BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037953
(625 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 13/114 (11%)
Query: 118 GIFDQLTCLRALRIEGTDNWELEEDQTNEILNGV-EKLIHLRYLKL--NLVGDLPEKCCX 174
G+FD+LT L L + G ++ + NGV KL L YL L N + LP
Sbjct: 46 GVFDELTSLTQLYLGG--------NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD 97
Query: 175 XXXXXXXXXXXSSHFKRFPQGI-GKLINLRHLIFTEDLLEYMPKGI-EKLTSLR 226
++ + P G+ KL L+ L ++ L+ +P G+ ++LTSL+
Sbjct: 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
>pdb|1MT3|A Chain A, Crystal Structure Of The Tricorn Interacting Factor
Selenomethionine-f1
Length = 293
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 67/164 (40%), Gaps = 27/164 (16%)
Query: 218 GIEKLTSLRT--LSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVK 275
G+E+ +LR+ V G YG +++ +HL+G + GL +V VK
Sbjct: 82 GVEEAEALRSKLFGNEKVFLXGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLT--VK 139
Query: 276 NAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEAL---------WPPPN 326
E + + L +++D A+K++ + S EN EA+ WPP
Sbjct: 140 ----EXNRLIDELPAKYRD---AIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEV 192
Query: 327 LESLEIAGFR-------GRKMMLSTNWMASLNMLKKLRLLNCPT 363
L+SLE A R G T + ++ K+ + PT
Sbjct: 193 LKSLEYAERRNVYRIXNGPNEFTITGTIKDWDITDKISAIKIPT 236
>pdb|1XRM|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Ala-Phe
pdb|1XRN|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Ala
pdb|1XRO|A Chain A, Crystal Structure Of Active Site F1-Mutant E213q Soaked
With Peptide Phe-Leu
pdb|1XRP|A Chain A, Crystal Structure Of Active Site F1-mutant E213q Soaked
With Peptide Pro-leu-gly-gly
Length = 293
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 27/164 (16%)
Query: 218 GIEKLTSLRT--LSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVK 275
G+E+ +LR+ V G YG +++ +HL+G + GL +V +
Sbjct: 82 GVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEM 141
Query: 276 NAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEAL---------WPPPN 326
N +++ L +++D A+K++ + S EN EA+ WPP
Sbjct: 142 NRLIDE------LPAKYRD---AIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEV 192
Query: 327 LESLEIAGFR-------GRKMMLSTNWMASLNMLKKLRLLNCPT 363
L+SLE A R G T + ++ K+ + PT
Sbjct: 193 LKSLEYAERRNVYRIMNGPNQFTITGTIKDWDITDKISAIKIPT 236
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 73/178 (41%), Gaps = 40/178 (22%)
Query: 103 FYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGV-EKLIHLRYLK 161
Y N LPV G+FD LT L L +L +Q + + V ++L+HL+ L
Sbjct: 69 LYLGSNQLGALPV--GVFDSLTQLTVL--------DLGTNQLTVLPSAVFDRLVHLKELF 118
Query: 162 LNLVGDLPEKCCXXXXXXXXXXXXSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKG-IE 220
+ CC + P+GI +L +L HL ++ L+ +P G +
Sbjct: 119 M---------CC-------------NKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFD 156
Query: 221 KLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGN-VADVDEVKNA 277
+L+SL F G + E + LR+ S+ +R G V D D K A
Sbjct: 157 RLSSLTHAYLF-----GNPWDCECRDIMYLRNWVADHTSIAMRWDGKAVNDPDSAKCA 209
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Query: 139 LEEDQTNEILNGV-EKLIHLR--YLKLNLVGDLPEKCCXXXXXXXXXXXXSSHFKRFPQG 195
L ++Q ++ GV + LI+L+ YL N +G LP ++ P
Sbjct: 47 LHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSA 106
Query: 196 I-GKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLS 229
+ +L++L+ L + L +P+GIE+LT L L+
Sbjct: 107 VFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLA 141
>pdb|1XQV|A Chain A, Crystal Structure Of Inactive F1-Mutant G37a
Length = 293
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 27/164 (16%)
Query: 218 GIEKLTSLRT--LSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVK 275
G+E+ +LR+ V G YG +++ +HL+G + GL +V +
Sbjct: 82 GVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEM 141
Query: 276 NAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEAL---------WPPPN 326
N +++ L +++D A+K++ + S EN EA+ WPP
Sbjct: 142 NRLIDE------LPAKYRD---AIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEV 192
Query: 327 LESLEIAGFR-------GRKMMLSTNWMASLNMLKKLRLLNCPT 363
L+SLE A R G T + ++ K+ + PT
Sbjct: 193 LKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPT 236
>pdb|1XRL|A Chain A, Crystal Structure Of Active Site F1-Mutant Y205f Complex
With Inhibitor Pck
Length = 293
Score = 33.1 bits (74), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 27/164 (16%)
Query: 218 GIEKLTSLRT--LSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVK 275
G+E+ +LR+ V G YG +++ +HL+G + GL +V +
Sbjct: 82 GVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEM 141
Query: 276 NAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEAL---------WPPPN 326
N +++ L +++D A+K++ + S EN EA+ WPP
Sbjct: 142 NRLIDE------LPAKYRD---AIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEV 192
Query: 327 LESLEIAGFR-------GRKMMLSTNWMASLNMLKKLRLLNCPT 363
L+SLE A R G T + ++ K+ + PT
Sbjct: 193 LKSLEYAERRNVFRIMNGPNEFTITGTIKDWDITDKISAIKIPT 236
>pdb|1XRQ|A Chain A, Crystal Structure Of Active Site F1-Mutant E245q Soaked
With Peptide Phe-Leu
pdb|1XRR|A Chain A, Crystal Structure Of Active Site F1-mutant E245q Soaked
With Peptide Pro-pro
Length = 293
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 27/164 (16%)
Query: 218 GIEKLTSLRT--LSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVK 275
G+E+ +LR+ V G YG +++ +HL+G + GL +V +
Sbjct: 82 GVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEM 141
Query: 276 NAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEAL---------WPPPN 326
N +++ L +++D A+K++ + S EN EA+ WPP
Sbjct: 142 NRLIDE------LPAKYRD---AIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEV 192
Query: 327 LESLEIAGFR-------GRKMMLSTNWMASLNMLKKLRLLNCPT 363
L+SLE A R G T + ++ K+ + PT
Sbjct: 193 LKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPT 236
>pdb|1MTZ|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
pdb|1MU0|A Chain A, Crystal Structure Of The Tricorn Interacting Factor F1
Complex With Pck
Length = 293
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 27/164 (16%)
Query: 218 GIEKLTSLRT--LSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVK 275
G+E+ +LR+ V G YG +++ +HL+G + GL +V +
Sbjct: 82 GVEEAEALRSKLFGNEKVFLMGSSYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEM 141
Query: 276 NAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEAL---------WPPPN 326
N +++ L +++D A+K++ + S EN EA+ WPP
Sbjct: 142 NRLIDE------LPAKYRD---AIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEV 192
Query: 327 LESLEIAGFR-------GRKMMLSTNWMASLNMLKKLRLLNCPT 363
L+SLE A R G T + ++ K+ + PT
Sbjct: 193 LKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPT 236
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 148 LNGVEKLIHLRYLKL--NLVGDLPEKCCXXXXXXXXXXXXSSHFKRFPQGI-GKLINLRH 204
+ G++ L ++RYL L N + D+ + + P G+ KL NL+
Sbjct: 56 VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113
Query: 205 LIFTEDLLEYMPKGI-EKLTSLRTLS 229
L+ E+ L+ +P G+ +KLT+L L+
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYLN 139
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 148 LNGVEKLIHLRYLKL--NLVGDLPEKCCXXXXXXXXXXXXSSHFKRFPQGI-GKLINLRH 204
+ G++ L ++RYL L N + D+ + + P G+ KL NL+
Sbjct: 56 VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113
Query: 205 LIFTEDLLEYMPKGI-EKLTSLRTL 228
L+ E+ L+ +P G+ +KLT+L L
Sbjct: 114 LVLVENQLQSLPDGVFDKLTNLTYL 138
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
Query: 96 KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGV-EKL 154
KL +L Y N LP KG+FD+LT L L +L+ +Q + GV +KL
Sbjct: 131 KLTNLTYLYLYHNQLQSLP--KGVFDKLTNLTRL--------DLDNNQLQSLPEGVFDKL 180
Query: 155 IHLRYLKLN 163
L+ L LN
Sbjct: 181 TQLKQLSLN 189
>pdb|1XQW|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Phe-Leu
pdb|1XQX|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pck
pdb|1XQY|A Chain A, Crystal Structure Of F1-Mutant S105a Complex With Pro-Leu-
Gly-Gly
Length = 293
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 27/164 (16%)
Query: 218 GIEKLTSLRT--LSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVK 275
G+E+ +LR+ V G YG +++ +HL+G + GL +V +
Sbjct: 82 GVEEAEALRSKLFGNEKVFLMGSAYGGALALAYAVKYQDHLKGLIVSGGLSSVPLTVKEM 141
Query: 276 NAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEAL---------WPPPN 326
N +++ L +++D A+K++ + S EN EA+ WPP
Sbjct: 142 NRLIDE------LPAKYRD---AIKKYGSSGSYENPEYQEAVNYFYHQHLLRSEDWPPEV 192
Query: 327 LESLEIAGFR-------GRKMMLSTNWMASLNMLKKLRLLNCPT 363
L+SLE A R G T + ++ K+ + PT
Sbjct: 193 LKSLEYAERRNVYRIMNGPNEFTITGTIKDWDITDKISAIKIPT 236
>pdb|3GD0|A Chain A, Crystal Structure Of Laminaripentaose-Producing Beta-1,3-
Glucanase
pdb|3GD9|A Chain A, Crystal Structure Of Laminaripentaose-Producing Beta-1,3-
Glucanase In Complex With Laminaritetraose
Length = 367
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 439 ITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTL--RINRCRVLEEHFKKDRS 489
+T + ++ S++GCH+L P+ ++ +TL NR +L + DRS
Sbjct: 258 VTTFQKPDASSVFGCHRLLDAPNDQVRGPISRTLCAGFNRTTLLANPHQPDRS 310
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 12/135 (8%)
Query: 97 LRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIH 156
L++L + N LP+ G+FDQL L LR++ L + + + KL +
Sbjct: 84 LKNLETLWVTDNKLQALPI--GVFDQLVNLAELRLDRNQLKSLPP----RVFDSLTKLTY 137
Query: 157 LRYLKLNLVGDLPEKCCXXXXXXXXXXXXSSHFKRFPQG-IGKLINLRHLIFTEDLLEYM 215
L L N + LP+ ++ KR P+G KL L+ L + L+ +
Sbjct: 138 LS-LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196
Query: 216 PKG----IEKLTSLR 226
P+G +EKL L+
Sbjct: 197 PEGAFDSLEKLKMLQ 211
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 11/86 (12%)
Query: 303 PEAISNENAA-KHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNC 361
PE +++ +A+ +H+ + NL+SL + R + S +A+L LK L++ N
Sbjct: 167 PEPLASTDASGEHQGLV-------NLQSLRLEWTGIRSLPAS---IANLQNLKSLKIRNS 216
Query: 362 PTCEIMPPLGQLPSLEILLIKDMTSV 387
P + P + LP LE L ++ T++
Sbjct: 217 PLSALGPAIHHLPKLEELDLRGCTAL 242
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,015,504
Number of Sequences: 62578
Number of extensions: 727085
Number of successful extensions: 1474
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1458
Number of HSP's gapped (non-prelim): 25
length of query: 625
length of database: 14,973,337
effective HSP length: 105
effective length of query: 520
effective length of database: 8,402,647
effective search space: 4369376440
effective search space used: 4369376440
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)