0.01 2.2E-07 32.2 0.7 18 492-510 2-19 (22)
74 KOG4308 LRR-containing protein 94.7 0.00021 4.5E-09 74.1 -11.9 60 492-551 235-303 (478)
75 PF00560 LRR_1: Leucine Rich R 94.5 0.016 3.4E-07 31.4 0.8 19 516-535 2-20 (22)
76 PF13504 LRR_7: Leucine rich r 92.2 0.087 1.9E-06 26.4 1.2 13 491-503 2-14 (17)
77 KOG4308 LRR-containing protein 92.2 0.0014 3E-08 68.0 -10.7 60 371-430 235-303 (478)
78 KOG0473 Leucine-rich repeat pr 91.9 0.0041 8.8E-08 55.9 -6.6 88 92-182 37-124 (326)
79 KOG3864 Uncharacterized conser 90.4 0.058 1.3E-06 47.8 -0.8 82 369-450 101-185 (221)
80 smart00370 LRR Leucine-rich re 87.6 0.5 1.1E-05 26.7 2.0 14 515-528 3-16 (26)
81 smart00369 LRR_TYP Leucine-ric 87.6 0.5 1.1E-05 26.7 2.0 14 515-528 3-16 (26)
82 KOG3864 Uncharacterized conser 86.8 0.096 2.1E-06 46.5 -1.9 35 368-402 150-185 (221)
83 PF13516 LRR_6: Leucine Rich r 84.7 0.49 1.1E-05 26.1 1.0 20 320-339 2-21 (24)
84 smart00370 LRR Leucine-rich re 83.7 1 2.2E-05 25.3 2.0 13 98-110 3-15 (26)
85 smart00369 LRR_TYP Leucine-ric 83.7 1 2.2E-05 25.3 2.0 13 98-110 3-15 (26)
86 KOG4242 Predicted myosin-I-bin 81.9 13 0.00029 37.9 10.0 83 491-573 355-452 (553)
87 KOG4242 Predicted myosin-I-bin 69.6 24 0.00052 36.1 8.2 59 347-405 415-480 (553)
88 smart00365 LRR_SD22 Leucine-ri 67.5 4.8 0.0001 22.8 1.7 13 515-527 3-15 (26)
89 smart00364 LRR_BAC Leucine-ric 67.1 3.9 8.4E-05 23.1 1.3 17 491-508 3-19 (26)
90 smart00368 LRR_RI Leucine rich 60.6 7 0.00015 22.5 1.7 13 491-503 3-15 (28)
91 smart00367 LRR_CC Leucine-rich 39.6 22 0.00047 19.8 1.5 13 537-549 1-13 (26)
92 KOG3763 mRNA export factor TAP 31.6 26 0.00057 36.7 1.6 65 488-552 216-284 (585)
93 KOG3763 mRNA export factor TAP 29.9 26 0.00057 36.6 1.3 12 347-358 272-283 (585)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-69 Score=620.35 Aligned_cols=595 Identities=37% Similarity=0.580 Sum_probs=549.9
Q ss_pred hHHHHHhhhcC-CHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccee---------ecCCCCcceecccccCCCC
Q 037951 4 FFITLLQVAAF-EEGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITC---------DLRSKALSGLLSPQIGNLS 73 (627)
Q Consensus 4 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~c---------~l~~~~l~~~~~~~l~~l~ 73 (627)
+++++.....+ .++|+++|.+||.++. +|...+.+|....++|.|.|+.| |++++++++.++..+..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~ 93 (968)
T PLN00113 15 MLFFLFLNFSMLHAEELELLLSFKSSIN-DPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLP 93 (968)
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHhCC-CCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCC
Confidence 33333333344 6678999999999995 77778899988888999999999 5778889999999999999
Q ss_pred CCCEEECCCCCCcccCCcccC-CCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeC
Q 037951 74 FLREINLMNNTIQGEIPLEFG-RLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLAL 152 (627)
Q Consensus 74 ~L~~L~Ls~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l 152 (627)
+|++|++++|.+.+.+|..+. .+++|++|++++|.+++..|. +.+++|++|++++|.+.+..|..++.+++|++|++
T Consensus 94 ~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 171 (968)
T PLN00113 94 YIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDL 171 (968)
T ss_pred CCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEEC
Confidence 999999999999988887654 899999999999999987775 56899999999999999899999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccC
Q 037951 153 PMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGS 232 (627)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 232 (627)
++|.+.+.+|..++++++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..++.+++|+.|++++|.+.+.
T Consensus 172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ 251 (968)
T PLN00113 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGP 251 (968)
T ss_pred ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccc
Q 037951 233 LPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGF 312 (627)
Q Consensus 233 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 312 (627)
+|..+.. +++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+.++++|+.|++++|.+.+ ..
T Consensus 252 ~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~------~~ 324 (968)
T PLN00113 252 IPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG------KI 324 (968)
T ss_pred cChhHhC-CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCC------cC
Confidence 9988776 8999999999999999999999999999999999999999999999999999999999999887 34
Q ss_pred cccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCC
Q 037951 313 MNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKL 392 (627)
Q Consensus 313 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 392 (627)
+..+..+++|+.|++++|.+.+..|..+.... +|+.|++++|++.+.+|..+..+++|+.|++++|.+.+..|..+..+
T Consensus 325 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~ 403 (968)
T PLN00113 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGAC 403 (968)
T ss_pred ChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-CCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCC
Confidence 55788899999999999999999999988886 89999999999999999999999999999999999999999999999
Q ss_pred CCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEE
Q 037951 393 LNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLD 472 (627)
Q Consensus 393 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~ 472 (627)
++|+.|++++|++++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+.+|..+ ....+ +.|+
T Consensus 404 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L-~~L~ 481 (968)
T PLN00113 404 RSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRL-ENLD 481 (968)
T ss_pred CCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccc-eEEE
Confidence 999999999999999999999999999999999999999999888999999999999999998888755 44667 8999
Q ss_pred ccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCcc
Q 037951 473 LAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFG 552 (627)
Q Consensus 473 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~ 552 (627)
+++|++.+..|..+.++++|++|++++|.+.+.+|..+..+++|++|+|++|.+++.+|..+..+++|+.||+++|.+.+
T Consensus 482 ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 561 (968)
T PLN00113 482 LSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSG 561 (968)
T ss_pred CcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhcccCc-CCeeeCcCCcccccCCCCCccCCCCccccccCCCCcccCCCCCCCCCCC
Q 037951 553 QIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIHELQLPKCPE 611 (627)
Q Consensus 553 ~~p~~~~~~~-L~~L~ls~n~l~~~~p~~~~~~~l~~l~~~~n~~l~~~~~~l~i~~c~~ 611 (627)
.+|..+..+. |+++++++|++.+.+|..+.+.++....+.|||.+||..+...+++|..
T Consensus 562 ~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~~~~~~~~c~~ 621 (968)
T PLN00113 562 EIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGDTTSGLPPCKR 621 (968)
T ss_pred cCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCccccCCCCCcc
Confidence 9999998888 9999999999999999999999999999999999998766556677753
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.7e-59 Score=532.45 Aligned_cols=536 Identities=33% Similarity=0.507 Sum_probs=493.7
Q ss_pred CCccc--ceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCcccc-CCCCC
Q 037951 47 CEWEG--ITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLS-YCSRL 123 (627)
Q Consensus 47 c~~~~--~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L 123 (627)
-.|.. ..|.+.+..+. +..+++.|+++++.+.+.++..|..+++|++|+|++|++.+.+|..+. .+++|
T Consensus 49 ~~w~~~~~~c~w~gv~c~--------~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L 120 (968)
T PLN00113 49 SNWNSSADVCLWQGITCN--------NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSL 120 (968)
T ss_pred CCCCCCCCCCcCcceecC--------CCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCC
Confidence 46742 34666554443 234799999999999999999999999999999999999988887754 99999
Q ss_pred CEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCc
Q 037951 124 TVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGN 203 (627)
Q Consensus 124 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 203 (627)
++|++++|++++.+|. +.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus 121 ~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 198 (968)
T PLN00113 121 RYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198 (968)
T ss_pred CEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence 9999999999877775 56899999999999999999999999999999999999999899999999999999999999
Q ss_pred cccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCc
Q 037951 204 NLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLS 283 (627)
Q Consensus 204 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 283 (627)
.+.+.+|..++.+++|+.|++++|.+.+.+|..+.. +++|++|++++|.+.+.+|..+.++++|+.|++++|.+.+..|
T Consensus 199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 277 (968)
T PLN00113 199 QLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIP 277 (968)
T ss_pred CCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCc
Confidence 999999999999999999999999999999988876 9999999999999999999999999999999999999999999
Q ss_pred cCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcc
Q 037951 284 VNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPS 363 (627)
Q Consensus 284 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 363 (627)
..+..+++|+.|++++|.+.+ .++..+..+++|+.|++++|.+.+..|..+..++ +|+.|++++|.+.+.+|.
T Consensus 278 ~~l~~l~~L~~L~Ls~n~l~~------~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~p~ 350 (968)
T PLN00113 278 PSIFSLQKLISLDLSDNSLSG------EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLP-RLQVLQLWSNKFSGEIPK 350 (968)
T ss_pred hhHhhccCcCEEECcCCeecc------CCChhHcCCCCCcEEECCCCccCCcCChhHhcCC-CCCEEECcCCCCcCcCCh
Confidence 889999999999999999876 4556778899999999999999999999998887 899999999999999999
Q ss_pred cccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCC
Q 037951 364 GIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERL 443 (627)
Q Consensus 364 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L 443 (627)
.+..+++|+.|++++|++.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++..|..+..+++|
T Consensus 351 ~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 430 (968)
T PLN00113 351 NLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430 (968)
T ss_pred HHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCC
Q 037951 444 AILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAE 523 (627)
Q Consensus 444 ~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~ 523 (627)
+.|++++|.+.+.+|..+..++++ +.|++++|.+.+..|..+ ..++|+.|++++|++++..|..+..+++|+.|++++
T Consensus 431 ~~L~Ls~N~l~~~~~~~~~~l~~L-~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 508 (968)
T PLN00113 431 YFLDISNNNLQGRINSRKWDMPSL-QMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508 (968)
T ss_pred CEEECcCCcccCccChhhccCCCC-cEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcC
Confidence 999999999999999888889999 999999999998888765 458999999999999999999999999999999999
Q ss_pred CcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCC-CccCCCCccccccCCCCcccC
Q 037951 524 NFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTR-GIFANASAISVGGCNRLCGGI 601 (627)
Q Consensus 524 n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~-~~~~~l~~l~~~~n~~l~~~~ 601 (627)
|.+++.+|..+..+++|++|++++|.+++.+|..+..++ |+.|++++|++++.+|.. ..+.+|+.+++.+|+ +.|.+
T Consensus 509 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~-l~~~~ 587 (968)
T PLN00113 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNH-LHGSL 587 (968)
T ss_pred CcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCc-ceeeC
Confidence 999999999999999999999999999999999999888 999999999999999954 567889999999997 55666
Q ss_pred CC
Q 037951 602 HE 603 (627)
Q Consensus 602 ~~ 603 (627)
|.
T Consensus 588 p~ 589 (968)
T PLN00113 588 PS 589 (968)
T ss_pred CC
Confidence 64
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-37 Score=302.04 Aligned_cols=395 Identities=22% Similarity=0.217 Sum_probs=321.1
Q ss_pred CCcccceeecCCCCcceecccccCC--CCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCC
Q 037951 47 CEWEGITCDLRSKALSGLLSPQIGN--LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLT 124 (627)
Q Consensus 47 c~~~~~~c~l~~~~l~~~~~~~l~~--l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 124 (627)
|.-.+..-|++.+.+.......+.. ....+.||+++|++....+..|.++++|+.+++.+|.++ .+|...+...+|+
T Consensus 50 c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~ 128 (873)
T KOG4194|consen 50 CPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLE 128 (873)
T ss_pred CCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccccccee
Confidence 4444444455555555432222222 135678999999999888888999999999999999988 7888777778899
Q ss_pred EEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCcc
Q 037951 125 VLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNN 204 (627)
Q Consensus 125 ~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 204 (627)
.|+|.+|.|+..-.+.+..++.||.|||+.|.++...-..|..-.++++|+|++|+|+......|..+.+|.+|.|++|+
T Consensus 129 ~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr 208 (873)
T KOG4194|consen 129 KLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR 208 (873)
T ss_pred EEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc
Confidence 99999999988888889999999999999999986655667777899999999999998888889999999999999999
Q ss_pred ccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCcc
Q 037951 205 LSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSV 284 (627)
Q Consensus 205 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 284 (627)
++..-+..|.++++|+.|++..|.+. .+....+..+++|+.+.+..|.+.......|..+.++++|++..|++...-..
T Consensus 209 ittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g 287 (873)
T KOG4194|consen 209 ITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG 287 (873)
T ss_pred ccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc
Confidence 99555566777999999999999886 33344455688999999999988877777888899999999999998888788
Q ss_pred CcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCccc
Q 037951 285 NFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSG 364 (627)
Q Consensus 285 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 364 (627)
++-+++.|+.|++++|.|..+..+.| ..+++|+.|+++.|.++..-+..+..+. .|++|+|+.|.++.....+
T Consensus 288 ~lfgLt~L~~L~lS~NaI~rih~d~W------sftqkL~~LdLs~N~i~~l~~~sf~~L~-~Le~LnLs~Nsi~~l~e~a 360 (873)
T KOG4194|consen 288 WLFGLTSLEQLDLSYNAIQRIHIDSW------SFTQKLKELDLSSNRITRLDEGSFRVLS-QLEELNLSHNSIDHLAEGA 360 (873)
T ss_pred cccccchhhhhccchhhhheeecchh------hhcccceeEeccccccccCChhHHHHHH-HhhhhcccccchHHHHhhH
Confidence 88889999999999999888776644 3467889999999999866666676666 8999999999888777777
Q ss_pred ccCCCCCCEEeCCCCcccccc---chhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCC
Q 037951 365 IGNLVNLYSLQTEENQFTGSI---PKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLE 441 (627)
Q Consensus 365 ~~~l~~L~~L~l~~n~~~~~~---~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~ 441 (627)
|..+.+|++||+++|.+...+ ...|.++++|++|++.+|++......+|.++++|++||+.+|.+...-+.+|..+
T Consensus 361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m- 439 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM- 439 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-
Confidence 888899999999999887544 3457788999999999999986666788899999999999999888888888887
Q ss_pred CCCEEECcCC
Q 037951 442 RLAILEMFAN 451 (627)
Q Consensus 442 ~L~~L~l~~n 451 (627)
.|++|.+..-
T Consensus 440 ~Lk~Lv~nSs 449 (873)
T KOG4194|consen 440 ELKELVMNSS 449 (873)
T ss_pred hhhhhhhccc
Confidence 7888877653
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=9.9e-38 Score=303.87 Aligned_cols=393 Identities=20% Similarity=0.190 Sum_probs=341.5
Q ss_pred CCCEEECCCCCCcccCCcccCCC--CCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeee
Q 037951 74 FLREINLMNNTIQGEIPLEFGRL--RRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLA 151 (627)
Q Consensus 74 ~L~~L~Ls~~~~~~~~~~~~~~l--~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 151 (627)
.-+.||.+++.+....-..+..+ ..-+.|++++|++....+..|.++++|+.+.+.+|.++ .+|...+...+|+.|+
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~ 131 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLD 131 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEe
Confidence 45678999988764322222222 34567999999999999999999999999999999998 7888888888899999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCcc
Q 037951 152 LPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHG 231 (627)
Q Consensus 152 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 231 (627)
|.+|.|++.-.+.++-++.|+.|||+.|.++.+....|..-.++++|+|++|.|+..-...|..+.+|..|.++.|+++
T Consensus 132 L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit- 210 (873)
T KOG4194|consen 132 LRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT- 210 (873)
T ss_pred eeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-
Confidence 9999999888888999999999999999999776677888899999999999999877888999999999999999998
Q ss_pred CCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCcc
Q 037951 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMG 311 (627)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 311 (627)
.+|...++.+++|+.|++..|.+.-..-..|..+++|+.+.+..|++.......|-++.+++.|+|+.|++..+..+
T Consensus 211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g--- 287 (873)
T KOG4194|consen 211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEG--- 287 (873)
T ss_pred ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcc---
Confidence 78888887899999999999998765566788999999999999999988888899999999999999999886543
Q ss_pred ccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcC
Q 037951 312 FMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGK 391 (627)
Q Consensus 312 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 391 (627)
++-+++.|++|+++.|.|...-++.+.-.. +|+.|+|++|+++...+..|..+..|++|.++.|.++.....+|.+
T Consensus 288 ---~lfgLt~L~~L~lS~NaI~rih~d~Wsftq-kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 288 ---WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ-KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred ---cccccchhhhhccchhhhheeecchhhhcc-cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence 677889999999999999877777666555 8999999999999888889999999999999999999888888999
Q ss_pred CCCCcEeeccCCcccccCCh---hhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCc
Q 037951 392 LLNLQGLDFGGNHFSGEIPS---TLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLS 468 (627)
Q Consensus 392 l~~L~~L~L~~n~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll 468 (627)
+.+|+.|||+.|.+...+.+ .|..+++|+.|++.+|++......+|..+++|+.|++.+|.+....|..|..+ .+
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~L- 441 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-EL- 441 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hh-
Confidence 99999999999998755443 57789999999999999997777889999999999999999997777777766 66
Q ss_pred cEEEccCCc
Q 037951 469 VSLDLAENH 477 (627)
Q Consensus 469 ~~L~l~~n~ 477 (627)
++|.+..-.
T Consensus 442 k~Lv~nSss 450 (873)
T KOG4194|consen 442 KELVMNSSS 450 (873)
T ss_pred hhhhhcccc
Confidence 677665433
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=2.5e-40 Score=308.26 Aligned_cols=476 Identities=26% Similarity=0.349 Sum_probs=323.7
Q ss_pred CCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECC
Q 037951 98 RLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLA 177 (627)
Q Consensus 98 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 177 (627)
.++.+.+++|.+. .+-+.+.++..|.+|++.+|++. ..|.+++.+..++.++.++|++. .+|+.++.+.+|..++++
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 3444444444444 23333444444444444444444 34444444444444444444444 344444444444444444
Q ss_pred CCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCcccccc
Q 037951 178 GNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGS 257 (627)
Q Consensus 178 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 257 (627)
.|.+. ..++.++.+..+..++..+|+++ ..|+.+.++.++..+++.+|.+....|.... +..|++++...|.++ .
T Consensus 123 ~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~--m~~L~~ld~~~N~L~-t 197 (565)
T KOG0472|consen 123 SNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA--MKRLKHLDCNSNLLE-T 197 (565)
T ss_pred cccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH--HHHHHhcccchhhhh-c
Confidence 44444 33444444555555555555554 4455555555555555555555522222222 555666666655554 6
Q ss_pred CCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccc
Q 037951 258 IPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALP 337 (627)
Q Consensus 258 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 337 (627)
+|..++.+.+|+.|++..|++... | .|.++..|+++++..|.+...+. +..++++++..||+..|++. +.|
T Consensus 198 lP~~lg~l~~L~~LyL~~Nki~~l-P-ef~gcs~L~Elh~g~N~i~~lpa------e~~~~L~~l~vLDLRdNklk-e~P 268 (565)
T KOG0472|consen 198 LPPELGGLESLELLYLRRNKIRFL-P-EFPGCSLLKELHVGENQIEMLPA------EHLKHLNSLLVLDLRDNKLK-EVP 268 (565)
T ss_pred CChhhcchhhhHHHHhhhcccccC-C-CCCccHHHHHHHhcccHHHhhHH------HHhcccccceeeeccccccc-cCc
Confidence 777888999999999999998644 3 68999999999999999887543 24568899999999999998 788
Q ss_pred hhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCC--CCcEe-------eccCCccc--
Q 037951 338 HSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLL--NLQGL-------DFGGNHFS-- 406 (627)
Q Consensus 338 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~--~L~~L-------~L~~n~~~-- 406 (627)
+.+.-+. +|++||+++|.++ ..|..++++ .|+.|-+.+|.+...-.+.+.+-+ -|++| .++...-.
T Consensus 269 de~clLr-sL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e 345 (565)
T KOG0472|consen 269 DEICLLR-SLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTE 345 (565)
T ss_pred hHHHHhh-hhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccc
Confidence 8888887 7999999999998 677789998 999999999987632222111100 01111 11111110
Q ss_pred --cc-CCh---hhhCCCCCCEEEccCCccccccChhhcC--CCCCCEEECcCCcCcccCCccccccccCccEEEccCCcc
Q 037951 407 --GE-IPS---TLGNLSSLYEIFLGDNNLSGVIPSSLGN--LERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHF 478 (627)
Q Consensus 407 --~~-~~~---~~~~~~~L~~L~l~~n~~~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l 478 (627)
.. .+. ......+.+.|++++-+++....+.|.. -.-....+++.|++. .+|..+..+..+...+.+++|.+
T Consensus 346 ~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i 424 (565)
T KOG0472|consen 346 TAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI 424 (565)
T ss_pred ccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc
Confidence 01 111 1233567888999998888443333432 233788999999998 89998888888866667777766
Q ss_pred ccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhc
Q 037951 479 VGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFL 558 (627)
Q Consensus 479 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~ 558 (627)
. .+|..++.+++|+.|++++|-+. .+|..++.+..||.|+++.|++. .+|+.+..+..++.+-.++|++...-|+.+
T Consensus 425 s-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l 501 (565)
T KOG0472|consen 425 S-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGL 501 (565)
T ss_pred c-cchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHh
Confidence 4 78888999999999999999997 89999999999999999999887 688888888889998888899987777778
Q ss_pred ccCc-CCeeeCcCCcccccCCCCCccCCCCccccccCCCC
Q 037951 559 EALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRL 597 (627)
Q Consensus 559 ~~~~-L~~L~ls~n~l~~~~p~~~~~~~l~~l~~~~n~~l 597 (627)
..+. |..||+.+|.+....|..+...+++.+.+.|||+-
T Consensus 502 ~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 8888 99999999999977777788999999999999964
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=7.4e-40 Score=305.14 Aligned_cols=471 Identities=24% Similarity=0.339 Sum_probs=276.2
Q ss_pred ecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcccc
Q 037951 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLV 134 (627)
Q Consensus 55 ~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~ 134 (627)
++++|.+... .+++.++..+.+|++.+|++. ..|.+++.+..++.++.++|++. .+|+.+..+.+|+.++.++|.+.
T Consensus 51 ils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~ 127 (565)
T KOG0472|consen 51 ILSHNDLEVL-REDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK 127 (565)
T ss_pred hhccCchhhc-cHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee
Confidence 3444444432 234455555555566555554 45555555555555555555555 55555555555555555555555
Q ss_pred ccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCcccc
Q 037951 135 GSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIY 214 (627)
Q Consensus 135 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~ 214 (627)
..++.++.+..|+.++..+|+++ ..|+++..+.+|..+++.+|.+.. .|...-+++.|++++...|.+. .+|+.++
T Consensus 128 -el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg 203 (565)
T KOG0472|consen 128 -ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIAMKRLKHLDCNSNLLE-TLPPELG 203 (565)
T ss_pred -ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHHHHHHHhcccchhhhh-cCChhhc
Confidence 45555555555555555555555 345555555555555555555552 2333333555555555555554 4555555
Q ss_pred CCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCE
Q 037951 215 NLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSY 294 (627)
Q Consensus 215 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 294 (627)
.+.+|+.|++..|++ . .+| .|..|..|.+++++.|.+..........++++..
T Consensus 204 ~l~~L~~LyL~~Nki-------------------------~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 204 GLESLELLYLRRNKI-------------------------R-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLV 256 (565)
T ss_pred chhhhHHHHhhhccc-------------------------c-cCC-CCCccHHHHHHHhcccHHHhhHHHHhccccccee
Confidence 555555555555544 3 344 5778999999999999987665566679999999
Q ss_pred EeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccC-----CC
Q 037951 295 LILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGN-----LV 369 (627)
Q Consensus 295 L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-----l~ 369 (627)
||+..|+++.+ +..+.-+++|+.||+++|.++ ..|..++++ +|+.|.+.+|.+...--+.+.. ++
T Consensus 257 LDLRdNklke~-------Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl--hL~~L~leGNPlrTiRr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 257 LDLRDNKLKEV-------PDEICLLRSLERLDLSNNDIS-SLPYSLGNL--HLKFLALEGNPLRTIRREIISKGTQEVLK 326 (565)
T ss_pred eeccccccccC-------chHHHHhhhhhhhcccCCccc-cCCcccccc--eeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence 99999999874 456777899999999999999 778888888 6999999999875311000000 01
Q ss_pred CCCE----EeCCCCc---cc-cc----cchhhcCCCCCcEeeccCCcccccCChhhhCC--CCCCEEEccCCccccccCh
Q 037951 370 NLYS----LQTEENQ---FT-GS----IPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNL--SSLYEIFLGDNNLSGVIPS 435 (627)
Q Consensus 370 ~L~~----L~l~~n~---~~-~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~--~~L~~L~l~~n~~~~~~~~ 435 (627)
.|+. =-++... -+ .. .........+.+.|++++-+++.+..+.|..- .-....+++.|++. .+|.
T Consensus 327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk 405 (565)
T KOG0472|consen 327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPK 405 (565)
T ss_pred HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhh
Confidence 1111 0000000 00 00 00112234455666666666663322233221 12556666666665 4555
Q ss_pred hhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 037951 436 SLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSS 515 (627)
Q Consensus 436 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 515 (627)
.+..+..+.+.-+..+...+..|..++.++.+ ..|++++|-+. .+|..++.+..|+.||+|.|++. .+|.++-.+..
T Consensus 406 ~L~~lkelvT~l~lsnn~isfv~~~l~~l~kL-t~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~ 482 (565)
T KOG0472|consen 406 RLVELKELVTDLVLSNNKISFVPLELSQLQKL-TFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQT 482 (565)
T ss_pred hhHHHHHHHHHHHhhcCccccchHHHHhhhcc-eeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHH
Confidence 55544444433333333333556666666666 56666666655 45666666666666666666665 66666665566
Q ss_pred CCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCccc
Q 037951 516 LEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFE 574 (627)
Q Consensus 516 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~ 574 (627)
++.+-.++|++....|.++.++.+|.+||+.+|.+. .+|..+++++ |++|++++|++.
T Consensus 483 lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 483 LETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 666666666666666666666666666666666665 5666666666 666666666665
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=100.00 E-value=3.8e-38 Score=322.87 Aligned_cols=484 Identities=26% Similarity=0.355 Sum_probs=340.0
Q ss_pred EECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCC
Q 037951 78 INLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNL 157 (627)
Q Consensus 78 L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l 157 (627)
+|.+.+.+. .+|.-+-.-..++.|+++.|-+....-+.+.+..+|+.|++++|.+. ..|..+..+.+|+.|+++.|.+
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i 80 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYI 80 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhH
Confidence 455555554 44544444444666666666554222233444555777777777666 5666667777777777777766
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhh
Q 037951 158 TGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSL 237 (627)
Q Consensus 158 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 237 (627)
. ..|....++.+|+++.|.+|... ..|..+..+++|+.|+++.|.+. .+|..+..++.++.+.+++|.....++.
T Consensus 81 ~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~-- 155 (1081)
T KOG0618|consen 81 R-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQ-- 155 (1081)
T ss_pred h-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcc--
Confidence 6 45566666777777777777666 56666777777777777777766 6666666777777777766622212221
Q ss_pred hhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCC
Q 037951 238 GLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLA 317 (627)
Q Consensus 238 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~ 317 (627)
...+.+++..+.+.+.++..+..++. .+++++|.+. ...+..+++|+.+....|.+.....
T Consensus 156 ----~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~---------- 216 (1081)
T KOG0618|consen 156 ----TSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEI---------- 216 (1081)
T ss_pred ----ccchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEEe----------
Confidence 12666777777777777666666665 6888888775 2235667788888888877765322
Q ss_pred CCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcE
Q 037951 318 NCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQG 397 (627)
Q Consensus 318 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 397 (627)
.-++++.|+.+.|.++...+. ..+.++++++++.|+++ .+|.+++.+.+|+.++..+|.++ .+|..+...++|+.
T Consensus 217 ~g~~l~~L~a~~n~l~~~~~~---p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~ 291 (1081)
T KOG0618|consen 217 SGPSLTALYADHNPLTTLDVH---PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVS 291 (1081)
T ss_pred cCcchheeeeccCcceeeccc---cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHH
Confidence 237788888888888733222 22347999999999988 56688999999999999999986 77878888889999
Q ss_pred eeccCCcccccCChhhhCCCCCCEEEccCCccccccChh-hcCCCC-CCEEECcCCcCcccCCccc-cccccCccEEEcc
Q 037951 398 LDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSS-LGNLER-LAILEMFANELSGTIPGDI-FNISSLSVSLDLA 474 (627)
Q Consensus 398 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-l~~l~~-L~~L~l~~n~l~~~~~~~~-~~~~~ll~~L~l~ 474 (627)
|.+..|.+. .+|...+...+|++|++..|++. ..|+. +.-... |..|+.+.|.+. ..|..- .....+ +.|.+.
T Consensus 292 l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~L-q~Lyla 367 (1081)
T KOG0618|consen 292 LSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLS-TLPSYEENNHAAL-QELYLA 367 (1081)
T ss_pred HHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhcccc-ccccccchhhHHH-HHHHHh
Confidence 999999988 56666777899999999999988 44443 333333 777888888777 444322 233444 788899
Q ss_pred CCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCcccc
Q 037951 475 ENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQI 554 (627)
Q Consensus 475 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~ 554 (627)
+|+++...-..+.+..+|+.|+|++|++.......+.++..|+.|+||||+++ .+|..+..+..|++|...+|.+. ..
T Consensus 368 nN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~f 445 (1081)
T KOG0618|consen 368 NNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SF 445 (1081)
T ss_pred cCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ec
Confidence 99998766666788889999999999987333445788899999999999988 46788888899999988888888 78
Q ss_pred chhcccCcCCeeeCcCCcccccCCCCCcc-CCCCccccccCCCCc
Q 037951 555 PIFLEALSLEYLNLSFNDFEGRLPTRGIF-ANASAISVGGCNRLC 598 (627)
Q Consensus 555 p~~~~~~~L~~L~ls~n~l~~~~p~~~~~-~~l~~l~~~~n~~l~ 598 (627)
|.......|+.+|+|.|.++...-....+ ++|++++++||+++.
T Consensus 446 Pe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 446 PELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred hhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccc
Confidence 84444444999999999987665444555 889999999998653
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=2.6e-35 Score=302.09 Aligned_cols=464 Identities=25% Similarity=0.306 Sum_probs=213.0
Q ss_pred CCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeee
Q 037951 72 LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLA 151 (627)
Q Consensus 72 l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 151 (627)
...+..|+++.|-+-...-+.+.+..+|+.|++++|.+. ..|..+..+++|+.|.++.|.+. ..|.+...+.+|+++.
T Consensus 20 ~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~ln 97 (1081)
T KOG0618|consen 20 NEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLN 97 (1081)
T ss_pred HHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhhe
Confidence 334555555555443211122333444566666655555 45555555556666666665555 4555555555666666
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCcc
Q 037951 152 LPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHG 231 (627)
Q Consensus 152 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 231 (627)
|..|.+. ..|..+..+++|++|+++.|.+. .+|..+..+..+..+..++|..... ++... ++.+++..|.+.+
T Consensus 98 L~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~ 170 (1081)
T KOG0618|consen 98 LKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGG 170 (1081)
T ss_pred eccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhccc
Confidence 6555555 45555555666666666666555 4455555555555555555511111 11111 4444444444444
Q ss_pred CCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCcc
Q 037951 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMG 311 (627)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 311 (627)
.++..... +.. .+++++|.+. ...+..+.+|+.+....|++..... .-++++.|+.++|.++....
T Consensus 171 ~~~~~i~~-l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~---- 236 (1081)
T KOG0618|consen 171 SFLIDIYN-LTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDV---- 236 (1081)
T ss_pred chhcchhh-hhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeecc----
Confidence 44433322 111 3555555443 1123344445555444444332211 12445555555554443111
Q ss_pred ccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcC
Q 037951 312 FMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGK 391 (627)
Q Consensus 312 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 391 (627)
-....+|+.+++++|+++ .+|+++..+. +|+.++..+|.++ .+|..+...++|+.|.+..|.+. .+|....+
T Consensus 237 ----~p~p~nl~~~dis~n~l~-~lp~wi~~~~-nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~ 308 (1081)
T KOG0618|consen 237 ----HPVPLNLQYLDISHNNLS-NLPEWIGACA-NLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEG 308 (1081)
T ss_pred ----ccccccceeeecchhhhh-cchHHHHhcc-cceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccc
Confidence 111234555555555555 3445544444 5555555555553 44444444555555555555554 33444444
Q ss_pred CCCCcEeeccCCcccccCChhh-hCCC-CCCEEEccCCccccccCh-hhcCCCCCCEEECcCCcCcccCCccccccccCc
Q 037951 392 LLNLQGLDFGGNHFSGEIPSTL-GNLS-SLYEIFLGDNNLSGVIPS-SLGNLERLAILEMFANELSGTIPGDIFNISSLS 468 (627)
Q Consensus 392 l~~L~~L~L~~n~~~~~~~~~~-~~~~-~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll 468 (627)
.++|+.|+|..|.+. .+|..+ .... +++.|+.+.|++.. .|. .=..+..|+.|++.+|.+.+..-.-+.+...+
T Consensus 309 ~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~-lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL- 385 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLST-LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL- 385 (1081)
T ss_pred cceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccc-cccccchhhHHHHHHHHhcCcccccchhhhccccce-
Confidence 555555555555554 223222 1111 13444444444431 111 01122334444555554444333334444444
Q ss_pred cEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCC
Q 037951 469 VSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRN 548 (627)
Q Consensus 469 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n 548 (627)
+.|++++|++.......+.++..|++|+||+|+++ .+|.++..++.|++|...+|.+.. .| .+..+++|+.+|+|.|
T Consensus 386 KVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 386 KVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCN 462 (1081)
T ss_pred eeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccc
Confidence 45555555444333333445555555555555554 444555555555555555555542 23 3444555555555555
Q ss_pred cCccc-cchhcccCcCCeeeCcCCc
Q 037951 549 NFFGQ-IPIFLEALSLEYLNLSFND 572 (627)
Q Consensus 549 ~l~~~-~p~~~~~~~L~~L~ls~n~ 572 (627)
.+... +|......+|++||+++|.
T Consensus 463 ~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 463 NLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhhhhCCCcccceeeccCCc
Confidence 55432 2222221225555555554
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=3e-34 Score=281.64 Aligned_cols=365 Identities=25% Similarity=0.408 Sum_probs=221.8
Q ss_pred CCCCCCCEEECCCCCCc-ccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCC
Q 037951 70 GNLSFLREINLMNNTIQ-GEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLK 148 (627)
Q Consensus 70 ~~l~~L~~L~Ls~~~~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~ 148 (627)
+-++.+|-+|+++|.++ +..|.....+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.||
T Consensus 4 gVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 4 GVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred cccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 34567888999999998 468888899999999999999888 88999999999999999999987 5566788889999
Q ss_pred eeeCCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCc-cccCCCCCcEEEeec
Q 037951 149 QLALPMNNLTG-GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPP-SIYNLSFLVIFSVSE 226 (627)
Q Consensus 149 ~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~ 226 (627)
.+.+.+|.+.. .+|..+..+..|..|||++|++. ..|..+...+++-.|+|++|+|. .+|. .+.+++.|-.||++.
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhcccc
Confidence 99999998853 67788888899999999999888 67888888888888888888887 4443 344677777777777
Q ss_pred ccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeeccccccc-ccCccCcCCCCCcCEEeccCccCCCC
Q 037951 227 NQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFF-GKLSVNFGGMKNLSYLILEYNNLGSG 305 (627)
Q Consensus 227 n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~ 305 (627)
|++. .+|+.+.. +..|++|.+++|.+....-..+..+++|+.|.+++.+-+ ..+|..+..+.+|+.++++.|++..
T Consensus 160 NrLe-~LPPQ~RR-L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~- 236 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRR-LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI- 236 (1255)
T ss_pred chhh-hcCHHHHH-HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-
Confidence 7775 45554443 555555555555444322223334444555555444322 2234444444455555555544443
Q ss_pred CCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccc-cc
Q 037951 306 ESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFT-GS 384 (627)
Q Consensus 306 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~ 384 (627)
++..+-++++|+.|++++|+++ .+......+. +|++|+++.|+++ .+|.+++.+++|+.|+..+|+++ .-
T Consensus 237 ------vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~-~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeG 307 (1255)
T KOG0444|consen 237 ------VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWE-NLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEG 307 (1255)
T ss_pred ------chHHHhhhhhhheeccCcCcee-eeeccHHHHh-hhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccC
Confidence 2233444444444444444444 2222222222 4444444444444 44444444444444444444433 12
Q ss_pred cchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCc
Q 037951 385 IPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANE 452 (627)
Q Consensus 385 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 452 (627)
+|..++.+.+|+.+..++|.+. ..|+.++.|..|+.|.++.|.+. .+|+++.-++.|+.|++..|.
T Consensus 308 iPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 308 IPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred CccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCc
Confidence 3444444444444444444443 44444444444444444444443 334444444444444444443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.3e-32 Score=270.22 Aligned_cols=366 Identities=26% Similarity=0.402 Sum_probs=225.2
Q ss_pred CCCCCEEECCCCCCC-CCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCce
Q 037951 168 LTSLEVVSLAGNPFG-GNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKL 246 (627)
Q Consensus 168 l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 246 (627)
++-.+-.|+++|.++ +..|.....+++++.|.|....+. .+|+.++.+.+|++|.++.|++. .+-..+.. +|.|+.
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~-Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSD-LPRLRS 82 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhcc-chhhHH
Confidence 334456778888887 466777777888888888887777 67888888888888888887776 22222222 666777
Q ss_pred eccCCccccc-cCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEE
Q 037951 247 FQTNENFFSG-SIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVL 325 (627)
Q Consensus 247 L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L 325 (627)
+.+..|.+.. .+|..+..+..|+.||+++|++. .+|..+...+++-.|++++|+|..++.. .+.++..|-.|
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~------lfinLtDLLfL 155 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNS------LFINLTDLLFL 155 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCch------HHHhhHhHhhh
Confidence 7777666542 45556666666667777766653 3444555666666666666666654432 34455566666
Q ss_pred EccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccc-cccchhhcCCCCCcEeeccCCc
Q 037951 326 SLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFT-GSIPKEMGKLLNLQGLDFGGNH 404 (627)
Q Consensus 326 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~ 404 (627)
++++|++. .+|..+..+. .|++|++++|.+.-.--..+..+++|+.|.+++.+-+ .-+|.++..+.+|..+|++.|.
T Consensus 156 DLS~NrLe-~LPPQ~RRL~-~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 156 DLSNNRLE-MLPPQIRRLS-MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred ccccchhh-hcCHHHHHHh-hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 66666665 5555555554 5666666666654322233444555666666655322 3455566666666666666666
Q ss_pred ccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCcccc-CCC
Q 037951 405 FSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVG-SIP 483 (627)
Q Consensus 405 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~-~~~ 483 (627)
+. ..|+.+.++++|+.|++++|+++ .+........+|++|+++.|++. .+|..++.++.+ +.|.+.+|+++- -+|
T Consensus 234 Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL-~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 234 LP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKL-TKLYANNNKLTFEGIP 309 (1255)
T ss_pred CC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHH-HHHHhccCcccccCCc
Confidence 65 55666666666666666666665 33333444555666666666666 666666666666 566666665532 345
Q ss_pred ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCc
Q 037951 484 PRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 484 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~ 551 (627)
..++.+.+|+.+..++|.+. ..|+.+..|..|+.|.|++|.+. .+|+++.-++.|+.||+..|+-.
T Consensus 310 SGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 310 SGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred cchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 55666666666666666665 56666666666666666666655 35666666666666666666555
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=1.4e-22 Score=232.99 Aligned_cols=346 Identities=21% Similarity=0.217 Sum_probs=199.6
Q ss_pred CcccCCCCCCCEEeCCCCc------CcccCCccccCCC-CCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCC
Q 037951 90 PLEFGRLRRLETLLLSDNS------LVGKIPANLSYCS-RLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIP 162 (627)
Q Consensus 90 ~~~~~~l~~L~~L~L~~n~------i~~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 162 (627)
+.+|.++++|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++.++.+. .++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 4557777888888775543 2234566666654 5788888777776 566665 4577888888887776 466
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCC
Q 037951 163 PFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFP 242 (627)
Q Consensus 163 ~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 242 (627)
..+..+++|+.|+++++.....+| .+..+++|++|++++|.....+|..+..+++|+.|++++|.....+|... .++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~ 704 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLK 704 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCC
Confidence 667777888888887765443454 36677788888887776655777777777888888887765555666544 366
Q ss_pred CCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccc-cccCCCCCc
Q 037951 243 NLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGF-MNSLANCSK 321 (627)
Q Consensus 243 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~l~~~~~ 321 (627)
+|+.|++++|...+.+|.. .++|+.|+++++.+.. .|..+ .+++|++|.+.++............ ......+++
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence 7777777776544444432 3567777777776543 33322 4566776666654322111000000 001112345
Q ss_pred ccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeecc
Q 037951 322 LQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFG 401 (627)
Q Consensus 322 L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 401 (627)
|+.|++++|.....+|..+..+. +|+.|++++|...+.+|..+ ++++|+.|++++|.....+|.. .++|+.|+++
T Consensus 780 L~~L~Ls~n~~l~~lP~si~~L~-~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls 854 (1153)
T PLN03210 780 LTRLFLSDIPSLVELPSSIQNLH-KLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLS 854 (1153)
T ss_pred chheeCCCCCCccccChhhhCCC-CCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECC
Confidence 56666666555545555555554 56666665554333444433 4555555665555433233321 2455555555
Q ss_pred CCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCc
Q 037951 402 GNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANE 452 (627)
Q Consensus 402 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 452 (627)
+|.+. .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 855 ~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 855 RTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 55555 445555555555555555544333444445555555555555553
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=3.9e-23 Score=237.61 Aligned_cols=341 Identities=21% Similarity=0.208 Sum_probs=271.7
Q ss_pred ccccCCCCCCCEEECCCCC------CcccCCcccCCCC-CCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCC
Q 037951 66 SPQIGNLSFLREINLMNNT------IQGEIPLEFGRLR-RLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIP 138 (627)
Q Consensus 66 ~~~l~~l~~L~~L~Ls~~~------~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 138 (627)
+..|..+++|++|.+..+. +...+|..|..++ +|+.|++.++.+. .+|..| ...+|++|++++|++. .++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 4568899999999997653 2334677777764 6999999999887 778777 5789999999999988 678
Q ss_pred ccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCC
Q 037951 139 FEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSF 218 (627)
Q Consensus 139 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 218 (627)
..+..+++|+.|+++++.....+|. ++.+++|++|++++|.....+|..+.++++|+.|++++|..-..+|..+ ++++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 8889999999999999875556664 8889999999999987766889999999999999999986655777765 7899
Q ss_pred CcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeeccccccc-------ccCccCcCCCCC
Q 037951 219 LVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFF-------GKLSVNFGGMKN 291 (627)
Q Consensus 219 L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-------~~~~~~l~~l~~ 291 (627)
|+.|++++|.....+|.. ..+|++|+++++.+. .+|..+ .+++|++|.+.++... ...+......++
T Consensus 706 L~~L~Lsgc~~L~~~p~~----~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~s 779 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI----STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPS 779 (1153)
T ss_pred CCEEeCCCCCCccccccc----cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhcccc
Confidence 999999999766666643 578999999999876 455544 5788888888764321 112222334578
Q ss_pred cCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCC
Q 037951 292 LSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNL 371 (627)
Q Consensus 292 L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 371 (627)
|+.|++++|.... .++..+.++++|+.|++++|...+.+|... .+. +|+.|++++|.....+|.. .++|
T Consensus 780 L~~L~Ls~n~~l~------~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~-sL~~L~Ls~c~~L~~~p~~---~~nL 848 (1153)
T PLN03210 780 LTRLFLSDIPSLV------ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLE-SLESLDLSGCSRLRTFPDI---STNI 848 (1153)
T ss_pred chheeCCCCCCcc------ccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccc-ccCEEECCCCCcccccccc---cccc
Confidence 9999999986544 456678899999999999987655777665 344 8999999998665555543 4689
Q ss_pred CEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCcc
Q 037951 372 YSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNL 429 (627)
Q Consensus 372 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 429 (627)
+.|++++|.++ .+|..+..+++|+.|++++|.-...+|.....+++|+.+++++|.-
T Consensus 849 ~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 849 SDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence 99999999998 6788899999999999999765556777788899999999999973
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=3.1e-26 Score=214.16 Aligned_cols=446 Identities=21% Similarity=0.176 Sum_probs=255.3
Q ss_pred ceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccC-
Q 037951 52 ITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGN- 130 (627)
Q Consensus 52 ~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~- 130 (627)
...|+++.+++.+ |..+. .....++|..|+|+...+.+|..+++||.|||++|+|+.+-|++|.++++|..|.+-+
T Consensus 49 ~~VdCr~~GL~eV-P~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 49 GIVDCRGKGLTEV-PANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred ceEEccCCCcccC-cccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 4446677776654 32222 3567899999999987888999999999999999999999999999999988887766
Q ss_pred ccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCC
Q 037951 131 NKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIP 210 (627)
Q Consensus 131 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 210 (627)
|+|+......|+++..|+.|.+.-|++.....+.|..+++|..|.+.+|.+..+-...|..+..++++.+..|.+..
T Consensus 126 NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic--- 202 (498)
T KOG4237|consen 126 NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC--- 202 (498)
T ss_pred CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc---
Confidence 89997777889999999999999999998888889999999999999999984444488999999999998887431
Q ss_pred ccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCC-CCCcEeecccccccccCc-cCcCC
Q 037951 211 PSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNA-SKLEYVEIASNSFFGKLS-VNFGG 288 (627)
Q Consensus 211 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~-~~l~~ 288 (627)
..+++.+..........++ + ..-.....+.+..+...-+..+... ..+..--.+.+......| ..|++
T Consensus 203 --dCnL~wla~~~a~~~iets-----g---arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~ 272 (498)
T KOG4237|consen 203 --DCNLPWLADDLAMNPIETS-----G---ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK 272 (498)
T ss_pred --ccccchhhhHHhhchhhcc-----c---ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh
Confidence 2233332221110000000 0 0000011111111110001111000 011100111111112222 23677
Q ss_pred CCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCC
Q 037951 289 MKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNL 368 (627)
Q Consensus 289 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 368 (627)
+++|++|++++|.++.+... +|.+...+++|++..|++...-..+|.++. .|+.|++.+|+++...|.+|..+
T Consensus 273 L~~L~~lnlsnN~i~~i~~~------aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls-~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 273 LPNLRKLNLSNNKITRIEDG------AFEGAAELQELYLTRNKLEFVSSGMFQGLS-GLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred cccceEeccCCCccchhhhh------hhcchhhhhhhhcCcchHHHHHHHhhhccc-cceeeeecCCeeEEEeccccccc
Confidence 77777777777777765543 566667777777777777655455555554 67777777777776677777777
Q ss_pred CCCCEEeCCCCcccccc-chhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEE
Q 037951 369 VNLYSLQTEENQFTGSI-PKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILE 447 (627)
Q Consensus 369 ~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 447 (627)
.+|.+|.+-.|.+.-.- -.+++.+ +......+ .|. -++...++.+.+++..+...--+ .=+++
T Consensus 346 ~~l~~l~l~~Np~~CnC~l~wl~~W-------lr~~~~~~-~~~-Cq~p~~~~~~~~~dv~~~~~~c~------~~ee~- 409 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFNCNCRLAWLGEW-------LRKKSVVG-NPR-CQSPGFVRQIPISDVAFGDFRCG------GPEEL- 409 (498)
T ss_pred ceeeeeehccCcccCccchHHHHHH-------HhhCCCCC-CCC-CCCCchhccccchhccccccccC------Ccccc-
Confidence 77777777666554110 0111111 11122111 111 12233556666666554321100 00000
Q ss_pred CcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCccc
Q 037951 448 MFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFN 527 (627)
Q Consensus 448 l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 527 (627)
+|.-.+.-|. .++-+-+....++..+ ..+|..+. ...++|.+.+|.++ .+|.. .+.+| .+++++|+++
T Consensus 410 --~~~~s~~cP~---~c~c~~tVvRcSnk~l-k~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~ 477 (498)
T KOG4237|consen 410 --GCLTSSPCPP---PCTCLDTVVRCSNKLL-KLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRIS 477 (498)
T ss_pred --CCCCCCCCCC---CcchhhhhHhhcccch-hhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCcee
Confidence 0111111111 1122211122222222 23443332 34456677777776 55655 44566 6777777776
Q ss_pred ccCChhccCCCCCCEEECCCC
Q 037951 528 GFIPSFFRTSRGIRKVDLSRN 548 (627)
Q Consensus 528 ~~~~~~l~~l~~L~~L~ls~n 548 (627)
...-..|.++++|.+|-+++|
T Consensus 478 ~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 478 SLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhhcccccchhhhheeEEecC
Confidence 655566777777777777765
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.90 E-value=7.2e-26 Score=211.74 Aligned_cols=427 Identities=19% Similarity=0.211 Sum_probs=244.0
Q ss_pred EECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCC-CC
Q 037951 78 INLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPM-NN 156 (627)
Q Consensus 78 L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~-n~ 156 (627)
+|-++-+++ .+|..+. +.-..++|..|+|+.+.|.+|+.+++|++||||+|.|+.+.|.+|.++.+|..|-+.+ |+
T Consensus 51 VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 555666666 5666554 4668899999999988888999999999999999999999999999999988887766 89
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChh
Q 037951 157 LTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPS 236 (627)
Q Consensus 157 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 236 (627)
|+......|+++.+|+.|.+.-|++.....+.|..++++..|.+..|.+...-...+..+..++.+.+..|.+...
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icd---- 203 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICD---- 203 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccc----
Confidence 9966667799999999999999999988888899999999999999988844444777788888887777664311
Q ss_pred hhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccC
Q 037951 237 LGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSL 316 (627)
Q Consensus 237 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 316 (627)
-+|+.+ ... ....+..+++.....-..+.+.++...... .+..
T Consensus 204 -----CnL~wl---------------------a~~-------~a~~~ietsgarc~~p~rl~~~Ri~q~~a~--kf~c-- 246 (498)
T KOG4237|consen 204 -----CNLPWL---------------------ADD-------LAMNPIETSGARCVSPYRLYYKRINQEDAR--KFLC-- 246 (498)
T ss_pred -----cccchh---------------------hhH-------HhhchhhcccceecchHHHHHHHhcccchh--hhhh--
Confidence 111111 000 000111122222222222222222221111 0000
Q ss_pred CCCCcccEEEccCcccccccchh-HHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCC
Q 037951 317 ANCSKLQVLSLGGNQFRGALPHS-IANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNL 395 (627)
Q Consensus 317 ~~~~~L~~L~l~~n~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 395 (627)
....+..-..+.+...+..|.. |..++ +|++|++++|++++.-+.+|.+...+++|++..|++...-...|.++..|
T Consensus 247 -~~esl~s~~~~~d~~d~~cP~~cf~~L~-~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L 324 (498)
T KOG4237|consen 247 -SLESLPSRLSSEDFPDSICPAKCFKKLP-NLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGL 324 (498)
T ss_pred -hHHhHHHhhccccCcCCcChHHHHhhcc-cceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccc
Confidence 0001100011112222233322 22222 55555555555555555555555555555555555554444455555555
Q ss_pred cEeeccCCcccccCChhhhCCCCCCEEEccCCcccc-----ccChhhcCCCCCCEEECcCCcCcccCCccccccccCccE
Q 037951 396 QGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSG-----VIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVS 470 (627)
Q Consensus 396 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~-----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~ 470 (627)
+.|+|.+|+|+...|.+|....+|.+|++-.|++-- ...++++.- ... ..| -++-+..++.
T Consensus 325 ~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~-----------~~~-~~~--~Cq~p~~~~~ 390 (498)
T KOG4237|consen 325 KTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKK-----------SVV-GNP--RCQSPGFVRQ 390 (498)
T ss_pred eeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhC-----------CCC-CCC--CCCCCchhcc
Confidence 556666666555555555555555555555444310 011111110 000 000 0000111123
Q ss_pred EEccCCcccc---CCCc---------cccCCCCCCEE-EccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCC
Q 037951 471 LDLAENHFVG---SIPP---------RIGNLKALRCF-DVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTS 537 (627)
Q Consensus 471 L~l~~n~l~~---~~~~---------~l~~l~~L~~L-~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l 537 (627)
+.+++..+.. ..|+ .=..++.+.++ ..|+..++ .+|..+. ..-.+|++.+|.++. +|.. .+
T Consensus 391 ~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~~-vp~~--~~ 464 (498)
T KOG4237|consen 391 IPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAITS-VPDE--LL 464 (498)
T ss_pred ccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhcc-cCHH--HH
Confidence 3333332211 0111 11223444433 34444444 6666554 356789999999985 4544 56
Q ss_pred CCCCEEECCCCcCccccchhcccCc-CCeeeCcCC
Q 037951 538 RGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFN 571 (627)
Q Consensus 538 ~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n 571 (627)
.+| .+|+++|+++..-...+.+++ |.+|-+++|
T Consensus 465 ~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 465 RSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 778 899999999865556677777 888877765
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=4e-19 Score=189.68 Aligned_cols=113 Identities=26% Similarity=0.376 Sum_probs=58.9
Q ss_pred CCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCC
Q 037951 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPM 154 (627)
Q Consensus 75 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 154 (627)
-..|+++++.++ .+|..+. ++|+.|++++|+++ .+|. ..++|++|++++|+++ .+|.. .++|+.|++++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 445666666665 4555554 35666666666666 3443 2355666666666665 33322 24555666666
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCcccc
Q 037951 155 NNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLS 206 (627)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 206 (627)
|.+. .+|.. ..+|+.|++++|+++. +|.. .++|+.|++++|.++
T Consensus 272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~~---p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 272 NPLT-HLPAL---PSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA 315 (788)
T ss_pred Cchh-hhhhc---hhhcCEEECcCCcccc-cccc---ccccceeECCCCccc
Confidence 6554 23321 1345555555555552 3321 244555555555554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=4.2e-19 Score=189.47 Aligned_cols=261 Identities=25% Similarity=0.255 Sum_probs=156.2
Q ss_pred eeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEE
Q 037951 246 LFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVL 325 (627)
Q Consensus 246 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L 325 (627)
.|+++.+.++ .+|..+. ++|+.|++.+|.++.. |. ..++|++|++++|.++.++. ..++|+.|
T Consensus 205 ~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsLP~----------lp~sL~~L 267 (788)
T PRK15387 205 VLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSLPV----------LPPGLLEL 267 (788)
T ss_pred EEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCcccC----------ccccccee
Confidence 4444444444 3343332 2556666666655442 21 23566777777776665321 12466777
Q ss_pred EccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcc
Q 037951 326 SLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHF 405 (627)
Q Consensus 326 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~ 405 (627)
++++|.+. .+|. .+.+|+.|++++|+++. +|. ..++|+.|++++|++++ +|.. ..+|+.|++++|.+
T Consensus 268 ~Ls~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L 334 (788)
T PRK15387 268 SIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQL 334 (788)
T ss_pred eccCCchh-hhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcc
Confidence 77777665 3332 22356777777777663 333 23567777777777763 3332 23566777777777
Q ss_pred cccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCcc
Q 037951 406 SGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPR 485 (627)
Q Consensus 406 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~ 485 (627)
+ .+|.. ..+|+.|++++|++++ +|.. ..+|+.|++++|.+. .+|... ..+ +.|++++|++.+ +|..
T Consensus 335 ~-~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l~---~~L-~~LdLs~N~Lt~-LP~l 400 (788)
T PRK15387 335 T-SLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPALP---SGL-KELIVSGNRLTS-LPVL 400 (788)
T ss_pred c-ccccc---ccccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCcccc---ccc-ceEEecCCcccC-CCCc
Confidence 6 34431 2467777777777773 4432 345677777777776 455432 234 677777777763 4432
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhc
Q 037951 486 IGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFL 558 (627)
Q Consensus 486 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~ 558 (627)
.++|+.|++++|.++ .+|.. ..+|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+
T Consensus 401 ---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 401 ---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred ---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 256777888888776 46643 245677788888877 467777777788888888888877666554
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.76 E-value=2.1e-19 Score=180.16 Aligned_cols=90 Identities=23% Similarity=0.319 Sum_probs=41.5
Q ss_pred ccCCCCCCEEeCCCCccccccchhhcCCCC---CcEeeccCCcccc----cCChhhhCC-CCCCEEEccCCccccc----
Q 037951 365 IGNLVNLYSLQTEENQFTGSIPKEMGKLLN---LQGLDFGGNHFSG----EIPSTLGNL-SSLYEIFLGDNNLSGV---- 432 (627)
Q Consensus 365 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~---L~~L~L~~n~~~~----~~~~~~~~~-~~L~~L~l~~n~~~~~---- 432 (627)
+..+++|+.|++++|.+....+..+..+.. |+.|++++|++.+ .+...+..+ ++|+.|++++|.+++.
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 156 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA 156 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence 344555555555555554333333333333 5555555555542 111223333 5555555555555421
Q ss_pred cChhhcCCCCCCEEECcCCcCc
Q 037951 433 IPSSLGNLERLAILEMFANELS 454 (627)
Q Consensus 433 ~~~~l~~l~~L~~L~l~~n~l~ 454 (627)
++..+..+++|+.|++++|.+.
T Consensus 157 ~~~~~~~~~~L~~L~l~~n~l~ 178 (319)
T cd00116 157 LAKALRANRDLKELNLANNGIG 178 (319)
T ss_pred HHHHHHhCCCcCEEECcCCCCc
Confidence 1223334445555555555544
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=3.1e-19 Score=178.94 Aligned_cols=250 Identities=24% Similarity=0.233 Sum_probs=176.6
Q ss_pred cccEEEeecccccc----cCcccccCCCCCCEEeCCCCccc------cccchhhcCCCCCcEeeccCCcccccCChhhhC
Q 037951 346 QLQILVLGTNQLYG----SIPSGIGNLVNLYSLQTEENQFT------GSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGN 415 (627)
Q Consensus 346 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~------~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 415 (627)
.++.++++++.+++ .++..+...+.++.++++++.+. ..++..+..+++|+.|++++|.+.+..+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 45555555555432 13334445566777777766554 234456777899999999999998666666655
Q ss_pred CCC---CCEEEccCCcccc----ccChhhcCC-CCCCEEECcCCcCccc----CCccccccccCccEEEccCCccccC--
Q 037951 416 LSS---LYEIFLGDNNLSG----VIPSSLGNL-ERLAILEMFANELSGT----IPGDIFNISSLSVSLDLAENHFVGS-- 481 (627)
Q Consensus 416 ~~~---L~~L~l~~n~~~~----~~~~~l~~l-~~L~~L~l~~n~l~~~----~~~~~~~~~~ll~~L~l~~n~l~~~-- 481 (627)
+.. |++|++++|.++. .+...+..+ ++|+.|++++|.+.+. ++..+..+..+ ++|++++|.+.+.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~ 182 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDL-KELNLANNGIGDAGI 182 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCc-CEEECcCCCCchHHH
Confidence 555 9999999999873 223345666 8999999999998742 33345555677 8999999998742
Q ss_pred --CCccccCCCCCCEEEccCCccccc----CCccccCCCCCCEEECCCCcccccCChhcc-----CCCCCCEEECCCCcC
Q 037951 482 --IPPRIGNLKALRCFDVSNNDLSGE----IPSELGLCSSLEEIYLAENFFNGFIPSFFR-----TSRGIRKVDLSRNNF 550 (627)
Q Consensus 482 --~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~ls~n~l 550 (627)
++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++.....+. ..+.|++|++++|.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 233455668999999999998633 344567789999999999999864332222 247999999999998
Q ss_pred cc----ccchhcccCc-CCeeeCcCCccccc----CCC-CCcc-CCCCccccccCCC
Q 037951 551 FG----QIPIFLEALS-LEYLNLSFNDFEGR----LPT-RGIF-ANASAISVGGCNR 596 (627)
Q Consensus 551 ~~----~~p~~~~~~~-L~~L~ls~n~l~~~----~p~-~~~~-~~l~~l~~~~n~~ 596 (627)
+. .+...+.... |+++++++|++... +.. ...+ +.++.+++.+||+
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 72 3444455555 99999999999854 221 2334 6789999999874
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=5.1e-18 Score=182.55 Aligned_cols=223 Identities=22% Similarity=0.366 Sum_probs=111.3
Q ss_pred CCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhcccc
Q 037951 267 KLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQ 346 (627)
Q Consensus 267 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~ 346 (627)
+...|+++++.++.. |..+ .+.++.|++++|.++.++. .+ +++|+.|++++|+++ .+|..+. .+
T Consensus 179 ~~~~L~L~~~~LtsL-P~~I--p~~L~~L~Ls~N~LtsLP~-------~l--~~nL~~L~Ls~N~Lt-sLP~~l~---~~ 242 (754)
T PRK15370 179 NKTELRLKILGLTTI-PACI--PEQITTLILDNNELKSLPE-------NL--QGNIKTLYANSNQLT-SIPATLP---DT 242 (754)
T ss_pred CceEEEeCCCCcCcC-Cccc--ccCCcEEEecCCCCCcCCh-------hh--ccCCCEEECCCCccc-cCChhhh---cc
Confidence 456677777666543 3322 2467777777777665332 11 136677777777666 4454332 25
Q ss_pred ccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccC
Q 037951 347 LQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGD 426 (627)
Q Consensus 347 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 426 (627)
|+.|++++|.+. .+|..+. .+|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++
T Consensus 243 L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 243 IQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQS 313 (754)
T ss_pred ccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcC
Confidence 666666666665 3444332 35666666666665 3444332 35666666666655 2333221 3455566666
Q ss_pred CccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccC
Q 037951 427 NNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEI 506 (627)
Q Consensus 427 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 506 (627)
|.++. +|..+ .++|+.|++++|.+. .+|..+. +++ +.|++++|++. .+|..+. ++|++|++++|+++ .+
T Consensus 314 N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL-~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~L 382 (754)
T PRK15370 314 NSLTA-LPETL--PPGLKTLEAGENALT-SLPASLP--PEL-QVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NL 382 (754)
T ss_pred Ccccc-CCccc--cccceeccccCCccc-cCChhhc--Ccc-cEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CC
Confidence 65552 33222 235555555555554 2443322 233 44555555444 2333221 34445555555444 33
Q ss_pred CccccCCCCCCEEECCCCccc
Q 037951 507 PSELGLCSSLEEIYLAENFFN 527 (627)
Q Consensus 507 ~~~l~~l~~L~~L~L~~n~i~ 527 (627)
|..+. ..|+.|++++|+++
T Consensus 383 P~~l~--~sL~~LdLs~N~L~ 401 (754)
T PRK15370 383 PENLP--AALQIMQASRNNLV 401 (754)
T ss_pred CHhHH--HHHHHHhhccCCcc
Confidence 33332 23444444554444
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=3.4e-18 Score=183.87 Aligned_cols=246 Identities=24% Similarity=0.411 Sum_probs=159.4
Q ss_pred CCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCC
Q 037951 290 KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLV 369 (627)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 369 (627)
.+...|+++++.++.++. .+ .+.++.|++++|+++ .+|..+. .+|+.|++++|+++ .+|..+. .
T Consensus 178 ~~~~~L~L~~~~LtsLP~-------~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~ 241 (754)
T PRK15370 178 NNKTELRLKILGLTTIPA-------CI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--D 241 (754)
T ss_pred cCceEEEeCCCCcCcCCc-------cc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--c
Confidence 356778888877776432 12 246788888888887 5565443 27888888888877 4454443 4
Q ss_pred CCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECc
Q 037951 370 NLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMF 449 (627)
Q Consensus 370 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 449 (627)
+|+.|++++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|++++ +|..+. ++|+.|+++
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls 312 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQ 312 (754)
T ss_pred cccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhc
Confidence 6788888888777 5565553 46888888888777 4555442 478888888887773 444332 367777777
Q ss_pred CCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCccccc
Q 037951 450 ANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGF 529 (627)
Q Consensus 450 ~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~ 529 (627)
+|.+. .+|..+. .++ +.|++++|.+.+ +|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|.++.
T Consensus 313 ~N~Lt-~LP~~l~--~sL-~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt~- 381 (754)
T PRK15370 313 SNSLT-ALPETLP--PGL-KTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALTN- 381 (754)
T ss_pred CCccc-cCCcccc--ccc-eeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCCC-
Confidence 77776 4554332 344 777777777764 454443 57777777777776 5665443 577777777777774
Q ss_pred CChhccCCCCCCEEECCCCcCccccch----hcccCc-CCeeeCcCCccc
Q 037951 530 IPSFFRTSRGIRKVDLSRNNFFGQIPI----FLEALS-LEYLNLSFNDFE 574 (627)
Q Consensus 530 ~~~~l~~l~~L~~L~ls~n~l~~~~p~----~~~~~~-L~~L~ls~n~l~ 574 (627)
+|..+. ..|+.|++++|.+. .+|. .....+ +..+++.+|+++
T Consensus 382 LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 382 LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 444443 35777777777776 3443 222323 677777777775
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.72 E-value=1e-19 Score=151.11 Aligned_cols=164 Identities=31% Similarity=0.509 Sum_probs=145.5
Q ss_pred cCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCC
Q 037951 69 IGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLK 148 (627)
Q Consensus 69 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~ 148 (627)
+.++.+++.|.||+|+++ .+|..+..+.+|+.|++++|+++ .+|.+++.+++|+.|+++-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 446778899999999998 67778999999999999999998 88999999999999999999988 8999999999999
Q ss_pred eeeCCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecc
Q 037951 149 QLALPMNNLTG-GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSEN 227 (627)
Q Consensus 149 ~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 227 (627)
.||+.+|.+.. .+|..|..++.|+-|++++|.+. .+|..++++++|+.|.+..|.+- .+|..++.++.|+.|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 99999998865 77888999999999999999999 78888999999999999999887 78889999999999999999
Q ss_pred cCccCCChhhh
Q 037951 228 QMHGSLPPSLG 238 (627)
Q Consensus 228 ~l~~~~~~~~~ 238 (627)
+++ .+|..++
T Consensus 184 rl~-vlppel~ 193 (264)
T KOG0617|consen 184 RLT-VLPPELA 193 (264)
T ss_pred eee-ecChhhh
Confidence 887 5555443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=9.5e-18 Score=139.54 Aligned_cols=180 Identities=27% Similarity=0.542 Sum_probs=135.5
Q ss_pred cCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCE
Q 037951 366 GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAI 445 (627)
Q Consensus 366 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 445 (627)
.++..++.|.+++|+++ .+|..+..+.+|+.|++.+|++. .+|..++.+++|+.|++.-|++. ..|..|+.++.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34556677777777777 55666777788888888888877 66777777888888888877776 67778888888888
Q ss_pred EECcCCcCc-ccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCC
Q 037951 446 LEMFANELS-GTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAEN 524 (627)
Q Consensus 446 L~l~~n~l~-~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 524 (627)
|++.+|.+. ..+|..|+.+..+ +.|++++|.+. .+|..++++++|+.|.+.+|.+. .+|..++.++.|++|.+.+|
T Consensus 107 ldltynnl~e~~lpgnff~m~tl-ralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTL-RALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhccccccccccCCcchhHHHHH-HHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccc
Confidence 888887764 3678888888888 88899999887 77888899999999999999887 88888999999999999999
Q ss_pred cccccCChhccCCC---CCCEEECCCCcCcc
Q 037951 525 FFNGFIPSFFRTSR---GIRKVDLSRNNFFG 552 (627)
Q Consensus 525 ~i~~~~~~~l~~l~---~L~~L~ls~n~l~~ 552 (627)
.++...|+ ++++. +=+.+.+.+|+...
T Consensus 184 rl~vlppe-l~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 184 RLTVLPPE-LANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred eeeecChh-hhhhhhhhhHHHHhhhhCCCCC
Confidence 98854443 44321 22333444555443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.43 E-value=8.7e-13 Score=142.00 Aligned_cols=156 Identities=32% Similarity=0.491 Sum_probs=124.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCC-----CcccceeecCCCCcceecccccCCCCCCCEEECCCCCCc
Q 037951 12 AAFEEGDLAALQAFKSMISHDPQGILNSWNDSRHFC-----EWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQ 86 (627)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c-----~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~ 86 (627)
++..++|.++|..+|.++. ++. ..+|... .| .|.|+.|+..... ....++.|+|++|.+.
T Consensus 367 ~~t~~~~~~aL~~~k~~~~-~~~--~~~W~g~--~C~p~~~~w~Gv~C~~~~~~----------~~~~v~~L~L~~n~L~ 431 (623)
T PLN03150 367 SKTLLEEVSALQTLKSSLG-LPL--RFGWNGD--PCVPQQHPWSGADCQFDSTK----------GKWFIDGLGLDNQGLR 431 (623)
T ss_pred cccCchHHHHHHHHHHhcC-Ccc--cCCCCCC--CCCCcccccccceeeccCCC----------CceEEEEEECCCCCcc
Confidence 3446678999999999985 332 2478643 44 6999999542210 1124788999999999
Q ss_pred ccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCC
Q 037951 87 GEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLG 166 (627)
Q Consensus 87 ~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 166 (627)
+.+|..+..+++|+.|+|++|.+.+.+|..++.+++|+.|++++|++.+.+|..++.+++|++|++++|.+.+.+|..+.
T Consensus 432 g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511 (623)
T ss_pred ccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHh
Confidence 99999999999999999999999989999999999999999999999988999999999999999999999888888776
Q ss_pred CC-CCCCEEECCCCCCC
Q 037951 167 NL-TSLEVVSLAGNPFG 182 (627)
Q Consensus 167 ~l-~~L~~L~L~~n~~~ 182 (627)
.. .++..+++.+|...
T Consensus 512 ~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 512 GRLLHRASFNFTDNAGL 528 (623)
T ss_pred hccccCceEEecCCccc
Confidence 53 45667777777543
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.24 E-value=5.4e-13 Score=131.84 Aligned_cols=192 Identities=24% Similarity=0.370 Sum_probs=135.6
Q ss_pred ccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccC
Q 037951 347 LQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGD 426 (627)
Q Consensus 347 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 426 (627)
-...+++.|++. .+|..++.+..|..+.+..|.+. .+|.++..+..|+.+||+.|++. .+|..++.++ |+.|.+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEec
Confidence 445677777776 66777777777777777777777 67777777788888888888877 6666666554 77777778
Q ss_pred CccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccC
Q 037951 427 NNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEI 506 (627)
Q Consensus 427 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 506 (627)
|+++ .+|+.++..+.|..|+.+.|.+. ++|..+..+.++ +.|.+..|++. .+|+.+.. -.|..||+|+|++. .+
T Consensus 153 Nkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~sl-r~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~i 226 (722)
T KOG0532|consen 153 NKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSL-RDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YL 226 (722)
T ss_pred Cccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHH-HHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ec
Confidence 7777 66777777777777888887777 777777777777 77777777776 45555553 34677777777776 77
Q ss_pred CccccCCCCCCEEECCCCcccccCChhc---cCCCCCCEEECCCCc
Q 037951 507 PSELGLCSSLEEIYLAENFFNGFIPSFF---RTSRGIRKVDLSRNN 549 (627)
Q Consensus 507 ~~~l~~l~~L~~L~L~~n~i~~~~~~~l---~~l~~L~~L~ls~n~ 549 (627)
|-+|..++.|++|-|.+|.++ ..|..+ +...-.|+|+..-|+
T Consensus 227 Pv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 227 PVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred chhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 777777777777777777776 344333 223445666666663
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.23 E-value=2.8e-13 Score=133.80 Aligned_cols=197 Identities=24% Similarity=0.392 Sum_probs=158.7
Q ss_pred CCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCc
Q 037951 317 ANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQ 396 (627)
Q Consensus 317 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 396 (627)
..+..-...+++.|++. ++|..+..+. .|+.+.+..|.+. .+|..+.++..|..++++.|++. .+|..++.++ |+
T Consensus 72 ~~ltdt~~aDlsrNR~~-elp~~~~~f~-~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lk 146 (722)
T KOG0532|consen 72 YDLTDTVFADLSRNRFS-ELPEEACAFV-SLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LK 146 (722)
T ss_pred ccccchhhhhccccccc-cCchHHHHHH-HHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ce
Confidence 34455567888889888 7787777766 7888888888887 78888999999999999999988 6677777664 88
Q ss_pred EeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCC
Q 037951 397 GLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAEN 476 (627)
Q Consensus 397 ~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n 476 (627)
.|-+++|+++ .+|..++..+.|..||.+.|.+. .+|..+.++.+|+.|.++.|++. .+|..+. ...+ ..||+++|
T Consensus 147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpL-i~lDfScN 221 (722)
T KOG0532|consen 147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPL-IRLDFSCN 221 (722)
T ss_pred eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCce-eeeecccC
Confidence 9999999988 77887888889999999999988 66778888999999999999988 7888777 4456 68999999
Q ss_pred ccccCCCccccCCCCCCEEEccCCcccccCCcccc---CCCCCCEEECCCCc
Q 037951 477 HFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELG---LCSSLEEIYLAENF 525 (627)
Q Consensus 477 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~---~l~~L~~L~L~~n~ 525 (627)
++. .+|.+|.+|+.|++|-|.+|.+. ..|..+. ...--++|+...+.
T Consensus 222 kis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 222 KIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 987 78888999999999999999997 5555543 23334567776664
No 26
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.18 E-value=4e-11 Score=123.70 Aligned_cols=195 Identities=31% Similarity=0.489 Sum_probs=93.4
Q ss_pred EEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCC-CCCEEeCCCCccccccchhhcCCCCCcEeeccC
Q 037951 324 VLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLV-NLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGG 402 (627)
Q Consensus 324 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 402 (627)
.++...+.+..... .+.... .++.|++.+|.++ .++....... +|+.|++++|.+. .++..+..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~-~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELT-NLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccCch-hhhccc-ceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence 45666655532211 122222 4666666666665 3333344442 5666666666655 3334455556666666666
Q ss_pred CcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCC
Q 037951 403 NHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSI 482 (627)
Q Consensus 403 n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~ 482 (627)
|++. .++......+.|+.|++++|++. .+|........|+++.++.|+.. ..+..
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~---------------------- 227 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSS---------------------- 227 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchh----------------------
Confidence 6655 33333334555555556555555 33433333334555555555322 22333
Q ss_pred CccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccc
Q 037951 483 PPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQ 553 (627)
Q Consensus 483 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~ 553 (627)
+.++.++..+.+++|++. ..+..++.++.++.|++++|.++...+ +..+.+++.|++++|.+...
T Consensus 228 ---~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 228 ---LSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ---hhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 344444444444444443 223444444445555555555543322 44445555555555544433
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.16 E-value=6.9e-11 Score=121.94 Aligned_cols=199 Identities=37% Similarity=0.529 Sum_probs=142.5
Q ss_pred CEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCC
Q 037951 293 SYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLY 372 (627)
Q Consensus 293 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 372 (627)
..++...+.+... ...+...+.++.|++.+|.++ .++.......++|+.|++++|++. .++..+..++.|+
T Consensus 96 ~~l~~~~~~~~~~-------~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~ 166 (394)
T COG4886 96 PSLDLNLNRLRSN-------ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLK 166 (394)
T ss_pred ceeeccccccccC-------chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhcccccc
Confidence 4577777766331 223445578999999999998 444444433127999999999998 5556788999999
Q ss_pred EEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCc
Q 037951 373 SLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANE 452 (627)
Q Consensus 373 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 452 (627)
.|++++|++. .++...+..++|+.|++++|++. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|+
T Consensus 167 ~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 167 NLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred ccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCce
Confidence 9999999998 56665557899999999999998 66665556677999999999755 456678888888888888887
Q ss_pred CcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCC
Q 037951 453 LSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIP 507 (627)
Q Consensus 453 l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 507 (627)
+. .++..+..+..+ ++|++++|.+..... +..+.++++|++++|.+....+
T Consensus 244 ~~-~~~~~~~~l~~l-~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 244 LE-DLPESIGNLSNL-ETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ee-eccchhcccccc-ceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 76 334444555554 666666666653222 5556666666666666653333
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.15 E-value=6.5e-11 Score=127.60 Aligned_cols=116 Identities=31% Similarity=0.501 Sum_probs=78.9
Q ss_pred CCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcC
Q 037951 492 LRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSF 570 (627)
Q Consensus 492 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~ 570 (627)
++.|+|++|.+.+.+|..++.+++|+.|+|++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+. |+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 55667777777666777777777777777777777767776677777777777777777777777666666 77777777
Q ss_pred CcccccCCCC--CccCCCCccccccCCCCcccCCCCCCCCCC
Q 037951 571 NDFEGRLPTR--GIFANASAISVGGCNRLCGGIHELQLPKCP 610 (627)
Q Consensus 571 n~l~~~~p~~--~~~~~l~~l~~~~n~~l~~~~~~l~i~~c~ 610 (627)
|++.|.+|.. ..+..+..+++.+|+.+||. |. +..|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~-p~--l~~C~ 538 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGI-PG--LRACG 538 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCccccCC-CC--CCCCc
Confidence 7777777742 22344566778888888874 33 34563
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=1.4e-11 Score=112.35 Aligned_cols=203 Identities=21% Similarity=0.280 Sum_probs=99.5
Q ss_pred ccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCC-ccccccchhhcCC
Q 037951 314 NSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEEN-QFTGSIPKEMGKL 392 (627)
Q Consensus 314 ~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l 392 (627)
..+.-+++|+++.++.|.-..+. .+....+.|+++.+.+..++. .| .+-....+....-..- -.+|.....+..+
T Consensus 208 f~l~~f~~l~~~~~s~~~~~~i~--~~~~~kptl~t~~v~~s~~~~-~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 208 FNLNAFRNLKTLKFSALSTENIV--DIELLKPTLQTICVHNTTIQD-VP-SLLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred cchHHhhhhheeeeeccchhhee--ceeecCchhheeeeecccccc-cc-cccchhhhcCccCCCCCccCCceEEecchH
Confidence 34455677777777776433111 112223467777776654432 11 1111122222222111 1223333344456
Q ss_pred CCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEE
Q 037951 393 LNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLD 472 (627)
Q Consensus 393 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~ 472 (627)
+.|+.+|+++|.|+ .+.+...-.|.++.|++++|.+... ..++.+++|+.|++++|.+. .+...-..+-.. ++|.
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI-KtL~ 358 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI-KTLK 358 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCE-eeee
Confidence 67888888888887 5555566677888888888887733 23677777777777777665 222222222222 4444
Q ss_pred ccCCccccCCCccccCCCCCCEEEccCCccccc-CCccccCCCCCCEEECCCCccc
Q 037951 473 LAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE-IPSELGLCSSLEEIYLAENFFN 527 (627)
Q Consensus 473 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~ 527 (627)
+++|.+... ..+..+-+|..||+++|+|... -...++++|.|+.+.|.+|.+.
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 444444311 1233444444444444444311 0122344444444444444443
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.13 E-value=3e-12 Score=119.49 Aligned_cols=191 Identities=21% Similarity=0.245 Sum_probs=100.0
Q ss_pred CCCCCCeeeCCCCCCCCCCCCC----CCCCCCCCEEECCCCCCCCC-------------CCCccCCCCCccEEEeeCccc
Q 037951 143 SLYKLKQLALPMNNLTGGIPPF----LGNLTSLEVVSLAGNPFGGN-------------IPDSLGQLKELKTLGIGGNNL 205 (627)
Q Consensus 143 ~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~L~~n~~~~~-------------~~~~l~~l~~L~~L~l~~n~~ 205 (627)
.+++|++|+||+|.+....+.. +..+..|++|+|.+|.+.-. .......-+.||++..++|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 3445555555555544322222 23455555555555554411 011223345677777777766
Q ss_pred cc----cCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeeccccccccc
Q 037951 206 SG----SIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGK 281 (627)
Q Consensus 206 ~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 281 (627)
.. .+...+...+.|+.+.+..|.+...... .....+..+++|+.||+.+|.++..
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~---------------------al~eal~~~~~LevLdl~DNtft~e 228 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVT---------------------ALAEALEHCPHLEVLDLRDNTFTLE 228 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhH---------------------HHHHHHHhCCcceeeecccchhhhH
Confidence 53 1233455566777777777766422211 1122345566666666666655433
Q ss_pred C----ccCcCCCCCcCEEeccCccCCCCCCCCccccccCC-CCCcccEEEccCcccccccc----hhHHhccccccEEEe
Q 037951 282 L----SVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLA-NCSKLQVLSLGGNQFRGALP----HSIANLSSQLQILVL 352 (627)
Q Consensus 282 ~----~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~----~~~~~~~~~L~~L~l 352 (627)
. ...+..+++|+.+++++|.+..-+.. .+..++. ..+.|+++.+.+|.++.... ..+.. .+.|..|++
T Consensus 229 gs~~LakaL~s~~~L~El~l~dcll~~~Ga~--a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~e-k~dL~kLnL 305 (382)
T KOG1909|consen 229 GSVALAKALSSWPHLRELNLGDCLLENEGAI--AFVDALKESAPSLEVLELAGNEITRDAALALAACMAE-KPDLEKLNL 305 (382)
T ss_pred HHHHHHHHhcccchheeecccccccccccHH--HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhc-chhhHHhcC
Confidence 2 23355666777777777766654332 2333332 25777777777777763322 22223 236778888
Q ss_pred ecccc
Q 037951 353 GTNQL 357 (627)
Q Consensus 353 ~~n~l 357 (627)
++|.+
T Consensus 306 ngN~l 310 (382)
T KOG1909|consen 306 NGNRL 310 (382)
T ss_pred Ccccc
Confidence 88877
No 31
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.11 E-value=7.6e-12 Score=116.89 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=64.3
Q ss_pred cccEEEeecccccc----cCcccccCCCCCCEEeCCCCccccc----cchhhcCCCCCcEeeccCCcccccCChhh----
Q 037951 346 QLQILVLGTNQLYG----SIPSGIGNLVNLYSLQTEENQFTGS----IPKEMGKLLNLQGLDFGGNHFSGEIPSTL---- 413 (627)
Q Consensus 346 ~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~---- 413 (627)
.|+.+.+..|.+.. .+..++..+++|+.|||+.|-|+.. +...+..+++|+.|++++|.+...-...|
T Consensus 186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 44455555444431 1233456677777777777777632 23456667777777777777764433222
Q ss_pred -hCCCCCCEEEccCCcccccc----ChhhcCCCCCCEEECcCCcC
Q 037951 414 -GNLSSLYEIFLGDNNLSGVI----PSSLGNLERLAILEMFANEL 453 (627)
Q Consensus 414 -~~~~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~n~l 453 (627)
...|+|+.|.+.+|.++... ..++...+.|+.|++++|++
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 23677777888777776332 22344466677777777776
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=2.6e-11 Score=110.67 Aligned_cols=132 Identities=23% Similarity=0.235 Sum_probs=88.7
Q ss_pred CCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEE
Q 037951 440 LERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEI 519 (627)
Q Consensus 440 l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 519 (627)
...|+++++++|.+. .+.+++.-.+.+ +.|++++|.+... ..+..+++|++||||+|.++ .+...-..+.+.++|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pki-r~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKL-RRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccce-eEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 345666666666665 455555555555 6677777766532 22667788888888888877 444334456777888
Q ss_pred ECCCCcccccCChhccCCCCCCEEECCCCcCccccc-hhcccCc-CCeeeCcCCcccccCC
Q 037951 520 YLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP-IFLEALS-LEYLNLSFNDFEGRLP 578 (627)
Q Consensus 520 ~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p-~~~~~~~-L~~L~ls~n~l~~~~p 578 (627)
.|++|.|... .+++.+.+|..||+++|++...-. ..++.++ |+.+.+.+||+.+...
T Consensus 358 ~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 358 KLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred ehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 8888887643 567778888888888888764322 4556666 8888888888876554
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.07 E-value=6.4e-11 Score=104.04 Aligned_cols=107 Identities=36% Similarity=0.455 Sum_probs=31.8
Q ss_pred CCCCCCEEECCCCCCcccCCcccC-CCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccc-cCCCCCC
Q 037951 71 NLSFLREINLMNNTIQGEIPLEFG-RLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEF-VSLYKLK 148 (627)
Q Consensus 71 ~l~~L~~L~Ls~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l-~~l~~L~ 148 (627)
+...+++|+|.+|.|+. +. .++ .+.+|+.|++++|.|+. ++ .+..+++|++|++++|+++. +...+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred ccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 34457777777777763 22 243 46677777777777773 32 46667777777777777773 33333 3567777
Q ss_pred eeeCCCCCCCCC-CCCCCCCCCCCCEEECCCCCCC
Q 037951 149 QLALPMNNLTGG-IPPFLGNLTSLEVVSLAGNPFG 182 (627)
Q Consensus 149 ~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~ 182 (627)
+|++++|++... .-..+..+++|++|++.+|.+.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 777777776531 1233455666666666666665
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.1e-11 Score=116.02 Aligned_cols=206 Identities=23% Similarity=0.267 Sum_probs=109.5
Q ss_pred cCCCCCCEEeCCCCccccccc--hhhcCCCCCcEeeccCCccccc--CChhhhCCCCCCEEEccCCccccccChh-hcCC
Q 037951 366 GNLVNLYSLQTEENQFTGSIP--KEMGKLLNLQGLDFGGNHFSGE--IPSTLGNLSSLYEIFLGDNNLSGVIPSS-LGNL 440 (627)
Q Consensus 366 ~~l~~L~~L~l~~n~~~~~~~--~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~-l~~l 440 (627)
.++.+|+.+.+.++... ..+ .....|++++.|||+.|-+... +......+|+|+.|+++.|++....... -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45677888888877665 222 3556678888888888776632 2223456777888888877765222111 1245
Q ss_pred CCCCEEECcCCcCccc-CCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCC--ccccCCCCCC
Q 037951 441 ERLAILEMFANELSGT-IPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIP--SELGLCSSLE 517 (627)
Q Consensus 441 ~~L~~L~l~~n~l~~~-~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~--~~l~~l~~L~ 517 (627)
+.|+.|.+++|.++.. +-.....++++ +.|++..|...........-+..|++|||++|++. ..+ ...+.++.|+
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl-~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSL-EVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLN 274 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcH-HHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchh
Confidence 5677777777766421 11112233444 56666666422222222334556666666666655 222 2345566666
Q ss_pred EEECCCCccccc-CChh-----ccCCCCCCEEECCCCcCcc--ccchhcccCc-CCeeeCcCCcccc
Q 037951 518 EIYLAENFFNGF-IPSF-----FRTSRGIRKVDLSRNNFFG--QIPIFLEALS-LEYLNLSFNDFEG 575 (627)
Q Consensus 518 ~L~L~~n~i~~~-~~~~-----l~~l~~L~~L~ls~n~l~~--~~p~~~~~~~-L~~L~ls~n~l~~ 575 (627)
.|+++.+.+... .|+. -...++|+.|+++.|++.. ++- .+.... |+.|.+-.|++..
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~-~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLN-HLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccc-hhhccchhhhhhcccccccc
Confidence 666666665543 2221 2335566666666666642 111 111122 5555555555543
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.00 E-value=2.6e-10 Score=125.50 Aligned_cols=129 Identities=29% Similarity=0.342 Sum_probs=84.2
Q ss_pred CCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCc--CcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCee
Q 037951 73 SFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNS--LVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQL 150 (627)
Q Consensus 73 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 150 (627)
..+|...+.+|.+. .++... ..++|++|-+.+|. +.....+.|..++.|++||+++|.--+.+|+.++.+.+||+|
T Consensus 523 ~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 45666666666664 334333 23467777777764 443444456677777777777765555777777777777777
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCcc
Q 037951 151 ALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNN 204 (627)
Q Consensus 151 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 204 (627)
+++++.+. .+|..+++++.|.+|++..+.....++.....+.+||+|.+....
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 77777776 667777777777777777666544455556667777777776554
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=6.1e-11 Score=114.02 Aligned_cols=191 Identities=20% Similarity=0.198 Sum_probs=98.9
Q ss_pred cCCCCCCEEEccCccccccCC--ccccCCCCCCeeeCCCCCCCC--CCCCCCCCCCCCCEEECCCCCCCCCCCCc-cCCC
Q 037951 118 SYCSRLTVLVLGNNKLVGSIP--FEFVSLYKLKQLALPMNNLTG--GIPPFLGNLTSLEVVSLAGNPFGGNIPDS-LGQL 192 (627)
Q Consensus 118 ~~l~~L~~L~ls~n~l~~~~~--~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~~~-l~~l 192 (627)
+++.+|+...|.++.+. ..+ .....+++++.|||++|-+.. .+......+++|+.|+++.|++....... -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 45667777777776665 222 245567777777777775543 12233455666777777766665222111 1134
Q ss_pred CCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEee
Q 037951 193 KELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVE 272 (627)
Q Consensus 193 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 272 (627)
++|+.|.++.|.++. .-..++...+|+++.|++..|............+..|+.|+
T Consensus 197 ~~lK~L~l~~CGls~------------------------k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~Ld 252 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSW------------------------KDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELD 252 (505)
T ss_pred hhhheEEeccCCCCH------------------------HHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhcc
Confidence 555555555555542 22222233355555555555532222222233455666677
Q ss_pred cccccccccCc-cCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccc
Q 037951 273 IASNSFFGKLS-VNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFR 333 (627)
Q Consensus 273 l~~~~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 333 (627)
|++|.+..... ...+.++.|+.|.++.+.+.++.....+.......+++|+.|++..|++.
T Consensus 253 Ls~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 253 LSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred ccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 76666543321 22456666777777766666544332222333445556666666666553
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.89 E-value=1.5e-09 Score=95.38 Aligned_cols=109 Identities=28% Similarity=0.383 Sum_probs=28.8
Q ss_pred cCCCCCCCEEeCCCCcCcccCCcccc-CCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCC-CCCCC
Q 037951 93 FGRLRRLETLLLSDNSLVGKIPANLS-YCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFL-GNLTS 170 (627)
Q Consensus 93 ~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~ 170 (627)
+.+..+++.|+|++|.|+.+ +.++ .+.+|++|++++|.++. + +.+..+++|++|++++|.++. +.+.+ ..+++
T Consensus 15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 33455677777777777632 2344 46677777777777763 2 246666677777777777663 22223 24666
Q ss_pred CCEEECCCCCCCCCC-CCccCCCCCccEEEeeCcccc
Q 037951 171 LEVVSLAGNPFGGNI-PDSLGQLKELKTLGIGGNNLS 206 (627)
Q Consensus 171 L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~ 206 (627)
|++|++++|++.... -..+..+++|+.|++.+|+++
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666666666665321 123344455555555555544
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.89 E-value=1.9e-09 Score=118.72 Aligned_cols=274 Identities=22% Similarity=0.234 Sum_probs=153.2
Q ss_pred CCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcc--cccccchhHHhccccccEEEeecccccccCcccccC
Q 037951 290 KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQ--FRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGN 367 (627)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~--~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 367 (627)
...+.+.+-+|.+..+. .-..++.|++|-+.+|. +. .++..+....+.|+.||+++|.--+.+|..++.
T Consensus 523 ~~~rr~s~~~~~~~~~~--------~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIA--------GSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred hheeEEEEeccchhhcc--------CCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 44555555555443322 22334567778777775 44 444444443347888888877665678888888
Q ss_pred CCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCcc--ccccChhhcCCCCCCE
Q 037951 368 LVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNL--SGVIPSSLGNLERLAI 445 (627)
Q Consensus 368 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~--~~~~~~~l~~l~~L~~ 445 (627)
+-+|+.|++++..+. .+|..++.+..|.+|++..+.....++.....+++|++|.+..-.. +......+..+++|+.
T Consensus 594 Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ 672 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLEN 672 (889)
T ss_pred hhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhh
Confidence 888888888888877 6788888888888888887776656666666688888888765442 2222223445555555
Q ss_pred EECcCCcCcc-cCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccC------CCCCCE
Q 037951 446 LEMFANELSG-TIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGL------CSSLEE 518 (627)
Q Consensus 446 L~l~~n~l~~-~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~ 518 (627)
+......... .-......+.+..+.+.+.++... ..+..+..+.+|+.|.+.+|.+.......... ++++..
T Consensus 673 ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~ 751 (889)
T KOG4658|consen 673 LSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSK 751 (889)
T ss_pred heeecchhHhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHH
Confidence 5543332200 000112222222223333333332 34455677888888888888876322211111 122333
Q ss_pred EECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccc
Q 037951 519 IYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEG 575 (627)
Q Consensus 519 L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~ 575 (627)
+.+.++.... .+.+..-.++|+.|.+.+|.....+........ ++.+-+..+.+.+
T Consensus 752 ~~~~~~~~~r-~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 752 VSILNCHMLR-DLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred HHhhcccccc-ccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 3333332211 222223457888888888877665544444444 5555555555544
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=4.1e-09 Score=75.97 Aligned_cols=61 Identities=31% Similarity=0.456 Sum_probs=43.8
Q ss_pred CCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcC
Q 037951 490 KALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNF 550 (627)
Q Consensus 490 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l 550 (627)
++|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|+.|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777744445677777777777777777777777777777777777777764
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=4.9e-09 Score=75.56 Aligned_cols=59 Identities=37% Similarity=0.436 Sum_probs=36.4
Q ss_pred CCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcc
Q 037951 74 FLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNK 132 (627)
Q Consensus 74 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~ 132 (627)
+|++|++++|+++...++.|.++++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45666666666664444566666666666666666665555566666666666666664
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.68 E-value=3.2e-09 Score=109.65 Aligned_cols=150 Identities=32% Similarity=0.362 Sum_probs=81.8
Q ss_pred CCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeee
Q 037951 72 LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLA 151 (627)
Q Consensus 72 l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 151 (627)
+..++.+++..|.+.. .-..+..+++|+.|++.+|+|.. +...+..+++|++|++++|.|+.. ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 4455555566666552 22335566667777777776663 222255666677777777766532 2355555566666
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-CccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCc
Q 037951 152 LPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIP-DSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH 230 (627)
Q Consensus 152 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 230 (627)
+++|.+.. ...+..++.|+.+++++|++....+ . ...+.+++.+.+.+|.+.. ...+..+..+..+++..|.++
T Consensus 147 l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 147 LSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccce
Confidence 66666652 2334446666666666666664322 1 3555666666666666542 222333333333344444443
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.62 E-value=4.1e-09 Score=108.78 Aligned_cols=129 Identities=26% Similarity=0.291 Sum_probs=62.0
Q ss_pred CCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccC
Q 037951 288 GMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGN 367 (627)
Q Consensus 288 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 367 (627)
.+..++.+.+..|.+... ...+..+.+|+.|++.+|++..... .+..+. +|++|++++|.|+... .+..
T Consensus 70 ~l~~l~~l~l~~n~i~~~-------~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~-~L~~L~ls~N~I~~i~--~l~~ 138 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKI-------LNHLSKLKSLEALDLYDNKIEKIEN-LLSSLV-NLQVLDLSFNKITKLE--GLST 138 (414)
T ss_pred HhHhHHhhccchhhhhhh-------hcccccccceeeeeccccchhhccc-chhhhh-cchheecccccccccc--chhh
Confidence 344555555666655441 1234555666666666666653222 122232 5555666655554322 2334
Q ss_pred CCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChh-hhCCCCCCEEEccCCccc
Q 037951 368 LVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPST-LGNLSSLYEIFLGDNNLS 430 (627)
Q Consensus 368 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~~L~~L~l~~n~~~ 430 (627)
++.|+.|++.+|.+... ..+..++.|+.+++++|++...-+ . ...+.+++.+++.+|.+.
T Consensus 139 l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~-~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIEN-DELSELISLEELDLGGNSIR 199 (414)
T ss_pred ccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhh-hhhhhccchHHHhccCCchh
Confidence 44455555555555421 123335555555555555542221 1 234455555555555544
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=2.9e-09 Score=97.49 Aligned_cols=160 Identities=20% Similarity=0.163 Sum_probs=86.1
Q ss_pred CCCCCcEeecccccccccCccCcCCCCCcCEEeccCcc-CCCCCCCCccccccCCCCCcccEEEccCccccc-ccchhHH
Q 037951 264 NASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNN-LGSGESDEMGFMNSLANCSKLQVLSLGGNQFRG-ALPHSIA 341 (627)
Q Consensus 264 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~~~~ 341 (627)
.|.+|+.+.+.++++.+.+...+++-.+|+.++++.+. ++.. +....+.+|+.|.+|+++.|.... .....+.
T Consensus 208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n-----~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~ 282 (419)
T KOG2120|consen 208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTEN-----ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA 282 (419)
T ss_pred HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchh-----HHHHHHHhhhhHhhcCchHhhccchhhhHHHh
Confidence 44444444444444444444444444555555554432 1110 122234555666666666654432 2223344
Q ss_pred hccccccEEEeeccccc---ccCcccccCCCCCCEEeCCCCc-cccccchhhcCCCCCcEeeccCCcccccCChh---hh
Q 037951 342 NLSSQLQILVLGTNQLY---GSIPSGIGNLVNLYSLQTEENQ-FTGSIPKEMGKLLNLQGLDFGGNHFSGEIPST---LG 414 (627)
Q Consensus 342 ~~~~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~---~~ 414 (627)
....+|+.|+++++.-. ..+......+++|.+||+++|. ++......|..++.|++|.++.|.. .+|.. +.
T Consensus 283 hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~ 360 (419)
T KOG2120|consen 283 HISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELN 360 (419)
T ss_pred hhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeec
Confidence 44456777777765321 1111123457788888888773 4444444566778888888888864 33443 45
Q ss_pred CCCCCCEEEccCCccc
Q 037951 415 NLSSLYEIFLGDNNLS 430 (627)
Q Consensus 415 ~~~~L~~L~l~~n~~~ 430 (627)
..|+|.+|++.++--.
T Consensus 361 s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 361 SKPSLVYLDVFGCVSD 376 (419)
T ss_pred cCcceEEEEeccccCc
Confidence 6788888888776543
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.43 E-value=4.5e-09 Score=107.42 Aligned_cols=123 Identities=26% Similarity=0.264 Sum_probs=73.1
Q ss_pred CCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCcc-ccCCCCCCEEEC
Q 037951 443 LAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSE-LGLCSSLEEIYL 521 (627)
Q Consensus 443 L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~L 521 (627)
|.+-+.++|.+. .+...+.-++.+ +.|++++|++... +.+..++.|++|||++|.+. .+|.. ...+. |+.|++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~al-e~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPAL-ESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHh-hhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 333444444443 333333334444 5556666665532 24667777888888888776 55542 33344 788888
Q ss_pred CCCcccccCChhccCCCCCCEEECCCCcCccc-cchhcccCc-CCeeeCcCCcc
Q 037951 522 AENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQ-IPIFLEALS-LEYLNLSFNDF 573 (627)
Q Consensus 522 ~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~-~p~~~~~~~-L~~L~ls~n~l 573 (627)
++|.++.. .++.++.+|+.||+++|-+.+. --..++.+. |+.|.+.+||+
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 88877743 4567777888888888877652 123344444 67777777766
No 45
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.41 E-value=3.6e-07 Score=59.98 Aligned_cols=40 Identities=50% Similarity=1.023 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCCCCCC--CCCCCcccceee
Q 037951 16 EGDLAALQAFKSMISHDPQGILNSWNDS--RHFCEWEGITCD 55 (627)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~~~~~~~w~~~--~~~c~~~~~~c~ 55 (627)
++|+++|++||.++..+|...+.+|... .++|.|.||+||
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 5799999999999987788899999987 799999999995
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=9.5e-09 Score=94.20 Aligned_cols=181 Identities=17% Similarity=0.083 Sum_probs=99.0
Q ss_pred CCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeeccccccccc--CccCcCCCCCcCEE
Q 037951 218 FLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGK--LSVNFGGMKNLSYL 295 (627)
Q Consensus 218 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L 295 (627)
.|+.+|++...++..-...+...+.+|+.+.+.++.+.+.+...++.-.+|+.++++.+.-... ..-.+.+++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4667777766666444444555566777777777777666666666667777777766543211 11224566677777
Q ss_pred eccCccCCCCCCCCccccccCCCCCcccEEEccCccc--ccccchhHHhccccccEEEeeccc-ccccCcccccCCCCCC
Q 037951 296 ILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQF--RGALPHSIANLSSQLQILVLGTNQ-LYGSIPSGIGNLVNLY 372 (627)
Q Consensus 296 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~--~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 372 (627)
++++|.+...... ... -.--++|+.|+++|+.- ...-.+.+..-.+++..||+++|. ++......|..++.|+
T Consensus 266 NlsWc~l~~~~Vt--v~V--~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 266 NLSWCFLFTEKVT--VAV--AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred CchHhhccchhhh--HHH--hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 7777665542211 011 11125666677766521 111122233333467777777663 3333333455666777
Q ss_pred EEeCCCCccccccchh---hcCCCCCcEeeccCCc
Q 037951 373 SLQTEENQFTGSIPKE---MGKLLNLQGLDFGGNH 404 (627)
Q Consensus 373 ~L~l~~n~~~~~~~~~---~~~l~~L~~L~L~~n~ 404 (627)
+|.++.|.. .+|+. +...|+|.+||+.++-
T Consensus 342 ~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 342 HLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 777776643 23332 3455667777766654
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=2.6e-08 Score=102.01 Aligned_cols=157 Identities=25% Similarity=0.242 Sum_probs=89.6
Q ss_pred ccccCCCCCCCEEECCCCCCcccCCcccCCC-C--------------------------------CCCEEeCCCCcCccc
Q 037951 66 SPQIGNLSFLREINLMNNTIQGEIPLEFGRL-R--------------------------------RLETLLLSDNSLVGK 112 (627)
Q Consensus 66 ~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l-~--------------------------------~L~~L~L~~n~i~~~ 112 (627)
|-.+..++.||+|.+.++.+.. . ..+..+ . .|.+.+.++|.+. .
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~-~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~-~ 178 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-A-KGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV-L 178 (1096)
T ss_pred CceeccccceeeEEecCcchhh-h-hhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-h
Confidence 4466778888888888887642 1 111111 1 2333444445444 3
Q ss_pred CCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCC
Q 037951 113 IPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQL 192 (627)
Q Consensus 113 ~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l 192 (627)
+..++.-++.|+.|+|++|+++. ...+..+++|++||+++|.+....--.-..+. |+.|.+++|.++.. ..+.++
T Consensus 179 mD~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~L 253 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL--RGIENL 253 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh--hhHHhh
Confidence 44455556667777777777662 23666777777777777776632222222333 77777777766633 346666
Q ss_pred CCccEEEeeCcccccc-CCccccCCCCCcEEEeecccCc
Q 037951 193 KELKTLGIGGNNLSGS-IPPSIYNLSFLVIFSVSENQMH 230 (627)
Q Consensus 193 ~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~ 230 (627)
++|+.||+++|-+.+. --..++.+..|+.|.+.||.+.
T Consensus 254 ksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 254 KSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 7777777777665531 1123445556666677776664
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.25 E-value=1.3e-07 Score=86.81 Aligned_cols=64 Identities=19% Similarity=0.126 Sum_probs=31.7
Q ss_pred CCCCcEeecccccccccC-ccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEcc
Q 037951 265 ASKLEYVEIASNSFFGKL-SVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLG 328 (627)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 328 (627)
++.+..|.++.+++..-. .+.+.+++.|..|.++++.+.+.-.......--+..+++++.|+=+
T Consensus 223 ~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 223 FPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred CCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 444445555555543321 2335666666666666665544222221222234556666666544
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=2.8e-07 Score=84.75 Aligned_cols=185 Identities=18% Similarity=0.174 Sum_probs=85.9
Q ss_pred CCCCCeeeCCCCCCCC--CCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCcccccc-CCccccCCCCCc
Q 037951 144 LYKLKQLALPMNNLTG--GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGS-IPPSIYNLSFLV 220 (627)
Q Consensus 144 l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~ 220 (627)
.+.++.+||.+|.++. .+...+.++|.|+.|+++.|.+...+...-..+++|++|-+.+..+.-. ....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3445555555555542 2333345556666666666655532221113445666666655554322 122334555566
Q ss_pred EEEeecccCccC--CChhhhhcCCCCceeccCCccccc--cCCccccCCCCCcEeecccccccccC-ccCcCCCCCcCEE
Q 037951 221 IFSVSENQMHGS--LPPSLGLYFPNLKLFQTNENFFSG--SIPISLSNASKLEYVEIASNSFFGKL-SVNFGGMKNLSYL 295 (627)
Q Consensus 221 ~L~l~~n~l~~~--~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L 295 (627)
.+.++.|.+.-. -........+.++++....|.+.- .....-.-++++..+-+..+.+.... ...+..++.+-.|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 666655533210 000111113344455444443221 00011123455666666666553322 2234455555566
Q ss_pred eccCccCCCCCCCCccccccCCCCCcccEEEccCcccc
Q 037951 296 ILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFR 333 (627)
Q Consensus 296 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 333 (627)
.+..++|.+ |.-...+..++.|..|.+.++.+.
T Consensus 230 nL~~~~ids-----wasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 230 NLGANNIDS-----WASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhccccccc-----HHHHHHHcCCchhheeeccCCccc
Confidence 666666554 233445666666666666666554
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.21 E-value=3e-07 Score=83.46 Aligned_cols=87 Identities=18% Similarity=0.186 Sum_probs=40.5
Q ss_pred CCcccEEEccCcccccccchhHHh----ccccccEEEeeccccccc-----CcccccCCCCCCEEeCCCCccccc----c
Q 037951 319 CSKLQVLSLGGNQFRGALPHSIAN----LSSQLQILVLGTNQLYGS-----IPSGIGNLVNLYSLQTEENQFTGS----I 385 (627)
Q Consensus 319 ~~~L~~L~l~~n~~~~~~~~~~~~----~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~~~~~----~ 385 (627)
-|.|+.+....|++. ..+..... ....|+.+.+..|.|... +-..+..+.+|+.||+..|.++.. +
T Consensus 156 kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 156 KPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred CCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 355666666666554 22211110 001455555555544311 111233455666666666665522 2
Q ss_pred chhhcCCCCCcEeeccCCccc
Q 037951 386 PKEMGKLLNLQGLDFGGNHFS 406 (627)
Q Consensus 386 ~~~~~~l~~L~~L~L~~n~~~ 406 (627)
..+++.++.|+.|.+.+|-++
T Consensus 235 a~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHhcccchhhhccccchhhc
Confidence 233445555666666665554
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=9.5e-08 Score=77.46 Aligned_cols=79 Identities=22% Similarity=0.349 Sum_probs=42.2
Q ss_pred EEEccCCccccCCCccc-cCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCC
Q 037951 470 SLDLAENHFVGSIPPRI-GNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRN 548 (627)
Q Consensus 470 ~L~l~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n 548 (627)
..++++|.+.. .|+.| ...+.++.|++++|.+. .+|.++..++.|+.|+++.|++. ..|+.+..+.+|..||..+|
T Consensus 57 ~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 57 KISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred EEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCC
Confidence 34455554442 22222 23345566666666665 55666666666666666666665 34444444556666665555
Q ss_pred cCc
Q 037951 549 NFF 551 (627)
Q Consensus 549 ~l~ 551 (627)
.+.
T Consensus 134 a~~ 136 (177)
T KOG4579|consen 134 ARA 136 (177)
T ss_pred ccc
Confidence 554
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.15 E-value=1.3e-07 Score=85.68 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=22.5
Q ss_pred ccCCCCCCeeeCCCCCCCCCCCCC----CCCCCCCCEEECCCCCCC
Q 037951 141 FVSLYKLKQLALPMNNLTGGIPPF----LGNLTSLEVVSLAGNPFG 182 (627)
Q Consensus 141 l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~L~~n~~~ 182 (627)
+-+|++|+..+|++|.+....|.. +++-+.|.+|.+++|.+.
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 345555666666666555433332 344556666666666544
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.11 E-value=2.8e-07 Score=74.74 Aligned_cols=141 Identities=18% Similarity=0.227 Sum_probs=97.9
Q ss_pred EEEccCCccccCCCcc---ccCCCCCCEEEccCCcccccCCcccc-CCCCCCEEECCCCcccccCChhccCCCCCCEEEC
Q 037951 470 SLDLAENHFVGSIPPR---IGNLKALRCFDVSNNDLSGEIPSELG-LCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDL 545 (627)
Q Consensus 470 ~L~l~~n~l~~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l 545 (627)
.++++.|++- .+++. +.....|+..+|++|.+. ..|..|. ..+..+.|++++|.|.. +|+.+..++.|+.|++
T Consensus 31 ~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd-vPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 31 FLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD-VPEELAAMPALRSLNL 107 (177)
T ss_pred hcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh-chHHHhhhHHhhhccc
Confidence 4566666553 22222 345567788899999998 5666654 45689999999999985 6767999999999999
Q ss_pred CCCcCccccchhcccCc-CCeeeCcCCcccccCCCCCccCCCCccccccCCCCcccCCCCCCCCCC-CCCCCCCCCCCCC
Q 037951 546 SRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIHELQLPKCP-EHESSRGGDLPGS 623 (627)
Q Consensus 546 s~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~~~~~~l~~l~~~~n~~l~~~~~~l~i~~c~-~~~~~~~~~~p~~ 623 (627)
+.|++. ..|..+..+. +..||.-+|... .+|....++++..+.=.||.-+.+ .|+ ++|++...++|.+
T Consensus 108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~--------~~~~klqa~kp~~l~~s 177 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGD--------ETKKKLQALKPEKLDLS 177 (177)
T ss_pred ccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccc--------cCcccccccCCCCCCCC
Confidence 999998 5555555565 888888888765 666555556665444445533432 254 6888877777653
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.00 E-value=2.4e-05 Score=77.79 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=29.5
Q ss_pred cCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCC
Q 037951 366 GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDN 427 (627)
Q Consensus 366 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n 427 (627)
..+..++.|++++|.++ .+|. + ..+|+.|.+++|.-...+|..+ .++|++|++++|
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 34466666666666555 3341 1 2346666666644333444433 245666666665
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.94 E-value=1.7e-05 Score=69.32 Aligned_cols=105 Identities=30% Similarity=0.294 Sum_probs=64.6
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCC-CCCCCCCCCCCCEEE
Q 037951 97 RRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGG-IPPFLGNLTSLEVVS 175 (627)
Q Consensus 97 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~ 175 (627)
.+...+||++|.+.. + ..|..++.|.+|.+++|+|+.+.|.--..+++|+.|.+.+|.+... ...-+..++.|++|.
T Consensus 42 d~~d~iDLtdNdl~~-l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK-L-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhh-c-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 455667777776652 2 2466667777777777777755555555566677777777766531 123356677778887
Q ss_pred CCCCCCCCCC---CCccCCCCCccEEEeeCc
Q 037951 176 LAGNPFGGNI---PDSLGQLKELKTLGIGGN 203 (627)
Q Consensus 176 L~~n~~~~~~---~~~l~~l~~L~~L~l~~n 203 (627)
+-+|.++..- -..+..+++|++||+.+-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 7777776321 124556677777776654
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.91 E-value=9e-06 Score=53.38 Aligned_cols=36 Identities=33% Similarity=0.553 Sum_probs=18.0
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEECCCCccc
Q 037951 491 ALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFN 527 (627)
Q Consensus 491 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 527 (627)
+|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555554
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.89 E-value=4.9e-05 Score=75.58 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=45.1
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
+++.|++++|.++ .+|. -..+|+.|.+++|.-...+|+.+ .++|+.|++++|.....+| ++|+.|+++
T Consensus 53 ~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L~ 120 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLEIK 120 (426)
T ss_pred CCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccceEEeC
Confidence 7888888888776 3442 23468888888764433566554 2578888888873222333 356677776
Q ss_pred CCcc
Q 037951 426 DNNL 429 (627)
Q Consensus 426 ~n~~ 429 (627)
.+..
T Consensus 121 ~n~~ 124 (426)
T PRK15386 121 GSAT 124 (426)
T ss_pred CCCC
Confidence 5543
No 58
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.81 E-value=9.2e-07 Score=85.35 Aligned_cols=278 Identities=15% Similarity=0.055 Sum_probs=140.4
Q ss_pred CcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcc-cccccchhHHhccccccEEEeecc-cccccCcc-cccC
Q 037951 291 NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQ-FRGALPHSIANLSSQLQILVLGTN-QLYGSIPS-GIGN 367 (627)
Q Consensus 291 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~-~~~~ 367 (627)
.|+.|.+.++.-.... .......+++++++|.+.+|. +++..-..+....+.+++|++..| .++...-. ....
T Consensus 139 ~lk~LSlrG~r~v~~s----slrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDS----SLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG 214 (483)
T ss_pred ccccccccccccCCcc----hhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh
Confidence 4556666555332211 223344567777777777764 344444445555557777777775 33322222 2345
Q ss_pred CCCCCEEeCCCCc-cccc-cchhhcCCCCCcEeeccCCcccc--cCChhhhCCCCCCEEEccCCc-cccccCh-hhcCCC
Q 037951 368 LVNLYSLQTEENQ-FTGS-IPKEMGKLLNLQGLDFGGNHFSG--EIPSTLGNLSSLYEIFLGDNN-LSGVIPS-SLGNLE 441 (627)
Q Consensus 368 l~~L~~L~l~~n~-~~~~-~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~~~L~~L~l~~n~-~~~~~~~-~l~~l~ 441 (627)
+++|++++++.|. +++. +.....++..++.+.+.||.-.+ .+...-..+..+.++++.+|. ++..... .-..+.
T Consensus 215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~ 294 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCH 294 (483)
T ss_pred hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhh
Confidence 6777777777763 3331 12234456666666666654221 011111235556666666664 2222111 112455
Q ss_pred CCCEEECcCCcCcccCC-ccccc-cccCccEEEccCCccccC-CCccc-cCCCCCCEEEccCCccc--ccCCccccCCCC
Q 037951 442 RLAILEMFANELSGTIP-GDIFN-ISSLSVSLDLAENHFVGS-IPPRI-GNLKALRCFDVSNNDLS--GEIPSELGLCSS 515 (627)
Q Consensus 442 ~L~~L~l~~n~l~~~~~-~~~~~-~~~ll~~L~l~~n~l~~~-~~~~l-~~l~~L~~L~Ls~n~l~--~~~~~~l~~l~~ 515 (627)
.|+.|..+++...+..+ ..++. ...+ +.+.++.|+.-+. -...+ .+++.|+.+++..+... +.+...-.+++.
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L-~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNL-QVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCce-EEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 66777776654322111 12222 2333 6667766653211 11111 35677777777777543 223333356777
Q ss_pred CCEEECCCCcccccC-----ChhccCCCCCCEEECCCCcCcc-ccchhcccCc-CCeeeCcCCcc
Q 037951 516 LEEIYLAENFFNGFI-----PSFFRTSRGIRKVDLSRNNFFG-QIPIFLEALS-LEYLNLSFNDF 573 (627)
Q Consensus 516 L~~L~L~~n~i~~~~-----~~~l~~l~~L~~L~ls~n~l~~-~~p~~~~~~~-L~~L~ls~n~l 573 (627)
|++|.++++...... ...-.....|+.+.+++++.+. ..-..+.... |+.+++-++..
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 888888877543221 1111235667777777777654 2223444444 77777766654
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=1.8e-05 Score=51.96 Aligned_cols=36 Identities=39% Similarity=0.538 Sum_probs=14.7
Q ss_pred CCCEEeCCCCcCcccCCccccCCCCCCEEEccCcccc
Q 037951 98 RLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLV 134 (627)
Q Consensus 98 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~ 134 (627)
+|++|++++|+|+ .+|..++++++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444443
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=1.7e-05 Score=85.80 Aligned_cols=126 Identities=20% Similarity=0.201 Sum_probs=56.2
Q ss_pred CCCCCCEEEccCcccccc-CCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCccCCCCCcc
Q 037951 119 YCSRLTVLVLGNNKLVGS-IPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGG-NIPDSLGQLKELK 196 (627)
Q Consensus 119 ~l~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~ 196 (627)
-+|.|++|.+++-.+... ......++++|+.||++++.++.. .+++.+++|++|.+.+=.+.. ..-..+.++++|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCC
Confidence 345555555555443211 122233455555555555555522 445555555555555544442 1112344455555
Q ss_pred EEEeeCccccccC------CccccCCCCCcEEEeecccCccCCChhhhhcCCCCce
Q 037951 197 TLGIGGNNLSGSI------PPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKL 246 (627)
Q Consensus 197 ~L~l~~n~~~~~~------~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 246 (627)
.||+|........ -+.-..+|.|+.||.+++.+.+.+-+.+...-|+|+.
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 5555544332110 0111224555555555555544444444333444443
No 61
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.47 E-value=2.6e-05 Score=84.34 Aligned_cols=105 Identities=20% Similarity=0.284 Sum_probs=51.9
Q ss_pred CCCCEEECCCCCCC-CCCCCccC-CCCCccEEEeeCcccccc-CCccccCCCCCcEEEeecccCccCCChhhhhcCCCCc
Q 037951 169 TSLEVVSLAGNPFG-GNIPDSLG-QLKELKTLGIGGNNLSGS-IPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLK 245 (627)
Q Consensus 169 ~~L~~L~L~~n~~~-~~~~~~l~-~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 245 (627)
.+|++|++++...- ...+..++ .+|+|++|.+.+-.+... +.....++++|..||+++++++.. ..-..+.+|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 46788888775432 22223332 357777777777555422 223344666677777766666522 1111244555
Q ss_pred eeccCCccccc-cCCccccCCCCCcEeecccc
Q 037951 246 LFQTNENFFSG-SIPISLSNASKLEYVEIASN 276 (627)
Q Consensus 246 ~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~ 276 (627)
.|.+.+-.+.. ..-..+.++++|+.||+|..
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 55554444432 11122334444444444443
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.46 E-value=0.00034 Score=59.25 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=54.3
Q ss_pred cccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCC
Q 037951 67 PQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYK 146 (627)
Q Consensus 67 ~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~ 146 (627)
..|..+++|+.+.+.. .+......+|..+++|+.+++.++ +.......|.++++++.+.+.+ .+.......|..+++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 4556666777777764 444445566777777777777664 5544455566776677777755 333244455666666
Q ss_pred CCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCc
Q 037951 147 LKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKEL 195 (627)
Q Consensus 147 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 195 (627)
|+.+++..+ +.......|.++ +|+.+.+.. .+.......|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 776666544 332334445555 666666554 3332333445444444
No 63
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.44 E-value=4.9e-06 Score=80.48 Aligned_cols=15 Identities=13% Similarity=-0.081 Sum_probs=6.5
Q ss_pred hhcCCCCceeccCCc
Q 037951 238 GLYFPNLKLFQTNEN 252 (627)
Q Consensus 238 ~~~~~~L~~L~l~~~ 252 (627)
...+++|++++++.+
T Consensus 212 a~gC~kL~~lNlSwc 226 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWC 226 (483)
T ss_pred HHhhhhHHHhhhccC
Confidence 333444444444443
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.38 E-value=0.00031 Score=61.60 Aligned_cols=83 Identities=24% Similarity=0.216 Sum_probs=38.0
Q ss_pred CCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-CCccCCCCCccEEEe
Q 037951 122 RLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNI-PDSLGQLKELKTLGI 200 (627)
Q Consensus 122 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l 200 (627)
+...+||++|.+. ....|..++.|.+|.+.+|.|+...|..-.-+++|..|.+.+|.+.... -.-+..+++|++|.+
T Consensus 43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4555566666554 1223445555555555555555333333333444555555555543110 012333444444444
Q ss_pred eCcccc
Q 037951 201 GGNNLS 206 (627)
Q Consensus 201 ~~n~~~ 206 (627)
-+|+++
T Consensus 121 l~Npv~ 126 (233)
T KOG1644|consen 121 LGNPVE 126 (233)
T ss_pred cCCchh
Confidence 444443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.25 E-value=0.0012 Score=55.85 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=20.8
Q ss_pred ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCC
Q 037951 484 PRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIR 541 (627)
Q Consensus 484 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~ 541 (627)
..|..+++++.+++..+ +.......|.++ .|+.+.+.. .++......|.++++|+
T Consensus 75 ~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 75 NAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 34555666666666554 432334455565 666666665 33334445556555553
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.94 E-value=0.0004 Score=63.64 Aligned_cols=62 Identities=27% Similarity=0.364 Sum_probs=30.8
Q ss_pred CCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCC--cCcccCCccccCCCCCCEEEccCcccc
Q 037951 71 NLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDN--SLVGKIPANLSYCSRLTVLVLGNNKLV 134 (627)
Q Consensus 71 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n--~i~~~~~~~~~~l~~L~~L~ls~n~l~ 134 (627)
.+..|..|++.+..++.. ..|..+++|+.|.++.| .+.+.++.-...+++|++|++++|++.
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 344455555555444311 22445556666666666 333333333344456666666665554
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.79 E-value=0.00064 Score=62.36 Aligned_cols=93 Identities=20% Similarity=0.187 Sum_probs=58.0
Q ss_pred CCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCc--cccccCCccccCCCCCCeeeCCCCCCCC-CCCCCC
Q 037951 89 IPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNN--KLVGSIPFEFVSLYKLKQLALPMNNLTG-GIPPFL 165 (627)
Q Consensus 89 ~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l 165 (627)
+......+..|+.|++.+..++.. ..+-.+++|+.|.++.| ++.+.++.-...+++|+++++++|++.- ..-..+
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl 112 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL 112 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence 444455566777777777666522 23556778888888888 5655555555666888888888887762 111224
Q ss_pred CCCCCCCEEECCCCCCCC
Q 037951 166 GNLTSLEVVSLAGNPFGG 183 (627)
Q Consensus 166 ~~l~~L~~L~L~~n~~~~ 183 (627)
..+.+|..|++.+|....
T Consensus 113 ~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 113 KELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhcchhhhhcccCCccc
Confidence 455666677777666553
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.40 E-value=0.00039 Score=74.02 Aligned_cols=38 Identities=29% Similarity=0.314 Sum_probs=17.3
Q ss_pred CCcccEEEccCcc-cccccchhHHhccccccEEEeeccc
Q 037951 319 CSKLQVLSLGGNQ-FRGALPHSIANLSSQLQILVLGTNQ 356 (627)
Q Consensus 319 ~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~ 356 (627)
+++|+.|.+.+|. +++..-..+....+.|++|++++|.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4555555555444 3433333333333345555555443
No 69
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.37 E-value=9e-05 Score=68.03 Aligned_cols=82 Identities=24% Similarity=0.218 Sum_probs=44.9
Q ss_pred CCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccC-CccccCCCCCCeee
Q 037951 73 SFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSI-PFEFVSLYKLKQLA 151 (627)
Q Consensus 73 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~l~~l~~L~~L~ 151 (627)
.+++.|++-+++++++ .-..+|+.|++|.|+-|+|+..-| +..|.+|++|+|..|.|.+.. ...+.++++|+.|+
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3556666666666532 123456666666666666663322 566666666666666654211 12345555556665
Q ss_pred CCCCCCC
Q 037951 152 LPMNNLT 158 (627)
Q Consensus 152 l~~n~l~ 158 (627)
|..|.-.
T Consensus 95 L~ENPCc 101 (388)
T KOG2123|consen 95 LDENPCC 101 (388)
T ss_pred hccCCcc
Confidence 5555443
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.30 E-value=0.0004 Score=73.92 Aligned_cols=65 Identities=23% Similarity=0.238 Sum_probs=32.6
Q ss_pred CCCCCcccEEEccCcc-cccccchhHHhccccccEEEeeccc-cccc-CcccccCCCCCCEEeCCCCc
Q 037951 316 LANCSKLQVLSLGGNQ-FRGALPHSIANLSSQLQILVLGTNQ-LYGS-IPSGIGNLVNLYSLQTEENQ 380 (627)
Q Consensus 316 l~~~~~L~~L~l~~n~-~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n~ 380 (627)
...+++|+.|+++.+. +++..-..+....++|+.|.+.+|. +++. +......++.|++|+++.|.
T Consensus 239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 3445666677776665 4544444444433356666655554 3321 11222345555666655553
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.19 E-value=0.00044 Score=63.62 Aligned_cols=81 Identities=20% Similarity=0.197 Sum_probs=37.2
Q ss_pred CcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCcccccc-chhhcCCCCCcEe
Q 037951 320 SKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSI-PKEMGKLLNLQGL 398 (627)
Q Consensus 320 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L 398 (627)
.+.++|+..+|.++++ .+..-.+.|++|.|+-|+++..-| +..|++|++|+|..|.+.... -..+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3445555555555422 122222355555555555543222 445555555555555544211 1233444555555
Q ss_pred eccCCcc
Q 037951 399 DFGGNHF 405 (627)
Q Consensus 399 ~L~~n~~ 405 (627)
.|..|.-
T Consensus 94 WL~ENPC 100 (388)
T KOG2123|consen 94 WLDENPC 100 (388)
T ss_pred hhccCCc
Confidence 5554443
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.53 E-value=0.00022 Score=63.73 Aligned_cols=102 Identities=21% Similarity=0.206 Sum_probs=62.9
Q ss_pred eeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcc
Q 037951 53 TCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNK 132 (627)
Q Consensus 53 ~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~ 132 (627)
+||++-..++.+....+..++..+.||++.|.+. .+-.-|+.++.+..|+++.|.+. .+|+.++....++.+++..|.
T Consensus 22 tc~~s~s~~s~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~ 99 (326)
T KOG0473|consen 22 TCDLSLSELSEIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNN 99 (326)
T ss_pred ccCCCHHHhcccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccc
Confidence 5666655555554456666777777777777654 34444666666777777776666 566666666666666666665
Q ss_pred ccccCCccccCCCCCCeeeCCCCCC
Q 037951 133 LVGSIPFEFVSLYKLKQLALPMNNL 157 (627)
Q Consensus 133 l~~~~~~~l~~l~~L~~L~l~~n~l 157 (627)
.. ..|.+++..+.++++++-.+.+
T Consensus 100 ~~-~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 100 HS-QQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred hh-hCCccccccCCcchhhhccCcc
Confidence 55 4555555555555555555543
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.97 E-value=0.01 Score=32.19 Aligned_cols=18 Identities=44% Similarity=0.791 Sum_probs=8.3
Q ss_pred CCEEEccCCcccccCCccc
Q 037951 492 LRCFDVSNNDLSGEIPSEL 510 (627)
Q Consensus 492 L~~L~Ls~n~l~~~~~~~l 510 (627)
|++||+++|+++ .+|..|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 444555555444 444333
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.67 E-value=0.00021 Score=74.07 Aligned_cols=60 Identities=22% Similarity=0.285 Sum_probs=29.0
Q ss_pred CCEEEccCCccccc----CCccccCC-CCCCEEECCCCcccccC----ChhccCCCCCCEEECCCCcCc
Q 037951 492 LRCFDVSNNDLSGE----IPSELGLC-SSLEEIYLAENFFNGFI----PSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 492 L~~L~Ls~n~l~~~----~~~~l~~l-~~L~~L~L~~n~i~~~~----~~~l~~l~~L~~L~ls~n~l~ 551 (627)
+.+|++++|.+.+. ....+..+ ..++.++++.|+|+... .+.+..++.++.+.++.|.+.
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44455555554422 12233333 45555666666555442 233344555666666655554
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.53 E-value=0.016 Score=31.42 Aligned_cols=19 Identities=42% Similarity=0.482 Sum_probs=10.5
Q ss_pred CCEEECCCCcccccCChhcc
Q 037951 516 LEEIYLAENFFNGFIPSFFR 535 (627)
Q Consensus 516 L~~L~L~~n~i~~~~~~~l~ 535 (627)
|++|++++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 556666666666 3444443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.23 E-value=0.087 Score=26.40 Aligned_cols=13 Identities=54% Similarity=0.805 Sum_probs=5.0
Q ss_pred CCCEEEccCCccc
Q 037951 491 ALRCFDVSNNDLS 503 (627)
Q Consensus 491 ~L~~L~Ls~n~l~ 503 (627)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555543
No 77
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.17 E-value=0.0014 Score=68.01 Aligned_cols=60 Identities=23% Similarity=0.248 Sum_probs=27.5
Q ss_pred CCEEeCCCCccccc----cchhhcCC-CCCcEeeccCCcccccCC----hhhhCCCCCCEEEccCCccc
Q 037951 371 LYSLQTEENQFTGS----IPKEMGKL-LNLQGLDFGGNHFSGEIP----STLGNLSSLYEIFLGDNNLS 430 (627)
Q Consensus 371 L~~L~l~~n~~~~~----~~~~~~~l-~~L~~L~L~~n~~~~~~~----~~~~~~~~L~~L~l~~n~~~ 430 (627)
+.++++..|.+.+. ....+..+ ..++.++++.|.+++.-. .....++.++++.++.|.+.
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44455555554322 12223333 445555555555553222 22334455555555555554
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.92 E-value=0.0041 Score=55.93 Aligned_cols=88 Identities=24% Similarity=0.210 Sum_probs=63.0
Q ss_pred ccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCC
Q 037951 92 EFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSL 171 (627)
Q Consensus 92 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 171 (627)
.+....+.+.||++.|++. .+...|+-+..|+.|+++.|.+. ..|..++....++++++..|..+ ..|.++++.+++
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 4566677788888888766 45556777777888888887776 66777777777777777776665 556777777777
Q ss_pred CEEECCCCCCC
Q 037951 172 EVVSLAGNPFG 182 (627)
Q Consensus 172 ~~L~L~~n~~~ 182 (627)
+++++-++.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 77777666654
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.43 E-value=0.058 Score=47.80 Aligned_cols=82 Identities=15% Similarity=0.203 Sum_probs=46.3
Q ss_pred CCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccC-Chhh-hCCCCCCEEEccCCc-cccccChhhcCCCCCCE
Q 037951 369 VNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEI-PSTL-GNLSSLYEIFLGDNN-LSGVIPSSLGNLERLAI 445 (627)
Q Consensus 369 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~-~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~ 445 (627)
..++.++-+++.+..+.-+.+..++.++.|.+.+|.-.+.. -+.+ +-.++|+.|++++|. |+......+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 34556666666665555555666666666666666532111 0111 124677777777666 66555556666677777
Q ss_pred EECcC
Q 037951 446 LEMFA 450 (627)
Q Consensus 446 L~l~~ 450 (627)
|.+.+
T Consensus 181 L~l~~ 185 (221)
T KOG3864|consen 181 LHLYD 185 (221)
T ss_pred HHhcC
Confidence 66654
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.63 E-value=0.5 Score=26.66 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=6.4
Q ss_pred CCCEEECCCCcccc
Q 037951 515 SLEEIYLAENFFNG 528 (627)
Q Consensus 515 ~L~~L~L~~n~i~~ 528 (627)
+|+.|+|++|.++.
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00370 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 44444444444443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.63 E-value=0.5 Score=26.66 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=6.4
Q ss_pred CCCEEECCCCcccc
Q 037951 515 SLEEIYLAENFFNG 528 (627)
Q Consensus 515 ~L~~L~L~~n~i~~ 528 (627)
+|+.|+|++|.++.
T Consensus 3 ~L~~L~L~~N~l~~ 16 (26)
T smart00369 3 NLRELDLSNNQLSS 16 (26)
T ss_pred CCCEEECCCCcCCc
Confidence 44444444444443
No 82
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.82 E-value=0.096 Score=46.47 Aligned_cols=35 Identities=23% Similarity=0.112 Sum_probs=20.7
Q ss_pred CCCCCEEeCCCC-ccccccchhhcCCCCCcEeeccC
Q 037951 368 LVNLYSLQTEEN-QFTGSIPKEMGKLLNLQGLDFGG 402 (627)
Q Consensus 368 l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~ 402 (627)
.++|+.|++++| +|+...-..+..+++|+.|.+.+
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 356666666666 45544445556666666666654
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=84.67 E-value=0.49 Score=26.07 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=10.2
Q ss_pred CcccEEEccCcccccccchh
Q 037951 320 SKLQVLSLGGNQFRGALPHS 339 (627)
Q Consensus 320 ~~L~~L~l~~n~~~~~~~~~ 339 (627)
++|++|+|++|++++.....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45666666666665544433
No 84
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.72 E-value=1 Score=25.32 Aligned_cols=13 Identities=46% Similarity=0.514 Sum_probs=5.9
Q ss_pred CCCEEeCCCCcCc
Q 037951 98 RLETLLLSDNSLV 110 (627)
Q Consensus 98 ~L~~L~L~~n~i~ 110 (627)
+|++|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 85
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.72 E-value=1 Score=25.32 Aligned_cols=13 Identities=46% Similarity=0.514 Sum_probs=5.9
Q ss_pred CCCEEeCCCCcCc
Q 037951 98 RLETLLLSDNSLV 110 (627)
Q Consensus 98 ~L~~L~L~~n~i~ 110 (627)
+|++|+|++|++.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=81.87 E-value=13 Score=37.91 Aligned_cols=83 Identities=16% Similarity=0.051 Sum_probs=40.0
Q ss_pred CCCEEEccCCcccccCCcc--ccCCCCCCEEECCCCcc---ccc--CChhc----cCCCCCCEEECCCCcCccccchhcc
Q 037951 491 ALRCFDVSNNDLSGEIPSE--LGLCSSLEEIYLAENFF---NGF--IPSFF----RTSRGIRKVDLSRNNFFGQIPIFLE 559 (627)
Q Consensus 491 ~L~~L~Ls~n~l~~~~~~~--l~~l~~L~~L~L~~n~i---~~~--~~~~l----~~l~~L~~L~ls~n~l~~~~p~~~~ 559 (627)
.+++|++.+|++.++.... ...-++.+.+++.+-.- .+. ..... ..-.-+..+.++.|+..........
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 4677777777666543332 23345555555543221 110 00000 1123356666777766543333222
Q ss_pred c---Cc-CCeeeCcCCcc
Q 037951 560 A---LS-LEYLNLSFNDF 573 (627)
Q Consensus 560 ~---~~-L~~L~ls~n~l 573 (627)
. .+ +.+|++++|..
T Consensus 435 ~l~stqtl~kldisgn~m 452 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGM 452 (553)
T ss_pred hhccCcccccccccCCCc
Confidence 2 12 77777777755
No 87
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=69.60 E-value=24 Score=36.13 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=26.0
Q ss_pred ccEEEeecccccccCc---ccccCCCCCCEEeCCCCcccc----ccchhhcCCCCCcEeeccCCcc
Q 037951 347 LQILVLGTNQLYGSIP---SGIGNLVNLYSLQTEENQFTG----SIPKEMGKLLNLQGLDFGGNHF 405 (627)
Q Consensus 347 L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~~ 405 (627)
+..+.++.|......- .....-+.+..|++++|.... .+|.....-..+..+..+.|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 4445555554432111 122334566667777665431 1233333333444444444443
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=67.50 E-value=4.8 Score=22.79 Aligned_cols=13 Identities=38% Similarity=0.544 Sum_probs=6.3
Q ss_pred CCCEEECCCCccc
Q 037951 515 SLEEIYLAENFFN 527 (627)
Q Consensus 515 ~L~~L~L~~n~i~ 527 (627)
+|+.|++++|+|+
T Consensus 3 ~L~~L~L~~NkI~ 15 (26)
T smart00365 3 NLEELDLSQNKIK 15 (26)
T ss_pred ccCEEECCCCccc
Confidence 4444555555443
No 89
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.09 E-value=3.9 Score=23.10 Aligned_cols=17 Identities=41% Similarity=0.772 Sum_probs=9.7
Q ss_pred CCCEEEccCCcccccCCc
Q 037951 491 ALRCFDVSNNDLSGEIPS 508 (627)
Q Consensus 491 ~L~~L~Ls~n~l~~~~~~ 508 (627)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4566666666665 4443
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=60.63 E-value=7 Score=22.47 Aligned_cols=13 Identities=54% Similarity=0.769 Sum_probs=7.4
Q ss_pred CCCEEEccCCccc
Q 037951 491 ALRCFDVSNNDLS 503 (627)
Q Consensus 491 ~L~~L~Ls~n~l~ 503 (627)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555666665554
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=39.60 E-value=22 Score=19.84 Aligned_cols=13 Identities=31% Similarity=0.480 Sum_probs=8.6
Q ss_pred CCCCCEEECCCCc
Q 037951 537 SRGIRKVDLSRNN 549 (627)
Q Consensus 537 l~~L~~L~ls~n~ 549 (627)
+++|+.|++++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 3567777777775
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=31.57 E-value=26 Score=36.66 Aligned_cols=65 Identities=18% Similarity=0.155 Sum_probs=38.5
Q ss_pred CCCCCCEEEccCCccccc--CCccccCCCCCCEEECCCCcccccCChhccC--CCCCCEEECCCCcCcc
Q 037951 488 NLKALRCFDVSNNDLSGE--IPSELGLCSSLEEIYLAENFFNGFIPSFFRT--SRGIRKVDLSRNNFFG 552 (627)
Q Consensus 488 ~l~~L~~L~Ls~n~l~~~--~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~--l~~L~~L~ls~n~l~~ 552 (627)
+.+.+..+.|++|++... +...-...+.|..|+|++|...-.....+.+ ..-|++|-+.||++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 456777888999987522 1112234578888888888222122222222 2347778888888865
No 93
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.93 E-value=26 Score=36.64 Aligned_cols=12 Identities=50% Similarity=0.545 Sum_probs=6.8
Q ss_pred ccEEEeeccccc
Q 037951 347 LQILVLGTNQLY 358 (627)
Q Consensus 347 L~~L~l~~n~l~ 358 (627)
|++|.+.+|++.
T Consensus 272 Leel~l~GNPlc 283 (585)
T KOG3763|consen 272 LEELVLEGNPLC 283 (585)
T ss_pred HHHeeecCCccc
Confidence 555555555554
Done!