Query 037953
Match_columns 625
No_of_seqs 553 out of 3409
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 06:04:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037953.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037953hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 8.5E-30 1.8E-34 299.9 22.0 409 10-484 471-910 (1153)
2 PLN00113 leucine-rich repeat r 100.0 2.2E-29 4.7E-34 296.0 16.9 403 70-502 116-557 (968)
3 KOG4658 Apoptotic ATPase [Sign 100.0 1.4E-29 3.1E-34 283.1 10.9 218 1-233 450-675 (889)
4 PLN00113 leucine-rich repeat r 100.0 1.1E-28 2.3E-33 290.2 14.9 406 70-504 138-583 (968)
5 KOG0444 Cytoskeletal regulator 99.9 2.2E-28 4.7E-33 248.1 -8.2 344 69-484 29-379 (1255)
6 KOG0472 Leucine-rich repeat pr 99.9 3.1E-27 6.7E-32 228.8 -5.1 240 71-362 67-308 (565)
7 PLN03210 Resistant to P. syrin 99.9 7.3E-24 1.6E-28 249.8 20.5 298 96-460 590-910 (1153)
8 KOG4194 Membrane glycoprotein 99.9 1.1E-25 2.3E-30 227.5 3.6 362 70-502 76-449 (873)
9 KOG0444 Cytoskeletal regulator 99.9 2.4E-26 5.3E-31 233.4 -3.0 356 71-500 6-370 (1255)
10 KOG4194 Membrane glycoprotein 99.9 1.3E-23 2.8E-28 212.5 2.9 341 69-476 99-448 (873)
11 KOG0472 Leucine-rich repeat pr 99.9 2.9E-24 6.3E-29 208.3 -3.3 356 72-484 45-474 (565)
12 KOG0618 Serine/threonine phosp 99.8 7.3E-21 1.6E-25 202.6 -5.6 122 74-210 23-147 (1081)
13 KOG0618 Serine/threonine phosp 99.7 4.7E-20 1E-24 196.5 -3.3 100 73-186 46-147 (1081)
14 KOG0617 Ras suppressor protein 99.6 9.3E-18 2E-22 145.1 -5.3 151 71-236 32-186 (264)
15 PRK15387 E3 ubiquitin-protein 99.6 6.8E-15 1.5E-19 162.2 12.1 117 326-481 343-459 (788)
16 KOG4658 Apoptotic ATPase [Sign 99.5 1.6E-14 3.5E-19 162.6 8.0 327 92-481 520-861 (889)
17 KOG0617 Ras suppressor protein 99.5 4.2E-16 9.2E-21 134.9 -4.1 143 66-223 50-196 (264)
18 PRK15370 E3 ubiquitin-protein 99.5 4.6E-14 9.9E-19 156.6 8.5 225 73-393 179-406 (754)
19 KOG4237 Extracellular matrix p 99.5 1.6E-14 3.5E-19 140.9 2.3 126 69-208 64-196 (498)
20 PRK15370 E3 ubiquitin-protein 99.4 1.4E-13 3E-18 152.9 7.6 223 70-385 197-426 (754)
21 PRK15387 E3 ubiquitin-protein 99.4 8.9E-13 1.9E-17 145.6 13.8 233 71-385 221-456 (788)
22 KOG4237 Extracellular matrix p 99.4 4.1E-14 8.9E-19 138.1 0.1 142 77-234 51-199 (498)
23 cd00116 LRR_RI Leucine-rich re 99.2 2.6E-12 5.7E-17 131.7 1.6 138 89-231 17-173 (319)
24 cd00116 LRR_RI Leucine-rich re 99.2 2.5E-12 5.5E-17 131.8 -0.1 123 100-234 3-148 (319)
25 KOG0532 Leucine-rich repeat (L 99.0 1.4E-11 3.1E-16 125.9 -4.1 143 76-234 54-200 (722)
26 KOG0532 Leucine-rich repeat (L 98.9 8.5E-11 1.8E-15 120.3 -2.8 148 74-237 77-248 (722)
27 PF14580 LRR_9: Leucine-rich r 98.8 2.3E-09 5E-14 97.5 3.6 127 92-235 16-152 (175)
28 PF14580 LRR_9: Leucine-rich r 98.8 3.4E-09 7.3E-14 96.5 3.2 120 71-207 18-147 (175)
29 KOG1259 Nischarin, modulator o 98.8 9.5E-10 2.1E-14 104.2 -0.5 130 70-216 282-415 (490)
30 KOG4341 F-box protein containi 98.7 1.2E-09 2.5E-14 108.3 -3.1 59 156-214 139-205 (483)
31 COG4886 Leucine-rich repeat (L 98.6 2E-08 4.4E-13 106.2 4.6 188 77-294 98-288 (394)
32 COG4886 Leucine-rich repeat (L 98.6 2.3E-08 5.1E-13 105.7 3.8 168 72-264 116-286 (394)
33 KOG1259 Nischarin, modulator o 98.5 1.3E-08 2.8E-13 96.6 -1.1 124 94-234 283-410 (490)
34 KOG4341 F-box protein containi 98.5 9.8E-09 2.1E-13 101.9 -2.6 150 317-482 286-441 (483)
35 KOG3207 Beta-tubulin folding c 98.5 4.1E-08 8.8E-13 98.1 1.4 69 315-385 212-282 (505)
36 KOG3207 Beta-tubulin folding c 98.4 3.8E-08 8.2E-13 98.3 -1.3 138 85-235 111-258 (505)
37 KOG2120 SCF ubiquitin ligase, 98.3 1.2E-08 2.7E-13 96.8 -6.3 34 259-294 238-271 (419)
38 PLN03150 hypothetical protein; 98.3 1.4E-06 3E-11 96.8 7.9 89 125-221 419-512 (623)
39 KOG1909 Ran GTPase-activating 98.3 2.4E-07 5.3E-12 90.2 1.4 98 274-385 204-309 (382)
40 PLN03150 hypothetical protein; 98.2 1.7E-06 3.7E-11 96.1 7.4 102 96-210 419-525 (623)
41 KOG1909 Ran GTPase-activating 98.1 5.5E-07 1.2E-11 87.8 0.4 256 71-363 29-310 (382)
42 PF13855 LRR_8: Leucine rich r 98.1 2.5E-06 5.3E-11 63.6 3.6 56 124-187 1-60 (61)
43 KOG0531 Protein phosphatase 1, 98.1 4.9E-07 1.1E-11 95.9 -1.5 125 93-234 70-197 (414)
44 PRK15386 type III secretion pr 98.1 1.6E-05 3.5E-10 81.4 9.2 143 315-477 42-187 (426)
45 KOG0531 Protein phosphatase 1, 98.0 5.4E-07 1.2E-11 95.6 -2.5 106 121-237 69-176 (414)
46 PF13855 LRR_8: Leucine rich r 98.0 5.1E-06 1.1E-10 61.9 3.2 54 96-162 2-56 (61)
47 KOG2120 SCF ubiquitin ligase, 97.9 7.3E-07 1.6E-11 85.0 -3.1 180 177-385 186-374 (419)
48 KOG4579 Leucine-rich repeat (L 97.9 1.6E-06 3.5E-11 73.2 -0.8 111 96-218 28-141 (177)
49 PF12799 LRR_4: Leucine Rich r 97.9 1.4E-05 3E-10 54.7 3.7 40 176-216 1-40 (44)
50 KOG1859 Leucine-rich repeat pr 97.8 9.1E-07 2E-11 93.7 -5.0 113 141-264 173-288 (1096)
51 KOG3665 ZYG-1-like serine/thre 97.8 2.4E-05 5.2E-10 87.0 5.0 129 71-213 121-263 (699)
52 KOG1859 Leucine-rich repeat pr 97.7 1.5E-06 3.3E-11 92.1 -4.8 127 70-213 162-292 (1096)
53 PF12799 LRR_4: Leucine Rich r 97.6 5.2E-05 1.1E-09 51.9 3.1 37 156-193 2-40 (44)
54 PRK15386 type III secretion pr 97.6 0.00015 3.3E-09 74.4 6.9 78 72-173 52-135 (426)
55 KOG4579 Leucine-rich repeat (L 97.5 2.4E-05 5.2E-10 66.3 0.4 88 94-195 52-141 (177)
56 KOG3665 ZYG-1-like serine/thre 97.3 0.00011 2.3E-09 81.9 2.9 76 154-231 147-228 (699)
57 KOG2982 Uncharacterized conser 97.0 0.00019 4.1E-09 68.9 0.7 57 151-211 93-157 (418)
58 KOG2982 Uncharacterized conser 96.9 0.00023 5E-09 68.3 0.2 66 323-390 197-265 (418)
59 COG5238 RNA1 Ran GTPase-activa 96.9 0.00093 2E-08 63.4 3.8 46 170-215 86-135 (388)
60 KOG1644 U2-associated snRNP A' 96.6 0.0017 3.7E-08 59.1 3.5 60 120-187 60-124 (233)
61 KOG1947 Leucine rich repeat pr 96.5 0.00039 8.5E-09 75.5 -1.9 33 175-207 187-221 (482)
62 KOG1644 U2-associated snRNP A' 96.3 0.0049 1.1E-07 56.2 4.4 100 124-233 42-150 (233)
63 COG5238 RNA1 Ran GTPase-activa 96.0 0.0069 1.5E-07 57.7 3.9 116 91-216 26-173 (388)
64 KOG2739 Leucine-rich acidic nu 96.0 0.0027 5.9E-08 60.3 1.1 83 151-234 61-154 (260)
65 KOG2123 Uncharacterized conser 95.8 0.0017 3.6E-08 62.0 -1.3 32 73-105 20-51 (388)
66 PF00560 LRR_1: Leucine Rich R 95.6 0.0047 1E-07 35.1 0.8 21 177-198 1-21 (22)
67 KOG1947 Leucine rich repeat pr 95.5 0.00092 2E-08 72.6 -4.6 140 322-478 185-332 (482)
68 KOG2123 Uncharacterized conser 95.4 0.002 4.3E-08 61.5 -2.0 99 93-207 17-124 (388)
69 KOG2739 Leucine-rich acidic nu 95.3 0.0084 1.8E-07 57.1 1.6 113 72-216 43-159 (260)
70 PF00560 LRR_1: Leucine Rich R 94.5 0.016 3.4E-07 32.9 0.8 22 125-154 1-22 (22)
71 PF13306 LRR_5: Leucine rich r 94.5 0.051 1.1E-06 47.0 4.3 100 90-207 7-110 (129)
72 PF13504 LRR_7: Leucine rich r 93.7 0.047 1E-06 28.7 1.6 17 176-193 1-17 (17)
73 KOG0693 Myo-inositol-1-phospha 93.3 0.038 8.2E-07 54.3 1.4 45 578-622 120-168 (512)
74 KOG3864 Uncharacterized conser 92.0 0.016 3.5E-07 53.0 -2.8 68 412-480 121-189 (221)
75 KOG0473 Leucine-rich repeat pr 91.5 0.01 2.3E-07 55.2 -4.6 84 90-187 37-122 (326)
76 PF13306 LRR_5: Leucine rich r 91.5 0.26 5.6E-06 42.5 4.2 113 72-203 12-129 (129)
77 KOG0473 Leucine-rich repeat pr 91.2 0.016 3.4E-07 54.1 -3.7 85 118-211 36-122 (326)
78 PF13504 LRR_7: Leucine rich r 88.9 0.19 4.2E-06 26.4 0.8 8 125-132 2-9 (17)
79 smart00370 LRR Leucine-rich re 88.5 0.35 7.6E-06 28.5 1.8 20 175-195 1-20 (26)
80 smart00369 LRR_TYP Leucine-ric 88.5 0.35 7.6E-06 28.5 1.8 20 175-195 1-20 (26)
81 KOG3864 Uncharacterized conser 87.5 0.094 2E-06 48.1 -1.6 61 441-501 123-185 (221)
82 smart00369 LRR_TYP Leucine-ric 84.6 0.58 1.3E-05 27.5 1.3 21 199-219 1-21 (26)
83 smart00370 LRR Leucine-rich re 84.6 0.58 1.3E-05 27.5 1.3 21 199-219 1-21 (26)
84 smart00367 LRR_CC Leucine-rich 76.6 1.3 2.7E-05 26.1 0.8 18 466-483 1-18 (26)
85 PF14162 YozD: YozD-like prote 73.7 3.4 7.5E-05 28.4 2.4 20 3-22 10-29 (57)
86 smart00364 LRR_BAC Leucine-ric 63.4 4.7 0.0001 23.8 1.2 17 177-194 3-19 (26)
87 smart00365 LRR_SD22 Leucine-ri 58.8 7.7 0.00017 23.0 1.6 12 176-187 2-13 (26)
88 KOG4308 LRR-containing protein 54.9 0.25 5.5E-06 52.9 -9.0 159 74-237 89-276 (478)
89 PF13516 LRR_6: Leucine Rich r 45.8 13 0.00027 21.2 1.2 10 123-132 1-10 (24)
90 PLN02438 inositol-3-phosphate 43.9 9 0.0002 40.5 0.5 44 580-623 122-169 (510)
91 smart00368 LRR_RI Leucine rich 43.0 17 0.00038 21.7 1.5 14 176-190 2-15 (28)
92 KOG4308 LRR-containing protein 30.6 3.3 7.2E-05 44.5 -5.3 156 71-236 114-303 (478)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.97 E-value=8.5e-30 Score=299.85 Aligned_cols=409 Identities=19% Similarity=0.230 Sum_probs=250.0
Q ss_pred HHHHHhhCCCCcccccCCCCCEeeEEeChHHHHHHHHHhhccc-------eEEeecCcccccccccCCCCceEEEEEEcC
Q 037953 10 YFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKEC-------AAVEVEGVEEPLLLINTCPEKLRHLMLVLG 82 (625)
Q Consensus 10 ~~~~L~~~sll~~~~~~~~g~~~~~~mHdlv~d~~~~i~~~e~-------~~~~~~~~~~~~~~~~~~~~~lr~L~l~~~ 82 (625)
-++.|+++||++... + .++|||++|+||+++++++. +.......... ........+++.+++..+
T Consensus 471 ~l~~L~~ksLi~~~~----~---~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~v-l~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 471 GLKNLVDKSLIHVRE----D---IVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDV-LEDNTGTKKVLGITLDID 542 (1153)
T ss_pred ChHHHHhcCCEEEcC----C---eEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHH-HHhCcccceeeEEEeccC
Confidence 488999999998743 2 47999999999999998763 11111100000 011223457788877665
Q ss_pred CCCcc---hhhhccCCcceEEEeeccc----CCccccCchhhHHHhcC-CceeEEEeecCCCccccccchhhhhcccccc
Q 037953 83 YEAPS---LVSIFNAIKLRSLILFYWI----PNLDAMLPVLKGIFDQL-TCLRALRIEGTDNWELEEDQTNEILNGVEKL 154 (625)
Q Consensus 83 ~~~~~---~~~~~~l~~Lr~L~L~~~~----~~~~~~lp~~~~~~~~l-~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L 154 (625)
...++ +..|.++++|+.|.+..+. ......+| ..|..+ .+||.|++. ++.+..+|..| ..
T Consensus 543 ~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp---~~~~~lp~~Lr~L~~~--------~~~l~~lP~~f-~~ 610 (1153)
T PLN03210 543 EIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLP---EGFDYLPPKLRLLRWD--------KYPLRCMPSNF-RP 610 (1153)
T ss_pred ccceeeecHHHHhcCccccEEEEecccccccccceeecC---cchhhcCcccEEEEec--------CCCCCCCCCcC-Cc
Confidence 55332 3567888899988886642 11122344 445554 458888887 77777777666 46
Q ss_pred cccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEe-cCcccccccccCCCccccccCCce
Q 037953 155 IHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIF-TEDLLEYMPKGIEKLTSLRTLSEF 231 (625)
Q Consensus 155 ~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l-~~~~l~~lp~~i~~L~~L~~L~~~ 231 (625)
.+|+.|++ .. +..+|..+..+++|+.|+|++|..++.+| .++.+++|++|++ +|..+..+|..++++++|+.|++.
T Consensus 611 ~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 611 ENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred cCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 77777777 33 77777777777777777777776667776 4677777777777 566677777777777777777766
Q ss_pred EecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcc--ccc--
Q 037953 232 VVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPE--AIS-- 307 (625)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~-- 307 (625)
.+.... .++..+ ++++|+ .|.+++|..+...+. ...+|+.|+++++.+.. ++.... ...
T Consensus 690 ~c~~L~----~Lp~~i----~l~sL~-~L~Lsgc~~L~~~p~-------~~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L 752 (1153)
T PLN03210 690 RCENLE----ILPTGI----NLKSLY-RLNLSGCSRLKSFPD-------ISTNISWLDLDETAIEE-FPSNLRLENLDEL 752 (1153)
T ss_pred CCCCcC----ccCCcC----CCCCCC-EEeCCCCCCcccccc-------ccCCcCeeecCCCcccc-ccccccccccccc
Confidence 544322 112211 345555 666666544333211 12456666666553210 000000 000
Q ss_pred ccchhhHHHH--------hhcCCCCCCCcEEEEeccCCCc-ccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcce
Q 037953 308 NENAAKHEAI--------CEALWPPPNLESLEIAGFRGRK-MMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEI 378 (625)
Q Consensus 308 ~~~~~~~~~~--------~~~l~~~~~L~~L~L~~~~~~~-~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~ 378 (625)
.........+ +.....+++|+.|++++|.... + |.+++++++|+.|++++|..++.+|....+++|+.
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~l---P~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~ 829 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVEL---PSSIQNLHKLEHLEIENCINLETLPTGINLESLES 829 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCcccc---ChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCE
Confidence 0000000000 0011123567777777664333 3 67777777777777777777777765446777777
Q ss_pred eeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCc
Q 037953 379 LLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKS 458 (625)
Q Consensus 379 L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~ 458 (625)
|++++|..++.+|. ..++|+.|+++++ .++.++.. +..+++|+.|++++|++++.
T Consensus 830 L~Ls~c~~L~~~p~---------------------~~~nL~~L~Ls~n-~i~~iP~s---i~~l~~L~~L~L~~C~~L~~ 884 (1153)
T PLN03210 830 LDLSGCSRLRTFPD---------------------ISTNISDLNLSRT-GIEEVPWW---IEKFSNLSFLDMNGCNNLQR 884 (1153)
T ss_pred EECCCCCccccccc---------------------cccccCEeECCCC-CCccChHH---HhcCCCCCEEECCCCCCcCc
Confidence 77777766655432 2356778887764 34444432 34788999999999999999
Q ss_pred CCcCCCCCCCCCEEEEecCcchhhcc
Q 037953 459 LPDQLLQSSTLKTLRINRCRVLEEHF 484 (625)
Q Consensus 459 lp~~~~~l~~L~~L~l~~c~~L~~~~ 484 (625)
+|..+..+++|+.+++++|+.++.++
T Consensus 885 l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 885 VSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred cCcccccccCCCeeecCCCccccccc
Confidence 88888888899999999998887654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=2.2e-29 Score=296.03 Aligned_cols=403 Identities=18% Similarity=0.171 Sum_probs=222.8
Q ss_pred CCCceEEEEEEcCCCC-cchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccch-hhh
Q 037953 70 CPEKLRHLMLVLGYEA-PSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQT-NEI 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~-~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l-~~l 147 (625)
...++|+|++++|.+. .+|. ..+++|++|++++|. +.+.+| ..++++++|++|+|+ +|.+ +.+
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~--~~~~~p---~~~~~l~~L~~L~L~--------~n~l~~~~ 180 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM--LSGEIP---NDIGSFSSLKVLDLG--------GNVLVGKI 180 (968)
T ss_pred cCCCCCEEECcCCccccccCc--cccCCCCEEECcCCc--ccccCC---hHHhcCCCCCEEECc--------cCcccccC
Confidence 4567888888888773 4443 357788888888864 445667 778888888888888 6663 466
Q ss_pred hcccccccccceecC--CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccc-cccccCCCcc
Q 037953 148 LNGVEKLIHLRYLKL--NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLE-YMPKGIEKLT 223 (625)
Q Consensus 148 p~~~~~L~~L~~L~L--~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~-~lp~~i~~L~ 223 (625)
|..++++++|++|+| |. .+.+|..++++++|++|++++|...+.+|..++++++|++|++++|.+. .+|..+++++
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 260 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK 260 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC
Confidence 777888888888888 44 5567777888888888888887744467777788888888888555543 5677777777
Q ss_pred ccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCc
Q 037953 224 SLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWP 303 (625)
Q Consensus 224 ~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 303 (625)
+|+.|++..+.... .....+.++++|+ .|+++++. ..+..+..+..+++|+.|++++|.+.+..+..-
T Consensus 261 ~L~~L~L~~n~l~~-------~~p~~l~~l~~L~-~L~Ls~n~----l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 261 NLQYLFLYQNKLSG-------PIPPSIFSLQKLI-SLDLSDNS----LSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred CCCEEECcCCeeec-------cCchhHhhccCcC-EEECcCCe----eccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 77777765544322 1122233344444 45554422 122233344555556666655554321111000
Q ss_pred ccccc------cchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-CCCCCCc
Q 037953 304 EAISN------ENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-LGQLPSL 376 (625)
Q Consensus 304 ~~~~~------~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L 376 (625)
..... ........++..+..+++|+.|++++|...... |.++..+++|+.|++++|...+.+|. ++.+++|
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~--p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L 406 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI--PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSL 406 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC--ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCC
Confidence 00000 000011233444455555666666555443211 55555555555555555444444442 5566667
Q ss_pred ceeeccccccceeeCccCCCCCCCCCCCCCCCC------CCCCCCCCCCeeeccCcccccccccC---------------
Q 037953 377 EILLIKDMTSVERVGDESLGIANGDHGAPSSSS------VNNIAFPKLKELEFSGLQEWEDWDFR--------------- 435 (625)
Q Consensus 377 ~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~------~~~~~l~~L~~L~L~~~~~l~~~~~~--------------- 435 (625)
+.|++++|...+.+|..+.....+..++++... .....+++|+.|++++|.-...++..
T Consensus 407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~ 486 (968)
T PLN00113 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQ 486 (968)
T ss_pred CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCc
Confidence 777776666444555544444444333332211 11234566666666655322111110
Q ss_pred -----CCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecC
Q 037953 436 -----KEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYER 502 (625)
Q Consensus 436 -----~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~ 502 (625)
+..+..+++|+.|++++|...+.+|..+.++++|++|++++|.....+| ..+..+..+..+.+..+
T Consensus 487 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N 557 (968)
T PLN00113 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIP-ASFSEMPVLSQLDLSQN 557 (968)
T ss_pred cCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCC-hhHhCcccCCEEECCCC
Confidence 0112345666666666654445566666666666666666665544444 44455555555555443
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.96 E-value=1.4e-29 Score=283.10 Aligned_cols=218 Identities=24% Similarity=0.294 Sum_probs=171.5
Q ss_pred CcHHHHHHHHHHHHhhCCCCcccccCCCCCEeeEEeChHHHHHHHHHhh-----ccceEEeecCcccccccccCCCCceE
Q 037953 1 MEMEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNK-----KECAAVEVEGVEEPLLLINTCPEKLR 75 (625)
Q Consensus 1 ~~~e~~g~~~~~~L~~~sll~~~~~~~~g~~~~~~mHdlv~d~~~~i~~-----~e~~~~~~~~~~~~~~~~~~~~~~lr 75 (625)
++++|+|++|+.+||+++|++..+.. |+..+|+|||+|||||.++|+ ++.+++..+..... -+....+..+|
T Consensus 450 ~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~-~~~~~~~~~~r 526 (889)
T KOG4658|consen 450 ETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSE-IPQVKSWNSVR 526 (889)
T ss_pred cchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccc-cccccchhhee
Confidence 46899999999999999999987644 778899999999999999999 67655554422221 12345678999
Q ss_pred EEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccc-hhhhhcccccc
Q 037953 76 HLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQ-TNEILNGVEKL 154 (625)
Q Consensus 76 ~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~-l~~lp~~~~~L 154 (625)
++++.+|.+..++.+ ..+++|++|.+.+|........+ ++|..++.||+|||+ +|. +..+|++++.|
T Consensus 527 r~s~~~~~~~~~~~~-~~~~~L~tLll~~n~~~l~~is~---~ff~~m~~LrVLDLs--------~~~~l~~LP~~I~~L 594 (889)
T KOG4658|consen 527 RMSLMNNKIEHIAGS-SENPKLRTLLLQRNSDWLLEISG---EFFRSLPLLRVLDLS--------GNSSLSKLPSSIGEL 594 (889)
T ss_pred EEEEeccchhhccCC-CCCCccceEEEeecchhhhhcCH---HHHhhCcceEEEECC--------CCCccCcCChHHhhh
Confidence 999999999777766 56779999999997532445555 789999999999999 777 88999999999
Q ss_pred cccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCCceE
Q 037953 155 IHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFV 232 (625)
Q Consensus 155 ~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~ 232 (625)
.+||||+| .+ +..+|.++++|+.|.+|++..+..+..+|..+..|++|++|.+.......-...++.+.+|++|....
T Consensus 595 i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 595 VHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLS 674 (889)
T ss_pred hhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhe
Confidence 99999999 66 99999999999999999999998777777667779999999994433211112344455555555444
Q ss_pred e
Q 037953 233 V 233 (625)
Q Consensus 233 ~ 233 (625)
+
T Consensus 675 ~ 675 (889)
T KOG4658|consen 675 I 675 (889)
T ss_pred e
Confidence 4
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=1.1e-28 Score=290.15 Aligned_cols=406 Identities=17% Similarity=0.153 Sum_probs=264.2
Q ss_pred CCCceEEEEEEcCCC-CcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccch-hhh
Q 037953 70 CPEKLRHLMLVLGYE-APSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQT-NEI 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l-~~l 147 (625)
...++++|++++|.+ +.+|..+..+++|++|++++|. +.+.+| ..+.++++|++|+|+ +|.+ ..+
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~--l~~~~p---~~~~~l~~L~~L~L~--------~n~l~~~~ 204 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV--LVGKIP---NSLTNLTSLEFLTLA--------SNQLVGQI 204 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc--ccccCC---hhhhhCcCCCeeecc--------CCCCcCcC
Confidence 356889999998887 4678888889999999999864 456677 788888899999988 6663 356
Q ss_pred hcccccccccceecC--CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCccc-ccccccCCCcc
Q 037953 148 LNGVEKLIHLRYLKL--NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLL-EYMPKGIEKLT 223 (625)
Q Consensus 148 p~~~~~L~~L~~L~L--~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l-~~lp~~i~~L~ 223 (625)
|..++++++|++|+| |. ...+|..++++++|++|++++|...+.+|..++++++|++|+++.|.+ ..+|..+++++
T Consensus 205 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 284 (968)
T PLN00113 205 PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ 284 (968)
T ss_pred ChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhcc
Confidence 777888888888888 44 456777788888888888888774446777777777777777755554 35566666677
Q ss_pred ccccCCceEecCCCCcCCCcccChh---------------------ccccccccccceEEeccCCCCChhHHHHhccCCC
Q 037953 224 SLRTLSEFVVASGGGRYGSEACKLE---------------------GLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKK 282 (625)
Q Consensus 224 ~L~~L~~~~~~~~~~~~~~~~~~l~---------------------~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l 282 (625)
+|+.|++..+.... ..+..+. .+..+++|+ .|.+.++. ..+..+..+..+
T Consensus 285 ~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~-~L~L~~n~----l~~~~p~~l~~~ 355 (968)
T PLN00113 285 KLISLDLSDNSLSG----EIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ-VLQLWSNK----FSGEIPKNLGKH 355 (968)
T ss_pred CcCEEECcCCeecc----CCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCC-EEECcCCC----CcCcCChHHhCC
Confidence 77776665443322 0111111 122233333 34433321 112233345556
Q ss_pred CCCCeEEEEEecccccccCCccccc------ccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEE
Q 037953 283 KNLVRLILRFKDIDKAVKRWPEAIS------NENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKL 356 (625)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L 356 (625)
++|+.|++++|.+.+..+....... -........++..+..+++|+.|++++|...... |..+..+++|+.|
T Consensus 356 ~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~--p~~~~~l~~L~~L 433 (968)
T PLN00113 356 NNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL--PSEFTKLPLVYFL 433 (968)
T ss_pred CCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC--ChhHhcCCCCCEE
Confidence 6666666666654332221100000 0001112234455666777888888777655321 7777788888888
Q ss_pred EEeCCCCCCCCCC-CCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCC------CCCCCCCCCCeeeccCcccc
Q 037953 357 RLLNCPTCEIMPP-LGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSS------VNNIAFPKLKELEFSGLQEW 429 (625)
Q Consensus 357 ~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~------~~~~~l~~L~~L~L~~~~~l 429 (625)
++++|...+.++. +..+++|+.|++++|...+.+|.. .+...+..++++.+. ..+..+++|+.|+++++.-.
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 512 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLS 512 (968)
T ss_pred ECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcce
Confidence 8888765555553 567888999999888766666643 233444444443322 23556788999999887533
Q ss_pred cccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCCC
Q 037953 430 EDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERGP 504 (625)
Q Consensus 430 ~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~~ 504 (625)
..++.. +..+++|+.|++++|...+.+|..+..+++|++|++++|.....+| ..+..+..+..+.+.++..
T Consensus 513 ~~~p~~---~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 513 GEIPDE---LSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP-KNLGNVESLVQVNISHNHL 583 (968)
T ss_pred eeCChH---HcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC-hhHhcCcccCEEeccCCcc
Confidence 333322 4478999999999987777899999999999999999998877777 5666677777777765543
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=2.2e-28 Score=248.13 Aligned_cols=344 Identities=19% Similarity=0.195 Sum_probs=250.1
Q ss_pred CCCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh--h
Q 037953 69 TCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN--E 146 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~--~ 146 (625)
.....++.|.|...++..+|+.+..+.+|+.|.+++|+ ... +- ..++.++.||.+++. +|++. .
T Consensus 29 ~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~--L~~-vh---GELs~Lp~LRsv~~R--------~N~LKnsG 94 (1255)
T KOG0444|consen 29 EQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ--LIS-VH---GELSDLPRLRSVIVR--------DNNLKNSG 94 (1255)
T ss_pred HHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh--hHh-hh---hhhccchhhHHHhhh--------ccccccCC
Confidence 33456777777777777888888888888888887765 222 22 456777788888887 77643 5
Q ss_pred hhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccccccCCCcc
Q 037953 147 ILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPKGIEKLT 223 (625)
Q Consensus 147 lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~~i~~L~ 223 (625)
+|..+..+..|.+||| .+ ++..|..+.+-+++-+|+|++|+ +.++|.. +.+|+.|-.||+++|.++.+|+.+.+|.
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~ 173 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLS 173 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHh
Confidence 6777888888888888 33 88888888888888888888887 8888776 5678888888888888888888888888
Q ss_pred ccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCc
Q 037953 224 SLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWP 303 (625)
Q Consensus 224 ~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 303 (625)
.|++|.+++++... ..+..++.++.|. .|.+++... ....++..+..+.+|..++++.|+
T Consensus 174 ~LqtL~Ls~NPL~h-------fQLrQLPsmtsL~-vLhms~TqR---Tl~N~Ptsld~l~NL~dvDlS~N~--------- 233 (1255)
T KOG0444|consen 174 MLQTLKLSNNPLNH-------FQLRQLPSMTSLS-VLHMSNTQR---TLDNIPTSLDDLHNLRDVDLSENN--------- 233 (1255)
T ss_pred hhhhhhcCCChhhH-------HHHhcCccchhhh-hhhcccccc---hhhcCCCchhhhhhhhhccccccC---------
Confidence 88888877665443 4566667777776 676665432 233456677788888888888874
Q ss_pred ccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-CCCCCCcceeecc
Q 037953 304 EAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-LGQLPSLEILLIK 382 (625)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~ 382 (625)
...+|+.+..+++|+.|+|++|...++ .-..+...+|+.|+++. +.++.+|. +.+++.|+.|.+.
T Consensus 234 ----------Lp~vPecly~l~~LrrLNLS~N~iteL---~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 234 ----------LPIVPECLYKLRNLRRLNLSGNKITEL---NMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYAN 299 (1255)
T ss_pred ----------CCcchHHHhhhhhhheeccCcCceeee---eccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhc
Confidence 345677777888888888888887776 55555667888888888 56777774 8888888888887
Q ss_pred ccc-cceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCc
Q 037953 383 DMT-SVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPD 461 (625)
Q Consensus 383 ~~~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 461 (625)
++. ..+.||.+ ++.+.+|+.+...+. .++-++ .+++.+++|+.|.++. +.+-.+|.
T Consensus 300 ~NkL~FeGiPSG------------------IGKL~~Levf~aanN-~LElVP---EglcRC~kL~kL~L~~-NrLiTLPe 356 (1255)
T KOG0444|consen 300 NNKLTFEGIPSG------------------IGKLIQLEVFHAANN-KLELVP---EGLCRCVKLQKLKLDH-NRLITLPE 356 (1255)
T ss_pred cCcccccCCccc------------------hhhhhhhHHHHhhcc-ccccCc---hhhhhhHHHHHhcccc-cceeechh
Confidence 654 11223322 677778888777653 333333 3355788999999986 67888999
Q ss_pred CCCCCCCCCEEEEecCcchhhcc
Q 037953 462 QLLQSSTLKTLRINRCRVLEEHF 484 (625)
Q Consensus 462 ~~~~l~~L~~L~l~~c~~L~~~~ 484 (625)
.+.-++.|+.||+..+|++.--|
T Consensus 357 aIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 357 AIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred hhhhcCCcceeeccCCcCccCCC
Confidence 88888999999999999876444
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=3.1e-27 Score=228.80 Aligned_cols=240 Identities=24% Similarity=0.247 Sum_probs=189.3
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
...+..+.+++|...++|++++++..+..|+++.|+ ...+| ..+.++..|+.|+.+ +|.+.++|++
T Consensus 67 L~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~---ls~lp---~~i~s~~~l~~l~~s--------~n~~~el~~~ 132 (565)
T KOG0472|consen 67 LACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK---LSELP---EQIGSLISLVKLDCS--------SNELKELPDS 132 (565)
T ss_pred ccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch---Hhhcc---HHHhhhhhhhhhhcc--------ccceeecCch
Confidence 456788889999998999999999999999999976 66778 889999999999999 9999999999
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccC
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTL 228 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 228 (625)
++.+..|..|+. ++ +.++|++++++.+|..|++.+|. ++++|+..-+++.|++||...|.++.+|+.++.+.+|..|
T Consensus 133 i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~L 211 (565)
T KOG0472|consen 133 IGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELL 211 (565)
T ss_pred HHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHH
Confidence 999999999999 55 99999999999999999999998 8899888777999999999889999999999999999988
Q ss_pred CceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccc
Q 037953 229 SEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISN 308 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 308 (625)
++..+.... +.++++...|. .+++.. +.+.-.......++.++..|+++.|
T Consensus 212 yL~~Nki~~---------lPef~gcs~L~-Elh~g~----N~i~~lpae~~~~L~~l~vLDLRdN--------------- 262 (565)
T KOG0472|consen 212 YLRRNKIRF---------LPEFPGCSLLK-ELHVGE----NQIEMLPAEHLKHLNSLLVLDLRDN--------------- 262 (565)
T ss_pred Hhhhccccc---------CCCCCccHHHH-HHHhcc----cHHHhhHHHHhcccccceeeecccc---------------
Confidence 877665443 22333333343 444432 2222222333557888888888877
Q ss_pred cchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCC
Q 037953 309 ENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCP 362 (625)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~ 362 (625)
...++|+.+..+.+|.+|++++|..... |..++++ +|+.|.+.|++
T Consensus 263 ----klke~Pde~clLrsL~rLDlSNN~is~L---p~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 263 ----KLKEVPDEICLLRSLERLDLSNNDISSL---PYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ----ccccCchHHHHhhhhhhhcccCCccccC---Ccccccc-eeeehhhcCCc
Confidence 3466777777777888888888877776 7777777 77777777654
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=7.3e-24 Score=249.80 Aligned_cols=298 Identities=21% Similarity=0.270 Sum_probs=178.5
Q ss_pred cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC--CC-CCCCchhh
Q 037953 96 KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL--NL-VGDLPEKC 172 (625)
Q Consensus 96 ~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L--~~-l~~lP~~i 172 (625)
+||.|.+.++. ...+| ..| ...+|+.|+++ ++.+..+|..+..+++|++|+| +. ++.+| .+
T Consensus 590 ~Lr~L~~~~~~---l~~lP---~~f-~~~~L~~L~L~--------~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~l 653 (1153)
T PLN03210 590 KLRLLRWDKYP---LRCMP---SNF-RPENLVKLQMQ--------GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DL 653 (1153)
T ss_pred ccEEEEecCCC---CCCCC---CcC-CccCCcEEECc--------CccccccccccccCCCCCEEECCCCCCcCcCC-cc
Confidence 35555555543 23333 333 34555555555 5555555555555555555555 33 55554 35
Q ss_pred cCCCCCceEeecCCCCCCccccccccccccceEEe-cCcccccccccCCCccccccCCceEecCCCC-------------
Q 037953 173 CELLNLQTLELENSSHFKRFPQGIGKLINLRHLIF-TEDLLEYMPKGIEKLTSLRTLSEFVVASGGG------------- 238 (625)
Q Consensus 173 ~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l-~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~------------- 238 (625)
+.+++|++|+|++|..+..+|..++++++|+.|++ .|+.++.+|..+ ++++|+.|.+.++.....
T Consensus 654 s~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L 732 (1153)
T PLN03210 654 SMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDL 732 (1153)
T ss_pred ccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeec
Confidence 55555555555555555555555555555555555 445555555444 445555544433321110
Q ss_pred ---cCCCcccChhccccccccccceEEeccCCCC---ChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchh
Q 037953 239 ---RYGSEACKLEGLRHLNHLRGSLKVRGLGNVA---DVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAA 312 (625)
Q Consensus 239 ---~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~---~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 312 (625)
.+...+..+ .+++|. .|.+..+.... ......+......++|+.|+++.|.
T Consensus 733 ~~n~i~~lP~~~----~l~~L~-~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~------------------ 789 (1153)
T PLN03210 733 DETAIEEFPSNL----RLENLD-ELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP------------------ 789 (1153)
T ss_pred CCCccccccccc----cccccc-cccccccchhhccccccccchhhhhccccchheeCCCCC------------------
Confidence 000011111 122333 33333221100 0000000112234578888887663
Q ss_pred hHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceeeCc
Q 037953 313 KHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGD 392 (625)
Q Consensus 313 ~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~ 392 (625)
....+|..++.+++|+.|++++|...... |..+ ++++|+.|++++|..+..+|.. .++|+.|+|+++. ++.+|.
T Consensus 790 ~l~~lP~si~~L~~L~~L~Ls~C~~L~~L--P~~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~-i~~iP~ 863 (1153)
T PLN03210 790 SLVELPSSIQNLHKLEHLEIENCINLETL--PTGI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTG-IEEVPW 863 (1153)
T ss_pred CccccChhhhCCCCCCEEECCCCCCcCee--CCCC-CccccCEEECCCCCcccccccc--ccccCEeECCCCC-CccChH
Confidence 23557778899999999999998654431 7665 7899999999999998888754 4789999999864 777775
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCC
Q 037953 393 ESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLP 460 (625)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 460 (625)
. +..+++|+.|++++|+++..++.... .+++|+.|++++|..++.++
T Consensus 864 s------------------i~~l~~L~~L~L~~C~~L~~l~~~~~---~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 864 W------------------IEKFSNLSFLDMNGCNNLQRVSLNIS---KLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred H------------------HhcCCCCCEEECCCCCCcCccCcccc---cccCCCeeecCCCccccccc
Confidence 4 67889999999999999998876544 78999999999999998764
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.91 E-value=1.1e-25 Score=227.46 Aligned_cols=362 Identities=16% Similarity=0.246 Sum_probs=248.2
Q ss_pred CCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.+...+.|++++|.+..+ +..|.++++|+.+.+.+|. ...+| .+.....+|+.|+|. +|.|.++.
T Consensus 76 lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~---Lt~IP---~f~~~sghl~~L~L~--------~N~I~sv~ 141 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE---LTRIP---RFGHESGHLEKLDLR--------HNLISSVT 141 (873)
T ss_pred CccceeeeeccccccccCcHHHHhcCCcceeeeeccch---hhhcc---cccccccceeEEeee--------cccccccc
Confidence 355667788888777444 4567778888888887765 55566 655666678888888 77777663
Q ss_pred -cccccccccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccccccc-CCCc
Q 037953 149 -NGVEKLIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPKG-IEKL 222 (625)
Q Consensus 149 -~~~~~L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~~-i~~L 222 (625)
+++..++.||.||| .+ +..+|. ++..-.++++|+|++|. ++.+-.+ |..+.+|..|.++.|.++.+|.. +.+|
T Consensus 142 se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L 220 (873)
T KOG4194|consen 142 SEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRL 220 (873)
T ss_pred HHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCcccccCHHHhhhc
Confidence 34777788888888 33 777764 35555778888888887 7776544 77777888888888888888765 4557
Q ss_pred cccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCC
Q 037953 223 TSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRW 302 (625)
Q Consensus 223 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 302 (625)
+.|+.|++-.+...-. ....+..|.+|++| .+.. +++...-...|..+.++++|++..|.++
T Consensus 221 ~~L~~LdLnrN~iriv----e~ltFqgL~Sl~nl----klqr----N~I~kL~DG~Fy~l~kme~l~L~~N~l~------ 282 (873)
T KOG4194|consen 221 PKLESLDLNRNRIRIV----EGLTFQGLPSLQNL----KLQR----NDISKLDDGAFYGLEKMEHLNLETNRLQ------ 282 (873)
T ss_pred chhhhhhccccceeee----hhhhhcCchhhhhh----hhhh----cCcccccCcceeeecccceeecccchhh------
Confidence 7888777655443320 02333444444443 2322 2222222345777888888888888532
Q ss_pred cccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC--CCCCCCCcceee
Q 037953 303 PEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP--PLGQLPSLEILL 380 (625)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~ 380 (625)
..--.++..++.|+.|+++.|....+. ++....+++|+.|+|++ +.++.++ .+..+..|+.|.
T Consensus 283 ------------~vn~g~lfgLt~L~~L~lS~NaI~rih--~d~WsftqkL~~LdLs~-N~i~~l~~~sf~~L~~Le~Ln 347 (873)
T KOG4194|consen 283 ------------AVNEGWLFGLTSLEQLDLSYNAIQRIH--IDSWSFTQKLKELDLSS-NRITRLDEGSFRVLSQLEELN 347 (873)
T ss_pred ------------hhhcccccccchhhhhccchhhhheee--cchhhhcccceeEeccc-cccccCChhHHHHHHHhhhhc
Confidence 222235667888999999988877764 66677889999999988 5566666 377788999999
Q ss_pred ccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCC--cccCCCccEEEEecCCCCCc
Q 037953 381 IKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKED--ITIMPQINSLSIYGCHKLKS 458 (625)
Q Consensus 381 L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~--~~~l~~L~~L~l~~c~~l~~ 458 (625)
|++|. +.++.++. +.++.+|++|+|++.. -.|.+.+.. +..+++|++|.+.+ ++++.
T Consensus 348 Ls~Ns-i~~l~e~a-----------------f~~lssL~~LdLr~N~--ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~ 406 (873)
T KOG4194|consen 348 LSHNS-IDHLAEGA-----------------FVGLSSLHKLDLRSNE--LSWCIEDAAVAFNGLPSLRKLRLTG-NQLKS 406 (873)
T ss_pred ccccc-hHHHHhhH-----------------HHHhhhhhhhcCcCCe--EEEEEecchhhhccchhhhheeecC-ceeee
Confidence 99865 76665443 5677899999998753 233333322 45699999999999 68999
Q ss_pred CCcC-CCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecC
Q 037953 459 LPDQ-LLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYER 502 (625)
Q Consensus 459 lp~~-~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~ 502 (625)
||.. +..+++|++|++.+++...-.+ ..+..+ +++++.+...
T Consensus 407 I~krAfsgl~~LE~LdL~~NaiaSIq~-nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 407 IPKRAFSGLEALEHLDLGDNAIASIQP-NAFEPM-ELKELVMNSS 449 (873)
T ss_pred cchhhhccCcccceecCCCCcceeecc-cccccc-hhhhhhhccc
Confidence 9864 4558999999999997644334 556666 7777766543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.91 E-value=2.4e-26 Score=233.36 Aligned_cols=356 Identities=17% Similarity=0.163 Sum_probs=286.0
Q ss_pred CCceEEEEEEcCCC--CcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 71 PEKLRHLMLVLGYE--APSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 71 ~~~lr~L~l~~~~~--~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.+-+|-+++++|.+ +.+|.....++.++.|.|...+ ...+| +.++.+.+|+.|.++ +|++..+-
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~---L~~vP---eEL~~lqkLEHLs~~--------HN~L~~vh 71 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTK---LEQVP---EELSRLQKLEHLSMA--------HNQLISVH 71 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEechhh---hhhCh---HHHHHHhhhhhhhhh--------hhhhHhhh
Confidence 45688999999998 6889999999999999999966 67788 999999999999999 99999998
Q ss_pred cccccccccceecC--CC--CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCccccccccc-CCCcc
Q 037953 149 NGVEKLIHLRYLKL--NL--VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKG-IEKLT 223 (625)
Q Consensus 149 ~~~~~L~~L~~L~L--~~--l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~ 223 (625)
..+..|+.||.+++ |+ -..+|..|.+|..|.+|||++|. ++++|..+..-+++-.|++++|+++.||.. +.+|+
T Consensus 72 GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLt 150 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLT 150 (1255)
T ss_pred hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccccCCchHHHhhH
Confidence 88999999999999 66 67899999999999999999999 999999999999999999999999999976 56788
Q ss_pred ccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCc
Q 037953 224 SLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWP 303 (625)
Q Consensus 224 ~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 303 (625)
.|-.|+++++.... ++..+..+.+|+ .|.+++ +.........+..++.|+.|.+++..
T Consensus 151 DLLfLDLS~NrLe~-----LPPQ~RRL~~Lq----tL~Ls~----NPL~hfQLrQLPsmtsL~vLhms~Tq--------- 208 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLEM-----LPPQIRRLSMLQ----TLKLSN----NPLNHFQLRQLPSMTSLSVLHMSNTQ--------- 208 (1255)
T ss_pred hHhhhccccchhhh-----cCHHHHHHhhhh----hhhcCC----ChhhHHHHhcCccchhhhhhhccccc---------
Confidence 88888887766544 444444454444 555555 33333334456677788888888653
Q ss_pred ccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeecc
Q 037953 304 EAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIK 382 (625)
Q Consensus 304 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~ 382 (625)
.....+|.++..+.+|..++++.|..... |..+-.+++|+.|+|++ +.++.+. ..+...+|++|+++
T Consensus 209 --------RTl~N~Ptsld~l~NL~dvDlS~N~Lp~v---Pecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlS 276 (1255)
T KOG0444|consen 209 --------RTLDNIPTSLDDLHNLRDVDLSENNLPIV---PECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLS 276 (1255)
T ss_pred --------chhhcCCCchhhhhhhhhccccccCCCcc---hHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhccc
Confidence 13466788888999999999999988887 99999999999999999 4566665 36678899999999
Q ss_pred ccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcc-cccccccCCCCcccCCCccEEEEecCCCCCcCCc
Q 037953 383 DMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQ-EWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPD 461 (625)
Q Consensus 383 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~ 461 (625)
++. ++.+|.. +..+++|+.|.+.+.. ..+.++ .+++.+.+|+.+...+ +++.-+|+
T Consensus 277 rNQ-Lt~LP~a------------------vcKL~kL~kLy~n~NkL~FeGiP---SGIGKL~~Levf~aan-N~LElVPE 333 (1255)
T KOG0444|consen 277 RNQ-LTVLPDA------------------VCKLTKLTKLYANNNKLTFEGIP---SGIGKLIQLEVFHAAN-NKLELVPE 333 (1255)
T ss_pred cch-hccchHH------------------HhhhHHHHHHHhccCcccccCCc---cchhhhhhhHHHHhhc-cccccCch
Confidence 966 8888875 5678999999887653 234443 2356899999999998 68999999
Q ss_pred CCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEe
Q 037953 462 QLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIY 500 (625)
Q Consensus 462 ~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~ 500 (625)
++..+..|+.|.++.+.. ...| +.+.-+..+..+.+.
T Consensus 334 glcRC~kL~kL~L~~NrL-iTLP-eaIHlL~~l~vLDlr 370 (1255)
T KOG0444|consen 334 GLCRCVKLQKLKLDHNRL-ITLP-EAIHLLPDLKVLDLR 370 (1255)
T ss_pred hhhhhHHHHHhcccccce-eech-hhhhhcCCcceeecc
Confidence 999999999999977754 4455 444444444444443
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.3e-23 Score=212.52 Aligned_cols=341 Identities=19% Similarity=0.221 Sum_probs=259.9
Q ss_pred CCCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 69 TCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
...++++.+++..|.++.+|.......+|+.|+|.+|. +...-. +.++.++.||+|||| .|.+.++|
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~--I~sv~s---e~L~~l~alrslDLS--------rN~is~i~ 165 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL--ISSVTS---EELSALPALRSLDLS--------RNLISEIP 165 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeeccc--cccccH---HHHHhHhhhhhhhhh--------hchhhccc
Confidence 45679999999999999999877778889999999976 344334 789999999999999 99999997
Q ss_pred c-ccccccccceecC-CC-CCCCc-hhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccccc-ccCCCc
Q 037953 149 N-GVEKLIHLRYLKL-NL-VGDLP-EKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMP-KGIEKL 222 (625)
Q Consensus 149 ~-~~~~L~~L~~L~L-~~-l~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp-~~i~~L 222 (625)
. +|..-.++++|+| ++ ++.+- ..+..+.+|-+|.|+.|+ ++.+|.. |.+|++|+.|++..|.++.+- -.+..|
T Consensus 166 ~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL 244 (873)
T KOG4194|consen 166 KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGL 244 (873)
T ss_pred CCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeeehhhhhcCc
Confidence 5 4888889999999 55 88875 458889999999999999 9999977 566999999999999887762 347788
Q ss_pred cccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCC
Q 037953 223 TSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRW 302 (625)
Q Consensus 223 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 302 (625)
.+|+.|.+..+.... -....+-.+.++.+| .|..+.+ .......+-+++.|+.|++++|.++
T Consensus 245 ~Sl~nlklqrN~I~k----L~DG~Fy~l~kme~l--~L~~N~l------~~vn~g~lfgLt~L~~L~lS~NaI~------ 306 (873)
T KOG4194|consen 245 PSLQNLKLQRNDISK----LDDGAFYGLEKMEHL--NLETNRL------QAVNEGWLFGLTSLEQLDLSYNAIQ------ 306 (873)
T ss_pred hhhhhhhhhhcCccc----ccCcceeeeccccee--ecccchh------hhhhcccccccchhhhhccchhhhh------
Confidence 999998876655443 113445556666655 3554443 3344457889999999999999643
Q ss_pred cccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC--CCCCCCCcceee
Q 037953 303 PEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP--PLGQLPSLEILL 380 (625)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~ 380 (625)
.--++++..+++|+.|+|+.|....+. +..+..+..|+.|.|++| .+..+. .+..+.+|++|+
T Consensus 307 ------------rih~d~WsftqkL~~LdLs~N~i~~l~--~~sf~~L~~Le~LnLs~N-si~~l~e~af~~lssL~~Ld 371 (873)
T KOG4194|consen 307 ------------RIHIDSWSFTQKLKELDLSSNRITRLD--EGSFRVLSQLEELNLSHN-SIDHLAEGAFVGLSSLHKLD 371 (873)
T ss_pred ------------eeecchhhhcccceeEeccccccccCC--hhHHHHHHHhhhhccccc-chHHHHhhHHHHhhhhhhhc
Confidence 233456777899999999999988874 667889999999999994 455554 367799999999
Q ss_pred ccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcC-
Q 037953 381 IKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSL- 459 (625)
Q Consensus 381 L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l- 459 (625)
|++|.---.+.+.... ..++++|+.|.+.+. +++.++... +..+++||.|++.++ .+.+|
T Consensus 372 Lr~N~ls~~IEDaa~~---------------f~gl~~LrkL~l~gN-qlk~I~krA--fsgl~~LE~LdL~~N-aiaSIq 432 (873)
T KOG4194|consen 372 LRSNELSWCIEDAAVA---------------FNGLPSLRKLRLTGN-QLKSIPKRA--FSGLEALEHLDLGDN-AIASIQ 432 (873)
T ss_pred CcCCeEEEEEecchhh---------------hccchhhhheeecCc-eeeecchhh--hccCcccceecCCCC-cceeec
Confidence 9997743344332111 556899999999875 566655332 447999999999995 56665
Q ss_pred CcCCCCCCCCCEEEEec
Q 037953 460 PDQLLQSSTLKTLRINR 476 (625)
Q Consensus 460 p~~~~~l~~L~~L~l~~ 476 (625)
|..+..+ .|++|.+..
T Consensus 433 ~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 433 PNAFEPM-ELKELVMNS 448 (873)
T ss_pred ccccccc-hhhhhhhcc
Confidence 4445545 788877643
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.87 E-value=2.9e-24 Score=208.30 Aligned_cols=356 Identities=20% Similarity=0.231 Sum_probs=265.8
Q ss_pred CceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhccc
Q 037953 72 EKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGV 151 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~ 151 (625)
..+..+.+++|....+.+.+.++..+.+|.+++|. ...+| .+++.+..++.|+.+ +|.+..+|+.+
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~---l~~lp---~aig~l~~l~~l~vs--------~n~ls~lp~~i 110 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNK---LSQLP---AAIGELEALKSLNVS--------HNKLSELPEQI 110 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccch---hhhCC---HHHHHHHHHHHhhcc--------cchHhhccHHH
Confidence 35678889999998888889999999999999976 56677 889999999999999 99999999999
Q ss_pred ccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCC
Q 037953 152 EKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLS 229 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 229 (625)
+.+..|+.|+. .+ ..++|++++.+..|+.|+..+|+ +.++|++++.+.+|..|++..|.++.+|+..-+++.|++|+
T Consensus 111 ~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld 189 (565)
T KOG0472|consen 111 GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLD 189 (565)
T ss_pred hhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc-cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcc
Confidence 99999999999 54 99999999999999999999998 99999999999999999998899999998877799999998
Q ss_pred ceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccccccc
Q 037953 230 EFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNE 309 (625)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 309 (625)
...+-... .+..++.+.+|.. |++.. +.+. +...|.+|..|.+|+++.|.
T Consensus 190 ~~~N~L~t-----lP~~lg~l~~L~~----LyL~~----Nki~--~lPef~gcs~L~Elh~g~N~--------------- 239 (565)
T KOG0472|consen 190 CNSNLLET-----LPPELGGLESLEL----LYLRR----NKIR--FLPEFPGCSLLKELHVGENQ--------------- 239 (565)
T ss_pred cchhhhhc-----CChhhcchhhhHH----HHhhh----cccc--cCCCCCccHHHHHHHhcccH---------------
Confidence 65444333 4555555555443 33332 1111 12268889999999999884
Q ss_pred chhhHHHHhhcC-CCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccc
Q 037953 310 NAAKHEAICEAL-WPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTSV 387 (625)
Q Consensus 310 ~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l 387 (625)
.+.++... ..++++..|++..|+..+. |..+.-+.+|.+|++++ +.+..+| .+|++ +|+.|.+.+++ +
T Consensus 240 ----i~~lpae~~~~L~~l~vLDLRdNklke~---Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP-l 309 (565)
T KOG0472|consen 240 ----IEMLPAEHLKHLNSLLVLDLRDNKLKEV---PDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP-L 309 (565)
T ss_pred ----HHhhHHHHhcccccceeeeccccccccC---chHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc-h
Confidence 45566554 4789999999999999998 99999999999999998 5677777 59999 99999999987 4
Q ss_pred eeeCccCCC------------------CC-----CCCCCC-CCCCCCCCCCCCCCCeeeccCcc----------------
Q 037953 388 ERVGDESLG------------------IA-----NGDHGA-PSSSSVNNIAFPKLKELEFSGLQ---------------- 427 (625)
Q Consensus 388 ~~l~~~~~~------------------~~-----~~~~~~-~~~~~~~~~~l~~L~~L~L~~~~---------------- 427 (625)
+.+-.+... .. ..+... +++........-..+.|++++-.
T Consensus 310 rTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~ 389 (565)
T KOG0472|consen 310 RTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEI 389 (565)
T ss_pred HHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcc
Confidence 433221110 00 000000 11122222333345555554310
Q ss_pred ---------cccccc---------------------cCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecC
Q 037953 428 ---------EWEDWD---------------------FRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRC 477 (625)
Q Consensus 428 ---------~l~~~~---------------------~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 477 (625)
++.+++ +.+..+..+++|..|++++ +.+-++|..++.+..|++|+|+.+
T Consensus 390 Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e~~~lv~Lq~LnlS~N 468 (565)
T KOG0472|consen 390 VTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEEMGSLVRLQTLNLSFN 468 (565)
T ss_pred eEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchhhhhhhhhheeccccc
Confidence 000110 1111145788999999998 578999999999999999999988
Q ss_pred cchhhcc
Q 037953 478 RVLEEHF 484 (625)
Q Consensus 478 ~~L~~~~ 484 (625)
.+...|
T Consensus 469 -rFr~lP 474 (565)
T KOG0472|consen 469 -RFRMLP 474 (565)
T ss_pred -ccccch
Confidence 444444
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=7.3e-21 Score=202.63 Aligned_cols=122 Identities=26% Similarity=0.275 Sum_probs=79.6
Q ss_pred eEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccc
Q 037953 74 LRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVE 152 (625)
Q Consensus 74 lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~ 152 (625)
+.+|++..|.+-..| +.+.++-+|++|++++|. ....| ..+..+.+|+.|+++ .|.+..+|.+.+
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~---~~~fp---~~it~l~~L~~ln~s--------~n~i~~vp~s~~ 88 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQ---ISSFP---IQITLLSHLRQLNLS--------RNYIRSVPSSCS 88 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccc---cccCC---chhhhHHHHhhcccc--------hhhHhhCchhhh
Confidence 555666666553333 233344457777777765 44455 556667777777777 666777776677
Q ss_pred cccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCc
Q 037953 153 KLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTED 210 (625)
Q Consensus 153 ~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~ 210 (625)
++.+|++|+| |+ +..+|.++..+++|++||+++|. +..+|..+..++.+..++.++|
T Consensus 89 ~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 89 NMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchhHHhhhHHHHHhhhcc
Confidence 7777777777 66 77777777777777777777776 6667776777777777766555
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.75 E-value=4.7e-20 Score=196.51 Aligned_cols=100 Identities=23% Similarity=0.248 Sum_probs=76.4
Q ss_pred ceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccc
Q 037953 73 KLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVE 152 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~ 152 (625)
++++|++++|....+|..+..+++|+.|.++.|. +...| ...+++++|++|.|. +|.+..+|.++.
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~---i~~vp---~s~~~~~~l~~lnL~--------~n~l~~lP~~~~ 111 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY---IRSVP---SSCSNMRNLQYLNLK--------NNRLQSLPASIS 111 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhh---HhhCc---hhhhhhhcchhheec--------cchhhcCchhHH
Confidence 3778888888888888777778888888888865 55566 677888888888888 777888888888
Q ss_pred cccccceecC--CCCCCCchhhcCCCCCceEeecCC
Q 037953 153 KLIHLRYLKL--NLVGDLPEKCCELLNLQTLELENS 186 (625)
Q Consensus 153 ~L~~L~~L~L--~~l~~lP~~i~~L~~L~~L~L~~~ 186 (625)
.+++|++|++ |....+|..+..++.++.++.++|
T Consensus 112 ~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N 147 (1081)
T KOG0618|consen 112 ELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNN 147 (1081)
T ss_pred hhhcccccccchhccCCCchhHHhhhHHHHHhhhcc
Confidence 8888888888 447777777777766666666666
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=9.3e-18 Score=145.11 Aligned_cols=151 Identities=26% Similarity=0.269 Sum_probs=136.1
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
.+.+++|.+++|++..+|+.+..+.+|++|.+++|+ ...+| ..++++++||.|+++ -|++..+|..
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq---ie~lp---~~issl~klr~lnvg--------mnrl~~lprg 97 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ---IEELP---TSISSLPKLRILNVG--------MNRLNILPRG 97 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch---hhhcC---hhhhhchhhhheecc--------hhhhhcCccc
Confidence 457899999999999999999999999999999987 77788 889999999999999 8888899999
Q ss_pred cccccccceecC--CC--CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccc
Q 037953 151 VEKLIHLRYLKL--NL--VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLR 226 (625)
Q Consensus 151 ~~~L~~L~~L~L--~~--l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~ 226 (625)
|+.++.|++||| ++ -..+|..+..++.|+.|.|+.|. +..+|.++++|++||.|.+..|.+-++|.+++.++.|+
T Consensus 98 fgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lr 176 (264)
T KOG0617|consen 98 FGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLR 176 (264)
T ss_pred cCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHH
Confidence 999999999999 55 57789999999999999999998 89999999999999999998888899999999999999
Q ss_pred cCCceEecCC
Q 037953 227 TLSEFVVASG 236 (625)
Q Consensus 227 ~L~~~~~~~~ 236 (625)
.|.+..+...
T Consensus 177 elhiqgnrl~ 186 (264)
T KOG0617|consen 177 ELHIQGNRLT 186 (264)
T ss_pred HHhcccceee
Confidence 9987655443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.58 E-value=6.8e-15 Score=162.19 Aligned_cols=117 Identities=23% Similarity=0.301 Sum_probs=70.3
Q ss_pred CCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceeeCccCCCCCCCCCCCC
Q 037953 326 NLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAP 405 (625)
Q Consensus 326 ~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~ 405 (625)
+|+.|++++|....+ |.. .++|+.|++++| .+..+|.+ .++|+.|++++|. ++.+|.
T Consensus 343 ~Lq~LdLS~N~Ls~L---P~l---p~~L~~L~Ls~N-~L~~LP~l--~~~L~~LdLs~N~-Lt~LP~------------- 399 (788)
T PRK15387 343 GLQELSVSDNQLASL---PTL---PSELYKLWAYNN-RLTSLPAL--PSGLKELIVSGNR-LTSLPV------------- 399 (788)
T ss_pred ccceEecCCCccCCC---CCC---Ccccceehhhcc-ccccCccc--ccccceEEecCCc-ccCCCC-------------
Confidence 455555555555544 432 245556666653 34445532 2456677776654 444432
Q ss_pred CCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcchh
Q 037953 406 SSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLE 481 (625)
Q Consensus 406 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~ 481 (625)
..++|+.|+++++. +..++. ...+|+.|++++ +.++.+|..+.++++|+.|++++|+.-.
T Consensus 400 --------l~s~L~~LdLS~N~-LssIP~------l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 400 --------LPSELKELMVSGNR-LTSLPM------LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred --------cccCCCEEEccCCc-CCCCCc------chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCCCc
Confidence 12457777777652 444331 134678888888 5688888888888899999998887543
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.52 E-value=1.6e-14 Score=162.64 Aligned_cols=327 Identities=24% Similarity=0.286 Sum_probs=207.4
Q ss_pred ccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccc--hhhhhcc-cccccccceecC--CC-C
Q 037953 92 FNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQ--TNEILNG-VEKLIHLRYLKL--NL-V 165 (625)
Q Consensus 92 ~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~--l~~lp~~-~~~L~~L~~L~L--~~-l 165 (625)
......|...+.++. ...++ . -..++.|++|-+. +|. +..++.. |..++.|++||| |. +
T Consensus 520 ~~~~~~rr~s~~~~~---~~~~~---~-~~~~~~L~tLll~--------~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l 584 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNK---IEHIA---G-SSENPKLRTLLLQ--------RNSDWLLEISGEFFRSLPLLRVLDLSGNSSL 584 (889)
T ss_pred cchhheeEEEEeccc---hhhcc---C-CCCCCccceEEEe--------ecchhhhhcCHHHHhhCcceEEEECCCCCcc
Confidence 456788999988876 23332 2 2355689999999 775 6666544 788999999999 55 9
Q ss_pred CCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEe-cCcccccccccCCCccccccCCceEecCCCCcCCCcc
Q 037953 166 GDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIF-TEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEA 244 (625)
Q Consensus 166 ~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l-~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~ 244 (625)
..+|++|++|.+||+|+++++. +..+|.++++|++|.+|++ ....+..+|.....|++|++|.+....... ..
T Consensus 585 ~~LP~~I~~Li~LryL~L~~t~-I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-----~~ 658 (889)
T KOG4658|consen 585 SKLPSSIGELVHLRYLDLSDTG-ISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN-----DK 658 (889)
T ss_pred CcCChHHhhhhhhhcccccCCC-ccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc-----ch
Confidence 9999999999999999999999 9999999999999999999 455555665556669999999886554221 25
Q ss_pred cChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCC
Q 037953 245 CKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPP 324 (625)
Q Consensus 245 ~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (625)
..++++.+|.+|+ .+.+..... .....+..+.+|..+...-.. ... ........+..+
T Consensus 659 ~~l~el~~Le~L~-~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~---------~~~------~~~~~~~~~~~l 716 (889)
T KOG4658|consen 659 LLLKELENLEHLE-NLSITISSV------LLLEDLLGMTRLRSLLQSLSI---------EGC------SKRTLISSLGSL 716 (889)
T ss_pred hhHHhhhcccchh-hheeecchh------HhHhhhhhhHHHHHHhHhhhh---------ccc------ccceeecccccc
Confidence 6677788888887 676643211 111122333333322211000 000 123445567778
Q ss_pred CCCcEEEEeccCCCcccCCchhhc-----c-cccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceeeCccCCCCC
Q 037953 325 PNLESLEIAGFRGRKMMLSTNWMA-----S-LNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIA 398 (625)
Q Consensus 325 ~~L~~L~L~~~~~~~~~~~p~~l~-----~-l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~ 398 (625)
.+|+.|.+.+|...+.. ..|.. . ++++..+.+.+|.....+.+....|+|+.|.+..|..++.+........
T Consensus 717 ~~L~~L~i~~~~~~e~~--~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~ 794 (889)
T KOG4658|consen 717 GNLEELSILDCGISEIV--IEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALL 794 (889)
T ss_pred cCcceEEEEcCCCchhh--cccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhh
Confidence 88999999888876431 12211 2 5677777777787777777766788899999988887766543211111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCee-eccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecC
Q 037953 399 NGDHGAPSSSSVNNIAFPKLKEL-EFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRC 477 (625)
Q Consensus 399 ~~~~~~~~~~~~~~~~l~~L~~L-~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 477 (625)
.+.+ ....|.++..+ .+.+...++.+...+- .+++|+.+.+..|++++.+| .+.++.+.+|
T Consensus 795 ~l~~--------~i~~f~~~~~l~~~~~l~~l~~i~~~~l---~~~~l~~~~ve~~p~l~~~P-------~~~~~~i~~~ 856 (889)
T KOG4658|consen 795 ELKE--------LILPFNKLEGLRMLCSLGGLPQLYWLPL---SFLKLEELIVEECPKLGKLP-------LLSTLTIVGC 856 (889)
T ss_pred hccc--------EEecccccccceeeecCCCCceeEeccc---CccchhheehhcCcccccCc-------cccccceecc
Confidence 1000 02344444444 3444444444433332 34556666666666555443 4445556665
Q ss_pred -cchh
Q 037953 478 -RVLE 481 (625)
Q Consensus 478 -~~L~ 481 (625)
+.+.
T Consensus 857 ~~~~~ 861 (889)
T KOG4658|consen 857 EEKLK 861 (889)
T ss_pred cccee
Confidence 4443
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.51 E-value=4.2e-16 Score=134.90 Aligned_cols=143 Identities=27% Similarity=0.260 Sum_probs=129.5
Q ss_pred cccCCCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh
Q 037953 66 LINTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN 145 (625)
Q Consensus 66 ~~~~~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~ 145 (625)
+......++..|.+++|+++++|.++..+++||.|.+.-|+ ...+| .-|+.++.|++|||. +|.+.
T Consensus 50 pnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr---l~~lp---rgfgs~p~levldlt--------ynnl~ 115 (264)
T KOG0617|consen 50 PNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR---LNILP---RGFGSFPALEVLDLT--------YNNLN 115 (264)
T ss_pred CcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh---hhcCc---cccCCCchhhhhhcc--------ccccc
Confidence 33344678999999999999999999999999999999887 66778 889999999999999 88854
Q ss_pred --hhhcccccccccceecC--CCCCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCC
Q 037953 146 --EILNGVEKLIHLRYLKL--NLVGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEK 221 (625)
Q Consensus 146 --~lp~~~~~L~~L~~L~L--~~l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~ 221 (625)
.+|..|..+..|+.|+| +..+.+|..+++|++||.|.++.|. +-++|.+++.|++|++|++.+|.++.+|.++++
T Consensus 116 e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 116 ENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred cccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 68999999999999999 4499999999999999999999999 889999999999999999999999999998876
Q ss_pred cc
Q 037953 222 LT 223 (625)
Q Consensus 222 L~ 223 (625)
+.
T Consensus 195 l~ 196 (264)
T KOG0617|consen 195 LD 196 (264)
T ss_pred hh
Confidence 54
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.49 E-value=4.6e-14 Score=156.65 Aligned_cols=225 Identities=17% Similarity=0.200 Sum_probs=127.8
Q ss_pred ceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccc
Q 037953 73 KLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVE 152 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~ 152 (625)
+...|.+.++++..+|..+. +.|+.|++++|. ...+| ..+. ++|++|+++ +|.+..+|..+.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~---LtsLP---~~l~--~nL~~L~Ls--------~N~LtsLP~~l~ 240 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNE---LKSLP---ENLQ--GNIKTLYAN--------SNQLTSIPATLP 240 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCC---CCcCC---hhhc--cCCCEEECC--------CCccccCChhhh
Confidence 45667777777666666543 467777777764 33445 3332 467777777 666666765543
Q ss_pred cccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCCc
Q 037953 153 KLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSE 230 (625)
Q Consensus 153 ~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~ 230 (625)
.+|+.|+| ++ +..+|..+. .+|+.|++++|. +..+|..+. ++|++|++++|.++.+|..+. ++|+.|++
T Consensus 241 --~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~L 311 (754)
T PRK15370 241 --DTIQEMELSINRITELPERLP--SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNV 311 (754)
T ss_pred --ccccEEECcCCccCcCChhHh--CCCCEEECcCCc-cCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHh
Confidence 36777777 33 667776654 467777777776 667776553 467777776677766665442 24444444
Q ss_pred eEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccc
Q 037953 231 FVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNEN 310 (625)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 310 (625)
..+.... ++. .+ .++|+.|++++|.++
T Consensus 312 s~N~Lt~-----LP~--------------------------------~l--~~sL~~L~Ls~N~Lt-------------- 338 (754)
T PRK15370 312 QSNSLTA-----LPE--------------------------------TL--PPGLKTLEAGENALT-------------- 338 (754)
T ss_pred cCCcccc-----CCc--------------------------------cc--cccceeccccCCccc--------------
Confidence 3322111 000 00 134555566555321
Q ss_pred hhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-CCCCCCcceeecccccccee
Q 037953 311 AAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-LGQLPSLEILLIKDMTSVER 389 (625)
Q Consensus 311 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~ 389 (625)
.++..+ +++|+.|++++|....+ |..+. ++|+.|+|++|. +..+|. + .++|+.|++++|. +..
T Consensus 339 -----~LP~~l--~~sL~~L~Ls~N~L~~L---P~~lp--~~L~~LdLs~N~-Lt~LP~~l--~~sL~~LdLs~N~-L~~ 402 (754)
T PRK15370 339 -----SLPASL--PPELQVLDVSKNQITVL---PETLP--PTITTLDVSRNA-LTNLPENL--PAALQIMQASRNN-LVR 402 (754)
T ss_pred -----cCChhh--cCcccEEECCCCCCCcC---Chhhc--CCcCEEECCCCc-CCCCCHhH--HHHHHHHhhccCC-ccc
Confidence 122222 24677777777666555 55442 567777777753 445553 2 1357777777654 555
Q ss_pred eCcc
Q 037953 390 VGDE 393 (625)
Q Consensus 390 l~~~ 393 (625)
+|..
T Consensus 403 LP~s 406 (754)
T PRK15370 403 LPES 406 (754)
T ss_pred Cchh
Confidence 5543
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.46 E-value=1.6e-14 Score=140.89 Aligned_cols=126 Identities=18% Similarity=0.205 Sum_probs=91.2
Q ss_pred CCCCceEEEEEEcCCCCcchh-hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccc-cchhh
Q 037953 69 TCPEKLRHLMLVLGYEAPSLV-SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEE-DQTNE 146 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~-~~l~~ 146 (625)
..|++...+.|..|++..+|+ +|..+++||.|+|+.|. +..+-| ++|.+++.|-.|-+. + |.|++
T Consensus 64 ~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~--Is~I~p---~AF~GL~~l~~Lvly--------g~NkI~~ 130 (498)
T KOG4237|consen 64 NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN--ISFIAP---DAFKGLASLLSLVLY--------GNNKITD 130 (498)
T ss_pred cCCCcceEEEeccCCcccCChhhccchhhhceecccccc--hhhcCh---HhhhhhHhhhHHHhh--------cCCchhh
Confidence 456777788888888877764 67778888888888854 455556 778888887777776 4 66888
Q ss_pred hhcc-cccccccceecC--CCCCCCc-hhhcCCCCCceEeecCCCCCCcccc-ccccccccceEEec
Q 037953 147 ILNG-VEKLIHLRYLKL--NLVGDLP-EKCCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFT 208 (625)
Q Consensus 147 lp~~-~~~L~~L~~L~L--~~l~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~ 208 (625)
+|.. |++|..|+-|.+ |.+..++ +.+..|++|..|.+..|. +..++. .+..+..++++.+.
T Consensus 131 l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 131 LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchh-hhhhccccccchhccchHhhh
Confidence 8754 777888888777 4455554 457777788888887777 777776 37777777777773
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=1.4e-13 Score=152.86 Aligned_cols=223 Identities=17% Similarity=0.227 Sum_probs=158.8
Q ss_pred CCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 70 CPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
.+++++.|.+.+|.+..+|..+. ++|++|++++|. ...+| ..+. .+|+.|+|+ +|.+..+|.
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~---LtsLP---~~l~--~~L~~L~Ls--------~N~L~~LP~ 258 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ---LTSIP---ATLP--DTIQEMELS--------INRITELPE 258 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc---cccCC---hhhh--ccccEEECc--------CCccCcCCh
Confidence 46789999999999999988764 699999999975 34566 5443 479999999 889889987
Q ss_pred ccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCcccccc
Q 037953 150 GVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRT 227 (625)
Q Consensus 150 ~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~ 227 (625)
.+. .+|++|++ ++ +..+|..+. .+|++|++++|. ++.+|..+. ++|++|++++|.+..+|..+. ++|+.
T Consensus 259 ~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-Lt~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~ 329 (754)
T PRK15370 259 RLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-IRTLPAHLP--SGITHLNVQSNSLTALPETLP--PGLKT 329 (754)
T ss_pred hHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-cccCcccch--hhHHHHHhcCCccccCCcccc--cccee
Confidence 765 58999999 66 889998775 589999999998 999987654 579999998899998886553 56777
Q ss_pred CCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccccc
Q 037953 228 LSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAIS 307 (625)
Q Consensus 228 L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 307 (625)
|.+..+.... ++. .+ .++|+.|++++|.+.
T Consensus 330 L~Ls~N~Lt~-----LP~--------------------------------~l--~~sL~~L~Ls~N~L~----------- 359 (754)
T PRK15370 330 LEAGENALTS-----LPA--------------------------------SL--PPELQVLDVSKNQIT----------- 359 (754)
T ss_pred ccccCCcccc-----CCh--------------------------------hh--cCcccEEECCCCCCC-----------
Confidence 6654332211 000 01 135667777766421
Q ss_pred ccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-----CCCCCCcceeecc
Q 037953 308 NENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-----LGQLPSLEILLIK 382 (625)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-----l~~l~~L~~L~L~ 382 (625)
.++..+ +++|+.|++++|....+ |..+. ..|+.|++++|. +..+|. .+.++++..|++.
T Consensus 360 --------~LP~~l--p~~L~~LdLs~N~Lt~L---P~~l~--~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~ 423 (754)
T PRK15370 360 --------VLPETL--PPTITTLDVSRNALTNL---PENLP--AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVE 423 (754)
T ss_pred --------cCChhh--cCCcCEEECCCCcCCCC---CHhHH--HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEee
Confidence 122222 25788888888777666 66553 467888888754 445552 3445778888887
Q ss_pred ccc
Q 037953 383 DMT 385 (625)
Q Consensus 383 ~~~ 385 (625)
+|+
T Consensus 424 ~Np 426 (754)
T PRK15370 424 YNP 426 (754)
T ss_pred CCC
Confidence 766
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.43 E-value=8.9e-13 Score=145.61 Aligned_cols=233 Identities=18% Similarity=0.110 Sum_probs=132.6
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
+.+++.|.+.+|.+..+|.. .++|++|++++|. ...+| .. .++|+.|+++ +|.+..+|..
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~---LtsLP---~l---p~sL~~L~Ls--------~N~L~~Lp~l 280 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ---LTSLP---VL---PPGLLELSIF--------SNPLTHLPAL 280 (788)
T ss_pred hcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc---cCccc---Cc---ccccceeecc--------CCchhhhhhc
Confidence 34667777777777666642 4667777777754 22334 21 3566777777 6666666642
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccC
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTL 228 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 228 (625)
+ .+|+.|++ .+ +..+|.. +++|++|++++|. +..+|... .+|+.|++++|.++.+|.. ..+|+.|
T Consensus 281 p---~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~~Lq~L 347 (788)
T PRK15387 281 P---SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPALP---SELCKLWAYNNQLTSLPTL---PSGLQEL 347 (788)
T ss_pred h---hhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCCc---ccccccccccCcccccccc---ccccceE
Confidence 2 45666777 33 6666642 3567777777776 66666532 3466666766767666642 2356666
Q ss_pred CceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccc
Q 037953 229 SEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISN 308 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 308 (625)
++.++.... ++..+ .++. .|.+.+.. +..+ +. ...+|+.|++++|.++
T Consensus 348 dLS~N~Ls~-----LP~lp---~~L~----~L~Ls~N~-L~~L----P~---l~~~L~~LdLs~N~Lt------------ 395 (788)
T PRK15387 348 SVSDNQLAS-----LPTLP---SELY----KLWAYNNR-LTSL----PA---LPSGLKELIVSGNRLT------------ 395 (788)
T ss_pred ecCCCccCC-----CCCCC---cccc----eehhhccc-cccC----cc---cccccceEEecCCccc------------
Confidence 665544332 12111 1222 23222210 1111 11 1246777777776421
Q ss_pred cchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-CCCCCCcceeeccccc
Q 037953 309 ENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-LGQLPSLEILLIKDMT 385 (625)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~ 385 (625)
.++. ..++|+.|++++|....+ |... .+|+.|++++| .++.+|. ++.+++|+.|+|++|+
T Consensus 396 -------~LP~---l~s~L~~LdLS~N~LssI---P~l~---~~L~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 396 -------SLPV---LPSELKELMVSGNRLTSL---PMLP---SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred -------CCCC---cccCCCEEEccCCcCCCC---Ccch---hhhhhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 1221 135677888888776665 6532 46777788774 4556774 6778888888888776
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.40 E-value=4.1e-14 Score=138.12 Aligned_cols=142 Identities=21% Similarity=0.200 Sum_probs=117.1
Q ss_pred EEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hccccccc
Q 037953 77 LMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVEKLI 155 (625)
Q Consensus 77 L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~L~ 155 (625)
++-++.++.++|..++ +.-..++|..|. +...+| .+|+.+++||.|||| +|.|..| |++|..+.
T Consensus 51 VdCr~~GL~eVP~~LP--~~tveirLdqN~--I~~iP~---~aF~~l~~LRrLdLS--------~N~Is~I~p~AF~GL~ 115 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP--PETVEIRLDQNQ--ISSIPP---GAFKTLHRLRRLDLS--------KNNISFIAPDAFKGLA 115 (498)
T ss_pred EEccCCCcccCcccCC--CcceEEEeccCC--cccCCh---hhccchhhhceeccc--------ccchhhcChHhhhhhH
Confidence 3344455677887664 567788899965 566667 999999999999999 9999988 88899999
Q ss_pred ccceecC--CC-CCCCchh-hcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccccc-cCCCccccccCC
Q 037953 156 HLRYLKL--NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPK-GIEKLTSLRTLS 229 (625)
Q Consensus 156 ~L~~L~L--~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~ 229 (625)
.|..|-+ ++ |+++|+. +++|..|+.|.+.-|+ +..++.. +..|++|..|.+..|.+..++. .+..+.+++++.
T Consensus 116 ~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlh 194 (498)
T KOG4237|consen 116 SLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLH 194 (498)
T ss_pred hhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHh
Confidence 9999888 45 9999975 8899999999999998 7766655 8999999999999999999987 477888888877
Q ss_pred ceEec
Q 037953 230 EFVVA 234 (625)
Q Consensus 230 ~~~~~ 234 (625)
+..+.
T Consensus 195 lA~np 199 (498)
T KOG4237|consen 195 LAQNP 199 (498)
T ss_pred hhcCc
Confidence 65443
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.22 E-value=2.6e-12 Score=131.68 Aligned_cols=138 Identities=22% Similarity=0.232 Sum_probs=64.9
Q ss_pred hhhccCCcceEEEeecccCCcc--ccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC--CC
Q 037953 89 VSIFNAIKLRSLILFYWIPNLD--AMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL--NL 164 (625)
Q Consensus 89 ~~~~~l~~Lr~L~L~~~~~~~~--~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L--~~ 164 (625)
..+..++.|+.|+++++..... ..++ ..+...+.|+.|+++++.... ....+..++..+.++++|++|++ |.
T Consensus 17 ~~~~~l~~L~~l~l~~~~l~~~~~~~i~---~~l~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 17 ELLPKLLCLQVLRLEGNTLGEEAAKALA---SALRPQPSLKELCLSLNETGR-IPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred HHHHHHhhccEEeecCCCCcHHHHHHHH---HHHhhCCCceEEeccccccCC-cchHHHHHHHHHHhcCceeEEEccCCC
Confidence 3444555566666666541100 1123 445556666666666322100 00012334445556666666666 33
Q ss_pred CC-CCchhhcCCCC---CceEeecCCCCCC-----ccccccccc-cccceEEecCcccc-----cccccCCCccccccCC
Q 037953 165 VG-DLPEKCCELLN---LQTLELENSSHFK-----RFPQGIGKL-INLRHLIFTEDLLE-----YMPKGIEKLTSLRTLS 229 (625)
Q Consensus 165 l~-~lP~~i~~L~~---L~~L~L~~~~~l~-----~lp~~l~~L-~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~ 229 (625)
+. ..+..+..+.+ |++|++++|. +. .+...+..+ ++|+.|+++++.++ .++..+..+++|++|+
T Consensus 93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~ 171 (319)
T cd00116 93 LGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELN 171 (319)
T ss_pred CChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEE
Confidence 32 34444444443 6666666665 43 122234445 66666666555443 2222333344455554
Q ss_pred ce
Q 037953 230 EF 231 (625)
Q Consensus 230 ~~ 231 (625)
+.
T Consensus 172 l~ 173 (319)
T cd00116 172 LA 173 (319)
T ss_pred Cc
Confidence 43
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.19 E-value=2.5e-12 Score=131.81 Aligned_cols=123 Identities=22% Similarity=0.220 Sum_probs=79.8
Q ss_pred EEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccch-----hhhhcccccccccceecC--CCCCC-----
Q 037953 100 LILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQT-----NEILNGVEKLIHLRYLKL--NLVGD----- 167 (625)
Q Consensus 100 L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l-----~~lp~~~~~L~~L~~L~L--~~l~~----- 167 (625)
|+|.++.. .....+ ..+..+.+|++|+++ ++.+ ..++..+...++|++|++ +.+..
T Consensus 3 l~L~~~~l-~~~~~~---~~~~~l~~L~~l~l~--------~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~ 70 (319)
T cd00116 3 LSLKGELL-KTERAT---ELLPKLLCLQVLRLE--------GNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGL 70 (319)
T ss_pred cccccCcc-cccchH---HHHHHHhhccEEeec--------CCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHH
Confidence 45555431 123334 678888999999999 5554 456777888888999999 33442
Q ss_pred --CchhhcCCCCCceEeecCCCCCCccccccccccc---cceEEecCccccc-----ccccCCCc-cccccCCceEec
Q 037953 168 --LPEKCCELLNLQTLELENSSHFKRFPQGIGKLIN---LRHLIFTEDLLEY-----MPKGIEKL-TSLRTLSEFVVA 234 (625)
Q Consensus 168 --lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~---L~~L~l~~~~l~~-----lp~~i~~L-~~L~~L~~~~~~ 234 (625)
++..+.++++|+.|++++|......+..+..+.+ |++|+++++.+.. +...+..+ ++|+.|++..+.
T Consensus 71 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 71 QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc
Confidence 3456778999999999999833345555665655 9999997766542 12223334 455555544433
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=1.4e-11 Score=125.87 Aligned_cols=143 Identities=23% Similarity=0.255 Sum_probs=114.7
Q ss_pred EEEEEcCCCCcchh--hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhccccc
Q 037953 76 HLMLVLGYEAPSLV--SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEK 153 (625)
Q Consensus 76 ~L~l~~~~~~~~~~--~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~ 153 (625)
++.|++-....+|. .-..+..-...+++.|+ ...+| ..+..+..|..|.|. +|.+..+|.++++
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR---~~elp---~~~~~f~~Le~liLy--------~n~~r~ip~~i~~ 119 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNR---FSELP---EEACAFVSLESLILY--------HNCIRTIPEAICN 119 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccc---cccCc---hHHHHHHHHHHHHHH--------hccceecchhhhh
Confidence 34444444445543 22445666677888876 56667 778888899999999 8889999999999
Q ss_pred ccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCCce
Q 037953 154 LIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEF 231 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~ 231 (625)
+..|.+||| .+ +..+|..++.|+ |+.|-+++|+ ++.+|..++.+.+|.+||.++|.+..+|..++.+.+|+.|.+.
T Consensus 120 L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vr 197 (722)
T KOG0532|consen 120 LEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVR 197 (722)
T ss_pred hhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHh
Confidence 999999999 44 999999999888 9999999998 9999999998899999999999999999999989988888765
Q ss_pred Eec
Q 037953 232 VVA 234 (625)
Q Consensus 232 ~~~ 234 (625)
.+.
T Consensus 198 Rn~ 200 (722)
T KOG0532|consen 198 RNH 200 (722)
T ss_pred hhh
Confidence 444
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=8.5e-11 Score=120.33 Aligned_cols=148 Identities=19% Similarity=0.233 Sum_probs=100.8
Q ss_pred eEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCc----------------------eeEEEe
Q 037953 74 LRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTC----------------------LRALRI 131 (625)
Q Consensus 74 lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~----------------------Lr~L~L 131 (625)
....+++.|.+.++|..+..|..|..+.|..|. ...+| ..+.++.. |++|.+
T Consensus 77 t~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~---~r~ip---~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~ 150 (722)
T KOG0532|consen 77 TVFADLSRNRFSELPEEACAFVSLESLILYHNC---IRTIP---EAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIV 150 (722)
T ss_pred hhhhhccccccccCchHHHHHHHHHHHHHHhcc---ceecc---hhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEE
Confidence 344555555555555554444445544444443 23333 34444444 455555
Q ss_pred ecCCCccccccchhhhhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecC
Q 037953 132 EGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTE 209 (625)
Q Consensus 132 s~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~ 209 (625)
+ +|+++.+|..++.+.+|..||. ++ +.++|..++.+.+|+.|.++.|+ +..+|++++.| .|..||++|
T Consensus 151 s--------NNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~El~~L-pLi~lDfSc 220 (722)
T KOG0532|consen 151 S--------NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEELCSL-PLIRLDFSC 220 (722)
T ss_pred e--------cCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHHHhCC-ceeeeeccc
Confidence 5 6667777777777777888887 44 88888888888888888888887 77888887754 588888899
Q ss_pred cccccccccCCCccccccCCceEecCCC
Q 037953 210 DLLEYMPKGIEKLTSLRTLSEFVVASGG 237 (625)
Q Consensus 210 ~~l~~lp~~i~~L~~L~~L~~~~~~~~~ 237 (625)
|++..+|..+.+|+.|++|.+-++...+
T Consensus 221 Nkis~iPv~fr~m~~Lq~l~LenNPLqS 248 (722)
T KOG0532|consen 221 NKISYLPVDFRKMRHLQVLQLENNPLQS 248 (722)
T ss_pred CceeecchhhhhhhhheeeeeccCCCCC
Confidence 9999999888889888888877666554
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.82 E-value=2.3e-09 Score=97.51 Aligned_cols=127 Identities=28% Similarity=0.285 Sum_probs=48.1
Q ss_pred ccCCcceEEEeecccCCccccCchhhHHHh-cCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCC
Q 037953 92 FNAIKLRSLILFYWIPNLDAMLPVLKGIFD-QLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDL 168 (625)
Q Consensus 92 ~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~-~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~l 168 (625)
.+..++|.|+|.+|.. ..+. .++ .+.+|++|+|+ +|.+..++ .+..+++|++|++ ++ +.++
T Consensus 16 ~n~~~~~~L~L~~n~I---~~Ie----~L~~~l~~L~~L~Ls--------~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQI---STIE----NLGATLDKLEVLDLS--------NNQITKLE-GLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-T--------TS--S--T-T----TT--EEE--SS---S-
T ss_pred cccccccccccccccc---cccc----chhhhhcCCCEEECC--------CCCCcccc-CccChhhhhhcccCCCCCCcc
Confidence 4555678888888762 2221 133 56778888888 77777775 5777888888888 44 7777
Q ss_pred chhh-cCCCCCceEeecCCCCCCcccc--ccccccccceEEecCcccccccc----cCCCccccccCCceEecC
Q 037953 169 PEKC-CELLNLQTLELENSSHFKRFPQ--GIGKLINLRHLIFTEDLLEYMPK----GIEKLTSLRTLSEFVVAS 235 (625)
Q Consensus 169 P~~i-~~L~~L~~L~L~~~~~l~~lp~--~l~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~~~~~~~ 235 (625)
++.+ ..+++|++|++++|. +.++-. .++.+++|++|++.+|.+...+. -+..+++|+.|+...+..
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred ccchHHhCCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEccH
Confidence 6555 357888888888887 665432 36677888888887777665542 255677777777655443
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.78 E-value=3.4e-09 Score=96.45 Aligned_cols=120 Identities=28% Similarity=0.216 Sum_probs=52.1
Q ss_pred CCceEEEEEEcCCCCcchhhhc-cCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIF-NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
+.+.|.|++.+|.+..+. .+. .+.+|++|++++|. ...++ .+..+++|++|+++ +|.+..+++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~---I~~l~----~l~~L~~L~~L~L~--------~N~I~~i~~ 81 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ---ITKLE----GLPGLPRLKTLDLS--------NNRISSISE 81 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS-----S--T----T----TT--EEE----------SS---S-CH
T ss_pred cccccccccccccccccc-chhhhhcCCCEEECCCCC---Ccccc----CccChhhhhhcccC--------CCCCCcccc
Confidence 457899999999986664 344 57899999999987 33332 37789999999999 999998865
Q ss_pred cc-ccccccceecC-CC-CCCCc--hhhcCCCCCceEeecCCCCCCcccc----ccccccccceEEe
Q 037953 150 GV-EKLIHLRYLKL-NL-VGDLP--EKCCELLNLQTLELENSSHFKRFPQ----GIGKLINLRHLIF 207 (625)
Q Consensus 150 ~~-~~L~~L~~L~L-~~-l~~lP--~~i~~L~~L~~L~L~~~~~l~~lp~----~l~~L~~L~~L~l 207 (625)
.+ ..+++|+.|++ ++ +..+- ..+..+++|++|+|.+|+ +..-+. .+..+++|+.||-
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETT
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCC
Confidence 55 46899999999 44 65543 467889999999999999 776543 2788999999997
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=9.5e-10 Score=104.16 Aligned_cols=130 Identities=25% Similarity=0.174 Sum_probs=98.3
Q ss_pred CCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 70 CPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
.|+.+..+++++|.+..+.+++.-.|++|.|+++.|. ...+ +.+..+++|+.|||| +|.+.++-.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~---i~~v----~nLa~L~~L~~LDLS--------~N~Ls~~~G 346 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR---IRTV----QNLAELPQLQLLDLS--------GNLLAECVG 346 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccc---eeee----hhhhhcccceEeecc--------cchhHhhhh
Confidence 4667888888888888888887778888888888865 2222 347788888888888 888777766
Q ss_pred ccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccc--cccccccccceEEecCccccccc
Q 037953 150 GVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFP--QGIGKLINLRHLIFTEDLLEYMP 216 (625)
Q Consensus 150 ~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp--~~l~~L~~L~~L~l~~~~l~~lp 216 (625)
.-.++-+.+.|.| .+ ++++ +.+++|.+|.+||+++|+ +..+- .+|++|+.|+++.+.+|.+..+|
T Consensus 347 wh~KLGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 347 WHLKLGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hHhhhcCEeeeehhhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 6667778888888 44 7777 578888888888888887 76553 34788888888888777776665
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.68 E-value=1.2e-09 Score=108.32 Aligned_cols=59 Identities=19% Similarity=0.114 Sum_probs=30.6
Q ss_pred ccceecC--CC---CCCCchhhcCCCCCceEeecCCCCCCccc--cccccccccceEEe-cCccccc
Q 037953 156 HLRYLKL--NL---VGDLPEKCCELLNLQTLELENSSHFKRFP--QGIGKLINLRHLIF-TEDLLEY 214 (625)
Q Consensus 156 ~L~~L~L--~~---l~~lP~~i~~L~~L~~L~L~~~~~l~~lp--~~l~~L~~L~~L~l-~~~~l~~ 214 (625)
-|+.|.+ |. ...+-....+++++++|++.+|..+++-. .--..+.+|++|++ +|..++.
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~ 205 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITD 205 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHH
Confidence 3666666 33 22222334566677777777776554311 11234566777776 5555443
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.64 E-value=2e-08 Score=106.15 Aligned_cols=188 Identities=21% Similarity=0.257 Sum_probs=128.4
Q ss_pred EEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCC-ceeEEEeecCCCccccccchhhhhccccccc
Q 037953 77 LMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLT-CLRALRIEGTDNWELEEDQTNEILNGVEKLI 155 (625)
Q Consensus 77 L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~-~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~ 155 (625)
+.+..+........+...+.++.|++.++. ...+| .....++ +|+.|+++ +|.+..+|..++.++
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~---i~~i~---~~~~~~~~nL~~L~l~--------~N~i~~l~~~~~~l~ 163 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNN---ITDIP---PLIGLLKSNLKELDLS--------DNKIESLPSPLRNLP 163 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcc---cccCc---cccccchhhccccccc--------ccchhhhhhhhhccc
Confidence 455555543334455666788888888865 34444 4455564 88899998 888888887788889
Q ss_pred ccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCCceEe
Q 037953 156 HLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVV 233 (625)
Q Consensus 156 ~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~ 233 (625)
+|+.|++ .+ +..+|...+.+.+|+.|++++|. +..+|..+..+..|++|.++.|....++..+.++.++..+.+..+
T Consensus 164 ~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n 242 (394)
T COG4886 164 NLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN 242 (394)
T ss_pred cccccccCCchhhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc
Confidence 9999999 44 88888877788889999999888 888888777777788888877766666677777777777764333
Q ss_pred cCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEec
Q 037953 234 ASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKD 294 (625)
Q Consensus 234 ~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 294 (625)
.... .+.....+..++ .+.+++.. .... . .+....+++.|+++++.
T Consensus 243 ~~~~--------~~~~~~~l~~l~-~L~~s~n~----i~~i-~-~~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 243 KLED--------LPESIGNLSNLE-TLDLSNNQ----ISSI-S-SLGSLTNLRELDLSGNS 288 (394)
T ss_pred eeee--------ccchhccccccc-eecccccc----cccc-c-cccccCccCEEeccCcc
Confidence 3221 123333344444 55554422 1111 1 17778889999988774
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.61 E-value=2.3e-08 Score=105.66 Aligned_cols=168 Identities=26% Similarity=0.266 Sum_probs=140.2
Q ss_pred CceEEEEEEcCCCCcchhhhccCC-cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 72 EKLRHLMLVLGYEAPSLVSIFNAI-KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
..++.+.+.++.+..+++...... +|+.|++++|. ...+| ..+..+++|+.|+++ +|.+.++|..
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~---i~~l~---~~~~~l~~L~~L~l~--------~N~l~~l~~~ 181 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK---IESLP---SPLRNLPNLKNLDLS--------FNDLSDLPKL 181 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccc---hhhhh---hhhhccccccccccC--------Cchhhhhhhh
Confidence 468999999999999988877774 99999999987 55554 568999999999999 9999999987
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccC
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTL 228 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 228 (625)
.+.+++|+.|++ .+ +..+|..+..+..|++|.+++|. +...+..+.+++++..|.+.++.+..++..++.+++++.|
T Consensus 182 ~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L 260 (394)
T COG4886 182 LSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETL 260 (394)
T ss_pred hhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchhcccccccee
Confidence 779999999999 44 99999988888999999999997 6677788999999999999999888888889999999999
Q ss_pred CceEecCCCCcCCCcccChhccccccccccceEEec
Q 037953 229 SEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRG 264 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~ 264 (625)
++..+.... ... +..+..++ .+.+++
T Consensus 261 ~~s~n~i~~------i~~---~~~~~~l~-~L~~s~ 286 (394)
T COG4886 261 DLSNNQISS------ISS---LGSLTNLR-ELDLSG 286 (394)
T ss_pred ccccccccc------ccc---ccccCccC-EEeccC
Confidence 987776554 222 44555555 566554
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.51 E-value=1.3e-08 Score=96.64 Aligned_cols=124 Identities=21% Similarity=0.222 Sum_probs=76.1
Q ss_pred CCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchh
Q 037953 94 AIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEK 171 (625)
Q Consensus 94 l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~ 171 (625)
++.|.+++|++|. +..+. ++..-.+.+|+|++| +|.+..+- ++..+++|+.||| ++ +..+-..
T Consensus 283 Wq~LtelDLS~N~---I~~iD---ESvKL~Pkir~L~lS--------~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gw 347 (490)
T KOG1259|consen 283 WQELTELDLSGNL---ITQID---ESVKLAPKLRRLILS--------QNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGW 347 (490)
T ss_pred Hhhhhhccccccc---hhhhh---hhhhhccceeEEecc--------ccceeeeh-hhhhcccceEeecccchhHhhhhh
Confidence 4456666777654 33343 556666667777777 66665554 3666667777777 44 5555444
Q ss_pred hcCCCCCceEeecCCCCCCccccccccccccceEEecCccccccc--ccCCCccccccCCceEec
Q 037953 172 CCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMP--KGIEKLTSLRTLSEFVVA 234 (625)
Q Consensus 172 i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~~~~~~ 234 (625)
=.+|-+.+.|.|++|. +.++ .++++|.+|..||+..|+++.+. .+||+++.|+++.+.+++
T Consensus 348 h~KLGNIKtL~La~N~-iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 348 HLKLGNIKTLKLAQNK-IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred HhhhcCEeeeehhhhh-Hhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 4456666667777766 6655 45667777777777666665553 346666666666655443
No 34
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.49 E-value=9.8e-09 Score=101.88 Aligned_cols=150 Identities=14% Similarity=0.131 Sum_probs=81.9
Q ss_pred HhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC--CC-CCCCCcceeeccccccceeeCcc
Q 037953 317 ICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP--PL-GQLPSLEILLIKDMTSVERVGDE 393 (625)
Q Consensus 317 ~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~--~l-~~l~~L~~L~L~~~~~l~~l~~~ 393 (625)
+...-..+..|+.|+.+++.......+-.-..+.++|+.|.+..|...++.. .+ .+.+.|+.+++.+|..+..- .
T Consensus 286 ~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~--t 363 (483)
T KOG4341|consen 286 LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG--T 363 (483)
T ss_pred HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh--h
Confidence 3333444566777777666553310000111256777777777777665543 22 34677777777766532211 1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCccccccccc--CCCCcccCCCccEEEEecCCCCCc-CCcCCCCCCCCC
Q 037953 394 SLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDF--RKEDITIMPQINSLSIYGCHKLKS-LPDQLLQSSTLK 470 (625)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~--~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~ 470 (625)
+... ..++|.|+.|.+++|....+-.+ ......++..|+.|.+++|+.+++ .-..+..+++|+
T Consensus 364 L~sl--------------s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Le 429 (483)
T KOG4341|consen 364 LASL--------------SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLE 429 (483)
T ss_pred Hhhh--------------ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccc
Confidence 1111 45677777777777765544311 111122566777777777777654 222334466777
Q ss_pred EEEEecCcchhh
Q 037953 471 TLRINRCRVLEE 482 (625)
Q Consensus 471 ~L~l~~c~~L~~ 482 (625)
.+++.+|.....
T Consensus 430 ri~l~~~q~vtk 441 (483)
T KOG4341|consen 430 RIELIDCQDVTK 441 (483)
T ss_pred eeeeechhhhhh
Confidence 777777766554
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=4.1e-08 Score=98.10 Aligned_cols=69 Identities=22% Similarity=0.185 Sum_probs=45.5
Q ss_pred HHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCC--CCCCCCCCCcceeeccccc
Q 037953 315 EAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEI--MPPLGQLPSLEILLIKDMT 385 (625)
Q Consensus 315 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~~ 385 (625)
..+...+..+|+|+.|.+.+|...... .....-+..|+.|+|++++.+.. .+..+.+|.|+.|+++.|.
T Consensus 212 k~V~~~~~~fPsl~~L~L~~N~~~~~~--~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg 282 (505)
T KOG3207|consen 212 KDVQWILLTFPSLEVLYLEANEIILIK--ATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG 282 (505)
T ss_pred HHHHHHHHhCCcHHHhhhhccccccee--cchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC
Confidence 444455566788888888877432210 23334567888899988665542 3457888888888888765
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=3.8e-08 Score=98.32 Aligned_cols=138 Identities=17% Similarity=0.126 Sum_probs=67.9
Q ss_pred CcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh---hhhcccccccccceec
Q 037953 85 APSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN---EILNGVEKLIHLRYLK 161 (625)
Q Consensus 85 ~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~---~lp~~~~~L~~L~~L~ 161 (625)
+.+...-.++.+||...|.++. ....+ .+.....|+++|.|||| +|-+. .+-.-...|++|+.|+
T Consensus 111 Dki~akQsn~kkL~~IsLdn~~---V~~~~-~~~~~k~~~~v~~LdLS--------~NL~~nw~~v~~i~eqLp~Le~LN 178 (505)
T KOG3207|consen 111 DKIAAKQSNLKKLREISLDNYR---VEDAG-IEEYSKILPNVRDLDLS--------RNLFHNWFPVLKIAEQLPSLENLN 178 (505)
T ss_pred HHHHHHhhhHHhhhheeecCcc---ccccc-hhhhhhhCCcceeecch--------hhhHHhHHHHHHHHHhcccchhcc
Confidence 3444444556667776666654 22211 00245566777777777 44432 2222345666777777
Q ss_pred C-CC-CCCCch--hhcCCCCCceEeecCCCCCC--ccccccccccccceEEecCc-ccccccccCCCccccccCCceEec
Q 037953 162 L-NL-VGDLPE--KCCELLNLQTLELENSSHFK--RFPQGIGKLINLRHLIFTED-LLEYMPKGIEKLTSLRTLSEFVVA 234 (625)
Q Consensus 162 L-~~-l~~lP~--~i~~L~~L~~L~L~~~~~l~--~lp~~l~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~~~~~~ 234 (625)
| .+ +...-+ .-..+.+|+.|.|+.|. +. ++-......++|+.|++..| .+..-......++.|+.|++..+.
T Consensus 179 ls~Nrl~~~~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 179 LSSNRLSNFISSNTTLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred cccccccCCccccchhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence 7 22 222211 12356667777777776 44 12222445567777777444 221111112235556666655444
Q ss_pred C
Q 037953 235 S 235 (625)
Q Consensus 235 ~ 235 (625)
.
T Consensus 258 l 258 (505)
T KOG3207|consen 258 L 258 (505)
T ss_pred c
Confidence 3
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=1.2e-08 Score=96.76 Aligned_cols=34 Identities=15% Similarity=0.067 Sum_probs=16.9
Q ss_pred ceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEec
Q 037953 259 SLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKD 294 (625)
Q Consensus 259 ~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 294 (625)
.+.++.+.+++. ......+.+|+.|.+|+++||.
T Consensus 238 ~lnlsm~sG~t~--n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 238 RLNLSMCSGFTE--NALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred eeccccccccch--hHHHHHHHhhhhHhhcCchHhh
Confidence 445555544433 2223335556666666666553
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.29 E-value=1.4e-06 Score=96.84 Aligned_cols=89 Identities=26% Similarity=0.439 Sum_probs=62.7
Q ss_pred ceeEEEeecCCCccccccch-hhhhcccccccccceecC--CC-CCCCchhhcCCCCCceEeecCCCCCCcccccccccc
Q 037953 125 CLRALRIEGTDNWELEEDQT-NEILNGVEKLIHLRYLKL--NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLI 200 (625)
Q Consensus 125 ~Lr~L~Ls~c~~~~~~~~~l-~~lp~~~~~L~~L~~L~L--~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~ 200 (625)
.++.|+|+ +|.+ +.+|..++.+++|+.|+| |. .+.+|..++++++|+.|+|++|...+.+|..+++|+
T Consensus 419 ~v~~L~L~--------~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 419 FIDGLGLD--------NQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEEECC--------CCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 36777777 6664 366777777888888888 44 457777788888888888888874446777778888
Q ss_pred ccceEEecCcccc-cccccCCC
Q 037953 201 NLRHLIFTEDLLE-YMPKGIEK 221 (625)
Q Consensus 201 ~L~~L~l~~~~l~-~lp~~i~~ 221 (625)
+|++|++++|.+. .+|..++.
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred CCCEEECcCCcccccCChHHhh
Confidence 8888888555543 66766554
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.28 E-value=2.4e-07 Score=90.21 Aligned_cols=98 Identities=21% Similarity=0.145 Sum_probs=61.0
Q ss_pred HHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCccc--CCchhh-ccc
Q 037953 274 VKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMM--LSTNWM-ASL 350 (625)
Q Consensus 274 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~--~~p~~l-~~l 350 (625)
.....+..+++|+.|+++.|.++ .+ -...+...+..+++|+.|+++.|....-- .+-..+ ...
T Consensus 204 al~eal~~~~~LevLdl~DNtft------~e--------gs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~ 269 (382)
T KOG1909|consen 204 ALAEALEHCPHLEVLDLRDNTFT------LE--------GSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESA 269 (382)
T ss_pred HHHHHHHhCCcceeeecccchhh------hH--------HHHHHHHHhcccchheeecccccccccccHHHHHHHHhccC
Confidence 45566778888888888887543 00 12344556677788888888877654310 001111 256
Q ss_pred ccccEEEEeCCCCCCC----CC-CCCCCCCcceeeccccc
Q 037953 351 NMLKKLRLLNCPTCEI----MP-PLGQLPSLEILLIKDMT 385 (625)
Q Consensus 351 ~~L~~L~L~~c~~l~~----l~-~l~~l~~L~~L~L~~~~ 385 (625)
|+|+.|.+.+|....+ +. .....|.|+.|+|++|.
T Consensus 270 p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 270 PSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred CCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 8888888888653322 11 24458888999998876
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.25 E-value=1.7e-06 Score=96.11 Aligned_cols=102 Identities=24% Similarity=0.353 Sum_probs=86.5
Q ss_pred cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh-hhhcccccccccceecC--CC-CCCCchh
Q 037953 96 KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN-EILNGVEKLIHLRYLKL--NL-VGDLPEK 171 (625)
Q Consensus 96 ~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~-~lp~~~~~L~~L~~L~L--~~-l~~lP~~ 171 (625)
.++.|+|++|. +.+.+| ..++.+++|+.|+|+ +|.+. .+|..++.+++|++|+| |. .+.+|+.
T Consensus 419 ~v~~L~L~~n~--L~g~ip---~~i~~L~~L~~L~Ls--------~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~ 485 (623)
T PLN03150 419 FIDGLGLDNQG--LRGFIP---NDISKLRHLQSINLS--------GNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485 (623)
T ss_pred EEEEEECCCCC--ccccCC---HHHhCCCCCCEEECC--------CCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH
Confidence 48889999964 567788 889999999999999 88864 78989999999999999 44 5689999
Q ss_pred hcCCCCCceEeecCCCCCCccccccccc-cccceEEecCc
Q 037953 172 CCELLNLQTLELENSSHFKRFPQGIGKL-INLRHLIFTED 210 (625)
Q Consensus 172 i~~L~~L~~L~L~~~~~l~~lp~~l~~L-~~L~~L~l~~~ 210 (625)
++++++|++|+|++|...+.+|..++.+ .++..+++.+|
T Consensus 486 l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 486 LGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred HhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 9999999999999999556899888764 56778888555
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.13 E-value=5.5e-07 Score=87.81 Aligned_cols=256 Identities=20% Similarity=0.125 Sum_probs=125.6
Q ss_pred CCceEEEEEEcCCCC-----cchhhhccCCcceEEEeeccc-CCccccCc----hhhHHHhcCCceeEEEeecCCCcccc
Q 037953 71 PEKLRHLMLVLGYEA-----PSLVSIFNAIKLRSLILFYWI-PNLDAMLP----VLKGIFDQLTCLRALRIEGTDNWELE 140 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~-----~~~~~~~~l~~Lr~L~L~~~~-~~~~~~lp----~~~~~~~~l~~Lr~L~Ls~c~~~~~~ 140 (625)
...++.+.+++|.++ .+.+.+.+.+.||.-++++-- ......+| .+...+..+++|++||||
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS-------- 100 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS-------- 100 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc--------
Confidence 346788888888772 233455666777777777632 00111111 112445567788888888
Q ss_pred ccchh-----hhhcccccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccccccccccceEEecCccc
Q 037953 141 EDQTN-----EILNGVEKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLL 212 (625)
Q Consensus 141 ~~~l~-----~lp~~~~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l 212 (625)
+|.++ .+-+-+..+..|+.|.| |. ++..-.. +++ .|..|. .-..++.-++|+++..+.|.+
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeecccc
Confidence 66643 12222344555555555 22 3322110 000 000000 000122334566666666655
Q ss_pred ccccc-----cCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCe
Q 037953 213 EYMPK-----GIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVR 287 (625)
Q Consensus 213 ~~lp~-----~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~ 287 (625)
..-+. .+...+.|..+.+..+.... +.+......+..+++|+ +|+++...--..-.......+..+++|+.
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~---eG~~al~eal~~~~~Le-vLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRP---EGVTALAEALEHCPHLE-VLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccC---chhHHHHHHHHhCCcce-eeecccchhhhHHHHHHHHHhcccchhee
Confidence 44331 23333444444443333322 11112223455666666 66665522111112234455677778888
Q ss_pred EEEEEecccccccCCcccccccchhhHHHHhhcCC-CCCCCcEEEEeccCCCccc--CCchhhcccccccEEEEeCCCC
Q 037953 288 LILRFKDIDKAVKRWPEAISNENAAKHEAICEALW-PPPNLESLEIAGFRGRKMM--LSTNWMASLNMLKKLRLLNCPT 363 (625)
Q Consensus 288 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~L~~~~~~~~~--~~p~~l~~l~~L~~L~L~~c~~ 363 (625)
|++++|.+. .+ -...+.+.+. ..+.|+.|.+.+|....-. .+-..+...+.|..|+|++|..
T Consensus 246 l~l~dcll~------~~--------Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 246 LNLGDCLLE------NE--------GAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ecccccccc------cc--------cHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 888877532 11 1233444432 3678888888887654310 0022334678899999988754
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.12 E-value=2.5e-06 Score=63.58 Aligned_cols=56 Identities=29% Similarity=0.424 Sum_probs=28.5
Q ss_pred CceeEEEeecCCCccccccchhhhhc-ccccccccceecC-CC-CCCCch-hhcCCCCCceEeecCCC
Q 037953 124 TCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSS 187 (625)
Q Consensus 124 ~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~ 187 (625)
++|++|+++ +|.+..+|. .|..+++|++|++ ++ +..+|. .+.++++|++|++++|+
T Consensus 1 p~L~~L~l~--------~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLS--------NNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEET--------SSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECC--------CCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 356666666 666666653 3445555555555 22 444432 34445555555554443
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.07 E-value=4.9e-07 Score=95.89 Aligned_cols=125 Identities=22% Similarity=0.264 Sum_probs=81.5
Q ss_pred cCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCch
Q 037953 93 NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPE 170 (625)
Q Consensus 93 ~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~ 170 (625)
.+..+..+.+..|. +.. .- ..+..+++|..|++. +|.+..+...+..+.+|++|++ .+ |..+ .
T Consensus 70 ~l~~l~~l~l~~n~--i~~-~~---~~l~~~~~l~~l~l~--------~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~ 134 (414)
T KOG0531|consen 70 SLTSLKELNLRQNL--IAK-IL---NHLSKLKSLEALDLY--------DNKIEKIENLLSSLVNLQVLDLSFNKITKL-E 134 (414)
T ss_pred HhHhHHhhccchhh--hhh-hh---cccccccceeeeecc--------ccchhhcccchhhhhcchheeccccccccc-c
Confidence 45556666666643 222 11 336677778888887 7777777644777778888888 33 7777 4
Q ss_pred hhcCCCCCceEeecCCCCCCccccccccccccceEEecCccccccccc-CCCccccccCCceEec
Q 037953 171 KCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLSEFVVA 234 (625)
Q Consensus 171 ~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~ 234 (625)
.+..++.|+.|++++|. +..++ ++..+++|+.++++.|.+..+... ...+.+++.+.+..+.
T Consensus 135 ~l~~l~~L~~L~l~~N~-i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 135 GLSTLTLLKELNLSGNL-ISDIS-GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred chhhccchhhheeccCc-chhcc-CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 67777778888888887 66663 466677788888877777666542 3556666666654443
No 44
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.06 E-value=1.6e-05 Score=81.43 Aligned_cols=143 Identities=15% Similarity=0.245 Sum_probs=84.1
Q ss_pred HHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceeeCccC
Q 037953 315 EAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDES 394 (625)
Q Consensus 315 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~ 394 (625)
......+..+.+++.|++++|....+ |. -.++|+.|.+++|..++.+|.. -.++|+.|++++|..+..+|...
T Consensus 42 ~~a~~r~~~~~~l~~L~Is~c~L~sL---P~---LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~Cs~L~sLP~sL 114 (426)
T PRK15386 42 SEITPQIEEARASGRLYIKDCDIESL---PV---LPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHCPEISGLPESV 114 (426)
T ss_pred HHHHHHHHHhcCCCEEEeCCCCCccc---CC---CCCCCcEEEccCCCCcccCCch-hhhhhhheEccCccccccccccc
Confidence 34444566679999999999977776 62 2357999999999998888841 13689999999998788777543
Q ss_pred CCCCCCCCCCCCC-CCCCCCCC-CCCCeeeccCcccccccccCCCCcccC-CCccEEEEecCCCCCcCCcCCCCCCCCCE
Q 037953 395 LGIANGDHGAPSS-SSVNNIAF-PKLKELEFSGLQEWEDWDFRKEDITIM-PQINSLSIYGCHKLKSLPDQLLQSSTLKT 471 (625)
Q Consensus 395 ~~~~~~~~~~~~~-~~~~~~~l-~~L~~L~L~~~~~l~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 471 (625)
..+. ++. ....+..+ ++|+.|.+.+......+.... .+ ++|++|.+++|..+ .+|..+ ..+|+.
T Consensus 115 e~L~------L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~----~LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~ 181 (426)
T PRK15386 115 RSLE------IKGSATDSIKNVPNGLTSLSINSYNPENQARIDN----LISPSLKTLSLTGCSNI-ILPEKL--PESLQS 181 (426)
T ss_pred ceEE------eCCCCCcccccCcchHhheecccccccccccccc----ccCCcccEEEecCCCcc-cCcccc--cccCcE
Confidence 2221 110 00012233 245555553322111111000 12 46777777776543 344433 256777
Q ss_pred EEEecC
Q 037953 472 LRINRC 477 (625)
Q Consensus 472 L~l~~c 477 (625)
|+++.+
T Consensus 182 L~ls~n 187 (426)
T PRK15386 182 ITLHIE 187 (426)
T ss_pred EEeccc
Confidence 776654
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.01 E-value=5.4e-07 Score=95.58 Aligned_cols=106 Identities=27% Similarity=0.423 Sum_probs=86.0
Q ss_pred hcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCcccccccc
Q 037953 121 DQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGK 198 (625)
Q Consensus 121 ~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~ 198 (625)
..+..++.+++. .|.+..+-..+..+++|+.|++ .+ +..+...+..+++|++|++++|. |+.+ ..+..
T Consensus 69 ~~l~~l~~l~l~--------~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i-~~l~~ 138 (414)
T KOG0531|consen 69 ESLTSLKELNLR--------QNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKL-EGLST 138 (414)
T ss_pred HHhHhHHhhccc--------hhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccc-cchhh
Confidence 456677777788 8888876666889999999999 55 88886558999999999999998 8888 46888
Q ss_pred ccccceEEecCcccccccccCCCccccccCCceEecCCC
Q 037953 199 LINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGG 237 (625)
Q Consensus 199 L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~ 237 (625)
++.|+.|++.+|.+..++ ++..+.+|+.+++..+....
T Consensus 139 l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ 176 (414)
T KOG0531|consen 139 LTLLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVD 176 (414)
T ss_pred ccchhhheeccCcchhcc-CCccchhhhcccCCcchhhh
Confidence 999999999999998874 56668888888876655443
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.99 E-value=5.1e-06 Score=61.87 Aligned_cols=54 Identities=31% Similarity=0.435 Sum_probs=25.5
Q ss_pred cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-cccccccccceecC
Q 037953 96 KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGVEKLIHLRYLKL 162 (625)
Q Consensus 96 ~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~L~~L~~L~L 162 (625)
+|++|++++|. +....+ ++|.++++|++|+++ +|.+..+| ..|..+++|++|++
T Consensus 2 ~L~~L~l~~n~--l~~i~~---~~f~~l~~L~~L~l~--------~N~l~~i~~~~f~~l~~L~~L~l 56 (61)
T PF13855_consen 2 NLESLDLSNNK--LTEIPP---DSFSNLPNLETLDLS--------NNNLTSIPPDAFSNLPNLRYLDL 56 (61)
T ss_dssp TESEEEETSST--ESEECT---TTTTTGTTESEEEET--------SSSESEEETTTTTTSTTESEEEE
T ss_pred cCcEEECCCCC--CCccCH---HHHcCCCCCCEeEcc--------CCccCccCHHHHcCCCCCCEEeC
Confidence 44555555532 223333 445555555555555 45544443 23455555555554
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=7.3e-07 Score=84.96 Aligned_cols=180 Identities=21% Similarity=0.191 Sum_probs=106.1
Q ss_pred CCceEeecCCCCCC--ccccccccccccceEEecCccccc-ccccCCCccccccCCceEecCCCCcCCCcccChh-cccc
Q 037953 177 NLQTLELENSSHFK--RFPQGIGKLINLRHLIFTEDLLEY-MPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLE-GLRH 252 (625)
Q Consensus 177 ~L~~L~L~~~~~l~--~lp~~l~~L~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~-~l~~ 252 (625)
.||+|||+... ++ .+-.-+..+.+|+.|.+.++.+.. +-..+.+-.+|+.|++..+++.+ ...+. -+.+
T Consensus 186 Rlq~lDLS~s~-it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t------~n~~~ll~~s 258 (419)
T KOG2120|consen 186 RLQHLDLSNSV-ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFT------ENALQLLLSS 258 (419)
T ss_pred hhHHhhcchhh-eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccc------hhHHHHHHHh
Confidence 37777777765 44 232335666777777775555432 22345566677777766655544 22222 2455
Q ss_pred ccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEE
Q 037953 253 LNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEI 332 (625)
Q Consensus 253 L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L 332 (625)
++.|. .|.++||.............++ ++|+.|+++++. +.. ....+..-...+++|..|+|
T Consensus 259 cs~L~-~LNlsWc~l~~~~Vtv~V~his--e~l~~LNlsG~r---------rnl------~~sh~~tL~~rcp~l~~LDL 320 (419)
T KOG2120|consen 259 CSRLD-ELNLSWCFLFTEKVTVAVAHIS--ETLTQLNLSGYR---------RNL------QKSHLSTLVRRCPNLVHLDL 320 (419)
T ss_pred hhhHh-hcCchHhhccchhhhHHHhhhc--hhhhhhhhhhhH---------hhh------hhhHHHHHHHhCCceeeecc
Confidence 55665 6777777554443222222222 467888887652 000 11122222356889999999
Q ss_pred eccCCCcccCCchh---hcccccccEEEEeCCCCCCC--CCCCCCCCCcceeeccccc
Q 037953 333 AGFRGRKMMLSTNW---MASLNMLKKLRLLNCPTCEI--MPPLGQLPSLEILLIKDMT 385 (625)
Q Consensus 333 ~~~~~~~~~~~p~~---l~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~~ 385 (625)
+.+.... +.. +..++.|++|.++.|..+.. +-.+...|+|.+|++.+|-
T Consensus 321 SD~v~l~----~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 321 SDSVMLK----NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ccccccC----chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 8877655 433 33788999999998875532 2247788999999988764
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.91 E-value=1.6e-06 Score=73.24 Aligned_cols=111 Identities=19% Similarity=0.146 Sum_probs=74.0
Q ss_pred cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhccccc-ccccceecC-CC-CCCCchhh
Q 037953 96 KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEK-LIHLRYLKL-NL-VGDLPEKC 172 (625)
Q Consensus 96 ~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~-L~~L~~L~L-~~-l~~lP~~i 172 (625)
.+..++|++|..-.....+ ..+.+..+|...+|+ +|.+..+|..|.. .+.++.|+| ++ +.++|.++
T Consensus 28 E~h~ldLssc~lm~i~dav---y~l~~~~el~~i~ls--------~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~ 96 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAV---YMLSKGYELTKISLS--------DNGFKKFPKKFTIKFPTATTLNLANNEISDVPEEL 96 (177)
T ss_pred HhhhcccccchhhHHHHHH---HHHhCCceEEEEecc--------cchhhhCCHHHhhccchhhhhhcchhhhhhchHHH
Confidence 3445566666411111111 334555667777777 7777777766654 347777777 55 77788778
Q ss_pred cCCCCCceEeecCCCCCCccccccccccccceEEecCccccccccc
Q 037953 173 CELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKG 218 (625)
Q Consensus 173 ~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~ 218 (625)
..++.|+.|+++.|. +...|+.+..|.+|-.|+...|....+|..
T Consensus 97 Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 97 AAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hhhHHhhhcccccCc-cccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 888888888888887 777777777787888887777766666654
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=1.4e-05 Score=54.65 Aligned_cols=40 Identities=25% Similarity=0.454 Sum_probs=27.1
Q ss_pred CCCceEeecCCCCCCccccccccccccceEEecCccccccc
Q 037953 176 LNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMP 216 (625)
Q Consensus 176 ~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp 216 (625)
++|++|++++|. ++++|+.+++|++|++|++++|.++.+|
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 357777777777 7777766777777777777777666554
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.80 E-value=9.1e-07 Score=93.75 Aligned_cols=113 Identities=25% Similarity=0.272 Sum_probs=76.7
Q ss_pred ccchhhhhcccccccccceecC--CCCCCCchhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccccc
Q 037953 141 EDQTNEILNGVEKLIHLRYLKL--NLVGDLPEKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPK 217 (625)
Q Consensus 141 ~~~l~~lp~~~~~L~~L~~L~L--~~l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~ 217 (625)
+|.+..+-.++.-++.|+.||| |.+... +.+..|++|++|||++|. ++.+|.- ...+ +|+.|.+.+|.++++ .
T Consensus 173 yN~L~~mD~SLqll~ale~LnLshNk~~~v-~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~ 248 (1096)
T KOG1859|consen 173 YNRLVLMDESLQLLPALESLNLSHNKFTKV-DNLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNALTTL-R 248 (1096)
T ss_pred hhhHHhHHHHHHHHHHhhhhccchhhhhhh-HHHHhcccccccccccch-hccccccchhhh-hheeeeecccHHHhh-h
Confidence 6777777677777888888888 336666 377788888888888887 7777753 2233 388888888887777 5
Q ss_pred cCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEec
Q 037953 218 GIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRG 264 (625)
Q Consensus 218 ~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~ 264 (625)
++.+|.+|+.|++..+-... -..+..|..|..|+ .|.+.+
T Consensus 249 gie~LksL~~LDlsyNll~~------hseL~pLwsLs~L~-~L~LeG 288 (1096)
T KOG1859|consen 249 GIENLKSLYGLDLSYNLLSE------HSELEPLWSLSSLI-VLWLEG 288 (1096)
T ss_pred hHHhhhhhhccchhHhhhhc------chhhhHHHHHHHHH-HHhhcC
Confidence 78888888888876654443 33444455555555 554443
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.77 E-value=2.4e-05 Score=86.97 Aligned_cols=129 Identities=19% Similarity=0.161 Sum_probs=92.1
Q ss_pred CCceEEEEEEcCCC--Ccchhhhc-cCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh
Q 037953 71 PEKLRHLMLVLGYE--APSLVSIF-NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI 147 (625)
Q Consensus 71 ~~~lr~L~l~~~~~--~~~~~~~~-~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l 147 (625)
..++++|++.+... ..-|..++ -+|.||+|.+.+-.- ..+..- ....++++|+.||+| ++.+..+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~-~~~dF~---~lc~sFpNL~sLDIS--------~TnI~nl 188 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF-DNDDFS---QLCASFPNLRSLDIS--------GTNISNL 188 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee-cchhHH---HHhhccCccceeecC--------CCCccCc
Confidence 46789999988654 23333333 489999999999431 122222 567899999999999 8888877
Q ss_pred hcccccccccceecC-CC-CCCCc--hhhcCCCCCceEeecCCCCCCcccc-------ccccccccceEEecCcccc
Q 037953 148 LNGVEKLIHLRYLKL-NL-VGDLP--EKCCELLNLQTLELENSSHFKRFPQ-------GIGKLINLRHLIFTEDLLE 213 (625)
Q Consensus 148 p~~~~~L~~L~~L~L-~~-l~~lP--~~i~~L~~L~~L~L~~~~~l~~lp~-------~l~~L~~L~~L~l~~~~l~ 213 (625)
..+++|++|+.|.+ |- +..-. ..+.+|++|++||+|..... .-+. .-..|++|+.||.+.+.+.
T Consensus 189 -~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~-~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 189 -SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN-DDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred -HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccc-cchHHHHHHHHhcccCccccEEecCCcchh
Confidence 57999999999999 44 44432 46889999999999987633 2221 1234889999999766543
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.73 E-value=1.5e-06 Score=92.08 Aligned_cols=127 Identities=18% Similarity=0.059 Sum_probs=102.5
Q ss_pred CCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 70 CPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
.|.++...+.+.|.+..+..++.-++.|+.|+|++|+ +... +.+..|++|+.|||+ +|.+..+|.
T Consensus 162 ~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk--~~~v-----~~Lr~l~~LkhLDls--------yN~L~~vp~ 226 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNK--FTKV-----DNLRRLPKLKHLDLS--------YNCLRHVPQ 226 (1096)
T ss_pred hhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh--hhhh-----HHHHhcccccccccc--------cchhccccc
Confidence 4678899999999998888898889999999999976 4443 678999999999999 999999885
Q ss_pred ccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccc--cccccccccceEEecCcccc
Q 037953 150 GVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFP--QGIGKLINLRHLIFTEDLLE 213 (625)
Q Consensus 150 ~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp--~~l~~L~~L~~L~l~~~~l~ 213 (625)
-=..-.+|+.|.+ |+ ++++ ..+.+|++|+.||+++|- +.... .-++.|..|+.|.|.+|.+.
T Consensus 227 l~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 227 LSMVGCKLQLLNLRNNALTTL-RGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cchhhhhheeeeecccHHHhh-hhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 3222234999999 77 8888 689999999999999996 54332 22677888999999766654
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=5.2e-05 Score=51.85 Aligned_cols=37 Identities=38% Similarity=0.548 Sum_probs=22.6
Q ss_pred ccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccc
Q 037953 156 HLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFP 193 (625)
Q Consensus 156 ~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp 193 (625)
+|++|++ ++ +..+|..+++|++|++|++++|+ ++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 4555555 22 55555567777777777777776 66654
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.56 E-value=0.00015 Score=74.40 Aligned_cols=78 Identities=13% Similarity=0.112 Sum_probs=48.0
Q ss_pred CceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCcccccc-chhhhhcc
Q 037953 72 EKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEED-QTNEILNG 150 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~-~l~~lp~~ 150 (625)
.++++|+++++.+..+| .+ -++|++|.+++|.. ...+| +.+. ++|++|+++ +| .+..+|..
T Consensus 52 ~~l~~L~Is~c~L~sLP-~L--P~sLtsL~Lsnc~n--LtsLP---~~LP--~nLe~L~Ls--------~Cs~L~sLP~s 113 (426)
T PRK15386 52 RASGRLYIKDCDIESLP-VL--PNELTEITIENCNN--LTTLP---GSIP--EGLEKLTVC--------HCPEISGLPES 113 (426)
T ss_pred cCCCEEEeCCCCCcccC-CC--CCCCcEEEccCCCC--cccCC---chhh--hhhhheEcc--------Ccccccccccc
Confidence 45778888887777776 22 23588888887642 24455 4442 578888888 55 36666653
Q ss_pred cccccccceecC----CC-CCCCchhhc
Q 037953 151 VEKLIHLRYLKL----NL-VGDLPEKCC 173 (625)
Q Consensus 151 ~~~L~~L~~L~L----~~-l~~lP~~i~ 173 (625)
|+.|++ +. +..+|.++.
T Consensus 114 ------Le~L~L~~n~~~~L~~LPssLk 135 (426)
T PRK15386 114 ------VRSLEIKGSATDSIKNVPNGLT 135 (426)
T ss_pred ------cceEEeCCCCCcccccCcchHh
Confidence 444445 22 666776543
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.52 E-value=2.4e-05 Score=66.31 Aligned_cols=88 Identities=13% Similarity=0.147 Sum_probs=46.7
Q ss_pred CCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchh
Q 037953 94 AIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEK 171 (625)
Q Consensus 94 l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~ 171 (625)
...|...+|++|. +...++ .+-..++.++.|+|+ +|.+.++|..+..++.||.|++ .+ +...|..
T Consensus 52 ~~el~~i~ls~N~--fk~fp~---kft~kf~t~t~lNl~--------~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~v 118 (177)
T KOG4579|consen 52 GYELTKISLSDNG--FKKFPK---KFTIKFPTATTLNLA--------NNEISDVPEELAAMPALRSLNLRFNPLNAEPRV 118 (177)
T ss_pred CceEEEEecccch--hhhCCH---HHhhccchhhhhhcc--------hhhhhhchHHHhhhHHhhhcccccCccccchHH
Confidence 3444444555543 222222 333344455566666 5556666655666666666666 33 5555666
Q ss_pred hcCCCCCceEeecCCCCCCccccc
Q 037953 172 CCELLNLQTLELENSSHFKRFPQG 195 (625)
Q Consensus 172 i~~L~~L~~L~L~~~~~l~~lp~~ 195 (625)
+..|.+|-+||..+|. ...+|-.
T Consensus 119 i~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 119 IAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred HHHHHhHHHhcCCCCc-cccCcHH
Confidence 6666666666665555 4455444
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.35 E-value=0.00011 Score=81.87 Aligned_cols=76 Identities=26% Similarity=0.388 Sum_probs=37.0
Q ss_pred ccccceecC-CC---CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCccccccc--ccCCCcccccc
Q 037953 154 LIHLRYLKL-NL---VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMP--KGIEKLTSLRT 227 (625)
Q Consensus 154 L~~L~~L~L-~~---l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp--~~i~~L~~L~~ 227 (625)
|++|+.|.+ +. ..++-.-..++++|..||+|+++ ++.+ .++++|++|+.|.+.+-.+..-. ..+.+|++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 556666666 22 22233334455666666666665 5555 45566666666555433332211 12344444444
Q ss_pred CCce
Q 037953 228 LSEF 231 (625)
Q Consensus 228 L~~~ 231 (625)
|+++
T Consensus 225 LDIS 228 (699)
T KOG3665|consen 225 LDIS 228 (699)
T ss_pred eecc
Confidence 4443
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.00019 Score=68.88 Aligned_cols=57 Identities=25% Similarity=0.369 Sum_probs=29.4
Q ss_pred cccccccceecC-CC-----CCCCchhhcCCCCCceEeecCCCCCC--ccccccccccccceEEecCcc
Q 037953 151 VEKLIHLRYLKL-NL-----VGDLPEKCCELLNLQTLELENSSHFK--RFPQGIGKLINLRHLIFTEDL 211 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-----l~~lP~~i~~L~~L~~L~L~~~~~l~--~lp~~l~~L~~L~~L~l~~~~ 211 (625)
+.++++|++|+| |+ |+.+| ..+.+|++|-|.++. +. .....+..++.++.|+++.|.
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp---~p~~nl~~lVLNgT~-L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLP---LPLKNLRVLVLNGTG-LSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCc---ccccceEEEEEcCCC-CChhhhhhhhhcchhhhhhhhccch
Confidence 345555555555 32 33333 345566666666665 32 222334556666666665543
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.93 E-value=0.00023 Score=68.33 Aligned_cols=66 Identities=17% Similarity=0.091 Sum_probs=39.5
Q ss_pred CCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCC---CCCCCCCCcceeeccccccceee
Q 037953 323 PPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIM---PPLGQLPSLEILLIKDMTSVERV 390 (625)
Q Consensus 323 ~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l---~~l~~l~~L~~L~L~~~~~l~~l 390 (625)
-++++..+.+..|...+.. .-.....++.+--|.|+. .++.++ ..+.++++|..|.+++++-...+
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s-~ek~se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTES-SEKGSEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred hcccchheeeecCcccchh-hcccCCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 3567777777666543320 012233556666677766 334443 35778899999999888755444
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.88 E-value=0.00093 Score=63.45 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=33.5
Q ss_pred hhhcCCCCCceEeecCCCCCCccccc----cccccccceEEecCcccccc
Q 037953 170 EKCCELLNLQTLELENSSHFKRFPQG----IGKLINLRHLIFTEDLLEYM 215 (625)
Q Consensus 170 ~~i~~L~~L~~L~L~~~~~l~~lp~~----l~~L~~L~~L~l~~~~l~~l 215 (625)
+.+-++++|+..+||.|..-.+.|+. |++-+.|+||.+.+|.++.+
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~ 135 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPI 135 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCcc
Confidence 45668889999999998733345544 56678888888888876654
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.64 E-value=0.0017 Score=59.14 Aligned_cols=60 Identities=22% Similarity=0.301 Sum_probs=25.6
Q ss_pred HhcCCceeEEEeecCCCccccccchhhhhccccc-ccccceecC-CC-CCCCc--hhhcCCCCCceEeecCCC
Q 037953 120 FDQLTCLRALRIEGTDNWELEEDQTNEILNGVEK-LIHLRYLKL-NL-VGDLP--EKCCELLNLQTLELENSS 187 (625)
Q Consensus 120 ~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~-L~~L~~L~L-~~-l~~lP--~~i~~L~~L~~L~L~~~~ 187 (625)
|..++.|.+|.|+ +|.+..|.+.+.. +++|..|.| ++ +..+- ..+..+++|++|.+-+|.
T Consensus 60 lp~l~rL~tLll~--------nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 60 LPHLPRLHTLLLN--------NNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred CCCccccceEEec--------CCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc
Confidence 3445555555555 5555444333322 234444444 22 22221 123344444444444444
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.49 E-value=0.00039 Score=75.50 Aligned_cols=33 Identities=24% Similarity=0.127 Sum_probs=18.5
Q ss_pred CCCCceEeecCCCCCCc--cccccccccccceEEe
Q 037953 175 LLNLQTLELENSSHFKR--FPQGIGKLINLRHLIF 207 (625)
Q Consensus 175 L~~L~~L~L~~~~~l~~--lp~~l~~L~~L~~L~l 207 (625)
.+.|+.|.+.+|..+.. +-+....+++|+.|++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l 221 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDL 221 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecc
Confidence 55666666666654544 2233455566666666
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.31 E-value=0.0049 Score=56.21 Aligned_cols=100 Identities=25% Similarity=0.259 Sum_probs=54.9
Q ss_pred CceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchhhcC-CCCCceEeecCCCCCCcccc--cccc
Q 037953 124 TCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCE-LLNLQTLELENSSHFKRFPQ--GIGK 198 (625)
Q Consensus 124 ~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~-L~~L~~L~L~~~~~l~~lp~--~l~~ 198 (625)
.....+||+ +|.+..++ .|..++.|.+|.| ++ +..+-..+.. +++|..|.|.+|+ +.++-+ .+..
T Consensus 42 d~~d~iDLt--------dNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~ 111 (233)
T KOG1644|consen 42 DQFDAIDLT--------DNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLAS 111 (233)
T ss_pred cccceeccc--------ccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhcc
Confidence 345556666 66665554 3556666666666 33 6665444443 3446666666665 554422 2455
Q ss_pred ccccceEEecCcccccccc----cCCCccccccCCceEe
Q 037953 199 LINLRHLIFTEDLLEYMPK----GIEKLTSLRTLSEFVV 233 (625)
Q Consensus 199 L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~~~~~ 233 (625)
+++|++|.+-.|..+.-+. -+.++++|+.|+...+
T Consensus 112 ~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 6666666664444443321 2455666666665444
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.99 E-value=0.0069 Score=57.72 Aligned_cols=116 Identities=20% Similarity=0.216 Sum_probs=60.2
Q ss_pred hccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccch----hhhh-------cccccccccce
Q 037953 91 IFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQT----NEIL-------NGVEKLIHLRY 159 (625)
Q Consensus 91 ~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l----~~lp-------~~~~~L~~L~~ 159 (625)
+..+..+..++||+|... ......+...+.+-++|++.+++ .-.. .++| ..+-++++|+.
T Consensus 26 l~~~d~~~evdLSGNtig-tEA~e~l~~~ia~~~~L~vvnfs--------d~ftgr~kde~~~~L~~Ll~aLlkcp~l~~ 96 (388)
T COG5238 26 LEMMDELVEVDLSGNTIG-TEAMEELCNVIANVRNLRVVNFS--------DAFTGRDKDELYSNLVMLLKALLKCPRLQK 96 (388)
T ss_pred HHhhcceeEEeccCCccc-HHHHHHHHHHHhhhcceeEeehh--------hhhhcccHHHHHHHHHHHHHHHhcCCccee
Confidence 334555666666665311 11111111445555666666666 2221 1222 24455667777
Q ss_pred ecC--CC-CCCCc----hhhcCCCCCceEeecCCCCCCccccc-cc-------------cccccceEEecCccccccc
Q 037953 160 LKL--NL-VGDLP----EKCCELLNLQTLELENSSHFKRFPQG-IG-------------KLINLRHLIFTEDLLEYMP 216 (625)
Q Consensus 160 L~L--~~-l~~lP----~~i~~L~~L~~L~L~~~~~l~~lp~~-l~-------------~L~~L~~L~l~~~~l~~lp 216 (625)
.+| |- -...| +-|+.-+.|.+|.+++|. ++-+..+ |+ .-+.|+....+.|.+..-|
T Consensus 97 v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs 173 (388)
T COG5238 97 VDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGS 173 (388)
T ss_pred eeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCc
Confidence 777 33 23333 346677889999999887 6654322 22 2345666666555555443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.98 E-value=0.0027 Score=60.32 Aligned_cols=83 Identities=27% Similarity=0.269 Sum_probs=40.8
Q ss_pred cccccccceecC--C--C-CCCCchhhcCCCCCceEeecCCCCCCccc--cccccccccceEEecCcccccccc----cC
Q 037953 151 VEKLIHLRYLKL--N--L-VGDLPEKCCELLNLQTLELENSSHFKRFP--QGIGKLINLRHLIFTEDLLEYMPK----GI 219 (625)
Q Consensus 151 ~~~L~~L~~L~L--~--~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp--~~l~~L~~L~~L~l~~~~l~~lp~----~i 219 (625)
+-.|++|++|.+ | . ...++-...++++|++|++++|+ ++.+- +.+.++.+|..|+++++..+.+-. .+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 334556666666 3 1 33444444555667777777666 44321 124455566666664444333211 12
Q ss_pred CCccccccCCceEec
Q 037953 220 EKLTSLRTLSEFVVA 234 (625)
Q Consensus 220 ~~L~~L~~L~~~~~~ 234 (625)
.-+++|..|+...+.
T Consensus 140 ~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDVD 154 (260)
T ss_pred HHhhhhccccccccC
Confidence 234555555554443
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.75 E-value=0.0017 Score=61.98 Aligned_cols=32 Identities=13% Similarity=-0.194 Sum_probs=13.6
Q ss_pred ceEEEEEEcCCCCcchhhhccCCcceEEEeecc
Q 037953 73 KLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYW 105 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~ 105 (625)
+++.|+.+++++..+.- ..+++.|++|.|+-|
T Consensus 20 ~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvN 51 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVN 51 (388)
T ss_pred HhhhhcccCCCccHHHH-HHhcccceeEEeecc
Confidence 44444444444433221 133444444444443
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.64 E-value=0.0047 Score=35.08 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=13.8
Q ss_pred CCceEeecCCCCCCcccccccc
Q 037953 177 NLQTLELENSSHFKRFPQGIGK 198 (625)
Q Consensus 177 ~L~~L~L~~~~~l~~lp~~l~~ 198 (625)
+|++||+++|. ++.+|.+|++
T Consensus 1 ~L~~Ldls~n~-l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNN-LTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSE-ESEEGTTTTT
T ss_pred CccEEECCCCc-CEeCChhhcC
Confidence 46777777775 6677766554
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.53 E-value=0.00092 Score=72.56 Aligned_cols=140 Identities=21% Similarity=0.266 Sum_probs=85.8
Q ss_pred CCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCC-CCCCCCC-----CCCCCCCcceeeccccccceeeCccCC
Q 037953 322 WPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNC-PTCEIMP-----PLGQLPSLEILLIKDMTSVERVGDESL 395 (625)
Q Consensus 322 ~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c-~~l~~l~-----~l~~l~~L~~L~L~~~~~l~~l~~~~~ 395 (625)
..++.|+.|.+.++........-.....+++|+.|++++| ......+ ....+++|+.|+++.|..++...-...
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3478899999988866552000234457899999999873 3333222 234568899999988876443321111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCc--CCcCCCCCCCCCEEE
Q 037953 396 GIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKS--LPDQLLQSSTLKTLR 473 (625)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~ 473 (625)
...+++|+.|.+..|..++.-.+... ...+++|++|++++|..++. +.....++++|+.|.
T Consensus 265 ----------------~~~c~~L~~L~l~~c~~lt~~gl~~i-~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~ 327 (482)
T KOG1947|consen 265 ----------------ASRCPNLETLSLSNCSNLTDEGLVSI-AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELK 327 (482)
T ss_pred ----------------HhhCCCcceEccCCCCccchhHHHHH-HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhh
Confidence 33488999999888876433322111 23688899999999988744 333334456555555
Q ss_pred EecCc
Q 037953 474 INRCR 478 (625)
Q Consensus 474 l~~c~ 478 (625)
+..++
T Consensus 328 ~~~~~ 332 (482)
T KOG1947|consen 328 LLSLN 332 (482)
T ss_pred hhhcC
Confidence 44443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.002 Score=61.53 Aligned_cols=99 Identities=22% Similarity=0.263 Sum_probs=76.3
Q ss_pred cCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC--CCCCCCch
Q 037953 93 NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL--NLVGDLPE 170 (625)
Q Consensus 93 ~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L--~~l~~lP~ 170 (625)
.+.+.+.|++-+|. +.++ ....+|+.|++|.|| =|.+..+. .+..+++|+.|+| |.|.++-+
T Consensus 17 dl~~vkKLNcwg~~--L~DI-----sic~kMp~lEVLsLS--------vNkIssL~-pl~rCtrLkElYLRkN~I~sldE 80 (388)
T KOG2123|consen 17 DLENVKKLNCWGCG--LDDI-----SICEKMPLLEVLSLS--------VNKISSLA-PLQRCTRLKELYLRKNCIESLDE 80 (388)
T ss_pred HHHHhhhhcccCCC--ccHH-----HHHHhcccceeEEee--------ccccccch-hHHHHHHHHHHHHHhcccccHHH
Confidence 45678889988886 2332 457899999999999 88888884 5899999999999 55777743
Q ss_pred --hhcCCCCCceEeecCCCCCCccccc-----cccccccceEEe
Q 037953 171 --KCCELLNLQTLELENSSHFKRFPQG-----IGKLINLRHLIF 207 (625)
Q Consensus 171 --~i~~L~~L~~L~L~~~~~l~~lp~~-----l~~L~~L~~L~l 207 (625)
-+.++++|+.|-|..|.--++-+.. +.-|++|+.||=
T Consensus 81 L~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 81 LEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 3678999999999888744444332 677889998874
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.29 E-value=0.0084 Score=57.07 Aligned_cols=113 Identities=20% Similarity=0.126 Sum_probs=58.0
Q ss_pred CceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhccc
Q 037953 72 EKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGV 151 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~ 151 (625)
.++.++++.+.....+ ..+..+++|+.|.++.|.......++ -....+++|++|+|+ +|.+..+ +
T Consensus 43 ~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~---vl~e~~P~l~~l~ls--------~Nki~~l-s-- 107 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLE---VLAEKAPNLKVLNLS--------GNKIKDL-S-- 107 (260)
T ss_pred cchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccce---ehhhhCCceeEEeec--------CCccccc-c--
Confidence 3444555444333222 23455666666666665333344444 334455666666666 5554432 1
Q ss_pred ccccccceecCCCCCCCchhhcCCCCCceEeecCCCCCCcccc----ccccccccceEEecCccccccc
Q 037953 152 EKLIHLRYLKLNLVGDLPEKCCELLNLQTLELENSSHFKRFPQ----GIGKLINLRHLIFTEDLLEYMP 216 (625)
Q Consensus 152 ~~L~~L~~L~L~~l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~----~l~~L~~L~~L~l~~~~l~~lp 216 (625)
++ ..+..+.+|..||+.+|. ...+-. .+.-+++|++||-....-.+.|
T Consensus 108 ---------------tl-~pl~~l~nL~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~ 159 (260)
T KOG2739|consen 108 ---------------TL-RPLKELENLKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVDGEEAP 159 (260)
T ss_pred ---------------cc-chhhhhcchhhhhcccCC-ccccccHHHHHHHHhhhhccccccccCCcccc
Confidence 11 234555667777777776 333321 1555677888877333333444
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.55 E-value=0.016 Score=32.88 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=16.0
Q ss_pred ceeEEEeecCCCccccccchhhhhcccccc
Q 037953 125 CLRALRIEGTDNWELEEDQTNEILNGVEKL 154 (625)
Q Consensus 125 ~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L 154 (625)
+|++|||+ +|.++.+|++|++|
T Consensus 1 ~L~~Ldls--------~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLS--------GNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEET--------SSEESEEGTTTTT-
T ss_pred CccEEECC--------CCcCEeCChhhcCC
Confidence 47888888 77777888766553
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.47 E-value=0.051 Score=46.99 Aligned_cols=100 Identities=13% Similarity=0.270 Sum_probs=38.6
Q ss_pred hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-ccccccccceecC-CCCCC
Q 037953 90 SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHLRYLKL-NLVGD 167 (625)
Q Consensus 90 ~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L~~L~L-~~l~~ 167 (625)
.|.++++|+.+.+... ....-. ..|..+++|+.+.+. ++ +..++. .|..+.+|+.+.+ +.+..
T Consensus 7 ~F~~~~~l~~i~~~~~---~~~I~~---~~F~~~~~l~~i~~~--------~~-~~~i~~~~F~~~~~l~~i~~~~~~~~ 71 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT---IKKIGE---NAFSNCTSLKSINFP--------NN-LTSIGDNAFSNCKSLESITFPNNLKS 71 (129)
T ss_dssp TTTT-TT--EEEETST-----EE-T---TTTTT-TT-SEEEES--------ST-TSCE-TTTTTT-TT-EEEEETSTT-E
T ss_pred HHhCCCCCCEEEECCC---eeEeCh---hhccccccccccccc--------cc-ccccceeeeecccccccccccccccc
Confidence 3445556666665532 112222 445666666666665 42 344432 2555555555555 33333
Q ss_pred Cchh-hcCCCCCceEeecCCCCCCccccc-cccccccceEEe
Q 037953 168 LPEK-CCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIF 207 (625)
Q Consensus 168 lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l 207 (625)
++.. +..+++|+.+++..+ +..++.. +.+. +|+.+.+
T Consensus 72 i~~~~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~ 110 (129)
T PF13306_consen 72 IGDNAFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINI 110 (129)
T ss_dssp E-TTTTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-
T ss_pred cccccccccccccccccCcc--ccEEchhhhcCC-CceEEEE
Confidence 3332 334556666665432 3344333 4443 5555554
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.72 E-value=0.047 Score=28.71 Aligned_cols=17 Identities=41% Similarity=0.714 Sum_probs=9.2
Q ss_pred CCCceEeecCCCCCCccc
Q 037953 176 LNLQTLELENSSHFKRFP 193 (625)
Q Consensus 176 ~~L~~L~L~~~~~l~~lp 193 (625)
++|+.|++++|+ ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 367777777777 76665
No 73
>KOG0693 consensus Myo-inositol-1-phosphate synthase [Lipid transport and metabolism]
Probab=93.29 E-value=0.038 Score=54.28 Aligned_cols=45 Identities=49% Similarity=0.810 Sum_probs=39.8
Q ss_pred eeEEEeeccccccCCccccccCCCCCCcccchh----cccchhhhhhcc
Q 037953 578 GFFVTFESILPKVNSDDIAFGGRHTSDMNLAEA----KVLDIDFIAEIY 622 (625)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 622 (625)
.+|+.|-+++|-++..|++|.|--.+||+++|| ||+|+|.-..++
T Consensus 120 eiy~Pfk~llPmv~Pnd~v~~GWDIs~~nL~eAM~RakVld~~LQ~ql~ 168 (512)
T KOG0693|consen 120 EIYAPFKSLLPMVSPNDLVFSGWDISDMNLAEAMARAKVLDIDLQKQLR 168 (512)
T ss_pred EEEeEHHHhCCccCccceEEccccCCCCcHHHHHhhhhccCHHHHHHHH
Confidence 468999999999999999999999999999985 899998755544
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.01 E-value=0.016 Score=53.03 Aligned_cols=68 Identities=18% Similarity=0.404 Sum_probs=47.0
Q ss_pred CCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCC-cCCCCCCCCCEEEEecCcch
Q 037953 412 NIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLP-DQLLQSSTLKTLRINRCRVL 480 (625)
Q Consensus 412 ~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~c~~L 480 (625)
+..+++++.|.+.+|..+.+|....-. +-.++|+.|+|++|+.+++-- ..+..+++|+.|.|.+.+..
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~-~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLG-GLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhc-ccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 456778888888888888887654321 146888888888888887621 23455777888777776543
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.53 E-value=0.01 Score=55.23 Aligned_cols=84 Identities=14% Similarity=-0.003 Sum_probs=56.2
Q ss_pred hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCC
Q 037953 90 SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGD 167 (625)
Q Consensus 90 ~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~ 167 (625)
.+..+.....||++.|+ ...+. .-|+.++.|..|+++ .|.+..+|..++++..++.+++ ++ ...
T Consensus 37 ei~~~kr~tvld~~s~r---~vn~~---~n~s~~t~~~rl~~s--------knq~~~~~~d~~q~~e~~~~~~~~n~~~~ 102 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNR---LVNLG---KNFSILTRLVRLDLS--------KNQIKFLPKDAKQQRETVNAASHKNNHSQ 102 (326)
T ss_pred hhhccceeeeehhhhhH---HHhhc---cchHHHHHHHHHhcc--------HhhHhhChhhHHHHHHHHHHHhhccchhh
Confidence 34455667777777765 22222 446666777777777 7777777777777777777777 44 777
Q ss_pred CchhhcCCCCCceEeecCCC
Q 037953 168 LPEKCCELLNLQTLELENSS 187 (625)
Q Consensus 168 lP~~i~~L~~L~~L~L~~~~ 187 (625)
.|.+.+.+++++++++.++.
T Consensus 103 ~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 103 QPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred CCccccccCCcchhhhccCc
Confidence 77777777777777777766
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.46 E-value=0.26 Score=42.48 Aligned_cols=113 Identities=11% Similarity=0.182 Sum_probs=58.8
Q ss_pred CceEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-
Q 037953 72 EKLRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN- 149 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~- 149 (625)
.+++.+.+.. ....+. ..|..+++|+.+.+..+ ...... ..|.+++.|+.+.+. + .+..++.
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~---~~~i~~---~~F~~~~~l~~i~~~--------~-~~~~i~~~ 75 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN---LTSIGD---NAFSNCKSLESITFP--------N-NLKSIGDN 75 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST---TSCE-T---TTTTT-TT-EEEEET--------S-TT-EE-TT
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc---ccccce---eeeeccccccccccc--------c-cccccccc
Confidence 4677777753 455554 36788889999999874 223223 668999899999998 5 4444443
Q ss_pred ccccccccceecC-CCCCCCchh-hcCCCCCceEeecCCCCCCccccc-cccccccc
Q 037953 150 GVEKLIHLRYLKL-NLVGDLPEK-CCELLNLQTLELENSSHFKRFPQG-IGKLINLR 203 (625)
Q Consensus 150 ~~~~L~~L~~L~L-~~l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~ 203 (625)
.|..+.+|+.+++ .++..++.. +.+. +|+.+.+..+ +..++.. |.++++|+
T Consensus 76 ~F~~~~~l~~i~~~~~~~~i~~~~f~~~-~l~~i~~~~~--~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 76 AFSNCTNLKNIDIPSNITEIGSSSFSNC-NLKEINIPSN--ITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTTT-TTECEEEETTT-BEEHTTTTTT--T--EEE-TTB---SS----GGG------
T ss_pred cccccccccccccCccccEEchhhhcCC-CceEEEECCC--ccEECCccccccccCC
Confidence 4777999999999 556666654 5555 8998888763 5556554 66666653
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.24 E-value=0.016 Score=54.08 Aligned_cols=85 Identities=12% Similarity=0.080 Sum_probs=72.9
Q ss_pred HHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC--CCCCCCchhhcCCCCCceEeecCCCCCCccccc
Q 037953 118 GIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL--NLVGDLPEKCCELLNLQTLELENSSHFKRFPQG 195 (625)
Q Consensus 118 ~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L--~~l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~ 195 (625)
..+...+..++||++ .|++..+-..|+-++.|..|++ +.+..+|+.++.+..++.+++..|. ....|.+
T Consensus 36 ~ei~~~kr~tvld~~--------s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s 106 (326)
T KOG0473|consen 36 REIASFKRVTVLDLS--------SNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKS 106 (326)
T ss_pred hhhhccceeeeehhh--------hhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCcc
Confidence 446778899999999 8888888777888999999999 3399999999999999999988887 8889999
Q ss_pred cccccccceEEecCcc
Q 037953 196 IGKLINLRHLIFTEDL 211 (625)
Q Consensus 196 l~~L~~L~~L~l~~~~ 211 (625)
++++++++++++..+.
T Consensus 107 ~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 107 QKKEPHPKKNEQKKTE 122 (326)
T ss_pred ccccCCcchhhhccCc
Confidence 9999999999985443
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.91 E-value=0.19 Score=26.36 Aligned_cols=8 Identities=38% Similarity=0.592 Sum_probs=4.7
Q ss_pred ceeEEEee
Q 037953 125 CLRALRIE 132 (625)
Q Consensus 125 ~Lr~L~Ls 132 (625)
+|+.|+++
T Consensus 2 ~L~~L~l~ 9 (17)
T PF13504_consen 2 NLRTLDLS 9 (17)
T ss_dssp T-SEEEET
T ss_pred ccCEEECC
Confidence 56666666
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.46 E-value=0.35 Score=28.50 Aligned_cols=20 Identities=40% Similarity=0.743 Sum_probs=12.6
Q ss_pred CCCCceEeecCCCCCCccccc
Q 037953 175 LLNLQTLELENSSHFKRFPQG 195 (625)
Q Consensus 175 L~~L~~L~L~~~~~l~~lp~~ 195 (625)
|++|++|+|++|. +..+|.+
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHH
Confidence 3556666666666 6666654
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.46 E-value=0.35 Score=28.50 Aligned_cols=20 Identities=40% Similarity=0.743 Sum_probs=12.6
Q ss_pred CCCCceEeecCCCCCCccccc
Q 037953 175 LLNLQTLELENSSHFKRFPQG 195 (625)
Q Consensus 175 L~~L~~L~L~~~~~l~~lp~~ 195 (625)
|++|++|+|++|. +..+|.+
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHH
Confidence 3556666666666 6666654
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.49 E-value=0.094 Score=48.13 Aligned_cols=61 Identities=16% Similarity=0.263 Sum_probs=42.4
Q ss_pred cCCCccEEEEecCCCCCcCC--cCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEec
Q 037953 441 IMPQINSLSIYGCHKLKSLP--DQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYE 501 (625)
Q Consensus 441 ~l~~L~~L~l~~c~~l~~lp--~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~ 501 (625)
.+++++.|.+.+|..+...- ...+-.++|+.|+|++|+.+++.-...+.++++++.+.+.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 67889999999998887631 11123689999999999999886533444555555554443
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.57 E-value=0.58 Score=27.53 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.4
Q ss_pred ccccceEEecCcccccccccC
Q 037953 199 LINLRHLIFTEDLLEYMPKGI 219 (625)
Q Consensus 199 L~~L~~L~l~~~~l~~lp~~i 219 (625)
|++|++|++++|.++.+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 578999999999999998764
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.57 E-value=0.58 Score=27.53 Aligned_cols=21 Identities=38% Similarity=0.594 Sum_probs=18.4
Q ss_pred ccccceEEecCcccccccccC
Q 037953 199 LINLRHLIFTEDLLEYMPKGI 219 (625)
Q Consensus 199 L~~L~~L~l~~~~l~~lp~~i 219 (625)
|++|++|++++|.++.+|.+.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 578999999999999998764
No 84
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=76.64 E-value=1.3 Score=26.14 Aligned_cols=18 Identities=17% Similarity=0.536 Sum_probs=12.9
Q ss_pred CCCCCEEEEecCcchhhc
Q 037953 466 SSTLKTLRINRCRVLEEH 483 (625)
Q Consensus 466 l~~L~~L~l~~c~~L~~~ 483 (625)
+++|++|++++|+.+++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 367788888888777653
No 85
>PF14162 YozD: YozD-like protein
Probab=73.67 E-value=3.4 Score=28.37 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhhCCCCcc
Q 037953 3 MEMIAEGYFDYLATRSLFQE 22 (625)
Q Consensus 3 ~e~~g~~~~~~L~~~sll~~ 22 (625)
-|++|+-+|.+|+.||++-.
T Consensus 10 TEEIAefFy~eL~kRGyvP~ 29 (57)
T PF14162_consen 10 TEEIAEFFYHELVKRGYVPT 29 (57)
T ss_pred HHHHHHHHHHHHHHccCCCc
Confidence 58999999999999999944
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.37 E-value=4.7 Score=23.83 Aligned_cols=17 Identities=24% Similarity=0.614 Sum_probs=10.4
Q ss_pred CCceEeecCCCCCCcccc
Q 037953 177 NLQTLELENSSHFKRFPQ 194 (625)
Q Consensus 177 ~L~~L~L~~~~~l~~lp~ 194 (625)
+|+.|++++|+ ++++|+
T Consensus 3 ~L~~L~vs~N~-Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQ-LTSLPE 19 (26)
T ss_pred ccceeecCCCc-cccCcc
Confidence 45666666666 666654
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=58.84 E-value=7.7 Score=22.96 Aligned_cols=12 Identities=33% Similarity=0.576 Sum_probs=7.0
Q ss_pred CCCceEeecCCC
Q 037953 176 LNLQTLELENSS 187 (625)
Q Consensus 176 ~~L~~L~L~~~~ 187 (625)
++|+.|++++|.
T Consensus 2 ~~L~~L~L~~Nk 13 (26)
T smart00365 2 TNLEELDLSQNK 13 (26)
T ss_pred CccCEEECCCCc
Confidence 455666666655
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=54.95 E-value=0.25 Score=52.93 Aligned_cols=159 Identities=20% Similarity=0.078 Sum_probs=85.5
Q ss_pred eEEEEEEcCCCC-----cchhhhccCCcceEEEeecccCCccccCchhhHHHhcC-CceeEEEeecCCCccccccchhhh
Q 037953 74 LRHLMLVLGYEA-----PSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQL-TCLRALRIEGTDNWELEEDQTNEI 147 (625)
Q Consensus 74 lr~L~l~~~~~~-----~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l-~~Lr~L~Ls~c~~~~~~~~~l~~l 147 (625)
++++++.+|.+. .+-..+...+.|..|++++|... ......+...+... ..|++|++..|.-. +-....+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~-~~g~~~l~~~l~~~~~~l~~L~l~~c~l~---~~g~~~l 164 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG-DEGARLLCEGLRLPQCLLQTLELVSCSLT---SEGAAPL 164 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc-cHhHHHHHhhcccchHHHHHHHhhccccc---ccchHHH
Confidence 667777777662 22345666778888888887522 22222122223332 55677777744321 1112345
Q ss_pred hcccccccccceecC--CCCC-----CCchhh----cCCCCCceEeecCCCCCCcc-----ccccccccc-cceEEecCc
Q 037953 148 LNGVEKLIHLRYLKL--NLVG-----DLPEKC----CELLNLQTLELENSSHFKRF-----PQGIGKLIN-LRHLIFTED 210 (625)
Q Consensus 148 p~~~~~L~~L~~L~L--~~l~-----~lP~~i----~~L~~L~~L~L~~~~~l~~l-----p~~l~~L~~-L~~L~l~~~ 210 (625)
.+.+....+++.+++ |.+. .++..+ ....++++|.+.+|. ++.. -..+...++ +..|++.+|
T Consensus 165 ~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~n 243 (478)
T KOG4308|consen 165 AAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLASN 243 (478)
T ss_pred HHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHhc
Confidence 556666778888888 4332 122233 347778888888887 5421 112334444 666777666
Q ss_pred ccccc-----cccCCCc-cccccCCceEecCCC
Q 037953 211 LLEYM-----PKGIEKL-TSLRTLSEFVVASGG 237 (625)
Q Consensus 211 ~l~~l-----p~~i~~L-~~L~~L~~~~~~~~~ 237 (625)
.+... .+.+..+ ..++++++..++...
T Consensus 244 ~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 244 KLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred CcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence 65432 2233334 455666666555444
No 89
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=45.80 E-value=13 Score=21.17 Aligned_cols=10 Identities=20% Similarity=0.235 Sum_probs=5.7
Q ss_pred CCceeEEEee
Q 037953 123 LTCLRALRIE 132 (625)
Q Consensus 123 l~~Lr~L~Ls 132 (625)
+++|++|+|+
T Consensus 1 ~~~L~~L~l~ 10 (24)
T PF13516_consen 1 NPNLETLDLS 10 (24)
T ss_dssp -TT-SEEE-T
T ss_pred CCCCCEEEcc
Confidence 4678888888
No 90
>PLN02438 inositol-3-phosphate synthase
Probab=43.92 E-value=9 Score=40.55 Aligned_cols=44 Identities=55% Similarity=0.893 Sum_probs=36.3
Q ss_pred EEEeeccccccCCccccccCCCCCCcccchh----cccchhhhhhccc
Q 037953 580 FVTFESILPKVNSDDIAFGGRHTSDMNLAEA----KVLDIDFIAEIYD 623 (625)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 623 (625)
++.|...+|-.+..|+.|||--.++|++++| +|+|.+....+++
T Consensus 122 ~~pf~~~lpl~~p~dlVfGGwDI~~~~l~~a~~ra~VLd~~l~~~v~~ 169 (510)
T PLN02438 122 YAPFKSLLPMVNPNDIVFGGWDISDMNLADAMERAKVLDIDLQKQLRP 169 (510)
T ss_pred ccchhhcCCCCCccceEEecccCCCCCHHHHHHHcCCCCHHHHHHHHH
Confidence 4556777899999999999999999999874 8999887766544
No 91
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=42.96 E-value=17 Score=21.72 Aligned_cols=14 Identities=29% Similarity=0.491 Sum_probs=9.6
Q ss_pred CCCceEeecCCCCCC
Q 037953 176 LNLQTLELENSSHFK 190 (625)
Q Consensus 176 ~~L~~L~L~~~~~l~ 190 (625)
++|++|||++|. ++
T Consensus 2 ~~L~~LdL~~N~-i~ 15 (28)
T smart00368 2 PSLRELDLSNNK-LG 15 (28)
T ss_pred CccCEEECCCCC-CC
Confidence 467777777776 54
No 92
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=30.58 E-value=3.3 Score=44.51 Aligned_cols=156 Identities=18% Similarity=0.119 Sum_probs=86.8
Q ss_pred CCceEEEEEEcCCCCcc-----hhhhccC-CcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccch
Q 037953 71 PEKLRHLMLVLGYEAPS-----LVSIFNA-IKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQT 144 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~-----~~~~~~l-~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l 144 (625)
...+..|++++|.++.. -..+... ..+++|.+..|.....+.-+ +.+.+....+++.++++ .|.+
T Consensus 114 ~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~-l~~~L~~~~~l~~l~l~--------~n~l 184 (478)
T KOG4308|consen 114 LPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAP-LAAVLEKNEHLTELDLS--------LNGL 184 (478)
T ss_pred cccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHH-HHHHHhcccchhHHHHH--------hccc
Confidence 34566688888777411 1223332 55777777777522222211 11556668888888888 4443
Q ss_pred h-----hhhccc----ccccccceecC--CCCCC-----CchhhcCCCC-CceEeecCCCCCCc-----cccccccc-cc
Q 037953 145 N-----EILNGV----EKLIHLRYLKL--NLVGD-----LPEKCCELLN-LQTLELENSSHFKR-----FPQGIGKL-IN 201 (625)
Q Consensus 145 ~-----~lp~~~----~~L~~L~~L~L--~~l~~-----lP~~i~~L~~-L~~L~L~~~~~l~~-----lp~~l~~L-~~ 201 (625)
. .++..+ ....++++|.+ |.++. +-..+..... ++.|++..|. +.+ +.+.+..+ ..
T Consensus 185 ~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d~g~~~L~~~l~~~~~~ 263 (478)
T KOG4308|consen 185 IELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LGDVGVEKLLPCLSVLSET 263 (478)
T ss_pred chhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cchHHHHHHHHHhcccchh
Confidence 1 123333 35778888888 43331 1123444555 6668888877 543 23345555 67
Q ss_pred cceEEecCccccc-----ccccCCCccccccCCceEecCC
Q 037953 202 LRHLIFTEDLLEY-----MPKGIEKLTSLRTLSEFVVASG 236 (625)
Q Consensus 202 L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~~~~~~~~ 236 (625)
++++++..|.++. +...+..+..++.|.+..+...
T Consensus 264 l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 264 LRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 7888886666543 2233445566777776655443
Done!