Query 037952
Match_columns 148
No_of_seqs 149 out of 1249
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 09:54:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9n_A MYB24; R2R3 domain, DNA 99.9 5.9E-24 2E-28 151.7 8.1 75 2-78 15-104 (107)
2 1gv2_A C-MYB, MYB proto-oncoge 99.9 1.5E-23 5.1E-28 148.6 7.1 73 2-76 18-105 (105)
3 3zqc_A MYB3; transcription-DNA 99.9 1.9E-23 6.6E-28 153.8 6.2 76 2-79 16-106 (131)
4 3osg_A MYB21; transcription-DN 99.9 1.4E-22 4.7E-27 148.4 8.3 71 2-75 25-110 (126)
5 1h8a_C AMV V-MYB, MYB transfor 99.9 1.5E-22 5.2E-27 148.2 5.3 73 2-76 41-128 (128)
6 1h89_C C-MYB, MYB proto-oncoge 99.8 3.7E-21 1.3E-25 145.4 5.3 73 2-76 72-159 (159)
7 1h89_C C-MYB, MYB proto-oncoge 99.8 9.3E-20 3.2E-24 137.7 4.9 70 2-73 20-105 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.7 2.6E-18 9E-23 125.6 4.1 57 16-73 2-74 (128)
9 2dim_A Cell division cycle 5-l 99.6 5.1E-17 1.8E-21 107.7 1.9 47 2-50 23-69 (70)
10 2llk_A Cyclin-D-binding MYB-li 99.5 2.6E-15 9.1E-20 100.9 3.0 42 30-71 11-66 (73)
11 2din_A Cell division cycle 5-l 99.4 2.8E-13 9.5E-18 88.6 6.5 47 34-80 1-61 (66)
12 2cu7_A KIAA1915 protein; nucle 99.3 2E-12 6.8E-17 86.0 5.8 48 36-84 3-65 (72)
13 1ign_A Protein (RAP1); RAP1,ye 99.1 8.3E-11 2.9E-15 94.5 7.1 53 2-55 22-107 (246)
14 1ity_A TRF1; helix-turn-helix, 99.1 2.1E-11 7.2E-16 80.3 2.7 44 2-46 24-68 (69)
15 2juh_A Telomere binding protei 99.1 1.1E-10 3.8E-15 85.2 6.3 63 2-69 31-102 (121)
16 1gvd_A MYB proto-oncogene prot 99.1 4.3E-11 1.5E-15 74.5 3.3 36 2-39 17-52 (52)
17 2roh_A RTBP1, telomere binding 99.1 7.7E-11 2.6E-15 86.1 4.8 56 2-58 45-109 (122)
18 2d9a_A B-MYB, MYB-related prot 99.1 6.6E-11 2.2E-15 75.7 3.3 38 2-41 22-59 (60)
19 2d9a_A B-MYB, MYB-related prot 99.1 7.8E-11 2.7E-15 75.4 3.4 38 37-74 3-56 (60)
20 1guu_A C-MYB, MYB proto-oncoge 99.0 1.3E-10 4.3E-15 72.3 2.6 36 2-39 17-52 (52)
21 2ltp_A Nuclear receptor corepr 98.5 4.8E-11 1.7E-15 82.5 0.0 44 34-77 8-66 (89)
22 1ity_A TRF1; helix-turn-helix, 99.0 5.1E-10 1.8E-14 73.5 4.4 45 34-78 2-64 (69)
23 1guu_A C-MYB, MYB proto-oncoge 99.0 4.9E-10 1.7E-14 69.6 3.8 34 40-73 1-50 (52)
24 1x41_A Transcriptional adaptor 98.9 7.8E-10 2.7E-14 70.9 4.6 37 37-73 3-55 (60)
25 1gvd_A MYB proto-oncogene prot 98.9 4.5E-10 1.5E-14 69.8 3.2 34 40-73 1-50 (52)
26 3sjm_A Telomeric repeat-bindin 98.9 3E-10 1E-14 74.1 2.5 40 2-41 25-64 (64)
27 2dim_A Cell division cycle 5-l 98.9 4E-10 1.4E-14 74.1 2.4 41 37-77 4-60 (70)
28 2yum_A ZZZ3 protein, zinc fing 98.9 1.8E-09 6.1E-14 71.8 5.2 42 37-78 3-65 (75)
29 1w0t_A Telomeric repeat bindin 98.9 1.1E-09 3.7E-14 68.4 3.8 34 41-74 1-52 (53)
30 3sjm_A Telomeric repeat-bindin 98.8 5E-09 1.7E-13 68.3 4.6 36 40-75 9-62 (64)
31 2ckx_A NGTRF1, telomere bindin 98.8 5.4E-09 1.8E-13 71.5 4.4 55 2-58 14-78 (83)
32 2din_A Cell division cycle 5-l 98.8 5.5E-10 1.9E-14 72.7 -0.7 39 2-44 23-61 (66)
33 1x41_A Transcriptional adaptor 98.8 3.7E-09 1.3E-13 67.7 2.9 37 2-40 22-58 (60)
34 2yum_A ZZZ3 protein, zinc fing 98.7 5.3E-09 1.8E-13 69.5 2.2 43 2-45 22-68 (75)
35 2elk_A SPCC24B10.08C protein; 98.6 3.1E-08 1.1E-12 63.0 4.8 36 36-71 3-55 (58)
36 1w0t_A Telomeric repeat bindin 98.6 1.6E-08 5.4E-13 63.0 2.6 35 2-37 16-51 (53)
37 2elk_A SPCC24B10.08C protein; 98.6 1.8E-08 6.3E-13 64.1 2.7 34 2-36 23-56 (58)
38 1ign_A Protein (RAP1); RAP1,ye 98.6 1.6E-08 5.6E-13 81.2 2.7 40 38-77 4-64 (246)
39 3hm5_A DNA methyltransferase 1 98.6 6.2E-08 2.1E-12 67.6 5.2 50 26-79 18-87 (93)
40 2juh_A Telomere binding protei 98.6 8E-08 2.7E-12 70.0 5.3 42 36-77 11-72 (121)
41 2cqr_A RSGI RUH-043, DNAJ homo 98.5 9.1E-08 3.1E-12 63.9 4.4 37 37-73 13-68 (73)
42 2aje_A Telomere repeat-binding 98.5 1.7E-07 5.9E-12 66.7 4.8 39 37-75 8-66 (105)
43 2cu7_A KIAA1915 protein; nucle 98.4 3.9E-08 1.3E-12 65.0 0.7 38 2-42 23-60 (72)
44 1gv2_A C-MYB, MYB proto-oncoge 98.4 2.2E-07 7.6E-12 64.9 3.8 34 39-72 1-50 (105)
45 2ckx_A NGTRF1, telomere bindin 98.4 4.4E-07 1.5E-11 61.9 4.7 35 43-77 1-55 (83)
46 1x58_A Hypothetical protein 49 98.3 3.1E-07 1.1E-11 59.6 3.6 34 41-74 7-58 (62)
47 2roh_A RTBP1, telomere binding 98.3 9.4E-07 3.2E-11 64.4 5.5 40 37-76 26-85 (122)
48 2aje_A Telomere repeat-binding 98.3 5E-07 1.7E-11 64.3 3.8 56 2-57 27-90 (105)
49 3osg_A MYB21; transcription-DN 98.3 8E-07 2.7E-11 64.3 4.5 38 36-73 5-57 (126)
50 3zqc_A MYB3; transcription-DNA 98.2 3.4E-07 1.2E-11 66.7 2.2 44 2-48 68-111 (131)
51 2yus_A SWI/SNF-related matrix- 98.2 4.4E-07 1.5E-11 61.3 2.0 31 2-35 32-62 (79)
52 2cjj_A Radialis; plant develop 98.2 2.5E-06 8.6E-11 59.3 5.3 35 41-75 7-60 (93)
53 2yus_A SWI/SNF-related matrix- 98.2 1.8E-06 6.1E-11 58.3 4.3 32 39-70 15-61 (79)
54 2k9n_A MYB24; R2R3 domain, DNA 98.0 3E-06 1E-10 59.5 3.8 32 42-73 1-48 (107)
55 2cqr_A RSGI RUH-043, DNAJ homo 98.0 3.8E-06 1.3E-10 56.0 2.7 35 2-37 32-68 (73)
56 2ltp_A Nuclear receptor corepr 97.2 1.1E-06 3.9E-11 60.3 0.0 34 2-38 30-63 (89)
57 2llk_A Cyclin-D-binding MYB-li 97.9 7.6E-06 2.6E-10 54.5 3.2 37 2-43 37-73 (73)
58 2cqq_A RSGI RUH-037, DNAJ homo 97.7 3.3E-05 1.1E-09 51.2 4.5 37 38-74 4-58 (72)
59 2cjj_A Radialis; plant develop 97.6 2E-05 7E-10 54.7 2.3 34 2-36 22-57 (93)
60 1ug2_A 2610100B20RIK gene prod 97.3 0.00025 8.5E-09 49.1 4.0 31 44-74 35-83 (95)
61 2eqr_A N-COR1, N-COR, nuclear 97.0 0.00044 1.5E-08 43.9 3.0 32 41-72 11-57 (61)
62 2lr8_A CAsp8-associated protei 95.9 0.00015 5.3E-09 47.6 0.0 30 44-73 16-62 (70)
63 4iej_A DNA methyltransferase 1 96.7 0.0035 1.2E-07 43.5 5.6 46 29-78 21-86 (93)
64 2iw5_B Protein corest, REST co 96.7 0.00086 2.9E-08 53.5 2.9 33 42-74 133-180 (235)
65 1fex_A TRF2-interacting telome 96.6 0.0017 5.8E-08 41.2 3.3 17 42-58 2-18 (59)
66 2eqr_A N-COR1, N-COR, nuclear 95.9 0.0047 1.6E-07 39.1 2.7 32 2-36 26-57 (61)
67 1wgx_A KIAA1903 protein; MYB D 95.8 0.0065 2.2E-07 40.3 3.1 30 42-71 8-56 (73)
68 2ebi_A DNA binding protein GT- 95.8 0.014 4.6E-07 39.0 4.7 33 42-74 4-65 (86)
69 1fex_A TRF2-interacting telome 95.8 0.0059 2E-07 38.6 2.7 30 7-37 29-58 (59)
70 1wgx_A KIAA1903 protein; MYB D 95.6 0.0064 2.2E-07 40.3 2.5 36 2-38 22-59 (73)
71 2cqq_A RSGI RUH-037, DNAJ homo 95.5 0.0061 2.1E-07 40.1 1.9 34 2-37 22-57 (72)
72 2iw5_B Protein corest, REST co 95.3 0.0088 3E-07 47.6 2.7 33 2-37 147-179 (235)
73 2ebi_A DNA binding protein GT- 93.4 0.028 9.7E-07 37.4 1.6 26 10-35 35-62 (86)
74 1ofc_X ISWI protein; nuclear p 87.0 0.69 2.3E-05 38.1 4.5 34 41-74 211-275 (304)
75 2yqk_A Arginine-glutamic acid 86.9 1.2 4E-05 28.0 4.7 34 37-70 4-53 (63)
76 1x58_A Hypothetical protein 49 85.7 0.48 1.6E-05 30.3 2.3 34 2-37 22-57 (62)
77 4eef_G F-HB80.4, designed hema 85.2 0.34 1.2E-05 32.0 1.5 28 42-69 20-66 (74)
78 2xag_B REST corepressor 1; ami 83.9 0.57 1.9E-05 40.9 2.7 31 2-35 394-424 (482)
79 2y9y_A Imitation switch protei 81.8 1.5 5.3E-05 37.0 4.5 36 41-76 227-293 (374)
80 4eef_G F-HB80.4, designed hema 81.4 0.47 1.6E-05 31.3 1.0 22 11-33 45-66 (74)
81 2xag_B REST corepressor 1; ami 75.3 1.8 6.1E-05 37.7 3.1 31 42-72 380-425 (482)
82 2yqk_A Arginine-glutamic acid 59.7 5.9 0.0002 24.6 2.4 29 2-33 23-52 (63)
83 4a69_C Nuclear receptor corepr 56.9 12 0.00042 25.1 3.8 29 42-70 43-86 (94)
84 2p1m_A SKP1-like protein 1A; F 56.0 17 0.00057 26.3 4.7 34 14-55 120-153 (160)
85 4b4c_A Chromodomain-helicase-D 52.5 16 0.00055 27.3 4.2 16 43-58 135-150 (211)
86 2crg_A Metastasis associated p 50.7 9.8 0.00034 24.1 2.3 29 2-33 22-51 (70)
87 3s1b_A Mini-Z; VEGF, cystine k 47.5 9 0.00031 20.9 1.5 17 25-41 2-19 (34)
88 3v7d_A Suppressor of kinetocho 42.1 29 0.001 25.4 4.1 35 13-55 127-161 (169)
89 2ast_A S-phase kinase-associat 36.4 32 0.0011 24.6 3.5 33 15-55 122-154 (159)
90 2yfv_C SCM3, KLLA0F05115P; cel 35.2 28 0.00097 21.9 2.6 26 50-75 20-45 (63)
91 1ig6_A MRF-2, modulator recogn 32.1 40 0.0014 22.7 3.2 34 5-38 50-87 (107)
92 2li6_A SWI/SNF chromatin-remod 31.1 25 0.00084 24.2 2.0 32 6-38 67-98 (116)
93 3h8k_B Autocrine motility fact 29.8 31 0.0011 18.3 1.8 18 45-64 1-18 (28)
94 3cz6_A DNA-binding protein RAP 29.6 29 0.00099 26.0 2.3 50 27-76 98-157 (168)
95 1c20_A DEAD ringer protein; DN 24.6 41 0.0014 23.4 2.2 32 7-38 71-106 (128)
96 3bm3_A PSPGI restriction endon 23.4 10 0.00034 30.5 -1.3 12 26-37 161-172 (272)
97 2gb7_A R.ECL18KI; ECL18KI-DNA 23.2 11 0.00038 30.9 -1.2 11 26-36 183-193 (305)
98 2jrz_A Histone demethylase jar 22.8 49 0.0017 22.7 2.3 32 7-38 59-93 (117)
99 2kk0_A AT-rich interactive dom 21.8 62 0.0021 23.1 2.8 45 6-50 82-132 (145)
100 2cxy_A BAF250B subunit, HBAF25 21.3 48 0.0016 23.0 2.0 17 7-23 70-86 (125)
101 1na6_A Ecorii, restriction end 21.2 14 0.00046 31.5 -1.0 12 27-38 326-337 (404)
102 2lm1_A Lysine-specific demethy 21.1 48 0.0016 22.2 1.9 32 7-38 63-97 (107)
No 1
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.90 E-value=5.9e-24 Score=151.66 Aligned_cols=75 Identities=25% Similarity=0.503 Sum_probs=65.4
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHHHHHHHhhc---------------CchhHHHH
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEEDKLIIKLHR---------------RTDNEIKN 66 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd~~l~~l~~---------------Rt~~~ikn 66 (148)
+|.+||..+|-.| |..++ +|+++|||+||.+||+|+|++|+||+|||++|+++|. ||+++|||
T Consensus 15 ~v~~~g~~~W~~I-a~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~ 92 (107)
T 2k9n_A 15 LVMRYGAKDWIRI-SQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRN 92 (107)
T ss_dssp HHHHHCSSCHHHH-HHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHH
T ss_pred HHHHHCCCCHHHH-hhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHH
Confidence 5778887666555 55565 6999999999999999999999999999999999886 99999999
Q ss_pred HHHHHHHHHHHh
Q 037952 67 CWNTHIKRKLLN 78 (148)
Q Consensus 67 rw~~~~~~~~~~ 78 (148)
||+.++++....
T Consensus 93 rw~~l~r~~~~~ 104 (107)
T 2k9n_A 93 RWMMIARHRAKH 104 (107)
T ss_dssp HHHHHHHHHHSS
T ss_pred HHHHHHhhHHHh
Confidence 999998886544
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.89 E-value=1.5e-23 Score=148.60 Aligned_cols=73 Identities=40% Similarity=0.703 Sum_probs=62.4
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHHHHHHHhhc---------------CchhHHHH
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEEDKLIIKLHR---------------RTDNEIKN 66 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd~~l~~l~~---------------Rt~~~ikn 66 (148)
+|++||..+|-.| |+.++ +|+++||++||.+||+|+|++++||+|||++|++++. ||+++|||
T Consensus 18 ~v~~~g~~~W~~I-a~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~ 95 (105)
T 1gv2_A 18 LVQKYGPKRWSVI-AKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKN 95 (105)
T ss_dssp HHHHHCTTCHHHH-HTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHH
T ss_pred HHHHhCCCcHHHH-hhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHH
Confidence 5788887666555 55555 5999999999999999999999999999999999887 99999999
Q ss_pred HHHHHHHHHH
Q 037952 67 CWNTHIKRKL 76 (148)
Q Consensus 67 rw~~~~~~~~ 76 (148)
||+.++++++
T Consensus 96 rw~~~~~~~~ 105 (105)
T 1gv2_A 96 HWNSTMRRKV 105 (105)
T ss_dssp HHHHHTC---
T ss_pred HHHHHHhccC
Confidence 9999998764
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.88 E-value=1.9e-23 Score=153.79 Aligned_cols=76 Identities=32% Similarity=0.560 Sum_probs=66.4
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHHHHHHHhhc---------------CchhHHHH
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEEDKLIIKLHR---------------RTDNEIKN 66 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd~~l~~l~~---------------Rt~~~ikn 66 (148)
+|.++|..+|-.| |..++ +|+++|||+||.+||+|++++|+||+|||++|+++|. ||+++|+|
T Consensus 16 ~v~~~g~~~W~~I-a~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~ 93 (131)
T 3zqc_A 16 YVKENGPQNWPRI-TSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKN 93 (131)
T ss_dssp HHHHHCSCCGGGG-TTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHH
T ss_pred HHHHhCcCCHHHH-HHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHH
Confidence 5778887766665 55555 5999999999999999999999999999999999887 99999999
Q ss_pred HHHHHHHHHHHhC
Q 037952 67 CWNTHIKRKLLNH 79 (148)
Q Consensus 67 rw~~~~~~~~~~~ 79 (148)
||+.++++++...
T Consensus 94 rw~~~l~~~~~~~ 106 (131)
T 3zqc_A 94 RWNSSISKRISTN 106 (131)
T ss_dssp HHHHTTGGGCCCC
T ss_pred HHHHHHHHHhhcC
Confidence 9999999887553
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.87 E-value=1.4e-22 Score=148.44 Aligned_cols=71 Identities=31% Similarity=0.501 Sum_probs=63.1
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHHHHHHHhhc---------------CchhHHHH
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEEDKLIIKLHR---------------RTDNEIKN 66 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd~~l~~l~~---------------Rt~~~ikn 66 (148)
+|.+||. .|..||+.++ +|+++|||+||.+||+|++++|+||+|||++|++++. ||+++|||
T Consensus 25 ~v~~~G~--~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~ 101 (126)
T 3osg_A 25 AVAQHGS--DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKN 101 (126)
T ss_dssp HHHHHTT--CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHH
T ss_pred HHHHhCC--CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHH
Confidence 5788887 4555666665 6999999999999999999999999999999999887 99999999
Q ss_pred HHHHHHHHH
Q 037952 67 CWNTHIKRK 75 (148)
Q Consensus 67 rw~~~~~~~ 75 (148)
||+.++++.
T Consensus 102 rw~~l~~k~ 110 (126)
T 3osg_A 102 RWVTISNKL 110 (126)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999988774
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.86 E-value=1.5e-22 Score=148.24 Aligned_cols=73 Identities=38% Similarity=0.714 Sum_probs=62.8
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHHHHHHHhhc---------------CchhHHHH
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEEDKLIIKLHR---------------RTDNEIKN 66 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd~~l~~l~~---------------Rt~~~ikn 66 (148)
+|++||..+|-.| |+.++ +|+++||++||.+||+|+|++++||+|||++|++++. ||+++|||
T Consensus 41 ~v~~~g~~~W~~I-a~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~ 118 (128)
T 1h8a_C 41 HVQKYGPKRWSDI-AKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKN 118 (128)
T ss_dssp HHHHTCSCCHHHH-HHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHH
T ss_pred HHHHHCCCCHHHH-HHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHH
Confidence 5778887665555 55555 5999999999999999999999999999999999887 99999999
Q ss_pred HHHHHHHHHH
Q 037952 67 CWNTHIKRKL 76 (148)
Q Consensus 67 rw~~~~~~~~ 76 (148)
||+.++++++
T Consensus 119 r~~~~~~~~~ 128 (128)
T 1h8a_C 119 HWNSTMRRKV 128 (128)
T ss_dssp HHHTTTTC--
T ss_pred HHHHHHhccC
Confidence 9999988763
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.83 E-value=3.7e-21 Score=145.36 Aligned_cols=73 Identities=41% Similarity=0.705 Sum_probs=62.3
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHHHHHHHhhc---------------CchhHHHH
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEEDKLIIKLHR---------------RTDNEIKN 66 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd~~l~~l~~---------------Rt~~~ikn 66 (148)
++++||...|- .||+.++ +|+++|||+||.+||+|++++++||+|||++|++++. ||+++|||
T Consensus 72 ~v~~~g~~~W~-~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~kn 149 (159)
T 1h89_C 72 LVQKYGPKRWS-VIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKN 149 (159)
T ss_dssp HHHHHCSCCHH-HHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHH
T ss_pred HHHHhCcccHH-HHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHH
Confidence 46777765555 4566665 6999999999999999999999999999999999887 99999999
Q ss_pred HHHHHHHHHH
Q 037952 67 CWNTHIKRKL 76 (148)
Q Consensus 67 rw~~~~~~~~ 76 (148)
||+.++++++
T Consensus 150 r~~~~~r~~~ 159 (159)
T 1h89_C 150 HWNSTMRRKV 159 (159)
T ss_dssp HHHTTTCC--
T ss_pred HHHHHHhccC
Confidence 9999988764
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.78 E-value=9.3e-20 Score=137.67 Aligned_cols=70 Identities=29% Similarity=0.564 Sum_probs=44.6
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHHHHHHHhhc----------------CchhHHH
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEEDKLIIKLHR----------------RTDNEIK 65 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd~~l~~l~~----------------Rt~~~ik 65 (148)
+|.++|..+|-.| |..++ +|+++|||+||.+||+|++++++||+|||++|++++. ||+++|+
T Consensus 20 ~v~~~g~~~W~~I-a~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr 97 (159)
T 1h89_C 20 LVEQNGTDDWKVI-ANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCR 97 (159)
T ss_dssp -------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHH
T ss_pred HHHHhCCCCHHHH-HHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHH
Confidence 5778887665555 55665 5999999999999999999999999999999999886 9999999
Q ss_pred HHHHHHHH
Q 037952 66 NCWNTHIK 73 (148)
Q Consensus 66 nrw~~~~~ 73 (148)
+||..++.
T Consensus 98 ~Rw~~~l~ 105 (159)
T 1h89_C 98 ERWHNHLN 105 (159)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHhC
Confidence 99988764
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.72 E-value=2.6e-18 Score=125.59 Aligned_cols=57 Identities=28% Similarity=0.584 Sum_probs=34.6
Q ss_pred hhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHHHHHHHhhc----------------CchhHHHHHHHHHHH
Q 037952 16 INYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEEDKLIIKLHR----------------RTDNEIKNCWNTHIK 73 (148)
Q Consensus 16 ~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd~~l~~l~~----------------Rt~~~iknrw~~~~~ 73 (148)
|+.++ +|+++||++||.++|+|++++|+||+|||++|++++. ||+.+|++||..+|.
T Consensus 2 a~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 2 EAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLN 74 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTC
T ss_pred ccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcc
Confidence 44555 6999999999999999999999999999999999887 999999999987664
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5.1e-17 Score=107.65 Aligned_cols=47 Identities=17% Similarity=0.479 Sum_probs=39.8
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHH
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEED 50 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd 50 (148)
+|.+||..+|-.| |+.++ +|+++|||+||.+||+|+|++++||+|||
T Consensus 23 ~v~~~G~~~W~~I-a~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 23 AVMKYGKNQWSRI-ASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp HHHHTCSSCHHHH-HHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred HHHHHCcCCHHHH-HHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 5677886665555 55565 69999999999999999999999999997
No 10
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.53 E-value=2.6e-15 Score=100.90 Aligned_cols=42 Identities=17% Similarity=0.226 Sum_probs=32.3
Q ss_pred HHhhhccCCCCCCCCCCHHHHHHHHHhhc--------------CchhHHHHHHHHH
Q 037952 30 SRWINYLHPHLKCGNFTNEEDKLIIKLHR--------------RTDNEIKNCWNTH 71 (148)
Q Consensus 30 ~Rw~n~L~p~i~~~~wt~eEd~~l~~l~~--------------Rt~~~iknrw~~~ 71 (148)
-||.|||+|+|++++||+|||++|++|+. ||+++|||||+.+
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~lgRt~~q~knRw~~L 66 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAALGRSASSVKDRCRLM 66 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHHTSCHHHHHHHHHHC
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 48999999999999999999999999887 9999999999864
No 11
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.8e-13 Score=88.56 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=43.4
Q ss_pred hccCCCCCCCCCCHHHHHHHHHhhc--------------CchhHHHHHHHHHHHHHHHhCC
Q 037952 34 NYLHPHLKCGNFTNEEDKLIIKLHR--------------RTDNEIKNCWNTHIKRKLLNHG 80 (148)
Q Consensus 34 n~L~p~i~~~~wt~eEd~~l~~l~~--------------Rt~~~iknrw~~~~~~~~~~~~ 80 (148)
.||+|.|++++||+|||++|++++. ||+++||+||+.+++..+....
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPIIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhcccCcCHHHHHHHHHHHhChHhcCCC
Confidence 4899999999999999999999887 9999999999999999887644
No 12
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.32 E-value=2e-12 Score=85.95 Aligned_cols=48 Identities=25% Similarity=0.162 Sum_probs=42.0
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhc---------------CchhHHHHHHHHHHHHHHHhCCCCCC
Q 037952 36 LHPHLKCGNFTNEEDKLIIKLHR---------------RTDNEIKNCWNTHIKRKLLNHGLDPQ 84 (148)
Q Consensus 36 L~p~i~~~~wt~eEd~~l~~l~~---------------Rt~~~iknrw~~~~~~~~~~~~~~~~ 84 (148)
++|++++++||+|||++|++++. ||+++|||||+.++++++.. +.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~ 65 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKE 65 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCC
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCC
Confidence 68999999999999999999887 99999999999999887655 44443
No 13
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.13 E-value=8.3e-11 Score=94.52 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=44.1
Q ss_pred HHHHHhhhh----hhHHhhhccCCCCChhHHHHHhhhccCCCCC-----------------------------CCCCCHH
Q 037952 2 TIHKAAQLI----YVHVSINYSGLLRCGKSCRSRWINYLHPHLK-----------------------------CGNFTNE 48 (148)
Q Consensus 2 ~i~k~~~~~----~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~-----------------------------~~~wt~e 48 (148)
++.++|..+ -|..||+++. |||+.|||.||.+||+|.|+ +..||.|
T Consensus 22 ~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ikis~lp~siK~rftae 100 (246)
T 1ign_A 22 VVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLIKTKVLPPSIKRKFSAD 100 (246)
T ss_dssp HHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCBCEESSCCCCSCCCCCHH
T ss_pred HHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCceeeeccCccccCccchh
Confidence 356666642 3666677777 79999999999999999997 8999999
Q ss_pred HHHHHHH
Q 037952 49 EDKLIIK 55 (148)
Q Consensus 49 Ed~~l~~ 55 (148)
||-.|+.
T Consensus 101 eDy~L~~ 107 (246)
T 1ign_A 101 EDYTLAI 107 (246)
T ss_dssp HHHHHHH
T ss_pred ccHHHHH
Confidence 9988877
No 14
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.12 E-value=2.1e-11 Score=80.25 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=36.0
Q ss_pred HHHHHhhhhhhHHhhhccCC-CCChhHHHHHhhhccCCCCCCCCCC
Q 037952 2 TIHKAAQLIYVHVSINYSGL-LRCGKSCRSRWINYLHPHLKCGNFT 46 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~-~R~~kqCr~Rw~n~L~p~i~~~~wt 46 (148)
+|++||...|-.|+..+. + +|+++|||+||.+||+|+|.+++.+
T Consensus 24 ~v~~~G~~~W~~Ia~~~~-~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 24 GVRKYGEGNWSKILLHYK-FNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp HHHHHCSSCHHHHHHHSC-CSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred HHHHHCCCcHHHHHHHcC-cCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 578888777766655554 4 5999999999999999999999864
No 15
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.11 E-value=1.1e-10 Score=85.18 Aligned_cols=63 Identities=11% Similarity=0.198 Sum_probs=53.6
Q ss_pred HHHHHhhhhhhHHhhhc---cCCCCChhHHHHHhhhccC-----CCCCCC-CCCHHHHHHHHHhhcCchhHHHHHHH
Q 037952 2 TIHKAAQLIYVHVSINY---SGLLRCGKSCRSRWINYLH-----PHLKCG-NFTNEEDKLIIKLHRRTDNEIKNCWN 69 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~---~g~~R~~kqCr~Rw~n~L~-----p~i~~~-~wt~eEd~~l~~l~~Rt~~~iknrw~ 69 (148)
.|++||...|-.|+..+ +. +||+.||++||.|+|+ |.+++| +|++||+++|+.+| ....|+|.
T Consensus 31 gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~~~h----~~~gn~~~ 102 (121)
T 2juh_A 31 AVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAH----AYWSQQQG 102 (121)
T ss_dssp HHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHHHHH----HHHHHHHC
T ss_pred HHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHHHHH----HHHccchh
Confidence 57899998888886654 12 5999999999999998 999999 99999999999998 45667773
No 16
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.10 E-value=4.3e-11 Score=74.50 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=28.7
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCC
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPH 39 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~ 39 (148)
+|.+||..+|-.| |+.++ +|+++|||+||.+||+|+
T Consensus 17 ~v~~~G~~~W~~I-a~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 17 LVQKYGPKRWSVI-AKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp HHHHHCTTCHHHH-HTTST-TCCHHHHHHHHHHTTSCC
T ss_pred HHHHHCcChHHHH-HHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5778887666555 55555 599999999999999995
No 17
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.09 E-value=7.7e-11 Score=86.14 Aligned_cols=56 Identities=11% Similarity=0.163 Sum_probs=48.7
Q ss_pred HHHHHhhhhhhHHhhhcc---CCCCChhHHHHHhhhcc-----CCCCCCCCCCHHH-HHHHHHhhc
Q 037952 2 TIHKAAQLIYVHVSINYS---GLLRCGKSCRSRWINYL-----HPHLKCGNFTNEE-DKLIIKLHR 58 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~---g~~R~~kqCr~Rw~n~L-----~p~i~~~~wt~eE-d~~l~~l~~ 58 (148)
.|++||...|-.|+.... . +||+.||++||.|+| +|.+++|.|+++| +++|+.+|+
T Consensus 45 gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~~h~ 109 (122)
T 2roh_A 45 AVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQA 109 (122)
T ss_dssp HHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHH
Confidence 588999988888866531 3 599999999999999 8999999999999 899999885
No 18
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.07 E-value=6.6e-11 Score=75.71 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=30.5
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCC
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLK 41 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~ 41 (148)
+|.+||..+|-.|+. .++ +|+++|||+||.+||+|+|+
T Consensus 22 ~v~~~G~~~W~~Ia~-~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 22 LVRQFGQQDWKFLAS-HFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp HHHHTCTTCHHHHHH-HCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred HHHHhCCCCHHHHHH-Hcc-CCCHHHHHHHHHHHcCCccC
Confidence 577888766666655 454 59999999999999999986
No 19
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.06 E-value=7.8e-11 Score=75.37 Aligned_cols=38 Identities=26% Similarity=0.326 Sum_probs=34.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhc----------------CchhHHHHHHHHHHHH
Q 037952 37 HPHLKCGNFTNEEDKLIIKLHR----------------RTDNEIKNCWNTHIKR 74 (148)
Q Consensus 37 ~p~i~~~~wt~eEd~~l~~l~~----------------Rt~~~iknrw~~~~~~ 74 (148)
+|.+++++||+|||++|+++|. ||+.||++||+.+|+.
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSG 56 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCC
Confidence 6899999999999999999887 9999999999887654
No 20
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.01 E-value=1.3e-10 Score=72.29 Aligned_cols=36 Identities=22% Similarity=0.474 Sum_probs=28.8
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCC
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPH 39 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~ 39 (148)
+|++||..+|-.|+ +.++ +|+++|||+||.+||+|+
T Consensus 17 ~v~~~G~~~W~~Ia-~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 17 LVEQNGTDDWKVIA-NYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp HHHHHCSSCHHHHH-HTST-TCCHHHHHHHHHHHHSCC
T ss_pred HHHHhCCCCHHHHH-HHcC-CCCHHHHHHHHHHHcCcC
Confidence 57788876666664 4554 599999999999999996
No 21
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.54 E-value=4.8e-11 Score=82.48 Aligned_cols=44 Identities=25% Similarity=0.113 Sum_probs=39.6
Q ss_pred hccCCCCCCCCCCHHHHHHHHHhhc---------------CchhHHHHHHHHHHHHHHH
Q 037952 34 NYLHPHLKCGNFTNEEDKLIIKLHR---------------RTDNEIKNCWNTHIKRKLL 77 (148)
Q Consensus 34 n~L~p~i~~~~wt~eEd~~l~~l~~---------------Rt~~~iknrw~~~~~~~~~ 77 (148)
..++|+|++|+||+|||++|+++|. ||+++|||||+.++++.-.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l 66 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNL 66 (89)
Confidence 4688999999999999999999887 9999999999999887543
No 22
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=98.96 E-value=5.1e-10 Score=73.52 Aligned_cols=45 Identities=33% Similarity=0.303 Sum_probs=39.4
Q ss_pred hccCCCCCCCCCCHHHHHHHHHhhc------------------CchhHHHHHHHHHHHHHHHh
Q 037952 34 NYLHPHLKCGNFTNEEDKLIIKLHR------------------RTDNEIKNCWNTHIKRKLLN 78 (148)
Q Consensus 34 n~L~p~i~~~~wt~eEd~~l~~l~~------------------Rt~~~iknrw~~~~~~~~~~ 78 (148)
+...|..++++||+|||++|+++|. ||++||++||..+|+..+.+
T Consensus 2 ~~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 2 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp -CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence 4567889999999999999999777 99999999999999887654
No 23
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=98.95 E-value=4.9e-10 Score=69.58 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=30.0
Q ss_pred CCCCCCCHHHHHHHHHhhc----------------CchhHHHHHHHHHHH
Q 037952 40 LKCGNFTNEEDKLIIKLHR----------------RTDNEIKNCWNTHIK 73 (148)
Q Consensus 40 i~~~~wt~eEd~~l~~l~~----------------Rt~~~iknrw~~~~~ 73 (148)
|++++||+|||++|++++. ||+.||++||+.+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 6899999999999999887 999999999998774
No 24
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.94 E-value=7.8e-10 Score=70.89 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=33.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhc----------------CchhHHHHHHHHHHH
Q 037952 37 HPHLKCGNFTNEEDKLIIKLHR----------------RTDNEIKNCWNTHIK 73 (148)
Q Consensus 37 ~p~i~~~~wt~eEd~~l~~l~~----------------Rt~~~iknrw~~~~~ 73 (148)
.|.|.+++||+|||++|++++. ||+.||++||..++.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 5889999999999999999887 999999999987654
No 25
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=98.94 E-value=4.5e-10 Score=69.81 Aligned_cols=34 Identities=35% Similarity=0.676 Sum_probs=31.0
Q ss_pred CCCCCCCHHHHHHHHHhhc----------------CchhHHHHHHHHHHH
Q 037952 40 LKCGNFTNEEDKLIIKLHR----------------RTDNEIKNCWNTHIK 73 (148)
Q Consensus 40 i~~~~wt~eEd~~l~~l~~----------------Rt~~~iknrw~~~~~ 73 (148)
|++++||+|||++|++++. ||+.+|++||..+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 6899999999999999887 999999999987663
No 26
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.94 E-value=3e-10 Score=74.09 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=32.0
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCC
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLK 41 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~ 41 (148)
+|++||..+|-.|+..+.-.+|+++|||+||.|+|+|+|+
T Consensus 25 ~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 25 GVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp HHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 6889998887777554431159999999999999999986
No 27
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=4e-10 Score=74.15 Aligned_cols=41 Identities=17% Similarity=0.294 Sum_probs=36.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhhc----------------CchhHHHHHHHHHHHHHHH
Q 037952 37 HPHLKCGNFTNEEDKLIIKLHR----------------RTDNEIKNCWNTHIKRKLL 77 (148)
Q Consensus 37 ~p~i~~~~wt~eEd~~l~~l~~----------------Rt~~~iknrw~~~~~~~~~ 77 (148)
.|.+++++||+|||++|+++|. ||+.||++||+.+|+..+.
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~ 60 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIK 60 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCccc
Confidence 5899999999999999999887 9999999999987765543
No 28
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1.8e-09 Score=71.83 Aligned_cols=42 Identities=17% Similarity=0.048 Sum_probs=36.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhc---------------------CchhHHHHHHHHHHHHHHHh
Q 037952 37 HPHLKCGNFTNEEDKLIIKLHR---------------------RTDNEIKNCWNTHIKRKLLN 78 (148)
Q Consensus 37 ~p~i~~~~wt~eEd~~l~~l~~---------------------Rt~~~iknrw~~~~~~~~~~ 78 (148)
+|++++++||+|||++|++++. ||+.||++||+.++++.+..
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~ 65 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA 65 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999998775 99999999998888775443
No 29
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.89 E-value=1.1e-09 Score=68.44 Aligned_cols=34 Identities=35% Similarity=0.329 Sum_probs=31.1
Q ss_pred CCCCCCHHHHHHHHHhhc------------------CchhHHHHHHHHHHHH
Q 037952 41 KCGNFTNEEDKLIIKLHR------------------RTDNEIKNCWNTHIKR 74 (148)
Q Consensus 41 ~~~~wt~eEd~~l~~l~~------------------Rt~~~iknrw~~~~~~ 74 (148)
++++||+|||++|+++|. ||+.+|++||..++|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 589999999999999777 9999999999998875
No 30
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=98.80 E-value=5e-09 Score=68.26 Aligned_cols=36 Identities=28% Similarity=0.276 Sum_probs=31.7
Q ss_pred CCCCCCCHHHHHHHHHhhc------------------CchhHHHHHHHHHHHHH
Q 037952 40 LKCGNFTNEEDKLIIKLHR------------------RTDNEIKNCWNTHIKRK 75 (148)
Q Consensus 40 i~~~~wt~eEd~~l~~l~~------------------Rt~~~iknrw~~~~~~~ 75 (148)
.++++||+|||++|+++|. ||+.||++||..++|..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4789999999999999877 99999999999887653
No 31
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.77 E-value=5.4e-09 Score=71.55 Aligned_cols=55 Identities=11% Similarity=0.230 Sum_probs=45.7
Q ss_pred HHHHHhhhhhhHHhhh----ccCCCCChhHHHHHhhhcc-----CCCCCCC-CCCHHHHHHHHHhhc
Q 037952 2 TIHKAAQLIYVHVSIN----YSGLLRCGKSCRSRWINYL-----HPHLKCG-NFTNEEDKLIIKLHR 58 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~----~~g~~R~~kqCr~Rw~n~L-----~p~i~~~-~wt~eEd~~l~~l~~ 58 (148)
.|++||.++|-.|+.. +. +||+.||++||.|+| +|.+++| +..+++.+.++.|++
T Consensus 14 gv~k~G~g~W~~I~~~~~~~~~--~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a 78 (83)
T 2ckx_A 14 AVEHLGTGRWRDVKMRAFDNAD--HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHA 78 (83)
T ss_dssp HHHHHCSSCHHHHHHHHCTTCT--TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHCCCCcHHHHHhhccccC--CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHH
Confidence 5789999888887654 34 599999999999998 8998887 777777788998874
No 32
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=5.5e-10 Score=72.71 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=31.6
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCCCCC
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKCGN 44 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~ 44 (148)
+++++|. -|..||+++| ||++|||+||.+||+|.+++++
T Consensus 23 ~~~~~g~--~W~~Ia~~~g--Rt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 23 LAKLMPT--QWRTIAPIIG--RTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp HHHHCTT--CHHHHHHHHS--SCHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHcCC--CHHHHhcccC--cCHHHHHHHHHHHhChHhcCCC
Confidence 4566776 4566666888 9999999999999999998764
No 33
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.75 E-value=3.7e-09 Score=67.68 Aligned_cols=37 Identities=11% Similarity=0.222 Sum_probs=29.2
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCC
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHL 40 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i 40 (148)
+|++||..+|-.| |+.++ +|+++|||+||.+||.|.-
T Consensus 22 ~v~~~G~~~W~~I-a~~~~-~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 22 AVMDCGFGNWQDV-ANQMC-TKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp HHHHTCTTCHHHH-HHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred HHHHHCcCcHHHH-HHHhC-CCCHHHHHHHHHHHccCCC
Confidence 5788887666555 55555 5999999999999998864
No 34
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=5.3e-09 Score=69.51 Aligned_cols=43 Identities=19% Similarity=0.037 Sum_probs=34.0
Q ss_pred HHHHHhh----hhhhHHhhhccCCCCChhHHHHHhhhccCCCCCCCCC
Q 037952 2 TIHKAAQ----LIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKCGNF 45 (148)
Q Consensus 2 ~i~k~~~----~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~w 45 (148)
+|.+||. ..-|..||+.++ +||++|||+||.+||.+.++.|-.
T Consensus 22 ~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 22 LLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp HHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred HHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCC
Confidence 5778885 244555666676 699999999999999999988753
No 35
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.65 E-value=3.1e-08 Score=63.00 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=31.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhc-----------------CchhHHHHHHHHH
Q 037952 36 LHPHLKCGNFTNEEDKLIIKLHR-----------------RTDNEIKNCWNTH 71 (148)
Q Consensus 36 L~p~i~~~~wt~eEd~~l~~l~~-----------------Rt~~~iknrw~~~ 71 (148)
++..|.+++||+|||++|++++. ||+.||++||..+
T Consensus 3 ~~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 3 SGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp SCCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 34567899999999999999877 9999999999765
No 36
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=98.61 E-value=1.6e-08 Score=63.05 Aligned_cols=35 Identities=14% Similarity=0.313 Sum_probs=27.7
Q ss_pred HHHHHhhhhhhHHhhhccCC-CCChhHHHHHhhhccC
Q 037952 2 TIHKAAQLIYVHVSINYSGL-LRCGKSCRSRWINYLH 37 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~-~R~~kqCr~Rw~n~L~ 37 (148)
+|++||..+|-.|+..+. + +||++||++||.++|+
T Consensus 16 ~v~~~G~~~W~~Ia~~~~-~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 16 GVRKYGEGNWSKILLHYK-FNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp HHHHHCTTCHHHHHHHSC-CSSCCHHHHHHHHHHHHT
T ss_pred HHHHHCcCCHHHHHHHcC-CCCCCHHHHHHHHHHHHc
Confidence 578888777766655554 4 4999999999999985
No 37
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.60 E-value=1.8e-08 Score=64.09 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=26.9
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhcc
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYL 36 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L 36 (148)
+|++||..+|-.|+. .+|++||++|||+||.+|+
T Consensus 23 ~v~~~G~~~W~~IA~-~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 23 ACETLGLGNWADIAD-YVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp HHHHTTTTCHHHHHH-HHCSSCCHHHHHHHHHHHT
T ss_pred HHHHHCcCCHHHHHH-HHCCCCCHHHHHHHHHHHc
Confidence 688898777666655 5544699999999999886
No 38
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.59 E-value=1.6e-08 Score=81.21 Aligned_cols=40 Identities=30% Similarity=0.564 Sum_probs=33.6
Q ss_pred CCCCCCCCCHHHHHHHHHhhc---------------------CchhHHHHHHHHHHHHHHH
Q 037952 38 PHLKCGNFTNEEDKLIIKLHR---------------------RTDNEIKNCWNTHIKRKLL 77 (148)
Q Consensus 38 p~i~~~~wt~eEd~~l~~l~~---------------------Rt~~~iknrw~~~~~~~~~ 77 (148)
+++++++||+|||++|+.+|. ||+|+|||||+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 578999999999999999877 9999999999999999764
No 39
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.58 E-value=6.2e-08 Score=67.60 Aligned_cols=50 Identities=18% Similarity=0.272 Sum_probs=45.0
Q ss_pred hHHHHHhhhccCCCCCCCCCCHHHHHHHHHhhc--------------------CchhHHHHHHHHHHHHHHHhC
Q 037952 26 KSCRSRWINYLHPHLKCGNFTNEEDKLIIKLHR--------------------RTDNEIKNCWNTHIKRKLLNH 79 (148)
Q Consensus 26 kqCr~Rw~n~L~p~i~~~~wt~eEd~~l~~l~~--------------------Rt~~~iknrw~~~~~~~~~~~ 79 (148)
.=|.++|.+||.| ++||.||+..|++|+. ||..+||+||+.+.++.+...
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4588999999988 9999999999999887 999999999999888877664
No 40
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.55 E-value=8e-08 Score=70.00 Aligned_cols=42 Identities=19% Similarity=0.294 Sum_probs=37.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhc--------------------CchhHHHHHHHHHHHHHHH
Q 037952 36 LHPHLKCGNFTNEEDKLIIKLHR--------------------RTDNEIKNCWNTHIKRKLL 77 (148)
Q Consensus 36 L~p~i~~~~wt~eEd~~l~~l~~--------------------Rt~~~iknrw~~~~~~~~~ 77 (148)
+.+..++++||+|||++|+++|. ||+++||+||..+++....
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~ 72 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI 72 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhcc
Confidence 67789999999999999999777 9999999999999987543
No 41
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.51 E-value=9.1e-08 Score=63.90 Aligned_cols=37 Identities=8% Similarity=0.144 Sum_probs=32.3
Q ss_pred CCCCCCCCCCHHHHHHHHHhhc-------------------CchhHHHHHHHHHHH
Q 037952 37 HPHLKCGNFTNEEDKLIIKLHR-------------------RTDNEIKNCWNTHIK 73 (148)
Q Consensus 37 ~p~i~~~~wt~eEd~~l~~l~~-------------------Rt~~~iknrw~~~~~ 73 (148)
.|.+.+++||+|||.+|+.++. ||+++|++||+.+++
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3678899999999999998766 999999999987654
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.46 E-value=1.7e-07 Score=66.66 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=34.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhhc--------------------CchhHHHHHHHHHHHHH
Q 037952 37 HPHLKCGNFTNEEDKLIIKLHR--------------------RTDNEIKNCWNTHIKRK 75 (148)
Q Consensus 37 ~p~i~~~~wt~eEd~~l~~l~~--------------------Rt~~~iknrw~~~~~~~ 75 (148)
.+..++++||+|||++|+..|. ||+++||+||..+++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 4578899999999999999776 99999999999988764
No 43
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.42 E-value=3.9e-08 Score=64.95 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=31.6
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCCC
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKC 42 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~ 42 (148)
++.+||. -|..||++++ +||+.||+.||.+||++.++.
T Consensus 23 ~~~~~G~--~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 23 GLAKFGR--RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp HHHHTCS--CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 5778887 5566666776 799999999999999998887
No 44
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.38 E-value=2.2e-07 Score=64.93 Aligned_cols=34 Identities=35% Similarity=0.675 Sum_probs=31.3
Q ss_pred CCCCCCCCHHHHHHHHHhhc----------------CchhHHHHHHHHHH
Q 037952 39 HLKCGNFTNEEDKLIIKLHR----------------RTDNEIKNCWNTHI 72 (148)
Q Consensus 39 ~i~~~~wt~eEd~~l~~l~~----------------Rt~~~iknrw~~~~ 72 (148)
+|++|+||+|||++|++++. ||+.+|+.||..++
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 58999999999999999887 99999999998765
No 45
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.35 E-value=4.4e-07 Score=61.94 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHhhc--------------------CchhHHHHHHHHHHHHHHH
Q 037952 43 GNFTNEEDKLIIKLHR--------------------RTDNEIKNCWNTHIKRKLL 77 (148)
Q Consensus 43 ~~wt~eEd~~l~~l~~--------------------Rt~~~iknrw~~~~~~~~~ 77 (148)
++||+|||++|+.+|. ||+++||+||..++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~ 55 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI 55 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccC
Confidence 4899999999999777 9999999999999987643
No 46
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.35 E-value=3.1e-07 Score=59.55 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=31.1
Q ss_pred CCCCCCHHHHHHHHHhhc------------------CchhHHHHHHHHHHHH
Q 037952 41 KCGNFTNEEDKLIIKLHR------------------RTDNEIKNCWNTHIKR 74 (148)
Q Consensus 41 ~~~~wt~eEd~~l~~l~~------------------Rt~~~iknrw~~~~~~ 74 (148)
++.+||+|||+.|++.|. ||+.+||+||..++|+
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 688999999999999887 9999999999987765
No 47
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.29 E-value=9.4e-07 Score=64.41 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=35.2
Q ss_pred CCCCCCCCCCHHHHHHHHHhhc--------------------CchhHHHHHHHHHHHHHH
Q 037952 37 HPHLKCGNFTNEEDKLIIKLHR--------------------RTDNEIKNCWNTHIKRKL 76 (148)
Q Consensus 37 ~p~i~~~~wt~eEd~~l~~l~~--------------------Rt~~~iknrw~~~~~~~~ 76 (148)
...-++++||+|||+.|+++|. ||+.+||+||..+++...
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 4456889999999999999776 999999999999988754
No 48
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.29 E-value=5e-07 Score=64.27 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=44.4
Q ss_pred HHHHHhhhhhhHHhhhccC--CCCChhHHHHHhhhcc-----CCCCCCCCCCHHHHHH-HHHhh
Q 037952 2 TIHKAAQLIYVHVSINYSG--LLRCGKSCRSRWINYL-----HPHLKCGNFTNEEDKL-IIKLH 57 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g--~~R~~kqCr~Rw~n~L-----~p~i~~~~wt~eEd~~-l~~l~ 57 (148)
.|++||...|-.|+..+.. .+||+.||++||.|+| +|.+++|.-+++|=-. ++.|+
T Consensus 27 gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~~~~ 90 (105)
T 2aje_A 27 AVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVLNAH 90 (105)
T ss_dssp HHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHHHHH
Confidence 5889999888887664410 1599999999999999 7999999888887644 66665
No 49
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.26 E-value=8e-07 Score=64.31 Aligned_cols=38 Identities=21% Similarity=0.361 Sum_probs=33.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHhhc---------------CchhHHHHHHHHHHH
Q 037952 36 LHPHLKCGNFTNEEDKLIIKLHR---------------RTDNEIKNCWNTHIK 73 (148)
Q Consensus 36 L~p~i~~~~wt~eEd~~l~~l~~---------------Rt~~~iknrw~~~~~ 73 (148)
..+.+++|+||+|||++|++++. ||..+|+.||..++.
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcc
Confidence 45789999999999999999887 999999999988774
No 50
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.24 E-value=3.4e-07 Score=66.67 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=36.7
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCCCCCCCHH
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNE 48 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~e 48 (148)
++.+||. -|..||+.++ +|++.||+.||.++|++.+..++|+.+
T Consensus 68 ~~~~~G~--~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 68 NYLKLGS--KWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKE 111 (131)
T ss_dssp HHHHSCS--CHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred HHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCccc
Confidence 4566774 3677777776 799999999999999999999999865
No 51
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.20 E-value=4.4e-07 Score=61.28 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=26.7
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhc
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINY 35 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~ 35 (148)
+|++|| .-|..||+.+| +||++||++||.++
T Consensus 32 ~v~~~G--~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 32 ALEMYK--DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp HHHHSS--SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred HHHHhC--CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 688999 55677778888 79999999999998
No 52
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.17 E-value=2.5e-06 Score=59.33 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=30.2
Q ss_pred CCCCCCHHHHHHHHHhhc-------------------CchhHHHHHHHHHHHHH
Q 037952 41 KCGNFTNEEDKLIIKLHR-------------------RTDNEIKNCWNTHIKRK 75 (148)
Q Consensus 41 ~~~~wt~eEd~~l~~l~~-------------------Rt~~~iknrw~~~~~~~ 75 (148)
.+++||+|||.+|+.++. ||+++|++||+.+++..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 367999999999988665 99999999999988764
No 53
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.16 E-value=1.8e-06 Score=58.26 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=28.6
Q ss_pred CCCCCCCCHHHHHHHHHhhc---------------CchhHHHHHHHH
Q 037952 39 HLKCGNFTNEEDKLIIKLHR---------------RTDNEIKNCWNT 70 (148)
Q Consensus 39 ~i~~~~wt~eEd~~l~~l~~---------------Rt~~~iknrw~~ 70 (148)
...+++||+|||++|++++. ||+.||++||..
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~ 61 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLR 61 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTT
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 45689999999999999877 999999999954
No 54
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.05 E-value=3e-06 Score=59.55 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHhhc----------------CchhHHHHHHHHHHH
Q 037952 42 CGNFTNEEDKLIIKLHR----------------RTDNEIKNCWNTHIK 73 (148)
Q Consensus 42 ~~~wt~eEd~~l~~l~~----------------Rt~~~iknrw~~~~~ 73 (148)
+|+||+|||++|+++|. ||..+|+.||..+|.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYIN 48 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHc
Confidence 68999999999999887 999999999987664
No 55
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.96 E-value=3.8e-06 Score=55.96 Aligned_cols=35 Identities=6% Similarity=0.067 Sum_probs=26.5
Q ss_pred HHHHHhh--hhhhHHhhhccCCCCChhHHHHHhhhccC
Q 037952 2 TIHKAAQ--LIYVHVSINYSGLLRCGKSCRSRWINYLH 37 (148)
Q Consensus 2 ~i~k~~~--~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~ 37 (148)
||.+||. ..-|..||++++ |||++||+.||.+.+.
T Consensus 32 al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 32 ALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS 68 (73)
T ss_dssp HHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred HHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 5777873 245666677776 7999999999998764
No 56
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.19 E-value=1.1e-06 Score=60.30 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=28.1
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCC
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHP 38 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p 38 (148)
++.+||. . |..||+.++ +||+.||+.||.+||+-
T Consensus 30 ~~~~~G~-~-W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 30 GLLEHGR-N-WSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 5778887 3 677777777 79999999999999864
No 57
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.88 E-value=7.6e-06 Score=54.50 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=27.9
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccCCCCCCC
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLHPHLKCG 43 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~ 43 (148)
+++++|.. |..||+.+| ||+.||+.||. .|....+.|
T Consensus 37 l~~~~G~k--W~~IA~~lg--Rt~~q~knRw~-~L~~~~~~G 73 (73)
T 2llk_A 37 LRIKHGND--WATIGAALG--RSASSVKDRCR-LMKDTCNTG 73 (73)
T ss_dssp HHHHHSSC--HHHHHHHHT--SCHHHHHHHHH-HCSCCCSCC
T ss_pred HHHHHCCC--HHHHHHHhC--CCHHHHHHHHH-HHHHHccCC
Confidence 46777865 666666666 99999999997 677776654
No 58
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.74 E-value=3.3e-05 Score=51.20 Aligned_cols=37 Identities=8% Similarity=0.030 Sum_probs=32.0
Q ss_pred CCCCCCCCCHHHHHHHHHhhc------------------CchhHHHHHHHHHHHH
Q 037952 38 PHLKCGNFTNEEDKLIIKLHR------------------RTDNEIKNCWNTHIKR 74 (148)
Q Consensus 38 p~i~~~~wt~eEd~~l~~l~~------------------Rt~~~iknrw~~~~~~ 74 (148)
+..+.++||.|||.+|.++++ ||..+|++||..|.+.
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lgRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELGRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHTSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 456788999999999999777 9999999999887655
No 59
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.64 E-value=2e-05 Score=54.71 Aligned_cols=34 Identities=3% Similarity=-0.151 Sum_probs=25.5
Q ss_pred HHHHHhh--hhhhHHhhhccCCCCChhHHHHHhhhcc
Q 037952 2 TIHKAAQ--LIYVHVSINYSGLLRCGKSCRSRWINYL 36 (148)
Q Consensus 2 ~i~k~~~--~~~~~~~~~~~g~~R~~kqCr~Rw~n~L 36 (148)
||.+|+. .+-|..||..++ |||++||+.||.+++
T Consensus 22 al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 22 ALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp HHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 5667763 245666677776 699999999999875
No 60
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.27 E-value=0.00025 Score=49.10 Aligned_cols=31 Identities=19% Similarity=0.409 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHhhc------------------CchhHHHHHHHHHHHH
Q 037952 44 NFTNEEDKLIIKLHR------------------RTDNEIKNCWNTHIKR 74 (148)
Q Consensus 44 ~wt~eEd~~l~~l~~------------------Rt~~~iknrw~~~~~~ 74 (148)
-||.|||..||.... |+.++|++||+.||+=
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 799999999998544 9999999999998764
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.01 E-value=0.00044 Score=43.93 Aligned_cols=32 Identities=6% Similarity=0.017 Sum_probs=27.6
Q ss_pred CCCCCCHHHHHHHHHhhc---------------CchhHHHHHHHHHH
Q 037952 41 KCGNFTNEEDKLIIKLHR---------------RTDNEIKNCWNTHI 72 (148)
Q Consensus 41 ~~~~wt~eEd~~l~~l~~---------------Rt~~~iknrw~~~~ 72 (148)
..++||+||++++++++. ||..+|.++|+...
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 457999999999999777 99999999997643
No 62
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.93 E-value=0.00015 Score=47.60 Aligned_cols=30 Identities=17% Similarity=0.405 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHhhc-----------------CchhHHHHHHHHHHH
Q 037952 44 NFTNEEDKLIIKLHR-----------------RTDNEIKNCWNTHIK 73 (148)
Q Consensus 44 ~wt~eEd~~l~~l~~-----------------Rt~~~iknrw~~~~~ 73 (148)
-||.|||..||.... ||.+||++||..+|+
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~Lnks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKLDKNPNQVSERFQQLMK 62 (70)
Confidence 699999999998554 999999999987765
No 63
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.68 E-value=0.0035 Score=43.45 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=38.7
Q ss_pred HHHhhhccCCCCCCCCCCHHHHHHHHHhhc--------------------CchhHHHHHHHHHHHHHHHh
Q 037952 29 RSRWINYLHPHLKCGNFTNEEDKLIIKLHR--------------------RTDNEIKNCWNTHIKRKLLN 78 (148)
Q Consensus 29 r~Rw~n~L~p~i~~~~wt~eEd~~l~~l~~--------------------Rt~~~iknrw~~~~~~~~~~ 78 (148)
.+-|..+|.. ..||.||-..|++|.. ||-.++|.||+...++.+..
T Consensus 21 ~eEY~~~L~~----~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 21 EQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp HHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3567777764 6899999999999887 89999999999988876655
No 64
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=96.68 E-value=0.00086 Score=53.47 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=28.9
Q ss_pred CCCCCHHHHHHHHHhhc---------------CchhHHHHHHHHHHHH
Q 037952 42 CGNFTNEEDKLIIKLHR---------------RTDNEIKNCWNTHIKR 74 (148)
Q Consensus 42 ~~~wt~eEd~~l~~l~~---------------Rt~~~iknrw~~~~~~ 74 (148)
.++||+||+.++++++. ||.++||++|+...|+
T Consensus 133 s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 56999999999988666 9999999999976665
No 65
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.59 E-value=0.0017 Score=41.19 Aligned_cols=17 Identities=24% Similarity=0.331 Sum_probs=15.1
Q ss_pred CCCCCHHHHHHHHHhhc
Q 037952 42 CGNFTNEEDKLIIKLHR 58 (148)
Q Consensus 42 ~~~wt~eEd~~l~~l~~ 58 (148)
+.+||+|||++|++.+.
T Consensus 2 R~~FT~edD~~L~~~v~ 18 (59)
T 1fex_A 2 RIAFTDADDVAILTYVK 18 (59)
T ss_dssp CCCCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 56899999999999875
No 66
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.91 E-value=0.0047 Score=39.06 Aligned_cols=32 Identities=6% Similarity=0.033 Sum_probs=24.5
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhcc
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYL 36 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L 36 (148)
++.+||. -|..||.+++ +|+..||+++|....
T Consensus 26 ~~~~~gk--~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 26 KFIQHPK--NFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp HHHHSTT--CHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred HHHHhCC--CHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 5677873 4666677777 799999999997643
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.82 E-value=0.0065 Score=40.26 Aligned_cols=30 Identities=10% Similarity=0.098 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHHHHhhc-------------------CchhHHHHHHHHH
Q 037952 42 CGNFTNEEDKLIIKLHR-------------------RTDNEIKNCWNTH 71 (148)
Q Consensus 42 ~~~wt~eEd~~l~~l~~-------------------Rt~~~iknrw~~~ 71 (148)
.++||++|+.+|.++.. ||..+|+.||..+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45899999999988554 9999999999765
No 68
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=95.80 E-value=0.014 Score=39.03 Aligned_cols=33 Identities=18% Similarity=0.483 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHhhc-----------------------------CchhHHHHHHHHHHHH
Q 037952 42 CGNFTNEEDKLIIKLHR-----------------------------RTDNEIKNCWNTHIKR 74 (148)
Q Consensus 42 ~~~wt~eEd~~l~~l~~-----------------------------Rt~~~iknrw~~~~~~ 74 (148)
...||.+|=.+||+++. ||..||+++|..|.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999776 9999999999985554
No 69
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=95.76 E-value=0.0059 Score=38.62 Aligned_cols=30 Identities=10% Similarity=0.171 Sum_probs=22.4
Q ss_pred hhhhhhHHhhhccCCCCChhHHHHHhhhccC
Q 037952 7 AQLIYVHVSINYSGLLRCGKSCRSRWINYLH 37 (148)
Q Consensus 7 ~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~ 37 (148)
|..+|-.++.+.+. .+|-.+||+||.++|+
T Consensus 29 Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 29 GNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp SSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred cHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 55667666552343 5999999999999986
No 70
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.63 E-value=0.0064 Score=40.29 Aligned_cols=36 Identities=8% Similarity=0.161 Sum_probs=26.5
Q ss_pred HHHHHhh--hhhhHHhhhccCCCCChhHHHHHhhhccCC
Q 037952 2 TIHKAAQ--LIYVHVSINYSGLLRCGKSCRSRWINYLHP 38 (148)
Q Consensus 2 ~i~k~~~--~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p 38 (148)
||.+|.. ..-|..||..+| +|+..+|+.||...++-
T Consensus 22 ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 22 AFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG 59 (73)
T ss_dssp HHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred HHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 4555543 245777788888 79999999999987643
No 71
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=95.45 E-value=0.0061 Score=40.08 Aligned_cols=34 Identities=9% Similarity=-0.100 Sum_probs=25.0
Q ss_pred HHHHHhh--hhhhHHhhhccCCCCChhHHHHHhhhccC
Q 037952 2 TIHKAAQ--LIYVHVSINYSGLLRCGKSCRSRWINYLH 37 (148)
Q Consensus 2 ~i~k~~~--~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~ 37 (148)
|+.+|+. ..-|..||..+| |+.+||+.||...+.
T Consensus 22 al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 22 SMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp HHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred HHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 5666653 244677777777 999999999987653
No 72
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=95.29 E-value=0.0088 Score=47.64 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=28.6
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhccC
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINYLH 37 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~ 37 (148)
|+.+||. .|..||+++| +||..||+..|.+|.+
T Consensus 147 Al~kYGK--DW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 147 AIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp HHHHHSS--CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred HHHHHCc--CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 6788884 5888899999 9999999999999874
No 73
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=93.42 E-value=0.028 Score=37.41 Aligned_cols=26 Identities=23% Similarity=0.608 Sum_probs=17.9
Q ss_pred hhhHHhhhc--cCCCCChhHHHHHhhhc
Q 037952 10 IYVHVSINY--SGLLRCGKSCRSRWINY 35 (148)
Q Consensus 10 ~~~~~~~~~--~g~~R~~kqCr~Rw~n~ 35 (148)
.|-.|+..+ .|..|++.||+.+|.|-
T Consensus 35 ~W~~Ia~~m~~~G~~rs~~qC~~K~~nL 62 (86)
T 2ebi_A 35 LWEQISSKMREKGFDRSPDMCTDKWRNL 62 (86)
T ss_dssp HHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344444433 34579999999999874
No 74
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=87.00 E-value=0.69 Score=38.06 Aligned_cols=34 Identities=32% Similarity=0.418 Sum_probs=28.8
Q ss_pred CCCCCCHHHHHHHHHhhc-------------------------------CchhHHHHHHHHHHHH
Q 037952 41 KCGNFTNEEDKLIIKLHR-------------------------------RTDNEIKNCWNTHIKR 74 (148)
Q Consensus 41 ~~~~wt~eEd~~l~~l~~-------------------------------Rt~~~iknrw~~~~~~ 74 (148)
+...||++||..||-+.. ||..+|..|+++||+-
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ 275 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL 275 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 556999999988887443 9999999999998874
No 75
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.90 E-value=1.2 Score=27.98 Aligned_cols=34 Identities=18% Similarity=0.113 Sum_probs=26.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhc----------------CchhHHHHHHHH
Q 037952 37 HPHLKCGNFTNEEDKLIIKLHR----------------RTDNEIKNCWNT 70 (148)
Q Consensus 37 ~p~i~~~~wt~eEd~~l~~l~~----------------Rt~~~iknrw~~ 70 (148)
.|.+...+||+||-.+-++.+. ||-.+|..+|+.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 5889999999999988766443 888888887764
No 76
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=85.67 E-value=0.48 Score=30.27 Aligned_cols=34 Identities=3% Similarity=0.096 Sum_probs=25.5
Q ss_pred HHHHHhhhhhhHHhhh--ccCCCCChhHHHHHhhhccC
Q 037952 2 TIHKAAQLIYVHVSIN--YSGLLRCGKSCRSRWINYLH 37 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~--~~g~~R~~kqCr~Rw~n~L~ 37 (148)
.|++||. .|-.|+.. ++. +|+.-+...||.+-.+
T Consensus 22 gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 22 GVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS 57 (62)
T ss_dssp HHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred HHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence 4789998 77777642 333 5999999999998543
No 77
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=85.24 E-value=0.34 Score=32.02 Aligned_cols=28 Identities=18% Similarity=0.170 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHhhc-------------------CchhHHHHHHH
Q 037952 42 CGNFTNEEDKLIIKLHR-------------------RTDNEIKNCWN 69 (148)
Q Consensus 42 ~~~wt~eEd~~l~~l~~-------------------Rt~~~iknrw~ 69 (148)
.++||.+|+.++..+.+ ||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 45899999999998766 88888887763
No 78
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=83.89 E-value=0.57 Score=40.86 Aligned_cols=31 Identities=16% Similarity=0.247 Sum_probs=26.5
Q ss_pred HHHHHhhhhhhHHhhhccCCCCChhHHHHHhhhc
Q 037952 2 TIHKAAQLIYVHVSINYSGLLRCGKSCRSRWINY 35 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~ 35 (148)
+|.+||. .|+.||+.+| +|+..|||.-|.+|
T Consensus 394 al~~yGk--dw~~IA~~Vg-TKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 394 AIRKYGR--DFQAISDVIG-NKSVVQVKNFFVNY 424 (482)
T ss_dssp HHHHHTT--CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred HHHHHCc--CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 6888885 6888899999 99999999988764
No 79
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=81.82 E-value=1.5 Score=36.97 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=29.8
Q ss_pred CCCCCCHHHHHHHHHhhc-------------------------------CchhHHHHHHHHHHHHHH
Q 037952 41 KCGNFTNEEDKLIIKLHR-------------------------------RTDNEIKNCWNTHIKRKL 76 (148)
Q Consensus 41 ~~~~wt~eEd~~l~~l~~-------------------------------Rt~~~iknrw~~~~~~~~ 76 (148)
+...||.+||..||.++. ||...|..|+++||+--.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~Ie 293 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLE 293 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHH
Confidence 455899999998887544 999999999999997533
No 80
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=81.45 E-value=0.47 Score=31.34 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=18.0
Q ss_pred hhHHhhhccCCCCChhHHHHHhh
Q 037952 11 YVHVSINYSGLLRCGKSCRSRWI 33 (148)
Q Consensus 11 ~~~~~~~~~g~~R~~kqCr~Rw~ 33 (148)
-|..||..+| ||+..+|+.+|.
T Consensus 45 RWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 45 RWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp SSTTTGGGSC-SSCHHHHHGGGC
T ss_pred HHHHHHHHcC-CCCHHHHHHHHH
Confidence 4667777887 799999999885
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=75.28 E-value=1.8 Score=37.73 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=25.7
Q ss_pred CCCCCHHHHHHHHHhhc---------------CchhHHHHHHHHHH
Q 037952 42 CGNFTNEEDKLIIKLHR---------------RTDNEIKNCWNTHI 72 (148)
Q Consensus 42 ~~~wt~eEd~~l~~l~~---------------Rt~~~iknrw~~~~ 72 (148)
...||.||-+++++.+. ||..|||++|....
T Consensus 380 ~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 56999999999977554 99999999997533
No 82
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.71 E-value=5.9 Score=24.61 Aligned_cols=29 Identities=0% Similarity=-0.163 Sum_probs=22.2
Q ss_pred HHHHHhhhhhhHHhhh-ccCCCCChhHHHHHhh
Q 037952 2 TIHKAAQLIYVHVSIN-YSGLLRCGKSCRSRWI 33 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~-~~g~~R~~kqCr~Rw~ 33 (148)
+|.+||. .|+.|++ +++ +|+..||.+=|-
T Consensus 23 ~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY 52 (63)
T 2yqk_A 23 GLRQYGK--NFFRIRKELLP-NKETGELITFYY 52 (63)
T ss_dssp HHHHTCS--CHHHHHHHSCT-TSCHHHHHHHHH
T ss_pred HHHHhCc--cHHHHHHHHcC-CCcHHHHHHHHh
Confidence 5677777 3677776 677 899999987664
No 83
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=56.92 E-value=12 Score=25.06 Aligned_cols=29 Identities=10% Similarity=0.067 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHHhhc---------------CchhHHHHHHHH
Q 037952 42 CGNFTNEEDKLIIKLHR---------------RTDNEIKNCWNT 70 (148)
Q Consensus 42 ~~~wt~eEd~~l~~l~~---------------Rt~~~iknrw~~ 70 (148)
...||+||-++..+.+. ||..+|-.+|+.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 46899999988777554 999999888864
No 84
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=56.01 E-value=17 Score=26.34 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=25.5
Q ss_pred HhhhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHHHHHHH
Q 037952 14 VSINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEEDKLIIK 55 (148)
Q Consensus 14 ~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd~~l~~ 55 (148)
.+|.++. |++..+||+-+ +|.. .||+||++.|-+
T Consensus 120 ~vA~~ik-gkt~eeir~~f------~I~n-d~t~eEe~~ir~ 153 (160)
T 2p1m_A 120 TVADMIK-GKTPEEIRTTF------NIKN-DFTPEEEEEVRR 153 (160)
T ss_dssp HHHHTTT-TCCHHHHHHHT------TCCC-CCCHHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHc------CCCC-CCCHHHHHHHHH
Confidence 4566666 69999999976 4544 599999988654
No 85
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=52.52 E-value=16 Score=27.27 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=12.9
Q ss_pred CCCCHHHHHHHHHhhc
Q 037952 43 GNFTNEEDKLIIKLHR 58 (148)
Q Consensus 43 ~~wt~eEd~~l~~l~~ 58 (148)
..||++||..||..+.
T Consensus 135 ~~W~~~~D~~LL~Gi~ 150 (211)
T 4b4c_A 135 IDWGKEDDSNLLIGIY 150 (211)
T ss_dssp SCCCHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHH
Confidence 3699999999988554
No 86
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=50.67 E-value=9.8 Score=24.13 Aligned_cols=29 Identities=7% Similarity=-0.014 Sum_probs=22.3
Q ss_pred HHHHHhhhhhhHHhhh-ccCCCCChhHHHHHhh
Q 037952 2 TIHKAAQLIYVHVSIN-YSGLLRCGKSCRSRWI 33 (148)
Q Consensus 2 ~i~k~~~~~~~~~~~~-~~g~~R~~kqCr~Rw~ 33 (148)
+|.+||. .|+.|++ +++ +|+..||.+=|-
T Consensus 22 ~l~~yGK--df~~I~~~~v~-~Kt~~~~v~fYY 51 (70)
T 2crg_A 22 ALEKYGK--DFNDIRQDFLP-WKSLTSIIEYYY 51 (70)
T ss_dssp HHHHTCS--CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred HHHHhCc--cHHHHHHHHcC-CCCHHHHHHHHH
Confidence 5677777 3677777 677 899999988664
No 87
>3s1b_A Mini-Z; VEGF, cystine knot, signaling protein; 2.90A {Homo sapiens}
Probab=47.49 E-value=9 Score=20.86 Aligned_cols=17 Identities=35% Similarity=0.675 Sum_probs=14.2
Q ss_pred hhHHHHHhhh-ccCCCCC
Q 037952 25 GKSCRSRWIN-YLHPHLK 41 (148)
Q Consensus 25 ~kqCr~Rw~n-~L~p~i~ 41 (148)
.|.|..||.. .|+|+++
T Consensus 2 nkecllrykeaaldpnln 19 (34)
T 3s1b_A 2 NKECLLRYKEAALDPNLN 19 (34)
T ss_dssp CHHHHHHHHHHHHCSSCC
T ss_pred cHHHHHHHHHhhcCCChh
Confidence 4789999995 5999986
No 88
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=42.13 E-value=29 Score=25.38 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=26.4
Q ss_pred HHhhhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHHHHHHH
Q 037952 13 HVSINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEEDKLIIK 55 (148)
Q Consensus 13 ~~~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd~~l~~ 55 (148)
..+|.++. |+++.+.|+-+ +|.. .||+||++.|.+
T Consensus 127 ~~vA~~ik-gktpeeiR~~f------~I~n-d~t~eEe~~ir~ 161 (169)
T 3v7d_A 127 KVVAEMIR-GRSPEEIRRTF------NIVN-DFTPEEEAAIRR 161 (169)
T ss_dssp HHHHHHHT-TCCHHHHHHHH------TCCC-CCCHHHHHHHHT
T ss_pred HHHHHHHc-CCCHHHHHHHc------CCCC-CCCHHHHHHHHH
Confidence 44566666 69999999977 4554 599999998754
No 89
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=36.43 E-value=32 Score=24.63 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=24.5
Q ss_pred hhhccCCCCChhHHHHHhhhccCCCCCCCCCCHHHHHHHHH
Q 037952 15 SINYSGLLRCGKSCRSRWINYLHPHLKCGNFTNEEDKLIIK 55 (148)
Q Consensus 15 ~~~~~g~~R~~kqCr~Rw~n~L~p~i~~~~wt~eEd~~l~~ 55 (148)
+|.++. |++..++|+.+ +|. ..||+||++.|.+
T Consensus 122 va~~i~-gkt~eeir~~f------~I~-~d~t~eEe~~ir~ 154 (159)
T 2ast_A 122 VANMIK-GKTPEEIRKTF------NIK-NDFTEEEEAQVRK 154 (159)
T ss_dssp HHHHHS-SCCHHHHHHHT------TCC-CCSCTTHHHHHHH
T ss_pred HHHHHc-CCCHHHHHHHc------CCC-CCCCHHHHHHHHH
Confidence 455555 59999999987 454 3599999987654
No 90
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=35.24 E-value=28 Score=21.95 Aligned_cols=26 Identities=23% Similarity=0.657 Sum_probs=21.7
Q ss_pred HHHHHHhhcCchhHHHHHHHHHHHHH
Q 037952 50 DKLIIKLHRRTDNEIKNCWNTHIKRK 75 (148)
Q Consensus 50 d~~l~~l~~Rt~~~iknrw~~~~~~~ 75 (148)
|+.++.++++.|...|..|..++.|-
T Consensus 20 deevme~hk~adermK~~w~~Ii~KY 45 (63)
T 2yfv_C 20 DEEVMERHKKADENMKRVWSQIIQKY 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578888899999999999877764
No 91
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=32.07 E-value=40 Score=22.67 Aligned_cols=34 Identities=9% Similarity=-0.036 Sum_probs=23.7
Q ss_pred HHhhhhhhHHhhhccCCCCC----hhHHHHHhhhccCC
Q 037952 5 KAAQLIYVHVSINYSGLLRC----GKSCRSRWINYLHP 38 (148)
Q Consensus 5 k~~~~~~~~~~~~~~g~~R~----~kqCr~Rw~n~L~p 38 (148)
+.....-|..|+..+|+..+ +.+.+.-|.+||.|
T Consensus 50 ~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 50 TITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 33444678888999997542 45677778888876
No 92
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=31.07 E-value=25 Score=24.23 Aligned_cols=32 Identities=9% Similarity=0.016 Sum_probs=24.2
Q ss_pred HhhhhhhHHhhhccCCCCChhHHHHHhhhccCC
Q 037952 6 AAQLIYVHVSINYSGLLRCGKSCRSRWINYLHP 38 (148)
Q Consensus 6 ~~~~~~~~~~~~~~g~~R~~kqCr~Rw~n~L~p 38 (148)
.....-|..|+..+|+.. +...|.-|..||.|
T Consensus 67 V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 67 VTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred ccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 334457888899999755 77888888888865
No 93
>3h8k_B Autocrine motility factor receptor, isoform 2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_C
Probab=29.85 E-value=31 Score=18.34 Aligned_cols=18 Identities=17% Similarity=0.475 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHhhcCchhHH
Q 037952 45 FTNEEDKLIIKLHRRTDNEI 64 (148)
Q Consensus 45 wt~eEd~~l~~l~~Rt~~~i 64 (148)
||++|.+.+|+ .|.+..|
T Consensus 1 ~s~~eRq~~Lq--~Rk~~mi 18 (28)
T 3h8k_B 1 WSADERQRMLV--QRKDELL 18 (28)
T ss_dssp CCHHHHHHHHH--HHHHHHH
T ss_pred CCHHHHHHHHH--HHHHHHH
Confidence 89999998864 2444444
No 94
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=29.63 E-value=29 Score=26.04 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=31.0
Q ss_pred HHHHHhhhccC-CCCCCCCCCHHHHHHHHHhhc---------CchhHHHHHHHHHHHHHH
Q 037952 27 SCRSRWINYLH-PHLKCGNFTNEEDKLIIKLHR---------RTDNEIKNCWNTHIKRKL 76 (148)
Q Consensus 27 qCr~Rw~n~L~-p~i~~~~wt~eEd~~l~~l~~---------Rt~~~iknrw~~~~~~~~ 76 (148)
+.-+.|..--. |.=..|-||+|+|+.|..--. -....|..||.-+....+
T Consensus 98 ~VL~~l~~GkgiP~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~erie~R~~FLe~~~~ 157 (168)
T 3cz6_A 98 YFLNMFKDNVNPPPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGTGRMEMRKRFFEKDLL 157 (168)
T ss_dssp HHHHHHHHTCSSCTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCHHHHHHHHHHHCC---
T ss_pred HHHHHHHhCCCCCCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCHHHHHHHHHHHHhccc
Confidence 56666665555 566789999999998875211 345566677655444433
No 95
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=24.57 E-value=41 Score=23.42 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=22.6
Q ss_pred hhhhhhHHhhhccCCCCC----hhHHHHHhhhccCC
Q 037952 7 AQLIYVHVSINYSGLLRC----GKSCRSRWINYLHP 38 (148)
Q Consensus 7 ~~~~~~~~~~~~~g~~R~----~kqCr~Rw~n~L~p 38 (148)
....-|..|+..+|+..+ +.+.|.-|.+||.|
T Consensus 71 ~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 71 INKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred CccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 344568888999997543 45677778888766
No 96
>3bm3_A PSPGI restriction endonuclease; endonuclease-DNA complex, restriction enzyme, PSPGI, base FL hydrolase-DNA complex; HET: DNA MSE CIT; 1.70A {Pyrococcus SP}
Probab=23.40 E-value=10 Score=30.52 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=9.7
Q ss_pred hHHHHHhhhccC
Q 037952 26 KSCRSRWINYLH 37 (148)
Q Consensus 26 kqCr~Rw~n~L~ 37 (148)
.-||+||...|.
T Consensus 161 TTcKDRWRQVl~ 172 (272)
T 3bm3_A 161 RKVRERWREAVG 172 (272)
T ss_dssp SSCTTTHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 359999999873
No 97
>2gb7_A R.ECL18KI; ECL18KI-DNA complex, type II restriction endonuclease, nucle flipping, base extrusion, hydrolase-DNA complex; HET: DNA; 1.70A {Enterobacter cloacae} PDB: 2fqz_A*
Probab=23.23 E-value=11 Score=30.91 Aligned_cols=11 Identities=27% Similarity=0.591 Sum_probs=9.4
Q ss_pred hHHHHHhhhcc
Q 037952 26 KSCRSRWINYL 36 (148)
Q Consensus 26 kqCr~Rw~n~L 36 (148)
.-||+||...|
T Consensus 183 TTlRERWRQVl 193 (305)
T 2gb7_A 183 TTLRERWQEVP 193 (305)
T ss_dssp SCCTTGGGHHH
T ss_pred ccHHHHHHHHH
Confidence 45999999987
No 98
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=22.84 E-value=49 Score=22.74 Aligned_cols=32 Identities=13% Similarity=-0.025 Sum_probs=19.5
Q ss_pred hhhhhhHHhhhccCCCCC---hhHHHHHhhhccCC
Q 037952 7 AQLIYVHVSINYSGLLRC---GKSCRSRWINYLHP 38 (148)
Q Consensus 7 ~~~~~~~~~~~~~g~~R~---~kqCr~Rw~n~L~p 38 (148)
....-|..|+..+|+..+ +.+-|.-|.+||.|
T Consensus 59 ~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 59 CKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred cccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 344578888989996543 34455556666543
No 99
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=21.75 E-value=62 Score=23.12 Aligned_cols=45 Identities=18% Similarity=0.095 Sum_probs=30.3
Q ss_pred HhhhhhhHHhhhccCCCCC----hhHHHHHhhhccCCC--CCCCCCCHHHH
Q 037952 6 AAQLIYVHVSINYSGLLRC----GKSCRSRWINYLHPH--LKCGNFTNEED 50 (148)
Q Consensus 6 ~~~~~~~~~~~~~~g~~R~----~kqCr~Rw~n~L~p~--i~~~~wt~eEd 50 (148)
.....-|..|+..+|+..+ +.+.+.-|..||-|= ..+|.=.++|=
T Consensus 82 V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~ 132 (145)
T 2kk0_A 82 VINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNEL 132 (145)
T ss_dssp HHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHH
T ss_pred hcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 3445678888999997543 567888899999883 44555444443
No 100
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=21.32 E-value=48 Score=23.02 Aligned_cols=17 Identities=0% Similarity=-0.353 Sum_probs=11.3
Q ss_pred hhhhhhHHhhhccCCCC
Q 037952 7 AQLIYVHVSINYSGLLR 23 (148)
Q Consensus 7 ~~~~~~~~~~~~~g~~R 23 (148)
....-|..|+..+|+..
T Consensus 70 ~~~~~W~~Va~~lg~~~ 86 (125)
T 2cxy_A 70 NKNKKWRELATNLNVGT 86 (125)
T ss_dssp HHHTCHHHHHHHTTSCS
T ss_pred cccCcHHHHHHHhCCCC
Confidence 34457777888888543
No 101
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=21.22 E-value=14 Score=31.53 Aligned_cols=12 Identities=33% Similarity=1.038 Sum_probs=9.8
Q ss_pred HHHHHhhhccCC
Q 037952 27 SCRSRWINYLHP 38 (148)
Q Consensus 27 qCr~Rw~n~L~p 38 (148)
-||+||.++|.-
T Consensus 326 TcKdRWRQVl~E 337 (404)
T 1na6_A 326 TCKDRWRQILNE 337 (404)
T ss_dssp SCTTCSGGGGC-
T ss_pred cHHHHHHHHHHH
Confidence 499999999963
No 102
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=21.10 E-value=48 Score=22.17 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=20.0
Q ss_pred hhhhhhHHhhhccCCCCC---hhHHHHHhhhccCC
Q 037952 7 AQLIYVHVSINYSGLLRC---GKSCRSRWINYLHP 38 (148)
Q Consensus 7 ~~~~~~~~~~~~~g~~R~---~kqCr~Rw~n~L~p 38 (148)
....-|..|+..+|+..+ +.+-+.-|.+||.|
T Consensus 63 ~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 63 TKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 344568888889996543 34555666666543
Done!