Query 037952
Match_columns 148
No_of_seqs 149 out of 1249
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:03:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037952.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037952hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0048 Transcription factor, 100.0 4.4E-28 9.6E-33 195.9 11.3 85 2-87 23-122 (238)
2 PLN03212 Transcription repress 99.9 2E-26 4.4E-31 186.5 10.1 90 2-92 39-143 (249)
3 PLN03091 hypothetical protein; 99.9 1.3E-25 2.8E-30 193.6 9.6 91 2-93 28-133 (459)
4 PF13921 Myb_DNA-bind_6: Myb-l 99.3 3.9E-12 8.4E-17 81.9 5.2 49 2-53 12-60 (60)
5 KOG0050 mRNA splicing protein 99.1 9.7E-11 2.1E-15 103.3 4.5 75 2-78 21-109 (617)
6 COG5147 REB1 Myb superfamily p 99.0 4.9E-10 1.1E-14 99.5 4.7 74 2-77 34-122 (512)
7 KOG0049 Transcription factor, 98.8 9.7E-09 2.1E-13 93.1 5.7 68 11-80 331-414 (939)
8 KOG0049 Transcription factor, 98.7 2.6E-08 5.7E-13 90.3 7.1 73 2-76 374-462 (939)
9 KOG0051 RNA polymerase I termi 98.4 3.6E-07 7.8E-12 82.5 6.0 69 8-78 402-513 (607)
10 PF00249 Myb_DNA-binding: Myb- 98.3 6.4E-07 1.4E-11 55.3 3.5 31 42-72 1-48 (48)
11 PLN03212 Transcription repress 98.3 6E-07 1.3E-11 73.4 4.2 43 36-78 19-78 (249)
12 PF00249 Myb_DNA-binding: Myb- 98.2 9.7E-07 2.1E-11 54.5 2.7 34 2-36 15-48 (48)
13 KOG0048 Transcription factor, 98.1 2E-06 4.3E-11 69.7 2.2 45 37-81 4-65 (238)
14 smart00717 SANT SANT SWI3, AD 98.0 7.5E-06 1.6E-10 48.8 3.1 32 42-73 1-48 (49)
15 PF13921 Myb_DNA-bind_6: Myb-l 97.9 5.6E-06 1.2E-10 52.9 1.5 29 45-73 1-44 (60)
16 PLN03091 hypothetical protein; 97.9 8E-06 1.7E-10 71.6 2.5 40 37-76 9-65 (459)
17 cd00167 SANT 'SWI3, ADA2, N-Co 97.6 7.1E-05 1.5E-09 43.8 3.4 28 44-71 1-44 (45)
18 smart00717 SANT SANT SWI3, AD 97.4 0.00014 3.1E-09 43.1 3.0 35 2-38 15-49 (49)
19 cd00167 SANT 'SWI3, ADA2, N-Co 97.2 0.00043 9.3E-09 40.4 2.8 33 2-36 13-45 (45)
20 COG5147 REB1 Myb superfamily p 96.8 0.0028 6E-08 57.0 6.3 46 11-58 312-359 (512)
21 TIGR02894 DNA_bind_RsfA transc 96.6 0.0027 5.9E-08 49.1 3.8 39 40-78 2-61 (161)
22 PF13837 Myb_DNA-bind_4: Myb/S 95.3 0.029 6.3E-07 37.9 3.9 19 59-78 51-69 (90)
23 PF08914 Myb_DNA-bind_2: Rap1 95.0 0.028 6.1E-07 37.2 3.0 34 42-75 2-60 (65)
24 PRK13923 putative spore coat p 94.8 0.035 7.5E-07 43.4 3.6 37 40-76 3-60 (170)
25 PF13873 Myb_DNA-bind_5: Myb/S 93.3 0.2 4.4E-06 33.2 4.5 17 42-58 2-18 (78)
26 PF13837 Myb_DNA-bind_4: Myb/S 93.2 0.065 1.4E-06 36.1 2.1 25 10-34 36-62 (90)
27 PF09111 SLIDE: SLIDE; InterP 92.5 0.24 5.1E-06 36.5 4.4 37 38-74 45-112 (118)
28 KOG0051 RNA polymerase I termi 90.9 0.38 8.3E-06 44.2 4.8 58 13-73 355-429 (607)
29 PF12776 Myb_DNA-bind_3: Myb/S 90.1 0.54 1.2E-05 32.0 4.0 16 59-74 49-64 (96)
30 PF13325 MCRS_N: N-terminal re 88.0 1.2 2.6E-05 35.7 5.0 56 23-78 33-132 (199)
31 KOG0457 Histone acetyltransfer 84.6 0.62 1.3E-05 41.2 2.0 33 2-36 86-118 (438)
32 KOG4282 Transcription factor G 83.9 1.8 4E-05 36.5 4.5 33 42-74 54-115 (345)
33 KOG0457 Histone acetyltransfer 78.1 3.7 8E-05 36.5 4.5 34 37-70 67-116 (438)
34 TIGR01557 myb_SHAQKYF myb-like 77.3 2.7 5.8E-05 26.9 2.6 34 2-36 17-54 (57)
35 TIGR01557 myb_SHAQKYF myb-like 75.5 5.5 0.00012 25.5 3.7 17 42-58 3-19 (57)
36 PLN03142 Probable chromatin-re 73.1 4 8.7E-05 40.0 3.7 48 26-75 908-987 (1033)
37 KOG0050 mRNA splicing protein 71.3 1.8 3.8E-05 39.5 0.8 24 11-36 80-103 (617)
38 KOG4282 Transcription factor G 70.1 2.9 6.3E-05 35.3 1.9 28 9-36 84-113 (345)
39 KOG2656 DNA methyltransferase 69.4 10 0.00022 33.5 5.0 46 29-78 121-187 (445)
40 PF11626 Rap1_C: TRF2-interact 67.9 4.2 9.2E-05 27.8 2.0 18 38-55 43-60 (87)
41 PF13325 MCRS_N: N-terminal re 67.4 6.6 0.00014 31.4 3.2 30 44-73 1-47 (199)
42 TIGR02894 DNA_bind_RsfA transc 64.4 3.3 7.1E-05 32.2 1.0 24 12-37 33-56 (161)
43 smart00595 MADF subfamily of S 61.4 6.4 0.00014 26.2 1.9 22 11-34 29-50 (89)
44 PRK13923 putative spore coat p 54.2 7.1 0.00015 30.6 1.3 24 12-37 34-57 (170)
45 PF10545 MADF_DNA_bdg: Alcohol 44.9 17 0.00036 23.5 1.8 18 15-32 32-49 (85)
46 COG2992 Bax Uncharacterized Fl 41.1 14 0.0003 30.5 1.1 35 40-74 93-132 (262)
47 PF09019 EcoRII-C: EcoRII C te 40.3 6.6 0.00014 30.6 -0.8 11 26-36 96-106 (164)
48 PF08914 Myb_DNA-bind_2: Rap1 39.8 23 0.00051 23.2 1.8 34 7-41 29-62 (65)
49 PF05920 Homeobox_KN: Homeobox 38.4 83 0.0018 18.4 4.0 25 46-70 12-36 (40)
50 COG5114 Histone acetyltransfer 38.3 17 0.00036 31.6 1.2 34 2-37 77-110 (432)
51 PF01388 ARID: ARID/BRIGHT DNA 31.7 39 0.00085 22.7 2.0 31 8-38 56-90 (92)
52 PF07325 Curto_V2: Curtovirus 29.3 1.1E+02 0.0024 22.5 4.0 31 25-57 20-54 (126)
53 PF04504 DUF573: Protein of un 26.8 1.3E+02 0.0028 21.0 4.0 16 43-58 5-20 (98)
54 KOG1279 Chromatin remodeling f 24.7 78 0.0017 28.9 3.1 30 41-70 252-296 (506)
55 COG5259 RSC8 RSC chromatin rem 23.0 64 0.0014 29.4 2.2 29 3-34 294-322 (531)
56 KOG3200 Uncharacterized conser 21.8 69 0.0015 25.7 2.0 33 45-80 21-53 (224)
57 COG5114 Histone acetyltransfer 21.1 1.3E+02 0.0027 26.4 3.6 31 40-70 61-107 (432)
No 1
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.95 E-value=4.4e-28 Score=195.93 Aligned_cols=85 Identities=58% Similarity=1.006 Sum_probs=77.0
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHHHHHHHhhc---------------CchhHHHH
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEEDKLIIKLHR---------------RTDNEIKN 66 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd~~l~~l~~---------------Rt~~~ikn 66 (148)
-|+++|..+|-.+ |+.+||+|||||||+||+|||+|+|++|.||+|||++||+||+ ||||+|||
T Consensus 23 ~V~~~G~~~W~~i-~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN 101 (238)
T KOG0048|consen 23 SIKSFGKHNGTAL-PKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKN 101 (238)
T ss_pred HHHHhCCCCcchh-hhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHH
Confidence 3788999866555 8899999999999999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCC
Q 037952 67 CWNTHIKRKLLNHGLDPQTHH 87 (148)
Q Consensus 67 rw~~~~~~~~~~~~~~~~~~~ 87 (148)
+|+++||||+.....++.+..
T Consensus 102 ~Wnt~lkkkl~~~~~~~~~~~ 122 (238)
T KOG0048|consen 102 HWNTHLKKKLLKMGIDPSTHR 122 (238)
T ss_pred HHHHHHHHHHHHcCCCCCccc
Confidence 999999999998776666543
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.94 E-value=2e-26 Score=186.52 Aligned_cols=90 Identities=56% Similarity=1.012 Sum_probs=81.0
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHHHHHHHhhc---------------CchhHHHH
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEEDKLIIKLHR---------------RTDNEIKN 66 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd~~l~~l~~---------------Rt~~~ikn 66 (148)
+|+++|..+|.. ||+.+|++|++||||+||.|||+|+|++++||+|||++|+++|. ||+++|||
T Consensus 39 lV~kyG~~nW~~-IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKN 117 (249)
T PLN03212 39 FIKKEGEGRWRS-LPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKN 117 (249)
T ss_pred HHHHhCcccHHH-HHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHH
Confidence 578899877655 56667667999999999999999999999999999999999887 99999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCC
Q 037952 67 CWNTHIKRKLLNHGLDPQTHHPLNQI 92 (148)
Q Consensus 67 rw~~~~~~~~~~~~~~~~~~~p~~~~ 92 (148)
||+.++++++...++++.+++|+...
T Consensus 118 RWns~LrK~l~r~~i~p~~~kp~~~~ 143 (249)
T PLN03212 118 YWNTHLRKKLLRQGIDPQTHKPLDAN 143 (249)
T ss_pred HHHHHHhHHHHhcCCCCCCCCCCCcc
Confidence 99999999999999999999887654
No 3
>PLN03091 hypothetical protein; Provisional
Probab=99.92 E-value=1.3e-25 Score=193.58 Aligned_cols=91 Identities=53% Similarity=0.960 Sum_probs=82.2
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHHHHHHHhhc---------------CchhHHHH
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEEDKLIIKLHR---------------RTDNEIKN 66 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd~~l~~l~~---------------Rt~~~ikn 66 (148)
+|++||..+|.. ||+.+|++|++||||+||.|||+|+|++++||+|||++||++|. ||+++|||
T Consensus 28 ~V~kyG~~nWs~-IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKN 106 (459)
T PLN03091 28 HITKYGHGCWSS-VPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKN 106 (459)
T ss_pred HHHHhCcCCHHH-HhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHH
Confidence 688999876655 56777778999999999999999999999999999999999987 99999999
Q ss_pred HHHHHHHHHHHhCCCCCCCCCCCCCCC
Q 037952 67 CWNTHIKRKLLNHGLDPQTHHPLNQIH 93 (148)
Q Consensus 67 rw~~~~~~~~~~~~~~~~~~~p~~~~~ 93 (148)
||+.++||+++..++++.+++++.+..
T Consensus 107 RWnslLKKklr~~~I~p~t~kpl~e~E 133 (459)
T PLN03091 107 LWNSCLKKKLRQRGIDPNTHKPLSEVE 133 (459)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCccccc
Confidence 999999999999999999999886553
No 4
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.30 E-value=3.9e-12 Score=81.93 Aligned_cols=49 Identities=33% Similarity=0.525 Sum_probs=41.3
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHHHHH
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEEDKLI 53 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd~~l 53 (148)
.++++|. -|..||+.+| .|++.||+.||.++|+|.+++++||++||++|
T Consensus 12 ~~~~~g~--~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 12 LVKKYGN--DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp HHHHHTS---HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred HHHHHCc--CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 3556663 5777788888 89999999999999999999999999999986
No 5
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=9.7e-11 Score=103.34 Aligned_cols=75 Identities=19% Similarity=0.436 Sum_probs=68.0
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHHHHHHHhhc--------------CchhHHHHH
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEEDKLIIKLHR--------------RTDNEIKNC 67 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd~~l~~l~~--------------Rt~~~iknr 67 (148)
|+.|||..-|-.+++.+.- .+++||+.||..+|+|.|++..|+.|||+.||.|+. ||+++|-.|
T Consensus 21 av~kyg~nqws~i~sll~~--kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtIa~i~gr~~~qc~eR 98 (617)
T KOG0050|consen 21 AVMKYGKNQWSRIASLLNR--KTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTIADIMGRTSQQCLER 98 (617)
T ss_pred HHHHcchHHHHHHHHHHhh--cchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchHHHHhhhhHHHHHHH
Confidence 6889999888888776666 999999999999999999999999999999999877 999999999
Q ss_pred HHHHHHHHHHh
Q 037952 68 WNTHIKRKLLN 78 (148)
Q Consensus 68 w~~~~~~~~~~ 78 (148)
|+.++-.....
T Consensus 99 y~~ll~~~~s~ 109 (617)
T KOG0050|consen 99 YNNLLDVYVSY 109 (617)
T ss_pred HHHHHHHHHhh
Confidence 99988877665
No 6
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=98.97 E-value=4.9e-10 Score=99.52 Aligned_cols=74 Identities=26% Similarity=0.390 Sum_probs=64.9
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHHHHHHHhhc---------------CchhHHHH
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEEDKLIIKLHR---------------RTDNEIKN 66 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd~~l~~l~~---------------Rt~~~ikn 66 (148)
.+++||..+|-.+++.+.- |+++||+.||.+||+|.|++++|+.|||+.|+.|+. ||..+|.+
T Consensus 34 ~vk~l~~nnws~vas~~~~--~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~wstia~~~d~rt~~~~~e 111 (512)
T COG5147 34 LVKKLGPNNWSKVASLLIS--STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVE 111 (512)
T ss_pred HHhhcccccHHHHHHHhcc--cccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCchhhhhccccCccchHHHHH
Confidence 4678888887777665555 999999999999999999999999999999999877 99999999
Q ss_pred HHHHHHHHHHH
Q 037952 67 CWNTHIKRKLL 77 (148)
Q Consensus 67 rw~~~~~~~~~ 77 (148)
||...+.....
T Consensus 112 ry~~~~~~~~s 122 (512)
T COG5147 112 RYVNTLEDLSS 122 (512)
T ss_pred HHHHHhhhhhc
Confidence 99987776554
No 7
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.77 E-value=9.7e-09 Score=93.09 Aligned_cols=68 Identities=22% Similarity=0.383 Sum_probs=59.0
Q ss_pred hhHHhhhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHHHHHHHhhc----------------CchhHHHHHHHHHHHH
Q 037952 11 YVHVSINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEEDKLIIKLHR----------------RTDNEIKNCWNTHIKR 74 (148)
Q Consensus 11 ~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd~~l~~l~~----------------Rt~~~iknrw~~~~~~ 74 (148)
|-.++-.+.| |+..|---||.+.|+|+|++|+||.+||.+|+.+|+ |++.||+.||...|.+
T Consensus 331 w~kVV~Ympg--r~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~ 408 (939)
T KOG0049|consen 331 WDKVVQYMPG--RTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNR 408 (939)
T ss_pred hHHHHHhcCC--cchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHH
Confidence 4455555555 999999999999999999999999999999999888 9999999999988887
Q ss_pred HHHhCC
Q 037952 75 KLLNHG 80 (148)
Q Consensus 75 ~~~~~~ 80 (148)
.++...
T Consensus 409 s~K~~r 414 (939)
T KOG0049|consen 409 SAKVER 414 (939)
T ss_pred hhccCc
Confidence 665543
No 8
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.72 E-value=2.6e-08 Score=90.31 Aligned_cols=73 Identities=21% Similarity=0.316 Sum_probs=62.2
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHHHHHHHhhc----------------CchhHHH
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEEDKLIIKLHR----------------RTDNEIK 65 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd~~l~~l~~----------------Rt~~~ik 65 (148)
||.+||...|..+-..++| |+..|||+||.|.|.-..+++.||-.||+.||.++. ||..|..
T Consensus 374 AV~~Yg~kdw~k~R~~vPn--RSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~ 451 (939)
T KOG0049|consen 374 AVSRYGAKDWAKVRQAVPN--RSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLR 451 (939)
T ss_pred HHHHhCccchhhHHHhcCC--ccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccchHHHHHHHccccchhHHH
Confidence 7999999999999888888 999999999999999999999999999999999877 8886655
Q ss_pred HHHHHHHHHHH
Q 037952 66 NCWNTHIKRKL 76 (148)
Q Consensus 66 nrw~~~~~~~~ 76 (148)
.|=..++..++
T Consensus 452 rrR~R~~~~k~ 462 (939)
T KOG0049|consen 452 RRRLRLIAAKL 462 (939)
T ss_pred HHHHHHHHHHH
Confidence 54444444443
No 9
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=98.43 E-value=3.6e-07 Score=82.51 Aligned_cols=69 Identities=20% Similarity=0.293 Sum_probs=61.9
Q ss_pred hhhhhHHhhhccCCCCChhHHHHHhhhccCCC--CCCCCCCHHHHHHHHHhhc---------------------------
Q 037952 8 QLIYVHVSINYSGLLRCGKSCRSRWINYLHPH--LKCGNFTNEEDKLIIKLHR--------------------------- 58 (148)
Q Consensus 8 ~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~--i~~~~wt~eEd~~l~~l~~--------------------------- 58 (148)
.+.-|.-|++++| |.+..||+||.+|..++ ++++.||.||+++||++|.
T Consensus 402 ~g~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~ 479 (607)
T KOG0051|consen 402 HGNDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLK 479 (607)
T ss_pred hcccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCcccccc
Confidence 3457888899999 99999999999999999 6999999999999999883
Q ss_pred --------------CchhHHHHHHHHHHHHHHHh
Q 037952 59 --------------RTDNEIKNCWNTHIKRKLLN 78 (148)
Q Consensus 59 --------------Rt~~~iknrw~~~~~~~~~~ 78 (148)
|+-.+|+.+|+.++.+....
T Consensus 480 d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n 513 (607)
T KOG0051|consen 480 DDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFN 513 (607)
T ss_pred CCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhh
Confidence 99999999999988876654
No 10
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.32 E-value=6.4e-07 Score=55.31 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=26.2
Q ss_pred CCCCCHHHHHHHHHhhc-----------------CchhHHHHHHHHHH
Q 037952 42 CGNFTNEEDKLIIKLHR-----------------RTDNEIKNCWNTHI 72 (148)
Q Consensus 42 ~~~wt~eEd~~l~~l~~-----------------Rt~~~iknrw~~~~ 72 (148)
|++||+|||++|++++. ||..+|++||+.++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 68999999999999877 99999999998764
No 11
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.32 E-value=6e-07 Score=73.42 Aligned_cols=43 Identities=19% Similarity=0.389 Sum_probs=37.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhc-----------------CchhHHHHHHHHHHHHHHHh
Q 037952 36 LHPHLKCGNFTNEEDKLIIKLHR-----------------RTDNEIKNCWNTHIKRKLLN 78 (148)
Q Consensus 36 L~p~i~~~~wt~eEd~~l~~l~~-----------------Rt~~~iknrw~~~~~~~~~~ 78 (148)
-+++|++++||+|||++|++++. ||..||+.||..+|+..+.+
T Consensus 19 ~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~k 78 (249)
T PLN03212 19 TKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKR 78 (249)
T ss_pred ccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhccc
Confidence 35789999999999999999777 99999999999988765544
No 12
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.22 E-value=9.7e-07 Score=54.50 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=28.3
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhcc
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYL 36 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L 36 (148)
+|.++|..+|-.|+..+. .+||+.||+.||.+||
T Consensus 15 ~v~~~g~~~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 15 AVKKYGKDNWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp HHHHSTTTHHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred HHHHhCCcHHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 688999887777766666 3699999999999986
No 13
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.06 E-value=2e-06 Score=69.69 Aligned_cols=45 Identities=24% Similarity=0.415 Sum_probs=38.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhhc-----------------CchhHHHHHHHHHHHHHHHhCCC
Q 037952 37 HPHLKCGNFTNEEDKLIIKLHR-----------------RTDNEIKNCWNTHIKRKLLNHGL 81 (148)
Q Consensus 37 ~p~i~~~~wt~eEd~~l~~l~~-----------------Rt~~~iknrw~~~~~~~~~~~~~ 81 (148)
.|.+.+||||+|||++|++++. |+..+|+-||..+|+-.+.+..+
T Consensus 4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~f 65 (238)
T KOG0048|consen 4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNF 65 (238)
T ss_pred CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCC
Confidence 4566689999999999999888 99999999999999876654443
No 14
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.98 E-value=7.5e-06 Score=48.76 Aligned_cols=32 Identities=41% Similarity=0.770 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHhhc----------------CchhHHHHHHHHHHH
Q 037952 42 CGNFTNEEDKLIIKLHR----------------RTDNEIKNCWNTHIK 73 (148)
Q Consensus 42 ~~~wt~eEd~~l~~l~~----------------Rt~~~iknrw~~~~~ 73 (148)
+++||++||.+|+.++. ||..+|++||+.+++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 47899999999999766 999999999987653
No 15
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.89 E-value=5.6e-06 Score=52.93 Aligned_cols=29 Identities=38% Similarity=0.853 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHhhc---------------CchhHHHHHHHHHHH
Q 037952 45 FTNEEDKLIIKLHR---------------RTDNEIKNCWNTHIK 73 (148)
Q Consensus 45 wt~eEd~~l~~l~~---------------Rt~~~iknrw~~~~~ 73 (148)
||+|||++|+.++. ||..+|++||..+|+
T Consensus 1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCc
Confidence 99999999999887 999999999988554
No 16
>PLN03091 hypothetical protein; Provisional
Probab=97.86 E-value=8e-06 Score=71.60 Aligned_cols=40 Identities=20% Similarity=0.403 Sum_probs=35.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhhc-----------------CchhHHHHHHHHHHHHHH
Q 037952 37 HPHLKCGNFTNEEDKLIIKLHR-----------------RTDNEIKNCWNTHIKRKL 76 (148)
Q Consensus 37 ~p~i~~~~wt~eEd~~l~~l~~-----------------Rt~~~iknrw~~~~~~~~ 76 (148)
...|+++.||+|||++|+++|. |+..||+.||..+|+..+
T Consensus 9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~I 65 (459)
T PLN03091 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDL 65 (459)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcc
Confidence 4789999999999999999776 999999999997776544
No 17
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.62 E-value=7.1e-05 Score=43.83 Aligned_cols=28 Identities=29% Similarity=0.618 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHhhc----------------CchhHHHHHHHHH
Q 037952 44 NFTNEEDKLIIKLHR----------------RTDNEIKNCWNTH 71 (148)
Q Consensus 44 ~wt~eEd~~l~~l~~----------------Rt~~~iknrw~~~ 71 (148)
+||++||.+|++++. ||..+|++||+.+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 599999999999876 9999999999764
No 18
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.44 E-value=0.00014 Score=43.06 Aligned_cols=35 Identities=26% Similarity=0.424 Sum_probs=26.7
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCC
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHP 38 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p 38 (148)
++.++|...| ..||..++ +|++.+|+.||.+++.+
T Consensus 15 ~~~~~g~~~w-~~Ia~~~~-~rt~~~~~~~~~~~~~~ 49 (49)
T smart00717 15 LVKKYGKNNW-EKIAKELP-GRTAEQCRERWNNLLKP 49 (49)
T ss_pred HHHHHCcCCH-HHHHHHcC-CCCHHHHHHHHHHHcCC
Confidence 5677777555 55566666 79999999999998764
No 19
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.16 E-value=0.00043 Score=40.39 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=25.1
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhcc
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYL 36 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L 36 (148)
++.++|... |..||+.++ +|++.||+.||.+++
T Consensus 13 ~~~~~g~~~-w~~Ia~~~~-~rs~~~~~~~~~~~~ 45 (45)
T cd00167 13 AVKKYGKNN-WEKIAKELP-GRTPKQCRERWRNLL 45 (45)
T ss_pred HHHHHCcCC-HHHHHhHcC-CCCHHHHHHHHHHhC
Confidence 467777655 555666776 699999999998864
No 20
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=96.84 E-value=0.0028 Score=56.95 Aligned_cols=46 Identities=28% Similarity=0.460 Sum_probs=40.3
Q ss_pred hhHHhhhccCCCCChhHHHHHhhhccCC--CCCCCCCCHHHHHHHHHhhc
Q 037952 11 YVHVSINYSGLLRCGKSCRSRWINYLHP--HLKCGNFTNEEDKLIIKLHR 58 (148)
Q Consensus 11 ~~~~~~~~~g~~R~~kqCr~Rw~n~L~p--~i~~~~wt~eEd~~l~~l~~ 58 (148)
-|..|.+..| |-+..||+||.+|..+ .+++++|+.||+++|.+.+.
T Consensus 312 ~w~~ig~~~~--rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv~ 359 (512)
T COG5147 312 SWTEIGKLLG--RMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVVN 359 (512)
T ss_pred hhhHhhhhhc--cCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHHH
Confidence 4666666666 9999999999999999 68999999999999999874
No 21
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=96.58 E-value=0.0027 Score=49.09 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=32.3
Q ss_pred CCCCCCCHHHHHHHHHhhc---------------------CchhHHHHHHHHHHHHHHHh
Q 037952 40 LKCGNFTNEEDKLIIKLHR---------------------RTDNEIKNCWNTHIKRKLLN 78 (148)
Q Consensus 40 i~~~~wt~eEd~~l~~l~~---------------------Rt~~~iknrw~~~~~~~~~~ 78 (148)
.+.+.||.|||.+|-..|- ||+.+|.=|||..+|+++..
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~RTsAACGFRWNs~VRkqY~~ 61 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALNRTAAACGFRWNAYVRKQYEE 61 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHcccHHHhcchHHHHHHHHHHH
Confidence 3567899999998877433 99999999999999987643
No 22
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=95.26 E-value=0.029 Score=37.88 Aligned_cols=19 Identities=32% Similarity=0.664 Sum_probs=13.6
Q ss_pred CchhHHHHHHHHHHHHHHHh
Q 037952 59 RTDNEIKNCWNTHIKRKLLN 78 (148)
Q Consensus 59 Rt~~~iknrw~~~~~~~~~~ 78 (148)
||..||+++|.. |++++..
T Consensus 51 rt~~qc~~Kw~~-L~~~Yk~ 69 (90)
T PF13837_consen 51 RTPEQCRNKWKN-LKKKYKK 69 (90)
T ss_dssp --HHHHHHHHHH-HHHHHHC
T ss_pred CCHHHHHHHHHH-HHHHHHH
Confidence 999999999998 5555554
No 23
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=94.95 E-value=0.028 Score=37.18 Aligned_cols=34 Identities=18% Similarity=0.359 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHHhhc-------------------------CchhHHHHHHHHHHHHH
Q 037952 42 CGNFTNEEDKLIIKLHR-------------------------RTDNEIKNCWNTHIKRK 75 (148)
Q Consensus 42 ~~~wt~eEd~~l~~l~~-------------------------Rt~~~iknrw~~~~~~~ 75 (148)
+-+||.|||++|++.+. +|-...++||..+|+.+
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 45899999999999874 66778888886666554
No 24
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=94.83 E-value=0.035 Score=43.41 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=29.7
Q ss_pred CCCCCCCHHHHHHHHHhhc---------------------CchhHHHHHHHHHHHHHH
Q 037952 40 LKCGNFTNEEDKLIIKLHR---------------------RTDNEIKNCWNTHIKRKL 76 (148)
Q Consensus 40 i~~~~wt~eEd~~l~~l~~---------------------Rt~~~iknrw~~~~~~~~ 76 (148)
.+.+.||.|||.+|-..+- ||..+|.-|||..+|+++
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~rt~aac~fRwNs~vrk~Y 60 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALKRTAAACGFRWNSVVRKQY 60 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH
Confidence 4567899999999833221 999999999999999754
No 25
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=93.27 E-value=0.2 Score=33.19 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=15.0
Q ss_pred CCCCCHHHHHHHHHhhc
Q 037952 42 CGNFTNEEDKLIIKLHR 58 (148)
Q Consensus 42 ~~~wt~eEd~~l~~l~~ 58 (148)
+..||.+|.++|++++.
T Consensus 2 ~~~fs~~E~~~Lv~~v~ 18 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVE 18 (78)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 46899999999999876
No 26
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=93.21 E-value=0.065 Score=36.13 Aligned_cols=25 Identities=24% Similarity=0.703 Sum_probs=15.6
Q ss_pred hhhHHhhhcc--CCCCChhHHHHHhhh
Q 037952 10 IYVHVSINYS--GLLRCGKSCRSRWIN 34 (148)
Q Consensus 10 ~~~~~~~~~~--g~~R~~kqCr~Rw~n 34 (148)
.|-.|+..+. |..|++.||+.+|.+
T Consensus 36 ~w~~Ia~~l~~~G~~rt~~qc~~Kw~~ 62 (90)
T PF13837_consen 36 VWKEIAEELAEHGYNRTPEQCRNKWKN 62 (90)
T ss_dssp HHHHHHHHHHHHC----HHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4666655543 667999999999986
No 27
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=92.53 E-value=0.24 Score=36.45 Aligned_cols=37 Identities=32% Similarity=0.456 Sum_probs=28.8
Q ss_pred CCCCCCCCCHHHHHHHHHhhc-------------------------------CchhHHHHHHHHHHHH
Q 037952 38 PHLKCGNFTNEEDKLIIKLHR-------------------------------RTDNEIKNCWNTHIKR 74 (148)
Q Consensus 38 p~i~~~~wt~eEd~~l~~l~~-------------------------------Rt~~~iknrw~~~~~~ 74 (148)
|+-++..||++||..||.++. ||+..|..|.++||+-
T Consensus 45 ~~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 45 PNNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp STSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 366678999999999888655 9999999999998874
No 28
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=90.90 E-value=0.38 Score=44.20 Aligned_cols=58 Identities=24% Similarity=0.262 Sum_probs=43.8
Q ss_pred HHhhhccCCCCChhHHHH---HhhhccCCCCCCCCCCHHHHHHHHHhhc--------------CchhHHHHHHHHHHH
Q 037952 13 HVSINYSGLLRCGKSCRS---RWINYLHPHLKCGNFTNEEDKLIIKLHR--------------RTDNEIKNCWNTHIK 73 (148)
Q Consensus 13 ~~~~~~~g~~R~~kqCr~---Rw~n~L~p~i~~~~wt~eEd~~l~~l~~--------------Rt~~~iknrw~~~~~ 73 (148)
.-+.+++.. |+++..-. |=.+-|.+ .+|-||+||++.|-.||. |....|+-||...++
T Consensus 355 n~~~~~Lp~-R~~~siy~~~rR~y~~FE~--~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~lgr~P~~crd~wr~~~~ 429 (607)
T KOG0051|consen 355 NNLYKLLPY-RDRKSIYHHLRRAYTPFEN--KRGKWTPEEEEELKKLVVEHGNDWKEIGKALGRMPMDCRDRWRQYVK 429 (607)
T ss_pred HhhhhhcCc-ccchhHHHHHHhcCCcccc--ccCCCCcchHHHHHHHHHHhcccHHHHHHHHccCcHHHHHHHHHhhc
Confidence 334555553 88887654 44455777 999999999999999887 999999999965443
No 29
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=90.11 E-value=0.54 Score=31.96 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=12.4
Q ss_pred CchhHHHHHHHHHHHH
Q 037952 59 RTDNEIKNCWNTHIKR 74 (148)
Q Consensus 59 Rt~~~iknrw~~~~~~ 74 (148)
-|..+|+|||..+.++
T Consensus 49 ~t~~qlknk~~~lk~~ 64 (96)
T PF12776_consen 49 YTKKQLKNKWKTLKKD 64 (96)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 6788999999875543
No 30
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=87.99 E-value=1.2 Score=35.70 Aligned_cols=56 Identities=27% Similarity=0.489 Sum_probs=40.9
Q ss_pred CChhHHHHHhhhc----------------cCCCC-----CCCCCCHHHHHHHHHhhc-----------------------
Q 037952 23 RCGKSCRSRWINY----------------LHPHL-----KCGNFTNEEDKLIIKLHR----------------------- 58 (148)
Q Consensus 23 R~~kqCr~Rw~n~----------------L~p~i-----~~~~wt~eEd~~l~~l~~----------------------- 58 (148)
-|-+...+||..- |.|.+ .+-+||.+||++|.....
T Consensus 33 fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~s 112 (199)
T PF13325_consen 33 FTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPS 112 (199)
T ss_pred CcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccc
Confidence 4556677788654 44443 345999999999998543
Q ss_pred CchhHHHHHHHHHHHHHHHh
Q 037952 59 RTDNEIKNCWNTHIKRKLLN 78 (148)
Q Consensus 59 Rt~~~iknrw~~~~~~~~~~ 78 (148)
||...+.++|..+.+-.+..
T Consensus 113 RTak~L~~HW~lmkqy~LL~ 132 (199)
T PF13325_consen 113 RTAKSLQDHWRLMKQYHLLP 132 (199)
T ss_pred cCHHHHHHHHHHHHHhchhh
Confidence 99999999998655555554
No 31
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=84.59 E-value=0.62 Score=41.23 Aligned_cols=33 Identities=6% Similarity=0.230 Sum_probs=29.4
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhcc
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYL 36 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L 36 (148)
|+++||-+||-.| |..+| .|++.+|++-|.+++
T Consensus 86 a~~t~G~GNW~dI-A~hIG-tKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 86 AAETYGFGNWQDI-ADHIG-TKTKEECKEHYLKHF 118 (438)
T ss_pred HHHHhCCCcHHHH-HHHHc-ccchHHHHHHHHHHH
Confidence 7899999998887 78899 999999999999764
No 32
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=83.86 E-value=1.8 Score=36.50 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHHHhhc-----------------------------CchhHHHHHHHHHHHH
Q 037952 42 CGNFTNEEDKLIIKLHR-----------------------------RTDNEIKNCWNTHIKR 74 (148)
Q Consensus 42 ~~~wt~eEd~~l~~l~~-----------------------------Rt~~~iknrw~~~~~~ 74 (148)
...|+.+|=..||.+.. ||+.+||++|..+.++
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~ 115 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKK 115 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999666 9999999999995554
No 33
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=78.07 E-value=3.7 Score=36.47 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=28.8
Q ss_pred CCCCCCCCCCHHHHHHHHHhhc----------------CchhHHHHHHHH
Q 037952 37 HPHLKCGNFTNEEDKLIIKLHR----------------RTDNEIKNCWNT 70 (148)
Q Consensus 37 ~p~i~~~~wt~eEd~~l~~l~~----------------Rt~~~iknrw~~ 70 (148)
+-.|-...||++||-+||+++. ||..+||.+|..
T Consensus 67 s~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k 116 (438)
T KOG0457|consen 67 SFPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLK 116 (438)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHH
Confidence 3346677999999999999776 999999999964
No 34
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=77.25 E-value=2.7 Score=26.95 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=25.6
Q ss_pred HHHHHhhhhh---hHHhhhccCCCC-ChhHHHHHhhhcc
Q 037952 2 TIHKAAQLIY---VHVSINYSGLLR-CGKSCRSRWINYL 36 (148)
Q Consensus 2 ~i~k~~~~~~---~~~~~~~~g~~R-~~kqCr~Rw~n~L 36 (148)
||+.||-.+| -.| ++.++..| |..||+.....|.
T Consensus 17 ai~~~G~g~~a~pk~I-~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 17 AVQKLGGPDWATPKRI-LELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred HHHHhCCCcccchHHH-HHHcCCCCCCHHHHHHHHHHHH
Confidence 7889998776 555 45555466 9999999988774
No 35
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=75.50 E-value=5.5 Score=25.48 Aligned_cols=17 Identities=6% Similarity=0.032 Sum_probs=14.1
Q ss_pred CCCCCHHHHHHHHHhhc
Q 037952 42 CGNFTNEEDKLIIKLHR 58 (148)
Q Consensus 42 ~~~wt~eEd~~l~~l~~ 58 (148)
+-.||+||....|+.+.
T Consensus 3 r~~WT~eeh~~Fl~ai~ 19 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQ 19 (57)
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 45799999998888765
No 36
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=73.14 E-value=4 Score=39.98 Aligned_cols=48 Identities=23% Similarity=0.409 Sum_probs=36.6
Q ss_pred hHHHHHh----hhccCCCCCCCCCCHHHHHHHHHhhc----------------------------CchhHHHHHHHHHHH
Q 037952 26 KSCRSRW----INYLHPHLKCGNFTNEEDKLIIKLHR----------------------------RTDNEIKNCWNTHIK 73 (148)
Q Consensus 26 kqCr~Rw----~n~L~p~i~~~~wt~eEd~~l~~l~~----------------------------Rt~~~iknrw~~~~~ 73 (148)
.+|+.-| .+| +.-++..||.|||..||.++. ||...|+.|++++|+
T Consensus 908 ~~~~~p~~~l~~~~--~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~ 985 (1033)
T PLN03142 908 DRYKNPWLELKIQY--GQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR 985 (1033)
T ss_pred HHccCcHHHceeec--CCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence 3466666 444 455566899999999987544 999999999998887
Q ss_pred HH
Q 037952 74 RK 75 (148)
Q Consensus 74 ~~ 75 (148)
--
T Consensus 986 ~~ 987 (1033)
T PLN03142 986 LI 987 (1033)
T ss_pred HH
Confidence 53
No 37
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=71.33 E-value=1.8 Score=39.47 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=20.2
Q ss_pred hhHHhhhccCCCCChhHHHHHhhhcc
Q 037952 11 YVHVSINYSGLLRCGKSCRSRWINYL 36 (148)
Q Consensus 11 ~~~~~~~~~g~~R~~kqCr~Rw~n~L 36 (148)
-|.-|+.++| |++.||-+||.+-|
T Consensus 80 qwrtIa~i~g--r~~~qc~eRy~~ll 103 (617)
T KOG0050|consen 80 QWRTIADIMG--RTSQQCLERYNNLL 103 (617)
T ss_pred ccchHHHHhh--hhHHHHHHHHHHHH
Confidence 4667788999 99999999998744
No 38
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=70.08 E-value=2.9 Score=35.29 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=19.8
Q ss_pred hhhhHHhhhccCC--CCChhHHHHHhhhcc
Q 037952 9 LIYVHVSINYSGL--LRCGKSCRSRWINYL 36 (148)
Q Consensus 9 ~~~~~~~~~~~g~--~R~~kqCr~Rw~n~L 36 (148)
.-|-.++.++..+ -|+++||+.+|.|-.
T Consensus 84 ~~We~va~k~~~~g~~rs~~qck~K~~nl~ 113 (345)
T KOG4282|consen 84 PLWEEVARKMAELGYPRSPKQCKAKIENLK 113 (345)
T ss_pred cHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3466665545543 599999999998753
No 39
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=69.35 E-value=10 Score=33.52 Aligned_cols=46 Identities=17% Similarity=0.341 Sum_probs=37.0
Q ss_pred HHHhhhccCCCCCCCCCCHHHHHHHHHhhc---------------------CchhHHHHHHHHHHHHHHHh
Q 037952 29 RSRWINYLHPHLKCGNFTNEEDKLIIKLHR---------------------RTDNEIKNCWNTHIKRKLLN 78 (148)
Q Consensus 29 r~Rw~n~L~p~i~~~~wt~eEd~~l~~l~~---------------------Rt~~~iknrw~~~~~~~~~~ 78 (148)
-+-|.+||+- ..||.+|=+-|++|.. ||-..+|.||+...++-+..
T Consensus 121 ~eEYe~~l~d----n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kA 187 (445)
T KOG2656|consen 121 DEEYEAHLND----NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKA 187 (445)
T ss_pred hHHHHHhhcc----ccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHc
Confidence 4567777765 7899999999999866 89999999999866665543
No 40
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=67.93 E-value=4.2 Score=27.84 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=10.7
Q ss_pred CCCCCCCCCHHHHHHHHH
Q 037952 38 PHLKCGNFTNEEDKLIIK 55 (148)
Q Consensus 38 p~i~~~~wt~eEd~~l~~ 55 (148)
|.--.|-||+|+|+.|..
T Consensus 43 P~n~~GiWT~eDD~~L~~ 60 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLRS 60 (87)
T ss_dssp -TT-TT---HHHHHHHTS
T ss_pred CCCCCCCcCHHHHHHHHc
Confidence 666688999999999954
No 41
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=67.35 E-value=6.6 Score=31.45 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHhhc-----------------CchhHHHHHHHHHHH
Q 037952 44 NFTNEEDKLIIKLHR-----------------RTDNEIKNCWNTHIK 73 (148)
Q Consensus 44 ~wt~eEd~~l~~l~~-----------------Rt~~~iknrw~~~~~ 73 (148)
.|++++|-+|+..+. -|-.+|..||+.+|=
T Consensus 1 rW~~~DDl~Li~av~~~~~L~~v~~gvkFS~~fT~~Ei~~RW~~lly 47 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTNDLESVHLGVKFSCKFTLQEIEERWYALLY 47 (199)
T ss_pred CCCchhhHHHHHHHHHhcCHHHHHccCCcCCcCcHHHHHHHHHHHHc
Confidence 499999999999766 788999999998764
No 42
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=64.38 E-value=3.3 Score=32.16 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=19.9
Q ss_pred hHHhhhccCCCCChhHHHHHhhhccC
Q 037952 12 VHVSINYSGLLRCGKSCRSRWINYLH 37 (148)
Q Consensus 12 ~~~~~~~~g~~R~~kqCr~Rw~n~L~ 37 (148)
..-|++.++ ||+--|.-||..|++
T Consensus 33 FeEvg~~L~--RTsAACGFRWNs~VR 56 (161)
T TIGR02894 33 FEEVGRALN--RTAAACGFRWNAYVR 56 (161)
T ss_pred HHHHHHHHc--ccHHHhcchHHHHHH
Confidence 344666777 999999999999987
No 43
>smart00595 MADF subfamily of SANT domain.
Probab=61.44 E-value=6.4 Score=26.24 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=16.1
Q ss_pred hhHHhhhccCCCCChhHHHHHhhh
Q 037952 11 YVHVSINYSGLLRCGKSCRSRWIN 34 (148)
Q Consensus 11 ~~~~~~~~~g~~R~~kqCr~Rw~n 34 (148)
-|..||..+| -++.+|+.+|.+
T Consensus 29 aW~~Ia~~l~--~~~~~~~~kw~~ 50 (89)
T smart00595 29 AWEEIAEELG--LSVEECKKRWKN 50 (89)
T ss_pred HHHHHHHHHC--cCHHHHHHHHHH
Confidence 5666777778 488888888854
No 44
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=54.21 E-value=7.1 Score=30.56 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=17.5
Q ss_pred hHHhhhccCCCCChhHHHHHhhhccC
Q 037952 12 VHVSINYSGLLRCGKSCRSRWINYLH 37 (148)
Q Consensus 12 ~~~~~~~~g~~R~~kqCr~Rw~n~L~ 37 (148)
...++..++ |+.-+|..||..+|+
T Consensus 34 fe~~g~~L~--rt~aac~fRwNs~vr 57 (170)
T PRK13923 34 FEEVGDALK--RTAAACGFRWNSVVR 57 (170)
T ss_pred HHHHHHHHh--hhHHHHHhHHHHHHH
Confidence 344556666 999999999965554
No 45
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=44.94 E-value=17 Score=23.46 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=7.2
Q ss_pred hhhccCCCCChhHHHHHh
Q 037952 15 SINYSGLLRCGKSCRSRW 32 (148)
Q Consensus 15 ~~~~~g~~R~~kqCr~Rw 32 (148)
||..+|-.-++.+|+.||
T Consensus 32 Ia~~l~~~~~~~~~~~~w 49 (85)
T PF10545_consen 32 IARELGKEFSVDDCKKRW 49 (85)
T ss_pred HHHHHccchhHHHHHHHH
Confidence 333444223344444444
No 46
>COG2992 Bax Uncharacterized FlgJ-related protein [General function prediction only]
Probab=41.08 E-value=14 Score=30.49 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=28.4
Q ss_pred CCCCCCCHHHHHHHHHhhc-----CchhHHHHHHHHHHHH
Q 037952 40 LKCGNFTNEEDKLIIKLHR-----RTDNEIKNCWNTHIKR 74 (148)
Q Consensus 40 i~~~~wt~eEd~~l~~l~~-----Rt~~~iknrw~~~~~~ 74 (148)
+.++.||++|-..|-+|.- ++.|.+++.|+.++.|
T Consensus 93 ~~k~~~s~~e~a~l~~lat~ykv~~~eN~~~~~wnel~~R 132 (262)
T COG2992 93 YQKEQLSPSERARLKDLATRYKVKWSENTRKIPWNELLHR 132 (262)
T ss_pred hhhccCCHHHHHHHHHHHHHHHhhhccccccccHHHHHHH
Confidence 4567899999888777655 9999999999977666
No 47
>PF09019 EcoRII-C: EcoRII C terminal; InterPro: IPR015109 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry represents the C-terminal catalytic domain of the type II restriction endonuclease EcoRII, which has a restriction endonuclease-like fold with a central five-stranded mixed beta-sheet surrounded on both sides by alpha-helices. EcoRII cleaves DNA specifically at single 5' CCWGG sites []. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system; PDB: 3HQG_A 1NA6_A 2GB7_C 2FQZ_A 3BM3_B.
Probab=40.26 E-value=6.6 Score=30.55 Aligned_cols=11 Identities=27% Similarity=0.709 Sum_probs=8.2
Q ss_pred hHHHHHhhhcc
Q 037952 26 KSCRSRWINYL 36 (148)
Q Consensus 26 kqCr~Rw~n~L 36 (148)
.-||+||...|
T Consensus 96 TTlkdRWrQVl 106 (164)
T PF09019_consen 96 TTLKDRWRQVL 106 (164)
T ss_dssp SS-TTGCGHHH
T ss_pred ccHHHHHHHHH
Confidence 35999999887
No 48
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=39.75 E-value=23 Score=23.17 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=19.5
Q ss_pred hhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCC
Q 037952 7 AQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLK 41 (148)
Q Consensus 7 ~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~ 41 (148)
|..+|-....+.+. .++-.+-|+||..+|.+...
T Consensus 29 Gn~iwk~le~~~~t-~HtwQSwR~Ry~K~L~~~~~ 62 (65)
T PF08914_consen 29 GNKIWKELEEKHPT-RHTWQSWRDRYLKHLRGRPR 62 (65)
T ss_dssp SSHHHHHHHHS-SS-S--SHHHHHHHHHHT-----
T ss_pred hHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcccc
Confidence 44556666665552 59999999999999988654
No 49
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=38.42 E-value=83 Score=18.44 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=18.9
Q ss_pred CHHHHHHHHHhhcCchhHHHHHHHH
Q 037952 46 TNEEDKLIIKLHRRTDNEIKNCWNT 70 (148)
Q Consensus 46 t~eEd~~l~~l~~Rt~~~iknrw~~ 70 (148)
|++|-+.|.+..+-|-.||.|.|..
T Consensus 12 s~~ek~~L~~~tgls~~Qi~~WF~N 36 (40)
T PF05920_consen 12 SKEEKEELAKQTGLSRKQISNWFIN 36 (40)
T ss_dssp -HHHHHHHHHHHTS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5677788888888999999998754
No 50
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=38.28 E-value=17 Score=31.60 Aligned_cols=34 Identities=12% Similarity=0.283 Sum_probs=28.1
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccC
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLH 37 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~ 37 (148)
+...+|.++|-.| |..+| .|.+..|++.|..++.
T Consensus 77 ~~~TlGlGNW~dI-adyiG-sr~kee~k~HylK~y~ 110 (432)
T COG5114 77 CLDTLGLGNWEDI-ADYIG-SRAKEEIKSHYLKMYD 110 (432)
T ss_pred HHHhcCCCcHHHH-HHHHh-hhhhHHHHHHHHHHHh
Confidence 3456788888776 77888 8999999999998875
No 51
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=31.69 E-value=39 Score=22.66 Aligned_cols=31 Identities=16% Similarity=0.175 Sum_probs=21.8
Q ss_pred hhhhhHHhhhccCCCCC----hhHHHHHhhhccCC
Q 037952 8 QLIYVHVSINYSGLLRC----GKSCRSRWINYLHP 38 (148)
Q Consensus 8 ~~~~~~~~~~~~g~~R~----~kqCr~Rw~n~L~p 38 (148)
....|..|+..+|+... +.+.+.-|..||.|
T Consensus 56 ~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~~ 90 (92)
T PF01388_consen 56 KNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLLP 90 (92)
T ss_dssp HHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTHH
T ss_pred ccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhHh
Confidence 34568889999997542 46678888888754
No 52
>PF07325 Curto_V2: Curtovirus V2 protein; InterPro: IPR009931 This family consists of several Curtovirus V2 proteins. The exact function of V2 is unclear but it is known that the protein is required for a successful host infection process [].
Probab=29.31 E-value=1.1e+02 Score=22.46 Aligned_cols=31 Identities=26% Similarity=0.624 Sum_probs=25.4
Q ss_pred hhHHHHHhhhc----cCCCCCCCCCCHHHHHHHHHhh
Q 037952 25 GKSCRSRWINY----LHPHLKCGNFTNEEDKLIIKLH 57 (148)
Q Consensus 25 ~kqCr~Rw~n~----L~p~i~~~~wt~eEd~~l~~l~ 57 (148)
.-+|-.||... +.|.| .+-|-||.+..|+.+
T Consensus 20 sTSCflrYNkwCilGi~~ei--e~LtlEeGE~FLqFQ 54 (126)
T PF07325_consen 20 STSCFLRYNKWCILGIHPEI--EPLTLEEGEVFLQFQ 54 (126)
T ss_pred HhHHHHhhchhheecccccc--cccchhhhHHHHHHH
Confidence 45799999876 45555 799999999999987
No 53
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=26.83 E-value=1.3e+02 Score=21.03 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=12.6
Q ss_pred CCCCHHHHHHHHHhhc
Q 037952 43 GNFTNEEDKLIIKLHR 58 (148)
Q Consensus 43 ~~wt~eEd~~l~~l~~ 58 (148)
.-||+|+|-.||+...
T Consensus 5 R~WS~eDEi~iL~gl~ 20 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLI 20 (98)
T ss_pred CCCCchHHHHHHHHHH
Confidence 3599999999998443
No 54
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=24.66 E-value=78 Score=28.88 Aligned_cols=30 Identities=13% Similarity=0.188 Sum_probs=24.5
Q ss_pred CCCCCCHHHHHHHHHhhc---------------CchhHHHHHHHH
Q 037952 41 KCGNFTNEEDKLIIKLHR---------------RTDNEIKNCWNT 70 (148)
Q Consensus 41 ~~~~wt~eEd~~l~~l~~---------------Rt~~~iknrw~~ 70 (148)
.++.||.+|..+||..+. ||--+|=-+|-.
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~ 296 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLR 296 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHh
Confidence 467999999999999766 888888877743
No 55
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=23.04 E-value=64 Score=29.36 Aligned_cols=29 Identities=10% Similarity=0.101 Sum_probs=23.8
Q ss_pred HHHHhhhhhhHHhhhccCCCCChhHHHHHhhh
Q 037952 3 IHKAAQLIYVHVSINYSGLLRCGKSCRSRWIN 34 (148)
Q Consensus 3 i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n 34 (148)
|+.|| .-|..||..+| +|+..||-.+..+
T Consensus 294 Ie~yg--DdW~kVA~HVg-tKt~EqCIl~FL~ 322 (531)
T COG5259 294 IEMYG--DDWDKVARHVG-TKTKEQCILHFLQ 322 (531)
T ss_pred HHHhh--hhHHHHHHHhC-CCCHHHHHHHHHc
Confidence 44454 46888899999 9999999999974
No 56
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.76 E-value=69 Score=25.66 Aligned_cols=33 Identities=27% Similarity=0.443 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhCC
Q 037952 45 FTNEEDKLIIKLHRRTDNEIKNCWNTHIKRKLLNHG 80 (148)
Q Consensus 45 wt~eEd~~l~~l~~Rt~~~iknrw~~~~~~~~~~~~ 80 (148)
-|+||+.+++.-..+ .=+.+|..+..|++.+.+
T Consensus 21 It~EEe~~~lshIe~---ap~pkW~~L~NRRLqNyG 53 (224)
T KOG3200|consen 21 ITEEEENLYLSHIEN---APQPKWRVLANRRLQNYG 53 (224)
T ss_pred cChHHHHHHHHHHhc---CCCchhHHHHhhhhhhcC
Confidence 477777777776543 446799999999998755
No 57
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=21.06 E-value=1.3e+02 Score=26.36 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=25.8
Q ss_pred CCCCCCCHHHHHHHHHhhc----------------CchhHHHHHHHH
Q 037952 40 LKCGNFTNEEDKLIIKLHR----------------RTDNEIKNCWNT 70 (148)
Q Consensus 40 i~~~~wt~eEd~~l~~l~~----------------Rt~~~iknrw~~ 70 (148)
|--..|+.+||-+|++... |+..+||.+|..
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK 107 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLK 107 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHH
Confidence 4456899999999998554 999999999853
Done!