Query 037951
Match_columns 627
No_of_seqs 413 out of 4247
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 09:52:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037951.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037951hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.8E-75 6.2E-80 652.1 49.5 593 8-611 3-750 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.7E-63 9.1E-68 554.0 41.0 519 72-603 76-722 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 2.4E-57 8.2E-62 502.0 48.7 542 55-600 31-625 (680)
4 3t6q_A CD180 antigen; protein- 100.0 3.8E-56 1.3E-60 485.9 44.2 510 51-578 14-564 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-54 3.9E-59 480.6 47.1 518 54-579 54-627 (680)
6 3t6q_A CD180 antigen; protein- 100.0 1E-54 3.6E-59 474.5 42.5 510 76-600 15-563 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 3E-54 1E-58 470.9 41.9 531 46-599 6-560 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-53 6.1E-58 464.8 40.9 506 74-596 12-533 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 4E-53 1.4E-57 476.9 41.3 529 47-600 2-563 (844)
10 4eco_A Uncharacterized protein 100.0 9.8E-53 3.4E-57 458.1 23.2 498 13-577 26-603 (636)
11 2z81_A CD282 antigen, TOLL-lik 100.0 2E-50 7E-55 435.4 37.4 492 46-555 3-514 (549)
12 3j0a_A TOLL-like receptor 5; m 100.0 5.1E-50 1.7E-54 451.6 33.4 504 54-578 29-564 (844)
13 4ecn_A Leucine-rich repeat pro 100.0 3.2E-50 1.1E-54 444.6 26.7 504 12-574 264-864 (876)
14 2z63_A TOLL-like receptor 4, v 100.0 2.9E-48 1E-52 420.7 39.4 507 53-580 11-537 (570)
15 2z63_A TOLL-like receptor 4, v 100.0 2.9E-48 9.9E-53 420.8 36.5 486 54-556 33-536 (570)
16 2z81_A CD282 antigen, TOLL-lik 100.0 3E-47 1E-51 410.6 31.1 485 75-578 7-514 (549)
17 4g8a_A TOLL-like receptor 4; l 100.0 4.5E-45 1.6E-49 401.3 40.9 532 51-600 33-583 (635)
18 2z7x_B TOLL-like receptor 1, v 100.0 3.2E-46 1.1E-50 399.5 27.7 462 76-578 3-485 (520)
19 4eco_A Uncharacterized protein 100.0 2.8E-47 9.4E-52 415.2 17.4 466 97-598 81-601 (636)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-45 5.4E-50 394.2 28.8 455 53-555 4-485 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-43 7.3E-48 388.0 38.4 506 54-576 57-582 (635)
22 4ecn_A Leucine-rich repeat pro 100.0 2E-44 6.8E-49 398.4 29.0 461 97-597 323-864 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9E-43 3.1E-47 375.8 25.7 178 393-577 331-513 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.4E-42 2.9E-46 368.2 29.6 456 53-555 35-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 3.1E-40 1.1E-44 347.2 28.0 391 45-458 6-412 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 1.7E-38 5.7E-43 334.0 32.9 390 76-555 13-412 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 3.6E-39 1.2E-43 335.8 22.1 416 71-597 9-429 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 7.6E-38 2.6E-42 325.8 22.9 411 95-610 9-427 (454)
29 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-37 4.4E-42 308.9 15.7 297 12-332 1-303 (313)
30 3bz5_A Internalin-J, INLJ; leu 100.0 1.1E-35 3.6E-40 309.9 28.1 360 66-510 35-394 (457)
31 1o6v_A Internalin A; bacterial 100.0 7.7E-35 2.6E-39 306.2 34.1 346 95-528 44-389 (466)
32 2id5_A Lingo-1, leucine rich r 100.0 1.5E-35 5E-40 313.2 27.7 347 220-602 14-361 (477)
33 3bz5_A Internalin-J, INLJ; leu 100.0 4.4E-35 1.5E-39 305.3 27.9 362 86-556 31-392 (457)
34 1o6v_A Internalin A; bacterial 100.0 2.6E-34 8.8E-39 302.2 33.6 212 71-302 44-255 (466)
35 3o6n_A APL1; leucine-rich repe 100.0 2.4E-34 8.3E-39 295.5 27.3 344 37-454 3-352 (390)
36 2id5_A Lingo-1, leucine rich r 100.0 4.1E-34 1.4E-38 302.2 29.2 302 73-430 32-333 (477)
37 3oja_B Anopheles plasmodium-re 100.0 5.5E-34 1.9E-38 308.8 27.4 350 31-430 3-358 (597)
38 1ogq_A PGIP-2, polygalacturona 100.0 3.7E-34 1.3E-38 284.0 22.1 253 346-601 51-308 (313)
39 3o6n_A APL1; leucine-rich repe 100.0 2.8E-32 9.7E-37 280.1 24.2 333 216-600 44-377 (390)
40 4fmz_A Internalin; leucine ric 100.0 9.8E-32 3.3E-36 271.7 27.7 307 69-430 40-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 2.4E-32 8.2E-37 295.9 24.1 321 262-609 71-392 (597)
42 4fmz_A Internalin; leucine ric 100.0 4E-31 1.4E-35 267.2 29.7 284 262-574 62-346 (347)
43 1z7x_W Ribonuclease inhibitor; 100.0 1.7E-34 5.9E-39 304.0 -3.1 384 169-575 3-441 (461)
44 4fcg_A Uncharacterized protein 100.0 2.5E-32 8.7E-37 272.3 11.6 281 10-302 20-313 (328)
45 2ft3_A Biglycan; proteoglycan, 100.0 3.1E-30 1.1E-34 258.6 25.6 288 74-404 34-331 (332)
46 1z7x_W Ribonuclease inhibitor; 100.0 3.9E-33 1.4E-37 293.6 1.9 351 241-596 27-439 (461)
47 1xku_A Decorin; proteoglycan, 100.0 1.2E-29 4.1E-34 254.2 26.3 294 75-404 33-330 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-29 5.3E-34 253.6 24.1 129 442-572 194-331 (332)
49 1xku_A Decorin; proteoglycan, 100.0 4.9E-29 1.7E-33 249.8 27.5 128 442-571 193-329 (330)
50 2z80_A TOLL-like receptor 2, v 100.0 2.6E-29 8.8E-34 254.2 19.3 289 38-337 21-318 (353)
51 3ogk_B Coronatine-insensitive 100.0 7.7E-31 2.6E-35 285.3 2.9 379 167-552 110-527 (592)
52 2z66_A Variable lymphocyte rec 100.0 5.4E-28 1.8E-32 239.5 19.2 229 346-576 29-263 (306)
53 3ogk_B Coronatine-insensitive 100.0 1.5E-30 5E-35 283.0 -1.1 428 66-548 66-548 (592)
54 1ozn_A Reticulon 4 receptor; N 100.0 1.9E-27 6.5E-32 232.9 21.0 266 323-594 14-284 (285)
55 2z66_A Variable lymphocyte rec 99.9 6E-27 2.1E-31 231.9 21.3 213 365-579 74-292 (306)
56 1ozn_A Reticulon 4 receptor; N 99.9 5.1E-27 1.7E-31 229.9 19.6 254 347-604 13-268 (285)
57 4fcg_A Uncharacterized protein 99.9 5.4E-27 1.8E-31 233.8 19.8 222 346-573 82-313 (328)
58 2z80_A TOLL-like receptor 2, v 99.9 2.5E-27 8.5E-32 239.7 15.7 278 289-578 30-318 (353)
59 3zyi_A Leucine-rich repeat-con 99.9 4.8E-26 1.6E-30 238.2 24.2 247 292-551 56-303 (452)
60 3zyj_A Leucine-rich repeat-con 99.9 5.7E-26 1.9E-30 236.7 24.3 247 292-551 45-292 (440)
61 3zyj_A Leucine-rich repeat-con 99.9 5.5E-26 1.9E-30 236.9 24.1 248 321-575 44-293 (440)
62 3zyi_A Leucine-rich repeat-con 99.9 8.7E-26 3E-30 236.2 24.9 244 54-333 59-303 (452)
63 3o53_A Protein LRIM1, AGAP0063 99.9 6.7E-27 2.3E-31 232.4 10.2 245 318-578 32-280 (317)
64 1wwl_A Monocyte differentiatio 99.9 2.1E-27 7.1E-32 235.5 5.9 243 320-574 43-309 (312)
65 2p1m_B Transport inhibitor res 99.9 3.8E-29 1.3E-33 272.1 -7.3 418 76-551 46-519 (594)
66 1wwl_A Monocyte differentiatio 99.9 3.1E-27 1E-31 234.3 4.4 227 70-304 40-288 (312)
67 2p1m_B Transport inhibitor res 99.9 1.8E-28 6.1E-33 266.8 -5.2 360 68-455 61-470 (594)
68 3g06_A SSPH2 (leucine-rich rep 99.9 4.6E-25 1.6E-29 236.3 20.3 165 35-230 10-174 (622)
69 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-26 5.8E-31 229.5 8.5 264 321-600 11-278 (317)
70 3oja_A Leucine-rich immune mol 99.9 1.7E-25 5.8E-30 235.1 13.7 235 319-569 33-270 (487)
71 3oja_A Leucine-rich immune mol 99.9 2.4E-25 8.3E-30 233.9 14.5 240 346-600 35-285 (487)
72 2o6q_A Variable lymphocyte rec 99.9 7.9E-24 2.7E-28 205.1 24.0 218 44-304 2-219 (270)
73 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-23 5.7E-28 224.2 27.1 265 97-437 40-304 (622)
74 2z62_A TOLL-like receptor 4, v 99.9 1.4E-23 4.8E-28 204.3 20.3 207 370-578 29-241 (276)
75 2z62_A TOLL-like receptor 4, v 99.9 1.1E-23 3.9E-28 204.9 18.4 208 346-555 29-241 (276)
76 2o6q_A Variable lymphocyte rec 99.9 1.8E-22 6.2E-27 195.5 21.9 181 370-551 38-218 (270)
77 1p9a_G Platelet glycoprotein I 99.9 2.9E-22 9.8E-27 195.7 21.0 198 346-551 11-208 (290)
78 1p9a_G Platelet glycoprotein I 99.9 3.3E-22 1.1E-26 195.3 20.4 203 365-575 6-209 (290)
79 3rfs_A Internalin B, repeat mo 99.9 1.8E-22 6.3E-27 195.6 17.0 221 347-580 21-241 (272)
80 3rfs_A Internalin B, repeat mo 99.9 2.9E-22 1E-26 194.2 17.9 211 69-291 37-247 (272)
81 2ast_B S-phase kinase-associat 99.9 7E-23 2.4E-27 205.7 13.5 251 321-580 48-312 (336)
82 2ca6_A RAN GTPase-activating p 99.9 1.1E-23 3.9E-28 215.5 7.5 188 390-578 91-320 (386)
83 3m19_A Variable lymphocyte rec 99.9 1.6E-21 5.5E-26 186.6 19.9 184 46-232 4-194 (251)
84 2ca6_A RAN GTPase-activating p 99.9 7.8E-24 2.7E-28 216.8 3.6 189 366-555 91-320 (386)
85 3goz_A Leucine-rich repeat-con 99.9 4.3E-23 1.5E-27 209.0 8.1 229 347-576 24-299 (362)
86 4glp_A Monocyte differentiatio 99.9 7.1E-22 2.4E-26 195.6 15.1 224 320-551 64-307 (310)
87 3goz_A Leucine-rich repeat-con 99.9 1.1E-22 3.9E-27 205.9 9.3 263 270-555 2-301 (362)
88 3m19_A Variable lymphocyte rec 99.9 4.6E-21 1.6E-25 183.4 18.3 159 394-553 36-194 (251)
89 2xwt_C Thyrotropin receptor; s 99.9 1.8E-21 6E-26 185.0 14.9 177 370-551 32-218 (239)
90 2xwt_C Thyrotropin receptor; s 99.9 2.8E-21 9.5E-26 183.6 15.9 197 73-300 31-236 (239)
91 4glp_A Monocyte differentiatio 99.9 6.2E-22 2.1E-26 196.0 11.2 223 346-595 65-305 (310)
92 2ast_B S-phase kinase-associat 99.9 1.9E-22 6.6E-27 202.5 6.8 254 268-559 49-314 (336)
93 1h6u_A Internalin H; cell adhe 99.8 2.2E-20 7.4E-25 184.3 19.0 190 346-552 42-231 (308)
94 1h6u_A Internalin H; cell adhe 99.8 2.2E-20 7.6E-25 184.2 16.5 206 351-575 25-231 (308)
95 2o6s_A Variable lymphocyte rec 99.8 7.4E-20 2.5E-24 169.7 16.2 181 46-238 6-186 (208)
96 2o6s_A Variable lymphocyte rec 99.8 1.5E-19 5E-24 167.7 17.9 181 76-267 10-190 (208)
97 4ay9_X Follicle-stimulating ho 99.8 7.9E-20 2.7E-24 184.0 14.9 238 323-571 12-256 (350)
98 3e6j_A Variable lymphocyte rec 99.8 3.5E-19 1.2E-23 167.5 16.7 166 36-207 8-173 (229)
99 4ay9_X Follicle-stimulating ho 99.8 4.9E-19 1.7E-23 178.2 16.7 203 47-255 9-215 (350)
100 3cvr_A Invasion plasmid antige 99.8 2E-18 6.7E-23 182.6 17.6 187 346-561 60-253 (571)
101 2v9t_B SLIT homolog 2 protein 99.8 7.4E-18 2.5E-22 157.2 17.8 155 47-206 11-165 (220)
102 3cvr_A Invasion plasmid antige 99.8 1.9E-18 6.4E-23 182.8 15.2 186 74-288 60-252 (571)
103 2v9t_B SLIT homolog 2 protein 99.8 6.9E-18 2.4E-22 157.4 17.0 153 76-231 14-166 (220)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 7.8E-18 2.7E-22 157.1 16.9 156 47-207 11-167 (220)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 1E-17 3.4E-22 156.4 16.2 156 76-234 14-170 (220)
106 3e6j_A Variable lymphocyte rec 99.7 3.4E-17 1.1E-21 153.9 17.6 155 75-233 21-175 (229)
107 1h6t_A Internalin B; cell adhe 99.7 9.8E-18 3.4E-22 163.7 13.9 167 346-551 47-213 (291)
108 2xot_A Amphoterin-induced prot 99.7 2.2E-17 7.4E-22 166.8 16.2 176 372-551 21-202 (361)
109 2xot_A Amphoterin-induced prot 99.7 1.2E-17 4.2E-22 168.6 14.4 173 55-230 24-202 (361)
110 1h6t_A Internalin B; cell adhe 99.7 4.9E-17 1.7E-21 158.7 17.9 173 315-503 41-213 (291)
111 1m9s_A Internalin B; cell inva 99.7 1.2E-17 4.2E-22 178.7 14.0 169 368-551 42-210 (605)
112 4ezg_A Putative uncharacterize 99.7 1.4E-17 4.8E-22 152.7 10.0 153 70-230 41-194 (197)
113 1m9s_A Internalin B; cell inva 99.7 5.2E-17 1.8E-21 173.8 14.7 184 56-256 28-211 (605)
114 4b8c_D Glucose-repressible alc 99.7 3.3E-18 1.1E-22 187.8 4.6 235 14-276 129-369 (727)
115 4ezg_A Putative uncharacterize 99.7 5.4E-17 1.8E-21 148.8 11.9 110 437-551 84-194 (197)
116 1xeu_A Internalin C; cellular 99.7 5.4E-17 1.9E-21 155.8 10.8 167 346-552 20-186 (263)
117 1w8a_A SLIT protein; signaling 99.7 7E-17 2.4E-21 147.2 10.6 132 420-555 11-143 (192)
118 1xeu_A Internalin C; cellular 99.7 1.9E-16 6.4E-21 152.1 13.2 162 56-232 26-187 (263)
119 1dce_A Protein (RAB geranylger 99.7 1.4E-18 4.7E-23 184.9 -4.0 202 316-553 345-548 (567)
120 3sb4_A Hypothetical leucine ri 99.7 4.7E-17 1.6E-21 162.2 5.9 284 72-399 24-327 (329)
121 1w8a_A SLIT protein; signaling 99.7 1.3E-15 4.4E-20 138.7 14.7 155 444-602 11-167 (192)
122 1dce_A Protein (RAB geranylger 99.7 5.5E-18 1.9E-22 180.3 -1.4 201 366-590 346-566 (567)
123 2ell_A Acidic leucine-rich nuc 99.6 4.8E-16 1.6E-20 138.5 9.9 133 72-206 23-160 (168)
124 4b8c_D Glucose-repressible alc 99.6 6.6E-17 2.2E-21 177.6 4.9 142 386-532 217-359 (727)
125 2wfh_A SLIT homolog 2 protein 99.6 5.8E-15 2E-19 134.3 14.9 127 76-206 13-139 (193)
126 2je0_A Acidic leucine-rich nuc 99.6 5.7E-16 2E-20 135.0 6.9 128 72-201 16-148 (149)
127 2o6r_A Variable lymphocyte rec 99.6 8.5E-15 2.9E-19 131.6 14.1 131 47-182 7-137 (177)
128 3sb4_A Hypothetical leucine ri 99.6 1.5E-14 5E-19 144.1 16.5 219 241-472 100-327 (329)
129 2ell_A Acidic leucine-rich nuc 99.6 8.8E-15 3E-19 130.3 12.4 130 442-574 25-160 (168)
130 2o6r_A Variable lymphocyte rec 99.6 1.9E-14 6.4E-19 129.3 14.7 130 75-207 9-138 (177)
131 2wfh_A SLIT homolog 2 protein 99.6 2.3E-14 7.9E-19 130.3 14.3 131 47-183 10-140 (193)
132 4fs7_A Uncharacterized protein 99.6 1.5E-13 5.1E-18 140.5 21.8 237 188-446 157-393 (394)
133 2je0_A Acidic leucine-rich nuc 99.6 5.3E-15 1.8E-19 128.8 8.8 64 483-546 81-148 (149)
134 4fdw_A Leucine rich hypothetic 99.6 4.8E-13 1.6E-17 136.0 24.1 266 73-358 113-383 (401)
135 4fdw_A Leucine rich hypothetic 99.6 3.8E-13 1.3E-17 136.7 22.5 268 94-382 110-383 (401)
136 4fs7_A Uncharacterized protein 99.6 3.1E-13 1E-17 138.1 21.9 236 210-467 155-390 (394)
137 1a9n_A U2A', U2A'; complex (nu 99.5 2E-14 6.9E-19 128.9 7.4 132 68-205 14-152 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-13 3.7E-18 124.1 9.3 62 487-550 85-152 (176)
139 1ds9_A Outer arm dynein; leuci 99.4 1.5E-15 5.3E-20 139.1 -4.6 147 392-544 17-180 (198)
140 3g39_A Variable lymphocyte rec 99.4 1.2E-12 4E-17 116.3 12.7 105 76-183 12-116 (170)
141 1ds9_A Outer arm dynein; leuci 99.4 3.4E-15 1.2E-19 136.9 -4.3 133 388-528 43-186 (198)
142 2r9u_A Variable lymphocyte rec 99.4 2E-12 6.9E-17 115.2 12.7 104 76-182 15-118 (174)
143 3g39_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 113.5 12.7 105 99-206 11-115 (170)
144 4gt6_A Cell surface protein; l 99.4 9E-11 3.1E-15 119.8 23.9 329 90-451 56-388 (394)
145 4gt6_A Cell surface protein; l 99.4 1.5E-10 5.1E-15 118.1 25.2 336 109-502 51-390 (394)
146 2r9u_A Variable lymphocyte rec 99.3 6.4E-12 2.2E-16 112.0 12.7 104 100-206 15-118 (174)
147 3un9_A NLR family member X1; l 99.3 2.5E-13 8.7E-18 136.6 -0.6 44 486-529 207-254 (372)
148 3un9_A NLR family member X1; l 99.3 1E-12 3.4E-17 132.3 1.9 160 392-552 71-253 (372)
149 2ifg_A High affinity nerve gro 99.2 8.4E-11 2.9E-15 117.9 11.3 107 47-158 8-116 (347)
150 2ifg_A High affinity nerve gro 99.1 1.6E-10 5.4E-15 115.9 11.9 105 76-183 11-117 (347)
151 4h09_A Hypothetical leucine ri 99.1 2E-08 6.8E-13 101.9 23.9 84 364-449 258-341 (379)
152 4h09_A Hypothetical leucine ri 99.0 5E-08 1.7E-12 98.9 24.2 146 285-442 212-357 (379)
153 2ra8_A Uncharacterized protein 99.0 8E-10 2.7E-14 110.0 8.2 164 386-572 165-341 (362)
154 2ra8_A Uncharacterized protein 98.8 8.4E-09 2.9E-13 102.6 7.0 160 363-549 166-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 8.3E-08 2.8E-12 86.0 3.4 118 435-573 30-163 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 1.1E-07 3.9E-12 85.2 2.4 62 369-430 93-164 (185)
157 3rw6_A Nuclear RNA export fact 98.2 3.9E-07 1.3E-11 85.8 2.1 67 487-555 167-237 (267)
158 3e4g_A ATP synthase subunit S, 98.1 1E-06 3.5E-11 76.7 3.6 83 346-428 62-150 (176)
159 3rw6_A Nuclear RNA export fact 98.1 2.5E-06 8.7E-11 80.2 5.5 102 72-175 140-257 (267)
160 3e4g_A ATP synthase subunit S, 98.1 1E-06 3.4E-11 76.7 2.4 83 469-551 64-152 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.5 6.9E-05 2.4E-09 66.4 3.9 63 486-548 66-136 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 7.9E-05 2.7E-09 66.1 2.0 45 289-335 40-85 (197)
163 3rfe_A Platelet glycoprotein I 96.7 0.0029 9.9E-08 52.2 6.5 56 494-551 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.005 1.7E-07 50.8 6.0 36 98-133 32-67 (130)
165 2lz0_A Uncharacterized protein 60.0 21 0.00072 27.1 6.1 42 88-130 11-52 (100)
166 2lz0_A Uncharacterized protein 58.7 19 0.00065 27.4 5.6 40 386-426 13-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.8e-75 Score=652.10 Aligned_cols=593 Identities=32% Similarity=0.490 Sum_probs=502.9
Q ss_pred HHhhhcCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCccccee--------ecCCCCccee---cc----------
Q 037951 8 LLQVAAFEEGDLAALQAFKSMISHDPQGILNSWNDSRHFCEWEGITC--------DLRSKALSGL---LS---------- 66 (627)
Q Consensus 8 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~~~~~~c--------~l~~~~l~~~---~~---------- 66 (627)
.++.+++.++|++||++||+.+. ||. ++.+|+...+||.|.||+| |++++.+.|. ++
T Consensus 3 ~~~~~~~~~~~~~all~~k~~~~-~~~-~l~~W~~~~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~ 80 (768)
T 3rgz_A 3 QASPSQSLYREIHQLISFKDVLP-DKN-LLPDWSSNKNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE 80 (768)
T ss_dssp -----CCHHHHHHHHHHHHTTCS-CTT-SSTTCCTTSCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred cCccccCCHHHHHHHHHHHhhCC-Ccc-cccCCCCCCCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence 45667778889999999999997 777 8999998889999999999 5667777775 33
Q ss_pred -------------cccCCCCCCCEEECCCCCCcccCCc--ccCCCCCCCEEeCCCCcCcccCCccc-cCCCCCCEEEccC
Q 037951 67 -------------PQIGNLSFLREINLMNNTIQGEIPL--EFGRLRRLETLLLSDNSLVGKIPANL-SYCSRLTVLVLGN 130 (627)
Q Consensus 67 -------------~~l~~l~~L~~L~Ls~~~~~~~~~~--~~~~l~~L~~L~L~~n~i~~~~~~~~-~~l~~L~~L~ls~ 130 (627)
..+.++++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|++|++++
T Consensus 81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 4677888899999999988887777 78888888888888888877666654 6667777777777
Q ss_pred ccccccCCcc-------------------------ccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q 037951 131 NKLVGSIPFE-------------------------FVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNI 185 (627)
Q Consensus 131 n~l~~~~~~~-------------------------l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~ 185 (627)
|++++..+.. +..+++|++|++++|.+.+.+|. ++++++|++|++++|.+.+..
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc
Confidence 7665444332 25678888888899999877777 999999999999999999888
Q ss_pred CCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCC
Q 037951 186 PDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNA 265 (627)
Q Consensus 186 ~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 265 (627)
|..+..+++|++|++++|.+.+.+|.. .+++|+.|++++|.+.+.+|..+...+++|++|++++|.+++.+|..+..+
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l 317 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGC
T ss_pred cHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcC
Confidence 889999999999999999988777665 788888888888888888888877656888888888888888888888888
Q ss_pred CCCcEeecccccccccCccC-cCCCCCcCEEeccCccCCCCCCCCc-------------------cccccCCC--CCccc
Q 037951 266 SKLEYVEIASNSFFGKLSVN-FGGMKNLSYLILEYNNLGSGESDEM-------------------GFMNSLAN--CSKLQ 323 (627)
Q Consensus 266 ~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~-------------------~~~~~l~~--~~~L~ 323 (627)
++|++|++++|.+.+.+|.. +..+++|++|++++|.+++..+... ..+..+.. +++|+
T Consensus 318 ~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~ 397 (768)
T 3rgz_A 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397 (768)
T ss_dssp TTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC
T ss_pred CCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc
Confidence 88888888888887666654 7788888888888887764222111 11222222 67788
Q ss_pred EEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCC
Q 037951 324 VLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGN 403 (627)
Q Consensus 324 ~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 403 (627)
+|++++|.+++.+|..+..+. +|++|++++|.+++.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|
T Consensus 398 ~L~L~~n~l~~~~p~~l~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 398 ELYLQNNGFTGKIPPTLSNCS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp EEECCSSEEEEECCGGGGGCT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred EEECCCCccccccCHHHhcCC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 999999988888888888887 8999999999999889999999999999999999999889999999999999999999
Q ss_pred cccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCC
Q 037951 404 HFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIP 483 (627)
Q Consensus 404 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~ 483 (627)
++.+.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++.+.+|..+..++++ ++|++++|++.|.+|
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIP 555 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCC
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCC
Confidence 9998999999999999999999999999999999999999999999999999999999999999 899999999887666
Q ss_pred cc----------------------------------------------------------------------ccCCCCCC
Q 037951 484 PR----------------------------------------------------------------------IGNLKALR 493 (627)
Q Consensus 484 ~~----------------------------------------------------------------------l~~l~~L~ 493 (627)
.. +..+++|+
T Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 556 AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp GGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCC
T ss_pred hHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccccc
Confidence 53 33457899
Q ss_pred EEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCc
Q 037951 494 CFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFND 572 (627)
Q Consensus 494 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~ 572 (627)
.||+++|++++.+|..++.++.|+.|+|++|.+++.+|..++.+++|++||+++|++++.+|..+..++ |++||+++|+
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998 9999999999
Q ss_pred ccccCCCCCccCCCCccccccCCCCcccCCCCCCCCCCC
Q 037951 573 FEGRLPTRGIFANASAISVGGCNRLCGGIHELQLPKCPE 611 (627)
Q Consensus 573 l~~~~p~~~~~~~l~~l~~~~n~~l~~~~~~l~i~~c~~ 611 (627)
++|.+|.++.+.++...++.|||.+||.+ +..|+.
T Consensus 716 l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~----l~~C~~ 750 (768)
T 3rgz_A 716 LSGPIPEMGQFETFPPAKFLNNPGLCGYP----LPRCDP 750 (768)
T ss_dssp EEEECCSSSSGGGSCGGGGCSCTEEESTT----SCCCCS
T ss_pred ccccCCCchhhccCCHHHhcCCchhcCCC----CcCCCC
Confidence 99999999999999999999999999974 347863
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.7e-63 Score=554.02 Aligned_cols=519 Identities=33% Similarity=0.477 Sum_probs=435.2
Q ss_pred CCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCc--cccCCCCCCEEEccCccccccCCccc-cCCCCCC
Q 037951 72 LSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPA--NLSYCSRLTVLVLGNNKLVGSIPFEF-VSLYKLK 148 (627)
Q Consensus 72 l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~l-~~l~~L~ 148 (627)
+++|+.++++.+.+. ..|..|+++++|++|+|++|.+++.+|. .++++++|++|++++|.+.+..|..+ .++++|+
T Consensus 76 L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 154 (768)
T 3rgz_A 76 LTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154 (768)
T ss_dssp CTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCS
T ss_pred cCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCC
Confidence 345555555555543 3557899999999999999999988888 89999999999999999987777766 7889999
Q ss_pred eeeCCCCCCCCCCCCC-------------------------CCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCc
Q 037951 149 QLALPMNNLTGGIPPF-------------------------LGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGN 203 (627)
Q Consensus 149 ~L~l~~n~l~~~~~~~-------------------------l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 203 (627)
+|++++|.+++..+.. +.++++|++|++++|.+.+.+|. +.++++|++|++++|
T Consensus 155 ~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n 233 (768)
T 3rgz_A 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN 233 (768)
T ss_dssp EEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred EEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC
Confidence 9999988876543322 25678899999999999987776 999999999999999
Q ss_pred cccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCC-CCCcEeecccccccccC
Q 037951 204 NLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNA-SKLEYVEIASNSFFGKL 282 (627)
Q Consensus 204 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~ 282 (627)
.+++.+|..+..+++|+.|++++|.+.+.+|.. .+++|++|++++|.+++.+|..+... ++|++|++++|.+.+..
T Consensus 234 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~ 310 (768)
T 3rgz_A 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAV 310 (768)
T ss_dssp CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECC
T ss_pred cCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCcc
Confidence 999989999999999999999999999888876 48999999999999999999988775 99999999999999999
Q ss_pred ccCcCCCCCcCEEeccCccCCCCCCCCcccccc-CCCCCcccEEEccCcccccccchhHHhccc----------------
Q 037951 283 SVNFGGMKNLSYLILEYNNLGSGESDEMGFMNS-LANCSKLQVLSLGGNQFRGALPHSIANLSS---------------- 345 (627)
Q Consensus 283 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~---------------- 345 (627)
|..++.+++|++|++++|.+.+ .++.. +..+++|++|++++|.+++.+|..+.....
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~------~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~ 384 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSG------ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEE------ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC
T ss_pred chHHhcCCCccEEECCCCcccC------cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc
Confidence 9999999999999999999874 22322 667788888888888877777776665532
Q ss_pred ----------cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhC
Q 037951 346 ----------QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGN 415 (627)
Q Consensus 346 ----------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 415 (627)
+|++|++++|.+++.+|..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+.+|..+..
T Consensus 385 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 464 (768)
T 3rgz_A 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464 (768)
T ss_dssp CTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcC
Confidence 4555666666666666777777788888888888887777888888888888888888888888888888
Q ss_pred CCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEE
Q 037951 416 LSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCF 495 (627)
Q Consensus 416 ~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L 495 (627)
+++|++|++++|.+++..|..+..+++|++|++++|++.+.+|..+..++++ ++|++++|++.+.+|..+.++++|++|
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-~~L~L~~N~l~~~~p~~l~~l~~L~~L 543 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENL-AILKLSNNSFSGNIPAELGDCRSLIWL 543 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC-CEEECCSSCCEEECCGGGGGCTTCCEE
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCC-CEEECCCCcccCcCCHHHcCCCCCCEE
Confidence 8888888888888888888888888888888888888888888888888888 888888888888888888888899999
Q ss_pred EccCCcccccCCccc-----------------------------------------------------------------
Q 037951 496 DVSNNDLSGEIPSEL----------------------------------------------------------------- 510 (627)
Q Consensus 496 ~Ls~n~l~~~~~~~l----------------------------------------------------------------- 510 (627)
++++|++++.+|..+
T Consensus 544 ~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~ 623 (768)
T 3rgz_A 544 DLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGH 623 (768)
T ss_dssp ECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEE
T ss_pred ECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceeccc
Confidence 999888877666543
Q ss_pred -----cCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCC-Ccc
Q 037951 511 -----GLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTR-GIF 583 (627)
Q Consensus 511 -----~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~-~~~ 583 (627)
+.+++|++|++++|++++.+|..++.+++|+.|++++|.+++.+|..+..++ |+.||+++|+++|.+|.. ..+
T Consensus 624 ~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 624 TSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp CCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred CchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence 3356788899999999999999999999999999999999999999999888 999999999999999954 667
Q ss_pred CCCCccccccCCCCcccCCC
Q 037951 584 ANASAISVGGCNRLCGGIHE 603 (627)
Q Consensus 584 ~~l~~l~~~~n~~l~~~~~~ 603 (627)
++|+.+++++|+ +.|.+|+
T Consensus 704 ~~L~~L~ls~N~-l~g~iP~ 722 (768)
T 3rgz_A 704 TMLTEIDLSNNN-LSGPIPE 722 (768)
T ss_dssp CCCSEEECCSSE-EEEECCS
T ss_pred CCCCEEECcCCc-ccccCCC
Confidence 889999999995 7788775
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.4e-57 Score=502.00 Aligned_cols=542 Identities=21% Similarity=0.203 Sum_probs=401.5
Q ss_pred ecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcccc
Q 037951 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLV 134 (627)
Q Consensus 55 ~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~ 134 (627)
+++++.+++..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..+..|+++++|++|++++|++.
T Consensus 31 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 110 (680)
T 1ziw_A 31 NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110 (680)
T ss_dssp ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred ECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC
Confidence 66666666666666777777777777777776666666677777777777777766444445677777777777777776
Q ss_pred ccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccC--CCCCccEEEeeCccccccCCcc
Q 037951 135 GSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLG--QLKELKTLGIGGNNLSGSIPPS 212 (627)
Q Consensus 135 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~--~l~~L~~L~l~~n~~~~~~~~~ 212 (627)
+..+..|+++++|++|++++|.+++..+..++++++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 190 (680)
T 1ziw_A 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGC 190 (680)
T ss_dssp CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG
T ss_pred ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhh
Confidence 55556677777777777777777666666666777777777777776655444433 3466777777777666555555
Q ss_pred ccCC---------------------------CCCcEEEeecccCccCCChhhhhcC--CCCceeccCCccccccCCcccc
Q 037951 213 IYNL---------------------------SFLVIFSVSENQMHGSLPPSLGLYF--PNLKLFQTNENFFSGSIPISLS 263 (627)
Q Consensus 213 l~~l---------------------------~~L~~L~l~~n~l~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~ 263 (627)
+..+ ++|+.|++++|.+.+..|..+.. + ++|++|++++|.+++..+..+.
T Consensus 191 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~-l~~~~L~~L~Ls~n~l~~~~~~~~~ 269 (680)
T 1ziw_A 191 FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG-LKWTNLTMLDLSYNNLNVVGNDSFA 269 (680)
T ss_dssp GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG-GGGSCCCEEECTTSCCCEECTTTTT
T ss_pred hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc-cCcCCCCEEECCCCCcCccCccccc
Confidence 4433 34455555555555544444433 2 3467777777766666666666
Q ss_pred CCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCcccc----ccCCCCCcccEEEccCcccccccchh
Q 037951 264 NASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFM----NSLANCSKLQVLSLGGNQFRGALPHS 339 (627)
Q Consensus 264 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~n~~~~~~~~~ 339 (627)
.+++|++|++++|.+.+..+..+.++++|+.|+++++....... ...++ ..+..+++|++|++++|.+++..+..
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 348 (680)
T 1ziw_A 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS-LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM 348 (680)
T ss_dssp TCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT
T ss_pred CcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc-cccccccChhhcccCCCCCEEECCCCccCCCChhH
Confidence 67777777777776666666666677777777776553321000 00111 15667888889999888888777777
Q ss_pred HHhccccccEEEeecccccc--cCcccccC--CCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCC-hhhh
Q 037951 340 IANLSSQLQILVLGTNQLYG--SIPSGIGN--LVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIP-STLG 414 (627)
Q Consensus 340 ~~~~~~~L~~L~l~~n~l~~--~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~ 414 (627)
+..+. +|++|++++|.+.. .....+.. .++|+.|++++|++++..+..+..+++|+.|++++|.+.+.++ ..|.
T Consensus 349 ~~~l~-~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 427 (680)
T 1ziw_A 349 FTGLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427 (680)
T ss_dssp TTTCT-TCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT
T ss_pred hcccc-CCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc
Confidence 77776 78999998886532 12222322 3588999999999998888899999999999999999987665 6788
Q ss_pred CCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCc--ccCCccccccccCccEEEccCCccccCCCccccCCCCC
Q 037951 415 NLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELS--GTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKAL 492 (627)
Q Consensus 415 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L 492 (627)
.+++|++|++++|++++..+..+..+++|+.|++++|.+. +.+|..+..++++ ++|++++|++.+..+..+..+++|
T Consensus 428 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L-~~L~Ls~N~l~~i~~~~~~~l~~L 506 (680)
T 1ziw_A 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL-TILDLSNNNIANINDDMLEGLEKL 506 (680)
T ss_dssp TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC-CEEECCCCCCCcCChhhhcccccc
Confidence 9999999999999999888889999999999999999886 5678889999999 999999999998888889999999
Q ss_pred CEEEccCCcccccCC--------ccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-C
Q 037951 493 RCFDVSNNDLSGEIP--------SELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-L 563 (627)
Q Consensus 493 ~~L~Ls~n~l~~~~~--------~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L 563 (627)
++|++++|++++..+ ..+..+++|++|++++|.++...+..|.++++|+.|++++|.+.+..+..+..+. |
T Consensus 507 ~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 586 (680)
T 1ziw_A 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586 (680)
T ss_dssp CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCC
Confidence 999999999985422 2378899999999999999976667799999999999999999976666677777 9
Q ss_pred CeeeCcCCcccccCCCC-C-ccCCCCccccccCCCCccc
Q 037951 564 EYLNLSFNDFEGRLPTR-G-IFANASAISVGGCNRLCGG 600 (627)
Q Consensus 564 ~~L~ls~n~l~~~~p~~-~-~~~~l~~l~~~~n~~l~~~ 600 (627)
+.|++++|++++..|.. + .+++++.+++.+||+.|++
T Consensus 587 ~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp CEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred CEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 99999999999876643 2 5789999999999999976
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.8e-56 Score=485.87 Aligned_cols=510 Identities=19% Similarity=0.157 Sum_probs=349.2
Q ss_pred cceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccC
Q 037951 51 GITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGN 130 (627)
Q Consensus 51 ~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~ 130 (627)
....++++.+++. +|..+. +++++|++++|.+++..|.+|.++++|++|++++|.+.+..|..|+++++|++|++++
T Consensus 14 ~~~~~c~~~~l~~-iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 90 (606)
T 3t6q_A 14 NKTYNCENLGLNE-IPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTA 90 (606)
T ss_dssp TTEEECTTSCCSS-CCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCCccc-CcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCC
Confidence 3345667777664 355554 3799999999999988889999999999999999999988899999999999999999
Q ss_pred ccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCC
Q 037951 131 NKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIP 210 (627)
Q Consensus 131 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 210 (627)
|++++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+.....+..+++|++|++++|.+++..+
T Consensus 91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 99998889999999999999999999997768889999999999999999997554556669999999999999998878
Q ss_pred ccccCCCCCc--EEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCC----------------------
Q 037951 211 PSIYNLSFLV--IFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNAS---------------------- 266 (627)
Q Consensus 211 ~~l~~l~~L~--~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~---------------------- 266 (627)
..++.+++|+ .+++++|.+.+..|..+. ..+++.++++++... +..+..+.
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~~~~~---~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~ 245 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFD--SAVFQSLNFGGTQNL---LVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCCEECTTTTT--TCEEEEEECTTCSCH---HHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred hhhhhhcccceeEEecCCCccCccChhHhh--hccccccccCCchhH---HHHhhhccccchhheechhhccccccccCh
Confidence 8899999999 899999999977766654 467888888877521 11111111
Q ss_pred ---------CCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccc
Q 037951 267 ---------KLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALP 337 (627)
Q Consensus 267 ---------~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 337 (627)
+++.+++++|.+.+..+..|+.+++|++|++++|.++. ++..+..+++|++|++++|.+.+..|
T Consensus 246 ~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------lp~~l~~l~~L~~L~l~~n~l~~~~~ 318 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE-------LPSGLVGLSTLKKLVLSANKFENLCQ 318 (606)
T ss_dssp GGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC-------CCSSCCSCTTCCEEECTTCCCSBGGG
T ss_pred hHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC-------CChhhcccccCCEEECccCCcCcCch
Confidence 45666666666655555556666666666666665553 22345555666666666666665555
Q ss_pred hhHHhccccccEEEeecccccccCcc-cccCCCCCCEEeCCCCcccccc--chhhcCCCCCcEeeccCCcccccCChhhh
Q 037951 338 HSIANLSSQLQILVLGTNQLYGSIPS-GIGNLVNLYSLQTEENQFTGSI--PKEMGKLLNLQGLDFGGNHFSGEIPSTLG 414 (627)
Q Consensus 338 ~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 414 (627)
..+..++ +|++|++++|.+.+.++. .+..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+.+..+..+.
T Consensus 319 ~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 397 (606)
T 3t6q_A 319 ISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397 (606)
T ss_dssp GCGGGCT-TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT
T ss_pred hhhhccC-cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc
Confidence 5555554 566666666655543333 3555666666666666665443 44555666666666666666655555566
Q ss_pred CCCCCCEEEccCCccccccCh-hhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccC---CCccccCCC
Q 037951 415 NLSSLYEIFLGDNNLSGVIPS-SLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGS---IPPRIGNLK 490 (627)
Q Consensus 415 ~~~~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~---~~~~l~~l~ 490 (627)
.+++|++|++++|.+++..+. .+..+++|+.|++++|.+.+..|..+..++++ ++|++++|++.+. .+..+..++
T Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~l~ 476 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL-QHLNLQGNHFPKGNIQKTNSLQTLG 476 (606)
T ss_dssp TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC-CEEECTTCBCGGGEECSSCGGGGCT
T ss_pred CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC-CEEECCCCCCCccccccchhhccCC
Confidence 666666666666665544332 25556666666666666655555555555555 5666666665541 223455566
Q ss_pred CCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCc
Q 037951 491 ALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLS 569 (627)
Q Consensus 491 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls 569 (627)
+|++|++++|++++..|..+..+++|++|++++|++++..|+.+..++.| .|++++|.+++..|..+..++ |++|+++
T Consensus 477 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 555 (606)
T 3t6q_A 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLR 555 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECT
T ss_pred CccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCC
Confidence 66666666666665555566666666666666666666666666666666 666666666655555555554 6666666
Q ss_pred CCcccccCC
Q 037951 570 FNDFEGRLP 578 (627)
Q Consensus 570 ~n~l~~~~p 578 (627)
+|++....+
T Consensus 556 ~N~~~c~c~ 564 (606)
T 3t6q_A 556 QNPLDCTCS 564 (606)
T ss_dssp TCCEECSGG
T ss_pred CCCccccCC
Confidence 666655443
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-54 Score=480.58 Aligned_cols=518 Identities=21% Similarity=0.221 Sum_probs=447.2
Q ss_pred eecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccc
Q 037951 54 CDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKL 133 (627)
Q Consensus 54 c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l 133 (627)
-+++++.+++..|..|.++++|++|++++|.+++..+.+|+++++|++|++++|++++..|..|+++++|++|++++|.+
T Consensus 54 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 133 (680)
T 1ziw_A 54 LDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133 (680)
T ss_dssp EECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC
T ss_pred EECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcc
Confidence 38899999999999999999999999999999966566899999999999999999977778899999999999999999
Q ss_pred cccCCccccCCCCCCeeeCCCCCCCCCCCCCCC--CCCCCCEEECCCCCCCCCCCCccCCC-------------------
Q 037951 134 VGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLG--NLTSLEVVSLAGNPFGGNIPDSLGQL------------------- 192 (627)
Q Consensus 134 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~n~~~~~~~~~l~~l------------------- 192 (627)
++..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+.+..+..+..+
T Consensus 134 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~ 213 (680)
T 1ziw_A 134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213 (680)
T ss_dssp SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHH
T ss_pred cccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHH
Confidence 988888999999999999999999876665543 56899999999999998777766544
Q ss_pred --------CCccEEEeeCccccccCCccccCCCC--CcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccc
Q 037951 193 --------KELKTLGIGGNNLSGSIPPSIYNLSF--LVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISL 262 (627)
Q Consensus 193 --------~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 262 (627)
++|+.|++++|.+.+..+.++..++. |+.|++++|.+.+..|..+.. +++|++|++++|.+.+..+..+
T Consensus 214 ~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~ 292 (680)
T 1ziw_A 214 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSL 292 (680)
T ss_dssp HHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSCCBSEECTTTT
T ss_pred HHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccC-cccccEeeCCCCccCccChhhh
Confidence 56788888888888888888888755 999999999999777766654 9999999999999999999999
Q ss_pred cCCCCCcEeecccccccc-----cCc----cCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccc
Q 037951 263 SNASKLEYVEIASNSFFG-----KLS----VNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFR 333 (627)
Q Consensus 263 ~~~~~L~~L~l~~~~~~~-----~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 333 (627)
..+++|+.++++++...+ .+| ..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.
T Consensus 293 ~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~Ls~n~~~ 366 (680)
T 1ziw_A 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK------SNMFTGLINLKYLSLSNSFTS 366 (680)
T ss_dssp TTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC------TTTTTTCTTCCEEECTTCBSC
T ss_pred cCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC------hhHhccccCCcEEECCCCchh
Confidence 999999999999875432 122 36888999999999999998844 346788999999999999754
Q ss_pred cc--cchhHHhcc-ccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccc-hhhcCCCCCcEeeccCCcccccC
Q 037951 334 GA--LPHSIANLS-SQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIP-KEMGKLLNLQGLDFGGNHFSGEI 409 (627)
Q Consensus 334 ~~--~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~ 409 (627)
.. ....+.... ++|+.|++++|++++..+..+..+++|+.|++++|.+++.++ ..+.++++|+.|++++|++.+..
T Consensus 367 ~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 446 (680)
T 1ziw_A 367 LRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446 (680)
T ss_dssp CCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECC
T ss_pred hhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeC
Confidence 22 222233221 379999999999999889999999999999999999987665 68899999999999999999888
Q ss_pred ChhhhCCCCCCEEEccCCccc--cccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCC----
Q 037951 410 PSTLGNLSSLYEIFLGDNNLS--GVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIP---- 483 (627)
Q Consensus 410 ~~~~~~~~~L~~L~l~~n~~~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~---- 483 (627)
+..|..+++|++|++++|.+. +..|..+..+++|+.|++++|.+.+..+..+..+..+ ++|++++|++.+..+
T Consensus 447 ~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~ 525 (680)
T 1ziw_A 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-EILDLQHNNLARLWKHANP 525 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCGGGGSTTST
T ss_pred hhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc-CEEeCCCCCccccchhhcc
Confidence 889999999999999999986 5678889999999999999999996666678888888 999999999986422
Q ss_pred ----ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcc
Q 037951 484 ----PRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLE 559 (627)
Q Consensus 484 ----~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~ 559 (627)
..+.++++|++|++++|+++...+..|..+++|+.|++++|.+++..+..|..+++|+.|++++|.+++..|..+.
T Consensus 526 ~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 526 GGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp TSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred CCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 2378899999999999999944345699999999999999999988888889999999999999999988887776
Q ss_pred -cCc-CCeeeCcCCcccccCCC
Q 037951 560 -ALS-LEYLNLSFNDFEGRLPT 579 (627)
Q Consensus 560 -~~~-L~~L~ls~n~l~~~~p~ 579 (627)
.++ |+.+++++|++...-+.
T Consensus 606 ~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 606 PAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp HHHTTCSEEECTTCCCCBCCCC
T ss_pred ccccccCEEEccCCCcccCCcc
Confidence 555 99999999999887653
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1e-54 Score=474.51 Aligned_cols=510 Identities=21% Similarity=0.197 Sum_probs=446.3
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCC
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMN 155 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 155 (627)
+.++.++..++ .+|..+. .++++|++++|.+++..|..|+++++|++|++++|++.+..|.+|.++++|++|++++|
T Consensus 15 ~~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred ceEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC
Confidence 46888888887 6787775 48999999999999888999999999999999999999888999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCCh
Q 037951 156 NLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPP 235 (627)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 235 (627)
.+.+..|..++++++|++|++++|.+++..+..+..+++|++|++++|.+.+.....+..+++|+.|++++|.+.+..+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 99988899999999999999999999977678899999999999999999974445555699999999999999976666
Q ss_pred hhhhcCCCCc--eeccCCccccccCCccccCCCCCcEeeccccccc--------------------------ccCccCcC
Q 037951 236 SLGLYFPNLK--LFQTNENFFSGSIPISLSNASKLEYVEIASNSFF--------------------------GKLSVNFG 287 (627)
Q Consensus 236 ~~~~~~~~L~--~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--------------------------~~~~~~l~ 287 (627)
.+.. +++++ .+++++|.+.+..+..+. ..+|+.+++++|... ...+..+.
T Consensus 172 ~~~~-l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~ 249 (606)
T 3t6q_A 172 DMSS-LQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE 249 (606)
T ss_dssp HHHT-TTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGG
T ss_pred hhhh-hcccceeEEecCCCccCccChhHhh-hccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhc
Confidence 6655 89999 899999999987777654 468999999887511 00111122
Q ss_pred CCC--CcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccc
Q 037951 288 GMK--NLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGI 365 (627)
Q Consensus 288 ~l~--~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 365 (627)
++. +|+.+++++|.++.+.. ..+..+++|++|++++|.++ .+|..+..+. +|++|++++|.+.+..+..+
T Consensus 250 ~l~~~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~ 321 (606)
T 3t6q_A 250 GLCEMSVESINLQKHYFFNISS------NTFHCFSGLQELDLTATHLS-ELPSGLVGLS-TLKKLVLSANKFENLCQISA 321 (606)
T ss_dssp GGGGSEEEEEECTTCCCSSCCT------TTTTTCTTCSEEECTTSCCS-CCCSSCCSCT-TCCEEECTTCCCSBGGGGCG
T ss_pred hhhcCceeEEEeecCccCccCH------HHhccccCCCEEeccCCccC-CCChhhcccc-cCCEEECccCCcCcCchhhh
Confidence 222 78999999999987543 36788999999999999998 7788887776 89999999999998888899
Q ss_pred cCCCCCCEEeCCCCccccccc-hhhcCCCCCcEeeccCCcccccC--ChhhhCCCCCCEEEccCCccccccChhhcCCCC
Q 037951 366 GNLVNLYSLQTEENQFTGSIP-KEMGKLLNLQGLDFGGNHFSGEI--PSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLER 442 (627)
Q Consensus 366 ~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~ 442 (627)
..+++|+.|++++|.+.+.++ ..+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence 999999999999999886555 45889999999999999998665 778899999999999999999888999999999
Q ss_pred CCEEECcCCcCcccCCcc-ccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc---CCccccCCCCCCE
Q 037951 443 LAILEMFANELSGTIPGD-IFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE---IPSELGLCSSLEE 518 (627)
Q Consensus 443 L~~L~l~~n~l~~~~~~~-~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~l~~L~~ 518 (627)
|+.|++++|.+.+..+.. +..++.+ ++|++++|.+.+..+..+..+++|++|++++|++++. .+..+..+++|++
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~ 480 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLL-KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTC-CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred CCeEECCCCcCCCcccchhhhCcccC-CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence 999999999998776654 7788888 9999999999988899999999999999999999863 3356899999999
Q ss_pred EECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCC-CccCCCCccccccCCC
Q 037951 519 IYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTR-GIFANASAISVGGCNR 596 (627)
Q Consensus 519 L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~-~~~~~l~~l~~~~n~~ 596 (627)
|++++|.+++..|..|..+++|+.|++++|++.+..|..+..+. | +|++++|++++..|.. ..+++++.+++.+||+
T Consensus 481 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred EECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCc
Confidence 99999999999999999999999999999999999999999888 9 9999999999877753 5678999999999999
Q ss_pred Cccc
Q 037951 597 LCGG 600 (627)
Q Consensus 597 l~~~ 600 (627)
.|.+
T Consensus 560 ~c~c 563 (606)
T 3t6q_A 560 DCTC 563 (606)
T ss_dssp ECSG
T ss_pred cccC
Confidence 8854
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3e-54 Score=470.90 Aligned_cols=531 Identities=19% Similarity=0.167 Sum_probs=330.6
Q ss_pred CCCc--ccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCC
Q 037951 46 FCEW--EGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRL 123 (627)
Q Consensus 46 ~c~~--~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 123 (627)
.|.+ .+...++++++++.. |..+. +++++|++++|.+++..+.+|.++++|++|++++|.+++..|..|+++++|
T Consensus 6 ~c~~~~~~~~~~c~~~~l~~i-p~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L 82 (606)
T 3vq2_A 6 PCIEVVPNITYQCMDQKLSKV-PDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHL 82 (606)
T ss_dssp CCEEEETTTEEECTTSCCSSC-CTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CceecCCCCceEccCCCcccC-CCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhc
Confidence 3544 355567788887754 44443 789999999999988778889999999999999999998888889999999
Q ss_pred CEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCccCCCCCccEEEeeC
Q 037951 124 TVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGG-NIPDSLGQLKELKTLGIGG 202 (627)
Q Consensus 124 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~ 202 (627)
++|++++|.+++..|..|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++
T Consensus 83 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 83 SNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY 162 (606)
T ss_dssp CEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred CEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence 999999999998778999999999999999999987777889999999999999999885 4688899999999999999
Q ss_pred ccccccCCccccCCCCCc----EEEeecccCccCCChhhhhcCCCCceeccCCcccc-ccCCccccCCCCCcEeeccccc
Q 037951 203 NNLSGSIPPSIYNLSFLV----IFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFS-GSIPISLSNASKLEYVEIASNS 277 (627)
Q Consensus 203 n~~~~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~ 277 (627)
|.+++..+..++.+++|+ .+++++|.+.+..+..+ . ..+|++|++++|.+. +..+..+.+++.++.+++..+.
T Consensus 163 n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~-~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~ 240 (606)
T 3vq2_A 163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF-Q-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGE 240 (606)
T ss_dssp SCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTT-T-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CcceecChhhhhhhhccccccceeeccCCCcceeCcccc-c-CceeeeeeccCCccchhHHHHHhccccccccccccccc
Confidence 999887777777666554 79999999885444443 3 338999999999876 3566667778887777764333
Q ss_pred cccc------CccCcCCCC--CcCEEec-cCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhcccccc
Q 037951 278 FFGK------LSVNFGGMK--NLSYLIL-EYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQ 348 (627)
Q Consensus 278 ~~~~------~~~~l~~l~--~L~~L~l-~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 348 (627)
+... .+..+.++. .++.+++ ..+.+.+ ..+. +..+++|+.|++++|.+. .+| .+.... +|+
T Consensus 241 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~------~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~-~L~ 310 (606)
T 3vq2_A 241 FKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSD------DIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHF-KWQ 310 (606)
T ss_dssp CTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCG------GGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTC-CCS
T ss_pred cccCCcccccChHHhhhhhhccHhheeccccccccc------cccc-cccCCCCCEEEecCccch-hhh-hccccc-cCC
Confidence 2211 001111111 2233333 2222222 1111 444555555555555554 233 333333 455
Q ss_pred EEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCccccc--CChhhhCCCCCCEEEccC
Q 037951 349 ILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGE--IPSTLGNLSSLYEIFLGD 426 (627)
Q Consensus 349 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~~~~L~~L~l~~ 426 (627)
+|++++|.+ +.+| .+ .+++|+.|++++|...+.. .+..+++|+.|++++|.+.+. .+..+..+++|++|++++
T Consensus 311 ~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~ 385 (606)
T 3vq2_A 311 SLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385 (606)
T ss_dssp EEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCS
T ss_pred EEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCC
Confidence 555555555 3444 23 5555555555555333222 344555555555555555433 244555555555555555
Q ss_pred CccccccChhhcCCCCCCEEECcCCcCcccCC-ccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccc-
Q 037951 427 NNLSGVIPSSLGNLERLAILEMFANELSGTIP-GDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSG- 504 (627)
Q Consensus 427 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~- 504 (627)
|.+++ .|..+..+++|+.|++++|.+.+..| ..+..++++ ++|++++|.+.+..|..+.++++|++|++++|.+++
T Consensus 386 n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 463 (606)
T 3vq2_A 386 NGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL-LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN 463 (606)
T ss_dssp CSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred Ccccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccC-CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc
Confidence 55542 33445555555555555555554444 344445555 555555555555555555555555555555555554
Q ss_pred cCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCC-Cc
Q 037951 505 EIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTR-GI 582 (627)
Q Consensus 505 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~-~~ 582 (627)
.+|..++.+++|++|++++|.+++..|..+..+++|++|++++|++.+..|..+..++ |++|++++|+++ .+|.. ..
T Consensus 464 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~ 542 (606)
T 3vq2_A 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQH 542 (606)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGG
T ss_pred chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhh
Confidence 2455555555555555555555555555555555555555555555555555555544 555555555554 23321 22
Q ss_pred c-CCCCccccccCCCCcc
Q 037951 583 F-ANASAISVGGCNRLCG 599 (627)
Q Consensus 583 ~-~~l~~l~~~~n~~l~~ 599 (627)
+ .+++.+++.+||+.|+
T Consensus 543 l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 543 FPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp SCTTCCEEECCSCCCCCS
T ss_pred hcccCcEEEccCCCcccC
Confidence 2 2355555555555553
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-53 Score=464.75 Aligned_cols=506 Identities=19% Similarity=0.149 Sum_probs=434.7
Q ss_pred CCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCC
Q 037951 74 FLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALP 153 (627)
Q Consensus 74 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~ 153 (627)
.-++++.++++++ .+|..+. +++++|++++|.+++..+..|+++++|++|++++|.+++..|.+|.++++|++|+++
T Consensus 12 ~~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 12 PNITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 3468999999998 6777665 899999999999998888899999999999999999998889999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccc-cCCccccCCCCCcEEEeecccCccC
Q 037951 154 MNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSG-SIPPSIYNLSFLVIFSVSENQMHGS 232 (627)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~ 232 (627)
+|.+++..|..|+++++|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|+.|++++|.+.+.
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 999998889999999999999999999998777889999999999999999986 5799999999999999999999987
Q ss_pred CChhhhhcCCC----CceeccCCccccccCCccccCCCCCcEeeccccccc-ccCccCcCCCCCcCEEeccCccCCCCCC
Q 037951 233 LPPSLGLYFPN----LKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFF-GKLSVNFGGMKNLSYLILEYNNLGSGES 307 (627)
Q Consensus 233 ~~~~~~~~~~~----L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 307 (627)
.+..+.. +.+ +.++++++|.+++..+..+... +|+.+++++|.+. +..+..++.++.++.+++..+.+.....
T Consensus 169 ~~~~~~~-l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 169 TVNDLQF-LRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp CTTTTHH-HHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred Chhhhhh-hhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 7765544 444 4589999999987666665554 8999999999886 4556678889999999887665543221
Q ss_pred CC---ccccccCCCCCcccEEEc-cCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCcccc
Q 037951 308 DE---MGFMNSLANCSKLQVLSL-GGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTG 383 (627)
Q Consensus 308 ~~---~~~~~~l~~~~~L~~L~l-~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 383 (627)
-. ...+..+..+ .++.+++ ..+.+.+..|. +..+. +|+.|++++|.+. .++ .+..+++|+.|++++|.+ +
T Consensus 247 l~~~~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~l~-~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~ 320 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHCLA-NVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-K 320 (606)
T ss_dssp CSCCCGGGGTTGGGS-EEEEEEECCCTTCCGGGGS-CGGGT-TCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-S
T ss_pred ccccChHHhhhhhhc-cHhheeccccccccccccc-cccCC-CCCEEEecCccch-hhh-hccccccCCEEEcccccC-c
Confidence 11 1122223333 5777788 66778877776 66665 8999999999997 455 788999999999999999 4
Q ss_pred ccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccc--cChhhcCCCCCCEEECcCCcCcccCCccc
Q 037951 384 SIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGV--IPSSLGNLERLAILEMFANELSGTIPGDI 461 (627)
Q Consensus 384 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 461 (627)
.+| .+ .+++|+.|++++|...+.. .+..+++|++|++++|.+++. .+..+..+++|+.|++++|.+. .+|..+
T Consensus 321 ~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~ 395 (606)
T 3vq2_A 321 QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANF 395 (606)
T ss_dssp SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCC
T ss_pred ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhc
Confidence 777 45 8999999999999765444 567899999999999999866 3788999999999999999988 577888
Q ss_pred cccccCccEEEccCCccccCCC-ccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccc-cCChhccCCCC
Q 037951 462 FNISSLSVSLDLAENHFVGSIP-PRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNG-FIPSFFRTSRG 539 (627)
Q Consensus 462 ~~~~~ll~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~-~~~~~l~~l~~ 539 (627)
..++++ ++|++++|.+.+..+ ..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++
T Consensus 396 ~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 396 MGLEEL-QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 474 (606)
T ss_dssp TTCTTC-CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred cCCCCC-CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence 889999 999999999998877 678999999999999999998899999999999999999999998 47889999999
Q ss_pred CCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCC-CCccCCCCccccccCCC
Q 037951 540 IRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPT-RGIFANASAISVGGCNR 596 (627)
Q Consensus 540 L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~-~~~~~~l~~l~~~~n~~ 596 (627)
|++|++++|.+.+..|..+..++ |++|++++|++.+..|. ...+++|+.+++.+|..
T Consensus 475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCC
T ss_pred CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcC
Confidence 99999999999998898888888 99999999999998774 45678999999999963
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4e-53 Score=476.86 Aligned_cols=529 Identities=22% Similarity=0.226 Sum_probs=448.7
Q ss_pred CCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccC-CccccCCCCCCE
Q 037951 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKI-PANLSYCSRLTV 125 (627)
Q Consensus 47 c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~ 125 (627)
|.-.|..+|+++++++.+. . ..+++++|||++|.+++..+.+|.++++|++|+|++|...+.+ |.+|+++++|++
T Consensus 2 C~~~~~~~dcs~~~L~~vP-~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~ 77 (844)
T 3j0a_A 2 CSFDGRIAFYRFCNLTQVP-Q---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRI 77 (844)
T ss_dssp CBTTTEEEEESCCCSSCCC-S---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCE
T ss_pred ceEeceEEEccCCCCCCCC-C---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCE
Confidence 6677778899999998764 3 4579999999999999888999999999999999999655444 788999999999
Q ss_pred EEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCC-CccCCCCCccEEEeeC
Q 037951 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPF--LGNLTSLEVVSLAGNPFGGNIP-DSLGQLKELKTLGIGG 202 (627)
Q Consensus 126 L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~ 202 (627)
|++++|.+.+..|..|.++++|++|++++|.+.+..+.. +.++++|++|++++|.+.+..+ ..+.++++|++|++++
T Consensus 78 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~ 157 (844)
T 3j0a_A 78 LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157 (844)
T ss_dssp EECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEES
T ss_pred EECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCC
Confidence 999999999888999999999999999999999866655 9999999999999999987654 5799999999999999
Q ss_pred ccccccCCccccCC--CCCcEEEeecccCccCCChhhhhcCC------CCceeccCCccccccCCccccCC---CCCcEe
Q 037951 203 NNLSGSIPPSIYNL--SFLVIFSVSENQMHGSLPPSLGLYFP------NLKLFQTNENFFSGSIPISLSNA---SKLEYV 271 (627)
Q Consensus 203 n~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~------~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L 271 (627)
|.+++..+..+..+ ++|+.|++++|.+.+..|..+.. ++ .|+.|++++|.+++..+..+... ++++.+
T Consensus 158 N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L 236 (844)
T 3j0a_A 158 NQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSL 236 (844)
T ss_dssp SCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEE
T ss_pred CcCCeeCHHHcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccce
Confidence 99998888888877 89999999999999877766543 33 49999999999888777766543 567788
Q ss_pred eccccc---------ccccCccCcCCC--CCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhH
Q 037951 272 EIASNS---------FFGKLSVNFGGM--KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSI 340 (627)
Q Consensus 272 ~l~~~~---------~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~ 340 (627)
.++.+. +.+.....|.++ ++|+.|++++|.+.... +..+..+++|+.|++++|++.+..+..+
T Consensus 237 ~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 310 (844)
T 3j0a_A 237 ILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLN------SRVFETLKDLKVLNLAYNKINKIADEAF 310 (844)
T ss_dssp ECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEEC------SCCSSSCCCCCEEEEESCCCCEECTTTT
T ss_pred ecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccC------hhhhhcCCCCCEEECCCCcCCCCChHHh
Confidence 776332 222333345544 78999999999988743 4568889999999999999998888888
Q ss_pred HhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCC
Q 037951 341 ANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLY 420 (627)
Q Consensus 341 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 420 (627)
..+. +|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++. ..+++|+
T Consensus 311 ~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~ 384 (844)
T 3j0a_A 311 YGLD-NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIP 384 (844)
T ss_dssp TTCS-SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCS
T ss_pred cCCC-CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcc
Confidence 8887 899999999999988899999999999999999999987788899999999999999999842 2378999
Q ss_pred EEEccCCccccccChhhcCCCCCCEEECcCCcCcccCC-ccccccccCccEEEccCCccccCCCc-cccCCCCCCEEEcc
Q 037951 421 EIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIP-GDIFNISSLSVSLDLAENHFVGSIPP-RIGNLKALRCFDVS 498 (627)
Q Consensus 421 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~ll~~L~l~~n~l~~~~~~-~l~~l~~L~~L~Ls 498 (627)
.|++++|+++ .+|.. ..+++.|++++|.+.+.-. ..+..++.+ ++|++++|++.+..+. .+..+++|++|+++
T Consensus 385 ~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls 459 (844)
T 3j0a_A 385 DIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHL-QILILNQNRFSSCSGDQTPSENPSLEQLFLG 459 (844)
T ss_dssp EEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTC-CEEEEESCCCCCCCSSSSSCSCTTCCBCEEE
T ss_pred hhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCcc-ceeeCCCCcccccccccccccCCccccccCC
Confidence 9999999998 44543 5679999999999984321 234577888 9999999999865443 35678999999999
Q ss_pred CCccc-----ccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCcCCeeeCcCCcc
Q 037951 499 NNDLS-----GEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDF 573 (627)
Q Consensus 499 ~n~l~-----~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~ls~n~l 573 (627)
+|.++ +..+..|..+++|+.|+|++|.+++..|..|..+++|+.|++++|.+++..|..+. ..|+.|++++|++
T Consensus 460 ~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQL 538 (844)
T ss_dssp SCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECC
T ss_pred CCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcC
Confidence 99986 34456788999999999999999999999999999999999999999976665555 4499999999999
Q ss_pred cccCCCCCccCCCCccccccCCCCccc
Q 037951 574 EGRLPTRGIFANASAISVGGCNRLCGG 600 (627)
Q Consensus 574 ~~~~p~~~~~~~l~~l~~~~n~~l~~~ 600 (627)
++..|.. +.+++.+++.+||+.|++
T Consensus 539 ~~~~~~~--~~~L~~l~l~~Np~~C~c 563 (844)
T 3j0a_A 539 LAPNPDV--FVSLSVLDITHNKFICEC 563 (844)
T ss_dssp CCCCSCC--CSSCCEEEEEEECCCCSS
T ss_pred CCCChhH--hCCcCEEEecCCCccccc
Confidence 9988854 678999999999999954
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.8e-53 Score=458.13 Aligned_cols=498 Identities=18% Similarity=0.233 Sum_probs=283.7
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCC-------CCCCCCCCCCc---ccceeecCCCCcceecccccCCCCCCCEEECCC
Q 037951 13 AFEEGDLAALQAFKSMISHDPQGILN-------SWNDSRHFCEW---EGITCDLRSKALSGLLSPQIGNLSFLREINLMN 82 (627)
Q Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~~~~~-------~w~~~~~~c~~---~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~ 82 (627)
+....|++||.+++.++.+++|.... +|....++|.| .||+|+-. .+++.|+|++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~---------------~~V~~L~L~~ 90 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN---------------GRVTGLSLEG 90 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT---------------CCEEEEECTT
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC---------------CCEEEEEecC
Confidence 33456999999999999877775433 89988999999 99999532 3788999999
Q ss_pred CCCcccCCcccCCCCCCCEEeCCCCcCc------c------cCCccccCCCCCCEEEccCccccccCCccccC-CCCCCe
Q 037951 83 NTIQGEIPLEFGRLRRLETLLLSDNSLV------G------KIPANLSYCSRLTVLVLGNNKLVGSIPFEFVS-LYKLKQ 149 (627)
Q Consensus 83 ~~~~~~~~~~~~~l~~L~~L~L~~n~i~------~------~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~-l~~L~~ 149 (627)
+.+.|.+|.+|+++++|++|+|++|.+. + .+|... +..|+ ++++++.+.+..+..+.. +..+..
T Consensus 91 ~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~ 167 (636)
T 4eco_A 91 FGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCIN 167 (636)
T ss_dssp SCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHH
T ss_pred cccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhh
Confidence 9999999999999999999999999762 1 233322 44566 777777766665555442 111222
Q ss_pred eeCCCCCCCCCCCCCCCCCCCCCEEECC--CCCCCCCCCCccCCCCCccEEEeeCcccccc-----------------CC
Q 037951 150 LALPMNNLTGGIPPFLGNLTSLEVVSLA--GNPFGGNIPDSLGQLKELKTLGIGGNNLSGS-----------------IP 210 (627)
Q Consensus 150 L~l~~n~l~~~~~~~l~~l~~L~~L~L~--~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-----------------~~ 210 (627)
+++....+.. .....++.+.+. .|.+++ +|..++++++|++|++++|.+++. +|
T Consensus 168 ~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 168 SDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred cCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 2222111110 001111111111 233333 344444444444444444444432 44
Q ss_pred cccc--CCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCcc-ccc-cCCccccCC------CCCcEeecccccccc
Q 037951 211 PSIY--NLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENF-FSG-SIPISLSNA------SKLEYVEIASNSFFG 280 (627)
Q Consensus 211 ~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~------~~L~~L~l~~~~~~~ 280 (627)
..++ ++++|+.|++++|.+.+.+|..+.. +++|++|++++|. +++ .+|..+..+ ++|++|++++|.+.
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTT-CSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhc-CCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 4444 4444444444444444444433322 3333333333333 333 333333322 44555555555444
Q ss_pred cCcc--CcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeeccccc
Q 037951 281 KLSV--NFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLY 358 (627)
Q Consensus 281 ~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 358 (627)
.+|. .++.+++|++|++++|.++ +.+| .+..+. +|++|++++|.++
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~------------------------------g~ip-~~~~l~-~L~~L~L~~N~l~ 366 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLE------------------------------GKLP-AFGSEI-KLASLNLAYNQIT 366 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCE------------------------------EECC-CCEEEE-EESEEECCSSEEE
T ss_pred ccCchhhhccCCCCCEEeCcCCcCc------------------------------cchh-hhCCCC-CCCEEECCCCccc
Confidence 3333 3444444444444444443 3333 233322 3444444444444
Q ss_pred ccCcccccCCCC-CCEEeCCCCccccccchhhcCCC--CCcEeeccCCcccccCChhhh-------CCCCCCEEEccCCc
Q 037951 359 GSIPSGIGNLVN-LYSLQTEENQFTGSIPKEMGKLL--NLQGLDFGGNHFSGEIPSTLG-------NLSSLYEIFLGDNN 428 (627)
Q Consensus 359 ~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~~~~-------~~~~L~~L~l~~n~ 428 (627)
.+|..+..+++ |+.|++++|.++ .+|..+..++ +|+.|++++|.+.+..|..+. .+++|++|++++|.
T Consensus 367 -~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~ 444 (636)
T 4eco_A 367 -EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ 444 (636)
T ss_dssp -ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC
T ss_pred -cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc
Confidence 33444444444 555555555544 3444443322 455555555555554444444 44555556666655
Q ss_pred cccccChhhcCCCCCCEEECcCCcCcccCCccccccc--------cCccEEEccCCccccCCCcccc--CCCCCCEEEcc
Q 037951 429 LSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNIS--------SLSVSLDLAENHFVGSIPPRIG--NLKALRCFDVS 498 (627)
Q Consensus 429 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~--------~ll~~L~l~~n~l~~~~~~~l~--~l~~L~~L~Ls 498 (627)
++...+..+..+++|+.|++++|.+. .+|....... .+ ++|++++|++. .+|..+. .+++|++|+++
T Consensus 445 l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L-~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls 521 (636)
T 4eco_A 445 ISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLL-TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLS 521 (636)
T ss_dssp CCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGC-CEEECCSSCCC-BCCGGGSTTTCTTCCEEECC
T ss_pred cCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCc-cEEECcCCcCC-ccChhhhhccCCCcCEEECC
Confidence 55332233444556666666666555 4554433322 55 67777777776 5666665 77888888888
Q ss_pred CCcccccCCccccCCCCCCEEEC------CCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCcCCeeeCcCCc
Q 037951 499 NNDLSGEIPSELGLCSSLEEIYL------AENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFND 572 (627)
Q Consensus 499 ~n~l~~~~~~~l~~l~~L~~L~L------~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~ls~n~ 572 (627)
+|++++ +|..+..+++|++|++ ++|.+.+.+|..+..+++|++|++++|.+ +.+|..+. ..|+.|++++|+
T Consensus 522 ~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~ 598 (636)
T 4eco_A 522 YNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNP 598 (636)
T ss_dssp SSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCT
T ss_pred CCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCC
Confidence 888875 7777777888888888 56777888888888888888888888888 57776654 348888888888
Q ss_pred ccccC
Q 037951 573 FEGRL 577 (627)
Q Consensus 573 l~~~~ 577 (627)
+...-
T Consensus 599 l~~~~ 603 (636)
T 4eco_A 599 NISID 603 (636)
T ss_dssp TCEEE
T ss_pred Ccccc
Confidence 76533
No 11
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2e-50 Score=435.37 Aligned_cols=492 Identities=17% Similarity=0.195 Sum_probs=380.2
Q ss_pred CCCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCE
Q 037951 46 FCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTV 125 (627)
Q Consensus 46 ~c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 125 (627)
.|.|.++ ||+++++++.+ |..+. ++|++|++++|.+++..|.+|.++++|++|++++|++++..|..|+++++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~i-p~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 78 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSI-PSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH 78 (549)
T ss_dssp EECTTSE-EECTTSCCSSC-CSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCce-EECCCCccccc-cccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCE
Confidence 5999998 99999999865 44443 79999999999999888899999999999999999999888899999999999
Q ss_pred EEccCccccccCCccccCCCCCCeeeCCCCCCCC-CCCCCCCCCCCCCEEECCCCC-CCCCCCCccCCCCCccEEEeeCc
Q 037951 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTG-GIPPFLGNLTSLEVVSLAGNP-FGGNIPDSLGQLKELKTLGIGGN 203 (627)
Q Consensus 126 L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n 203 (627)
|++++|++++..+..++++++|++|++++|.+++ ..|..++++++|++|++++|. +....+..+..+++|++|++++|
T Consensus 79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 9999999998777789999999999999999986 457789999999999999998 44444468999999999999999
Q ss_pred cccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccC--C-ccccCCCCCcEeecccccccc
Q 037951 204 NLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSI--P-ISLSNASKLEYVEIASNSFFG 280 (627)
Q Consensus 204 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~-~~l~~~~~L~~L~l~~~~~~~ 280 (627)
.+++..|..++.+++|+.|++++|.+. .+|..+...+++|++|++++|.+++.. + .....+++|+.+++++|.+.+
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred cccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 999999999999999999999999875 566666666899999999999988742 1 223457889999999998765
Q ss_pred cCc----cCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccc-----cchhHHhccccccEEE
Q 037951 281 KLS----VNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGA-----LPHSIANLSSQLQILV 351 (627)
Q Consensus 281 ~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-----~~~~~~~~~~~L~~L~ 351 (627)
..+ ..+..+++|+.+++++|.+.+...-.......+..+.+++.|++.++.+... .+..+. ...+++.|+
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~-~~~~L~~L~ 316 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS-LLEKVKRIT 316 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH-HSTTCCEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh-hcccceEEE
Confidence 433 3346778999999999987664332212233456778889999988876532 122222 223788888
Q ss_pred eecccccccCcccc-cCCCCCCEEeCCCCccccccch---hhcCCCCCcEeeccCCcccccCC--hhhhCCCCCCEEEcc
Q 037951 352 LGTNQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPK---EMGKLLNLQGLDFGGNHFSGEIP--STLGNLSSLYEIFLG 425 (627)
Q Consensus 352 l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~~~L~~L~l~ 425 (627)
+++|.+. .+|..+ ..+++|+.|++++|++++..|. .++.+++|+.|++++|++++..+ ..+..+++|++|+++
T Consensus 317 l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls 395 (549)
T 2z81_A 317 VENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395 (549)
T ss_dssp EESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECT
T ss_pred eccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECC
Confidence 8888876 455554 5688888888888888765543 36677888888888888874432 347778888888888
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc
Q 037951 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE 505 (627)
Q Consensus 426 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 505 (627)
+|+++ .+|..+..+++|++|++++|.+. .+|..+. ..+ ++|++++|++.+.. ..+++|++|++++|+++ .
T Consensus 396 ~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L-~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ 465 (549)
T 2z81_A 396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIP--QTL-EVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-T 465 (549)
T ss_dssp TCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSC--TTC-SEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-S
T ss_pred CCCCc-cCChhhcccccccEEECCCCCcc-cccchhc--CCc-eEEECCCCChhhhc----ccCChhcEEECCCCccC-c
Confidence 88887 56777777788888888888776 4443332 344 67777777776532 45677777777777776 5
Q ss_pred CCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccc
Q 037951 506 IPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP 555 (627)
Q Consensus 506 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 555 (627)
+|. ...+++|++|++++|++++..|..+..+++|+.|++++|++.+..|
T Consensus 466 ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 466 LPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 554 4566777777777777777666667777777777777777766555
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-50 Score=451.56 Aligned_cols=504 Identities=20% Similarity=0.175 Sum_probs=429.3
Q ss_pred eecCCCCcceecccccCCCCCCCEEECCCCCCcccC-CcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcc
Q 037951 54 CDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEI-PLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNK 132 (627)
Q Consensus 54 c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~ 132 (627)
-|+++|.+++..+..|.++++|++|++++|...+.+ |.+|.++++|++|+|++|.+.+..|..|+++++|++|++++|.
T Consensus 29 LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 108 (844)
T 3j0a_A 29 LLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG 108 (844)
T ss_dssp EEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC
T ss_pred EECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC
Confidence 389999999999999999999999999999655555 8889999999999999999998889999999999999999999
Q ss_pred ccccCCcc--ccCCCCCCeeeCCCCCCCCCCC-CCCCCCCCCCEEECCCCCCCCCCCCccCCC--CCccEEEeeCccccc
Q 037951 133 LVGSIPFE--FVSLYKLKQLALPMNNLTGGIP-PFLGNLTSLEVVSLAGNPFGGNIPDSLGQL--KELKTLGIGGNNLSG 207 (627)
Q Consensus 133 l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l--~~L~~L~l~~n~~~~ 207 (627)
+++..+.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+.+..+..+..+ ++|+.|+++.|.+.+
T Consensus 109 l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS 188 (844)
T ss_dssp CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCC
T ss_pred CCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccc
Confidence 98766655 9999999999999999987654 579999999999999999998888888887 899999999999998
Q ss_pred cCCccccCCCC------CcEEEeecccCccCCChhhhhcC--CCCceeccCCc---------cccccCCccccC--CCCC
Q 037951 208 SIPPSIYNLSF------LVIFSVSENQMHGSLPPSLGLYF--PNLKLFQTNEN---------FFSGSIPISLSN--ASKL 268 (627)
Q Consensus 208 ~~~~~l~~l~~------L~~L~l~~n~l~~~~~~~~~~~~--~~L~~L~l~~~---------~~~~~~~~~l~~--~~~L 268 (627)
..+..+..+++ |+.|++++|.+.+..+..+.... .++..+.+..+ .+.+.....+.. .++|
T Consensus 189 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L 268 (844)
T 3j0a_A 189 RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSV 268 (844)
T ss_dssp CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCC
T ss_pred ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCc
Confidence 88887777665 99999999999988887776533 45667776632 222223333444 3789
Q ss_pred cEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhcccccc
Q 037951 269 EYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQ 348 (627)
Q Consensus 269 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 348 (627)
+.|++++|.+.+..+..+..+++|+.|++++|.++... +..+..+++|++|++++|.+++..+..+..++ +|+
T Consensus 269 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~ 341 (844)
T 3j0a_A 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA------DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP-KVA 341 (844)
T ss_dssp CEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEEC------TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT-TCC
T ss_pred cEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCC------hHHhcCCCCCCEEECCCCCCCccCHHHhcCCC-CCC
Confidence 99999999999988999999999999999999998743 34678899999999999999988888888887 899
Q ss_pred EEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCc
Q 037951 349 ILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNN 428 (627)
Q Consensus 349 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 428 (627)
.|++++|.+.+..+..+..+++|+.|++++|.+++ +..+++|+.|++++|++. .+|.. ..+++.|++++|.
T Consensus 342 ~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-----i~~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~ 412 (844)
T 3j0a_A 342 YIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-----IHFIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENR 412 (844)
T ss_dssp EEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-----CSSCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCC
T ss_pred EEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-----ccCCCCcchhccCCCCcc-ccccc---ccccceeecccCc
Confidence 99999999998888889999999999999999884 233889999999999998 44543 5689999999999
Q ss_pred cccccC-hhhcCCCCCCEEECcCCcCcccCCc-cccccccCccEEEccCCcccc-----CCCccccCCCCCCEEEccCCc
Q 037951 429 LSGVIP-SSLGNLERLAILEMFANELSGTIPG-DIFNISSLSVSLDLAENHFVG-----SIPPRIGNLKALRCFDVSNND 501 (627)
Q Consensus 429 ~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~ll~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~Ls~n~ 501 (627)
+++... ..+..+++|+.|++++|.+.+..+. .+..++++ ++|++++|.+.+ ..+..|..+++|++|+|++|+
T Consensus 413 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L-~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 491 (844)
T 3j0a_A 413 LENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSL-EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNY 491 (844)
T ss_dssp CCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTC-CBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHH
T ss_pred cccCchhhhhhcCCccceeeCCCCcccccccccccccCCcc-ccccCCCCccccccccccchhhhcCcccccEEECCCCc
Confidence 986432 2356899999999999999854333 24456677 899999999873 445668889999999999999
Q ss_pred ccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCcCCeeeCcCCcccccCC
Q 037951 502 LSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDFEGRLP 578 (627)
Q Consensus 502 l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~ls~n~l~~~~p 578 (627)
+++..|..|..+++|+.|+|++|++++..+..+. ++|+.|++++|.+.+..|..+. .|+.+++++|++....+
T Consensus 492 l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~--~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 492 LNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV--SLSVLDITHNKFICECE 564 (844)
T ss_dssp HTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS--SCCEEEEEEECCCCSSS
T ss_pred ccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC--CcCEEEecCCCcccccc
Confidence 9988888899999999999999999988777666 8999999999999998886653 48899999999987665
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=3.2e-50 Score=444.61 Aligned_cols=504 Identities=18% Similarity=0.234 Sum_probs=371.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCC-----CC--CCc------------ccceeecCCCCcceecccccCCC
Q 037951 12 AAFEEGDLAALQAFKSMISHDPQGILNSWNDSR-----HF--CEW------------EGITCDLRSKALSGLLSPQIGNL 72 (627)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~-----~~--c~~------------~~~~c~l~~~~l~~~~~~~l~~l 72 (627)
++...+|++||.+||.++. +| +|+... ++ |.| .||.|+-.
T Consensus 264 ~~~~~~d~~ALl~~k~~l~-~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~--------------- 322 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEALD-GK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNN--------------- 322 (876)
T ss_dssp CCHHHHHHHHHHHHHHHTT-GG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTT---------------
T ss_pred cccchHHHHHHHHHHHHcC-CC-----CCCcCCCcccccCCccccccccccccccCcCceEecCC---------------
Confidence 4455679999999999995 44 675433 44 999 99999541
Q ss_pred CCCCEEECCCCCCcccCCcccCCCCCCCEEeC-CCCcCcccCCccccCC-CCCCEEE---------------ccCccccc
Q 037951 73 SFLREINLMNNTIQGEIPLEFGRLRRLETLLL-SDNSLVGKIPANLSYC-SRLTVLV---------------LGNNKLVG 135 (627)
Q Consensus 73 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L-~~n~i~~~~~~~~~~l-~~L~~L~---------------ls~n~l~~ 135 (627)
.+++.|+|+++.+.|.+|.+|+++++|++|+| ++|.+.+..|...... ..+.... .....+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 36788999999999999999999999999999 8887776533221111 0000000 00000000
Q ss_pred c-----------CCccccCCCCCCeeeCCC--CCCCCCCCCCCCCCCCCCEEECCCCCCCC-----------------CC
Q 037951 136 S-----------IPFEFVSLYKLKQLALPM--NNLTGGIPPFLGNLTSLEVVSLAGNPFGG-----------------NI 185 (627)
Q Consensus 136 ~-----------~~~~l~~l~~L~~L~l~~--n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-----------------~~ 185 (627)
. .+........++.+.+.. |.+++ +|..++++++|++|++++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 0 011112223444444444 66665 77778888888888888888876 27
Q ss_pred CCccC--CCCCccEEEeeCccccccCCccccCCCCCcEEEeeccc-Ccc-CCChhhhh------cCCCCceeccCCcccc
Q 037951 186 PDSLG--QLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQ-MHG-SLPPSLGL------YFPNLKLFQTNENFFS 255 (627)
Q Consensus 186 ~~~l~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~~~~------~~~~L~~L~l~~~~~~ 255 (627)
|..++ ++++|++|++++|.+.+.+|..++++++|+.|++++|. +++ .+|..+.. .+++|+.|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 77776 88888888888888888888888888888888888887 777 67766553 2458999999999888
Q ss_pred ccCCc--cccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCc-ccEEEccCccc
Q 037951 256 GSIPI--SLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSK-LQVLSLGGNQF 332 (627)
Q Consensus 256 ~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~n~~ 332 (627)
.+|. .+..+++|+.|++++|.+. .+| .++.+++|+.|++++|.++. ++..+..+++ |+.|++++|.+
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~-------lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEE-------IPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSC-------CCTTSCEECTTCCEEECCSSCC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCcccc-------chHHHhhccccCCEEECcCCCC
Confidence 7887 8889999999999999987 566 78899999999999998874 3445777888 99999999998
Q ss_pred ccccchhHHhcc-ccccEEEeecccccccCcccc---c--CCCCCCEEeCCCCccccccchh-hcCCCCCcEeeccCCcc
Q 037951 333 RGALPHSIANLS-SQLQILVLGTNQLYGSIPSGI---G--NLVNLYSLQTEENQFTGSIPKE-MGKLLNLQGLDFGGNHF 405 (627)
Q Consensus 333 ~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~~ 405 (627)
+ .+|..+.... ++|+.|++++|++.+.+|... . .+++|+.|++++|.++ .+|.. +..+++|+.|++++|++
T Consensus 632 ~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L 709 (876)
T 4ecn_A 632 K-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLM 709 (876)
T ss_dssp C-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCC
T ss_pred C-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcC
Confidence 8 7776665543 249999999999987665322 2 3458999999999999 45554 45889999999999999
Q ss_pred cccCChhhhC--------CCCCCEEEccCCccccccChhhc--CCCCCCEEECcCCcCcccCCccccccccCccEEEccC
Q 037951 406 SGEIPSTLGN--------LSSLYEIFLGDNNLSGVIPSSLG--NLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAE 475 (627)
Q Consensus 406 ~~~~~~~~~~--------~~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~ 475 (627)
. .+|..+.. +++|+.|++++|+++ .+|..+. .+++|+.|++++|.+.+ +|..+..++++ +.|++++
T Consensus 710 ~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L-~~L~Ls~ 785 (876)
T 4ecn_A 710 T-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL-KAFGIRH 785 (876)
T ss_dssp S-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC-CEEECCC
T ss_pred C-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC-CEEECCC
Confidence 8 55554332 238999999999999 6788886 89999999999999985 78778887777 7888877
Q ss_pred CccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccc
Q 037951 476 NHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP 555 (627)
Q Consensus 476 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 555 (627)
|+ ++++|++.+.+|..+..+++|+.|+|++|.+ +.+|..+. ++|+.||+++|++...-+
T Consensus 786 N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 786 QR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDV 844 (876)
T ss_dssp CB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEEC
T ss_pred CC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccCh
Confidence 65 5566777777888888888888888888888 56666654 588888888888876554
Q ss_pred hhcccCc-CCeeeCcCCccc
Q 037951 556 IFLEALS-LEYLNLSFNDFE 574 (627)
Q Consensus 556 ~~~~~~~-L~~L~ls~n~l~ 574 (627)
..+.... +..+.+.+|+..
T Consensus 845 ~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 845 TSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp GGGHHHHHTTCCEEECCTTS
T ss_pred HHccccccchheeecCCCcc
Confidence 4444433 556666666543
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-48 Score=420.73 Aligned_cols=507 Identities=18% Similarity=0.178 Sum_probs=391.6
Q ss_pred eeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcc
Q 037951 53 TCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNK 132 (627)
Q Consensus 53 ~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~ 132 (627)
..++++.+++.+ |..+. +++++|++++|.+++..+.+|.++++|++|++++|.+++..+..|+++++|++|++++|+
T Consensus 11 ~~~c~~~~l~~i-p~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 87 (570)
T 2z63_A 11 TYQCMELNFYKI-PDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (570)
T ss_dssp EEECCSSCCSSC-CSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEEeCCCCcccc-CCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc
Confidence 345556566543 44343 579999999999998888899999999999999999998888889999999999999999
Q ss_pred ccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCccCCCCCccEEEeeCccccccCCc
Q 037951 133 LVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGG-NIPDSLGQLKELKTLGIGGNNLSGSIPP 211 (627)
Q Consensus 133 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 211 (627)
++...+..|.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~ 167 (570)
T 2z63_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGG
T ss_pred CCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHH
Confidence 998888899999999999999999997666679999999999999999986 3688999999999999999999877778
Q ss_pred cccCCCCC----cEEEeecccCccCCChhhhhcCCCCceeccCCccccc-cCCccccCCCCCcEeeccccccc------c
Q 037951 212 SIYNLSFL----VIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSG-SIPISLSNASKLEYVEIASNSFF------G 280 (627)
Q Consensus 212 ~l~~l~~L----~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~------~ 280 (627)
.++.+++| +.+++++|.+.+..+..+. ..+|+.+++++|.... .++..+..++.++...+....+. .
T Consensus 168 ~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 245 (570)
T 2z63_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245 (570)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEE
T ss_pred HccchhccchhhhhcccCCCCceecCHHHhc--cCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhh
Confidence 88888887 8899999999876665554 2378888888874332 34445566777766655433221 1
Q ss_pred cCccCcCCCCC--cCEEeccCc-cCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccc
Q 037951 281 KLSVNFGGMKN--LSYLILEYN-NLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQL 357 (627)
Q Consensus 281 ~~~~~l~~l~~--L~~L~l~~n-~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l 357 (627)
.....+.++++ ++.++++++ .+.+ ..+..+..+++|+.|++++|.+. .+|..+... +|++|++++|.+
T Consensus 246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~------~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~ 316 (570)
T 2z63_A 246 FDKSALEGLCNLTIEEFRLAYLDYYLD------DIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKF 316 (570)
T ss_dssp CCTTTTGGGGGSEEEEEEEEETTEEES------CSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBC
T ss_pred cchhhhccccccchhhhhhhcchhhhh------hchhhhcCcCcccEEEecCccch-hhhhhhccC--CccEEeeccCcc
Confidence 11122333322 445555554 3333 23446677788888888888887 566666555 688888888888
Q ss_pred cccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccC--ChhhhCCCCCCEEEccCCccccccCh
Q 037951 358 YGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEI--PSTLGNLSSLYEIFLGDNNLSGVIPS 435 (627)
Q Consensus 358 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~ 435 (627)
. .+|. ..+++|+.|++++|.+.+..+. ..+++|+.|++++|.+.+.. +..+..+++|++|++++|.+.+..+.
T Consensus 317 ~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 391 (570)
T 2z63_A 317 G-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN 391 (570)
T ss_dssp S-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE
T ss_pred c-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc
Confidence 7 4444 4678888888888887755543 67788888888888887543 56777888888888888888755444
Q ss_pred hhcCCCCCCEEECcCCcCcccCC-ccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccc-ccCCccccCC
Q 037951 436 SLGNLERLAILEMFANELSGTIP-GDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLS-GEIPSELGLC 513 (627)
Q Consensus 436 ~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l 513 (627)
+..+++|+.|++++|.+.+..+ ..+..++++ ++|++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+
T Consensus 392 -~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l 469 (570)
T 2z63_A 392 -FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469 (570)
T ss_dssp -EETCTTCCEEECTTSEEESCTTSCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred -ccccCCCCEEEccCCccccccchhhhhcCCCC-CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcc
Confidence 7888888888888888876555 356677777 88888888888877888888888888888888886 4678888888
Q ss_pred CCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCC
Q 037951 514 SSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTR 580 (627)
Q Consensus 514 ~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~ 580 (627)
++|++|++++|.+++..|..+..+++|+.|++++|.+.+..|..+..++ |++|++++|++.+..|..
T Consensus 470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 8888888888888888788888888888888888888877777777777 888888888888877753
No 15
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.9e-48 Score=420.79 Aligned_cols=486 Identities=21% Similarity=0.187 Sum_probs=411.0
Q ss_pred eecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccc
Q 037951 54 CDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKL 133 (627)
Q Consensus 54 c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l 133 (627)
-|++++.+++..+..|..+++|++|++++|.+++..+.+|.++++|++|++++|.+++..|..|+++++|++|++++|++
T Consensus 33 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 112 (570)
T 2z63_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 112 (570)
T ss_dssp EECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccc
Confidence 48999999999889999999999999999999988888999999999999999999988888999999999999999999
Q ss_pred cccCCccccCCCCCCeeeCCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCc----cEEEeeCcccccc
Q 037951 134 VGSIPFEFVSLYKLKQLALPMNNLTG-GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKEL----KTLGIGGNNLSGS 208 (627)
Q Consensus 134 ~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L----~~L~l~~n~~~~~ 208 (627)
+...+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+.+..+..+..+++| +.+++++|.+.+.
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~ 192 (570)
T 2z63_A 113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 192 (570)
T ss_dssp CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred ccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceec
Confidence 96666679999999999999999987 468999999999999999999998778888888888 8999999999987
Q ss_pred CCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCcccc------ccCCccccCCC--CCcEeecccc-ccc
Q 037951 209 IPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFS------GSIPISLSNAS--KLEYVEIASN-SFF 279 (627)
Q Consensus 209 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~------~~~~~~l~~~~--~L~~L~l~~~-~~~ 279 (627)
.+..+... +|+.+++++|.............+++++...+....+. ......+..+. .++.+++.++ .+.
T Consensus 193 ~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~ 271 (570)
T 2z63_A 193 QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271 (570)
T ss_dssp CTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEE
T ss_pred CHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhh
Confidence 77777666 89999999985543222222333566655444322211 11112222222 3567777777 667
Q ss_pred ccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccc
Q 037951 280 GKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYG 359 (627)
Q Consensus 280 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 359 (627)
+..+..+..+++|+.|++++|.++.+ +..+..+ +|++|++++|.+. .+|. ... ++|+.|++++|.+.+
T Consensus 272 ~~~~~~~~~l~~L~~L~l~~~~l~~l-------~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l-~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 272 DDIIDLFNCLTNVSSFSLVSVTIERV-------KDFSYNF-GWQHLELVNCKFG-QFPT--LKL-KSLKRLTFTSNKGGN 339 (570)
T ss_dssp SCSTTTTGGGTTCSEEEEESCEECSC-------CBCCSCC-CCSEEEEESCBCS-SCCB--CBC-SSCCEEEEESCBSCC
T ss_pred hhchhhhcCcCcccEEEecCccchhh-------hhhhccC-CccEEeeccCccc-ccCc--ccc-cccCEEeCcCCcccc
Confidence 77788889999999999999988763 3456666 9999999999998 5554 233 489999999999876
Q ss_pred cCcccccCCCCCCEEeCCCCcccccc--chhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccC-hh
Q 037951 360 SIPSGIGNLVNLYSLQTEENQFTGSI--PKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIP-SS 436 (627)
Q Consensus 360 ~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~ 436 (627)
..+. ..+++|+.|++++|.+++.. +..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..
T Consensus 340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence 6554 78899999999999988654 67888999999999999999865444 8899999999999999987655 56
Q ss_pred hcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccc-cCCCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 037951 437 LGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFV-GSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSS 515 (627)
Q Consensus 437 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 515 (627)
+..+++|++|++++|.+.+..|..+..++.+ ++|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcC-cEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 8899999999999999998888888999999 99999999997 578889999999999999999999888999999999
Q ss_pred CCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccch
Q 037951 516 LEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPI 556 (627)
Q Consensus 516 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~ 556 (627)
|++|++++|++++..+..+..+++|+.|++++|++.+..|.
T Consensus 496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99999999999998888899999999999999999987763
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3e-47 Score=410.63 Aligned_cols=485 Identities=19% Similarity=0.218 Sum_probs=298.9
Q ss_pred CCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCC
Q 037951 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPM 154 (627)
Q Consensus 75 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 154 (627)
..+.|.++++++ .+|..+. ++|++|++++|++++..|..|.++++|++|++++|++++..|.+|.++++|++|++++
T Consensus 7 ~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~ 83 (549)
T 2z81_A 7 SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSD 83 (549)
T ss_dssp TSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCC
Confidence 344688888887 6676654 7999999999999988888999999999999999999988888999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCccCCCCCccEEEeeCccccccCC-ccccCCCCCcEEEeecccCccC
Q 037951 155 NNLTGGIPPFLGNLTSLEVVSLAGNPFGGN-IPDSLGQLKELKTLGIGGNNLSGSIP-PSIYNLSFLVIFSVSENQMHGS 232 (627)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~ 232 (627)
|.+++..+..++++++|++|++++|.+.+. .+..+.++++|++|++++|.+.+.++ ..+..+++|+.|++++|.+.+.
T Consensus 84 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 163 (549)
T 2z81_A 84 NHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163 (549)
T ss_dssp SCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc
Confidence 999987777799999999999999999863 46788999999999999998444444 6788899999999999988877
Q ss_pred CChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccC---ccCcCCCCCcCEEeccCccCCCCCCCC
Q 037951 233 LPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKL---SVNFGGMKNLSYLILEYNNLGSGESDE 309 (627)
Q Consensus 233 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~~n~l~~~~~~~ 309 (627)
.|..+.. +++|++|+++.+.+.......+..+++|++|++++|.+.+.. ......+++|+.|++++|.+++....
T Consensus 164 ~~~~l~~-l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~- 241 (549)
T 2z81_A 164 QSQSLKS-IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN- 241 (549)
T ss_dssp CTTTTTT-CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH-
T ss_pred Chhhhhc-cccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH-
Confidence 7766654 667777777776654322222334666777777766665532 11123455666666666655431111
Q ss_pred ccccccCCCCCcccEEEccCcccccccc------hhHHhccccccEEEeeccccccc-----CcccccCCCCCCEEeCCC
Q 037951 310 MGFMNSLANCSKLQVLSLGGNQFRGALP------HSIANLSSQLQILVLGTNQLYGS-----IPSGIGNLVNLYSLQTEE 378 (627)
Q Consensus 310 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~------~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~ 378 (627)
.+...+..+++|+.+++++|.+.+... ..+... ++++.|++.++.+... ++..+...++|+.|++++
T Consensus 242 -~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~ 319 (549)
T 2z81_A 242 -ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL-GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319 (549)
T ss_dssp -HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCC-TTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEES
T ss_pred -HHHHHhhhhccccccccccccccccccccccchhhhhhh-cccccccccccccchhhhcccchhhhhhcccceEEEecc
Confidence 122233445566666666665543210 011112 2455555555544321 111112234555566655
Q ss_pred Cccccccchhh-cCCCCCcEeeccCCcccccCCh---hhhCCCCCCEEEccCCccccccC--hhhcCCCCCCEEECcCCc
Q 037951 379 NQFTGSIPKEM-GKLLNLQGLDFGGNHFSGEIPS---TLGNLSSLYEIFLGDNNLSGVIP--SSLGNLERLAILEMFANE 452 (627)
Q Consensus 379 n~~~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~---~~~~~~~L~~L~l~~n~~~~~~~--~~l~~l~~L~~L~l~~n~ 452 (627)
|.+. .+|..+ ..+++|+.|++++|.+.+..+. .++.+++|++|++++|.+++..+ ..+..+++|++|++++|+
T Consensus 320 n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 398 (549)
T 2z81_A 320 SKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398 (549)
T ss_dssp SCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred Cccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence 5554 344333 3455566666666655544322 24455556666666665553321 235555556666666655
Q ss_pred CcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCCh
Q 037951 453 LSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPS 532 (627)
Q Consensus 453 l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~ 532 (627)
+. .+|..+..++++ ++|++++|++.+ ++..+ .++|++|++++|++++.. ..+++|++|++++|+++ .+|.
T Consensus 399 l~-~lp~~~~~~~~L-~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~ 468 (549)
T 2z81_A 399 FH-PMPDSCQWPEKM-RFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD 468 (549)
T ss_dssp CC-CCCSCCCCCTTC-CEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC
T ss_pred Cc-cCChhhcccccc-cEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC
Confidence 55 455555555555 555555555542 22222 145555555555555321 34555555555555555 3333
Q ss_pred hccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCC
Q 037951 533 FFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLP 578 (627)
Q Consensus 533 ~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p 578 (627)
...+++|+.|++++|++.+..|..+..++ |+.|++++|++.+..|
T Consensus 469 -~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 469 -ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp -GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred -cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 23455555555555555555555455554 5555555555555444
No 17
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.5e-45 Score=401.27 Aligned_cols=532 Identities=18% Similarity=0.164 Sum_probs=395.9
Q ss_pred cceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccC
Q 037951 51 GITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGN 130 (627)
Q Consensus 51 ~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~ 130 (627)
+.+.++++.+++.+ |..+. +++++|||++|.|++..+.+|.++++|++|+|++|+|++..+.+|+++++|++|+|++
T Consensus 33 ~~~~~c~~~~l~~v-P~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 33 NITYQCMELNFYKI-PDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp TTEEECTTSCCSSC-CSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCCcCcc-CCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccC
Confidence 44556777777754 55443 4899999999999987788999999999999999999988888899999999999999
Q ss_pred ccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-CCCccCCCCCccEEEeeCccccccC
Q 037951 131 NKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGN-IPDSLGQLKELKTLGIGGNNLSGSI 209 (627)
Q Consensus 131 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~ 209 (627)
|++++..+..|.++++|++|++++|.+++..+..|+++++|++|++++|.+.+. .|..+..+++|++|++++|.+++..
T Consensus 110 N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 189 (635)
T 4g8a_A 110 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 189 (635)
T ss_dssp CCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccc
Confidence 999977778899999999999999999977777899999999999999999753 5778899999999999999999877
Q ss_pred CccccCCCC----CcEEEeecccCccCCChhhhhcCCCCceeccCCccccc-cCCccccCCCCCcEeecccccc------
Q 037951 210 PPSIYNLSF----LVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSG-SIPISLSNASKLEYVEIASNSF------ 278 (627)
Q Consensus 210 ~~~l~~l~~----L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~------ 278 (627)
+..+..+.+ ...++++.|.+....+... . ...++.+++.++.... ..+..+..+..++...+..+..
T Consensus 190 ~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 267 (635)
T 4g8a_A 190 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-K-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 267 (635)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-T-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred cccccchhhhhhhhhhhhcccCcccccCcccc-c-chhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence 777765544 3467888888875444332 2 3455667777665442 2233455666666655543322
Q ss_pred cccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeeccccc
Q 037951 279 FGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLY 358 (627)
Q Consensus 279 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 358 (627)
.......+.....+....+..+....... .....+....+++.+.+.++.+....+ +.... .++.|++.+|.+.
T Consensus 268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~-~L~~L~l~~~~~~ 341 (635)
T 4g8a_A 268 EKFDKSALEGLCNLTIEEFRLAYLDYYLD---GIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNF-GWQHLELVNCKFG 341 (635)
T ss_dssp SCCCTTTTGGGGGSEEEEEEEECCCSCEE---ECTTTTGGGTTCSEEEEESCEEEECGG--GGSCC-CCSEEEEESCEES
T ss_pred ccccccccccccchhhhhhhhhhhccccc---chhhhhhhhcccccccccccccccccc--cccch-hhhhhhccccccc
Confidence 11222234444555555554443322111 223345566778888888887764332 22233 7888888888876
Q ss_pred ccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCccc--ccCChhhhCCCCCCEEEccCCccccccChh
Q 037951 359 GSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFS--GEIPSTLGNLSSLYEIFLGDNNLSGVIPSS 436 (627)
Q Consensus 359 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 436 (627)
...+ ..++.|+.+++..|...... ....+++|+.+++++|.+. +..+..+..+.+|+.+++..+.... .+..
T Consensus 342 ~~~~---~~l~~L~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~ 415 (635)
T 4g8a_A 342 QFPT---LKLKSLKRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSN 415 (635)
T ss_dssp SCCC---CBCTTCCEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSC
T ss_pred CcCc---ccchhhhhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-cccc
Confidence 4433 34567888888888765332 3456788888888888875 3355566778888888888888764 4456
Q ss_pred hcCCCCCCEEECcCCcCcccCCc-cccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccc-ccCCccccCCC
Q 037951 437 LGNLERLAILEMFANELSGTIPG-DIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLS-GEIPSELGLCS 514 (627)
Q Consensus 437 l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~l~~l~ 514 (627)
+..+++|+.+++..+......+. .+..+..+ +.++++.|.+.+..+..+..+++++.|++++|.+. +..|..+..++
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l-~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 494 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccccccccchhhhhcccccccccccccccccc-ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhcc
Confidence 77788888888888877655443 34556666 78888888888888888888888899999888743 45677888888
Q ss_pred CCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCC--CccCCCCcccc
Q 037951 515 SLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTR--GIFANASAISV 591 (627)
Q Consensus 515 ~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~--~~~~~l~~l~~ 591 (627)
+|++|+|++|++++..|..|.++++|++|++++|++.+..|..+..++ |++||+++|++++..|.. ..+++|+.+++
T Consensus 495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 899999999988888888888888999999999988877777777777 889999999888877753 23468888999
Q ss_pred ccCCCCccc
Q 037951 592 GGCNRLCGG 600 (627)
Q Consensus 592 ~~n~~l~~~ 600 (627)
.+||+.|++
T Consensus 575 ~~Np~~C~C 583 (635)
T 4g8a_A 575 TQNDFACTC 583 (635)
T ss_dssp TTCCBCCSG
T ss_pred eCCCCcccC
Confidence 999988864
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.2e-46 Score=399.54 Aligned_cols=462 Identities=19% Similarity=0.207 Sum_probs=261.9
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCC
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMN 155 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 155 (627)
++||+++|+++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 45666666666 4555444 66677777777666555566666677777777777666655666666677777777777
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCccCCCCCccEEEeeCccccccCCccccCCCCC--cEEEeecccC--c
Q 037951 156 NLTGGIPPFLGNLTSLEVVSLAGNPFGG-NIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFL--VIFSVSENQM--H 230 (627)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L--~~L~l~~n~l--~ 230 (627)
.++ .+|.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+.+ ..+..+++| +.|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 666 34444 56667777777776665 345666666777777777666654 334455555 6666666666 4
Q ss_pred cCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCc
Q 037951 231 GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEM 310 (627)
Q Consensus 231 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 310 (627)
+..|..+...-.+...+++++|.+.+.++ ...+..+++|+.+++++|..........
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~-----------------------~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 210 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFIL-----------------------DVSVKTVANLELSNIKCVLEDNKCSYFL 210 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCC-----------------------CCCCTTCSEEEECCEEECCSTTTTHHHH
T ss_pred ccccccccccccceEEEEeccCcchhhhh-----------------------hhhhhcccceeeccccccccccccceee
Confidence 44443322200011122333333222111 1123334444444444432000000000
Q ss_pred cccccCCCCCcccEEEccCcccccccchhHHhc--cccccEEEeecccccccCcccc-----cCCCCCCEEeCCCCcccc
Q 037951 311 GFMNSLANCSKLQVLSLGGNQFRGALPHSIANL--SSQLQILVLGTNQLYGSIPSGI-----GNLVNLYSLQTEENQFTG 383 (627)
Q Consensus 311 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~ 383 (627)
+....+..+++|+.|++++|.+.+..+..+... .++|++|++++|.+++.+|..+ ..+++|+.+++++|.+
T Consensus 211 ~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-- 288 (520)
T 2z7x_B 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-- 288 (520)
T ss_dssp HHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--
T ss_pred cchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--
Confidence 011234445555566665555543322222110 1256666666666666666655 6666666666666666
Q ss_pred ccc-hhhcCC---CCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcc--cC
Q 037951 384 SIP-KEMGKL---LNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSG--TI 457 (627)
Q Consensus 384 ~~~-~~~~~l---~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~ 457 (627)
.+| ..+..+ ++|+.|++++|.+.... .+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+ .+
T Consensus 289 ~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 366 (520)
T 2z7x_B 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKI 366 (520)
T ss_dssp CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHH
T ss_pred ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccc
Confidence 233 333333 45666666666655321 12456666677777776666566666666667777777666664 34
Q ss_pred CccccccccCccEEEccCCccccCCCc-cccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccC
Q 037951 458 PGDIFNISSLSVSLDLAENHFVGSIPP-RIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRT 536 (627)
Q Consensus 458 ~~~~~~~~~ll~~L~l~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~ 536 (627)
|..+..++.+ ++|++++|.+.+.+|. .+..+++|++|++++|.+++..|..+. ++|++|++++|.++ .+|..+..
T Consensus 367 ~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~ 442 (520)
T 2z7x_B 367 AEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK 442 (520)
T ss_dssp HHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGG
T ss_pred hHHHhhCCCC-CEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhc
Confidence 4555666666 6677777766654443 356667777777777777656555543 56777777777776 45555556
Q ss_pred CCCCCEEECCCCcCccccchh-cccCc-CCeeeCcCCcccccCC
Q 037951 537 SRGIRKVDLSRNNFFGQIPIF-LEALS-LEYLNLSFNDFEGRLP 578 (627)
Q Consensus 537 l~~L~~L~ls~n~l~~~~p~~-~~~~~-L~~L~ls~n~l~~~~p 578 (627)
+++|++|++++|++. .+|.. +..++ |++|++++|++.+..+
T Consensus 443 l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 443 LEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence 777777777777776 34443 55555 7777777777765443
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.8e-47 Score=415.20 Aligned_cols=466 Identities=20% Similarity=0.277 Sum_probs=367.6
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcccc------c------cCCccccCCCCCCeeeCCCCCCCCCCCCC
Q 037951 97 RRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLV------G------SIPFEFVSLYKLKQLALPMNNLTGGIPPF 164 (627)
Q Consensus 97 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~------~------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 164 (627)
.+++.|+|+++.+.|.+|.+++++++|++|++++|.+. + .+|... +..|+ ++++++.+.+.++..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 58899999999999999999999999999999999762 1 223222 44566 777777777666665
Q ss_pred CCCC-CCCCEEECCCCCCCCCCCCccCCCCCccEEEe--eCccccccCCccccCCCCCcEEEeecccCccC-CChhhhhc
Q 037951 165 LGNL-TSLEVVSLAGNPFGGNIPDSLGQLKELKTLGI--GGNNLSGSIPPSIYNLSFLVIFSVSENQMHGS-LPPSLGLY 240 (627)
Q Consensus 165 l~~l-~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l--~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~ 240 (627)
+..+ ..+..+++....+.. .....++.+.+ ..|.+++ +|..++++++|+.|++++|.+++. ++..+.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-- 228 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE-- 228 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS--
T ss_pred HHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccc--
Confidence 5521 222223333222221 11122222222 3567776 888888999999999998888763 211110
Q ss_pred CCCCceeccCCccccccCCcccc--CCCCCcEeecccccccccCccCcCCCCCcCEEeccCcc-CCCCCCCCccccccCC
Q 037951 241 FPNLKLFQTNENFFSGSIPISLS--NASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNN-LGSGESDEMGFMNSLA 317 (627)
Q Consensus 241 ~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~ 317 (627)
+ -......+.+|..+. ++++|++|++++|.+.+.+|..++++++|++|++++|. +++. .++..+.
T Consensus 229 -~------~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~-----~lp~~~~ 296 (636)
T 4eco_A 229 -N------ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGE-----QLKDDWQ 296 (636)
T ss_dssp -C------TTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHH-----HHHHHHH
T ss_pred -c------cccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccc-----cchHHHH
Confidence 0 011122234777777 88888999998888888888888888999999999887 6540 1233333
Q ss_pred ------CCCcccEEEccCcccccccch--hHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhh
Q 037951 318 ------NCSKLQVLSLGGNQFRGALPH--SIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEM 389 (627)
Q Consensus 318 ------~~~~L~~L~l~~n~~~~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 389 (627)
.+++|++|++++|+++ .+|. .+..+. +|++|++++|.+++.+| .+..+++|+.|++++|.++ .+|..+
T Consensus 297 ~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l 372 (636)
T 4eco_A 297 ALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANF 372 (636)
T ss_dssp HHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTS
T ss_pred hhhccccCCCCCEEECCCCcCC-ccCchhhhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhh
Confidence 3489999999999999 8888 788887 89999999999998888 8999999999999999999 788889
Q ss_pred cCCCC-CcEeeccCCcccccCChhhhCCC--CCCEEEccCCccccccChhhc-------CCCCCCEEECcCCcCcccCCc
Q 037951 390 GKLLN-LQGLDFGGNHFSGEIPSTLGNLS--SLYEIFLGDNNLSGVIPSSLG-------NLERLAILEMFANELSGTIPG 459 (627)
Q Consensus 390 ~~l~~-L~~L~L~~n~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~~~~~l~-------~l~~L~~L~l~~n~l~~~~~~ 459 (627)
..+++ |+.|++++|.++ .+|..+..++ +|++|++++|.+++..|..+. .+++|+.|++++|.+. .+|.
T Consensus 373 ~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~ 450 (636)
T 4eco_A 373 CGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPK 450 (636)
T ss_dssp EEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCT
T ss_pred hhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCH
Confidence 99999 999999999999 7888777654 899999999999998888888 7889999999999999 7777
Q ss_pred cccc-cccCccEEEccCCccccCCCcc-ccCC-------CCCCEEEccCCcccccCCcccc--CCCCCCEEECCCCcccc
Q 037951 460 DIFN-ISSLSVSLDLAENHFVGSIPPR-IGNL-------KALRCFDVSNNDLSGEIPSELG--LCSSLEEIYLAENFFNG 528 (627)
Q Consensus 460 ~~~~-~~~ll~~L~l~~n~l~~~~~~~-l~~l-------~~L~~L~Ls~n~l~~~~~~~l~--~l~~L~~L~L~~n~i~~ 528 (627)
.++. ++.+ ++|++++|++. .+|.. +... ++|++|++++|+++ .+|..+. .+++|+.|++++|.+++
T Consensus 451 ~~~~~l~~L-~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 451 ELFSTGSPL-SSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp HHHHTTCCC-SEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred HHHccCCCC-CEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC
Confidence 6554 7778 99999999998 55543 3333 39999999999999 8888887 99999999999999998
Q ss_pred cCChhccCCCCCCEEEC------CCCcCccccchhcccCc-CCeeeCcCCcccccCCCCCccCCCCccccccCCCCc
Q 037951 529 FIPSFFRTSRGIRKVDL------SRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLC 598 (627)
Q Consensus 529 ~~~~~l~~l~~L~~L~l------s~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~~~~~~l~~l~~~~n~~l~ 598 (627)
+|..+..+++|+.|++ ++|.+.+.+|..+..++ |++|++++|++ +.+|.. .+++|+.+++.+||..|
T Consensus 528 -ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNIS 601 (636)
T ss_dssp -CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCE
T ss_pred -cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCcc
Confidence 8888999999999999 56788889999999888 99999999999 788865 44899999999999877
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-45 Score=394.16 Aligned_cols=455 Identities=17% Similarity=0.197 Sum_probs=324.4
Q ss_pred eeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcc
Q 037951 53 TCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNK 132 (627)
Q Consensus 53 ~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~ 132 (627)
..|+++++++. +|..+. ++|++|++++|.+++..|.+|.++++|++|++++|++++..|..|+++++|++|++++|+
T Consensus 4 ~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 45889999985 566565 899999999999997777899999999999999999998889999999999999999999
Q ss_pred ccccCCccccCCCCCCeeeCCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCc--cEEEeeCccc--cc
Q 037951 133 LVGSIPFEFVSLYKLKQLALPMNNLTG-GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKEL--KTLGIGGNNL--SG 207 (627)
Q Consensus 133 l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L--~~L~l~~n~~--~~ 207 (627)
++ .+|.. .+++|++|++++|.+++ .+|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+
T Consensus 81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred ee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence 98 56655 89999999999999987 478899999999999999999985 456777888 9999999999 77
Q ss_pred cCCccccCCC-CCcEEEeecccCccCCChhhhhcCCCCceeccCCcc-------ccccCCccccCCCCCcEeeccccccc
Q 037951 208 SIPPSIYNLS-FLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENF-------FSGSIPISLSNASKLEYVEIASNSFF 279 (627)
Q Consensus 208 ~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~l~~~~~L~~L~l~~~~~~ 279 (627)
..|..+..+. ....+++++|.+.+.++......+++|+.+++++|. +.+.++ .+..+++|+.++++++.+.
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC
Confidence 7888887766 344567888888888877766678899999998886 565555 6777888888888887765
Q ss_pred ccCccCc---CCCCCcCEEeccCccCCCCCCCCccccccC-----CCCCcccEEEccCcccccccc-hhHHhcc--cccc
Q 037951 280 GKLSVNF---GGMKNLSYLILEYNNLGSGESDEMGFMNSL-----ANCSKLQVLSLGGNQFRGALP-HSIANLS--SQLQ 348 (627)
Q Consensus 280 ~~~~~~l---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~~~~~~~-~~~~~~~--~~L~ 348 (627)
+.....+ ...++|++|++++|.+++. ++..+ ..+++|+.+++++|.+ .+| ..+.... .+++
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~------~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQ------LDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIK 305 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESC------CCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCc------cccchhhcccccCceeEeccccccce--ecchhhhhcccccCcee
Confidence 4322111 1134677777777776641 22233 5667777777777766 344 3333331 1466
Q ss_pred EEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccc--cCChhhhCCCCCCEEEccC
Q 037951 349 ILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSG--EIPSTLGNLSSLYEIFLGD 426 (627)
Q Consensus 349 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~~~~L~~L~l~~ 426 (627)
.|++++|.+.... .+..+++|+.|++++|++++..|..+..+++|+.|++++|++++ .+|..+..+++|++|++++
T Consensus 306 ~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~ 383 (520)
T 2z7x_B 306 NFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383 (520)
T ss_dssp EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCS
T ss_pred EEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCC
Confidence 6666666554221 01344555555555555554445555555555555555555543 2233344444555555555
Q ss_pred CccccccChhhcCCCCCCEEECcCCcCcccCCcc-ccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc
Q 037951 427 NNLSGVIPSSLGNLERLAILEMFANELSGTIPGD-IFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE 505 (627)
Q Consensus 427 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 505 (627)
|.+++ .+|.. +..++.+ ++|++++|++.+..|..+. ++|++|++++|+++ .
T Consensus 384 N~l~~------------------------~l~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ 435 (520)
T 2z7x_B 384 NSVSY------------------------DEKKGDCSWTKSL-LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-S 435 (520)
T ss_dssp SCCBC------------------------CGGGCSCCCCTTC-CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-C
T ss_pred CcCCc------------------------ccccchhccCccC-CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-c
Confidence 44443 33332 3333444 5555555555554444443 68899999999988 7
Q ss_pred CCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccc
Q 037951 506 IPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP 555 (627)
Q Consensus 506 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 555 (627)
+|..+..+++|++|++++|+++...+..+..+++|+.|++++|++....+
T Consensus 436 ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 436 IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 88877889999999999999985444458889999999999999886544
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.1e-43 Score=387.95 Aligned_cols=506 Identities=22% Similarity=0.198 Sum_probs=408.0
Q ss_pred eecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccc
Q 037951 54 CDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKL 133 (627)
Q Consensus 54 c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l 133 (627)
-|+++|.|+++.+.+|.++++|++|+|++|++++..+++|.++++|++|+|++|++++..+..|+++++|++|++++|++
T Consensus 57 LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l 136 (635)
T 4g8a_A 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL 136 (635)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC
T ss_pred EEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC
Confidence 39999999999889999999999999999999988888999999999999999999977777899999999999999999
Q ss_pred cccCCccccCCCCCCeeeCCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCc----cEEEeeCcccccc
Q 037951 134 VGSIPFEFVSLYKLKQLALPMNNLTG-GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKEL----KTLGIGGNNLSGS 208 (627)
Q Consensus 134 ~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L----~~L~l~~n~~~~~ 208 (627)
++..+..|+++++|++|++++|.+++ ..|..++++++|++|++++|.+++..+..+..+.++ ..++++.|.+...
T Consensus 137 ~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i 216 (635)
T 4g8a_A 137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI 216 (635)
T ss_dssp CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEE
T ss_pred CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccccc
Confidence 97777789999999999999999976 467888999999999999999998878777666544 4788999988854
Q ss_pred CCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccc------cccCCccccCCCCCcEeeccccccc---
Q 037951 209 IPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFF------SGSIPISLSNASKLEYVEIASNSFF--- 279 (627)
Q Consensus 209 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~------~~~~~~~l~~~~~L~~L~l~~~~~~--- 279 (627)
.+. ......++.+++.+|......+......+..++...+..+.. .......+.....+...++..+...
T Consensus 217 ~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 295 (635)
T 4g8a_A 217 QPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 295 (635)
T ss_dssp CTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCE
T ss_pred Ccc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccc
Confidence 444 444456778888888766555544444566666555433222 2222333444555555555444322
Q ss_pred ccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccc
Q 037951 280 GKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYG 359 (627)
Q Consensus 280 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 359 (627)
......+....+++.+.+..+.+... ..+.....++.|++.+|.+....+.. . ..++.+++..|....
T Consensus 296 ~~~~~~~~~~~~l~~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~~~~~~~~~---l-~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 296 DGIIDLFNCLTNVSSFSLVSVTIERV--------KDFSYNFGWQHLELVNCKFGQFPTLK---L-KSLKRLTFTSNKGGN 363 (635)
T ss_dssp EECTTTTGGGTTCSEEEEESCEEEEC--------GGGGSCCCCSEEEEESCEESSCCCCB---C-TTCCEEEEESCCSCC
T ss_pred cchhhhhhhhcccccccccccccccc--------cccccchhhhhhhcccccccCcCccc---c-hhhhhcccccccCCC
Confidence 22334456678889999888876552 24556678999999999887544332 2 378999999998764
Q ss_pred cCcccccCCCCCCEEeCCCCccc--cccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccC-hh
Q 037951 360 SIPSGIGNLVNLYSLQTEENQFT--GSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIP-SS 436 (627)
Q Consensus 360 ~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~ 436 (627)
.. ....+++|+.+++++|.+. +..+..+..+.+|+.+++..+... ..+..+..+++|+.++++++......+ ..
T Consensus 364 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 440 (635)
T 4g8a_A 364 AF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSV 440 (635)
T ss_dssp BC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCT
T ss_pred Cc--ccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccccccccc
Confidence 33 3457899999999999875 345666778899999999999987 445567889999999999988665443 45
Q ss_pred hcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccc-cCCCccccCCCCCCEEEccCCcccccCCccccCCCC
Q 037951 437 LGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFV-GSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSS 515 (627)
Q Consensus 437 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 515 (627)
+..+++++.++++.|.+.+..+..+..+..+ ++|++++|.+. +..|..+..+++|++|++++|++++..|..|+.+++
T Consensus 441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L-~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~ 519 (635)
T 4g8a_A 441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 519 (635)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cccccccccccccccccccccccccccchhh-hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCC
Confidence 7889999999999999998888888888888 89999999854 456788999999999999999999888999999999
Q ss_pred CCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccC-c-CCeeeCcCCccccc
Q 037951 516 LEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL-S-LEYLNLSFNDFEGR 576 (627)
Q Consensus 516 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~-~-L~~L~ls~n~l~~~ 576 (627)
|++|+|++|++++..|..|..+++|++||+++|++++..|..+... + |++|++++|++...
T Consensus 520 L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 520 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp CCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 9999999999999999999999999999999999999999888876 4 99999999999754
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2e-44 Score=398.37 Aligned_cols=461 Identities=18% Similarity=0.186 Sum_probs=362.1
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEEc-cCccccccCCccccCC-CCCCe-----ee------------------
Q 037951 97 RRLETLLLSDNSLVGKIPANLSYCSRLTVLVL-GNNKLVGSIPFEFVSL-YKLKQ-----LA------------------ 151 (627)
Q Consensus 97 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~l-s~n~l~~~~~~~l~~l-~~L~~-----L~------------------ 151 (627)
.+++.|+|+++.+.|.+|..++++++|++|+| ++|.+.+..+...... ..+.. +.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 8888876533221111 00000 00
Q ss_pred -----CCCCCCCCCCCCCCCCCCCCCEEECCC--CCCCCCCCCccCCCCCccEEEeeCccccc-----------------
Q 037951 152 -----LPMNNLTGGIPPFLGNLTSLEVVSLAG--NPFGGNIPDSLGQLKELKTLGIGGNNLSG----------------- 207 (627)
Q Consensus 152 -----l~~n~l~~~~~~~l~~l~~L~~L~L~~--n~~~~~~~~~l~~l~~L~~L~l~~n~~~~----------------- 207 (627)
+..+. ...+........++.+.+.. |.+++ +|..+.++++|++|++++|.+++
T Consensus 403 l~~~~l~~~~--~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 403 LLQDAINRNP--EMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp HHHHHHHTCT--TSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHhhhCc--cccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 00000 00111122333455555544 77887 88999999999999999999998
Q ss_pred cCCcccc--CCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCcc-ccc-cCCccccCCC-------CCcEeecccc
Q 037951 208 SIPPSIY--NLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENF-FSG-SIPISLSNAS-------KLEYVEIASN 276 (627)
Q Consensus 208 ~~~~~l~--~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~l~~~~-------~L~~L~l~~~ 276 (627)
.+|..++ .+++|+.|++++|.+.+.+|..+.. +++|+.|++++|. +++ .+|..+..++ +|+.|++++|
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~-L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGG-CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHHHhC-CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 3899988 9999999999999999999987776 9999999999998 888 7887666554 9999999999
Q ss_pred cccccCcc--CcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeec
Q 037951 277 SFFGKLSV--NFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGT 354 (627)
Q Consensus 277 ~~~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~ 354 (627)
.+. .+|. .++.+++|+.|++++|.++.+ + .+..+++|+.|++++|.+. .+|..+..+..+|+.|++++
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~l-------p-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVRHL-------E-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCCBC-------C-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCS
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcccc-------h-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcC
Confidence 998 6777 899999999999999998742 3 6888999999999999999 88888888873399999999
Q ss_pred ccccccCcccccCCCC--CCEEeCCCCccccccchh---hc--CCCCCcEeeccCCcccccCChh-hhCCCCCCEEEccC
Q 037951 355 NQLYGSIPSGIGNLVN--LYSLQTEENQFTGSIPKE---MG--KLLNLQGLDFGGNHFSGEIPST-LGNLSSLYEIFLGD 426 (627)
Q Consensus 355 n~l~~~~~~~~~~l~~--L~~L~l~~n~~~~~~~~~---~~--~l~~L~~L~L~~n~~~~~~~~~-~~~~~~L~~L~l~~ 426 (627)
|.++ .+|..+...+. |+.|++++|.+.+.+|.. +. .+++|+.|++++|.+. .+|.. +..+++|+.|++++
T Consensus 629 N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 629 NKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSN 706 (876)
T ss_dssp SCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCS
T ss_pred CCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCC
Confidence 9998 77887776654 999999999998765532 22 3458999999999999 55554 55899999999999
Q ss_pred CccccccChhhcC--------CCCCCEEECcCCcCcccCCcccc--ccccCccEEEccCCccccCCCccccCCCCCCEEE
Q 037951 427 NNLSGVIPSSLGN--------LERLAILEMFANELSGTIPGDIF--NISSLSVSLDLAENHFVGSIPPRIGNLKALRCFD 496 (627)
Q Consensus 427 n~~~~~~~~~l~~--------l~~L~~L~l~~n~l~~~~~~~~~--~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 496 (627)
|.++ .+|..+.. +++|+.|++++|.+. .+|..+. .++++ +.|++++|++.+ +|..+.++++|+.|+
T Consensus 707 N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L-~~L~Ls~N~L~~-lp~~l~~L~~L~~L~ 782 (876)
T 4ecn_A 707 NLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL-SNMDVSYNCFSS-FPTQPLNSSQLKAFG 782 (876)
T ss_dssp CCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC-CEEECCSSCCSS-CCCGGGGCTTCCEEE
T ss_pred CcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCc-CEEEeCCCCCCc-cchhhhcCCCCCEEE
Confidence 9998 55554433 238999999999999 8888876 77777 778888887775 676777777777777
Q ss_pred ccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCcCCeeeCcCCccccc
Q 037951 497 VSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDFEGR 576 (627)
Q Consensus 497 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~ls~n~l~~~ 576 (627)
+++|+ ++++|.+.+.+|..+..+++|+.|++++|.+ +.+|..+. ..|+.||+++|++...
T Consensus 783 Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~-~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 783 IRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT-PQLYILDIADNPNISI 842 (876)
T ss_dssp CCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-SSSCEEECCSCTTCEE
T ss_pred CCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc-CCCCEEECCCCCCCcc
Confidence 77776 5677999999999999999999999999999 68887755 2599999999999765
Q ss_pred CCCCC-ccCCCCccccccCCCC
Q 037951 577 LPTRG-IFANASAISVGGCNRL 597 (627)
Q Consensus 577 ~p~~~-~~~~l~~l~~~~n~~l 597 (627)
-+... .........+.+|+..
T Consensus 843 ~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 843 DVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp ECGGGHHHHHTTCCEEECCTTS
T ss_pred ChHHccccccchheeecCCCcc
Confidence 54321 1223445556666544
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9e-43 Score=375.79 Aligned_cols=178 Identities=20% Similarity=0.236 Sum_probs=88.5
Q ss_pred CCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcc--cCCccccccccCccE
Q 037951 393 LNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSG--TIPGDIFNISSLSVS 470 (627)
Q Consensus 393 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~ll~~ 470 (627)
.+|+.|++++|.+.... ....+++|++|++++|.+++..|..+..+++|+.|++++|.+.+ .+|..+..++.+ ++
T Consensus 331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~ 407 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL-ET 407 (562)
T ss_dssp CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-CE
T ss_pred CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC-CE
Confidence 34555555555543211 11344555555555555554445555555555555555555543 122334444455 55
Q ss_pred EEccCCccccCCCc-cccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCc
Q 037951 471 LDLAENHFVGSIPP-RIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNN 549 (627)
Q Consensus 471 L~l~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~ 549 (627)
|++++|.+.+.+|. .+..+++|++|++++|++++..|..+. ++|++|++++|.++ .+|..+..+++|+.|++++|+
T Consensus 408 L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~ 484 (562)
T 3a79_B 408 LDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQ 484 (562)
T ss_dssp EECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSC
T ss_pred EECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCC
Confidence 55555555543332 244555555555555555544444332 45555555555555 344434455555555555555
Q ss_pred Cccccchh-cccCc-CCeeeCcCCcccccC
Q 037951 550 FFGQIPIF-LEALS-LEYLNLSFNDFEGRL 577 (627)
Q Consensus 550 l~~~~p~~-~~~~~-L~~L~ls~n~l~~~~ 577 (627)
+. .+|.. +..++ |+.|++++|++.+..
T Consensus 485 l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 485 LK-SVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp CC-CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CC-CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 55 33332 44444 555555555555443
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.4e-42 Score=368.25 Aligned_cols=456 Identities=18% Similarity=0.183 Sum_probs=274.8
Q ss_pred eeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcc
Q 037951 53 TCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNK 132 (627)
Q Consensus 53 ~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~ 132 (627)
..|++++++++ +|..+. +++++|++++|.+++..+.+|.++++|++|++++|.+++..|..|.++++|++|++++|+
T Consensus 35 ~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 35 MVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp EEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 44667777765 344443 677777777777776555677777777777777777776667777777777777777777
Q ss_pred ccccCCccccCCCCCCeeeCCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCc--cEEEeeCccc--cc
Q 037951 133 LVGSIPFEFVSLYKLKQLALPMNNLTG-GIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKEL--KTLGIGGNNL--SG 207 (627)
Q Consensus 133 l~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L--~~L~l~~n~~--~~ 207 (627)
++ .+|.. .+++|++|++++|.+++ ..|..++++++|++|++++|.+.+. .+..+++| ++|++++|.+ ++
T Consensus 112 l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 112 LQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp CC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCS
T ss_pred CC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccc
Confidence 76 44444 67777777777777765 2346677777777777777777643 23334444 7777777776 55
Q ss_pred cCCccccCCC--CCcEEEeecccCccCCChhhhhcCCCCceeccCCcc-----ccccCCccccCCCCCcEeecccccccc
Q 037951 208 SIPPSIYNLS--FLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENF-----FSGSIPISLSNASKLEYVEIASNSFFG 280 (627)
Q Consensus 208 ~~~~~l~~l~--~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~-----~~~~~~~~l~~~~~L~~L~l~~~~~~~ 280 (627)
..|..+..+. .+ .+++++|.+.+.++......+++|+.+++++|. +.+. ...+..+++++.+++.++.+.+
T Consensus 186 ~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 186 GETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp SSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEEECH
T ss_pred cCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCcCcH
Confidence 5566655543 22 345556665555544444344555555555542 1111 1123344444444444443321
Q ss_pred cCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhH-----HhccccccEEEeecc
Q 037951 281 KLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSI-----ANLSSQLQILVLGTN 355 (627)
Q Consensus 281 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-----~~~~~~L~~L~l~~n 355 (627)
.... ..+.. ...++|++|++++|.+++.+|..+ ..+. .|+.+++..+
T Consensus 264 ~~~~--------------------------~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~-~L~~~~~~~~ 315 (562)
T 3a79_B 264 KCSV--------------------------KLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALK-SLMIEHVKNQ 315 (562)
T ss_dssp HHHH--------------------------HHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCC-EEEEEEEEEC
T ss_pred HHHH--------------------------HHHHh-hhcccccEEEEeccEeeccccchhhhcccccch-heehhhcccc
Confidence 1000 00000 112245555555555554444433 2221 2333333333
Q ss_pred cccccCc-cccc---CCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCcccc
Q 037951 356 QLYGSIP-SGIG---NLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSG 431 (627)
Q Consensus 356 ~l~~~~~-~~~~---~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 431 (627)
.+ .+| ..+. ...+|+.|++++|.+.... ....+++|+.|++++|.+++..|..+..+++|++|++++|.+++
T Consensus 316 ~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 391 (562)
T 3a79_B 316 VF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391 (562)
T ss_dssp CC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred ee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence 33 112 1111 1145666666666554221 11456667777777777666666666667777777777776664
Q ss_pred --ccChhhcCCCCCCEEECcCCcCcccCCcc-ccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCc
Q 037951 432 --VIPSSLGNLERLAILEMFANELSGTIPGD-IFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPS 508 (627)
Q Consensus 432 --~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~ 508 (627)
..|..+..+++|+.|++++|.+.+.+|.. +..++.+ ++|++++|++.+..|..+. ++|++|++++|+++ .+|.
T Consensus 392 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~ 467 (562)
T 3a79_B 392 FFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI-LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPK 467 (562)
T ss_dssp TTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC-CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCT
T ss_pred cccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC-CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccCh
Confidence 22345666777777777777776545543 4455566 7777777777765555443 68999999999998 7888
Q ss_pred cccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccc
Q 037951 509 ELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP 555 (627)
Q Consensus 509 ~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 555 (627)
.+..+++|++|++++|+++...+..+..+++|+.|++++|++.+..+
T Consensus 468 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 468 DVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred hhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 77799999999999999995444448899999999999999987555
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.1e-40 Score=347.20 Aligned_cols=391 Identities=19% Similarity=0.200 Sum_probs=258.8
Q ss_pred CCCCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCccc-CCccccCCCCC
Q 037951 45 HFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGK-IPANLSYCSRL 123 (627)
Q Consensus 45 ~~c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~-~~~~~~~l~~L 123 (627)
..|.|.+...++.+++++.. |. +. ++|++|++++|.+++..|..|.++++|++|++++|.+.+. .+..|.++++|
T Consensus 6 ~~c~~~~~~~~c~~~~l~~l-p~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L 81 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQV-PE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81 (455)
T ss_dssp -CCEEETTEEECCSSCCSSC-CC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred ceeEEEccccCcCCCCcccC-CC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccC
Confidence 45777776667777777654 33 32 7899999999999988899999999999999999998744 46679999999
Q ss_pred CEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCC--CCCCCCCCEEECCCCCCCCCCCCc-cCCCCCccEEEe
Q 037951 124 TVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPF--LGNLTSLEVVSLAGNPFGGNIPDS-LGQLKELKTLGI 200 (627)
Q Consensus 124 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~L~~n~~~~~~~~~-l~~l~~L~~L~l 200 (627)
++|++++|++++..|..++++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..|.. +..+++|++|++
T Consensus 82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 99999999999888999999999999999999998744444 899999999999999999877766 889999999999
Q ss_pred eCccccccCCccccCC--CCCcEEEeecccCccCCChhhhh-------cCCCCceeccCCccccccCCccccCC---CCC
Q 037951 201 GGNNLSGSIPPSIYNL--SFLVIFSVSENQMHGSLPPSLGL-------YFPNLKLFQTNENFFSGSIPISLSNA---SKL 268 (627)
Q Consensus 201 ~~n~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L 268 (627)
++|.+.+..+..+..+ .+++.+++++|.+.+..+..+.. ..++|++|++++|.+.+..+..+... ++|
T Consensus 162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L 241 (455)
T 3v47_A 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKI 241 (455)
T ss_dssp TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCE
T ss_pred CCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccce
Confidence 9999998888877765 67888888888887543332210 13445555555555554444333322 444
Q ss_pred cEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhcccccc
Q 037951 269 EYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQ 348 (627)
Q Consensus 269 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~ 348 (627)
+.+++++|...+.... .+.+...... ...-...++|+.|++++|.+++..|..+..+. +|+
T Consensus 242 ~~L~l~~~~~~~~~~~--------------~~~~~~~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~ 302 (455)
T 3v47_A 242 QSLILSNSYNMGSSFG--------------HTNFKDPDNF----TFKGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLE 302 (455)
T ss_dssp EEEECTTCTTTSCCTT--------------CCSSCCCCTT----TTGGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCC
T ss_pred eeEeeccccccccccc--------------hhhhccCccc----ccccccccCceEEEecCccccccchhhcccCC-CCC
Confidence 4444444433221100 0001000000 00001124566666666666655555555554 566
Q ss_pred EEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCc
Q 037951 349 ILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNN 428 (627)
Q Consensus 349 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 428 (627)
+|++++|++.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++++..|..|..+++|++|++++|+
T Consensus 303 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 66666666655555555556666666666666655555555556666666666666655555555556666666666666
Q ss_pred cccccChhhcCCCCCCEEECcCCcCcccCC
Q 037951 429 LSGVIPSSLGNLERLAILEMFANELSGTIP 458 (627)
Q Consensus 429 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 458 (627)
+++..+..+..+++|+.|++++|++.+..|
T Consensus 383 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 383 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 654444445555666666666665554444
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.7e-38 Score=334.02 Aligned_cols=390 Identities=18% Similarity=0.210 Sum_probs=251.6
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCcccccc-CCccccCCCCCCeeeCCC
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGS-IPFEFVSLYKLKQLALPM 154 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~l~~ 154 (627)
+.++.++++++ .+|. +. ++|++|+|++|.+++..|..|+++++|++|++++|.+.+. .+..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-LP--AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-CC--TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-CC--CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 56788888876 5665 33 7889999999988877788888888888888888887633 356678888888888888
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC--ccCCCCCccEEEeeCccccccCCcc-ccCCCCCcEEEeecccCcc
Q 037951 155 NNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPD--SLGQLKELKTLGIGGNNLSGSIPPS-IYNLSFLVIFSVSENQMHG 231 (627)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~l~~n~l~~ 231 (627)
|.+++..|..++++++|++|++++|.+++..+. .+..+++|++|++++|.+.+..|.. +..+++|+.|++++|.+.+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 888776677788888888888888877753333 3666777777777777666554443 4555555555555555543
Q ss_pred CCChhhhhcCCCCceeccCCccccccCCccccCC--CCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCC
Q 037951 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNA--SKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDE 309 (627)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 309 (627)
..+.. +..+ .+++.+++++|.+.+..+..++
T Consensus 169 ~~~~~-------------------------l~~l~~~~L~~L~l~~n~l~~~~~~~~~---------------------- 201 (455)
T 3v47_A 169 ICEED-------------------------LLNFQGKHFTLLRLSSITLQDMNEYWLG---------------------- 201 (455)
T ss_dssp CCTTT-------------------------SGGGTTCEEEEEECTTCBCTTCSTTCTT----------------------
T ss_pred cChhh-------------------------hhccccccccccccccCcccccchhhcc----------------------
Confidence 33322 2222 3444444444443332221110
Q ss_pred ccccccCCCCCcccEEEccCcccccccchhHHhcc--ccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccch
Q 037951 310 MGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLS--SQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPK 387 (627)
Q Consensus 310 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 387 (627)
+.....+..+++|++|++++|.+++..|..+.... .+++.|++++|...+... ..+.+....+.
T Consensus 202 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~ 267 (455)
T 3v47_A 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNF 267 (455)
T ss_dssp HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTT
T ss_pred ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCccc
Confidence 01112344567888888888888877777766541 367777777765543211 11111111111
Q ss_pred hhc--CCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccc
Q 037951 388 EMG--KLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNIS 465 (627)
Q Consensus 388 ~~~--~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 465 (627)
.+. ..++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L---------------------- 325 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHL---------------------- 325 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC----------------------
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccC----------------------
Confidence 111 12455555555555555555555555555555555555554444444444444
Q ss_pred cCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEEC
Q 037951 466 SLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDL 545 (627)
Q Consensus 466 ~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~l 545 (627)
++|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 326 ---~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 326 ---LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp ---CEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ---CEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEc
Confidence 45555555555455566778888999999999998777888899999999999999999877777888999999999
Q ss_pred CCCcCccccc
Q 037951 546 SRNNFFGQIP 555 (627)
Q Consensus 546 s~n~l~~~~p 555 (627)
++|++.+..|
T Consensus 403 ~~N~l~~~~~ 412 (455)
T 3v47_A 403 HTNPWDCSCP 412 (455)
T ss_dssp CSSCBCCCTT
T ss_pred cCCCcccCCC
Confidence 9999988777
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.6e-39 Score=335.84 Aligned_cols=416 Identities=22% Similarity=0.310 Sum_probs=202.6
Q ss_pred CCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCee
Q 037951 71 NLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQL 150 (627)
Q Consensus 71 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 150 (627)
+.++|++|++++|.+ +.+|.+|+++++|++|++++|.+.+.+|..++++.+|+.+++++|.. .++++|
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 356777888888877 57777788888888888888777777777777777664444443321 234555
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCc
Q 037951 151 ALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH 230 (627)
Q Consensus 151 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 230 (627)
++++|.+++ +|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++ ++.. .++|+.|++++|.+.
T Consensus 77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp ECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred EecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence 555555553 2221 2455555555555553 3322 2455555555555442 1110 023444444444333
Q ss_pred cCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCc
Q 037951 231 GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEM 310 (627)
Q Consensus 231 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 310 (627)
+ +| .+..+++|++|++++|.+.+ +|.. .++|++|++++|.+++++
T Consensus 145 -------------------------~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~---- 189 (454)
T 1jl5_A 145 -------------------------K-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP---- 189 (454)
T ss_dssp -------------------------S-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC----
T ss_pred -------------------------C-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc----
Confidence 2 22 23444455555555554443 2211 135555555555554421
Q ss_pred cccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhc
Q 037951 311 GFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMG 390 (627)
Q Consensus 311 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 390 (627)
.+..+++|++|++++|.+++ +|.. .++|++|++++|.+. .+|. +..+++|+.|++++|++++ +|..
T Consensus 190 ----~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~-- 255 (454)
T 1jl5_A 190 ----ELQNLPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL-- 255 (454)
T ss_dssp ----CCTTCTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC--
T ss_pred ----cccCCCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc--
Confidence 24555666666666666553 2221 126777777777776 4553 6677777778877777764 3432
Q ss_pred CCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCcccccc-ccCcc
Q 037951 391 KLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNI-SSLSV 469 (627)
Q Consensus 391 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~-~~ll~ 469 (627)
+++|+.|++++|++.+ +|.. +++|++|++++|.+++. +. ..++|+.|++++|.+.+ ++ .. .++ +
T Consensus 256 -~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L-~ 320 (454)
T 1jl5_A 256 -PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-LC----DLPPSL-E 320 (454)
T ss_dssp -CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-EC----CCCTTC-C
T ss_pred -ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-cc----CCcCcC-C
Confidence 3677888888887774 4432 36788888888887752 21 12578888888887763 22 22 244 7
Q ss_pred EEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccc--cCChhccCCCCCCEEECCC
Q 037951 470 SLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNG--FIPSFFRTSRGIRKVDLSR 547 (627)
Q Consensus 470 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~--~~~~~l~~l~~L~~L~ls~ 547 (627)
+|++++|++.+ +|.. +++|++|++++|+++ .+|. .+++|++|++++|.+++ .+|..+. .| +.
T Consensus 321 ~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~------~L--~~ 384 (454)
T 1jl5_A 321 ELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVE------DL--RM 384 (454)
T ss_dssp EEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC------EE--EC
T ss_pred EEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHH------hh--hh
Confidence 88888888875 4443 478888888888887 5665 46788888888888887 4555443 22 34
Q ss_pred CcCccccchhcccCcCCeeeCcCCcccc--cCCCCCccCCCCccccccCCCC
Q 037951 548 NNFFGQIPIFLEALSLEYLNLSFNDFEG--RLPTRGIFANASAISVGGCNRL 597 (627)
Q Consensus 548 n~l~~~~p~~~~~~~L~~L~ls~n~l~~--~~p~~~~~~~l~~l~~~~n~~l 597 (627)
|.+.+.+|... ..|++|++++|++++ .+| .+++.+.+.+|...
T Consensus 385 n~~~~~i~~~~--~~L~~L~ls~N~l~~~~~iP-----~sl~~L~~~~~~~~ 429 (454)
T 1jl5_A 385 NSHLAEVPELP--QNLKQLHVETNPLREFPDIP-----ESVEDLRMNSERVV 429 (454)
T ss_dssp CC--------------------------------------------------
T ss_pred ccccccccccc--CcCCEEECCCCcCCccccch-----hhHhheeCcCcccC
Confidence 56666666531 238888888888876 343 45667777776533
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=7.6e-38 Score=325.82 Aligned_cols=411 Identities=20% Similarity=0.240 Sum_probs=260.6
Q ss_pred CCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEE
Q 037951 95 RLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVV 174 (627)
Q Consensus 95 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 174 (627)
+.++|++|++++|.+ +.+|.+++++++|++|++++|.+.+..|..++++.+|+.+++.+|.. .++++|
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L 76 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL 76 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence 357888888888888 57888888888888888888888878888888888887777766642 457889
Q ss_pred ECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccc
Q 037951 175 SLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFF 254 (627)
Q Consensus 175 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~ 254 (627)
++++|.+++ +|.. .++|++|++++|.+++ +|.. .++|+.|++++|.+.+
T Consensus 77 ~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~----------------------- 125 (454)
T 1jl5_A 77 ELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA----------------------- 125 (454)
T ss_dssp ECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-----------------------
T ss_pred EecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-----------------------
Confidence 999988885 3432 3678888888887774 4532 2556666666665542
Q ss_pred cccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCccccc
Q 037951 255 SGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRG 334 (627)
Q Consensus 255 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 334 (627)
++.. .++|++|++++|.+.+ +| .++.+++|++|++++|.+++++. . ..+|++|++++|++++
T Consensus 126 ---l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~-------~---~~~L~~L~L~~n~l~~ 187 (454)
T 1jl5_A 126 ---LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPD-------L---PPSLEFIAAGNNQLEE 187 (454)
T ss_dssp ---CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCC-------C---CTTCCEEECCSSCCSS
T ss_pred ---ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCC-------C---cccccEEECcCCcCCc
Confidence 1111 1689999999999887 55 58999999999999999887432 1 2489999999999985
Q ss_pred ccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhh
Q 037951 335 ALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLG 414 (627)
Q Consensus 335 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 414 (627)
+| .+..+. +|++|++++|.+++ +|.. .++|+.|++++|.++ .+|. +..+++|+.|++++|++++ +|..
T Consensus 188 -l~-~~~~l~-~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~-- 255 (454)
T 1jl5_A 188 -LP-ELQNLP-FLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL-- 255 (454)
T ss_dssp -CC-CCTTCT-TCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC--
T ss_pred -Cc-cccCCC-CCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc--
Confidence 55 466666 89999999999885 4432 258999999999988 5664 8889999999999999884 4432
Q ss_pred CCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCC-CCCC
Q 037951 415 NLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNL-KALR 493 (627)
Q Consensus 415 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l-~~L~ 493 (627)
+++|++|++++|.+++ +|.. +++|+.|++++|.+.+ +|.. ...+ ++|++++|++.+. ..+ ++|+
T Consensus 256 -~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L-~~L~l~~N~l~~i-----~~~~~~L~ 320 (454)
T 1jl5_A 256 -PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PPNL-YYLNASSNEIRSL-----CDLPPSLE 320 (454)
T ss_dssp -CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CTTC-CEEECCSSCCSEE-----CCCCTTCC
T ss_pred -ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CCcC-CEEECcCCcCCcc-----cCCcCcCC
Confidence 4789999999999885 4543 4789999999998875 2211 1345 8899999988752 223 5899
Q ss_pred EEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCcc--ccchhcccCcCCeeeCcCC
Q 037951 494 CFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFG--QIPIFLEALSLEYLNLSFN 571 (627)
Q Consensus 494 ~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~--~~p~~~~~~~L~~L~ls~n 571 (627)
+|++++|++++ +|.. +++|++|++++|.++. +|. .+++|++|++++|++.+ .+|..+. +++.|
T Consensus 321 ~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~-------~L~~n 385 (454)
T 1jl5_A 321 ELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVE-------DLRMN 385 (454)
T ss_dssp EEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCC-------EEECC
T ss_pred EEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHH-------hhhhc
Confidence 99999999984 6654 5789999999999885 555 46889999999999987 5665433 23457
Q ss_pred cccccCCCCCccCCCCccccccCCCCc-ccCC----CCCCCCCC
Q 037951 572 DFEGRLPTRGIFANASAISVGGCNRLC-GGIH----ELQLPKCP 610 (627)
Q Consensus 572 ~l~~~~p~~~~~~~l~~l~~~~n~~l~-~~~~----~l~i~~c~ 610 (627)
.+.+.+|.. +++|+.+++.+|+... +.+| .|.+..|.
T Consensus 386 ~~~~~i~~~--~~~L~~L~ls~N~l~~~~~iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 386 SHLAEVPEL--PQNLKQLHVETNPLREFPDIPESVEDLRMNSER 427 (454)
T ss_dssp C-------------------------------------------
T ss_pred ccccccccc--cCcCCEEECCCCcCCccccchhhHhheeCcCcc
Confidence 777888763 6899999999997442 2444 35555553
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.3e-37 Score=308.89 Aligned_cols=297 Identities=26% Similarity=0.451 Sum_probs=262.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCC--cccceeecCCCCcceecccccCCCCCCCEEECCCCCCcc--
Q 037951 12 AAFEEGDLAALQAFKSMISHDPQGILNSWNDSRHFCE--WEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQG-- 87 (627)
Q Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~~~~c~--~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~-- 87 (627)
+.|.++|++||.+||.++. +|. .+.+|....++|. |.||.|+-.. ...++++|+++++.+.+
T Consensus 1 ~~c~~~~~~aL~~~k~~~~-~~~-~l~~W~~~~~~C~~~w~gv~C~~~~------------~~~~l~~L~L~~~~l~~~~ 66 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLG-NPT-TLSSWLPTTDCCNRTWLGVLCDTDT------------QTYRVNNLDLSGLNLPKPY 66 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTT-CCG-GGTTCCTTSCTTTTCSTTEEECCSS------------SCCCEEEEEEECCCCSSCE
T ss_pred CCCCHHHHHHHHHHHHhcC-Ccc-cccCCCCCCCCCcCCCcceEeCCCC------------CCceEEEEECCCCCccCCc
Confidence 3588999999999999995 665 7899988788998 9999995321 12478999999999998
Q ss_pred cCCcccCCCCCCCEEeCCC-CcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCC
Q 037951 88 EIPLEFGRLRRLETLLLSD-NSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLG 166 (627)
Q Consensus 88 ~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 166 (627)
.+|..|.++++|++|++++ |.+.+.+|..|+++++|++|++++|.+++..|..+.++++|++|++++|.+++.+|..+.
T Consensus 67 ~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 146 (313)
T 1ogq_A 67 PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146 (313)
T ss_dssp ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG
T ss_pred ccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh
Confidence 8899999999999999995 889989999999999999999999999988999999999999999999999988999999
Q ss_pred CCCCCCEEECCCCCCCCCCCCccCCCC-CccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCc
Q 037951 167 NLTSLEVVSLAGNPFGGNIPDSLGQLK-ELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLK 245 (627)
Q Consensus 167 ~l~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 245 (627)
++++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |+.|++++|.+.+..|..+.. +++|+
T Consensus 147 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~-l~~L~ 224 (313)
T 1ogq_A 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS-DKNTQ 224 (313)
T ss_dssp GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT-TSCCS
T ss_pred cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc-CCCCC
Confidence 999999999999999988899999997 999999999999989999999887 999999999999877766655 89999
Q ss_pred eeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEE
Q 037951 246 LFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVL 325 (627)
Q Consensus 246 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L 325 (627)
.|++++|.+++..+. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+++. ++. ...+++|+.+
T Consensus 225 ~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~------ip~-~~~l~~L~~l 296 (313)
T 1ogq_A 225 KIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE------IPQ-GGNLQRFDVS 296 (313)
T ss_dssp EEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE------CCC-STTGGGSCGG
T ss_pred EEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc------CCC-CccccccChH
Confidence 999999999877665 77889999999999999988999999999999999999998862 233 3678899999
Q ss_pred EccCccc
Q 037951 326 SLGGNQF 332 (627)
Q Consensus 326 ~l~~n~~ 332 (627)
++++|..
T Consensus 297 ~l~~N~~ 303 (313)
T 1ogq_A 297 AYANNKC 303 (313)
T ss_dssp GTCSSSE
T ss_pred HhcCCCC
Confidence 9999973
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.1e-35 Score=309.92 Aligned_cols=360 Identities=19% Similarity=0.220 Sum_probs=263.1
Q ss_pred ccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCC
Q 037951 66 SPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLY 145 (627)
Q Consensus 66 ~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~ 145 (627)
+..+.++++|++|++++|.+++ +| .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++.++
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~ 106 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLT 106 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCT
T ss_pred ccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCC
Confidence 3456778899999999999985 45 689999999999999999864 4 88999999999999999854 3 88999
Q ss_pred CCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEee
Q 037951 146 KLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVS 225 (627)
Q Consensus 146 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 225 (627)
+|++|++++|.+++ ++ ++++++|++|++++|.+++. .+..+++|++|++++|...+.+ .+..+++|+.|+++
T Consensus 107 ~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred cCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 99999999999986 33 88999999999999999864 3788899999999999655454 47788999999999
Q ss_pred cccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCC
Q 037951 226 ENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSG 305 (627)
Q Consensus 226 ~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 305 (627)
+|.+++ +| + ..+++|+.|++++|.+++. .+..+++|+.|++++|++.+ +| ++.+++|++|++++|.+++.
T Consensus 179 ~n~l~~-l~--l-~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 179 FNKITE-LD--V-SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp SSCCCC-CC--C-TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC
T ss_pred CCccce-ec--c-ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCc
Confidence 998885 44 2 2377888888888887764 36677888888888888776 33 67777888888888877763
Q ss_pred CCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCcccccc
Q 037951 306 ESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSI 385 (627)
Q Consensus 306 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 385 (627)
+ +..+++|+.|+++++ +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+
T Consensus 249 ~---------~~~l~~L~~L~l~~n---------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 249 D---------VSTLSKLTTLHCIQT---------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp C---------CTTCTTCCEEECTTC---------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEE
T ss_pred C---------HHHCCCCCEEeccCC---------------CCCEEECCCCccCCccc--ccccccCCEEECCCCccccee
Confidence 2 345667777777654 45666777777665555 456677777777777766555
Q ss_pred chhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccc
Q 037951 386 PKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNIS 465 (627)
Q Consensus 386 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 465 (627)
|. ..++|+.|++++| ++|++|++++|++++. + +..+++|+.|++++|++.+ + +
T Consensus 303 ~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-l-------~ 355 (457)
T 3bz5_A 303 DC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-F-------S 355 (457)
T ss_dssp EC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB-C-------T
T ss_pred cc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC-c-------c
Confidence 53 3345555555443 5677777777777753 2 6677777777777777763 1 2
Q ss_pred cCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccc
Q 037951 466 SLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSEL 510 (627)
Q Consensus 466 ~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 510 (627)
.+ ..|++++|.+.|. .++..|+.+++++|+++|.+|..+
T Consensus 356 ~L-~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 356 SV-GKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp TG-GGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred cc-ccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 23 4455666666553 233445556666666666666543
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.7e-35 Score=306.20 Aligned_cols=346 Identities=26% Similarity=0.386 Sum_probs=199.4
Q ss_pred CCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEE
Q 037951 95 RLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVV 174 (627)
Q Consensus 95 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 174 (627)
.+++++.|+++++.+. .+| .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 4678899999998887 455 47888899999999998885443 8888888999988888885544 8888888888
Q ss_pred ECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccc
Q 037951 175 SLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFF 254 (627)
Q Consensus 175 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~ 254 (627)
++++|.+.+.. . +..+++|++|++++|.+.+ ++ .+..+++|+.|++++ .+.+
T Consensus 118 ~L~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~----------------------- 169 (466)
T 1o6v_A 118 TLFNNQITDID-P-LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTD----------------------- 169 (466)
T ss_dssp ECCSSCCCCCG-G-GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCC-----------------------
T ss_pred ECCCCCCCCCh-H-HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccC-----------------------
Confidence 88888887542 2 7778888888888887763 22 366666666666542 2210
Q ss_pred cccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCccccc
Q 037951 255 SGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRG 334 (627)
Q Consensus 255 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 334 (627)
. ..+..+++|+.|++++|.+.+.. .+..+++|++|++++|.+.+.. .+..++
T Consensus 170 ---~-~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~--------~~~~l~-------------- 221 (466)
T 1o6v_A 170 ---L-KPLANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDIT--------PLGILT-------------- 221 (466)
T ss_dssp ---C-GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCG--------GGGGCT--------------
T ss_pred ---c-hhhccCCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCcccccc--------cccccC--------------
Confidence 0 01344555555555555543321 1344444444444444443311 122233
Q ss_pred ccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhh
Q 037951 335 ALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLG 414 (627)
Q Consensus 335 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 414 (627)
+|+.|++++|.+.+. ..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+..+ +.
T Consensus 222 -----------~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~ 284 (466)
T 1o6v_A 222 -----------NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 284 (466)
T ss_dssp -----------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GT
T ss_pred -----------CCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--cc
Confidence 444444444444321 134455555555555555553322 4555556666666655553322 45
Q ss_pred CCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCE
Q 037951 415 NLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRC 494 (627)
Q Consensus 415 ~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~ 494 (627)
.+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..| +..++.+ ++|++++|.+.+. ..+.++++|++
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L-~~L~l~~n~l~~~--~~l~~l~~L~~ 357 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKL-QRLFFYNNKVSDV--SSLANLTNINW 357 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTC-CEEECCSSCCCCC--GGGTTCTTCCE
T ss_pred CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccC-CEeECCCCccCCc--hhhccCCCCCE
Confidence 55556666666655554322 4555555555555555543322 3344444 4555555544432 23455555555
Q ss_pred EEccCCcccccCCccccCCCCCCEEECCCCcccc
Q 037951 495 FDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNG 528 (627)
Q Consensus 495 L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~ 528 (627)
|++++|++++..| +..+++|+.|++++|.+++
T Consensus 358 L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 358 LSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred EeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 5555555554433 4555555555555555554
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-35 Score=313.25 Aligned_cols=347 Identities=19% Similarity=0.164 Sum_probs=202.7
Q ss_pred cEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccC
Q 037951 220 VIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEY 299 (627)
Q Consensus 220 ~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 299 (627)
+.++.+++.+. .+|..+ .++++.|++++|.+++..+..+..+++|++|++++|.+.+..+..|.++++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 35566665555 444433 34566666666666655555566666666666666666555555566666666666666
Q ss_pred ccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCC
Q 037951 300 NNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEEN 379 (627)
Q Consensus 300 n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 379 (627)
|.++.+.. ..+.++++|++|++++|++. +..+..+..+++|+.|++++|
T Consensus 90 n~l~~~~~------~~~~~l~~L~~L~Ls~n~i~-------------------------~~~~~~~~~l~~L~~L~l~~n 138 (477)
T 2id5_A 90 NRLKLIPL------GVFTGLSNLTKLDISENKIV-------------------------ILLDYMFQDLYNLKSLEVGDN 138 (477)
T ss_dssp SCCCSCCT------TSSTTCTTCCEEECTTSCCC-------------------------EECTTTTTTCTTCCEEEECCT
T ss_pred CcCCccCc------ccccCCCCCCEEECCCCccc-------------------------cCChhHccccccCCEEECCCC
Confidence 55554322 13444555555555555554 444444555555555555555
Q ss_pred ccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCc
Q 037951 380 QFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPG 459 (627)
Q Consensus 380 ~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 459 (627)
.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.
T Consensus 139 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 139 DLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp TCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred ccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence 55544455555555556666665555544444455566666666666665555555555666666666666655555555
Q ss_pred cccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCC
Q 037951 460 DIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRG 539 (627)
Q Consensus 460 ~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~ 539 (627)
......++ ++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..|..+++
T Consensus 219 ~~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 297 (477)
T 2id5_A 219 NCLYGLNL-TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297 (477)
T ss_dssp TTTTTCCC-SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT
T ss_pred ccccCccc-cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc
Confidence 55544555 66666666666433345666677777777777776555566667777777777777777666666777777
Q ss_pred CCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCCCccCCCCccccccCCCCcccCC
Q 037951 540 IRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGIH 602 (627)
Q Consensus 540 L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~~~~~~l~~l~~~~n~~l~~~~~ 602 (627)
|+.|++++|.+.+..+..+..++ |++|++++|++....+....+.....+.+.++...|+.++
T Consensus 298 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred CCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 77777777777655555555555 7777777777665433222233334455566666665543
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.4e-35 Score=305.31 Aligned_cols=362 Identities=19% Similarity=0.169 Sum_probs=208.1
Q ss_pred cccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCC
Q 037951 86 QGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFL 165 (627)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 165 (627)
.+..+..++++++|++|++++|.+++ +| .++.+++|++|++++|++++. + ++.+++|++|++++|.+++. + +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~ 102 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--V 102 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred CcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--c
Confidence 33445567888999999999999985 45 688999999999999998853 3 88889999999999998864 3 7
Q ss_pred CCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCc
Q 037951 166 GNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLK 245 (627)
Q Consensus 166 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 245 (627)
+++++|++|++++|.+++. + +..+++|++|++++|.+++. .++.+++|+.|++++|...+.++
T Consensus 103 ~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~----------- 165 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD----------- 165 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC-----------
T ss_pred CCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc-----------
Confidence 8889999999999988863 3 78888888888888888753 26677777777777775443331
Q ss_pred eeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEE
Q 037951 246 LFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVL 325 (627)
Q Consensus 246 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L 325 (627)
+..+++|+.|++++|.+.+. + +..+++|+.|++++|.+++. .+..+++|+.|
T Consensus 166 ----------------~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---------~l~~l~~L~~L 217 (457)
T 3bz5_A 166 ----------------VTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---------DLNQNIQLTFL 217 (457)
T ss_dssp ----------------CTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---------CCTTCTTCSEE
T ss_pred ----------------cccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---------ccccCCCCCEE
Confidence 23444555555555554442 1 44555555555555555442 13344555555
Q ss_pred EccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcc
Q 037951 326 SLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHF 405 (627)
Q Consensus 326 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~ 405 (627)
++++|++++ +| +..++ +|+.|++++|++++.. +..+++|+.|++++| +|+.|++++|.+
T Consensus 218 ~Ls~N~l~~-ip--~~~l~-~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~ 276 (457)
T 3bz5_A 218 DCSSNKLTE-ID--VTPLT-QLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQ 276 (457)
T ss_dssp ECCSSCCSC-CC--CTTCT-TCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTT
T ss_pred ECcCCcccc-cC--ccccC-CCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCcc
Confidence 555555553 23 22332 4555555555554321 233444555544432 234445555554
Q ss_pred cccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCcc
Q 037951 406 SGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPR 485 (627)
Q Consensus 406 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~ 485 (627)
.+.+| ++.+++|+.|++++|...+.+|. ..++|+.|++++| +.+ ++|++++|++.+. +
T Consensus 277 ~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L-~~L~L~~N~l~~l-~-- 334 (457)
T 3bz5_A 277 LIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKL-VYLYLNNTELTEL-D-- 334 (457)
T ss_dssp CCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTC-CEEECTTCCCSCC-C--
T ss_pred CCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccC-CEEECCCCccccc-c--
Confidence 44433 23455555555555554444432 2233333333332 223 4455555555442 1
Q ss_pred ccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccch
Q 037951 486 IGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPI 556 (627)
Q Consensus 486 l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~ 556 (627)
+.++++|+.|++++|++++ ++.|+.|++++|.+.+. ..+..|+.+++++|.++|.+|.
T Consensus 335 l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 335 VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 4455555555555555542 12334444455544443 1223344445555555555443
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.6e-34 Score=302.21 Aligned_cols=212 Identities=25% Similarity=0.335 Sum_probs=152.1
Q ss_pred CCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCee
Q 037951 71 NLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQL 150 (627)
Q Consensus 71 ~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 150 (627)
.+++++.|+++++.+. .+| .+..+++|++|++++|.+++. +. +.++++|++|++++|.+.+..+ +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred HhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 4678999999999997 455 488899999999999999954 44 9999999999999999985544 9999999999
Q ss_pred eCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCc
Q 037951 151 ALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH 230 (627)
Q Consensus 151 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 230 (627)
++++|.+++..+ +.++++|++|++++|.+.+. + .+..+++|++|+++ +.+.+. ..+..+++|+.|++++|.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCcCC
Confidence 999999986533 89999999999999999853 3 58999999999997 444422 34889999999999999876
Q ss_pred cCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccC
Q 037951 231 GSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNL 302 (627)
Q Consensus 231 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l 302 (627)
+. +. + ..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+
T Consensus 191 ~~-~~-l-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 255 (466)
T 1o6v_A 191 DI-SV-L-AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 255 (466)
T ss_dssp CC-GG-G-GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred CC-hh-h-ccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCcc
Confidence 42 21 2 225555555555555443322 33444444444444444332 1233344444444444443
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-34 Score=295.49 Aligned_cols=344 Identities=19% Similarity=0.184 Sum_probs=195.4
Q ss_pred CCCCCCCCCCCC-cccceeecCCCCccee-----cccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCc
Q 037951 37 LNSWNDSRHFCE-WEGITCDLRSKALSGL-----LSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLV 110 (627)
Q Consensus 37 ~~~w~~~~~~c~-~~~~~c~l~~~~l~~~-----~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~ 110 (627)
+++|.....||. |.+..|......+... ....-..++++++|+++++.++...+..|..+++|++|++++|.++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~ 82 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE 82 (390)
T ss_dssp ----CCEECBCC------EEEESCEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC
T ss_pred cCCCCCccceehhhhhhccceeeeeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc
Confidence 467776655654 5545553333222211 1111223578888888888887544455677888888888888888
Q ss_pred ccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccC
Q 037951 111 GKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLG 190 (627)
Q Consensus 111 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~ 190 (627)
+..+..|.++++|++|++++|.+++..|..++++++|++|++++|.++...+..+.++++|++|++++|.+.+..+..+.
T Consensus 83 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 162 (390)
T 3o6n_A 83 EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162 (390)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS
T ss_pred ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhcc
Confidence 76667788888888888888888877777778888888888888888754444567788888888888887766666777
Q ss_pred CCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcE
Q 037951 191 QLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEY 270 (627)
Q Consensus 191 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 270 (627)
.+++|++|++++|.+++. .+..+++|+.+++++|.+. + +...++|+.
T Consensus 163 ~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~-------------------------~-----~~~~~~L~~ 209 (390)
T 3o6n_A 163 ATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-------------------------T-----LAIPIAVEE 209 (390)
T ss_dssp SCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCS-------------------------E-----EECCSSCSE
T ss_pred CCCCCCEEECCCCcCCcc---ccccccccceeeccccccc-------------------------c-----cCCCCcceE
Confidence 777777777777776632 2334455555555554433 1 112234555
Q ss_pred eecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEE
Q 037951 271 VEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQIL 350 (627)
Q Consensus 271 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L 350 (627)
+++++|.+..... ...++|+.|++++|.+++. ..+..+++|++|++++|.+++..|.
T Consensus 210 L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--------~~l~~l~~L~~L~Ls~n~l~~~~~~------------ 266 (390)
T 3o6n_A 210 LDASHNSINVVRG---PVNVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKIMYH------------ 266 (390)
T ss_dssp EECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEEESG------------
T ss_pred EECCCCeeeeccc---cccccccEEECCCCCCccc--------HHHcCCCCccEEECCCCcCCCcChh------------
Confidence 6665555543322 1234556666665555441 2344445555555555555444444
Q ss_pred EeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccc
Q 037951 351 VLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLS 430 (627)
Q Consensus 351 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 430 (627)
.+..+++|+.|++++|++++ ++..+..+++|+.|++++|++. .+|..+..+++|++|++++|+++
T Consensus 267 -------------~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 267 -------------PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp -------------GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred -------------HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence 44444445555555554442 2333344455555555555554 33334444555555555555554
Q ss_pred cccChhhcCCCCCCEEECcCCcCc
Q 037951 431 GVIPSSLGNLERLAILEMFANELS 454 (627)
Q Consensus 431 ~~~~~~l~~l~~L~~L~l~~n~l~ 454 (627)
.. + +..+++|+.|++++|++.
T Consensus 332 ~~-~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 332 TL-K--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CC-C--CCTTCCCSEEECCSSCEE
T ss_pred ee-C--chhhccCCEEEcCCCCcc
Confidence 32 1 344455555555555554
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.1e-34 Score=302.17 Aligned_cols=302 Identities=20% Similarity=0.202 Sum_probs=169.3
Q ss_pred CCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeC
Q 037951 73 SFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLAL 152 (627)
Q Consensus 73 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l 152 (627)
+++++|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|+++...+..|.++++|++|++
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 111 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI 111 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEEC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEEC
Confidence 46667777777666555666666667777777766666666666666666666666666666444445566666666666
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccC
Q 037951 153 PMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGS 232 (627)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 232 (627)
++|.+.+..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 112 s~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-- 189 (477)
T 2id5_A 112 SENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-- 189 (477)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC--
T ss_pred CCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc--
Confidence 666666555555666666666666666665555555555555555555555555333333444444444444444443
Q ss_pred CChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccc
Q 037951 233 LPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGF 312 (627)
Q Consensus 233 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 312 (627)
+..+..+..+++|+.|++++|...+..+.......
T Consensus 190 -----------------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~---------------------- 224 (477)
T 2id5_A 190 -----------------------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL---------------------- 224 (477)
T ss_dssp -----------------------EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC----------------------
T ss_pred -----------------------EeChhhcccCcccceeeCCCCccccccCcccccCc----------------------
Confidence 33333444555555555555544433333322223
Q ss_pred cccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCC
Q 037951 313 MNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKL 392 (627)
Q Consensus 313 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 392 (627)
+|+.|++++|.+++..+..+..+. +|+.|++++|.+++..+..+..+++|+.|++++|++++..+..+..+
T Consensus 225 --------~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (477)
T 2id5_A 225 --------NLTSLSITHCNLTAVPYLAVRHLV-YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295 (477)
T ss_dssp --------CCSEEEEESSCCCSCCHHHHTTCT-TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred --------cccEEECcCCcccccCHHHhcCcc-ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCc
Confidence 444444444444422222333333 45555555555554444455556666666666666665555556666
Q ss_pred CCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccc
Q 037951 393 LNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLS 430 (627)
Q Consensus 393 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 430 (627)
++|+.|++++|++++..+..|..+++|++|++++|++.
T Consensus 296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 66666666666666544445555666666666666654
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.5e-34 Score=308.77 Aligned_cols=350 Identities=18% Similarity=0.167 Sum_probs=189.5
Q ss_pred CCCCCCCCCCCCCCCCCC-cccceeecCCCCccee---cc--cccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeC
Q 037951 31 HDPQGILNSWNDSRHFCE-WEGITCDLRSKALSGL---LS--PQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLL 104 (627)
Q Consensus 31 ~~~~~~~~~w~~~~~~c~-~~~~~c~l~~~~l~~~---~~--~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L 104 (627)
++.+..+.+|.....||. |.++.|.+....+... .. ..-..+.+++.++++++.+....+..|..+++|++|+|
T Consensus 3 g~~~~~l~~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L 82 (597)
T 3oja_B 3 GQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 82 (597)
T ss_dssp --------CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEEC
T ss_pred CcccccccCCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEEC
Confidence 344566788887666654 3333342222222111 11 11123567788888888777555555677788888888
Q ss_pred CCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC
Q 037951 105 SDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGN 184 (627)
Q Consensus 105 ~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 184 (627)
++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..|+++++|++|++++|.+.+.
T Consensus 83 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162 (597)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence 88888776667778888888888888887776677777777788888877777755555567777777777777777766
Q ss_pred CCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccC
Q 037951 185 IPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSN 264 (627)
Q Consensus 185 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 264 (627)
.|..+..+++|++|++++|.+++. .+..+++|+.+++++|.+. + +..
T Consensus 163 ~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~-------------------------~-----l~~ 209 (597)
T 3oja_B 163 EDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS-------------------------T-----LAI 209 (597)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCS-------------------------E-----EEC
T ss_pred ChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccc-------------------------c-----ccC
Confidence 666677777777777777766632 1333444555554444433 1 122
Q ss_pred CCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhcc
Q 037951 265 ASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLS 344 (627)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 344 (627)
.++|+.|++++|.+....+.. .++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..+..+.
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--------~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 278 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--------AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ 278 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--------GGGGGCTTCSEEECCSSCCCEEESGGGTTCS
T ss_pred CchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--------hhhccCCCCCEEECCCCccCCCCHHHhcCcc
Confidence 334555666555554332221 24555555555555441 2344445555555555555544444444443
Q ss_pred ccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEc
Q 037951 345 SQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424 (627)
Q Consensus 345 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 424 (627)
+|+.|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+.+. + +..+++|+.|++
T Consensus 279 -~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l 352 (597)
T 3oja_B 279 -RLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL 352 (597)
T ss_dssp -SCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred -CCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEe
Confidence 44444444444442 2333333444444444444444 2333344444444444444444322 1 233344444444
Q ss_pred cCCccc
Q 037951 425 GDNNLS 430 (627)
Q Consensus 425 ~~n~~~ 430 (627)
++|++.
T Consensus 353 ~~N~~~ 358 (597)
T 3oja_B 353 SHNDWD 358 (597)
T ss_dssp CSSCEE
T ss_pred eCCCCC
Confidence 444443
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.7e-34 Score=283.97 Aligned_cols=253 Identities=30% Similarity=0.454 Sum_probs=218.5
Q ss_pred cccEEEeecccccc--cCcccccCCCCCCEEeCCC-CccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEE
Q 037951 346 QLQILVLGTNQLYG--SIPSGIGNLVNLYSLQTEE-NQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEI 422 (627)
Q Consensus 346 ~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 422 (627)
+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 57777777777776 6777777788888888884 77777778788888888888888888887788888888888888
Q ss_pred EccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccc-cCccEEEccCCccccCCCccccCCCCCCEEEccCCc
Q 037951 423 FLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNIS-SLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNND 501 (627)
Q Consensus 423 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~-~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 501 (627)
++++|.+++..|..+..+++|++|++++|.+.+.+|..+..+. .+ ++|++++|++.+..|..+..++ |++|++++|.
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L-~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF-TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC-CEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC-cEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 8888888877888888888888888888888888888888887 55 8888999988888888888887 9999999999
Q ss_pred ccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCC
Q 037951 502 LSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTR 580 (627)
Q Consensus 502 l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~ 580 (627)
+++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+.+.+|..+..++ |++|++++|++++.+|..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 9988888999999999999999999877766 78899999999999999999999998888 999999999999999988
Q ss_pred CccCCCCccccccCCCCcccC
Q 037951 581 GIFANASAISVGGCNRLCGGI 601 (627)
Q Consensus 581 ~~~~~l~~l~~~~n~~l~~~~ 601 (627)
+.+++++.+++.+||.+||.+
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTT
T ss_pred ccccccChHHhcCCCCccCCC
Confidence 889999999999999999963
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.8e-32 Score=280.08 Aligned_cols=333 Identities=21% Similarity=0.215 Sum_probs=180.2
Q ss_pred CCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEE
Q 037951 216 LSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYL 295 (627)
Q Consensus 216 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 295 (627)
+++++.++++++.+. .+|......+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..++++++|++|
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 455666666666654 3344333335555555555555544444444445555555555554444444444444444444
Q ss_pred eccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEe
Q 037951 296 ILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQ 375 (627)
Q Consensus 296 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 375 (627)
++++|.++.++. ..+..++ +|++|++++|.+.+..+..+..+++|+.|+
T Consensus 123 ~L~~n~l~~l~~------~~~~~l~-------------------------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 171 (390)
T 3o6n_A 123 VLERNDLSSLPR------GIFHNTP-------------------------KLTTLSMSNNNLERIEDDTFQATTSLQNLQ 171 (390)
T ss_dssp ECCSSCCCCCCT------TTTTTCT-------------------------TCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred ECCCCccCcCCH------HHhcCCC-------------------------CCcEEECCCCccCccChhhccCCCCCCEEE
Confidence 444444443211 1123333 445555555544444444455555555555
Q ss_pred CCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcc
Q 037951 376 TEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSG 455 (627)
Q Consensus 376 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 455 (627)
+++|.+++. .+..+++|+.|++++|.+.+ +...++|++|++++|.+... +. ...++|+.|++++|.+.+
T Consensus 172 l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~ 240 (390)
T 3o6n_A 172 LSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTD 240 (390)
T ss_dssp CCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCC
T ss_pred CCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCcc
Confidence 555555532 13345556666666665542 12234566666666665533 22 123556666666666653
Q ss_pred cCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhcc
Q 037951 456 TIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFR 535 (627)
Q Consensus 456 ~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~ 535 (627)
. ..+..++.+ ++|++++|.+.+..|..+..+++|++|++++|+++ .+|..+..+++|++|++++|.++. +|..+.
T Consensus 241 ~--~~l~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~ 315 (390)
T 3o6n_A 241 T--AWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLLH-VERNQP 315 (390)
T ss_dssp C--GGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCCC-CGGGHH
T ss_pred c--HHHcCCCCc-cEEECCCCcCCCcChhHccccccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCccee-cCcccc
Confidence 2 345555555 66666666666555666666777777777777766 345555666777777777777663 444566
Q ss_pred CCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCCCccCCCCccccccCCCCccc
Q 037951 536 TSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGG 600 (627)
Q Consensus 536 ~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~~~~~~l~~l~~~~n~~l~~~ 600 (627)
.+++|+.|++++|.+... | +..++ |++|++++|++...-. ...+..+....+.+++..|+.
T Consensus 316 ~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 316 QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCSCCCT
T ss_pred ccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhH-HHHHHHHHhhcccccCceecc
Confidence 667777777777776633 2 33344 7777777777765321 223455555666666666654
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9.8e-32 Score=271.70 Aligned_cols=307 Identities=27% Similarity=0.371 Sum_probs=209.8
Q ss_pred cCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCC
Q 037951 69 IGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLK 148 (627)
Q Consensus 69 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~ 148 (627)
+..+++|++|+++++.+. .++ .+..+++|++|++++|.+++ ++. +.++++|++|++++|.++. + ..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~ 113 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLR 113 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred chhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCC
Confidence 446788999999999987 344 38889999999999999884 444 8899999999999998874 3 4688899999
Q ss_pred eeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeeccc
Q 037951 149 QLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQ 228 (627)
Q Consensus 149 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 228 (627)
+|++++|.+.+. +. +.++++|++|++++|...... ..+..+++|++|++++|.+.... . +..+++|+.|++++|.
T Consensus 114 ~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~-~~~l~~L~~L~l~~n~ 188 (347)
T 4fmz_A 114 ELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVT-P-IANLTDLYSLSLNYNQ 188 (347)
T ss_dssp EEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCG-G-GGGCTTCSEEECTTSC
T ss_pred EEECcCCcccCc-hh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCch-h-hccCCCCCEEEccCCc
Confidence 999999988854 33 888899999999998665333 44788888888888888876432 2 6677777777777777
Q ss_pred CccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCC
Q 037951 229 MHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESD 308 (627)
Q Consensus 229 l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 308 (627)
+.+. +. +..+++|+.+++++|.+.+..+ +..+++|++|++++|.++...
T Consensus 189 l~~~-~~--------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-- 237 (347)
T 4fmz_A 189 IEDI-SP--------------------------LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-- 237 (347)
T ss_dssp CCCC-GG--------------------------GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG--
T ss_pred cccc-cc--------------------------ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc--
Confidence 6532 21 2334444444444444433322 444455555555555544321
Q ss_pred CccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchh
Q 037951 309 EMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKE 388 (627)
Q Consensus 309 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 388 (627)
.+..+++|++|++++|.+++. ..+..++ +|++|++++|.+++. ..+..+++|+.|++++|.+++..+..
T Consensus 238 ------~~~~l~~L~~L~l~~n~l~~~--~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 238 ------PLANLSQLTWLEIGTNQISDI--NAVKDLT-KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp ------GGTTCTTCCEEECCSSCCCCC--GGGTTCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred ------chhcCCCCCEEECCCCccCCC--hhHhcCC-CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhH
Confidence 144455555555555555532 2233333 566666666666543 34667778888888888887777777
Q ss_pred hcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccc
Q 037951 389 MGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLS 430 (627)
Q Consensus 389 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 430 (627)
+..+++|+.|++++|.+++..| +..+++|++|++++|.++
T Consensus 307 l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 8888888888888888875544 677888888888888765
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-32 Score=295.90 Aligned_cols=321 Identities=20% Similarity=0.199 Sum_probs=191.8
Q ss_pred ccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHH
Q 037951 262 LSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIA 341 (627)
Q Consensus 262 l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 341 (627)
+..+++|+.|++++|.+.+..+..|+.+++|++|++++|.+++..+ ..+.++++|+.|++++|.+++..+..+.
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 144 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP------HVFQNVPLLTVLVLERNDLSSLPRGIFH 144 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH------HHHcCCCCCCEEEeeCCCCCCCCHHHhc
Confidence 3344444444444444444444444444444444444444444221 2334445555555555555432222233
Q ss_pred hccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCE
Q 037951 342 NLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYE 421 (627)
Q Consensus 342 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 421 (627)
.+. +|++|++++|.+++..|..+..+++|+.|++++|.+++.. +..+++|+.|++++|.+.+ +...++|+.
T Consensus 145 ~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~ 215 (597)
T 3oja_B 145 NTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEE 215 (597)
T ss_dssp TCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSE
T ss_pred cCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhhe
Confidence 333 5555555555555555555666666666666666665432 3445666666666666653 233456677
Q ss_pred EEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCc
Q 037951 422 IFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNND 501 (627)
Q Consensus 422 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 501 (627)
|++++|.+....+. ..++|+.|++++|.+.+ +..+..++.+ ++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 216 L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 289 (597)
T 3oja_B 216 LDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 289 (597)
T ss_dssp EECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECTTSC
T ss_pred eeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCC-CEEECCCCccCCCCHHHhcCccCCCEEECCCCC
Confidence 77777766533222 12567777777777664 3456666666 777777777777777777778888888888888
Q ss_pred ccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCC
Q 037951 502 LSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTR 580 (627)
Q Consensus 502 l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~ 580 (627)
++ .+|..+..+++|+.|+|++|.++ .+|..+..+++|+.|++++|.+.+. | +..++ |+.|++++|++.+..+ .
T Consensus 290 l~-~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~-~ 363 (597)
T 3oja_B 290 LV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSL-R 363 (597)
T ss_dssp CC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHH-H
T ss_pred CC-CCCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhH-H
Confidence 77 45666667788888888888877 4566677778888888888887743 2 33444 8888888888876532 2
Q ss_pred CccCCCCccccccCCCCcccCCCCCCCCC
Q 037951 581 GIFANASAISVGGCNRLCGGIHELQLPKC 609 (627)
Q Consensus 581 ~~~~~l~~l~~~~n~~l~~~~~~l~i~~c 609 (627)
..+..+....+.+++..|+..+.+....|
T Consensus 364 ~~~~~~~~~~~~~~~~~C~~~~~~~~~~c 392 (597)
T 3oja_B 364 ALFRNVARPAVDDADQHCKIDYQLEHGLC 392 (597)
T ss_dssp HHTTTCCTTTBCCCCCCCCTTCEEETTEE
T ss_pred HHHHHHhhhccccccccCCcchhccCCcc
Confidence 23556666667788878876554444444
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4e-31 Score=267.22 Aligned_cols=284 Identities=23% Similarity=0.348 Sum_probs=154.2
Q ss_pred ccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHH
Q 037951 262 LSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIA 341 (627)
Q Consensus 262 l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 341 (627)
+..+++|++|++++|.+.+..+ +..+++|++|++++|.++.. ..+..+++|++|++++|.+.+..+ +.
T Consensus 62 ~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--------~~~~~l~~L~~L~l~~n~i~~~~~--~~ 129 (347)
T 4fmz_A 62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--------SALQNLTNLRELYLNEDNISDISP--LA 129 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--------GGGTTCTTCSEEECTTSCCCCCGG--GT
T ss_pred hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--------hHHcCCCcCCEEECcCCcccCchh--hc
Confidence 4445555555555555544333 55556666666666555442 134555566666666665553222 33
Q ss_pred hccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCE
Q 037951 342 NLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYE 421 (627)
Q Consensus 342 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 421 (627)
.+. +|++|++++|.....++ .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+. +. +..+++|+.
T Consensus 130 ~l~-~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~ 203 (347)
T 4fmz_A 130 NLT-KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHY 203 (347)
T ss_dssp TCT-TCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCE
T ss_pred cCC-ceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCCccce
Confidence 333 55666665554433322 25556666666666665553322 55566666666666665532 22 555666666
Q ss_pred EEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCc
Q 037951 422 IFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNND 501 (627)
Q Consensus 422 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 501 (627)
|++++|.+++..+ +..+++|+.|++++|.+.+ ++. +..++.+ ++|++++|.+.+. ..+..+++|++|++++|.
T Consensus 204 L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~ 276 (347)
T 4fmz_A 204 FTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQL-TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQ 276 (347)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTC-CEEECCSSCCCCC--GGGTTCTTCCEEECCSSC
T ss_pred eecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCC-CEEECCCCccCCC--hhHhcCCCcCEEEccCCc
Confidence 6666666553322 5555666666666665552 222 4455555 5666666655532 345566666666666666
Q ss_pred ccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCccc
Q 037951 502 LSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFE 574 (627)
Q Consensus 502 l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~ 574 (627)
+++ + ..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..| +..++ |++|++++|+++
T Consensus 277 l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 277 ISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred cCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 653 2 245566666666666666666666666666666666666666665444 34444 666666666653
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.7e-34 Score=304.02 Aligned_cols=384 Identities=16% Similarity=0.148 Sum_probs=201.4
Q ss_pred CCCCEEECCCCCCCCCCCC-ccCCCCCccEEEeeCccccc----cCCccccCCCCCcEEEeecccCccCCChhhhhcCC-
Q 037951 169 TSLEVVSLAGNPFGGNIPD-SLGQLKELKTLGIGGNNLSG----SIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFP- 242 (627)
Q Consensus 169 ~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~- 242 (627)
++|++|+++++.++..... .+..+++|++|++++|.++. .++..+..+++|+.|++++|.+.+..+..+...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 3456666666666532222 24556677777777776653 23455666677777777777666544444444333
Q ss_pred ---CCceeccCCccccc----cCCccccCCCCCcEeecccccccccCccC-----cCCCCCcCEEeccCccCCCCCCCCc
Q 037951 243 ---NLKLFQTNENFFSG----SIPISLSNASKLEYVEIASNSFFGKLSVN-----FGGMKNLSYLILEYNNLGSGESDEM 310 (627)
Q Consensus 243 ---~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-----l~~l~~L~~L~l~~n~l~~~~~~~~ 310 (627)
+|++|++++|.+++ .++..+..+++|++|++++|.+.+..+.. ....++|++|++++|.++.....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-- 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE-- 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--
Confidence 46666666665552 33455555666666666666554332221 12234455555555554432111
Q ss_pred cccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccc----cc
Q 037951 311 GFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGS----IP 386 (627)
Q Consensus 311 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~----~~ 386 (627)
.++..+..+++|++|++++|.+++..+..+..... ...++|+.|++++|.+++. ++
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~--------------------~~~~~L~~L~L~~n~l~~~~~~~l~ 220 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLK--------------------DSPCQLEALKLESCGVTSDNCRDLC 220 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHH--------------------HSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHh--------------------cCCCCceEEEccCCCCcHHHHHHHH
Confidence 12223334455555555555544333322222100 0133455555555554432 23
Q ss_pred hhhcCCCCCcEeeccCCcccccC-----ChhhhCCCCCCEEEccCCccccc----cChhhcCCCCCCEEECcCCcCcccC
Q 037951 387 KEMGKLLNLQGLDFGGNHFSGEI-----PSTLGNLSSLYEIFLGDNNLSGV----IPSSLGNLERLAILEMFANELSGTI 457 (627)
Q Consensus 387 ~~~~~l~~L~~L~L~~n~~~~~~-----~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~~~~ 457 (627)
..+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence 44444555555555555544321 11122355555555555555532 3344445555666666555554322
Q ss_pred Ccccccc-----ccCccEEEccCCccccC----CCccccCCCCCCEEEccCCcccccCCccccC-----CCCCCEEECCC
Q 037951 458 PGDIFNI-----SSLSVSLDLAENHFVGS----IPPRIGNLKALRCFDVSNNDLSGEIPSELGL-----CSSLEEIYLAE 523 (627)
Q Consensus 458 ~~~~~~~-----~~ll~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~-----l~~L~~L~L~~ 523 (627)
+..+... +.+ ++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++
T Consensus 301 ~~~l~~~l~~~~~~L-~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 301 ARLLCETLLEPGCQL-ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHHHHTSTTCCC-CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHhccCCccc-eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence 2222211 244 5666666665543 3344566677888888888776554443332 56788888888
Q ss_pred Ccccc----cCChhccCCCCCCEEECCCCcCcccc----chhccc-C-cCCeeeCcCCcccc
Q 037951 524 NFFNG----FIPSFFRTSRGIRKVDLSRNNFFGQI----PIFLEA-L-SLEYLNLSFNDFEG 575 (627)
Q Consensus 524 n~i~~----~~~~~l~~l~~L~~L~ls~n~l~~~~----p~~~~~-~-~L~~L~ls~n~l~~ 575 (627)
|.+++ .+|..+..+++|++|++++|++.+.- ...+.. . .|+.|++.++....
T Consensus 380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 88775 56777777788888888888776521 111211 2 27777777666544
No 44
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=2.5e-32 Score=272.29 Aligned_cols=281 Identities=18% Similarity=0.253 Sum_probs=210.4
Q ss_pred hhhcCCHHHHHHHHHHHHhcCCCCCCCCCCC----CCCCCCCCcccceeecCCCCcceecccccCCCCCCCEEECCCCCC
Q 037951 10 QVAAFEEGDLAALQAFKSMISHDPQGILNSW----NDSRHFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTI 85 (627)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~w----~~~~~~c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~ 85 (627)
+.+++...|+++|..+|..+..++.++...| .....+|.|.|+.|+.....+. -....++++|++++|.+
T Consensus 20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~------~~~~~~l~~L~L~~n~l 93 (328)
T 4fcg_A 20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLE------DATQPGRVALELRSVPL 93 (328)
T ss_dssp C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHH------HHTSTTCCEEEEESSCC
T ss_pred eccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHh------cccccceeEEEccCCCc
Confidence 3455667799999999999987887778889 4567889999998832111111 12357899999999999
Q ss_pred cccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCC
Q 037951 86 QGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFL 165 (627)
Q Consensus 86 ~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 165 (627)
+ .+|..+.++++|++|+|++|.++ .+|..++++++|++|++++|.+. .+|..+.++++|++|++++|.+.+.+|..+
T Consensus 94 ~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~ 170 (328)
T 4fcg_A 94 P-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPL 170 (328)
T ss_dssp S-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCS
T ss_pred h-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhH
Confidence 8 78888999999999999999999 88999999999999999999999 789999999999999999998888888876
Q ss_pred CC---------CCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChh
Q 037951 166 GN---------LTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPS 236 (627)
Q Consensus 166 ~~---------l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 236 (627)
.. +++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+.+|..
T Consensus 171 ~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 171 ASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPI 248 (328)
T ss_dssp EEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCC
T ss_pred hhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHH
Confidence 54 777777777777777 56666777777777777777776 45556667777777777777666666655
Q ss_pred hhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccC
Q 037951 237 LGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNL 302 (627)
Q Consensus 237 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l 302 (627)
+.. +++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..++.+++++.+++..+.+
T Consensus 249 ~~~-l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 249 FGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp TTC-CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hcC-CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 544 66666666666666666666666666666666666666666666666666666666655433
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.1e-30 Score=258.62 Aligned_cols=288 Identities=22% Similarity=0.234 Sum_probs=181.0
Q ss_pred CCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCC
Q 037951 74 FLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALP 153 (627)
Q Consensus 74 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~ 153 (627)
++++++++++.++ .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4677777777776 5565553 577888888887776666677778888888888887776667777778888888888
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccc--cCCccccCCCCCcEEEeecccCcc
Q 037951 154 MNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSG--SIPPSIYNLSFLVIFSVSENQMHG 231 (627)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~ 231 (627)
+|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+..+..+ +|+.|++++|.+.+
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 88777 4454444 678888888888876655667778888888888887753 455566666 77777777777663
Q ss_pred CCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCcc
Q 037951 232 SLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMG 311 (627)
Q Consensus 232 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 311 (627)
+|..+ .++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.+
T Consensus 187 -l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l------ 256 (332)
T 2ft3_A 187 -IPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV------ 256 (332)
T ss_dssp -CCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBC------
T ss_pred -cCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeec------
Confidence 44332 24555556655555555445555555555555555555554444455555555555555544431
Q ss_pred ccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccC------CCCCCEEeCCCCccc--c
Q 037951 312 FMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGN------LVNLYSLQTEENQFT--G 383 (627)
Q Consensus 312 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~~~--~ 383 (627)
+..+..+++|+.|++++|+++ +..+..+.. .++|+.|++++|.+. +
T Consensus 257 -p~~l~~l~~L~~L~l~~N~l~-------------------------~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 257 -PAGLPDLKLLQVVYLHTNNIT-------------------------KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp -CTTGGGCTTCCEEECCSSCCC-------------------------BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred -ChhhhcCccCCEEECCCCCCC-------------------------ccChhHccccccccccccccceEeecCcccccc
Confidence 222344444445555444444 333333322 356777777777765 4
Q ss_pred ccchhhcCCCCCcEeeccCCc
Q 037951 384 SIPKEMGKLLNLQGLDFGGNH 404 (627)
Q Consensus 384 ~~~~~~~~l~~L~~L~L~~n~ 404 (627)
..+..+..+++|+.+++++|+
T Consensus 311 ~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 311 VQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCGGGGTTBCCSTTEEC----
T ss_pred cCcccccccchhhhhhccccc
Confidence 556677778888888887764
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.9e-33 Score=293.61 Aligned_cols=351 Identities=17% Similarity=0.114 Sum_probs=256.0
Q ss_pred CCCCceeccCCccccc----cCCccccCCCCCcEeecccccccccCccCc-CCCC----CcCEEeccCccCCCCCCCCcc
Q 037951 241 FPNLKLFQTNENFFSG----SIPISLSNASKLEYVEIASNSFFGKLSVNF-GGMK----NLSYLILEYNNLGSGESDEMG 311 (627)
Q Consensus 241 ~~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~l~----~L~~L~l~~n~l~~~~~~~~~ 311 (627)
+++|++|++++|.+++ .++..+..+++|++|++++|.+.+..+..+ ..++ +|++|++++|.++..... .
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~--~ 104 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG--V 104 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH--H
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH--H
Confidence 4444444444444432 234455566777777777777654332221 2233 688888888877642211 3
Q ss_pred ccccCCCCCcccEEEccCcccccccchhHHhc----cccccEEEeeccccccc----CcccccCCCCCCEEeCCCCcccc
Q 037951 312 FMNSLANCSKLQVLSLGGNQFRGALPHSIANL----SSQLQILVLGTNQLYGS----IPSGIGNLVNLYSLQTEENQFTG 383 (627)
Q Consensus 312 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~----~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~~ 383 (627)
++..+..+++|++|++++|.+++..+..+... .++|++|++++|.+++. ++..+..+++|++|++++|.++.
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 45677888899999999998876655555442 23699999999988763 35566778999999999999876
Q ss_pred ccchhhc-----CCCCCcEeeccCCccccc----CChhhhCCCCCCEEEccCCccccccC-----hhhcCCCCCCEEECc
Q 037951 384 SIPKEMG-----KLLNLQGLDFGGNHFSGE----IPSTLGNLSSLYEIFLGDNNLSGVIP-----SSLGNLERLAILEMF 449 (627)
Q Consensus 384 ~~~~~~~-----~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~-----~~l~~l~~L~~L~l~ 449 (627)
..+..+. ..++|+.|++++|.+++. ++..+..+++|++|++++|.++.... ..+..+++|+.|+++
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence 5444443 367999999999999864 46677889999999999999875432 223358999999999
Q ss_pred CCcCccc----CCccccccccCccEEEccCCccccCCCcccc-----CCCCCCEEEccCCccccc----CCccccCCCCC
Q 037951 450 ANELSGT----IPGDIFNISSLSVSLDLAENHFVGSIPPRIG-----NLKALRCFDVSNNDLSGE----IPSELGLCSSL 516 (627)
Q Consensus 450 ~n~l~~~----~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L 516 (627)
+|.+.+. ++..+..++.+ ++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|
T Consensus 265 ~n~l~~~~~~~l~~~l~~~~~L-~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 343 (461)
T 1z7x_W 265 ECGITAKGCGDLCRVLRAKESL-KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCTTC-CEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSC
T ss_pred CCCCCHHHHHHHHHHHhhCCCc-ceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCc
Confidence 9998754 56667778888 9999999998754333332 237999999999999855 56677888999
Q ss_pred CEEECCCCcccccCChhccC-----CCCCCEEECCCCcCcc----ccchhcccCc-CCeeeCcCCccccc--------CC
Q 037951 517 EEIYLAENFFNGFIPSFFRT-----SRGIRKVDLSRNNFFG----QIPIFLEALS-LEYLNLSFNDFEGR--------LP 578 (627)
Q Consensus 517 ~~L~L~~n~i~~~~~~~l~~-----l~~L~~L~ls~n~l~~----~~p~~~~~~~-L~~L~ls~n~l~~~--------~p 578 (627)
++|++++|.+++..+..+.. .++|++|++++|.+.+ .+|..+...+ |++|++++|++.+. +|
T Consensus 344 ~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~ 423 (461)
T 1z7x_W 344 LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVR 423 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHT
T ss_pred cEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhc
Confidence 99999999998775554442 6799999999999986 7888887777 99999999998764 22
Q ss_pred CCCccCCCCccccccCCC
Q 037951 579 TRGIFANASAISVGGCNR 596 (627)
Q Consensus 579 ~~~~~~~l~~l~~~~n~~ 596 (627)
. ...+++.+.+.++..
T Consensus 424 ~--~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 424 Q--PGCLLEQLVLYDIYW 439 (461)
T ss_dssp S--TTCCCCEEECTTCCC
T ss_pred c--CCcchhheeeccccc
Confidence 1 134577777776654
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.2e-29 Score=254.25 Aligned_cols=294 Identities=18% Similarity=0.209 Sum_probs=165.4
Q ss_pred CCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCC
Q 037951 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPM 154 (627)
Q Consensus 75 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 154 (627)
+++++++++.++ .+|..+. +++++|++++|.+++..+..|+++++|++|++++|.+++..|..+..+++|++|++++
T Consensus 33 l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 455555555554 3444332 4556666666666554444556666666666666666555555566666666666666
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccc--cCCccccCCCCCcEEEeecccCccC
Q 037951 155 NNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSG--SIPPSIYNLSFLVIFSVSENQMHGS 232 (627)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~ 232 (627)
|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+. .
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~ 185 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T 185 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-S
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-c
Confidence 6655 3333332 566666666666665555556666666666666666642 44555666666666666666665 2
Q ss_pred CChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccc
Q 037951 233 LPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGF 312 (627)
Q Consensus 233 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 312 (627)
+|... .++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.+
T Consensus 186 l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l------- 255 (330)
T 1xku_A 186 IPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV------- 255 (330)
T ss_dssp CCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-------
T ss_pred CCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccC-------
Confidence 33322 25566666666666555555666666666666666666665555566666666666666665532
Q ss_pred cccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCcccc--ccchhhc
Q 037951 313 MNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTG--SIPKEMG 390 (627)
Q Consensus 313 ~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~ 390 (627)
+..+..+++|++|++++|.+++..+..+.... .....+.++.+++++|.+.. ..|..+.
T Consensus 256 p~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~-------------------~~~~~~~l~~l~l~~N~~~~~~i~~~~f~ 316 (330)
T 1xku_A 256 PGGLADHKYIQVVYLHNNNISAIGSNDFCPPG-------------------YNTKKASYSGVSLFSNPVQYWEIQPSTFR 316 (330)
T ss_dssp CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS-------------------CCTTSCCCSEEECCSSSSCGGGSCGGGGT
T ss_pred ChhhccCCCcCEEECCCCcCCccChhhcCCcc-------------------cccccccccceEeecCcccccccCccccc
Confidence 23345556666666666655533332221110 00123566677777776542 4456677
Q ss_pred CCCCCcEeeccCCc
Q 037951 391 KLLNLQGLDFGGNH 404 (627)
Q Consensus 391 ~l~~L~~L~L~~n~ 404 (627)
.+++++.+++++|+
T Consensus 317 ~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 317 CVYVRAAVQLGNYK 330 (330)
T ss_dssp TCCCGGGEEC----
T ss_pred cccceeEEEecccC
Confidence 77777777777764
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.5e-29 Score=253.55 Aligned_cols=129 Identities=20% Similarity=0.182 Sum_probs=61.9
Q ss_pred CCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEC
Q 037951 442 RLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYL 521 (627)
Q Consensus 442 ~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 521 (627)
+|++|++++|.+.+..+..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|++|++
T Consensus 194 ~L~~L~l~~n~i~~~~~~~l~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 194 TLNELHLDHNKIQAIELEDLLRYSKL-YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYL 271 (332)
T ss_dssp SCSCCBCCSSCCCCCCTTSSTTCTTC-SCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCHHHhcCCCCC-CEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEEC
Confidence 34444444444433333333334444 44444444444444444555555555555555555 45555555555555555
Q ss_pred CCCcccccCChhccC------CCCCCEEECCCCcCc--cccchhcccCc-CCeeeCcCCc
Q 037951 522 AENFFNGFIPSFFRT------SRGIRKVDLSRNNFF--GQIPIFLEALS-LEYLNLSFND 572 (627)
Q Consensus 522 ~~n~i~~~~~~~l~~------l~~L~~L~ls~n~l~--~~~p~~~~~~~-L~~L~ls~n~ 572 (627)
++|.+++..+..|.. ...|+.|++++|++. +..|..+..+. |+.+++++|+
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 555555544444432 244556666666554 34444455444 6666665553
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.9e-29 Score=249.77 Aligned_cols=128 Identities=19% Similarity=0.197 Sum_probs=61.0
Q ss_pred CCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEEC
Q 037951 442 RLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYL 521 (627)
Q Consensus 442 ~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L 521 (627)
+|++|++++|.+.+..+..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 193 ~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 193 SLTELHLDGNKITKVDAASLKGLNNL-AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYL 270 (330)
T ss_dssp TCSEEECTTSCCCEECTGGGTTCTTC-CEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEEC
T ss_pred cCCEEECCCCcCCccCHHHhcCCCCC-CEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEEC
Confidence 34444444444443333333344444 44444444444433344455555555555555555 45555555555555555
Q ss_pred CCCcccccCChhccC------CCCCCEEECCCCcCcc--ccchhcccCc-CCeeeCcCC
Q 037951 522 AENFFNGFIPSFFRT------SRGIRKVDLSRNNFFG--QIPIFLEALS-LEYLNLSFN 571 (627)
Q Consensus 522 ~~n~i~~~~~~~l~~------l~~L~~L~ls~n~l~~--~~p~~~~~~~-L~~L~ls~n 571 (627)
++|.+++..+..|.. ...++.+++++|++.. ..|..+.... ++.+++++|
T Consensus 271 ~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 555555544444422 2455666666665542 3334444444 666666655
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.6e-29 Score=254.24 Aligned_cols=289 Identities=19% Similarity=0.175 Sum_probs=230.6
Q ss_pred CCCCCCCCCCCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccc
Q 037951 38 NSWNDSRHFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANL 117 (627)
Q Consensus 38 ~~w~~~~~~c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 117 (627)
..|......|.|.++ |++++++++.. |..+. ++|++|++++|.+++..+..|.++++|++|++++|.+++..+..|
T Consensus 21 ~~~~~~~~~C~~~~~-c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 96 (353)
T 2z80_A 21 ESSNQASLSCDRNGI-CKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96 (353)
T ss_dssp ------CCEECTTSE-EECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cCCCccCCCCCCCeE-eeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhc
Confidence 345556678999988 99999999865 44444 589999999999997777789999999999999999998888899
Q ss_pred cCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCC-CCCCCCCCCCEEECCCC-CCCCCCCCccCCCCCc
Q 037951 118 SYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIP-PFLGNLTSLEVVSLAGN-PFGGNIPDSLGQLKEL 195 (627)
Q Consensus 118 ~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n-~~~~~~~~~l~~l~~L 195 (627)
+++++|++|++++|++++..+..+.++++|++|++++|.+++..+ ..+.++++|++|++++| .+....+..+..+++|
T Consensus 97 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 176 (353)
T 2z80_A 97 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176 (353)
T ss_dssp TTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence 999999999999999996666669999999999999999995444 47899999999999999 4776667889999999
Q ss_pred cEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCcccc---CCCCCcEee
Q 037951 196 KTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLS---NASKLEYVE 272 (627)
Q Consensus 196 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~ 272 (627)
++|++++|.+.+..|..+..+++|+.|++++|.+. .+|..+...+++|++|++++|.+++..+..+. ....++.++
T Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred CEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhhccc
Confidence 99999999999888999999999999999999985 56666666689999999999988875444332 355677777
Q ss_pred cccccccc----cCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccc
Q 037951 273 IASNSFFG----KLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALP 337 (627)
Q Consensus 273 l~~~~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 337 (627)
++++.+.+ .+|..+..+++|++|++++|.++.++.. .+..+++|++|++++|++.+..|
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~------~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDG------IFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTT------TTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHH------HHhcCCCCCEEEeeCCCccCcCC
Confidence 77776654 2445567777888888888877754321 34667778888888887775543
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=7.7e-31 Score=285.25 Aligned_cols=379 Identities=15% Similarity=0.055 Sum_probs=207.6
Q ss_pred CCCCCCEEECCCCCCCCCCCCccCC-CC-CccEEEeeCccc-cc-cCCccccCCCCCcEEEeecccCccCCChh---hhh
Q 037951 167 NLTSLEVVSLAGNPFGGNIPDSLGQ-LK-ELKTLGIGGNNL-SG-SIPPSIYNLSFLVIFSVSENQMHGSLPPS---LGL 239 (627)
Q Consensus 167 ~l~~L~~L~L~~n~~~~~~~~~l~~-l~-~L~~L~l~~n~~-~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---~~~ 239 (627)
.+++|++|++++|.+++..+..+.. ++ +|++|++++|.. .. .++.....+++|+.|++++|.+.+....+ +..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4555555666555554333333333 22 366666665541 10 11122235566666666666655443221 223
Q ss_pred cCCCCceeccCCcccc----ccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCcccccc
Q 037951 240 YFPNLKLFQTNENFFS----GSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNS 315 (627)
Q Consensus 240 ~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 315 (627)
.+++|++|+++++.++ +.++..+..+++|+.|++++|.+.+ .+..+..+++|++|+++........ ......
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~ 265 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGM---PEKYMN 265 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTC---TTSSSC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccch---HHHHHH
Confidence 3666666666666664 2334445566777777777766654 3345666777777777643221100 123345
Q ss_pred CCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCc-ccccCCCCCCEEeCCCCccccccchhhcCCCC
Q 037951 316 LANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIP-SGIGNLVNLYSLQTEENQFTGSIPKEMGKLLN 394 (627)
Q Consensus 316 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 394 (627)
+..+++|+.++++++... .+|..+..++ +|++|++++|.+++... ..+..+++|+.|+++++.....++.....+++
T Consensus 266 l~~~~~L~~L~l~~~~~~-~l~~~~~~~~-~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPN-EMPILFPFAA-QIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCTTCCEEEETTCCTT-TGGGGGGGGG-GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTT
T ss_pred hhccccccccCccccchh-HHHHHHhhcC-CCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCC
Confidence 666777777777765322 4555555444 77788887777554322 33567778888877733333333444456777
Q ss_pred CcEeeccC-----------Cccccc-CChhhhCCCCCCEEEccCCccccccChhhcC-CCCCCEEECc----CCcCccc-
Q 037951 395 LQGLDFGG-----------NHFSGE-IPSTLGNLSSLYEIFLGDNNLSGVIPSSLGN-LERLAILEMF----ANELSGT- 456 (627)
Q Consensus 395 L~~L~L~~-----------n~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~----~n~l~~~- 456 (627)
|+.|++++ +.+++. +...+..+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+.+.
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 88888873 444432 2222445778888888777777665555554 7778887775 4444421
Q ss_pred ----CCccccccccCccEEEccCCc--cccCCCcccc-CCCCCCEEEccCCccccc-CCccccCCCCCCEEECCCCcccc
Q 037951 457 ----IPGDIFNISSLSVSLDLAENH--FVGSIPPRIG-NLKALRCFDVSNNDLSGE-IPSELGLCSSLEEIYLAENFFNG 528 (627)
Q Consensus 457 ----~~~~~~~~~~ll~~L~l~~n~--l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~~ 528 (627)
++..+..++++ ++|+++.|. +.+..+..+. .+++|++|++++|++++. ++..+..+++|++|++++|.+++
T Consensus 424 ~~~~~~~~~~~~~~L-~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKL-RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp CHHHHHHHHHHCTTC-CEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred HHHHHHHHHHhCCCC-CEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 11223345555 566665433 3332222222 356666666666666542 33344556666666666666554
Q ss_pred c-CChhccCCCCCCEEECCCCcCcc
Q 037951 529 F-IPSFFRTSRGIRKVDLSRNNFFG 552 (627)
Q Consensus 529 ~-~~~~l~~l~~L~~L~ls~n~l~~ 552 (627)
. ++..+..+++|+.|++++|+++.
T Consensus 503 ~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 503 RAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHHHHHhcCccCeeECcCCcCCH
Confidence 3 23333456666666666666654
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=5.4e-28 Score=239.52 Aligned_cols=229 Identities=23% Similarity=0.241 Sum_probs=132.6
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccc--cchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEE
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGS--IPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIF 423 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 423 (627)
++++|++++|.++...+..+..+++|+.|++++|.++.. .+..+..+++|+.|++++|.+. .++..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 455555555555533333345555555555555555422 2344445556666666666555 3444455556666666
Q ss_pred ccCCccccccC-hhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCcccc-CCCccccCCCCCCEEEccCCc
Q 037951 424 LGDNNLSGVIP-SSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVG-SIPPRIGNLKALRCFDVSNND 501 (627)
Q Consensus 424 l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~ 501 (627)
+++|.+++..+ ..+..+++|+.|++++|.+.+..+..+..++++ ++|++++|.+.+ ..|..+..+++|++|++++|.
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC-CEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 66666554333 345555666666666666555555555555555 566666666554 345556666666666666666
Q ss_pred ccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccC-c-CCeeeCcCCccccc
Q 037951 502 LSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL-S-LEYLNLSFNDFEGR 576 (627)
Q Consensus 502 l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~-~-L~~L~ls~n~l~~~ 576 (627)
+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..|..+... . |++|++++|++.+.
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~ 263 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 263 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence 665556666666666666666666666555556666666666666666666666555554 2 66666666666553
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.5e-30 Score=283.02 Aligned_cols=428 Identities=14% Similarity=0.088 Sum_probs=203.2
Q ss_pred ccccCCCCCCCEEECCCCCCc---ccCCcccC------------CCCCCCEEeCCCCcCcccCCccccC-CCC-CCEEEc
Q 037951 66 SPQIGNLSFLREINLMNNTIQ---GEIPLEFG------------RLRRLETLLLSDNSLVGKIPANLSY-CSR-LTVLVL 128 (627)
Q Consensus 66 ~~~l~~l~~L~~L~Ls~~~~~---~~~~~~~~------------~l~~L~~L~L~~n~i~~~~~~~~~~-l~~-L~~L~l 128 (627)
+..+..+++|++|+++++... +.+|..++ .+++|++|+|++|.+++..+..+.. +++ |++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 334456777888888775321 22332222 4566666666666655444444443 233 666666
Q ss_pred cCcc-ccc-cCCccccCCCCCCeeeCCCCCCCCCC----CCCCCCCCCCCEEECCCCCCCCCC----CCccCCCCCccEE
Q 037951 129 GNNK-LVG-SIPFEFVSLYKLKQLALPMNNLTGGI----PPFLGNLTSLEVVSLAGNPFGGNI----PDSLGQLKELKTL 198 (627)
Q Consensus 129 s~n~-l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L 198 (627)
++|. ++. .++.....+++|++|++++|.+++.. +..+..+++|++|++++|.+++.. +..+.++++|++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 6664 111 11122235566666666666554331 122334555666666555554211 1222334455555
Q ss_pred EeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccc
Q 037951 199 GIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSF 278 (627)
Q Consensus 199 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 278 (627)
++++|.+.+ ++..+..+++|+.++++..... .+ .+..+..+..+++|+.++++++.
T Consensus 226 ~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~--~~--------------------~~~~~~~l~~~~~L~~L~l~~~~- 281 (592)
T 3ogk_B 226 KVGDFEILE-LVGFFKAAANLEEFCGGSLNED--IG--------------------MPEKYMNLVFPRKLCRLGLSYMG- 281 (592)
T ss_dssp ECSSCBGGG-GHHHHHHCTTCCEEEECBCCCC--TT--------------------CTTSSSCCCCCTTCCEEEETTCC-
T ss_pred eccCccHHH-HHHHHhhhhHHHhhcccccccc--cc--------------------hHHHHHHhhccccccccCccccc-
Confidence 555544442 3333444444444444321110 00 01122234445556666555432
Q ss_pred cccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeeccccc
Q 037951 279 FGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLY 358 (627)
Q Consensus 279 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 358 (627)
....+..+..+++|++|++++|.++.. .+...+..+++|++|+++ +.+.+..
T Consensus 282 ~~~l~~~~~~~~~L~~L~Ls~~~l~~~-----~~~~~~~~~~~L~~L~L~-~~~~~~~---------------------- 333 (592)
T 3ogk_B 282 PNEMPILFPFAAQIRKLDLLYALLETE-----DHCTLIQKCPNLEVLETR-NVIGDRG---------------------- 333 (592)
T ss_dssp TTTGGGGGGGGGGCCEEEETTCCCCHH-----HHHHHHTTCTTCCEEEEE-GGGHHHH----------------------
T ss_pred hhHHHHHHhhcCCCcEEecCCCcCCHH-----HHHHHHHhCcCCCEEecc-CccCHHH----------------------
Confidence 222333344455555555555543321 111223445555555555 2222222
Q ss_pred ccCcccccCCCCCCEEeCCC-----------Cccccc-cchhhcCCCCCcEeeccCCcccccCChhhhC-CCCCCEEEcc
Q 037951 359 GSIPSGIGNLVNLYSLQTEE-----------NQFTGS-IPKEMGKLLNLQGLDFGGNHFSGEIPSTLGN-LSSLYEIFLG 425 (627)
Q Consensus 359 ~~~~~~~~~l~~L~~L~l~~-----------n~~~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~~~L~~L~l~ 425 (627)
++.....+++|++|++++ +.+++. +......+++|+.|+++.|.+++..+..+.. +++|++|+++
T Consensus 334 --l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 334 --LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp --HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred --HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 222223344444444442 222221 1111233555555555555554443333333 5555555554
Q ss_pred ----CCccccc-----cChhhcCCCCCCEEECcCCc--CcccCCccccc-cccCccEEEccCCccccC-CCccccCCCCC
Q 037951 426 ----DNNLSGV-----IPSSLGNLERLAILEMFANE--LSGTIPGDIFN-ISSLSVSLDLAENHFVGS-IPPRIGNLKAL 492 (627)
Q Consensus 426 ----~n~~~~~-----~~~~l~~l~~L~~L~l~~n~--l~~~~~~~~~~-~~~ll~~L~l~~n~l~~~-~~~~l~~l~~L 492 (627)
.|.+++. ++..+..+++|+.|+++.|. +.+..+..+.. ++.+ ++|++++|.+.+. ++..+..+++|
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L-~~L~L~~n~l~~~~~~~~~~~~~~L 490 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV-RWMLLGYVGESDEGLMEFSRGCPNL 490 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC-CEEEECSCCSSHHHHHHHHTCCTTC
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc-eEeeccCCCCCHHHHHHHHhcCccc
Confidence 3334321 22224445566666664332 33222222222 3444 6666666665542 23334667888
Q ss_pred CEEEccCCccccc-CCccccCCCCCCEEECCCCcccccCChhc-cCCCCCCEEECCCC
Q 037951 493 RCFDVSNNDLSGE-IPSELGLCSSLEEIYLAENFFNGFIPSFF-RTSRGIRKVDLSRN 548 (627)
Q Consensus 493 ~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~~~~~~~l-~~l~~L~~L~ls~n 548 (627)
++|++++|.+++. ++..+..+++|++|++++|+++......+ ..++.+....+..+
T Consensus 491 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 491 QKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 8888888887644 34445678888889998888876543333 34566655555443
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.9e-27 Score=232.90 Aligned_cols=266 Identities=19% Similarity=0.193 Sum_probs=194.3
Q ss_pred cEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccC
Q 037951 323 QVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGG 402 (627)
Q Consensus 323 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 402 (627)
+.++.+++.++ .+|..+ ++++++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 34555555554 334322 23677777777777766666677777888888888877766677777788888888888
Q ss_pred Cc-ccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccC
Q 037951 403 NH-FSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGS 481 (627)
Q Consensus 403 n~-~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~ 481 (627)
|. +....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|++.+.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL-THLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCc-cEEECCCCccccc
Confidence 86 665556677778888888888888877667777778888888888887775444456667777 7888888887766
Q ss_pred CCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccC
Q 037951 482 IPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL 561 (627)
Q Consensus 482 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~ 561 (627)
.+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++..+..+..+++|+.|++++|++....+.. +..
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~ 247 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLW 247 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHH
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHH
Confidence 6666888889999999999988777888888899999999999998877777888899999999999887544422 112
Q ss_pred c-CCeeeCcCCcccccCCC---CCccCCCCccccccC
Q 037951 562 S-LEYLNLSFNDFEGRLPT---RGIFANASAISVGGC 594 (627)
Q Consensus 562 ~-L~~L~ls~n~l~~~~p~---~~~~~~l~~l~~~~n 594 (627)
. ++.+..+.+.+....|. +..+..+...++.||
T Consensus 248 ~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 248 AWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 3 66667777888777774 334556666666666
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6e-27 Score=231.95 Aligned_cols=213 Identities=17% Similarity=0.189 Sum_probs=142.5
Q ss_pred ccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCC-hhhhCCCCCCEEEccCCccccccChhhcCCCCC
Q 037951 365 IGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIP-STLGNLSSLYEIFLGDNNLSGVIPSSLGNLERL 443 (627)
Q Consensus 365 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L 443 (627)
+..+++|+.|++++|.++ .++..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 74 ~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 74 DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152 (306)
T ss_dssp HHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred cccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence 344555555555555555 344445556666666666666554333 345566666666666666665555666666666
Q ss_pred CEEECcCCcCcc-cCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECC
Q 037951 444 AILEMFANELSG-TIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLA 522 (627)
Q Consensus 444 ~~L~l~~n~l~~-~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 522 (627)
++|++++|.+.+ ..|..+..++.+ ++|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 153 ~~L~l~~n~l~~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 231 (306)
T 2z66_A 153 EVLKMAGNSFQENFLPDIFTELRNL-TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS 231 (306)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred CEEECCCCccccccchhHHhhCcCC-CEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence 666666666654 355666666666 677777777776667778888889999999998886666678888999999999
Q ss_pred CCcccccCChhccCCC-CCCEEECCCCcCccccc--hhcccCc-CCeeeCcCCcccccCCC
Q 037951 523 ENFFNGFIPSFFRTSR-GIRKVDLSRNNFFGQIP--IFLEALS-LEYLNLSFNDFEGRLPT 579 (627)
Q Consensus 523 ~n~i~~~~~~~l~~l~-~L~~L~ls~n~l~~~~p--~~~~~~~-L~~L~ls~n~l~~~~p~ 579 (627)
+|.+++..|..+..++ +|+.|++++|++...-+ .+..-.. .+.+.+..+.+....|.
T Consensus 232 ~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 232 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp TSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred CCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 9999888888888874 89999999999876422 2222223 45555566666655553
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=5.1e-27 Score=229.85 Aligned_cols=254 Identities=21% Similarity=0.183 Sum_probs=220.0
Q ss_pred ccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccC
Q 037951 347 LQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGD 426 (627)
Q Consensus 347 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 426 (627)
-++++.+++.++ .+|..+ .++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..|..+++|++|++++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 367888888887 455443 57999999999999987778899999999999999999988888999999999999999
Q ss_pred Cc-cccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc
Q 037951 427 NN-LSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE 505 (627)
Q Consensus 427 n~-~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 505 (627)
|. +....+..+..+++|++|++++|.+.+..+..+..++++ ++|++++|.+.+..+..+..+++|++|++++|++++.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL-QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCC-CEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 98 876668889999999999999999997777888889999 9999999999977777799999999999999999966
Q ss_pred CCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCCCccC
Q 037951 506 IPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFA 584 (627)
Q Consensus 506 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~~~~~ 584 (627)
.+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+..+..++ |++|++++|++....+......
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~ 248 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHH
Confidence 666799999999999999999999999999999999999999999987777788877 9999999999987665433444
Q ss_pred CCCccccccCCCCcccCCCC
Q 037951 585 NASAISVGGCNRLCGGIHEL 604 (627)
Q Consensus 585 ~l~~l~~~~n~~l~~~~~~l 604 (627)
.++.+....+...|..++.+
T Consensus 249 ~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 249 WLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp HHHHCCSEECCCBEEESGGG
T ss_pred HHHhcccccCccccCCchHh
Confidence 55666677777777665543
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.4e-27 Score=233.78 Aligned_cols=222 Identities=18% Similarity=0.249 Sum_probs=146.2
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
.++.|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|+.|++++|.+. .+|..+..+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 5666666666665 45555666666666666666666 56666666666777777776666 556666666677777777
Q ss_pred CCccccccChhhcC---------CCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEE
Q 037951 426 DNNLSGVIPSSLGN---------LERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFD 496 (627)
Q Consensus 426 ~n~~~~~~~~~l~~---------l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 496 (627)
+|.+.+.+|..+.. +++|++|++++|.+. .+|..+..++.+ ++|++++|.+.+ +|..+..+++|++|+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-KSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-CEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-CEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 66666566655443 666666666666666 666666666666 666666666663 444566666777777
Q ss_pred ccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcc
Q 037951 497 VSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDF 573 (627)
Q Consensus 497 Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l 573 (627)
+++|++.+.+|..++.+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..++ |+.+++..+.+
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 777666666666666667777777777666666666666677777777777776666676666666 66666665544
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.5e-27 Score=239.65 Aligned_cols=278 Identities=19% Similarity=0.208 Sum_probs=191.1
Q ss_pred CCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCC
Q 037951 289 MKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNL 368 (627)
Q Consensus 289 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 368 (627)
++.....+.+++.++.++. .+ .++|++|++++|.+++..+..+..+. +|++|++++|.+++..+..+.++
T Consensus 30 C~~~~~c~~~~~~l~~iP~-------~~--~~~L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSIPS-------GL--TEAVKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSL 99 (353)
T ss_dssp ECTTSEEECCSTTCSSCCT-------TC--CTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCeEeeCCCCCcccccc-------cc--cccCcEEECCCCcCcccCHHHhccCC-CCCEEECCCCccCccCHhhcCCC
Confidence 4445557777777776432 22 24788888888887765555666665 78888888888777667777778
Q ss_pred CCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCC-hhhhCCCCCCEEEccCCc-cccccChhhcCCCCCCEE
Q 037951 369 VNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIP-STLGNLSSLYEIFLGDNN-LSGVIPSSLGNLERLAIL 446 (627)
Q Consensus 369 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L 446 (627)
++|++|++++|++++..+..+..+++|++|++++|++.+..+ ..+..+++|++|++++|. +....+..+..+++|+.|
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 888888888887775555557777888888888887774333 367777888888888774 665556677777788888
Q ss_pred ECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccc---cCCCCCCEEECCC
Q 037951 447 EMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSEL---GLCSSLEEIYLAE 523 (627)
Q Consensus 447 ~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~L~~ 523 (627)
++++|.+.+..|..+..++.+ ++|++++|.+....+..+..+++|++|++++|.+++..+..+ ...+.++.+++++
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L-~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNV-SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRN 258 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEE-EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEES
T ss_pred ECCCCCcCccCHHHHhccccC-CeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccccc
Confidence 888887776667777777777 778888777753322334457777888888887775444333 2356677777777
Q ss_pred Cccccc----CChhccCCCCCCEEECCCCcCccccchh-cccCc-CCeeeCcCCcccccCC
Q 037951 524 NFFNGF----IPSFFRTSRGIRKVDLSRNNFFGQIPIF-LEALS-LEYLNLSFNDFEGRLP 578 (627)
Q Consensus 524 n~i~~~----~~~~l~~l~~L~~L~ls~n~l~~~~p~~-~~~~~-L~~L~ls~n~l~~~~p 578 (627)
+.+.+. +|..+..+++|+.|++++|.+. .+|.. +..++ |++|++++|++.+..|
T Consensus 259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 776653 5666777777888888888777 45544 45555 7788888887776655
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=4.8e-26 Score=238.19 Aligned_cols=247 Identities=21% Similarity=0.238 Sum_probs=149.9
Q ss_pred cCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCC
Q 037951 292 LSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNL 371 (627)
Q Consensus 292 L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 371 (627)
...++.++..++.++. .+ .++++.|++++|.+++..+..+..+. +|++|++++|.+++..+..|.++++|
T Consensus 56 ~~~v~c~~~~l~~iP~-------~~--~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L 125 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQ-------GI--PSNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASL 125 (452)
T ss_dssp SCEEECCSSCCSSCCS-------CC--CTTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CcEEEECCCCcCccCC-------CC--CCCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccC
Confidence 4556666666555332 11 14666777777766666566666555 66666666666666655666666666
Q ss_pred CEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCc-cccccChhhcCCCCCCEEECcC
Q 037951 372 YSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNN-LSGVIPSSLGNLERLAILEMFA 450 (627)
Q Consensus 372 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~ 450 (627)
+.|++++|.++...+..+..+++|+.|++++|.+....+..|..+++|++|++++|. +....+..+..+++|+.|++++
T Consensus 126 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 205 (452)
T 3zyi_A 126 NTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205 (452)
T ss_dssp CEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC
Confidence 666666666665555556666666666666666665555556666666666666643 3333333466666666666666
Q ss_pred CcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccC
Q 037951 451 NELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFI 530 (627)
Q Consensus 451 n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 530 (627)
|.+. .+| .+..+..+ ++|++++|.+.+..|..|.++++|++|++++|++++..+..|..+++|+.|+|++|++++..
T Consensus 206 n~l~-~~~-~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 206 CNIK-DMP-NLTPLVGL-EELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp SCCS-SCC-CCTTCTTC-CEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred Cccc-ccc-cccccccc-cEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 6665 233 34455555 56666666666555556666666666666666666555555666666666666666666555
Q ss_pred ChhccCCCCCCEEECCCCcCc
Q 037951 531 PSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 531 ~~~l~~l~~L~~L~ls~n~l~ 551 (627)
+..+..+++|+.|++++|++.
T Consensus 283 ~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTSSTTCTTCCEEECCSSCEE
T ss_pred hHHhccccCCCEEEccCCCcC
Confidence 555566666666666666553
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=5.7e-26 Score=236.75 Aligned_cols=247 Identities=23% Similarity=0.251 Sum_probs=156.0
Q ss_pred cCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCC
Q 037951 292 LSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNL 371 (627)
Q Consensus 292 L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 371 (627)
.+.++.++..++.++. .+ .++++.|++++|++.+..+..+..+. +|++|++++|.+.+..+..|.++++|
T Consensus 45 ~~~v~c~~~~l~~iP~-------~~--~~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L 114 (440)
T 3zyj_A 45 FSKVICVRKNLREVPD-------GI--STNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANL 114 (440)
T ss_dssp SCEEECCSCCCSSCCS-------CC--CTTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSC
T ss_pred CCEEEeCCCCcCcCCC-------CC--CCCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCccC
Confidence 4566666666655432 12 15667777777777665556666555 67777777777666656666667777
Q ss_pred CEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCc-cccccChhhcCCCCCCEEECcC
Q 037951 372 YSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNN-LSGVIPSSLGNLERLAILEMFA 450 (627)
Q Consensus 372 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~ 450 (627)
+.|++++|+++...+..+..+++|+.|++++|.+....+..|..+++|++|++++|. +....+..|..+++|+.|++++
T Consensus 115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~ 194 (440)
T 3zyj_A 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAM 194 (440)
T ss_dssp CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTT
T ss_pred CEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCC
Confidence 777777776665555566666777777777777665555566667777777776643 3333334566666777777777
Q ss_pred CcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccC
Q 037951 451 NELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFI 530 (627)
Q Consensus 451 n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~ 530 (627)
|.+. .+| .+..+.++ ++|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|+.|+|++|++++..
T Consensus 195 n~l~-~~~-~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 195 CNLR-EIP-NLTPLIKL-DELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp SCCS-SCC-CCTTCSSC-CEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred CcCc-ccc-ccCCCccc-CEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 6665 444 35555555 66666666666655666666666666666666666555666666666666666666666655
Q ss_pred ChhccCCCCCCEEECCCCcCc
Q 037951 531 PSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 531 ~~~l~~l~~L~~L~ls~n~l~ 551 (627)
+..|..+++|+.|++++|++.
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCEE
T ss_pred hhHhccccCCCEEEcCCCCcc
Confidence 555666666666666666653
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=5.5e-26 Score=236.85 Aligned_cols=248 Identities=21% Similarity=0.245 Sum_probs=217.4
Q ss_pred cccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeec
Q 037951 321 KLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDF 400 (627)
Q Consensus 321 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 400 (627)
..+.++..+..++ .+|..+. ++++.|++++|.+.+..+..|.++++|+.|++++|.+++..+..|.++++|+.|++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 4567888888887 5665443 48999999999999888889999999999999999999887889999999999999
Q ss_pred cCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCc-cccccccCccEEEccCCccc
Q 037951 401 GGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPG-DIFNISSLSVSLDLAENHFV 479 (627)
Q Consensus 401 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~ll~~L~l~~n~l~ 479 (627)
++|+++...+..|..+++|++|++++|.+....+..|..+++|+.|++++|...+.++. .+..++++ ++|++++|.+.
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~ 198 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL-RYLNLAMCNLR 198 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC-CEEECTTSCCS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc-CeecCCCCcCc
Confidence 99999977777899999999999999999987777899999999999999655545554 57778888 99999999998
Q ss_pred cCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcc
Q 037951 480 GSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLE 559 (627)
Q Consensus 480 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~ 559 (627)
. +| .+..+++|++|++++|++++..|..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..+.
T Consensus 199 ~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 199 E-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp S-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred c-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 4 44 478899999999999999988888999999999999999999999999999999999999999999977777777
Q ss_pred cCc-CCeeeCcCCcccc
Q 037951 560 ALS-LEYLNLSFNDFEG 575 (627)
Q Consensus 560 ~~~-L~~L~ls~n~l~~ 575 (627)
.+. |+.|++++|++.-
T Consensus 277 ~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 277 PLHHLERIHLHHNPWNC 293 (440)
T ss_dssp SCTTCCEEECCSSCEEC
T ss_pred cccCCCEEEcCCCCccC
Confidence 777 9999999999864
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=8.7e-26 Score=236.23 Aligned_cols=244 Identities=25% Similarity=0.187 Sum_probs=167.9
Q ss_pred eecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccc
Q 037951 54 CDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKL 133 (627)
Q Consensus 54 c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l 133 (627)
.++++.+++. +|..+. +++++|+|++|.+++..+..|.++++|++|+|++|.+++..+..|.++++|++|++++|++
T Consensus 59 v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 59 VVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp EECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 3445555554 344333 5788888888888877788888888888888888888877778888888888888888888
Q ss_pred cccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCC-CCCCCCCCccCCCCCccEEEeeCccccccCCcc
Q 037951 134 VGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGN-PFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPS 212 (627)
Q Consensus 134 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 212 (627)
+...+..|..+++|++|++++|.++...+..|.++++|++|++++| .+....+..+..+++|++|++++|.+++ +| .
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~ 213 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-N 213 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-C
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-c
Confidence 8666677888888888888888888666667888888888888874 4444444567778888888888887763 33 3
Q ss_pred ccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCc
Q 037951 213 IYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNL 292 (627)
Q Consensus 213 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 292 (627)
+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.+..+..|.++++|
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~-------------------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEI-------------------------RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEE-------------------------CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred ccccccccEEECcCCcCccc-------------------------CcccccCccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 55566666666666655543 34444555555555665555555555555566666
Q ss_pred CEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccc
Q 037951 293 SYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFR 333 (627)
Q Consensus 293 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 333 (627)
+.|++++|.++.... ..+..+++|+.|++++|.+.
T Consensus 269 ~~L~L~~N~l~~~~~------~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 269 VELNLAHNNLSSLPH------DLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CEEECCSSCCSCCCT------TSSTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCcCCccCh------HHhccccCCCEEEccCCCcC
Confidence 666666665554332 23445566666666666554
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=6.7e-27 Score=232.41 Aligned_cols=245 Identities=20% Similarity=0.258 Sum_probs=160.5
Q ss_pred CCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcE
Q 037951 318 NCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQG 397 (627)
Q Consensus 318 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 397 (627)
.+++|++|++++|++++..|..+..+. +|++|++++|.+++..+ +..+++|+.|++++|.+++.. ..++|+.
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~ 103 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCT-TCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCC-cCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCE
Confidence 344555555555555544444555544 56666666666554333 556666666666666665322 2356666
Q ss_pred eeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCcccc-ccccCccEEEccCC
Q 037951 398 LDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF-NISSLSVSLDLAEN 476 (627)
Q Consensus 398 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~ll~~L~l~~n 476 (627)
|++++|.+.+..+. .+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+. .++.+ ++|++++|
T Consensus 104 L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L-~~L~L~~N 179 (317)
T 3o53_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYN 179 (317)
T ss_dssp EECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTS
T ss_pred EECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC-CEEECCCC
Confidence 66666666644332 245667777777776665555666666777777777766654444443 45555 67777777
Q ss_pred ccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCc-cccc
Q 037951 477 HFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFF-GQIP 555 (627)
Q Consensus 477 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~-~~~p 555 (627)
.+.+. + ....+++|++|++++|+++ .+|..+..+++|++|++++|.++. +|..+..+++|+.|++++|++. +.+|
T Consensus 180 ~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 180 FIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp CCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred cCccc-c-cccccccCCEEECCCCcCC-cchhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 76644 2 2334788888888888888 455568888888999999888884 5667888888999999988888 6777
Q ss_pred hhcccCc-CCeeeCcCC-cccccCC
Q 037951 556 IFLEALS-LEYLNLSFN-DFEGRLP 578 (627)
Q Consensus 556 ~~~~~~~-L~~L~ls~n-~l~~~~p 578 (627)
.++...+ |+.+++++| .+.+..|
T Consensus 256 ~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 256 DFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred HHHhccccceEEECCCchhccCCch
Confidence 7777777 888888854 4555444
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.1e-27 Score=235.54 Aligned_cols=243 Identities=19% Similarity=0.185 Sum_probs=112.8
Q ss_pred CcccEEEccCcccccccchhHHhccccccEEEeeccccc-ccCccccc-------CCCCCCEEeCCCCccccccchhh--
Q 037951 320 SKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLY-GSIPSGIG-------NLVNLYSLQTEENQFTGSIPKEM-- 389 (627)
Q Consensus 320 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~~~~~~~~~~-- 389 (627)
++|+.+++++|.+ .+|..+.. .++.|++++|.+. ..++..+. ++++|++|++++|++++..|..+
T Consensus 43 ~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 4444555555554 34443333 2455555555542 22333222 45555555555555554444443
Q ss_pred cCCCCCcEeeccCCcccccCChhhhCC-----CCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccC--Cccc-
Q 037951 390 GKLLNLQGLDFGGNHFSGEIPSTLGNL-----SSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTI--PGDI- 461 (627)
Q Consensus 390 ~~l~~L~~L~L~~n~~~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~- 461 (627)
..+++|+.|++++|++++. |..+..+ ++|++|++++|++++..+..+..+++|++|++++|++.+.+ +..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 4555555555555555544 4444443 55555555555555444455555555555555555543321 1111
Q ss_pred -cccccCccEEEccCCcccc--CCC-ccccCCCCCCEEEccCCcccccCC-ccccCCCCCCEEECCCCcccccCChhccC
Q 037951 462 -FNISSLSVSLDLAENHFVG--SIP-PRIGNLKALRCFDVSNNDLSGEIP-SELGLCSSLEEIYLAENFFNGFIPSFFRT 536 (627)
Q Consensus 462 -~~~~~ll~~L~l~~n~l~~--~~~-~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~l~~ 536 (627)
..++.+ ++|++++|++.+ .++ ..+.++++|++|++++|++++..| ..+..+++|++|++++|.++ .+|..+.
T Consensus 197 ~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 197 PLKFPTL-QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp TTSCTTC-CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred hccCCCC-CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 333333 444444444431 011 112344555555555555543332 23334455555555555554 3333333
Q ss_pred CCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCccc
Q 037951 537 SRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFE 574 (627)
Q Consensus 537 l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~ 574 (627)
++|+.||+++|++.+. |. +..++ |++|++++|+++
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 4455555555555433 33 33333 555555555544
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=3.8e-29 Score=272.09 Aligned_cols=418 Identities=16% Similarity=0.103 Sum_probs=196.2
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcc---cCCc------------cccCCCCCCEEEccCccccccCCcc
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVG---KIPA------------NLSYCSRLTVLVLGNNKLVGSIPFE 140 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~---~~~~------------~~~~l~~L~~L~ls~n~l~~~~~~~ 140 (627)
+.++++.+... .....+.++++|++|+++++.... ..|. ....+++|++|++++|.+++..+..
T Consensus 46 ~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 46 RKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp CEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred eEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 46677665433 223446678899999999875321 1111 1246778888888888877666666
Q ss_pred cc-CCCCCCeeeCCCC-CCCCC-CCCCCCCCCCCCEEECCCCCCCCCCCCccC----CCCCccEEEeeCccccccCCccc
Q 037951 141 FV-SLYKLKQLALPMN-NLTGG-IPPFLGNLTSLEVVSLAGNPFGGNIPDSLG----QLKELKTLGIGGNNLSGSIPPSI 213 (627)
Q Consensus 141 l~-~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~----~l~~L~~L~l~~n~~~~~~~~~l 213 (627)
+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+. .+++|++|++++|. . .
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~-~----- 197 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-S-E----- 197 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-S-C-----
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-C-c-----
Confidence 64 5788888888877 33321 233334677788888877776544333332 44566666666554 1 0
Q ss_pred cCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeeccccc-------ccccCccCc
Q 037951 214 YNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNS-------FFGKLSVNF 286 (627)
Q Consensus 214 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~l 286 (627)
+.......+...+++|++|++++|...+.++..+..+++|+.++++.+. +.+. +..+
T Consensus 198 ---------------~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~l 261 (594)
T 2p1m_B 198 ---------------VSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL-SVAL 261 (594)
T ss_dssp ---------------CCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH-HHHH
T ss_pred ---------------CCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH-HHHH
Confidence 1100011111123444444444442211233344445555555543321 1111 1134
Q ss_pred CCCCCcCEE-eccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccc-cCccc
Q 037951 287 GGMKNLSYL-ILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYG-SIPSG 364 (627)
Q Consensus 287 ~~l~~L~~L-~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~ 364 (627)
.++++|+.+ .+...... .+...+..+++|++|++++|.+++.....+....++|++|++++| +.+ .++..
T Consensus 262 ~~~~~L~~Ls~~~~~~~~-------~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l 333 (594)
T 2p1m_B 262 SGCKELRCLSGFWDAVPA-------YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVL 333 (594)
T ss_dssp HTCTTCCEEECCBTCCGG-------GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH
T ss_pred hcCCCcccccCCcccchh-------hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHH
Confidence 455555555 22211100 122222344555555555555443222222212225555555554 221 11111
Q ss_pred ccCCCCCCEEeCCC---------Cccccccchhhc-CCCCCcEeeccCCcccccCChhhh-CCCCCCEEEcc--C----C
Q 037951 365 IGNLVNLYSLQTEE---------NQFTGSIPKEMG-KLLNLQGLDFGGNHFSGEIPSTLG-NLSSLYEIFLG--D----N 427 (627)
Q Consensus 365 ~~~l~~L~~L~l~~---------n~~~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~-~~~~L~~L~l~--~----n 427 (627)
...+++|+.|++.+ +.+++.....+. .+++|+.|++..|.+++.....+. .+++|+.|+++ + +
T Consensus 334 ~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 334 ASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp HHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred HHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 22345555555522 223222111221 245555555555555433333332 35555555555 2 2
Q ss_pred ccccc-----cChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccC-CCCCCEEEccCCc
Q 037951 428 NLSGV-----IPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGN-LKALRCFDVSNND 501 (627)
Q Consensus 428 ~~~~~-----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~-l~~L~~L~Ls~n~ 501 (627)
.++.. ++..+..+++|+.|++++ .+.+..+..+.. +++|++|++++|.
T Consensus 414 ~l~~~~~~~~~~~l~~~~~~L~~L~L~~--------------------------~l~~~~~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 414 YLTLEPLDIGFGAIVEHCKDLRRLSLSG--------------------------LLTDKVFEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp TTTCCCTHHHHHHHHHHCTTCCEEECCS--------------------------SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred cccCCchhhHHHHHHhhCCCccEEeecC--------------------------cccHHHHHHHHHhchhccEeeccCCC
Confidence 22211 111133444444444433 222222222222 5566666666666
Q ss_pred ccccCCccc-cCCCCCCEEECCCCcccccCCh-hccCCCCCCEEECCCCcCc
Q 037951 502 LSGEIPSEL-GLCSSLEEIYLAENFFNGFIPS-FFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 502 l~~~~~~~l-~~l~~L~~L~L~~n~i~~~~~~-~l~~l~~L~~L~ls~n~l~ 551 (627)
+++..+..+ ..+++|++|++++|.+++..+. ....+++|+.|++++|+++
T Consensus 468 i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 468 DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 654433333 4466666666666666443322 2334566666666666664
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=3.1e-27 Score=234.30 Aligned_cols=227 Identities=19% Similarity=0.201 Sum_probs=139.7
Q ss_pred CCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCc-ccCCcccc-------CCCCCCEEEccCccccccCCccc
Q 037951 70 GNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLV-GKIPANLS-------YCSRLTVLVLGNNKLVGSIPFEF 141 (627)
Q Consensus 70 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~-------~l~~L~~L~ls~n~l~~~~~~~l 141 (627)
...++|++|++++|.+ .+|..+... |++|++++|.+. ...|..+. ++++|++|++++|++++..|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3455677788888887 566655543 778888888773 44555554 67888888888888877777765
Q ss_pred --cCCCCCCeeeCCCCCCCCCCCCCCCCC-----CCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCcccccc--CCcc
Q 037951 142 --VSLYKLKQLALPMNNLTGGIPPFLGNL-----TSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGS--IPPS 212 (627)
Q Consensus 142 --~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~ 212 (627)
..+++|++|++++|.+++. |..++.+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 7778888888888887765 6666655 7788888888887776667777778888888887776543 2233
Q ss_pred c--cCCCCCcEEEeecccCcc--CCChhhhhcCCCCceeccCCccccccCC-ccccCCCCCcEeecccccccccCccCcC
Q 037951 213 I--YNLSFLVIFSVSENQMHG--SLPPSLGLYFPNLKLFQTNENFFSGSIP-ISLSNASKLEYVEIASNSFFGKLSVNFG 287 (627)
Q Consensus 213 l--~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 287 (627)
+ ..+++|+.|++++|.+.+ .++..+...+++|++|++++|.+++..| ..+..+++|++|++++|.+. .+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 3 667777777777777652 2222332334555555555555544332 22233444444444444443 2222222
Q ss_pred CCCCcCEEeccCccCCC
Q 037951 288 GMKNLSYLILEYNNLGS 304 (627)
Q Consensus 288 ~l~~L~~L~l~~n~l~~ 304 (627)
++|++|++++|.+++
T Consensus 274 --~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDR 288 (312)
T ss_dssp --SEEEEEECCSSCCCS
T ss_pred --CCceEEECCCCCCCC
Confidence 344444444444433
No 67
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=1.8e-28 Score=266.76 Aligned_cols=360 Identities=16% Similarity=0.133 Sum_probs=224.5
Q ss_pred ccCCCCCCCEEECCCCCCcc---cCCcc------------cCCCCCCCEEeCCCCcCcccCCcccc-CCCCCCEEEccCc
Q 037951 68 QIGNLSFLREINLMNNTIQG---EIPLE------------FGRLRRLETLLLSDNSLVGKIPANLS-YCSRLTVLVLGNN 131 (627)
Q Consensus 68 ~l~~l~~L~~L~Ls~~~~~~---~~~~~------------~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~ls~n 131 (627)
.+.++++|++|+++++.... ..|.. ...+++|++|++++|.+++..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 45678899999999975321 11211 24678999999999998876666665 7899999999999
Q ss_pred -ccccc-CCccccCCCCCCeeeCCCCCCCCCCCCC----CCCCCCCCEEECCCCCCCCCCCCc----cCCCCCccEEEee
Q 037951 132 -KLVGS-IPFEFVSLYKLKQLALPMNNLTGGIPPF----LGNLTSLEVVSLAGNPFGGNIPDS----LGQLKELKTLGIG 201 (627)
Q Consensus 132 -~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~L~~n~~~~~~~~~----l~~l~~L~~L~l~ 201 (627)
.++.. ++..+..+++|++|++++|.+++..+.. ...+++|++|++++|. ....... +..+++|++|+++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~ 219 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLN 219 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECC
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecC
Confidence 55432 4445568999999999999987654433 3477899999999987 2111122 2346889999998
Q ss_pred CccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEe-ecccccccc
Q 037951 202 GNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYV-EIASNSFFG 280 (627)
Q Consensus 202 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L-~l~~~~~~~ 280 (627)
+|.....++..+..+++|+.|++..+... +..+.+.+ ++..+.++++|+.+ .+.+... .
T Consensus 220 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~------------------~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~ 279 (594)
T 2p1m_B 220 RAVPLEKLATLLQRAPQLEELGTGGYTAE------------------VRPDVYSG-LSVALSGCKELRCLSGFWDAVP-A 279 (594)
T ss_dssp TTSCHHHHHHHHHHCTTCSEEECSBCCCC------------------CCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-G
T ss_pred CCCcHHHHHHHHhcCCcceEcccccccCc------------------cchhhHHH-HHHHHhcCCCcccccCCcccch-h
Confidence 88332235666677788888876544320 11111111 22244556666666 3332211 2
Q ss_pred cCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeec------
Q 037951 281 KLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGT------ 354 (627)
Q Consensus 281 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~------ 354 (627)
.++..+..+++|++|++++|.++.. .+...+..+++|++|++++| +++.....+....++|++|++.+
T Consensus 280 ~l~~~~~~~~~L~~L~L~~~~l~~~-----~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~ 353 (594)
T 2p1m_B 280 YLPAVYSVCSRLTTLNLSYATVQSY-----DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVM 353 (594)
T ss_dssp GGGGGHHHHTTCCEEECTTCCCCHH-----HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCS
T ss_pred hHHHHHHhhCCCCEEEccCCCCCHH-----HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCccccc
Confidence 2233334566777777777764431 12233456777888888777 44333333333233788888743
Q ss_pred ---ccccccCcccc-cCCCCCCEEeCCCCccccccchhhc-CCCCCcEeecc--C----Cccccc-----CChhhhCCCC
Q 037951 355 ---NQLYGSIPSGI-GNLVNLYSLQTEENQFTGSIPKEMG-KLLNLQGLDFG--G----NHFSGE-----IPSTLGNLSS 418 (627)
Q Consensus 355 ---n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~--~----n~~~~~-----~~~~~~~~~~ 418 (627)
+.+++.....+ ..+++|+.|.+..+.+++.....+. .+++|+.|+++ + +.+++. ++..+..+++
T Consensus 354 ~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 433 (594)
T 2p1m_B 354 EPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433 (594)
T ss_dssp SCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT
T ss_pred ccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC
Confidence 33433222222 2478888888877777765555554 47888888888 3 444421 1223567889
Q ss_pred CCEEEccCCccccccChhhcC-CCCCCEEECcCCcCcc
Q 037951 419 LYEIFLGDNNLSGVIPSSLGN-LERLAILEMFANELSG 455 (627)
Q Consensus 419 L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~~n~l~~ 455 (627)
|++|++++ .++......+.. +++|+.|++++|.+.+
T Consensus 434 L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~ 470 (594)
T 2p1m_B 434 LRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSD 470 (594)
T ss_dssp CCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSH
T ss_pred ccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcH
Confidence 99999977 665554445544 7778888888877653
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=4.6e-25 Score=236.29 Aligned_cols=165 Identities=22% Similarity=0.297 Sum_probs=112.8
Q ss_pred CCCCCCCCCCCCCCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCC
Q 037951 35 GILNSWNDSRHFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP 114 (627)
Q Consensus 35 ~~~~~w~~~~~~c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 114 (627)
.+...|.....+|.|.+..+.+.. . ......++++|+++++.++ .+|..+. ++|++|++++|.++ .+|
T Consensus 10 ~~w~~W~~~~~~~~~~~r~~~~~~-----~---~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp 77 (622)
T 3g06_A 10 AVWSAWRRAAPAEESRGRAAVVQK-----M---RACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLP 77 (622)
T ss_dssp CHHHHHHHTCCGGGHHHHHHHHHH-----H---HHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCC
T ss_pred HHHHHHHhcCCcchhccccccCcc-----c---ccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCC
Confidence 344567666778898765431100 0 0001135889999999998 6777665 79999999999988 566
Q ss_pred ccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCC
Q 037951 115 ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKE 194 (627)
Q Consensus 115 ~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 194 (627)
. .+++|++|++++|+++ .+|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|.. +++
T Consensus 78 ~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~ 142 (622)
T 3g06_A 78 A---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPG 142 (622)
T ss_dssp C---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTT
T ss_pred C---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCC
Confidence 5 5788999999999887 4554 67888888888888874 344 56778888888888874 4443 377
Q ss_pred ccEEEeeCccccccCCccccCCCCCcEEEeecccCc
Q 037951 195 LKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMH 230 (627)
Q Consensus 195 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 230 (627)
|++|++++|.+++ +|. .+++|+.|++++|.++
T Consensus 143 L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~ 174 (622)
T 3g06_A 143 LQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLT 174 (622)
T ss_dssp CCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred CCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCC
Confidence 7777777777763 332 2345556666665554
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.7e-26 Score=229.50 Aligned_cols=264 Identities=18% Similarity=0.165 Sum_probs=214.1
Q ss_pred cccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeec
Q 037951 321 KLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDF 400 (627)
Q Consensus 321 ~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 400 (627)
.++..+++.+.+.......+.. .++|++|++++|.+++..+..+..+++|+.|++++|.+++..+ +..+++|+.|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQS-AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTT-GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHhcc-CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 4566677777776444333333 4489999999999998888889999999999999999986554 889999999999
Q ss_pred cCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCcccc
Q 037951 401 GGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVG 480 (627)
Q Consensus 401 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~ 480 (627)
++|.+++.. ..++|++|++++|.+++..+. .+++|+.|++++|.+.+..+..+..++.+ ++|++++|.+.+
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~ 158 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDT 158 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSE-EEEECTTSCCCE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCC-CEEECCCCCCCc
Confidence 999988432 348999999999999876544 46889999999999997767778888888 999999999998
Q ss_pred CCCccc-cCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcc
Q 037951 481 SIPPRI-GNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLE 559 (627)
Q Consensus 481 ~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~ 559 (627)
..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|.+++..+ .+..+++|+.|++++|.+. .+|..+.
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~ 234 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALR 234 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred ccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhh
Confidence 777666 4789999999999999844 3 33458999999999999997544 4889999999999999998 5777777
Q ss_pred cCc-CCeeeCcCCccc-ccCCC-CCccCCCCccccccCCCCccc
Q 037951 560 ALS-LEYLNLSFNDFE-GRLPT-RGIFANASAISVGGCNRLCGG 600 (627)
Q Consensus 560 ~~~-L~~L~ls~n~l~-~~~p~-~~~~~~l~~l~~~~n~~l~~~ 600 (627)
.++ |+.|++++|++. +.+|. ...++.++.+++.+|+.+.|.
T Consensus 235 ~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred cCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 777 999999999998 55553 244567788888866555443
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.7e-25 Score=235.13 Aligned_cols=235 Identities=21% Similarity=0.260 Sum_probs=139.6
Q ss_pred CCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEe
Q 037951 319 CSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGL 398 (627)
Q Consensus 319 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 398 (627)
+++|+.|++++|.+++..|..+..+. +|++|++++|.+++..+ +..+++|+.|++++|.+++.. ..++|+.|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 34566666666666555555555554 56666666666654443 556666666666666665322 12566666
Q ss_pred eccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCcccc-ccccCccEEEccCCc
Q 037951 399 DFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIF-NISSLSVSLDLAENH 477 (627)
Q Consensus 399 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-~~~~ll~~L~l~~n~ 477 (627)
++++|.+.+..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .++.+ ++|++++|.
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L-~~L~Ls~N~ 180 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYNF 180 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTSC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc-cEEecCCCc
Confidence 6666666544332 245666666666666655555566666666666666666655555554 45555 666666666
Q ss_pred cccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCc-cccch
Q 037951 478 FVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFF-GQIPI 556 (627)
Q Consensus 478 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~-~~~p~ 556 (627)
+.+.. ....+++|++|++++|.+++ +|..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|.
T Consensus 181 l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~ 256 (487)
T 3oja_A 181 IYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRD 256 (487)
T ss_dssp CCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHH
T ss_pred ccccc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHH
Confidence 65442 12346667777777777763 34446666777777777777764 4555666677777777777766 45555
Q ss_pred hcccCc-CCeeeCc
Q 037951 557 FLEALS-LEYLNLS 569 (627)
Q Consensus 557 ~~~~~~-L~~L~ls 569 (627)
++...+ |+.++++
T Consensus 257 ~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 257 FFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHHhCCCCcEEecc
Confidence 555555 6666654
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.4e-25 Score=233.93 Aligned_cols=240 Identities=19% Similarity=0.156 Sum_probs=199.5
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
+|+.|++++|.+++..|..+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 79999999999998888899999999999999999987665 889999999999999988432 33899999999
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCcccc-CCCCCCEEEccCCcccc
Q 037951 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIG-NLKALRCFDVSNNDLSG 504 (627)
Q Consensus 426 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~ 504 (627)
+|.+++..+. .+++|+.|++++|.+.+..|..+..++.+ ++|++++|.+.+..|..+. .+++|++|++++|.+++
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSE-EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCC-CEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 9999876553 46889999999999998878888888888 8999999999988887776 78999999999999985
Q ss_pred cCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCccc-ccCCC-CC
Q 037951 505 EIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFE-GRLPT-RG 581 (627)
Q Consensus 505 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~-~~~p~-~~ 581 (627)
. | ....+++|++|+|++|.+++..|. +..+++|+.|++++|.+.+ +|..+..++ |+.|++++|++. +.+|. ..
T Consensus 184 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 V-K-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp E-E-CCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred c-c-ccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 5 3 244689999999999999976554 8889999999999999995 777777777 999999999998 44442 23
Q ss_pred ccCCCCccccc-------cCCCCccc
Q 037951 582 IFANASAISVG-------GCNRLCGG 600 (627)
Q Consensus 582 ~~~~l~~l~~~-------~n~~l~~~ 600 (627)
.++.++.+.+. ++|..|+.
T Consensus 260 ~l~~L~~l~~~~~~~~~~~~~~~c~~ 285 (487)
T 3oja_A 260 KNQRVQTVAKQTVKKLTGQNEEECTV 285 (487)
T ss_dssp TCHHHHHHHHHHHHHHTSSSSCCCSS
T ss_pred hCCCCcEEeccccccccCCCcccccC
Confidence 34556666665 66666654
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=7.9e-24 Score=205.14 Aligned_cols=218 Identities=20% Similarity=0.229 Sum_probs=151.9
Q ss_pred CCCCCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCC
Q 037951 44 RHFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRL 123 (627)
Q Consensus 44 ~~~c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 123 (627)
.+.|.|.|+.|+... ..+++++++++++ .+|..+. +++++|++++|+++...+..|.++++|
T Consensus 2 ~~~C~~~~~~C~c~~---------------~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L 63 (270)
T 2o6q_A 2 EALCKKDGGVCSCNN---------------NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKL 63 (270)
T ss_dssp CCCBGGGTCSBEEET---------------TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTC
T ss_pred CccCCCCCCCCEeCC---------------CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCC
Confidence 357999999884432 3567888888887 4665554 578888888888886666678888888
Q ss_pred CEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCc
Q 037951 124 TVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGN 203 (627)
Q Consensus 124 ~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 203 (627)
++|++++|.++...+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 64 ~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 143 (270)
T 2o6q_A 64 RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143 (270)
T ss_dssp CEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence 88888888887555556677888888888888887666666777888888888888887766667777788888888888
Q ss_pred cccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCc
Q 037951 204 NLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLS 283 (627)
Q Consensus 204 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 283 (627)
.+++..+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..+
T Consensus 144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------------------~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPE-------------------------GAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------------------------TTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cCCccCHhHccCCcccceeEecCCcCcEeCh-------------------------hHhccCCCcCEEECCCCcCCcCCH
Confidence 7775544556667777777777766653222 223445556666666665555555
Q ss_pred cCcCCCCCcCEEeccCccCCC
Q 037951 284 VNFGGMKNLSYLILEYNNLGS 304 (627)
Q Consensus 284 ~~l~~l~~L~~L~l~~n~l~~ 304 (627)
..+..+++|+.|++++|.+..
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 199 GAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCBCC
T ss_pred HHhccccCCCEEEecCCCeeC
Confidence 555666666666666665543
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.7e-23 Score=224.23 Aligned_cols=265 Identities=29% Similarity=0.293 Sum_probs=147.5
Q ss_pred CCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEEC
Q 037951 97 RRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSL 176 (627)
Q Consensus 97 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 176 (627)
.++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 46899999999988 6777665 78999999999888 4554 5688888888888887 3454 6688888888
Q ss_pred CCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccc
Q 037951 177 AGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSG 256 (627)
Q Consensus 177 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~ 256 (627)
++|.+++ +|. .+++|++|++++|.++. +|.. +++|+.|++++|.+.+ +|. .+
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~----~~--------------- 160 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA----LP--------------- 160 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC----CC---------------
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC----cc---------------
Confidence 8888874 333 45778888888887763 4442 3566666666666552 221 12
Q ss_pred cCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCccccccc
Q 037951 257 SIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGAL 336 (627)
Q Consensus 257 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 336 (627)
++|+.|++++|.+.+.. ..+++|+.|++++|.++.++. ..++|+.|++++|.++ .+
T Consensus 161 ---------~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~----------~~~~L~~L~L~~N~l~-~l 216 (622)
T 3g06_A 161 ---------SELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT----------LPSELYKLWAYNNRLT-SL 216 (622)
T ss_dssp ---------TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCS-SC
T ss_pred ---------CCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC----------ccchhhEEECcCCccc-cc
Confidence 33444444444443321 223445555555554443211 1234445555555444 22
Q ss_pred chhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCC
Q 037951 337 PHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNL 416 (627)
Q Consensus 337 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 416 (627)
|.. .++|+.|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+
T Consensus 217 ~~~----~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l 283 (622)
T 3g06_A 217 PAL----PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHL 283 (622)
T ss_dssp CCC----CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGS
T ss_pred CCC----CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhc
Confidence 211 1244455555444442 22 22344555555555444 2222 2344555555555444 334444444
Q ss_pred CCCCEEEccCCccccccChhh
Q 037951 417 SSLYEIFLGDNNLSGVIPSSL 437 (627)
Q Consensus 417 ~~L~~L~l~~n~~~~~~~~~l 437 (627)
++|+.|++++|++++..+..+
T Consensus 284 ~~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 284 SSETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp CTTCEEECCSCCCCHHHHHHH
T ss_pred cccCEEEecCCCCCCcCHHHH
Confidence 555555555555444444333
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.4e-23 Score=204.32 Aligned_cols=207 Identities=19% Similarity=0.218 Sum_probs=117.2
Q ss_pred CCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECc
Q 037951 370 NLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMF 449 (627)
Q Consensus 370 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 449 (627)
+|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444445555555555555555554444445555555555555555554444555555555555555
Q ss_pred CCcCcccCCccccccccCccEEEccCCccccC-CCccccCCCCCCEEEccCCcccccCCccccCCCCCC----EEECCCC
Q 037951 450 ANELSGTIPGDIFNISSLSVSLDLAENHFVGS-IPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLE----EIYLAEN 524 (627)
Q Consensus 450 ~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~----~L~L~~n 524 (627)
+|.+.+..+..+..++.+ ++|++++|.+.+. +|..+.++++|++|++++|++++..+..+..+++|+ +|++++|
T Consensus 109 ~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTL-KELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TSCCCCSTTCCCTTCTTC-CEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCccccCchhcccCCCC-CEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 555553333344455555 5555555555542 355666666666667766666655455555555555 6667777
Q ss_pred cccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCC
Q 037951 525 FFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLP 578 (627)
Q Consensus 525 ~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p 578 (627)
.+++..+..+.. .+|+.|++++|.+.+..+..+..++ |++|++++|++.+..|
T Consensus 188 ~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 666554444433 3577777777776654444455555 7777777777666554
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1.1e-23 Score=204.93 Aligned_cols=208 Identities=21% Similarity=0.212 Sum_probs=155.3
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
++++|++++|.+++..+..+.++++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 56777777777766555567777777777777777776556667777777777777777776666677777777777777
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCcc-cCCccccccccCccEEEccCCccccCCCccccCCCCCC----EEEccCC
Q 037951 426 DNNLSGVIPSSLGNLERLAILEMFANELSG-TIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALR----CFDVSNN 500 (627)
Q Consensus 426 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~----~L~Ls~n 500 (627)
+|.+.+..+..+..+++|++|++++|.+.+ .+|..+..++.+ ++|++++|++.+..+..+..+++|+ +|++++|
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL-EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC-CEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCC-CEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 777776555567777777777777777764 256777777777 7788888877766666666555565 8999999
Q ss_pred cccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccc
Q 037951 501 DLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP 555 (627)
Q Consensus 501 ~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 555 (627)
.+++..+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|++....|
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 99855454444 4589999999999998777778899999999999999986544
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.8e-22 Score=195.53 Aligned_cols=181 Identities=19% Similarity=0.228 Sum_probs=101.0
Q ss_pred CCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECc
Q 037951 370 NLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMF 449 (627)
Q Consensus 370 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 449 (627)
+++.|++++|++++..+..+..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 45555555555544433445555555555555555553333344555555555555555554444444555555555555
Q ss_pred CCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCccccc
Q 037951 450 ANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGF 529 (627)
Q Consensus 450 ~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~ 529 (627)
+|.+.+..+..+..++++ ++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++.
T Consensus 118 ~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKL-TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp SSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCccCeeCHHHhCcCcCC-CEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 555543333334444444 4555555555444444456666677777777766644444566667777777777777665
Q ss_pred CChhccCCCCCCEEECCCCcCc
Q 037951 530 IPSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 530 ~~~~l~~l~~L~~L~ls~n~l~ 551 (627)
.+..+..+++|+.|++++|++.
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBC
T ss_pred CHHHhccccCCCEEEecCCCee
Confidence 5555666677777777777664
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.9e-22 Score=195.73 Aligned_cols=198 Identities=20% Similarity=0.181 Sum_probs=103.4
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
++++++++++.++ .+|..+. ++++.|++++|.+++..+..+..+++|+.|++++|.+++..+ ...+++|++|+++
T Consensus 11 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECC
T ss_pred CccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECC
Confidence 4556666666555 3333332 455666666666555555555556666666666665553222 1445556666666
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc
Q 037951 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE 505 (627)
Q Consensus 426 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 505 (627)
+|.++ .+|..+..+++|++|++++|++.+..+..+..++.+ ++|++++|++.+..+..|..+++|++|++++|++++.
T Consensus 86 ~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 86 HNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGEL-QELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp SSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTC-CEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCC-CEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence 65555 344455555555555555555553333444455555 5555555555544444445555555555555555533
Q ss_pred CCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCc
Q 037951 506 IPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 506 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~ 551 (627)
.+..+..+++|+.|++++|.++ .+|..+....+|+.+++++|++.
T Consensus 164 ~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 164 PAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 3333455555555555555555 33444444455555555555543
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.3e-22 Score=195.25 Aligned_cols=203 Identities=19% Similarity=0.232 Sum_probs=176.1
Q ss_pred ccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCC
Q 037951 365 IGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLA 444 (627)
Q Consensus 365 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 444 (627)
+.+++++++++++++.++ .+|..+. ++++.|++++|.+++..+..|..+++|++|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 567889999999999998 5565553 6899999999999988888899999999999999999865442 7889999
Q ss_pred EEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCC
Q 037951 445 ILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAEN 524 (627)
Q Consensus 445 ~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n 524 (627)
+|++++|.+. .+|..+..++.+ ++|++++|++.+..+..|..+++|++|++++|++++..+..|..+++|+.|++++|
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L-~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred EEECCCCcCC-cCchhhccCCCC-CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 9999999998 788888888888 89999999999877788999999999999999998666667889999999999999
Q ss_pred cccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccc
Q 037951 525 FFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEG 575 (627)
Q Consensus 525 ~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~ 575 (627)
+++...+..|..+++|+.|++++|.+. .+|..+.... |+.+++++|++..
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 999777777888999999999999998 6666655555 9999999999864
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.8e-22 Score=195.63 Aligned_cols=221 Identities=19% Similarity=0.250 Sum_probs=161.7
Q ss_pred ccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccC
Q 037951 347 LQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGD 426 (627)
Q Consensus 347 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 426 (627)
+..+++.++.+.+. .....+++|+.|++++|.++. + ..+..+++|+.|++++|.+.+. ..+..+++|++|++++
T Consensus 21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTT
T ss_pred HHHHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCC
Confidence 33344444444322 223455667777777776652 2 2456677777777777777642 3566777777777777
Q ss_pred CccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccC
Q 037951 427 NNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEI 506 (627)
Q Consensus 427 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 506 (627)
|.+++..+..+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|++++..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 173 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL-TYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP 173 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC-CEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC
Confidence 77776666666777777777777777775555556667777 77888888777666666788899999999999998666
Q ss_pred CccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCcCCeeeCcCCcccccCCCC
Q 037951 507 PSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFNDFEGRLPTR 580 (627)
Q Consensus 507 ~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~ls~n~l~~~~p~~ 580 (627)
+..++.+++|++|++++|.+++..+..+..+++|+.|++++|++.+..| .++.++++.|.+.|.+|..
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~------~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 174 EGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP------GIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT------TTHHHHHHHHHTGGGBBCT
T ss_pred HHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc------HHHHHHHHHHhCCCcccCc
Confidence 6678889999999999999998888888899999999999998875544 3788899999999998853
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.9e-22 Score=194.21 Aligned_cols=211 Identities=22% Similarity=0.222 Sum_probs=162.9
Q ss_pred cCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCC
Q 037951 69 IGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLK 148 (627)
Q Consensus 69 l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~ 148 (627)
+..+++|+.|+++++.+.. + ..+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 4456788888888888763 3 347788888888888888874 3 3688888888888888888877777788888888
Q ss_pred eeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeeccc
Q 037951 149 QLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQ 228 (627)
Q Consensus 149 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 228 (627)
+|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 88888888887777778888888888888888887666677888888888888888886666667888888888888888
Q ss_pred CccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCC
Q 037951 229 MHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKN 291 (627)
Q Consensus 229 l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 291 (627)
+.+..+..+. .+++|+.|++++|.+.+ .+++++.++++.|.+.+.+|..++.++.
T Consensus 193 l~~~~~~~~~-~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 193 LKSVPDGVFD-RLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CSCCCTTTTT-TCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCccCHHHHh-CCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 8865444333 37788888888886653 3556778888888888777776665443
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=7e-23 Score=205.72 Aligned_cols=251 Identities=16% Similarity=0.166 Sum_probs=193.1
Q ss_pred cccEEEccCcccccccchhHHhc-cccccEEEeecccccccCcccccCCCCCCEEeCCCCccccc-cchhhcCCCCCcEe
Q 037951 321 KLQVLSLGGNQFRGALPHSIANL-SSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGS-IPKEMGKLLNLQGL 398 (627)
Q Consensus 321 ~L~~L~l~~n~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L 398 (627)
.++.++++++.+. +..+... .+.++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|+.|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777777665 3334433 13788888888888766555 55788999999999988755 77778889999999
Q ss_pred eccCCcccccCChhhhCCCCCCEEEccCC-ccccc-cChhhcCCCCCCEEECcCC-cCccc-CCccccccc-cCccEEEc
Q 037951 399 DFGGNHFSGEIPSTLGNLSSLYEIFLGDN-NLSGV-IPSSLGNLERLAILEMFAN-ELSGT-IPGDIFNIS-SLSVSLDL 473 (627)
Q Consensus 399 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~-~ll~~L~l 473 (627)
++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+.+. ++..+..++ .+ ++|++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L-~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI-TQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC-CEEEC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC-CEEEe
Confidence 99999888777788888999999999999 57653 5666788899999999999 77753 566677777 77 89999
Q ss_pred cCCc--cc-cCCCccccCCCCCCEEEccCCc-ccccCCccccCCCCCCEEECCCCc-ccccCChhccCCCCCCEEECCCC
Q 037951 474 AENH--FV-GSIPPRIGNLKALRCFDVSNND-LSGEIPSELGLCSSLEEIYLAENF-FNGFIPSFFRTSRGIRKVDLSRN 548 (627)
Q Consensus 474 ~~n~--l~-~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~L~ls~n 548 (627)
++|. +. +.++..+.++++|++|++++|. +++..+..+..+++|++|++++|. ++......+..+++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 9994 44 3455667789999999999999 777778889999999999999995 43333346788999999999999
Q ss_pred cCccccchhcccC-c-CCeeeCcCCcccccCCCC
Q 037951 549 NFFGQIPIFLEAL-S-LEYLNLSFNDFEGRLPTR 580 (627)
Q Consensus 549 ~l~~~~p~~~~~~-~-L~~L~ls~n~l~~~~p~~ 580 (627)
+.. ..+... . +..|++++|.+++..|..
T Consensus 283 -i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 283 -VPD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp -SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred -cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 332 123333 3 888999999999988853
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.1e-23 Score=215.55 Aligned_cols=188 Identities=18% Similarity=0.256 Sum_probs=100.3
Q ss_pred cCCCCCcEeeccCCcccc----cCChhhhCCCCCCEEEccCCccccccChhhc----CC---------CCCCEEECcCCc
Q 037951 390 GKLLNLQGLDFGGNHFSG----EIPSTLGNLSSLYEIFLGDNNLSGVIPSSLG----NL---------ERLAILEMFANE 452 (627)
Q Consensus 390 ~~l~~L~~L~L~~n~~~~----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~----~l---------~~L~~L~l~~n~ 452 (627)
..+++|+.|++++|.+.+ .++..+..+++|++|++++|.++...+..+. .+ ++|++|++++|+
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 344555555555555543 2333444455555555555555432222222 22 455555555555
Q ss_pred Cc-ccCC---ccccccccCccEEEccCCcccc-----CCCccccCCCCCCEEEccCCccc----ccCCccccCCCCCCEE
Q 037951 453 LS-GTIP---GDIFNISSLSVSLDLAENHFVG-----SIPPRIGNLKALRCFDVSNNDLS----GEIPSELGLCSSLEEI 519 (627)
Q Consensus 453 l~-~~~~---~~~~~~~~ll~~L~l~~n~l~~-----~~~~~l~~l~~L~~L~Ls~n~l~----~~~~~~l~~l~~L~~L 519 (627)
+. +.++ ..+..++.+ ++|++++|++.. ..+..+..+++|++|++++|.++ ..+|..+..+++|++|
T Consensus 171 l~~~~~~~l~~~l~~~~~L-~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLL-HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTC-CEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCc-CEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 54 2222 233344444 555555555541 12224556666777777777664 3456666666677777
Q ss_pred ECCCCccccc----CChhccC--CCCCCEEECCCCcCcc----ccchhc-ccCc-CCeeeCcCCcccccCC
Q 037951 520 YLAENFFNGF----IPSFFRT--SRGIRKVDLSRNNFFG----QIPIFL-EALS-LEYLNLSFNDFEGRLP 578 (627)
Q Consensus 520 ~L~~n~i~~~----~~~~l~~--l~~L~~L~ls~n~l~~----~~p~~~-~~~~-L~~L~ls~n~l~~~~p 578 (627)
+|++|.+++. ++..+.. +++|+.|++++|.+.+ .+|..+ ..++ |++|++++|++.+..|
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 7777766654 3444433 6667777777776665 355555 3334 7777777776665443
No 83
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=1.6e-21 Score=186.64 Aligned_cols=184 Identities=24% Similarity=0.227 Sum_probs=135.8
Q ss_pred CCCccccee-------ecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCcccc
Q 037951 46 FCEWEGITC-------DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLS 118 (627)
Q Consensus 46 ~c~~~~~~c-------~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 118 (627)
|+.|.|..| +++++.++.. |..+. +++++|++++|.+.+..+..|.++++|++|++++|.+++..+..|.
T Consensus 4 Cp~~~gC~C~~~~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 80 (251)
T 3m19_A 4 CETVTGCTCNEGKKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80 (251)
T ss_dssp CHHHHSSEEEGGGTEEECTTCCCSSC-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT
T ss_pred CCCCCceEcCCCCeEEecCCCCcccc-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhc
Confidence 456666666 4566666543 33333 5778888888888776677778888888888888888777777777
Q ss_pred CCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEE
Q 037951 119 YCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTL 198 (627)
Q Consensus 119 ~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 198 (627)
++++|++|++++|+++...+..|..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|
T Consensus 81 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 81 DLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEE
Confidence 88888888888888876666777778888888888888876666667778888888888888876666677777888888
Q ss_pred EeeCccccccCCccccCCCCCcEEEeecccCccC
Q 037951 199 GIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGS 232 (627)
Q Consensus 199 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 232 (627)
++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 161 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 161 SLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred ECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 8888887766666777777788888887777644
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=7.8e-24 Score=216.77 Aligned_cols=189 Identities=17% Similarity=0.221 Sum_probs=138.6
Q ss_pred cCCCCCCEEeCCCCcccc----ccchhhcCCCCCcEeeccCCcccccCChhh----hCC---------CCCCEEEccCCc
Q 037951 366 GNLVNLYSLQTEENQFTG----SIPKEMGKLLNLQGLDFGGNHFSGEIPSTL----GNL---------SSLYEIFLGDNN 428 (627)
Q Consensus 366 ~~l~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~----~~~---------~~L~~L~l~~n~ 428 (627)
..+++|++|++++|.++. .++..+..+++|+.|++++|.++...+..+ ..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 567777777777777775 356667777778888888877764333333 223 788888888887
Q ss_pred cc-cccC---hhhcCCCCCCEEECcCCcCcc-----cCCccccccccCccEEEccCCccc----cCCCccccCCCCCCEE
Q 037951 429 LS-GVIP---SSLGNLERLAILEMFANELSG-----TIPGDIFNISSLSVSLDLAENHFV----GSIPPRIGNLKALRCF 495 (627)
Q Consensus 429 ~~-~~~~---~~l~~l~~L~~L~l~~n~l~~-----~~~~~~~~~~~ll~~L~l~~n~l~----~~~~~~l~~l~~L~~L 495 (627)
++ ...+ ..+..+++|+.|++++|.+.. ..+..+..++.+ ++|++++|.+. +.+|..+..+++|++|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L-~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQEL-KVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTC-CEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCc-cEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 76 2333 356677788888888887762 223356667777 78888888875 4566778888999999
Q ss_pred EccCCccccc----CCccccC--CCCCCEEECCCCcccc----cCChhc-cCCCCCCEEECCCCcCccccc
Q 037951 496 DVSNNDLSGE----IPSELGL--CSSLEEIYLAENFFNG----FIPSFF-RTSRGIRKVDLSRNNFFGQIP 555 (627)
Q Consensus 496 ~Ls~n~l~~~----~~~~l~~--l~~L~~L~L~~n~i~~----~~~~~l-~~l~~L~~L~ls~n~l~~~~p 555 (627)
++++|.+++. ++..+.. +++|++|+|++|.+++ .+|..+ .++++|+.|++++|++.+..+
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 9999998855 5566643 8999999999999998 477776 568999999999999987664
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=4.3e-23 Score=209.03 Aligned_cols=229 Identities=17% Similarity=0.192 Sum_probs=105.9
Q ss_pred ccEEEeecccccccCc----ccccCCC-CCCEEeCCCCccccccchhhcCC-----CCCcEeeccCCcccccCChh----
Q 037951 347 LQILVLGTNQLYGSIP----SGIGNLV-NLYSLQTEENQFTGSIPKEMGKL-----LNLQGLDFGGNHFSGEIPST---- 412 (627)
Q Consensus 347 L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~---- 412 (627)
|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|+.|++++|.+++..+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 4444444444443333 3334444 45555555555444333333332 45555555555554333332
Q ss_pred hhCC-CCCCEEEccCCccccccChhhc----C-CCCCCEEECcCCcCcccCC----ccccccc-cCccEEEccCCccccC
Q 037951 413 LGNL-SSLYEIFLGDNNLSGVIPSSLG----N-LERLAILEMFANELSGTIP----GDIFNIS-SLSVSLDLAENHFVGS 481 (627)
Q Consensus 413 ~~~~-~~L~~L~l~~n~~~~~~~~~l~----~-l~~L~~L~l~~n~l~~~~~----~~~~~~~-~ll~~L~l~~n~l~~~ 481 (627)
+..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+.+... ..+.... .+ ++|++++|++.+.
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L-~~L~Ls~n~l~~~ 182 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV-NSLNLRGNNLASK 182 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC-CEEECTTSCGGGS
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc-cEeeecCCCCchh
Confidence 2222 4555555555555433332221 2 2355555555555543221 1112222 33 5555555555544
Q ss_pred CCcc----ccCC-CCCCEEEccCCccccc----CCccccC-CCCCCEEECCCCcccccCC----hhccCCCCCCEEECCC
Q 037951 482 IPPR----IGNL-KALRCFDVSNNDLSGE----IPSELGL-CSSLEEIYLAENFFNGFIP----SFFRTSRGIRKVDLSR 547 (627)
Q Consensus 482 ~~~~----l~~l-~~L~~L~Ls~n~l~~~----~~~~l~~-l~~L~~L~L~~n~i~~~~~----~~l~~l~~L~~L~ls~ 547 (627)
.+.. +..+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 183 ~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~ 262 (362)
T 3goz_A 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEH
T ss_pred hHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEecc
Confidence 3322 2233 3666666666666531 3334433 3466666666666655433 2234556666666666
Q ss_pred CcCcc-------ccchhcccCc-CCeeeCcCCccccc
Q 037951 548 NNFFG-------QIPIFLEALS-LEYLNLSFNDFEGR 576 (627)
Q Consensus 548 n~l~~-------~~p~~~~~~~-L~~L~ls~n~l~~~ 576 (627)
|.+.+ .++..+...+ |+.||+++|++.+.
T Consensus 263 n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 65322 1222333444 66666666666544
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=7.1e-22 Score=195.55 Aligned_cols=224 Identities=20% Similarity=0.216 Sum_probs=141.6
Q ss_pred CcccEEEccCcccccccchh---HHhccccccEEEeecccccccCcccc--cCCCCCCEEeCCCCccccccc----hhhc
Q 037951 320 SKLQVLSLGGNQFRGALPHS---IANLSSQLQILVLGTNQLYGSIPSGI--GNLVNLYSLQTEENQFTGSIP----KEMG 390 (627)
Q Consensus 320 ~~L~~L~l~~n~~~~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~~~ 390 (627)
..++.+.+.++.++...... +.... +|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 45777888777665321111 11222 68899999998888888777 788888888888888876443 3345
Q ss_pred CCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccc--c--ChhhcCCCCCCEEECcCCcCcccCCcc----cc
Q 037951 391 KLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGV--I--PSSLGNLERLAILEMFANELSGTIPGD----IF 462 (627)
Q Consensus 391 ~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~~----~~ 462 (627)
.+++|+.|++++|.+.+..+..+..+++|++|++++|++.+. . +..+..+++|++|++++|.+. .++.. +.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHh
Confidence 678888888888888877777788888888888888886542 1 222356777888888887775 22221 23
Q ss_pred ccccCccEEEccCCccccCCCccccCC---CCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCC
Q 037951 463 NISSLSVSLDLAENHFVGSIPPRIGNL---KALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRG 539 (627)
Q Consensus 463 ~~~~ll~~L~l~~n~l~~~~~~~l~~l---~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~ 539 (627)
.+..+ ++|++++|++.+..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++
T Consensus 222 ~l~~L-~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~ 295 (310)
T 4glp_A 222 AGVQP-HSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPE 295 (310)
T ss_dssp HTCCC-SSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred cCCCC-CEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence 34455 566666666655545444444 45666666666665 4454443 4566666666655543 22 344555
Q ss_pred CCEEECCCCcCc
Q 037951 540 IRKVDLSRNNFF 551 (627)
Q Consensus 540 L~~L~ls~n~l~ 551 (627)
|+.|++++|+++
T Consensus 296 L~~L~L~~N~l~ 307 (310)
T 4glp_A 296 VDNLTLDGNPFL 307 (310)
T ss_dssp CSCEECSSTTTS
T ss_pred ccEEECcCCCCC
Confidence 555555555554
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.1e-22 Score=205.89 Aligned_cols=263 Identities=16% Similarity=0.172 Sum_probs=151.0
Q ss_pred EeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCC-cccEEEccCcccccccchhHHhc----c
Q 037951 270 YVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCS-KLQVLSLGGNQFRGALPHSIANL----S 344 (627)
Q Consensus 270 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~~----~ 344 (627)
.++++.|.+.+.++..+...++|++|++++|.++..... .+...+..++ +|++|++++|.+++..+..+... .
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTV--ELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHH--HHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHH--HHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 356777777777776666666688888888877764321 2224566666 78888888887776666666554 1
Q ss_pred ccccEEEeecccccccCcccc----cCC-CCCCEEeCCCCccccccchhh----cC-CCCCcEeeccCCcccccCC----
Q 037951 345 SQLQILVLGTNQLYGSIPSGI----GNL-VNLYSLQTEENQFTGSIPKEM----GK-LLNLQGLDFGGNHFSGEIP---- 410 (627)
Q Consensus 345 ~~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~~~~~~~~~~----~~-l~~L~~L~L~~n~~~~~~~---- 410 (627)
++|++|++++|.+++..+..+ ..+ ++|+.|++++|.+++..+..+ .. .++|+.|++++|.+++...
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 367777777776665444422 223 566666666666654443332 22 2456666666666553222
Q ss_pred hhhhCCC-CCCEEEccCCccccccChhh----cCC-CCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCc
Q 037951 411 STLGNLS-SLYEIFLGDNNLSGVIPSSL----GNL-ERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPP 484 (627)
Q Consensus 411 ~~~~~~~-~L~~L~l~~n~~~~~~~~~l----~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~ 484 (627)
..+..++ +|++|++++|.+++..+..+ ..+ ++|++|++++|.+.+.... .++.
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~---------------------~l~~ 218 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA---------------------ELAY 218 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH---------------------HHHH
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH---------------------HHHH
Confidence 2223333 55666666655554433222 222 3555555555544421100 1222
Q ss_pred cccC-CCCCCEEEccCCcccccCC----ccccCCCCCCEEECCCCccccc-------CChhccCCCCCCEEECCCCcCcc
Q 037951 485 RIGN-LKALRCFDVSNNDLSGEIP----SELGLCSSLEEIYLAENFFNGF-------IPSFFRTSRGIRKVDLSRNNFFG 552 (627)
Q Consensus 485 ~l~~-l~~L~~L~Ls~n~l~~~~~----~~l~~l~~L~~L~L~~n~i~~~-------~~~~l~~l~~L~~L~ls~n~l~~ 552 (627)
.+.. .++|++|++++|.+++..+ ..+..+++|++|++++|.+... ++..+..+++|+.||+++|.+..
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 3333 3477777777777764333 2345667788888888874433 23456677888888888888876
Q ss_pred ccc
Q 037951 553 QIP 555 (627)
Q Consensus 553 ~~p 555 (627)
..+
T Consensus 299 ~~~ 301 (362)
T 3goz_A 299 SHS 301 (362)
T ss_dssp GGC
T ss_pred cch
Confidence 544
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=4.6e-21 Score=183.44 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=94.9
Q ss_pred CCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEc
Q 037951 394 NLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDL 473 (627)
Q Consensus 394 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l 473 (627)
+++.|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..++.+ ++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL-DKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEEC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC-CEEEc
Confidence 34444444444443333344444444444444444444434444444444444444444443222333344444 45555
Q ss_pred cCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccc
Q 037951 474 AENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQ 553 (627)
Q Consensus 474 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~ 553 (627)
++|++.+..+..+..+++|++|++++|++++..+..++.+++|++|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 55555544445567778888888888888755555688888888888888888877777788888888888888888754
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.8e-21 Score=185.00 Aligned_cols=177 Identities=18% Similarity=0.229 Sum_probs=87.0
Q ss_pred CCCEEeCCCCccccccchhhcCCCCCcEeeccCCc-ccccCChhhhCCCCCCEEEccC-CccccccChhhcCCCCCCEEE
Q 037951 370 NLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNH-FSGEIPSTLGNLSSLYEIFLGD-NNLSGVIPSSLGNLERLAILE 447 (627)
Q Consensus 370 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~ 447 (627)
+|+.|++++|++++..+..+..+++|+.|++++|+ ++...+..|..+++|++|++++ |.+++..+..|..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444445555555555555554 4433334455555555555555 555544444555555555555
Q ss_pred CcCCcCcccCCccccccccCcc---EEEccCC-ccccCCCccccCCCCCC-EEEccCCcccccCCc-cccCCCCCCEEEC
Q 037951 448 MFANELSGTIPGDIFNISSLSV---SLDLAEN-HFVGSIPPRIGNLKALR-CFDVSNNDLSGEIPS-ELGLCSSLEEIYL 521 (627)
Q Consensus 448 l~~n~l~~~~~~~~~~~~~ll~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~-~l~~l~~L~~L~L 521 (627)
+++|.+.+ +|. +..+.++ + +|++++| .+.+..+..|..+++|+ +|++++|+++ .+|. .+.. ++|++|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L-~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYST-DIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBC-CSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEEEEEC
T ss_pred CCCCCCcc-ccc-ccccccc-ccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEc
Confidence 55555542 333 3333333 3 4444444 44433333444555555 5555555554 3332 2222 45555555
Q ss_pred CCCc-ccccCChhccCC-CCCCEEECCCCcCc
Q 037951 522 AENF-FNGFIPSFFRTS-RGIRKVDLSRNNFF 551 (627)
Q Consensus 522 ~~n~-i~~~~~~~l~~l-~~L~~L~ls~n~l~ 551 (627)
++|. ++...+..|..+ ++|+.|++++|.+.
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 5552 544444444444 55555555555554
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.8e-21 Score=183.64 Aligned_cols=197 Identities=17% Similarity=0.169 Sum_probs=141.3
Q ss_pred CCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCc-CcccCCccccCCCCCCEEEccC-ccccccCCccccCCCCCCee
Q 037951 73 SFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNS-LVGKIPANLSYCSRLTVLVLGN-NKLVGSIPFEFVSLYKLKQL 150 (627)
Q Consensus 73 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~l~~l~~L~~L 150 (627)
.++++|++++|++++..+..|.++++|++|++++|+ ++...+..|.++++|++|++++ |+++...+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 388999999999987777788889999999999996 8766666888999999999998 88887667788888888888
Q ss_pred eCCCCCCCCCCCCCCCCCCCCC---EEECCCC-CCCCCCCCccCCCCCcc-EEEeeCccccccCCccccCCCCCcEEEee
Q 037951 151 ALPMNNLTGGIPPFLGNLTSLE---VVSLAGN-PFGGNIPDSLGQLKELK-TLGIGGNNLSGSIPPSIYNLSFLVIFSVS 225 (627)
Q Consensus 151 ~l~~n~l~~~~~~~l~~l~~L~---~L~L~~n-~~~~~~~~~l~~l~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 225 (627)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..|..+++|+ +|++++|.++ .+|......++|+.|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcC
Confidence 888888875 555 77777777 8888888 77766566677777777 7777777776 444333222556666666
Q ss_pred ccc-CccCCChhhhhcCCCCceeccCCccccccCCccccCC-CCCcEeecccccccccCccCcCCCCCcCEEeccCc
Q 037951 226 ENQ-MHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNA-SKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYN 300 (627)
Q Consensus 226 ~n~-l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n 300 (627)
+|. +. +..+..+..+ ++|+.+++++|.+.+..+. .+++|+.|+++++
T Consensus 188 ~n~~l~-------------------------~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLT-------------------------VIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCC-------------------------EECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCcc-------------------------cCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 663 44 3333344555 6666666666666543332 4566666666554
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=6.2e-22 Score=195.98 Aligned_cols=223 Identities=15% Similarity=0.157 Sum_probs=118.3
Q ss_pred cccEEEeecccccccCcc---cccCCCCCCEEeCCCCccccccchhh--cCCCCCcEeeccCCcccccCC----hhhhCC
Q 037951 346 QLQILVLGTNQLYGSIPS---GIGNLVNLYSLQTEENQFTGSIPKEM--GKLLNLQGLDFGGNHFSGEIP----STLGNL 416 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~----~~~~~~ 416 (627)
.++.+.+.++.+...... .+..+++|++|++++|.+++..|..+ ..+++|+.|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 466666666655421100 11223557777777777766666665 666777777777777665433 223456
Q ss_pred CCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCccc--CCccccccccCccEEEccCCccccCCCccccCCCCCCE
Q 037951 417 SSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGT--IPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRC 494 (627)
Q Consensus 417 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~ 494 (627)
++|++|++++|.+.+..+..+..+++|++|++++|++.+. ++. +..+..+++|++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-----------------------~~~~~~l~~L~~ 201 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA-----------------------ALCPHKFPAIQN 201 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT-----------------------TSCTTSSCCCCS
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH-----------------------HHhhhcCCCCCE
Confidence 6677777777776666556666666666666666665421 110 111234455555
Q ss_pred EEccCCcccccCCc----cccCCCCCCEEECCCCcccccCChhccCC---CCCCEEECCCCcCccccchhcccCcCCeee
Q 037951 495 FDVSNNDLSGEIPS----ELGLCSSLEEIYLAENFFNGFIPSFFRTS---RGIRKVDLSRNNFFGQIPIFLEALSLEYLN 567 (627)
Q Consensus 495 L~Ls~n~l~~~~~~----~l~~l~~L~~L~L~~n~i~~~~~~~l~~l---~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~ 567 (627)
|++++|+++ .++. .++.+++|++|++++|.+++..|..+..+ ++|++|++++|.+. .+|..+. ..|++|+
T Consensus 202 L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~-~~L~~L~ 278 (310)
T 4glp_A 202 LALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP-AKLRVLD 278 (310)
T ss_dssp CBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC-SCCSCEE
T ss_pred EECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc-CCCCEEE
Confidence 555555554 2221 13444555555555555555544444443 35555555555555 3443332 2255555
Q ss_pred CcCCcccccCCCCCccCCCCccccccCC
Q 037951 568 LSFNDFEGRLPTRGIFANASAISVGGCN 595 (627)
Q Consensus 568 ls~n~l~~~~p~~~~~~~l~~l~~~~n~ 595 (627)
+++|++++. |....+++|+.+++.+|+
T Consensus 279 Ls~N~l~~~-~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 279 LSSNRLNRA-PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSCCCCSC-CCTTSCCCCSCEECSSTT
T ss_pred CCCCcCCCC-chhhhCCCccEEECcCCC
Confidence 555555532 222334555555555554
No 92
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=1.9e-22 Score=202.49 Aligned_cols=254 Identities=14% Similarity=0.161 Sum_probs=128.9
Q ss_pred CcEeecccccccccCccCcCCC--CCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccc
Q 037951 268 LEYVEIASNSFFGKLSVNFGGM--KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSS 345 (627)
Q Consensus 268 L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 345 (627)
++.++++++.+. +..+..+ ++++.+++++|.+.+... .+..+++|++|++++|.+++.
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~-------~~~~~~~L~~L~L~~~~l~~~---------- 108 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA-------EHFSPFRVQHMDLSNSVIEVS---------- 108 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCC-------SCCCCBCCCEEECTTCEECHH----------
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccch-------hhccCCCCCEEEccCCCcCHH----------
Confidence 556666665543 2223333 556666666655544221 123445555555555555433
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCC-ccccc-CChhhhCCCCCCEEE
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGN-HFSGE-IPSTLGNLSSLYEIF 423 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n-~~~~~-~~~~~~~~~~L~~L~ 423 (627)
.++..+..+++|++|++++|.+++..+..+..+++|+.|++++| .+++. ++..+..+++|++|+
T Consensus 109 --------------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~ 174 (336)
T 2ast_B 109 --------------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174 (336)
T ss_dssp --------------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEE
T ss_pred --------------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEc
Confidence 03333444445555555555544444444455555555555555 33321 333344455555555
Q ss_pred ccCC-ccccc-cChhhcCCC-CCCEEECcCC--cCc-ccCCccccccccCccEEEccCCc-cccCCCccccCCCCCCEEE
Q 037951 424 LGDN-NLSGV-IPSSLGNLE-RLAILEMFAN--ELS-GTIPGDIFNISSLSVSLDLAENH-FVGSIPPRIGNLKALRCFD 496 (627)
Q Consensus 424 l~~n-~~~~~-~~~~l~~l~-~L~~L~l~~n--~l~-~~~~~~~~~~~~ll~~L~l~~n~-l~~~~~~~l~~l~~L~~L~ 496 (627)
+++| .+++. ++..+..++ +|++|++++| .+. +.++..+..++++ ++|++++|. +.+..+..+.++++|++|+
T Consensus 175 l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L-~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 175 LSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL-VHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp CCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC-SEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred CCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCC-CEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 5555 44432 233444555 5555555555 222 2333344445555 556666655 4444445566667777777
Q ss_pred ccCCc-ccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcc
Q 037951 497 VSNND-LSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLE 559 (627)
Q Consensus 497 Ls~n~-l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~ 559 (627)
+++|. +.......+..+++|++|++++| ++......+. ..++.|++++|.+++..|..+.
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence 77773 33222234666777777777777 4332222221 2255555777777776665544
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=2.2e-20 Score=184.31 Aligned_cols=190 Identities=23% Similarity=0.359 Sum_probs=121.5
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
+|++|++++|.+.. ++ .+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+. ..+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECC
Confidence 56666666666653 33 35666677777777776664332 66677777777777776632 246667777777777
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc
Q 037951 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE 505 (627)
Q Consensus 426 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 505 (627)
+|.+++. + .+..+++|+.|++++|.+.+ ++. +..++.+ ++|++++|.+.+..+ +..+++|++|++++|.+++
T Consensus 116 ~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~- 187 (308)
T 1h6u_A 116 STQITDV-T-PLAGLSNLQVLYLDLNQITN-ISP-LAGLTNL-QYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD- 187 (308)
T ss_dssp TSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CGG-GGGCTTC-CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-
T ss_pred CCCCCCc-h-hhcCCCCCCEEECCCCccCc-Ccc-ccCCCCc-cEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc-
Confidence 7776643 2 26667777777777776653 222 5556666 667777776664322 6677777777777777763
Q ss_pred CCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCcc
Q 037951 506 IPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFG 552 (627)
Q Consensus 506 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~ 552 (627)
++. +..+++|++|++++|.+++..+ +..+++|+.|++++|++.+
T Consensus 188 ~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 188 ISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred Chh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 332 6677777777777777775542 6677777777777777753
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.2e-20 Score=184.23 Aligned_cols=206 Identities=22% Similarity=0.329 Sum_probs=172.0
Q ss_pred EeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccc
Q 037951 351 VLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLS 430 (627)
Q Consensus 351 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~ 430 (627)
.+..+.+.+.+ ....+++|+.|++++|.++. ++ .+..+++|+.|++++|.+.+.. . +..+++|++|++++|.++
T Consensus 25 ~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~~n~l~ 98 (308)
T 1h6u_A 25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELSGNPLK 98 (308)
T ss_dssp HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECCSCCCS
T ss_pred HhCCCCcCcee--cHHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEccCCcCC
Confidence 34445444322 24567899999999999984 44 5888999999999999998544 3 889999999999999998
Q ss_pred cccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccc
Q 037951 431 GVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSEL 510 (627)
Q Consensus 431 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l 510 (627)
+. ..+..+++|+.|++++|.+.+ ++ .+..++.+ ++|++++|.+.+..+ +..+++|++|++++|.+++ ++. +
T Consensus 99 ~~--~~~~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L-~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l 169 (308)
T 1h6u_A 99 NV--SAIAGLQSIKTLDLTSTQITD-VT-PLAGLSNL-QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP-L 169 (308)
T ss_dssp CC--GGGTTCTTCCEEECTTSCCCC-CG-GGTTCTTC-CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-G
T ss_pred Cc--hhhcCCCCCCEEECCCCCCCC-ch-hhcCCCCC-CEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh-h
Confidence 54 368899999999999999984 44 37888888 999999999986543 8899999999999999984 444 8
Q ss_pred cCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccc
Q 037951 511 GLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEG 575 (627)
Q Consensus 511 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~ 575 (627)
..+++|+.|++++|.+++..+ +..+++|+.|++++|.+.+..| +..++ |+.|++++|++++
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 999999999999999987644 8899999999999999996554 56666 9999999999975
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=7.4e-20 Score=169.74 Aligned_cols=181 Identities=23% Similarity=0.208 Sum_probs=134.1
Q ss_pred CCCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCE
Q 037951 46 FCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTV 125 (627)
Q Consensus 46 ~c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 125 (627)
.|.|.++.| .+++++.. |..+ .++|++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++
T Consensus 6 ~C~~~~v~c--~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 6 SCSGTTVEC--YSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80 (208)
T ss_dssp EEETTEEEC--CSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCEEEe--cCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCE
Confidence 478988876 34444432 2222 458899999999888666667888899999999999888666666788888888
Q ss_pred EEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccc
Q 037951 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNL 205 (627)
Q Consensus 126 L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 205 (627)
|++++|++++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 88888888866666678888888888888888866666678888888888888888866666677788888888888765
Q ss_pred cccCCccccCCCCCcEEEeecccCccCCChhhh
Q 037951 206 SGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLG 238 (627)
Q Consensus 206 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 238 (627)
.+ .++.|+.|++..|.++|.+|..++
T Consensus 161 ~~-------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 161 DC-------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CC-------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred ec-------CCCCHHHHHHHHHhCCceeeccCc
Confidence 42 344566666666666666665443
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.5e-19 Score=167.74 Aligned_cols=181 Identities=22% Similarity=0.196 Sum_probs=150.9
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCC
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMN 155 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 155 (627)
+.++.+++.++ .+|..+ .++|++|++++|++++..+..|.++++|++|++++|++++..+..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 56888888887 556544 469999999999999777777899999999999999999777777899999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCCh
Q 037951 156 NLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPP 235 (627)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 235 (627)
.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~--- 163 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT--- 163 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC---
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC---
Confidence 99977777789999999999999999977777789999999999999999966666688899999999999877643
Q ss_pred hhhhcCCCCceeccCCccccccCCccccCCCC
Q 037951 236 SLGLYFPNLKLFQTNENFFSGSIPISLSNASK 267 (627)
Q Consensus 236 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 267 (627)
+++++.|++..|.++|.+|..++.++.
T Consensus 164 -----~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 164 -----CPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -----TTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -----CCCHHHHHHHHHhCCceeeccCccccC
Confidence 556777777777777777766655543
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=7.9e-20 Score=184.00 Aligned_cols=238 Identities=16% Similarity=0.162 Sum_probs=165.0
Q ss_pred cEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccc-hhhcCCCCCcE-eec
Q 037951 323 QVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIP-KEMGKLLNLQG-LDF 400 (627)
Q Consensus 323 ~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~L 400 (627)
++++.++++++ .+|..+ +.++++|++++|+++...+.+|.++++|++|++++|++.+.++ .+|.++++++. +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 56777888777 566544 3478889999888886656678888888888888888765554 45777877765 556
Q ss_pred cCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCC-cCcccCC-ccccccccCccEEEccCCcc
Q 037951 401 GGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFAN-ELSGTIP-GDIFNISSLSVSLDLAENHF 478 (627)
Q Consensus 401 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~-~~~~~~~~ll~~L~l~~n~l 478 (627)
++|++....+..|..+++|++|++++|++....+..+....++..+++.++ .+. .++ ..+..+...++.|++++|++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc-cccccchhhcchhhhhhccccccc
Confidence 678888777778888888888888888888666656666667778887654 444 444 33444444347788888888
Q ss_pred ccCCCccccCCCCCCEEEccC-CcccccCC-ccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccch
Q 037951 479 VGSIPPRIGNLKALRCFDVSN-NDLSGEIP-SELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPI 556 (627)
Q Consensus 479 ~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~ 556 (627)
....+. .....+|++|++++ |.++ .+| ..|+.+++|++|++++|+++...+.. +.+|+.|.+.++.-...+|.
T Consensus 167 ~~i~~~-~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 167 QEIHNS-AFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp CEECTT-SSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC
T ss_pred cCCChh-hccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC
Confidence 744333 33456788888875 4555 554 45788888888888888887554433 45566777766666666774
Q ss_pred hcccCc-CCeeeCcCC
Q 037951 557 FLEALS-LEYLNLSFN 571 (627)
Q Consensus 557 ~~~~~~-L~~L~ls~n 571 (627)
+..+. |+.++++++
T Consensus 242 -l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 242 -LEKLVALMEASLTYP 256 (350)
T ss_dssp -TTTCCSCCEEECSCH
T ss_pred -chhCcChhhCcCCCC
Confidence 44455 888887654
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=3.5e-19 Score=167.50 Aligned_cols=166 Identities=27% Similarity=0.263 Sum_probs=124.8
Q ss_pred CCCCCCCCCCCCCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCc
Q 037951 36 ILNSWNDSRHFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPA 115 (627)
Q Consensus 36 ~~~~w~~~~~~c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~ 115 (627)
....|......|+|.++.| +++.++.+ |..+. ++|++|++++|.+++..|..|..+++|++|+|++|++....+.
T Consensus 8 ~~~~~~~~~~~Cs~~~v~c--~~~~l~~i-p~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~ 82 (229)
T 3e6j_A 8 HHSAACPSQCSCSGTTVDC--RSKRHASV-PAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVG 82 (229)
T ss_dssp ---CCCCTTCEEETTEEEC--TTSCCSSC-CSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred hhhccCCCCCEEeCCEeEc--cCCCcCcc-CCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChh
Confidence 4456666777899999876 55555533 33332 7888888888888877788888888888888888888765556
Q ss_pred cccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCc
Q 037951 116 NLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKEL 195 (627)
Q Consensus 116 ~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 195 (627)
.|.++++|++|++++|+++...+..|..+++|++|++++|.++ .+|..+.++++|++|++++|.+.+..+..+..+++|
T Consensus 83 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 161 (229)
T 3e6j_A 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCC
Confidence 6788888888888888888666666778888888888888887 567777778888888888888876655667777777
Q ss_pred cEEEeeCccccc
Q 037951 196 KTLGIGGNNLSG 207 (627)
Q Consensus 196 ~~L~l~~n~~~~ 207 (627)
+.|++++|.+.+
T Consensus 162 ~~L~l~~N~~~c 173 (229)
T 3e6j_A 162 THAYLFGNPWDC 173 (229)
T ss_dssp CEEECTTSCBCT
T ss_pred CEEEeeCCCccC
Confidence 777777777654
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=4.9e-19 Score=178.19 Aligned_cols=203 Identities=15% Similarity=0.125 Sum_probs=136.0
Q ss_pred CCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCC-ccccCCCCCCE
Q 037951 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP-ANLSYCSRLTV 125 (627)
Q Consensus 47 c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~ 125 (627)
|+|..|.| ++++++. +|..+ .+++++|+|++|+++...+++|.++++|++|+|++|++.+.+| ..|.+++++++
T Consensus 9 C~~~~v~C--~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 9 CSNRVFLC--QESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83 (350)
T ss_dssp EETTEEEE--ESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE
T ss_pred eeCCEEEe--cCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh
Confidence 66666655 4566664 35444 3578999999999986556678999999999999998865444 46788888775
Q ss_pred -EEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCC-CCCCCCCCCccCCCC-CccEEEeeC
Q 037951 126 -LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAG-NPFGGNIPDSLGQLK-ELKTLGIGG 202 (627)
Q Consensus 126 -L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~-n~~~~~~~~~l~~l~-~L~~L~l~~ 202 (627)
+.+++|+++...+..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.|++++
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 55667888877788888888888888888888866666666677777888755 456655455566553 577788888
Q ss_pred ccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCcccc
Q 037951 203 NNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFS 255 (627)
Q Consensus 203 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~ 255 (627)
|.++ .++.......+|+.+++.+++..+.+|...+..+++|++|++++|.++
T Consensus 164 N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 164 NGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp SCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred cccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 8877 344444455567777766543333454443332334444444444333
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=2e-18 Score=182.64 Aligned_cols=187 Identities=24% Similarity=0.282 Sum_probs=120.5
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|+.|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 56666666666654 44433 256667777766666 444 345667777777777664 444 433 67777777
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc
Q 037951 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE 505 (627)
Q Consensus 426 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 505 (627)
+|.+++ +|. .+++|+.|++++|.+.+ +|. .++++ ++|++++|.+.+ +|. +. ++|++|++++|.++ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L-~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSL-EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCc-CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 777764 444 46677777777777763 554 34455 677777777765 454 44 77788888888777 6
Q ss_pred CCccccCCCCC-------CEEECCCCcccccCChhccCCCCCCEEECCCCcCccccchhcccC
Q 037951 506 IPSELGLCSSL-------EEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEAL 561 (627)
Q Consensus 506 ~~~~l~~l~~L-------~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~ 561 (627)
+|. +.. +| +.|++++|.|+. +|..+..+++|+.|++++|++++.+|..+..+
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 665 443 66 888888888874 56666668888888888888877777665543
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=7.4e-18 Score=157.25 Aligned_cols=155 Identities=25% Similarity=0.317 Sum_probs=108.5
Q ss_pred CCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEE
Q 037951 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVL 126 (627)
Q Consensus 47 c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 126 (627)
|.|..+ ++++++++.+ |..+. +++++|++++|.+++..+..|..+++|++|+|++|++++..|..|.++++|++|
T Consensus 11 C~~~~v--~c~~~~l~~i-P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L 85 (220)
T 2v9t_B 11 CSNNIV--DCRGKGLTEI-PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSL 85 (220)
T ss_dssp EETTEE--ECTTSCCSSC-CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEE
T ss_pred ECCCEE--EcCCCCcCcC-CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEE
Confidence 555544 4455665543 33333 577788888887776666677777788888888887777667777777777777
Q ss_pred EccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCcccc
Q 037951 127 VLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLS 206 (627)
Q Consensus 127 ~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 206 (627)
++++|+++...+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 86 ~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 86 VLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 77777777555555677777777777777777666677777777777777777777665566666777777777776654
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=1.9e-18 Score=182.76 Aligned_cols=186 Identities=22% Similarity=0.337 Sum_probs=125.8
Q ss_pred CCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCC
Q 037951 74 FLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALP 153 (627)
Q Consensus 74 ~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~ 153 (627)
++++|++++|.+++ +|..+ +++|++|+|++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 57777777777764 55544 267777777777777 555 446777777777777774 555 444 77777777
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCC
Q 037951 154 MNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSL 233 (627)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 233 (627)
+|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 777775 444 56777777777777774 444 45677777777777774 555 54 77777777777776 55
Q ss_pred ChhhhhcCCCC-------ceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCC
Q 037951 234 PPSLGLYFPNL-------KLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGG 288 (627)
Q Consensus 234 ~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 288 (627)
|. +. .+| +.|++++|.++ .+|..+..+++|+.|++++|.+.+..|..+..
T Consensus 196 p~-~~---~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 196 PA-VP---VRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC-CC-----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred hh-HH---HhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 55 32 255 77788877777 46666667788888888888877766655443
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=6.9e-18 Score=157.45 Aligned_cols=153 Identities=21% Similarity=0.252 Sum_probs=139.4
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCC
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMN 155 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 155 (627)
+.+++++++++ .+|..+. ++|+.|++++|.+++..+..|..+++|++|++++|++++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 57999999997 6676665 79999999999999877788999999999999999999888999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCcc
Q 037951 156 NLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHG 231 (627)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 231 (627)
.++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.+++++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9997666778999999999999999998888999999999999999999997777789999999999999998864
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=7.8e-18 Score=157.08 Aligned_cols=156 Identities=24% Similarity=0.270 Sum_probs=104.5
Q ss_pred CCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCC-cccCCCCCCCEEeCCCCcCcccCCccccCCCCCCE
Q 037951 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIP-LEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTV 125 (627)
Q Consensus 47 c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 125 (627)
|.|..+ +++++.++. +|..+. ..+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|.++++|++
T Consensus 11 C~~~~l--~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 11 CEGTTV--DCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp EETTEE--ECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ECCCEe--EeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence 555533 556666654 344332 345777777777775533 34677777777777777777666666777777777
Q ss_pred EEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccc
Q 037951 126 LVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNL 205 (627)
Q Consensus 126 L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~ 205 (627)
|++++|++++..+..|..+++|++|++++|.+++..|..+.++++|++|++++|.+++..|..|..+++|++|++++|.+
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 77777777766666677777777777777777766666677777777777777777766666666666777776666666
Q ss_pred cc
Q 037951 206 SG 207 (627)
Q Consensus 206 ~~ 207 (627)
.+
T Consensus 166 ~c 167 (220)
T 2v70_A 166 NC 167 (220)
T ss_dssp EC
T ss_pred cC
Confidence 53
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=1e-17 Score=156.35 Aligned_cols=156 Identities=18% Similarity=0.189 Sum_probs=140.7
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCC-ccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCC
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIP-ANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPM 154 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 154 (627)
++++++++.++ .+|..+. ..+++|++++|.+++..+ ..|.++++|++|++++|++++..+..|.++++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 58999999998 5776664 467999999999997655 4589999999999999999988888999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCC
Q 037951 155 NNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLP 234 (627)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 234 (627)
|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99998888889999999999999999998889999999999999999999998889999999999999999999886554
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=3.4e-17 Score=153.90 Aligned_cols=155 Identities=22% Similarity=0.205 Sum_probs=137.7
Q ss_pred CCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCC
Q 037951 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPM 154 (627)
Q Consensus 75 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 154 (627)
-+.++.+++.+. .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|++....+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 356889998887 6776554 8999999999999988899999999999999999999866667789999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCC
Q 037951 155 NNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSL 233 (627)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 233 (627)
|.+++..+..|..+++|++|++++|.+. .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9999777777899999999999999999 67888999999999999999999666677889999999999999887554
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=9.8e-18 Score=163.70 Aligned_cols=167 Identities=21% Similarity=0.344 Sum_probs=79.2
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
+|+.|++++|.+... + .+..+++|+.|++++|++++..+ +..+++|+.|++++|.+.+ ++ .+..+++|++|+++
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECC
Confidence 455555555555422 2 24445555555555555543222 4455555555555555442 11 24445555555555
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc
Q 037951 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE 505 (627)
Q Consensus 426 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 505 (627)
+|.+++. ..+..+++|+.|++++|.+. +. ..+..+++|++|++++|.+++.
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~-------------------------~~--~~l~~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKIT-------------------------DI--TVLSRLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCC-------------------------CC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCC-------------------------cc--hhhccCCCCCEEEccCCccccc
Confidence 5554432 23444444444444444443 22 2344455555555555555422
Q ss_pred CCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCc
Q 037951 506 IPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 506 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~ 551 (627)
.+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred hh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 22 45555555555555555432 2 2455555555555555544
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=2.2e-17 Score=166.82 Aligned_cols=176 Identities=18% Similarity=0.137 Sum_probs=113.6
Q ss_pred CEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhh-CCCCCCEEEccCCccccccChhhcCCCCCCEEECcC
Q 037951 372 YSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLG-NLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFA 450 (627)
Q Consensus 372 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 450 (627)
+.++++++.++ .+|..+. +.++.|+|++|.+++..+..|. .+++|++|++++|.+++..+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46777777777 4555443 3577888888888766666666 777888888888887766666777777777777777
Q ss_pred CcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccc---cCCCCCCEEECCCCccc
Q 037951 451 NELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSEL---GLCSSLEEIYLAENFFN 527 (627)
Q Consensus 451 n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~L~~n~i~ 527 (627)
|.+.+..+..+..+..+ ++|++++|++.+..+..|..+++|++|+|++|++++..+..+ ..+++|+.|+|++|.++
T Consensus 98 N~l~~~~~~~~~~l~~L-~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQAL-EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCCEECTTTTTTCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCCcCCHHHhCCCcCC-CEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 77764444455556666 666666666666556666666666666666666663222223 44666666666666666
Q ss_pred ccCChhccCCCC--CCEEECCCCcCc
Q 037951 528 GFIPSFFRTSRG--IRKVDLSRNNFF 551 (627)
Q Consensus 528 ~~~~~~l~~l~~--L~~L~ls~n~l~ 551 (627)
...+..+..++. ++.|++++|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 555455555554 356666666654
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.2e-17 Score=168.60 Aligned_cols=173 Identities=20% Similarity=0.175 Sum_probs=118.9
Q ss_pred ecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccC-CCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccc
Q 037951 55 DLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFG-RLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKL 133 (627)
Q Consensus 55 ~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l 133 (627)
++++++++.. |..+. +.+++|+|++|.+++..+..|. ++++|++|+|++|++++..+..|.++++|++|++++|++
T Consensus 24 ~c~~~~l~~i-P~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 24 SCSKQQLPNV-PQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp ECCSSCCSSC-CSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeCCCCcCcc-CccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 5566666653 43333 4577888888888766666676 788888888888888766667788888888888888888
Q ss_pred cccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCcc---CCCCCccEEEeeCccccccCC
Q 037951 134 VGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSL---GQLKELKTLGIGGNNLSGSIP 210 (627)
Q Consensus 134 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l---~~l~~L~~L~l~~n~~~~~~~ 210 (627)
+...+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+ ..+++|+.|++++|.++...+
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence 76666677778888888888888776667777777888888888887775433334 456777777777777764333
Q ss_pred ccccCCCC--CcEEEeecccCc
Q 037951 211 PSIYNLSF--LVIFSVSENQMH 230 (627)
Q Consensus 211 ~~l~~l~~--L~~L~l~~n~l~ 230 (627)
..+..++. ++.|++++|.+.
T Consensus 181 ~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 181 TDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHHSCHHHHTTEECCSSCEE
T ss_pred HHhhhccHhhcceEEecCCCcc
Confidence 44555554 355666666554
No 110
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=4.9e-17 Score=158.73 Aligned_cols=173 Identities=23% Similarity=0.384 Sum_probs=130.3
Q ss_pred cCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCC
Q 037951 315 SLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLN 394 (627)
Q Consensus 315 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 394 (627)
.+..+++|+.|++++|.+... + .+..+. +|++|++++|++++..+ +..+++|+.|++++|.+++ ++ .+..+++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~-~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~ 113 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSV-Q-GIQYLP-NVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKK 113 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCC-T-TGGGCT-TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTT
T ss_pred chhhcCcccEEEccCCCcccC-h-hHhcCC-CCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCC
Confidence 345678999999999999844 3 356665 89999999999986554 8899999999999999985 33 4889999
Q ss_pred CcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEcc
Q 037951 395 LQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLA 474 (627)
Q Consensus 395 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~ 474 (627)
|+.|++++|++.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..++.+ ++|+++
T Consensus 114 L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L-~~L~L~ 186 (291)
T 1h6t_A 114 LKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKL-QNLYLS 186 (291)
T ss_dssp CCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTC-CEEECC
T ss_pred CCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCcc-CEEECC
Confidence 99999999999853 4688899999999999999865 578888999999998888874322 4444444 555555
Q ss_pred CCccccCCCccccCCCCCCEEEccCCccc
Q 037951 475 ENHFVGSIPPRIGNLKALRCFDVSNNDLS 503 (627)
Q Consensus 475 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 503 (627)
+|.+.+. + .+..+++|+.|++++|+++
T Consensus 187 ~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 187 KNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp SSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred CCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 5555432 2 2444555555555555544
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.2e-17 Score=178.66 Aligned_cols=169 Identities=22% Similarity=0.391 Sum_probs=73.8
Q ss_pred CCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEE
Q 037951 368 LVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILE 447 (627)
Q Consensus 368 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 447 (627)
+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++|.+.+ ++ .+..+++|+.|+
T Consensus 42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 3444444444444432 11 23444444444444444442222 3444444444444444442 11 344444444444
Q ss_pred CcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCccc
Q 037951 448 MFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFN 527 (627)
Q Consensus 448 l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~ 527 (627)
+++|.+.+ + ..+..++.| +.|++++|.+.+. ..+..+++|++|+|++|.+.+..| +..+++|+.|+|++|.++
T Consensus 116 Ls~N~l~~-l-~~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 116 LEHNGISD-I-NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp CTTSCCCC-C-GGGGGCTTC-SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ecCCCCCC-C-ccccCCCcc-CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 44444432 1 223344444 4444444444432 234445555555555555543322 445555555555555554
Q ss_pred ccCChhccCCCCCCEEECCCCcCc
Q 037951 528 GFIPSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 528 ~~~~~~l~~l~~L~~L~ls~n~l~ 551 (627)
+. ..+..+++|+.|++++|++.
T Consensus 189 ~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 189 DL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp BC--GGGTTCTTCSEEECCSEEEE
T ss_pred CC--hHHccCCCCCEEEccCCcCc
Confidence 32 22444555555555555544
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=1.4e-17 Score=152.70 Aligned_cols=153 Identities=17% Similarity=0.171 Sum_probs=122.6
Q ss_pred CCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCe
Q 037951 70 GNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQ 149 (627)
Q Consensus 70 ~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 149 (627)
..+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45678899999999887 556 6888899999999998665 2347888999999999999988777888888999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeeccc
Q 037951 150 LALPMNNLTGGIPPFLGNLTSLEVVSLAGNP-FGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQ 228 (627)
Q Consensus 150 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 228 (627)
|++++|.+++..+..++++++|++|++++|. +. .++ .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 9999998887677778888999999999987 66 344 67888888888888888874 33 67778888888888887
Q ss_pred Cc
Q 037951 229 MH 230 (627)
Q Consensus 229 l~ 230 (627)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 65
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=5.2e-17 Score=173.82 Aligned_cols=184 Identities=25% Similarity=0.321 Sum_probs=123.7
Q ss_pred cCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccc
Q 037951 56 LRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVG 135 (627)
Q Consensus 56 l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~ 135 (627)
+..+.+.+.. .+..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|++|+|++|.+.+
T Consensus 28 l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 28 LKKKSVTDAV--TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp TTCSCTTSEE--CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred ccCCCccccc--chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC
Confidence 4444444433 24566778888888887763 33 47778888888888888775433 7778888888888887763
Q ss_pred cCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccC
Q 037951 136 SIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYN 215 (627)
Q Consensus 136 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 215 (627)
+ ..+..+++|++|++++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..| +..
T Consensus 102 -l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~ 173 (605)
T 1m9s_A 102 -L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG 173 (605)
T ss_dssp -C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT
T ss_pred -C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc
Confidence 3 3677777888888888877742 3477777788888888777754 567777777777777777775433 677
Q ss_pred CCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccc
Q 037951 216 LSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSG 256 (627)
Q Consensus 216 l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~ 256 (627)
+++|+.|++++|.+.+. + .+. .+++|+.|++++|.+.+
T Consensus 174 l~~L~~L~Ls~N~i~~l-~-~l~-~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 174 LTKLQNLYLSKNHISDL-R-ALA-GLKNLDVLELFSQECLN 211 (605)
T ss_dssp CTTCCEEECCSSCCCBC-G-GGT-TCTTCSEEECCSEEEEC
T ss_pred CCCCCEEECcCCCCCCC-h-HHc-cCCCCCEEEccCCcCcC
Confidence 77777777777777642 2 222 25556666666555543
No 114
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=3.3e-18 Score=187.83 Aligned_cols=235 Identities=18% Similarity=0.170 Sum_probs=123.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCCCCCCCC-CCCCCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcc
Q 037951 14 FEEGDLAALQAFKSMISHDPQGILNSWNDS-RHFCEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLE 92 (627)
Q Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~w~~~-~~~c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~ 92 (627)
..+.+++++..+..+.....+..-..|... ...+.|.++.+ .-++++.|+|.++.+.. .+..
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------s~~~~~~l~L~~n~~~~-~~~~ 191 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAV----------------STPLTPKIELFANGKDE-ANQA 191 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCcee----------------cCCccceEEeeCCCCCc-chhh
Confidence 455677888888887765544444556432 23455655433 11346677777777663 3333
Q ss_pred cCCCCCCCEEe-----CCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCC
Q 037951 93 FGRLRRLETLL-----LSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGN 167 (627)
Q Consensus 93 ~~~l~~L~~L~-----L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~ 167 (627)
+.....|+.+. +..|.+. ..+..+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+++
T Consensus 192 ~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 268 (727)
T 4b8c_D 192 LLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKN 268 (727)
T ss_dssp -------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGG
T ss_pred HhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhC
Confidence 32222233222 2233333 45667788888888888888887 66767778888888888888888 67777888
Q ss_pred CCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCcee
Q 037951 168 LTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLF 247 (627)
Q Consensus 168 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 247 (627)
+++|++|+|++|.++ .+|..+..+++|++|+|++|.+. .+|..++.+++|+.|++++|.+.+.+|..+.........+
T Consensus 269 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l 346 (727)
T 4b8c_D 269 LSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIF 346 (727)
T ss_dssp GTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHH
Confidence 888888888888888 66888888888888888888887 6787788888888888888888877777665432333346
Q ss_pred ccCCccccccCCccccCCCCCcEeecccc
Q 037951 248 QTNENFFSGSIPISLSNASKLEYVEIASN 276 (627)
Q Consensus 248 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 276 (627)
++++|.+++.+|.. |+.++++.|
T Consensus 347 ~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 347 YLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp HHHHCCCCCCCCCC---------------
T ss_pred hhccCcccCcCccc------cceeEeecc
Confidence 77888887766653 455556555
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=5.4e-17 Score=148.78 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=47.0
Q ss_pred hcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCc-ccccCCccccCCCC
Q 037951 437 LGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNND-LSGEIPSELGLCSS 515 (627)
Q Consensus 437 l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~ 515 (627)
+..+++|++|++++|.+.+..+..+..++.+ ++|++++|.+.+..+..+..+++|++|++++|. ++ .+| .+..+++
T Consensus 84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~ 160 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSL-TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPE 160 (197)
T ss_dssp GTTCTTCCEEEEECTTCBGGGSCCCTTCTTC-CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSS
T ss_pred hhcCCCCCEEEeECCccCcccChhhcCCCCC-CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCC
Confidence 3333444444444433333233333333333 333333333333333344445555555555554 33 333 3455555
Q ss_pred CCEEECCCCcccccCChhccCCCCCCEEECCCCcCc
Q 037951 516 LEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 516 L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~ 551 (627)
|+.|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 161 L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 161 LKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred CCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 55555555555432 2 3445555555555555543
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=5.4e-17 Score=155.82 Aligned_cols=167 Identities=22% Similarity=0.288 Sum_probs=86.6
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEcc
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLG 425 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 425 (627)
++..++++++.+++.. .+..+++|+.|++++|.++. ++ .+..+++|+.|++++|.+.+..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3555555555554322 34455556666666655552 23 34555555555555555553222 4555555555555
Q ss_pred CCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc
Q 037951 426 DNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE 505 (627)
Q Consensus 426 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 505 (627)
+|++++. +. +.. ++|+ +|++++|++.+. ..+..+++|++|++++|++++
T Consensus 94 ~N~l~~l-~~-~~~-~~L~-------------------------~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~- 142 (263)
T 1xeu_A 94 RNRLKNL-NG-IPS-ACLS-------------------------RLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS- 142 (263)
T ss_dssp SSCCSCC-TT-CCC-SSCC-------------------------EEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB-
T ss_pred CCccCCc-Cc-ccc-Cccc-------------------------EEEccCCccCCC--hhhcCcccccEEECCCCcCCC-
Confidence 5555432 21 111 4444 444444444432 235555666666666666652
Q ss_pred CCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCcc
Q 037951 506 IPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFG 552 (627)
Q Consensus 506 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~ 552 (627)
++ .+..+++|+.|++++|.+++. ..+..+++|+.|++++|++..
T Consensus 143 ~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 143 IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 22 455566666666666666554 445556666666666666553
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=7e-17 Score=147.17 Aligned_cols=132 Identities=17% Similarity=0.203 Sum_probs=91.7
Q ss_pred CEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCc-cccccccCccEEEccCCccccCCCccccCCCCCCEEEcc
Q 037951 420 YEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPG-DIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVS 498 (627)
Q Consensus 420 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 498 (627)
+.+++++|.++ .+|..+. .++++|++++|.+.+..+. .+..++.+ ++|++++|++.+..|..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHL-VKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTC-CEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCC-CEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 67788888776 4555443 3677777777777644443 25666666 777777777776667777777777777777
Q ss_pred CCcccccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCccccc
Q 037951 499 NNDLSGEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIP 555 (627)
Q Consensus 499 ~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p 555 (627)
+|++++..+..|..+++|++|++++|.+++..|..+..+++|+.|++++|++.+..+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 777776666667777777777777777777777777777777777777777765444
No 118
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=1.9e-16 Score=152.07 Aligned_cols=162 Identities=23% Similarity=0.289 Sum_probs=123.9
Q ss_pred cCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccc
Q 037951 56 LRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVG 135 (627)
Q Consensus 56 l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~ 135 (627)
+..+.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|++++. +. +.++++|++|++++|++++
T Consensus 26 l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 26 LGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp HTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC
T ss_pred hcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC
Confidence 4444555433 4667788899999998887 445 688888999999999988854 43 8888899999999998874
Q ss_pred cCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccC
Q 037951 136 SIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYN 215 (627)
Q Consensus 136 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~ 215 (627)
++. +.. ++|++|++++|.+++. ..+.++++|++|++++|++++. + .+..+++|++|++++|.+++. ..+..
T Consensus 100 -l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~ 170 (263)
T 1xeu_A 100 -LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTR 170 (263)
T ss_dssp -CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTT
T ss_pred -cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhcc
Confidence 333 223 8888999998888853 3588888889999988888854 3 678888888888888888855 66788
Q ss_pred CCCCcEEEeecccCccC
Q 037951 216 LSFLVIFSVSENQMHGS 232 (627)
Q Consensus 216 l~~L~~L~l~~n~l~~~ 232 (627)
+++|+.|++++|.+.+.
T Consensus 171 l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 171 LKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp CCCCCEEEEEEEEEECC
T ss_pred CCCCCEEeCCCCcccCC
Confidence 88888888888887643
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=1.4e-18 Score=184.93 Aligned_cols=202 Identities=16% Similarity=0.182 Sum_probs=100.3
Q ss_pred CCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCC
Q 037951 316 LANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNL 395 (627)
Q Consensus 316 l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 395 (627)
+..++.|+.|++++|+++ .+|..+..+. +|+.|++++|......+..+ ..+...+..|..++.+++|
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L 411 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCK-ELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTL 411 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHH-HHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHH-HHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhc
Confidence 345667777777777776 6677777766 67777775553111111100 1112233455556666666
Q ss_pred cEee-ccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEcc
Q 037951 396 QGLD-FGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLA 474 (627)
Q Consensus 396 ~~L~-L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~ 474 (627)
+.|+ ++.|.+. .|+.+.+++|.++...+ ..|+.|++++|.+.+ +|. +..+..+ +.|+++
T Consensus 412 ~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L-~~L~Ls 471 (567)
T 1dce_A 412 KAVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV-THLDLS 471 (567)
T ss_dssp HHHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC-CEEECC
T ss_pred ccCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccC-cEeecC
Confidence 6666 4444332 12222233333332111 124444444444442 333 4444444 455555
Q ss_pred CCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEECCCCcccccC-ChhccCCCCCCEEECCCCcCccc
Q 037951 475 ENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLAENFFNGFI-PSFFRTSRGIRKVDLSRNNFFGQ 553 (627)
Q Consensus 475 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~-~~~l~~l~~L~~L~ls~n~l~~~ 553 (627)
+|.+. .+|..+.++++|++|+|++|.+++ +| .++.+++|+.|+|++|.+++.. |..+..+++|+.|++++|++.+.
T Consensus 472 ~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 472 HNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred ccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 55544 444455555555555555555552 44 4555555555555555555544 55555555555555555555543
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=4.7e-17 Score=162.23 Aligned_cols=284 Identities=11% Similarity=0.069 Sum_probs=143.3
Q ss_pred CCCCCEEECCCCCCcccCCcccCC-CCCCCEEeCCCCcCc--ccCCccccCCCCCCEEEccCccccccCCccccC-----
Q 037951 72 LSFLREINLMNNTIQGEIPLEFGR-LRRLETLLLSDNSLV--GKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVS----- 143 (627)
Q Consensus 72 l~~L~~L~Ls~~~~~~~~~~~~~~-l~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~----- 143 (627)
+.+++.|+++++- .......+.. +++|++|||++|++. ...+. .++.++.+.+..+.+ ...+|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhccccccc
Confidence 4567777777541 1111112223 677788888877776 22211 222244455555432 3445566
Q ss_pred ---CCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccc----cccCCccccCC
Q 037951 144 ---LYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNL----SGSIPPSIYNL 216 (627)
Q Consensus 144 ---l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~----~~~~~~~l~~l 216 (627)
+++|+.|++.+ .++...+..|.+|++|+.+++.+|.+....+..|..+.++..+....+.. .......+.++
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 78888888877 66655566677888888888888877766666777766666665544221 11122334444
Q ss_pred CCCc-EEEeecccCccCCChhhhhc---CCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCc
Q 037951 217 SFLV-IFSVSENQMHGSLPPSLGLY---FPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNL 292 (627)
Q Consensus 217 ~~L~-~L~l~~n~l~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L 292 (627)
..|+ .+.+... +.++..+... ..++..+.+.+.-...........+++|+.+++++|.+.......
T Consensus 176 ~~L~~~i~~~~~---~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~a------- 245 (329)
T 3sb4_A 176 EPLETTIQVGAM---GKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFT------- 245 (329)
T ss_dssp CCCEEEEEECTT---CCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTT-------
T ss_pred cccceeEEecCC---CcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhh-------
Confidence 5554 3333221 1222222111 122222222221111000000012344444444444444444444
Q ss_pred CEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhcccccc-EEEeecccccccCcccccCCCCC
Q 037951 293 SYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQ-ILVLGTNQLYGSIPSGIGNLVNL 371 (627)
Q Consensus 293 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L 371 (627)
|.++++|+.+++.+| +....+.+|.++. +|+ .+++.+ .++...+.+|.++++|
T Consensus 246 -----------------------F~~~~~L~~l~l~~n-i~~I~~~aF~~~~-~L~~~l~l~~-~l~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 246 -----------------------FAQKKYLLKIKLPHN-LKTIGQRVFSNCG-RLAGTLELPA-SVTAIEFGAFMGCDNL 299 (329)
T ss_dssp -----------------------TTTCTTCCEEECCTT-CCEECTTTTTTCT-TCCEEEEECT-TCCEECTTTTTTCTTE
T ss_pred -----------------------hhCCCCCCEEECCcc-cceehHHHhhCCh-hccEEEEEcc-cceEEchhhhhCCccC
Confidence 444555555555544 4333334444443 455 555555 4444445666677777
Q ss_pred CEEeCCCCccccccchhhcCCCCCcEee
Q 037951 372 YSLQTEENQFTGSIPKEMGKLLNLQGLD 399 (627)
Q Consensus 372 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 399 (627)
+.+++.+|.++...+.+|.++++|+.++
T Consensus 300 ~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 300 RYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CEEEeCCCccCccchhhhcCCcchhhhc
Confidence 7777777776655566677777777665
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=1.3e-15 Score=138.74 Aligned_cols=155 Identities=23% Similarity=0.267 Sum_probs=93.3
Q ss_pred CEEECcCCcCcccCCccccccccCccEEEccCCccccCCCc-cccCCCCCCEEEccCCcccccCCccccCCCCCCEEECC
Q 037951 444 AILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPP-RIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIYLA 522 (627)
Q Consensus 444 ~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L~ 522 (627)
+.++++++.+. .+|..+.. .+ ++|++++|.+.+..+. .+..+++|++|++++|++++..|..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l-~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HT-TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TC-SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CC-CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 56666666664 56654433 44 6677777766654443 36666777777777777765556666667777777777
Q ss_pred CCcccccCChhccCCCCCCEEECCCCcCccccchhcccCc-CCeeeCcCCcccccCCCCCccCCCCccccccCCCCcccC
Q 037951 523 ENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQIPIFLEALS-LEYLNLSFNDFEGRLPTRGIFANASAISVGGCNRLCGGI 601 (627)
Q Consensus 523 ~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~-L~~L~ls~n~l~~~~p~~~~~~~l~~l~~~~n~~l~~~~ 601 (627)
+|.+++..+..|..+++|+.|++++|.+.+..|..+..++ |++|++++|++.+..+.......++...+.++...|+.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 7777666666666667777777777777666666666665 777777777666554422111122223334444455544
Q ss_pred C
Q 037951 602 H 602 (627)
Q Consensus 602 ~ 602 (627)
+
T Consensus 167 ~ 167 (192)
T 1w8a_A 167 S 167 (192)
T ss_dssp T
T ss_pred h
Confidence 3
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=5.5e-18 Score=180.32 Aligned_cols=201 Identities=18% Similarity=0.153 Sum_probs=145.0
Q ss_pred cCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCc-------------ccccCChhhhCCCCCCEEE-ccCCcccc
Q 037951 366 GNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNH-------------FSGEIPSTLGNLSSLYEIF-LGDNNLSG 431 (627)
Q Consensus 366 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-------------~~~~~~~~~~~~~~L~~L~-l~~n~~~~ 431 (627)
..++.|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 34567777777777776 567777777777777775554 2223333344444444444 3332221
Q ss_pred ccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCcccc
Q 037951 432 VIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELG 511 (627)
Q Consensus 432 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~ 511 (627)
.|+.+.+.+|.+.. ++. ..+ +.|++++|.+.+ +|. +..+++|+.|++++|.++ .+|..++
T Consensus 424 ----------~L~~l~l~~n~i~~-l~~-----~~L-~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLK-MEY-----ADV-RVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp ----------HHHHHHHHHHHHHH-HHH-----TTC-SEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred ----------hhhhhhhhcccccc-cCc-----cCc-eEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 12222233333331 111 134 899999999986 565 999999999999999999 8899999
Q ss_pred CCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCcccc-chhcccCc-CCeeeCcCCcccccCCCCC----ccCC
Q 037951 512 LCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFFGQI-PIFLEALS-LEYLNLSFNDFEGRLPTRG----IFAN 585 (627)
Q Consensus 512 ~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~~~~-p~~~~~~~-L~~L~ls~n~l~~~~p~~~----~~~~ 585 (627)
.+++|+.|+|++|.+++ +| .+..+++|+.|++++|.+.+.. |..+..++ |+.|++++|++.+..|... .+++
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~ 561 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPS 561 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTT
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcc
Confidence 99999999999999997 56 7999999999999999999876 88898888 9999999999998877542 2566
Q ss_pred CCccc
Q 037951 586 ASAIS 590 (627)
Q Consensus 586 l~~l~ 590 (627)
|+.++
T Consensus 562 L~~L~ 566 (567)
T 1dce_A 562 VSSIL 566 (567)
T ss_dssp CSEEE
T ss_pred cCccC
Confidence 66653
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=4.8e-16 Score=138.55 Aligned_cols=133 Identities=23% Similarity=0.186 Sum_probs=106.5
Q ss_pred CCCCCEEECCCCCCc-ccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCee
Q 037951 72 LSFLREINLMNNTIQ-GEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQL 150 (627)
Q Consensus 72 l~~L~~L~Ls~~~~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 150 (627)
.++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++.+..|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467889999999887 67787788888999999999888854 678888889999999998886677777778888888
Q ss_pred eCCCCCCCCCC-CCCCCCCCCCCEEECCCCCCCCCCC---CccCCCCCccEEEeeCcccc
Q 037951 151 ALPMNNLTGGI-PPFLGNLTSLEVVSLAGNPFGGNIP---DSLGQLKELKTLGIGGNNLS 206 (627)
Q Consensus 151 ~l~~n~l~~~~-~~~l~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~l~~n~~~ 206 (627)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 88888887532 2677888888888888888875444 36777888888888887766
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=6.6e-17 Score=177.57 Aligned_cols=142 Identities=22% Similarity=0.277 Sum_probs=64.4
Q ss_pred chhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccc
Q 037951 386 PKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNIS 465 (627)
Q Consensus 386 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 465 (627)
++.+..++.|+.|+|++|.+. .++..+..+++|++|+|++|.++ .+|..+..+++|+.|++++|.+. .+|..+..+.
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 293 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCF 293 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGT
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCC
Confidence 333444444444444444444 33333334444444444444444 34444444444555555555444 4444444444
Q ss_pred cCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCC-CCEEECCCCcccccCCh
Q 037951 466 SLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSS-LEEIYLAENFFNGFIPS 532 (627)
Q Consensus 466 ~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~-L~~L~L~~n~i~~~~~~ 532 (627)
.| ++|++++|.+. .+|..|..+++|++|+|++|.+++.+|..+..+.. +..+++++|.+++.+|.
T Consensus 294 ~L-~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 294 QL-KYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp TC-SEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CC-CEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 44 45555555443 34444555555555555555555444444433211 11244555555544443
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=5.8e-15 Score=134.31 Aligned_cols=127 Identities=28% Similarity=0.374 Sum_probs=83.2
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCC
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMN 155 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 155 (627)
+++++++++++ .+|..+. ++|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 35666666665 4454443 46777777777766 55666677777777777777776655566666777777777777
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCcccc
Q 037951 156 NLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLS 206 (627)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 206 (627)
.+++..+..|.++++|++|++++|.++...+..|..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 766665666667777777777777776554555666666666666666654
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=5.7e-16 Score=134.97 Aligned_cols=128 Identities=22% Similarity=0.168 Sum_probs=102.4
Q ss_pred CCCCCEEECCCCCCc-ccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCee
Q 037951 72 LSFLREINLMNNTIQ-GEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQL 150 (627)
Q Consensus 72 l~~L~~L~Ls~~~~~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L 150 (627)
.+++++|++++|.++ +.+|..+..+++|++|++++|.+++. ..++++++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 367889999999887 67788888899999999999988855 678888899999999998886677777788888888
Q ss_pred eCCCCCCCCC-CCCCCCCCCCCCEEECCCCCCCCCCC---CccCCCCCccEEEee
Q 037951 151 ALPMNNLTGG-IPPFLGNLTSLEVVSLAGNPFGGNIP---DSLGQLKELKTLGIG 201 (627)
Q Consensus 151 ~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~l~ 201 (627)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888752 33677888888888888888875544 367777788877765
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=8.5e-15 Score=131.58 Aligned_cols=131 Identities=31% Similarity=0.362 Sum_probs=68.4
Q ss_pred CCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEE
Q 037951 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVL 126 (627)
Q Consensus 47 c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 126 (627)
|+|.++.| ++++++.. |..+ .++|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|
T Consensus 7 C~~~~l~~--~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 7 CSGTEIRC--NSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp EETTEEEC--CSSCCSSC-CTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred eCCCEEEe--cCCCCccC-CCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 56666644 34444432 2211 2456666666666654444445556666666666666654444445555556666
Q ss_pred EccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q 037951 127 VLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFG 182 (627)
Q Consensus 127 ~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~ 182 (627)
++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 82 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 66555555444444455555555555555555433333444555555555555444
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=1.5e-14 Score=144.14 Aligned_cols=219 Identities=11% Similarity=0.039 Sum_probs=110.5
Q ss_pred CCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccC----CCCCCCCccccccC
Q 037951 241 FPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNL----GSGESDEMGFMNSL 316 (627)
Q Consensus 241 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l----~~~~~~~~~~~~~l 316 (627)
+++|+.+++.. .++...+.+|.+|++|+.+++.+|.+....+..|.++.++..+....... ..+. ..++
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~------~~~f 172 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWE------HFAF 172 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTT------TSCE
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccc------cccc
Confidence 55566666655 55544455666677777777777766666666666666666555544211 1111 1133
Q ss_pred CCCCccc-EEEccCcccccccchhHHhc---cccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCC
Q 037951 317 ANCSKLQ-VLSLGGNQFRGALPHSIANL---SSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKL 392 (627)
Q Consensus 317 ~~~~~L~-~L~l~~n~~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 392 (627)
.++..|+ .+.+.... .++..+... ..++..+.+.++-...........+++|+.+++.+|+++.....+|.+|
T Consensus 173 ~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~ 249 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK 249 (329)
T ss_dssp EESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC
T ss_pred ccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC
Confidence 3444555 34333221 112221111 1244555554432111111111125566666666666654445556666
Q ss_pred CCCcEeeccCCcccccCChhhhCCCCCC-EEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEE
Q 037951 393 LNLQGLDFGGNHFSGEIPSTLGNLSSLY-EIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSL 471 (627)
Q Consensus 393 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~-~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L 471 (627)
++|+.+++.+| +...-..+|.+|++|+ .+++.+ .++...+.+|.+|++|+.+++..|.+...-+..|.++.++ +.+
T Consensus 250 ~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L-~~l 326 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS-KLI 326 (329)
T ss_dssp TTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC-CEE
T ss_pred CCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcch-hhh
Confidence 66666666665 4444445566666666 666655 5554555566666666666666666653333445555555 444
Q ss_pred E
Q 037951 472 D 472 (627)
Q Consensus 472 ~ 472 (627)
+
T Consensus 327 y 327 (329)
T 3sb4_A 327 Y 327 (329)
T ss_dssp E
T ss_pred c
Confidence 3
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=8.8e-15 Score=130.27 Aligned_cols=130 Identities=16% Similarity=0.167 Sum_probs=68.2
Q ss_pred CCCEEECcCCcCc-ccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCCccccCCCCCCEEE
Q 037951 442 RLAILEMFANELS-GTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIPSELGLCSSLEEIY 520 (627)
Q Consensus 442 ~L~~L~l~~n~l~-~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 520 (627)
+|+.|++++|.+. +.+|..+..++.+ ++|++++|.+.+. ..+..+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNL-EFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGC-CEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCC-CEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3444444444443 3344434444444 4444444444433 3455556666666666666544555555566666666
Q ss_pred CCCCcccccC-ChhccCCCCCCEEECCCCcCccccc---hhcccCc-CCeeeCcCCccc
Q 037951 521 LAENFFNGFI-PSFFRTSRGIRKVDLSRNNFFGQIP---IFLEALS-LEYLNLSFNDFE 574 (627)
Q Consensus 521 L~~n~i~~~~-~~~l~~l~~L~~L~ls~n~l~~~~p---~~~~~~~-L~~L~ls~n~l~ 574 (627)
+++|.+++.. +..+..+++|+.|++++|.+.+..+ ..+..++ |++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 6666665432 1455566666666666666654333 2444444 666666666554
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=1.9e-14 Score=129.35 Aligned_cols=130 Identities=22% Similarity=0.172 Sum_probs=95.3
Q ss_pred CCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCC
Q 037951 75 LREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPM 154 (627)
Q Consensus 75 L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~ 154 (627)
.+.+++++++++ .+|..+ .++|++|++++|++++..+..|.++++|++|++++|++++..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467888888887 455444 36888888888888866666678888888888888888766666677788888888888
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccc
Q 037951 155 NNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSG 207 (627)
Q Consensus 155 n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~ 207 (627)
|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 88776666667777777777777777775555555667777777777776654
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=2.3e-14 Score=130.33 Aligned_cols=131 Identities=24% Similarity=0.273 Sum_probs=114.8
Q ss_pred CCcccceeecCCCCcceecccccCCCCCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEE
Q 037951 47 CEWEGITCDLRSKALSGLLSPQIGNLSFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVL 126 (627)
Q Consensus 47 c~~~~~~c~l~~~~l~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 126 (627)
|.|.. .++++++++.. |..+. +++++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|
T Consensus 10 C~~~~--l~~~~~~l~~i-p~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 10 CLDTV--VRCSNKGLKVL-PKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83 (193)
T ss_dssp EETTE--EECTTSCCSSC-CSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred eCCCE--EEcCCCCCCcC-CCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence 44543 46677777754 44443 68999999999998 778899999999999999999998888889999999999
Q ss_pred EccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q 037951 127 VLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGNPFGG 183 (627)
Q Consensus 127 ~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 183 (627)
++++|+++...+..|..+++|++|++++|.++...+..|..+++|++|++++|.+..
T Consensus 84 ~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 999999998888899999999999999999997767779999999999999999874
No 132
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.57 E-value=1.5e-13 Score=140.47 Aligned_cols=237 Identities=11% Similarity=0.037 Sum_probs=139.4
Q ss_pred ccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCC
Q 037951 188 SLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASK 267 (627)
Q Consensus 188 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 267 (627)
.|.++++|+.+.+..+.. ..-...|..+.+|+.+++..+ +. .++...+..+..|+.+.+..+... +.........
T Consensus 157 aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~ 231 (394)
T 4fs7_A 157 AFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYY--LGDFALSKTG 231 (394)
T ss_dssp TTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCC
T ss_pred hhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceE--eehhhcccCC
Confidence 344444455444443321 122333444444554444333 11 222233333455555554443221 1222334556
Q ss_pred CcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccc
Q 037951 268 LEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQL 347 (627)
Q Consensus 268 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L 347 (627)
|+.+.+... ........+..+..++.+.+..+...- . ...+..+..++.+......+. ...+.... +|
T Consensus 232 l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i-~------~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~-~L 299 (394)
T 4fs7_A 232 VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRI-G------GSLFYNCSGLKKVIYGSVIVP---EKTFYGCS-SL 299 (394)
T ss_dssp CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEE-C------SCTTTTCTTCCEEEECSSEEC---TTTTTTCT-TC
T ss_pred CceEEECCC-ceecccccccccccceeEEcCCCccee-e------ccccccccccceeccCceeec---cccccccc-cc
Confidence 777766533 233344556777778877776553221 1 235667777777777665432 22344444 78
Q ss_pred cEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCC
Q 037951 348 QILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDN 427 (627)
Q Consensus 348 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n 427 (627)
+.+.+..+ +......+|.++++|+.+++.++ ++.....+|.+|++|+.+++..+ ++..-..+|.+|++|+.+++..+
T Consensus 300 ~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 300 TEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred cccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 88888765 44455677889999999999754 55556678999999999999876 66566678999999999999765
Q ss_pred ccccccChhhcCCCCCCEE
Q 037951 428 NLSGVIPSSLGNLERLAIL 446 (627)
Q Consensus 428 ~~~~~~~~~l~~l~~L~~L 446 (627)
- . ....+|.++++|+.+
T Consensus 377 ~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 377 L-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp G-G-GGGGGBCTTCEEEEE
T ss_pred C-E-EhhheecCCCCCcEE
Confidence 3 2 234568888888764
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=5.3e-15 Score=128.79 Aligned_cols=64 Identities=13% Similarity=0.068 Sum_probs=31.2
Q ss_pred CccccCCCCCCEEEccCCccccc-CCccccCCCCCCEEECCCCcccccCC---hhccCCCCCCEEECC
Q 037951 483 PPRIGNLKALRCFDVSNNDLSGE-IPSELGLCSSLEEIYLAENFFNGFIP---SFFRTSRGIRKVDLS 546 (627)
Q Consensus 483 ~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~L~~n~i~~~~~---~~l~~l~~L~~L~ls 546 (627)
|..+..+++|++|++++|.+++. .+..++.+++|++|++++|.+++..+ ..+..+++|+.||++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 33334445555555555555421 12445555555555555555554433 344555555555544
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=4.8e-13 Score=135.97 Aligned_cols=266 Identities=16% Similarity=0.142 Sum_probs=162.0
Q ss_pred CCCCEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeC
Q 037951 73 SFLREINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLAL 152 (627)
Q Consensus 73 ~~L~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l 152 (627)
+.++.+.+... ++.....+|.++ +|+.+.+..+ ++.+-..+|.++ +|+.+.+.. .+......+|.++.+|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 55666666543 333445556654 5777776654 554555556663 577777664 455455566667777777777
Q ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccC
Q 037951 153 PMNNLTGGIPPFLGNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGS 232 (627)
Q Consensus 153 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 232 (627)
++|.++......|. +.+|+.+.+..+ +..+...+|.++++|+.+++..+ ++..-..+|.. .+|+.+.+.. .+. .
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~-~ 261 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT-N 261 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC-E
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc-E
Confidence 76666643333444 466777776643 44455556666677777776653 33333444444 5666666633 333 3
Q ss_pred CChhhhhcCCCCceeccCCcccc-----ccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCC
Q 037951 233 LPPSLGLYFPNLKLFQTNENFFS-----GSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGES 307 (627)
Q Consensus 233 ~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 307 (627)
++...+..+++|+.+.+.++... ...+..|.+|++|+.+++.+ .+.......|.++.+|+.+.+..+ ++.+..
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 44444444667777776665543 34455677788888888874 466666677888888888888554 444332
Q ss_pred CCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeeccccc
Q 037951 308 DEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLY 358 (627)
Q Consensus 308 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 358 (627)
.+|.++ +|+.+++.+|.........|..++..++.|++..+.+.
T Consensus 340 ------~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 340 ------SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ------TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ------HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 367777 88888888887765555666666557778887776543
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=3.8e-13 Score=136.68 Aligned_cols=268 Identities=10% Similarity=0.065 Sum_probs=200.0
Q ss_pred CCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCE
Q 037951 94 GRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEV 173 (627)
Q Consensus 94 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 173 (627)
..+..++.+.+.. .++.+-..+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+.......|.+|++|+.
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 3457888888866 4665667778875 7999999876 665667778774 799999986 566566678899999999
Q ss_pred EECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCcc
Q 037951 174 VSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENF 253 (627)
Q Consensus 174 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~ 253 (627)
+++.+|.+.......|. ..+|+.+.+..+ +...-..+|.++++|+.+++..+ +. .++...+.. .+|+.+.+. +.
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~ 258 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NG 258 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TT
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CC
Confidence 99999888865556666 588999999854 66566778889999999998864 33 344444443 688888884 44
Q ss_pred ccccCCccccCCCCCcEeeccccccc-----ccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEcc
Q 037951 254 FSGSIPISLSNASKLEYVEIASNSFF-----GKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLG 328 (627)
Q Consensus 254 ~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 328 (627)
++.....+|.+|++|+.+++.++... ......|.++++|+.+.+.. .++.+.. .+|.+|++|+.+.+.
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~------~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQ------GLLGGNRKVTQLTIP 331 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECT------TTTTTCCSCCEEEEC
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhh------hhhcCCCCccEEEEC
Confidence 55555677888999999999887654 45566788999999999984 4665443 368888999999996
Q ss_pred CcccccccchhHHhccccccEEEeecccccccCcccccCCC-CCCEEeCCCCccc
Q 037951 329 GNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLV-NLYSLQTEENQFT 382 (627)
Q Consensus 329 ~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~ 382 (627)
.+ ++.....+|.++ +|+.+++.+|.........|.+++ .++.+++..+.+.
T Consensus 332 ~~-l~~I~~~aF~~~--~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 332 AN-VTQINFSAFNNT--GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TT-CCEECTTSSSSS--CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cc-ccEEcHHhCCCC--CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 65 665556667666 799999999888766667777774 7888888876644
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.55 E-value=3.1e-13 Score=138.14 Aligned_cols=236 Identities=14% Similarity=0.086 Sum_probs=158.9
Q ss_pred CccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCC
Q 037951 210 PPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGM 289 (627)
Q Consensus 210 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l 289 (627)
..+|.++++|+.+.+..+.. .++...+..+.+|+.+.+..+ ++......+.++..|+.+.+..+... ........
T Consensus 155 ~~aF~~c~~L~~i~l~~~~~--~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~ 229 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSME--TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSK 229 (394)
T ss_dssp TTTTTTCTTCCEEECCTTCC--EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTT
T ss_pred hhhhcccCCCcEEecCCccc--eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhccc
Confidence 45688888999988875532 355555566888888888765 44444566778888888887665432 22223345
Q ss_pred CCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCcccccCCC
Q 037951 290 KNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLV 369 (627)
Q Consensus 290 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 369 (627)
..|+.+.+... ++.+. ...+.++..++.+.+..+... .....+.... .++.+......+ ....+..+.
T Consensus 230 ~~l~~i~ip~~-~~~i~------~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~-~l~~~~~~~~~i---~~~~F~~~~ 297 (394)
T 4fs7_A 230 TGVKNIIIPDS-FTELG------KSVFYGCTDLESISIQNNKLR-IGGSLFYNCS-GLKKVIYGSVIV---PEKTFYGCS 297 (394)
T ss_dssp CCCCEEEECTT-CCEEC------SSTTTTCSSCCEEEECCTTCE-ECSCTTTTCT-TCCEEEECSSEE---CTTTTTTCT
T ss_pred CCCceEEECCC-ceecc------cccccccccceeEEcCCCcce-eecccccccc-ccceeccCceee---ccccccccc
Confidence 67888877543 22211 235677888888888776443 4444555554 677777765543 234677888
Q ss_pred CCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECc
Q 037951 370 NLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMF 449 (627)
Q Consensus 370 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 449 (627)
+|+.+.+.++ ++.....+|.+|++|+.+++..+ ++..-..+|.+|.+|+.+++..+ ++.....+|.+|++|+.+++.
T Consensus 298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 9999988765 55455677888999999998754 55455678888999999999776 665667788899999999887
Q ss_pred CCcCcccCCccccccccC
Q 037951 450 ANELSGTIPGDIFNISSL 467 (627)
Q Consensus 450 ~n~l~~~~~~~~~~~~~l 467 (627)
.+ +. .+...+..+.++
T Consensus 375 ~~-~~-~~~~~F~~c~~L 390 (394)
T 4fs7_A 375 KR-LE-QYRYDFEDTTKF 390 (394)
T ss_dssp GG-GG-GGGGGBCTTCEE
T ss_pred CC-CE-EhhheecCCCCC
Confidence 54 22 233455555555
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=2e-14 Score=128.91 Aligned_cols=132 Identities=23% Similarity=0.255 Sum_probs=85.2
Q ss_pred ccCCCCCCCEEECCCCCCcccCCcccCCCC-CCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCC
Q 037951 68 QIGNLSFLREINLMNNTIQGEIPLEFGRLR-RLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYK 146 (627)
Q Consensus 68 ~l~~l~~L~~L~Ls~~~~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~ 146 (627)
.+.+..+|++|++++|.++ .++. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 3455677778888888776 3443 44443 778888887777754 46777777777777777777544444567777
Q ss_pred CCeeeCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCc----cCCCCCccEEEeeCccc
Q 037951 147 LKQLALPMNNLTGGIPP--FLGNLTSLEVVSLAGNPFGGNIPDS----LGQLKELKTLGIGGNNL 205 (627)
Q Consensus 147 L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~L~~n~~~~~~~~~----l~~l~~L~~L~l~~n~~ 205 (627)
|++|++++|.++ .+|. .+..+++|++|++++|.+. ..|.. +..+++|+.|+++.|..
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 777777777775 3443 5666666777777776665 23332 55566666666665544
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.47 E-value=1.1e-13 Score=124.13 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=25.4
Q ss_pred cCCCCCCEEEccCCcccccCCc--cccCCCCCCEEECCCCcccccCCh----hccCCCCCCEEECCCCcC
Q 037951 487 GNLKALRCFDVSNNDLSGEIPS--ELGLCSSLEEIYLAENFFNGFIPS----FFRTSRGIRKVDLSRNNF 550 (627)
Q Consensus 487 ~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~L~~n~i~~~~~~----~l~~l~~L~~L~ls~n~l 550 (627)
..+++|++|++++|.++ .+|. .+..+++|+.|++++|.++.. |. .+..+++|+.||+++|..
T Consensus 85 ~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 85 QALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp HHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCH
T ss_pred hcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCH
Confidence 33444444444444443 2332 344444444444444444322 22 234444444444444433
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=1.5e-15 Score=139.14 Aligned_cols=147 Identities=24% Similarity=0.283 Sum_probs=72.8
Q ss_pred CCCCcEeeccCCcccccCCh------hhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccc
Q 037951 392 LLNLQGLDFGGNHFSGEIPS------TLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNIS 465 (627)
Q Consensus 392 l~~L~~L~L~~n~~~~~~~~------~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 465 (627)
...++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.+. .+|..+..++
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 33444444444444433333 45555555555555555553 33 4555555555555555554 4444444444
Q ss_pred cCccEEEccCCccccCCCccccCCCCCCEEEccCCcccccCC-ccccCCCCCCEEECCCCcccccCCh----------hc
Q 037951 466 SLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGEIP-SELGLCSSLEEIYLAENFFNGFIPS----------FF 534 (627)
Q Consensus 466 ~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~----------~l 534 (627)
.+ ++|++++|++.+ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..|. .+
T Consensus 94 ~L-~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 94 TL-EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HC-SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred cC-CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 44 455555555543 22 34455555555555555552111 2455555556666665555544332 24
Q ss_pred cCCCCCCEEE
Q 037951 535 RTSRGIRKVD 544 (627)
Q Consensus 535 ~~l~~L~~L~ 544 (627)
..+++|+.||
T Consensus 171 ~~l~~L~~Ld 180 (198)
T 1ds9_A 171 KRLPNLKKLD 180 (198)
T ss_dssp HHCSSCSEEC
T ss_pred HhCCCcEEEC
Confidence 4555555554
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=1.2e-12 Score=116.34 Aligned_cols=105 Identities=27% Similarity=0.289 Sum_probs=70.6
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCC
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMN 155 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 155 (627)
++++++++.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|++++..+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 55677777776 4555443 67777777777777666666777777777777777777555555666777777777777
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCC
Q 037951 156 NLTGGIPPFLGNLTSLEVVSLAGNPFGG 183 (627)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 183 (627)
.+++..+..|.++++|++|++++|.+..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 7665555556666677777777666653
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=3.4e-15 Score=136.87 Aligned_cols=133 Identities=17% Similarity=0.181 Sum_probs=97.1
Q ss_pred hhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccC
Q 037951 388 EMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSL 467 (627)
Q Consensus 388 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l 467 (627)
.+..+++|+.|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+ +| .+..++.+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 66777777777777777764 45 6667777777777777777 456666666777888887777764 44 46667777
Q ss_pred ccEEEccCCccccCCC-ccccCCCCCCEEEccCCcccccCCc----------cccCCCCCCEEECCCCcccc
Q 037951 468 SVSLDLAENHFVGSIP-PRIGNLKALRCFDVSNNDLSGEIPS----------ELGLCSSLEEIYLAENFFNG 528 (627)
Q Consensus 468 l~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~----------~l~~l~~L~~L~L~~n~i~~ 528 (627)
++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|. .+..+++|+.|+ ++.++.
T Consensus 118 -~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 -RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp -SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred -CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 788888888764322 3578889999999999998766554 278899999886 777654
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.40 E-value=2e-12 Score=115.20 Aligned_cols=104 Identities=26% Similarity=0.273 Sum_probs=75.6
Q ss_pred CEEECCCCCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCC
Q 037951 76 REINLMNNTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMN 155 (627)
Q Consensus 76 ~~L~Ls~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n 155 (627)
+.++++++.++ .+|..+. ++|++|+|++|++++..|..|.++++|++|++++|++++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777877775 5666554 77888888888887766777778888888888888777555555677777777777777
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCC
Q 037951 156 NLTGGIPPFLGNLTSLEVVSLAGNPFG 182 (627)
Q Consensus 156 ~l~~~~~~~l~~l~~L~~L~L~~n~~~ 182 (627)
.+++..+..+.++++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 777555555777777777777777766
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=3.2e-12 Score=113.54 Aligned_cols=105 Identities=27% Similarity=0.259 Sum_probs=73.6
Q ss_pred CCEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCC
Q 037951 99 LETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAG 178 (627)
Q Consensus 99 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 178 (627)
.+.+++++|.++ .+|..+. ++|++|++++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467778777777 4565543 6777777777777766677777777777777777777765555667777777777777
Q ss_pred CCCCCCCCCccCCCCCccEEEeeCcccc
Q 037951 179 NPFGGNIPDSLGQLKELKTLGIGGNNLS 206 (627)
Q Consensus 179 n~~~~~~~~~l~~l~~L~~L~l~~n~~~ 206 (627)
|++++..+..|..+++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7777555556666777777777776665
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.36 E-value=9e-11 Score=119.77 Aligned_cols=329 Identities=11% Similarity=0.104 Sum_probs=142.4
Q ss_pred CcccCCCC-CCCEEeCCCCcCcccCCccccCCCCCCEEEccCcc---ccccCCccccCCCCCCeeeCCCCCCCCCCCCCC
Q 037951 90 PLEFGRLR-RLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNK---LVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFL 165 (627)
Q Consensus 90 ~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~---l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 165 (627)
..+|.++. .|+.+.+..+ ++.+-..+|.++.+|+.+.+..+. ++.....+|.++.+|+.+.+..+ ++......|
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 44555553 4666666543 444555566666666666665542 44444555666666666665543 222334456
Q ss_pred CCCCCCCEEECCCCCCCCCCCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCc
Q 037951 166 GNLTSLEVVSLAGNPFGGNIPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLK 245 (627)
Q Consensus 166 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~ 245 (627)
..+.+|+.+.+..+. .......|..+..|+.+.+..+ +...-..+|. ...|+.+.+..+... +....+..+.++.
T Consensus 134 ~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~--i~~~af~~c~~l~ 208 (394)
T 4gt6_A 134 HHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR--IGTNAFSECFALS 208 (394)
T ss_dssp TTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE--ECTTTTTTCTTCC
T ss_pred hhhccccccccccee-eeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc--cccchhhhccccc
Confidence 666667766665432 2234455666666666666543 2212222332 345666555433211 1111111133333
Q ss_pred eeccCCccccccCCccccCCCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEE
Q 037951 246 LFQTNENFFSGSIPISLSNASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVL 325 (627)
Q Consensus 246 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L 325 (627)
................+........ ....+.....+..+.+... ++.+. ..+|.++..|+.+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ip~~-v~~i~------~~aF~~c~~L~~i 270 (394)
T 4gt6_A 209 TITSDSESYPAIDNVLYEKSANGDY-----------ALIRYPSQREDPAFKIPNG-VARIE------THAFDSCAYLASV 270 (394)
T ss_dssp EEEECCSSSCBSSSCEEEECTTSCE-----------EEEECCTTCCCSEEECCTT-EEEEC------TTTTTTCSSCCEE
T ss_pred eecccccccccccceeecccccccc-----------cccccccccccceEEcCCc-ceEcc------cceeeecccccEE
Confidence 3322221111000000000000000 0000111112222222110 11100 1245555556665
Q ss_pred EccCcccccccchhHHhccccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcc
Q 037951 326 SLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHF 405 (627)
Q Consensus 326 ~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~ 405 (627)
.+..+... .....|.... .|+.+.+.. .++.....+|.++.+|+.+++..+ ++.....+|.+|.+|+.+.+..+ +
T Consensus 271 ~lp~~~~~-I~~~aF~~c~-~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v 345 (394)
T 4gt6_A 271 KMPDSVVS-IGTGAFMNCP-ALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-V 345 (394)
T ss_dssp ECCTTCCE-ECTTTTTTCT-TCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-C
T ss_pred ecccccce-ecCccccccc-ccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-c
Confidence 55443221 2233333333 455555532 233233445666666666666543 33344455666666666666543 4
Q ss_pred cccCChhhhCCCCCCEEEccCCccccccChhhcCCCCCCEEECcCC
Q 037951 406 SGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERLAILEMFAN 451 (627)
Q Consensus 406 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 451 (627)
+..-..+|.+|++|+.+++.++.... ..+..+.+|+.+.+..+
T Consensus 346 ~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 346 TKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--------
T ss_pred CEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCC
Confidence 43444556666666666666654331 23455556666655443
No 145
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.36 E-value=1.5e-10 Score=118.11 Aligned_cols=336 Identities=10% Similarity=0.064 Sum_probs=182.2
Q ss_pred CcccCCccccCCC-CCCEEEccCccccccCCccccCCCCCCeeeCCCCC---CCCCCCCCCCCCCCCCEEECCCCCCCCC
Q 037951 109 LVGKIPANLSYCS-RLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNN---LTGGIPPFLGNLTSLEVVSLAGNPFGGN 184 (627)
Q Consensus 109 i~~~~~~~~~~l~-~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~---l~~~~~~~l~~l~~L~~L~L~~n~~~~~ 184 (627)
++.+-..+|.++. .|+.+.+..+ ++.+...+|.++.+|+.+.+..+. ++......|.++.+|+.+.+..+ +...
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 3445566788884 6999999865 666778899999999999998764 55445677899999999888765 4435
Q ss_pred CCCccCCCCCccEEEeeCccccccCCccccCCCCCcEEEeecccCccCCChhhhhcCCCCceeccCCccccccCCccccC
Q 037951 185 IPDSLGQLKELKTLGIGGNNLSGSIPPSIYNLSFLVIFSVSENQMHGSLPPSLGLYFPNLKLFQTNENFFSGSIPISLSN 264 (627)
Q Consensus 185 ~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 264 (627)
....|..+.+|+.+.+..+. ...-...+..+..|+.+.+..+ +. .+....+.
T Consensus 129 ~~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~------------------------- 180 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT------------------------- 180 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-------------------------
T ss_pred hhhhhhhhccccccccccee-eeecccceecccccccccccce-ee-Eecccccc-------------------------
Confidence 56788999999999997543 3355567888889998887654 22 11111111
Q ss_pred CCCCcEeecccccccccCccCcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhcc
Q 037951 265 ASKLEYVEIASNSFFGKLSVNFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLS 344 (627)
Q Consensus 265 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~ 344 (627)
...|+.+.+..+. .......|..+..++............... + +..........+.. + ..
T Consensus 181 ~~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~-------~----~~- 241 (394)
T 4gt6_A 181 GTALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAIDNV---L---YEKSANGDYALIRY-------P----SQ- 241 (394)
T ss_dssp TCCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBSSSC---E---EEECTTSCEEEEEC-------C----TT-
T ss_pred ccceeEEEECCcc-cccccchhhhccccceecccccccccccce---e---eccccccccccccc-------c----cc-
Confidence 2334444443321 122233355555555555444332221110 0 00000000000000 0 00
Q ss_pred ccccEEEeecccccccCcccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEc
Q 037951 345 SQLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFL 424 (627)
Q Consensus 345 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 424 (627)
..+..+.+.. .+......+|.++..|+.+.+.++... ....+|..+++|+.+.+. +.++..-..+|.+|.+|+.+++
T Consensus 242 ~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~l 318 (394)
T 4gt6_A 242 REDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDI 318 (394)
T ss_dssp CCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEEC
T ss_pred cccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEe
Confidence 0122222211 112223345666666776666544332 444556667777777765 3344344456677777777777
Q ss_pred cCCccccccChhhcCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCcc
Q 037951 425 GDNNLSGVIPSSLGNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDL 502 (627)
Q Consensus 425 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 502 (627)
.++ ++.....+|.+|.+|+.+.+..+ +...-...|.++.+| +.+++.++.... .++..+.+|+.+.+..+.+
T Consensus 319 p~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L-~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 319 PEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTAL-NNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTC-CEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCC-CEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 653 44455566777777777777543 331222345556666 677777665432 3455667777777766543
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.35 E-value=6.4e-12 Score=111.95 Aligned_cols=104 Identities=24% Similarity=0.251 Sum_probs=75.8
Q ss_pred CEEeCCCCcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCCCCCCCCCCCCCCCCCCCCCEEECCCC
Q 037951 100 ETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLTGGIPPFLGNLTSLEVVSLAGN 179 (627)
Q Consensus 100 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 179 (627)
+.+++++|.++ .+|..+. ++|++|++++|++++..|..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888776 5666553 67888888888887666777777777888888887777655555677777777777777
Q ss_pred CCCCCCCCccCCCCCccEEEeeCcccc
Q 037951 180 PFGGNIPDSLGQLKELKTLGIGGNNLS 206 (627)
Q Consensus 180 ~~~~~~~~~l~~l~~L~~L~l~~n~~~ 206 (627)
.+.+..+..|..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 777555555777777777777777665
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.28 E-value=2.5e-13 Score=136.62 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=21.2
Q ss_pred ccCCCCCCEEEccCCccccc----CCccccCCCCCCEEECCCCccccc
Q 037951 486 IGNLKALRCFDVSNNDLSGE----IPSELGLCSSLEEIYLAENFFNGF 529 (627)
Q Consensus 486 l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~ 529 (627)
+...++|++|+|++|.+++. ++..+..+++|++|+|++|.|++.
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 33444555555555555422 222333445555555555555443
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=1e-12 Score=132.26 Aligned_cols=160 Identities=17% Similarity=0.185 Sum_probs=101.1
Q ss_pred CCCCcEeeccCCcccccCChhhhC-----CCCCCEEEccCCccccccChhh-cCCCCCCEEECcCCcCcccCCcccc---
Q 037951 392 LLNLQGLDFGGNHFSGEIPSTLGN-----LSSLYEIFLGDNNLSGVIPSSL-GNLERLAILEMFANELSGTIPGDIF--- 462 (627)
Q Consensus 392 l~~L~~L~L~~n~~~~~~~~~~~~-----~~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~--- 462 (627)
++.|+.|++++|.++......+.. .++|++|++++|.++......+ ..+++|+.|++++|.+.......+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467889999999987543333322 3688999999998865433333 2456788888888877643322221
Q ss_pred --ccccCccEEEccCCccccC----CCccccCCCCCCEEEccCCccccc----CCccccCCCCCCEEECCCCccccc---
Q 037951 463 --NISSLSVSLDLAENHFVGS----IPPRIGNLKALRCFDVSNNDLSGE----IPSELGLCSSLEEIYLAENFFNGF--- 529 (627)
Q Consensus 463 --~~~~ll~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~--- 529 (627)
..+.+ ++|++++|.+... ++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|.|++.
T Consensus 151 ~~~~~~L-~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQI-TTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCC-CEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCcc-ceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 23445 6777777776532 223345667777777777776632 244556666777777777777653
Q ss_pred -CChhccCCCCCCEEECCCCcCcc
Q 037951 530 -IPSFFRTSRGIRKVDLSRNNFFG 552 (627)
Q Consensus 530 -~~~~l~~l~~L~~L~ls~n~l~~ 552 (627)
++..+..+++|++||+++|.+..
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCH
Confidence 33444456777777777777764
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.17 E-value=8.4e-11 Score=117.91 Aligned_cols=107 Identities=24% Similarity=0.255 Sum_probs=57.5
Q ss_pred CCcccceeecCCC-CcceecccccCCCCCCCEEECCC-CCCcccCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCC
Q 037951 47 CEWEGITCDLRSK-ALSGLLSPQIGNLSFLREINLMN-NTIQGEIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLT 124 (627)
Q Consensus 47 c~~~~~~c~l~~~-~l~~~~~~~l~~l~~L~~L~Ls~-~~~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 124 (627)
|.|..+.| +++ +++. +|. +..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|..|.++++|+
T Consensus 8 C~~~~v~~--~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 8 HGSSGLRC--TRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp SSSSCEEC--CSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred ccCCEEEc--CCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 66666544 444 4554 344 55566666666664 566554445566666666666666666555555555555555
Q ss_pred EEEccCccccccCCccccCCCCCCeeeCCCCCCC
Q 037951 125 VLVLGNNKLVGSIPFEFVSLYKLKQLALPMNNLT 158 (627)
Q Consensus 125 ~L~ls~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 158 (627)
+|+|++|++++..+..+..+. |++|++.+|.+.
T Consensus 84 ~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred EEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 555555555533333333332 444444444443
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=1.6e-10 Score=115.87 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=88.9
Q ss_pred CEEECCCC-CCcccCCcccCCCCCCCEEeCCC-CcCcccCCccccCCCCCCEEEccCccccccCCccccCCCCCCeeeCC
Q 037951 76 REINLMNN-TIQGEIPLEFGRLRRLETLLLSD-NSLVGKIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSLYKLKQLALP 153 (627)
Q Consensus 76 ~~L~Ls~~-~~~~~~~~~~~~l~~L~~L~L~~-n~i~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~l~ 153 (627)
..++++++ +++ .+|. |..+++|++|+|++ |.+++..+..|.++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34688887 887 5777 99999999999996 99997777889999999999999999998888889999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCC
Q 037951 154 MNNLTGGIPPFLGNLTSLEVVSLAGNPFGG 183 (627)
Q Consensus 154 ~n~l~~~~~~~l~~l~~L~~L~L~~n~~~~ 183 (627)
+|.+++..+..+..++ |++|++.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 9999866555566555 8899998888874
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.08 E-value=2e-08 Score=101.86 Aligned_cols=84 Identities=13% Similarity=0.034 Sum_probs=38.3
Q ss_pred cccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCCC
Q 037951 364 GIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLERL 443 (627)
Q Consensus 364 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L 443 (627)
++.++.+|+.+.+..+ +......+|.+|++|+.+.+.++.++..-..+|.+|.+|+.+++.++ ++.....+|.+|.+|
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 3444444444444322 22222334445555555555544444333444555555555555432 333334445555555
Q ss_pred CEEECc
Q 037951 444 AILEMF 449 (627)
Q Consensus 444 ~~L~l~ 449 (627)
+.+.+.
T Consensus 336 ~~i~ip 341 (379)
T 4h09_A 336 STISYP 341 (379)
T ss_dssp CCCCCC
T ss_pred CEEEEC
Confidence 555443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.02 E-value=5e-08 Score=98.88 Aligned_cols=146 Identities=11% Similarity=0.059 Sum_probs=91.5
Q ss_pred CcCCCCCcCEEeccCccCCCCCCCCccccccCCCCCcccEEEccCcccccccchhHHhccccccEEEeecccccccCccc
Q 037951 285 NFGGMKNLSYLILEYNNLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGALPHSIANLSSQLQILVLGTNQLYGSIPSG 364 (627)
Q Consensus 285 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 364 (627)
.+.....++.+.+..+ +..+. ..++.++..|+.+.+..+ ++......+.... +++.+.+..+ +......+
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~------~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~-~l~~i~l~~~-i~~i~~~a 281 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLG------DGAFYGMKALDEIAIPKN-VTSIGSFLLQNCT-ALKTLNFYAK-VKTVPYLL 281 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEEC------TTTTTTCSSCCEEEECTT-CCEECTTTTTTCT-TCCEEEECCC-CSEECTTT
T ss_pred ccccccccceeeeccc-eeEEc------cccccCCccceEEEcCCC-ccEeCccccceee-hhcccccccc-ceeccccc
Confidence 3445556666655433 22111 124556666777776654 4434444454444 6777777543 33344556
Q ss_pred ccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhcCCCC
Q 037951 365 IGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLGNLER 442 (627)
Q Consensus 365 ~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~l~~ 442 (627)
|.++++|+.+.+.++.++.....+|.+|.+|+.+++..+ ++..-..+|.+|.+|+.+.+..+ ++.....+|.++..
T Consensus 282 F~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp TTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred cccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 778888888888877777666677888888888888654 55455567888888888888654 55455666776643
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=8e-10 Score=110.05 Aligned_cols=164 Identities=11% Similarity=0.169 Sum_probs=97.5
Q ss_pred chhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccCCccccccChhhc--CCCCCCEEECcCC--cCcccCCccc
Q 037951 386 PKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGDNNLSGVIPSSLG--NLERLAILEMFAN--ELSGTIPGDI 461 (627)
Q Consensus 386 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~--~l~~L~~L~l~~n--~l~~~~~~~~ 461 (627)
...+..+|+|+.|++++|.-. .++. + ..++|++|++..|.++......+. .+++|+.|+++.+ ...+. ..+
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~--~~~ 239 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD--GDM 239 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC--SCG
T ss_pred HHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc--hhH
Confidence 344566677777777776311 2222 2 267777777777776544333333 5677777776432 11100 000
Q ss_pred cccccCccEEEccCCccccCCCccc--cCCCCCCEEEccCCcccccCCccc---cCCCCCCEEECCCCccccc----CCh
Q 037951 462 FNISSLSVSLDLAENHFVGSIPPRI--GNLKALRCFDVSNNDLSGEIPSEL---GLCSSLEEIYLAENFFNGF----IPS 532 (627)
Q Consensus 462 ~~~~~ll~~L~l~~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~~~l---~~l~~L~~L~L~~n~i~~~----~~~ 532 (627)
. .+ ...+ ..+++|++|++++|.+.+..+..+ ..+++|++|+|+.|.+++. ++.
T Consensus 240 ~---~l---------------~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~ 301 (362)
T 2ra8_A 240 N---VF---------------RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLD 301 (362)
T ss_dssp G---GT---------------GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHT
T ss_pred H---HH---------------HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHh
Confidence 0 00 0111 346889999999998875443333 2578899999999988874 334
Q ss_pred hccCCCCCCEEECCCCcCccccchhcccCcCCeeeCcCCc
Q 037951 533 FFRTSRGIRKVDLSRNNFFGQIPIFLEALSLEYLNLSFND 572 (627)
Q Consensus 533 ~l~~l~~L~~L~ls~n~l~~~~p~~~~~~~L~~L~ls~n~ 572 (627)
.+..+++|+.|++++|.++...-..+...-...+++++++
T Consensus 302 ~L~~l~~L~~L~L~~n~i~d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 302 HVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp THHHHTTCSEEECCSBBCCHHHHHHHHHHCCSEEECCSBC
T ss_pred hcccCCcceEEECCCCcCCHHHHHHHHHHcCCEEEecCCc
Confidence 4456789999999999887533333322113568888876
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=8.4e-09 Score=102.65 Aligned_cols=160 Identities=16% Similarity=0.171 Sum_probs=86.6
Q ss_pred ccccCCCCCCEEeCCCCccccccchhhcCCCCCcEeeccCCcccccCChhhh--CCCCCCEEEccC--Cccccc-----c
Q 037951 363 SGIGNLVNLYSLQTEENQFTGSIPKEMGKLLNLQGLDFGGNHFSGEIPSTLG--NLSSLYEIFLGD--NNLSGV-----I 433 (627)
Q Consensus 363 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~--~~~~L~~L~l~~--n~~~~~-----~ 433 (627)
..+..+|+|+.|++++|.-. .++. + .+++|+.|++..|.+.......+. .+|+|++|+|+. +...+. +
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 34455667777777665211 1222 2 267777777777776544333333 577888887753 111111 0
Q ss_pred Chhh--cCCCCCCEEECcCCcCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc----CC
Q 037951 434 PSSL--GNLERLAILEMFANELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE----IP 507 (627)
Q Consensus 434 ~~~l--~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~ 507 (627)
...+ ..+++|+.|++.+|.+.+..+..+.. ...+++|++|+|+.|.+++. ++
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~----------------------a~~~~~L~~LdLs~n~L~d~G~~~L~ 300 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE----------------------SDILPQLETMDISAGVLTDEGARLLL 300 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH----------------------CSSGGGCSEEECCSSCCBHHHHHHHH
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh----------------------CccCCCCCEEECCCCCCChHHHHHHH
Confidence 0111 23566777777666654322111110 01346777777777777643 33
Q ss_pred ccccCCCCCCEEECCCCcccccCChhccC-CCCCCEEECCCCc
Q 037951 508 SELGLCSSLEEIYLAENFFNGFIPSFFRT-SRGIRKVDLSRNN 549 (627)
Q Consensus 508 ~~l~~l~~L~~L~L~~n~i~~~~~~~l~~-l~~L~~L~ls~n~ 549 (627)
..+..+++|+.|++++|.++......+.. + ...++++++.
T Consensus 301 ~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 301 DHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp TTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred hhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 33455677888888877776554444432 2 3557777765
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.43 E-value=8.3e-08 Score=86.04 Aligned_cols=118 Identities=11% Similarity=0.157 Sum_probs=57.5
Q ss_pred hhhcCCCCCCEEECcCC-cCcccCCccccccccCccEEEccCCccccCCCccccCCCCCCEEEccCCccccc----CCcc
Q 037951 435 SSLGNLERLAILEMFAN-ELSGTIPGDIFNISSLSVSLDLAENHFVGSIPPRIGNLKALRCFDVSNNDLSGE----IPSE 509 (627)
Q Consensus 435 ~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~ll~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~----~~~~ 509 (627)
..+...+.|++|++++| .+.......+ ...+...++|++|+|++|.+... +...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l---------------------~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~ 88 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKAC---------------------AEALKTNTYVKKFSIVGTRSNDPVAFALAEM 88 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHH---------------------HHHHTTCCSCCEEECTTSCCCHHHHHHHHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHH---------------------HHHHHhCCCcCEEECcCCCCChHHHHHHHHH
Confidence 44566777888888777 6653211111 12233344555555555555422 2233
Q ss_pred ccCCCCCCEEECCCCccccc----CChhccCCCCCCEEEC--CCCcCccc----cchhcccCc-CCeeeCcCCcc
Q 037951 510 LGLCSSLEEIYLAENFFNGF----IPSFFRTSRGIRKVDL--SRNNFFGQ----IPIFLEALS-LEYLNLSFNDF 573 (627)
Q Consensus 510 l~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~l--s~n~l~~~----~p~~~~~~~-L~~L~ls~n~l 573 (627)
+...++|++|+|++|.|+.. +...+...++|++|++ ++|.+... +...+...+ |++|++++|.+
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 34445555555555555433 2344444555555555 55555431 223333333 55555555554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.36 E-value=1.1e-07 Score=85.15 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=32.3
Q ss_pred CCCCEEeCCCCccccc----cchhhcCCCCCcEeec--cCCccccc----CChhhhCCCCCCEEEccCCccc
Q 037951 369 VNLYSLQTEENQFTGS----IPKEMGKLLNLQGLDF--GGNHFSGE----IPSTLGNLSSLYEIFLGDNNLS 430 (627)
Q Consensus 369 ~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L--~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~ 430 (627)
++|++|++++|.+... +...+...++|+.|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4455555555554422 2334445556666666 55665532 2233444566667777666654
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=3.9e-07 Score=85.78 Aligned_cols=67 Identities=18% Similarity=0.225 Sum_probs=39.5
Q ss_pred cCCCCCCEEEccCCcccc--cCCccccCCCCCCEEECCCCcccccCChhccCCC--CCCEEECCCCcCccccc
Q 037951 487 GNLKALRCFDVSNNDLSG--EIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSR--GIRKVDLSRNNFFGQIP 555 (627)
Q Consensus 487 ~~l~~L~~L~Ls~n~l~~--~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~--~L~~L~ls~n~l~~~~p 555 (627)
.++++|+.|+|++|.+++ .+|..+..+++|+.|+|++|.+++. ..+..+. .|++|++++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345667777777776664 3344555666777777777766654 1222222 66666666666665444
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=1e-06 Score=76.65 Aligned_cols=83 Identities=10% Similarity=0.080 Sum_probs=36.0
Q ss_pred cccEEEeecccccccCcccccCCCCCCEEeCCCCc-cccccchhhcCC----CCCcEeeccCCc-ccccCChhhhCCCCC
Q 037951 346 QLQILVLGTNQLYGSIPSGIGNLVNLYSLQTEENQ-FTGSIPKEMGKL----LNLQGLDFGGNH-FSGEIPSTLGNLSSL 419 (627)
Q Consensus 346 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l----~~L~~L~L~~n~-~~~~~~~~~~~~~~L 419 (627)
.|+.|++++|.++..--..+..+++|+.|++++|. +++..-..+..+ ++|+.|+|++|. +++.-...+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555544333334445555555555552 333222233322 234444444443 333222333344444
Q ss_pred CEEEccCCc
Q 037951 420 YEIFLGDNN 428 (627)
Q Consensus 420 ~~L~l~~n~ 428 (627)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 444444443
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.10 E-value=2.5e-06 Score=80.20 Aligned_cols=102 Identities=22% Similarity=0.209 Sum_probs=69.9
Q ss_pred CCCCCE--EECCCCCCc---ccCCcccCCCCCCCEEeCCCCcCcc--cCCccccCCCCCCEEEccCccccccCCccccCC
Q 037951 72 LSFLRE--INLMNNTIQ---GEIPLEFGRLRRLETLLLSDNSLVG--KIPANLSYCSRLTVLVLGNNKLVGSIPFEFVSL 144 (627)
Q Consensus 72 l~~L~~--L~Ls~~~~~---~~~~~~~~~l~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~~l~~l 144 (627)
.+.|+. ++++.|... +.++....++++|+.|+|++|++++ .+|..+..+++|++|+|++|++.+. ..+..+
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l 217 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKI 217 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGG
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhc
Confidence 344444 666777432 1122222567889999999999886 3456677889999999999988754 334444
Q ss_pred C--CCCeeeCCCCCCCCCCCC-------CCCCCCCCCEEE
Q 037951 145 Y--KLKQLALPMNNLTGGIPP-------FLGNLTSLEVVS 175 (627)
Q Consensus 145 ~--~L~~L~l~~n~l~~~~~~-------~l~~l~~L~~L~ 175 (627)
. +|++|++++|.+.+..|. .+..+++|+.||
T Consensus 218 ~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 218 KGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 4 899999999988765542 356788888875
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.09 E-value=1e-06 Score=76.74 Aligned_cols=83 Identities=10% Similarity=-0.003 Sum_probs=54.3
Q ss_pred cEEEccCCccccCCCccccCCCCCCEEEccCCc-ccccCCccccCC----CCCCEEECCCCc-ccccCChhccCCCCCCE
Q 037951 469 VSLDLAENHFVGSIPPRIGNLKALRCFDVSNND-LSGEIPSELGLC----SSLEEIYLAENF-FNGFIPSFFRTSRGIRK 542 (627)
Q Consensus 469 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l----~~L~~L~L~~n~-i~~~~~~~l~~l~~L~~ 542 (627)
+.||+++|.++...-..+..+++|++|+|++|. +++.--..++.+ ++|++|+|++|. ||+..-..+..+++|+.
T Consensus 64 ~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~ 143 (176)
T 3e4g_A 64 QAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKY 143 (176)
T ss_dssp EEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTCCE
T ss_pred eEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCE
Confidence 666777666655444556677788888888874 664433344443 467788887774 76665556667777888
Q ss_pred EECCCCcCc
Q 037951 543 VDLSRNNFF 551 (627)
Q Consensus 543 L~ls~n~l~ 551 (627)
|++++|+-.
T Consensus 144 L~L~~c~~I 152 (176)
T 3e4g_A 144 LFLSDLPGV 152 (176)
T ss_dssp EEEESCTTC
T ss_pred EECCCCCCC
Confidence 888877643
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.46 E-value=6.9e-05 Score=66.44 Aligned_cols=63 Identities=16% Similarity=0.196 Sum_probs=33.0
Q ss_pred ccCCCCCCEEEccCCccccc----CCccccCCCCCCEEECCCCccccc----CChhccCCCCCCEEECCCC
Q 037951 486 IGNLKALRCFDVSNNDLSGE----IPSELGLCSSLEEIYLAENFFNGF----IPSFFRTSRGIRKVDLSRN 548 (627)
Q Consensus 486 l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~ls~n 548 (627)
+..-+.|++|+|++|.+.+. +.+.+...+.|++|+|++|.|... +.+.+...+.|++|++++|
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 33445556666666655522 233344555666666666666543 2334445555666666543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.28 E-value=7.9e-05 Score=66.07 Aligned_cols=45 Identities=9% Similarity=0.186 Sum_probs=20.6
Q ss_pred CCCcCEEeccCc-cCCCCCCCCccccccCCCCCcccEEEccCcccccc
Q 037951 289 MKNLSYLILEYN-NLGSGESDEMGFMNSLANCSKLQVLSLGGNQFRGA 335 (627)
Q Consensus 289 l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 335 (627)
-+.|+.|+++++ .+...... .+..++...+.|+.|+|++|.+.+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~--~la~aL~~N~~L~~L~L~~n~igd~ 85 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIR--SLIEAACNSKHIEKFSLANTAISDS 85 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHH--HHHHHHTTCSCCCEEECTTSCCBHH
T ss_pred CCCccEEECCCCCCCCHHHHH--HHHHHHhhCCCcCEEEccCCCCChH
Confidence 344555555543 44321111 2333444555566666666655543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.71 E-value=0.0029 Score=52.23 Aligned_cols=56 Identities=18% Similarity=0.348 Sum_probs=38.6
Q ss_pred EEEccCCccc-ccCCccccCCCCCCEEECCCCcccccCChhccCCCCCCEEECCCCcCc
Q 037951 494 CFDVSNNDLS-GEIPSELGLCSSLEEIYLAENFFNGFIPSFFRTSRGIRKVDLSRNNFF 551 (627)
Q Consensus 494 ~L~Ls~n~l~-~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~ls~n~l~ 551 (627)
.++.+++.++ ..+|..+. ++|+.|+|++|.|+...+..|..+++|+.|+|++|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666777664 34554433 46777788888777766677777778888888887764
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.41 E-value=0.005 Score=50.82 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=19.2
Q ss_pred CCCEEeCCCCcCcccCCccccCCCCCCEEEccCccc
Q 037951 98 RLETLLLSDNSLVGKIPANLSYCSRLTVLVLGNNKL 133 (627)
Q Consensus 98 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~n~l 133 (627)
+|++|+|++|+|+...+..|..+++|++|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 455555555555544444455555555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=60.05 E-value=21 Score=27.11 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=21.1
Q ss_pred cCCcccCCCCCCCEEeCCCCcCcccCCccccCCCCCCEEEccC
Q 037951 88 EIPLEFGRLRRLETLLLSDNSLVGKIPANLSYCSRLTVLVLGN 130 (627)
Q Consensus 88 ~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ls~ 130 (627)
.-..+|.++..|+.+.|..+ ++.+-..+|.+|.+|+.+.+..
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33445555555555555443 3334444555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=58.67 E-value=19 Score=27.38 Aligned_cols=40 Identities=8% Similarity=0.041 Sum_probs=18.2
Q ss_pred chhhcCCCCCcEeeccCCcccccCChhhhCCCCCCEEEccC
Q 037951 386 PKEMGKLLNLQGLDFGGNHFSGEIPSTLGNLSSLYEIFLGD 426 (627)
Q Consensus 386 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 426 (627)
..+|.+|++|+.+.+-.+ ++..-..+|.+|.+|+.+.+..
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 334445555555554433 2223333455555555555543
Done!