Query 037953
Match_columns 625
No_of_seqs 553 out of 3409
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 09:55:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037953.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037953hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eco_A Uncharacterized protein 100.0 4.4E-31 1.5E-35 294.5 13.8 376 72-504 81-599 (636)
2 3rgz_A Protein brassinosteroid 100.0 1.2E-30 4E-35 297.7 12.1 389 70-503 198-691 (768)
3 3rgz_A Protein brassinosteroid 100.0 2.2E-30 7.4E-35 295.5 12.5 383 71-502 268-714 (768)
4 3vq2_A TLR4, TOLL-like recepto 100.0 8.3E-29 2.8E-33 275.6 22.8 379 70-501 30-482 (606)
5 4eco_A Uncharacterized protein 100.0 5.9E-29 2E-33 277.3 16.9 342 65-480 199-600 (636)
6 4ecn_A Leucine-rich repeat pro 100.0 2.8E-29 9.7E-34 285.1 14.3 198 72-296 323-632 (876)
7 3t6q_A CD180 antigen; protein- 100.0 1.3E-28 4.4E-33 274.0 19.4 405 70-523 31-505 (606)
8 2z63_A TOLL-like receptor 4, v 100.0 1.8E-28 6.1E-33 270.8 19.5 432 70-556 26-535 (570)
9 4ecn_A Leucine-rich repeat pro 100.0 1.2E-28 4E-33 280.1 18.3 346 66-479 442-839 (876)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-28 6.1E-33 272.9 18.7 381 69-504 53-533 (606)
11 3t6q_A CD180 antigen; protein- 100.0 3.7E-28 1.3E-32 270.3 19.6 142 68-223 53-202 (606)
12 1ziw_A TOLL-like receptor 3; i 100.0 7.4E-28 2.5E-32 271.6 20.5 153 70-236 23-184 (680)
13 2z7x_B TOLL-like receptor 1, v 99.9 5.4E-27 1.9E-31 255.9 22.7 378 71-503 20-432 (520)
14 3j0a_A TOLL-like receptor 5; m 99.9 7.6E-26 2.6E-30 260.6 29.3 285 70-393 22-356 (844)
15 2z81_A CD282 antigen, TOLL-lik 99.9 4.6E-27 1.6E-31 258.3 18.2 149 70-231 24-180 (549)
16 2z63_A TOLL-like receptor 4, v 99.9 5.2E-27 1.8E-31 259.1 18.3 379 69-504 49-530 (570)
17 2z7x_B TOLL-like receptor 1, v 99.9 1.7E-26 5.8E-31 252.0 21.2 364 68-505 41-481 (520)
18 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6E-26 2.1E-30 250.0 23.4 377 75-505 34-510 (562)
19 1o6v_A Internalin A; bacterial 99.9 3.3E-26 1.1E-30 246.0 19.5 319 71-479 45-365 (466)
20 2z81_A CD282 antigen, TOLL-lik 99.9 4.1E-26 1.4E-30 250.7 19.4 193 77-297 10-210 (549)
21 1ziw_A TOLL-like receptor 3; i 99.9 2.9E-25 9.8E-30 250.4 26.6 379 70-478 47-515 (680)
22 3v47_A TOLL-like receptor 5B a 99.9 2.6E-26 8.8E-31 246.2 17.1 362 70-481 28-409 (455)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-25 4.1E-30 247.6 20.4 343 70-481 50-511 (562)
24 1o6v_A Internalin A; bacterial 99.9 9.9E-26 3.4E-30 242.3 17.0 321 69-479 65-387 (466)
25 4fmz_A Internalin; leucine ric 99.9 6.3E-26 2.2E-30 234.2 14.7 300 71-478 43-344 (347)
26 3j0a_A TOLL-like receptor 5; m 99.9 6.8E-25 2.3E-29 252.7 23.3 279 68-385 44-373 (844)
27 3bz5_A Internalin-J, INLJ; leu 99.9 2.9E-25 9.8E-30 237.2 17.9 275 120-479 60-351 (457)
28 4fmz_A Internalin; leucine ric 99.9 2.1E-25 7E-30 230.3 14.8 279 69-454 63-344 (347)
29 3v47_A TOLL-like receptor 5B a 99.9 2.6E-25 9E-30 238.3 14.5 366 76-505 14-408 (455)
30 3o6n_A APL1; leucine-rich repe 99.9 6.3E-25 2.1E-29 230.5 16.5 302 93-479 43-351 (390)
31 2id5_A Lingo-1, leucine rich r 99.9 2.4E-24 8.2E-29 232.3 18.7 311 75-480 14-333 (477)
32 3o6n_A APL1; leucine-rich repe 99.9 2.8E-24 9.6E-29 225.5 15.1 300 71-454 44-350 (390)
33 3oja_B Anopheles plasmodium-re 99.9 3.2E-24 1.1E-28 237.7 16.0 303 93-480 49-358 (597)
34 3bz5_A Internalin-J, INLJ; leu 99.9 6.5E-24 2.2E-28 226.7 17.6 302 71-460 41-355 (457)
35 4g8a_A TOLL-like receptor 4; l 99.9 3.6E-23 1.2E-27 231.1 22.6 141 70-224 50-198 (635)
36 2id5_A Lingo-1, leucine rich r 99.9 2.6E-23 8.9E-28 224.2 19.9 312 98-505 14-333 (477)
37 3oja_B Anopheles plasmodium-re 99.9 1.2E-23 4E-28 233.1 13.1 300 71-454 50-356 (597)
38 1jl5_A Outer protein YOPM; leu 99.9 1.5E-23 5.2E-28 223.6 12.8 182 71-294 10-206 (454)
39 4fcg_A Uncharacterized protein 99.9 1.3E-22 4.5E-27 207.2 17.0 229 122-477 79-311 (328)
40 1ogq_A PGIP-2, polygalacturona 99.9 2.1E-23 7.1E-28 211.8 10.7 246 72-389 50-306 (313)
41 1xku_A Decorin; proteoglycan, 99.9 4.1E-22 1.4E-26 204.0 15.7 242 73-393 32-281 (330)
42 4fcg_A Uncharacterized protein 99.9 2E-22 6.9E-27 205.8 13.1 220 94-384 80-311 (328)
43 2ft3_A Biglycan; proteoglycan, 99.9 3.1E-22 1E-26 205.2 13.3 239 73-391 34-280 (332)
44 2ft3_A Biglycan; proteoglycan, 99.9 4.4E-22 1.5E-26 204.0 13.1 239 70-385 52-305 (332)
45 1jl5_A Outer protein YOPM; leu 99.9 1.4E-21 4.8E-26 208.4 16.7 295 74-479 73-369 (454)
46 1xku_A Decorin; proteoglycan, 99.9 2E-21 6.8E-26 198.9 14.5 286 96-477 32-329 (330)
47 4g8a_A TOLL-like receptor 4; l 99.9 9.6E-21 3.3E-25 211.4 21.3 141 79-235 38-185 (635)
48 1ogq_A PGIP-2, polygalacturona 99.9 4.2E-22 1.4E-26 202.2 8.3 243 95-428 50-303 (313)
49 1z7x_W Ribonuclease inhibitor; 99.8 8.1E-23 2.8E-27 219.3 -5.9 355 71-479 2-410 (461)
50 3ogk_B Coronatine-insensitive 99.8 2.9E-21 9.8E-26 214.1 4.1 377 70-504 110-525 (592)
51 2z80_A TOLL-like receptor 2, v 99.8 6.3E-20 2.2E-24 189.6 13.9 262 77-385 36-312 (353)
52 3ogk_B Coronatine-insensitive 99.8 1E-20 3.4E-25 209.7 5.9 397 70-524 71-519 (592)
53 3g06_A SSPH2 (leucine-rich rep 99.8 4.3E-19 1.5E-23 195.2 18.8 259 73-484 41-301 (622)
54 2z80_A TOLL-like receptor 2, v 99.8 5.4E-20 1.9E-24 190.1 8.9 256 70-364 50-314 (353)
55 2z66_A Variable lymphocyte rec 99.8 3E-19 1E-23 180.7 9.3 239 76-385 11-259 (306)
56 3zyi_A Leucine-rich repeat-con 99.8 3.3E-19 1.1E-23 190.6 9.8 238 73-385 55-301 (452)
57 3zyj_A Leucine-rich repeat-con 99.8 3.2E-19 1.1E-23 190.0 9.7 238 73-385 44-290 (440)
58 2z66_A Variable lymphocyte rec 99.8 3.8E-19 1.3E-23 179.8 9.8 238 98-426 10-258 (306)
59 2p1m_B Transport inhibitor res 99.8 9.1E-21 3.1E-25 210.1 -3.9 380 72-504 105-518 (594)
60 3g06_A SSPH2 (leucine-rich rep 99.8 1.5E-17 5.1E-22 182.9 20.4 256 124-505 40-297 (622)
61 1ozn_A Reticulon 4 receptor; N 99.7 4.7E-19 1.6E-23 177.3 5.9 141 75-231 14-161 (285)
62 3o53_A Protein LRIM1, AGAP0063 99.7 3.2E-20 1.1E-24 188.7 -2.7 232 74-385 12-248 (317)
63 3zyi_A Leucine-rich repeat-con 99.7 3.1E-18 1.1E-22 183.0 12.1 237 97-408 56-300 (452)
64 3o53_A Protein LRIM1, AGAP0063 99.7 1.1E-19 3.7E-24 184.8 0.6 268 118-482 28-301 (317)
65 1wwl_A Monocyte differentiatio 99.7 1.4E-19 4.9E-24 183.4 0.5 239 74-385 45-307 (312)
66 1ozn_A Reticulon 4 receptor; N 99.7 1.2E-18 4.1E-23 174.3 7.0 215 98-385 14-236 (285)
67 3zyj_A Leucine-rich repeat-con 99.7 1.7E-18 5.7E-23 184.5 8.4 152 69-234 61-218 (440)
68 1z7x_W Ribonuclease inhibitor; 99.7 2.2E-20 7.5E-25 200.3 -7.9 353 71-479 27-439 (461)
69 2p1m_B Transport inhibitor res 99.7 1.2E-19 4E-24 201.2 -2.7 360 71-479 129-518 (594)
70 1wwl_A Monocyte differentiatio 99.7 9.8E-19 3.4E-23 177.3 3.9 69 322-391 198-269 (312)
71 3oja_A Leucine-rich immune mol 99.7 2.3E-18 8E-23 185.3 1.8 129 84-233 19-154 (487)
72 1h6u_A Internalin H; cell adhe 99.7 1.1E-16 3.7E-21 161.8 10.4 66 321-392 169-234 (308)
73 3oja_A Leucine-rich immune mol 99.7 7.4E-17 2.5E-21 173.6 9.7 217 118-386 24-249 (487)
74 2z62_A TOLL-like receptor 4, v 99.7 1.1E-16 3.8E-21 159.1 8.8 131 85-231 20-157 (276)
75 2xwt_C Thyrotropin receptor; s 99.7 1E-15 3.6E-20 148.6 15.3 212 158-479 14-238 (239)
76 1h6u_A Internalin H; cell adhe 99.6 5.7E-16 2E-20 156.4 12.7 188 71-295 40-229 (308)
77 2ast_B S-phase kinase-associat 99.6 3.4E-17 1.2E-21 167.7 3.5 89 318-426 187-282 (336)
78 2ca6_A RAN GTPase-activating p 99.6 2.8E-17 9.7E-22 171.8 -0.1 146 84-232 21-196 (386)
79 2z62_A TOLL-like receptor 4, v 99.6 3.9E-16 1.3E-20 155.1 8.0 198 70-294 26-235 (276)
80 2o6q_A Variable lymphocyte rec 99.6 3.8E-16 1.3E-20 154.7 7.6 194 73-294 17-216 (270)
81 4ay9_X Follicle-stimulating ho 99.6 3.6E-15 1.2E-19 153.6 15.0 62 326-391 155-218 (350)
82 1p9a_G Platelet glycoprotein I 99.6 6.8E-16 2.3E-20 154.4 8.2 122 91-230 6-131 (290)
83 3rfs_A Internalin B, repeat mo 99.6 1.2E-15 4.1E-20 151.3 9.6 65 321-393 177-241 (272)
84 1p9a_G Platelet glycoprotein I 99.6 8.9E-16 3E-20 153.5 8.2 194 71-294 9-206 (290)
85 3rfs_A Internalin B, repeat mo 99.6 7.8E-16 2.7E-20 152.6 7.4 101 120-230 59-164 (272)
86 2ast_B S-phase kinase-associat 99.6 7.6E-17 2.6E-21 165.1 0.1 145 72-232 47-204 (336)
87 2ca6_A RAN GTPase-activating p 99.6 1.6E-16 5.6E-21 166.0 1.0 245 110-385 21-314 (386)
88 2o6q_A Variable lymphocyte rec 99.6 3.6E-15 1.2E-19 147.7 10.5 117 96-229 17-139 (270)
89 2xwt_C Thyrotropin receptor; s 99.6 1.2E-15 4.1E-20 148.1 6.9 196 70-293 29-236 (239)
90 4ay9_X Follicle-stimulating ho 99.6 1.5E-14 5.1E-19 148.9 14.8 236 158-476 12-255 (350)
91 4glp_A Monocyte differentiatio 99.6 4.8E-15 1.7E-19 149.9 9.9 224 94-385 63-305 (310)
92 4ezg_A Putative uncharacterize 99.5 1.7E-14 5.9E-19 135.5 10.3 146 71-234 43-192 (197)
93 3m19_A Variable lymphocyte rec 99.5 2.7E-14 9.1E-19 139.7 9.6 150 71-234 34-190 (251)
94 3m19_A Variable lymphocyte rec 99.5 2.4E-14 8.2E-19 140.0 9.0 147 72-234 14-166 (251)
95 1h6t_A Internalin B; cell adhe 99.5 6.7E-14 2.3E-18 140.0 11.5 138 72-230 46-185 (291)
96 3e6j_A Variable lymphocyte rec 99.5 6.7E-14 2.3E-18 134.7 8.7 145 75-235 22-171 (229)
97 1m9s_A Internalin B; cell inva 99.5 2.7E-14 9.4E-19 156.7 5.9 59 322-385 150-208 (605)
98 3goz_A Leucine-rich repeat-con 99.5 2.2E-14 7.5E-19 148.4 4.4 251 78-385 4-295 (362)
99 4b8c_D Glucose-repressible alc 99.4 1E-13 3.6E-18 156.0 9.6 155 70-236 171-329 (727)
100 3goz_A Leucine-rich repeat-con 99.4 6.7E-14 2.3E-18 144.7 6.4 155 65-233 15-206 (362)
101 2v9t_B SLIT homolog 2 protein 99.4 1.3E-13 4.6E-18 131.7 8.1 143 76-234 15-163 (220)
102 1h6t_A Internalin B; cell adhe 99.4 3.2E-13 1.1E-17 135.0 11.2 148 69-237 65-214 (291)
103 2ell_A Acidic leucine-rich nuc 99.4 1E-13 3.5E-18 126.6 6.5 131 71-217 23-164 (168)
104 2v70_A SLIT-2, SLIT homolog 2 99.4 3.2E-13 1.1E-17 129.1 8.9 146 75-235 14-165 (220)
105 1xeu_A Internalin C; cellular 99.4 6E-13 2.1E-17 130.9 10.6 145 71-237 40-186 (263)
106 2o6s_A Variable lymphocyte rec 99.4 3.1E-13 1.1E-17 128.0 8.1 126 71-210 27-158 (208)
107 4glp_A Monocyte differentiatio 99.4 5.7E-13 2E-17 134.6 10.4 195 72-294 91-305 (310)
108 1m9s_A Internalin B; cell inva 99.4 3.6E-13 1.2E-17 147.9 9.5 141 72-233 43-185 (605)
109 2ell_A Acidic leucine-rich nuc 99.4 3.9E-13 1.3E-17 122.6 7.7 130 93-237 22-161 (168)
110 3e6j_A Variable lymphocyte rec 99.4 7.1E-13 2.4E-17 127.5 9.4 131 70-214 38-173 (229)
111 1xeu_A Internalin C; cellular 99.4 1.3E-13 4.6E-18 135.6 4.1 131 78-230 25-157 (263)
112 3cvr_A Invasion plasmid antige 99.4 2.3E-13 7.8E-18 147.8 6.2 34 327-363 209-242 (571)
113 3cvr_A Invasion plasmid antige 99.4 2.2E-13 7.5E-18 148.0 5.8 180 125-393 60-249 (571)
114 1dce_A Protein (RAB geranylger 99.4 3.8E-15 1.3E-19 162.6 -8.2 173 71-264 348-542 (567)
115 2o6s_A Variable lymphocyte rec 99.4 9E-13 3.1E-17 124.8 8.6 143 76-234 11-159 (208)
116 2v9t_B SLIT homolog 2 protein 99.4 9.4E-13 3.2E-17 125.8 8.6 131 70-214 30-166 (220)
117 2je0_A Acidic leucine-rich nuc 99.4 3.4E-13 1.2E-17 120.4 5.2 123 94-231 16-148 (149)
118 4ezg_A Putative uncharacterize 99.3 2.7E-12 9.3E-17 120.4 10.3 130 68-214 62-195 (197)
119 1a9n_A U2A', U2A'; complex (nu 99.3 7.3E-13 2.5E-17 121.8 6.2 128 91-234 15-151 (176)
120 2v70_A SLIT-2, SLIT homolog 2 99.3 1.4E-12 4.9E-17 124.5 8.2 130 70-213 30-166 (220)
121 2xot_A Amphoterin-induced prot 99.3 7.6E-13 2.6E-17 136.7 5.5 126 77-218 23-154 (361)
122 2je0_A Acidic leucine-rich nuc 99.3 7.8E-13 2.7E-17 118.0 3.4 122 71-208 16-148 (149)
123 2xot_A Amphoterin-induced prot 99.3 2.2E-12 7.6E-17 133.1 6.5 141 70-224 37-188 (361)
124 4b8c_D Glucose-repressible alc 99.3 2.7E-12 9.2E-17 144.4 6.1 123 82-219 211-336 (727)
125 1a9n_A U2A', U2A'; complex (nu 99.2 4.9E-12 1.7E-16 116.3 5.0 127 71-214 18-154 (176)
126 3sb4_A Hypothetical leucine ri 99.2 9.6E-11 3.3E-15 119.2 15.1 287 93-473 23-327 (329)
127 1dce_A Protein (RAB geranylger 99.2 1.4E-11 4.8E-16 134.4 9.4 139 85-237 399-547 (567)
128 2wfh_A SLIT homolog 2 protein 99.2 1.9E-11 6.4E-16 114.1 8.6 122 75-213 13-139 (193)
129 1w8a_A SLIT protein; signaling 99.2 1.1E-11 3.6E-16 115.7 6.0 123 75-213 11-139 (192)
130 1ds9_A Outer arm dynein; leuci 99.2 5.3E-13 1.8E-17 125.3 -3.8 140 73-229 24-180 (198)
131 2wfh_A SLIT homolog 2 protein 99.2 4.2E-11 1.4E-15 111.7 7.6 121 98-235 13-138 (193)
132 2o6r_A Variable lymphocyte rec 99.1 6.2E-11 2.1E-15 108.9 8.2 124 75-214 10-138 (177)
133 1w8a_A SLIT protein; signaling 99.1 3.4E-11 1.2E-15 112.3 6.3 123 98-237 11-140 (192)
134 3sb4_A Hypothetical leucine ri 99.1 6.7E-11 2.3E-15 120.3 7.3 282 71-422 24-327 (329)
135 1ds9_A Outer arm dynein; leuci 99.0 2.6E-12 8.9E-17 120.6 -5.9 105 118-233 42-150 (198)
136 2o6r_A Variable lymphocyte rec 99.0 6.4E-10 2.2E-14 102.1 9.0 123 97-236 9-137 (177)
137 2r9u_A Variable lymphocyte rec 99.0 3.1E-10 1.1E-14 103.8 6.1 76 141-217 42-122 (174)
138 2r9u_A Variable lymphocyte rec 99.0 3.6E-10 1.2E-14 103.4 5.4 109 75-199 15-127 (174)
139 3g39_A Variable lymphocyte rec 98.9 1.7E-09 5.8E-14 98.5 7.3 81 124-213 30-115 (170)
140 3g39_A Variable lymphocyte rec 98.9 1E-09 3.5E-14 99.9 4.8 104 75-194 12-119 (170)
141 4fdw_A Leucine rich hypothetic 98.8 2.7E-07 9.1E-12 96.0 18.8 109 344-477 264-380 (401)
142 4fdw_A Leucine rich hypothetic 98.7 1.3E-07 4.3E-12 98.5 13.7 244 94-391 112-361 (401)
143 4fs7_A Uncharacterized protein 98.7 1.4E-07 4.9E-12 98.2 14.0 304 89-477 65-376 (394)
144 2ifg_A High affinity nerve gro 98.6 4.1E-08 1.4E-12 100.4 6.2 91 110-213 21-116 (347)
145 2ifg_A High affinity nerve gro 98.5 1.2E-07 3.9E-12 97.0 7.3 97 77-187 13-114 (347)
146 4fs7_A Uncharacterized protein 98.5 8.1E-07 2.8E-11 92.4 13.7 321 118-523 65-393 (394)
147 3un9_A NLR family member X1; l 98.4 2.6E-08 9E-13 102.6 -1.4 150 71-233 71-249 (372)
148 3un9_A NLR family member X1; l 98.3 1.6E-07 5.5E-12 96.7 2.8 134 71-215 100-254 (372)
149 4gt6_A Cell surface protein; l 98.2 1.9E-05 6.5E-10 82.0 14.8 122 90-228 58-187 (394)
150 4gt6_A Cell surface protein; l 98.1 0.00012 4.1E-09 75.9 19.7 120 73-207 65-189 (394)
151 3e4g_A ATP synthase subunit S, 98.0 1.5E-06 5.1E-11 78.2 1.8 69 412-483 81-155 (176)
152 2ra8_A Uncharacterized protein 98.0 7.4E-06 2.5E-10 83.6 6.7 147 71-234 138-318 (362)
153 1io0_A Tropomodulin; LRR prote 98.0 4.5E-06 1.5E-10 76.7 4.4 117 87-213 28-164 (185)
154 2ra8_A Uncharacterized protein 97.9 5.7E-06 2E-10 84.4 4.8 178 71-265 106-317 (362)
155 3e4g_A ATP synthase subunit S, 97.9 9E-06 3.1E-10 73.1 4.8 86 283-390 61-155 (176)
156 4h09_A Hypothetical leucine ri 97.7 0.00019 6.6E-09 73.9 11.5 78 92-185 43-122 (379)
157 1io0_A Tropomodulin; LRR prote 97.6 1.7E-05 5.8E-10 72.8 2.3 105 118-231 30-159 (185)
158 4h09_A Hypothetical leucine ri 97.6 0.0022 7.6E-08 65.8 18.1 79 118-208 40-121 (379)
159 3rw6_A Nuclear RNA export fact 97.3 0.00013 4.4E-09 70.6 4.3 78 152-231 167-259 (267)
160 3rw6_A Nuclear RNA export fact 97.3 0.00019 6.3E-09 69.5 4.6 104 91-207 137-258 (267)
161 2a5y_B CED-4; apoptosis; HET: 97.2 0.00011 3.7E-09 79.8 2.8 48 2-53 426-473 (549)
162 3sfz_A APAF-1, apoptotic pepti 93.5 0.054 1.9E-06 64.6 5.4 45 4-51 408-452 (1249)
163 3rfe_A Platelet glycoprotein I 92.3 0.17 5.7E-06 42.8 5.3 34 177-211 32-66 (130)
164 1pgv_A TMD-1, tropomodulin TMD 91.8 0.14 4.9E-06 46.5 4.4 112 90-210 36-167 (197)
165 1z6t_A APAF-1, apoptotic prote 87.9 0.47 1.6E-05 51.4 5.5 41 5-48 409-449 (591)
166 3rfe_A Platelet glycoprotein I 87.3 0.35 1.2E-05 40.8 3.1 51 76-133 12-64 (130)
167 1pgv_A TMD-1, tropomodulin TMD 87.2 0.47 1.6E-05 43.1 4.0 82 118-208 35-134 (197)
168 1vt4_I APAF-1 related killer D 80.7 0.79 2.7E-05 52.3 3.1 36 5-45 402-437 (1221)
169 1vko_A Inositol-3-phosphate sy 64.6 2 6.7E-05 44.2 1.1 45 579-623 138-186 (537)
170 1p1j_A Inositol-3-phosphate sy 64.4 1.8 6.3E-05 44.4 0.9 45 579-623 126-174 (533)
171 3qvs_A MIPS, MYO-inositol-1-ph 22.1 17 0.00057 36.3 -0.4 37 586-622 42-87 (392)
No 1
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.97 E-value=4.4e-31 Score=294.48 Aligned_cols=376 Identities=13% Similarity=0.080 Sum_probs=239.9
Q ss_pred CceEEEEEEcCCC-CcchhhhccCCcceEEEeecccC-------------------------------------------
Q 037953 72 EKLRHLMLVLGYE-APSLVSIFNAIKLRSLILFYWIP------------------------------------------- 107 (625)
Q Consensus 72 ~~lr~L~l~~~~~-~~~~~~~~~l~~Lr~L~L~~~~~------------------------------------------- 107 (625)
.+++.|++.++.+ +.+|+++.++++|++|+|++|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 4799999999998 68899999999999999999832
Q ss_pred ---------------------------------CccccCchhhHHHhcCCceeEEEeecCCCccccccchhh--------
Q 037953 108 ---------------------------------NLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE-------- 146 (625)
Q Consensus 108 ---------------------------------~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~-------- 146 (625)
.+.+ +| ..++++++|++|+|+ +|.+..
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip---~~l~~l~~L~~L~Ls--------~n~l~~~~~~~~~~ 228 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VS---KAVMRLTKLRQFYMG--------NSPFVAENICEAWE 228 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC---GGGGGCTTCCEEEEE--------SCCCCGGGBSSSCS
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CC---HHHhcccCCCEEECc--------CCcccccccccccc
Confidence 2223 77 889999999999999 888766
Q ss_pred ----------hhcccc--cccccceecC--CC-CCCCchhhcCCCCCceEeecCCCCCC--ccccccccc------cccc
Q 037953 147 ----------ILNGVE--KLIHLRYLKL--NL-VGDLPEKCCELLNLQTLELENSSHFK--RFPQGIGKL------INLR 203 (625)
Q Consensus 147 ----------lp~~~~--~L~~L~~L~L--~~-l~~lP~~i~~L~~L~~L~L~~~~~l~--~lp~~l~~L------~~L~ 203 (625)
+|..++ ++++|++|+| |. .+.+|..++++++|++|++++|..+. .+|..++++ ++|+
T Consensus 229 ~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~ 308 (636)
T 4eco_A 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQ 308 (636)
T ss_dssp CTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCC
T ss_pred ccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCC
Confidence 999999 9999999999 66 88999999999999999999997344 699998887 9999
Q ss_pred eEEecCcccccccc--cCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCC
Q 037953 204 HLIFTEDLLEYMPK--GIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEK 281 (625)
Q Consensus 204 ~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~ 281 (625)
+|++++|.++.+|. .++++++|++|++..+...+ .++ .+..+++|+ .|.+++.. +. .++..+..
T Consensus 309 ~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g----~ip----~~~~l~~L~-~L~L~~N~----l~-~lp~~l~~ 374 (636)
T 4eco_A 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG----KLP----AFGSEIKLA-SLNLAYNQ----IT-EIPANFCG 374 (636)
T ss_dssp EEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE----ECC----CCEEEEEES-EEECCSSE----EE-ECCTTSEE
T ss_pred EEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc----chh----hhCCCCCCC-EEECCCCc----cc-cccHhhhh
Confidence 99999999999998 89999999999887665442 112 555566666 67766532 22 34455777
Q ss_pred CCC-CCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCC--CCCcEEEEeccCCCcccCCchhhc-------ccc
Q 037953 282 KKN-LVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPP--PNLESLEIAGFRGRKMMLSTNWMA-------SLN 351 (625)
Q Consensus 282 l~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~~~p~~l~-------~l~ 351 (625)
+++ |+.|++++|.++ .++..+... ++|+.|++++|...... |.++. .++
T Consensus 375 l~~~L~~L~Ls~N~l~-------------------~lp~~~~~~~l~~L~~L~Ls~N~l~~~~--p~~l~~~~~~~~~~~ 433 (636)
T 4eco_A 375 FTEQVENLSFAHNKLK-------------------YIPNIFDAKSVSVMSAIDFSYNEIGSVD--GKNFDPLDPTPFKGI 433 (636)
T ss_dssp ECTTCCEEECCSSCCS-------------------SCCSCCCTTCSSCEEEEECCSSCTTTTT--TCSSCTTCSSCCCCC
T ss_pred hcccCcEEEccCCcCc-------------------ccchhhhhcccCccCEEECcCCcCCCcc--hhhhcccccccccCC
Confidence 888 999998888643 122222222 24444444444433311 33333 334
Q ss_pred cccEEEEeCCCCCCCCCC--CCCCCCcceeeccccccceeeCccCCCCC--------CCCCCCCCC-----CCCCCC--C
Q 037953 352 MLKKLRLLNCPTCEIMPP--LGQLPSLEILLIKDMTSVERVGDESLGIA--------NGDHGAPSS-----SSVNNI--A 414 (625)
Q Consensus 352 ~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~~l~~l~~~~~~~~--------~~~~~~~~~-----~~~~~~--~ 414 (625)
+|+.|++++|. +..+|. +..+++|+.|++++|. ++.+|...+... .+..+.++. .+.... .
T Consensus 434 ~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~ 511 (636)
T 4eco_A 434 NVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATT 511 (636)
T ss_dssp CEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTT
T ss_pred CCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhcc
Confidence 44444444432 223332 2234444444444433 333433222110 111111110 011122 5
Q ss_pred CCCCCeeeccCcccccccccCCCCcccCCCccEEEEec------CCCCCcCCcCCCCCCCCCEEEEecCcchhhcccccc
Q 037953 415 FPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYG------CHKLKSLPDQLLQSSTLKTLRINRCRVLEEHFKKDR 488 (625)
Q Consensus 415 l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~------c~~l~~lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~ 488 (625)
+++|+.|+++++. +..++. .+..+++|+.|++++ |...+.+|..+..+++|++|++++|.. +.+| ..+
T Consensus 512 l~~L~~L~Ls~N~-l~~ip~---~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip-~~~ 585 (636)
T 4eco_A 512 LPYLVGIDLSYNS-FSKFPT---QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVN-EKI 585 (636)
T ss_dssp CTTCCEEECCSSC-CSSCCC---GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCC-SCC
T ss_pred CCCcCEEECCCCC-CCCcCh---hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccC-HhH
Confidence 6677777777653 333322 133567777777743 333455676666677777777777755 5555 222
Q ss_pred cccCCCCceEEecCCC
Q 037953 489 SKISHIPDIQIYERGP 504 (625)
Q Consensus 489 ~~l~~l~~l~~~~~~~ 504 (625)
. +++..+.+.++..
T Consensus 586 ~--~~L~~L~Ls~N~l 599 (636)
T 4eco_A 586 T--PNISVLDIKDNPN 599 (636)
T ss_dssp C--TTCCEEECCSCTT
T ss_pred h--CcCCEEECcCCCC
Confidence 2 4555555555433
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=1.2e-30 Score=297.71 Aligned_cols=389 Identities=16% Similarity=0.108 Sum_probs=194.3
Q ss_pred CCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh-hhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN-EIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~-~lp 148 (625)
...++++|++++|.+...++.+.++++|++|++++|. +.+.+| ..++++++|++|+++ +|.+. .+|
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~--l~~~~~---~~l~~l~~L~~L~Ls--------~n~l~~~~~ 264 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNK--LSGDFS---RAISTCTELKLLNIS--------SNQFVGPIP 264 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSC--CCSCHH---HHTTTCSSCCEEECC--------SSCCEESCC
T ss_pred cCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCc--CCCccc---HHHhcCCCCCEEECC--------CCcccCccC
Confidence 3567777777777774433347777788888887754 445566 777777888888777 44432 222
Q ss_pred cccccccccceecC--CC-CCCCchhhcCC-CCCceEeecCCCCCCccccccccccccceEEecCcccc-ccccc-CCCc
Q 037953 149 NGVEKLIHLRYLKL--NL-VGDLPEKCCEL-LNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLE-YMPKG-IEKL 222 (625)
Q Consensus 149 ~~~~~L~~L~~L~L--~~-l~~lP~~i~~L-~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~-~lp~~-i~~L 222 (625)
.. .+++|++|++ |. .+.+|..++++ ++|++|++++|...+.+|..++++++|++|+++.|.+. .+|.. ++++
T Consensus 265 ~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l 342 (768)
T 3rgz_A 265 PL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342 (768)
T ss_dssp CC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTC
T ss_pred cc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcC
Confidence 21 4444555555 22 22445444443 55555555555422244444555555555555444443 44433 4444
Q ss_pred cccccCCceEecCCCCcCCCcccChhccc-c-----------------------ccccccceEEeccCCCCChhHHHHhc
Q 037953 223 TSLRTLSEFVVASGGGRYGSEACKLEGLR-H-----------------------LNHLRGSLKVRGLGNVADVDEVKNAH 278 (625)
Q Consensus 223 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~-~-----------------------L~~L~~~L~l~~~~~~~~~~~~~~~~ 278 (625)
++|++|++..+.... ..+..+..+. + +++|+ .|.+.++ .+.+..+..
T Consensus 343 ~~L~~L~Ls~n~l~~----~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~-~L~L~~n----~l~~~~p~~ 413 (768)
T 3rgz_A 343 RGLKVLDLSFNEFSG----ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ-ELYLQNN----GFTGKIPPT 413 (768)
T ss_dssp TTCCEEECCSSEEEE----CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCC-EEECCSS----EEEEECCGG
T ss_pred CCCCEEeCcCCccCc----cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCcc-EEECCCC----ccccccCHH
Confidence 555544443332211 0111111111 1 22233 3333331 111223334
Q ss_pred cCCCCCCCeEEEEEecccccccCCcccccc------cchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhccccc
Q 037953 279 LEKKKNLVRLILRFKDIDKAVKRWPEAISN------ENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNM 352 (625)
Q Consensus 279 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~ 352 (625)
+..+++|+.|++++|.+++..+..-..... ........++..+..+++|+.|++++|...... |.++..+++
T Consensus 414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~l~~l~~ 491 (768)
T 3rgz_A 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEI--PSGLSNCTN 491 (768)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTT
T ss_pred HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcC--CHHHhcCCC
Confidence 555556666666555432111100000000 000001123333444455555555555444211 555555555
Q ss_pred ccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccc
Q 037953 353 LKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWED 431 (625)
Q Consensus 353 L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~ 431 (625)
|+.|++++|...+.+| +++.+++|++|++++|...+.+|.. +..+++|+.|+++++.-...
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~------------------l~~l~~L~~L~Ls~N~l~g~ 553 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE------------------LGDCRSLIWLDLNTNLFNGT 553 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG------------------GGGCTTCCEEECCSSEEESB
T ss_pred CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH------------------HcCCCCCCEEECCCCccCCc
Confidence 5555555554444444 2455555555555555433344433 45566777777765432111
Q ss_pred ccc-------------------------------------------------------------------CCCCcccCCC
Q 037953 432 WDF-------------------------------------------------------------------RKEDITIMPQ 444 (625)
Q Consensus 432 ~~~-------------------------------------------------------------------~~~~~~~l~~ 444 (625)
++. .+..++.+++
T Consensus 554 ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~ 633 (768)
T 3rgz_A 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633 (768)
T ss_dssp CCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBC
T ss_pred CChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhcccc
Confidence 110 0011334677
Q ss_pred ccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCC
Q 037953 445 INSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERG 503 (625)
Q Consensus 445 L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~ 503 (625)
|+.|++++|...+.+|..++++++|+.|++++|..-..+| ..+..++++..+.+..+.
T Consensus 634 L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip-~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP-DEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp CCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC-GGGGGCTTCCEEECCSSC
T ss_pred ccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC-hHHhCCCCCCEEECCCCc
Confidence 8888888865555788888888888888888887666666 566666677666665543
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=2.2e-30 Score=295.50 Aligned_cols=383 Identities=20% Similarity=0.165 Sum_probs=255.8
Q ss_pred CCceEEEEEEcCCCC-cchhhhccC-CcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh-hh
Q 037953 71 PEKLRHLMLVLGYEA-PSLVSIFNA-IKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN-EI 147 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~-~~~~~~~~l-~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~-~l 147 (625)
.+++++|++.+|.+. .+|..+... ++|++|++++|. +.+.+| ..|+++++|++|+++ +|.+. .+
T Consensus 268 l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~--l~~~~p---~~~~~l~~L~~L~L~--------~n~l~~~i 334 (768)
T 3rgz_A 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNH--FYGAVP---PFFGSCSLLESLALS--------SNNFSGEL 334 (768)
T ss_dssp CTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSE--EEECCC---GGGGGCTTCCEEECC--------SSEEEEEC
T ss_pred cCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCc--CCCccc---hHHhcCCCccEEECC--------CCcccCcC
Confidence 345555555555542 445544442 666666666643 344555 556666666666666 55543 55
Q ss_pred hcc-cccccccceecC--CCC-CCCchhhcCCC-CCceEeecCCCCCCcccccccc--ccccceEEecCcccc-cccccC
Q 037953 148 LNG-VEKLIHLRYLKL--NLV-GDLPEKCCELL-NLQTLELENSSHFKRFPQGIGK--LINLRHLIFTEDLLE-YMPKGI 219 (625)
Q Consensus 148 p~~-~~~L~~L~~L~L--~~l-~~lP~~i~~L~-~L~~L~L~~~~~l~~lp~~l~~--L~~L~~L~l~~~~l~-~lp~~i 219 (625)
|.. ++++++|++|++ |.+ +.+|..+.++. +|++|++++|...+.+|..+.. +++|++|+++.|.+. .+|..+
T Consensus 335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 414 (768)
T 3rgz_A 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414 (768)
T ss_dssp CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence 544 666666666666 333 35666666665 6666666666633345555544 666777777555554 566677
Q ss_pred CCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccc
Q 037953 220 EKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAV 299 (625)
Q Consensus 220 ~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 299 (625)
+++++|+.|++..+.... .....+.++++|+ .|.+.++. ..+..+..+..+++|+.|++++|.++
T Consensus 415 ~~l~~L~~L~Ls~N~l~~-------~~p~~l~~l~~L~-~L~L~~n~----l~~~~p~~~~~l~~L~~L~L~~N~l~--- 479 (768)
T 3rgz_A 415 SNCSELVSLHLSFNYLSG-------TIPSSLGSLSKLR-DLKLWLNM----LEGEIPQELMYVKTLETLILDFNDLT--- 479 (768)
T ss_dssp GGCTTCCEEECCSSEEES-------CCCGGGGGCTTCC-EEECCSSC----CCSCCCGGGGGCTTCCEEECCSSCCC---
T ss_pred hcCCCCCEEECcCCcccC-------cccHHHhcCCCCC-EEECCCCc----ccCcCCHHHcCCCCceEEEecCCccc---
Confidence 777777777766554332 2223344555555 66666533 22334556777888888888877532
Q ss_pred cCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcce
Q 037953 300 KRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEI 378 (625)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~ 378 (625)
+..+..+..+++|+.|++++|...... |.+++.+++|++|++++|...+.+| .++.+++|+.
T Consensus 480 ---------------~~~p~~l~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 480 ---------------GEIPSGLSNCTNLNWISLSNNRLTGEI--PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp ---------------SCCCGGGGGCTTCCEEECCSSCCCSCC--CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred ---------------CcCCHHHhcCCCCCEEEccCCccCCcC--ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence 345667788999999999999877422 9999999999999999988777777 4889999999
Q ss_pred eeccccccceeeCccCCCCCCCCCCCCC----------------------------------------------------
Q 037953 379 LLIKDMTSVERVGDESLGIANGDHGAPS---------------------------------------------------- 406 (625)
Q Consensus 379 L~L~~~~~l~~l~~~~~~~~~~~~~~~~---------------------------------------------------- 406 (625)
|++++|+..+.+|..+............
T Consensus 543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 9999998777888765443222111100
Q ss_pred CCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcchhhcccc
Q 037953 407 SSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLEEHFKK 486 (625)
Q Consensus 407 ~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~~~~~~ 486 (625)
..+..+..+++|+.|+++++.-...++. .++.+++|+.|++++|...+.+|..++++++|++|++++|.....+| .
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~---~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip-~ 698 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPK---EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP-Q 698 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCCCG---GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC-G
T ss_pred cCchhhhccccccEEECcCCcccccCCH---HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC-h
Confidence 0122355678899999998753333332 25589999999999976667899999999999999999998877777 6
Q ss_pred cccccCCCCceEEecC
Q 037953 487 DRSKISHIPDIQIYER 502 (625)
Q Consensus 487 ~~~~l~~l~~l~~~~~ 502 (625)
.+..+..+..+.+..+
T Consensus 699 ~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNN 714 (768)
T ss_dssp GGGGCCCCSEEECCSS
T ss_pred HHhCCCCCCEEECcCC
Confidence 7777888888877654
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=8.3e-29 Score=275.59 Aligned_cols=379 Identities=16% Similarity=0.142 Sum_probs=222.7
Q ss_pred CCCceEEEEEEcCCCCcchh-hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-
Q 037953 70 CPEKLRHLMLVLGYEAPSLV-SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI- 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l- 147 (625)
.++++++|++++|.+..+++ .+.++++|++|++++|. +....| ..|+++++|++|+|+ +|.+..+
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~i~~---~~~~~l~~L~~L~Ls--------~n~l~~~~ 96 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE--IETIED---KAWHGLHHLSNLILT--------GNPIQSFS 96 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--CCEECT---TTTTTCTTCCEEECT--------TCCCCCCC
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc--ccccCH---HHhhchhhcCEeECC--------CCcccccC
Confidence 56889999999999977765 88899999999999975 556667 789999999999999 8887777
Q ss_pred hcccccccccceecC--CCCCCCc-hhhcCCCCCceEeecCCCCCC--ccccccccccccceEEecCccccccc-ccCCC
Q 037953 148 LNGVEKLIHLRYLKL--NLVGDLP-EKCCELLNLQTLELENSSHFK--RFPQGIGKLINLRHLIFTEDLLEYMP-KGIEK 221 (625)
Q Consensus 148 p~~~~~L~~L~~L~L--~~l~~lP-~~i~~L~~L~~L~L~~~~~l~--~lp~~l~~L~~L~~L~l~~~~l~~lp-~~i~~ 221 (625)
|.+|+++++|++|++ |.+..+| ..++++++|++|++++|. +. .+|..++++++|++|+++.|.++.++ ..++.
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSC-CCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH
T ss_pred hhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCc-ccceechHhHhhcCCCCEEEccCCcceecChhhhhh
Confidence 788999999999999 4477776 679999999999999998 66 57889999999999999888887764 44666
Q ss_pred ccccc----cCCceEecCCCCcCCCcccChhccccccccccceEEeccCC------------------------------
Q 037953 222 LTSLR----TLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGN------------------------------ 267 (625)
Q Consensus 222 L~~L~----~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~------------------------------ 267 (625)
+++|+ +|++..+.... .+... +.. .+|+ .+.+.+...
T Consensus 176 l~~L~~~l~~L~l~~n~l~~-----~~~~~--~~~-~~L~-~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 176 LRENPQVNLSLDMSLNPIDF-----IQDQA--FQG-IKLH-ELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp HHHCTTCCCEEECTTCCCCE-----ECTTT--TTT-CEEE-EEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred hhccccccceeeccCCCcce-----eCccc--ccC-ceee-eeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 66665 33333222211 11111 111 1233 344433211
Q ss_pred ------------------------CCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCC
Q 037953 268 ------------------------VADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWP 323 (625)
Q Consensus 268 ------------------------~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 323 (625)
.+...+..+. +..+++|+.|+++++.+ ..++ .+..
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~-------------------~~l~-~l~~ 305 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSI-------------------KYLE-DVPK 305 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCC-------------------CCCC-CCCT
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccc-------------------hhhh-hccc
Confidence 0111111111 44455555555555431 1122 4555
Q ss_pred CCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceee---CccCCCCCCC
Q 037953 324 PPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERV---GDESLGIANG 400 (625)
Q Consensus 324 ~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l---~~~~~~~~~~ 400 (625)
+++|+.|++++|....+ |.+ .+++|+.|++++|.....+ .++.+++|++|++++|. ++.+ +..+.....+
T Consensus 306 ~~~L~~L~l~~n~l~~l---p~~--~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L 378 (606)
T 3vq2_A 306 HFKWQSLSIIRCQLKQF---PTL--DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSL 378 (606)
T ss_dssp TCCCSEEEEESCCCSSC---CCC--CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSC-EEEEEECCHHHHCCSCC
T ss_pred cccCCEEEcccccCccc---ccC--CCCccceeeccCCcCccch-hhccCCCCCEEECcCCc-cCCCcchhhhhccCCcc
Confidence 66677777776666555 533 6666666666666444333 34455666666666544 3322 2222233333
Q ss_pred CCCCCCCC-----CCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEe
Q 037953 401 DHGAPSSS-----SVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRIN 475 (625)
Q Consensus 401 ~~~~~~~~-----~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 475 (625)
..+.++.. +..+..+++|+.|+++++.-....+. ..+..+++|+.|++++|......|..+..+++|++|+++
T Consensus 379 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 456 (606)
T 3vq2_A 379 RHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF--SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456 (606)
T ss_dssp CEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTT--TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred cEeECCCCccccchhhccCCCCCCeeECCCCccCCccCh--hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECC
Confidence 33333221 12244555566666555421111110 112345566666666554333344555555566666665
Q ss_pred cCcchhhcccccccccCCCCceEEec
Q 037953 476 RCRVLEEHFKKDRSKISHIPDIQIYE 501 (625)
Q Consensus 476 ~c~~L~~~~~~~~~~l~~l~~l~~~~ 501 (625)
+|..........+..+.++..+.+.+
T Consensus 457 ~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 457 GNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred CCcCCCcchHHhhccCCCCCEEECCC
Confidence 55433322213344444444444443
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=5.9e-29 Score=277.33 Aligned_cols=342 Identities=14% Similarity=0.184 Sum_probs=265.9
Q ss_pred ccccCCCCceEEEEEEcCCCCc------------------chhhhc--cCCcceEEEeecccCCccccCchhhHHHhcCC
Q 037953 65 LLINTCPEKLRHLMLVLGYEAP------------------SLVSIF--NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLT 124 (625)
Q Consensus 65 ~~~~~~~~~lr~L~l~~~~~~~------------------~~~~~~--~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~ 124 (625)
|.......+++.|++++|.+.. +|+.+. ++++|++|++++|. +.+.+| ..|++++
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~--l~~~~p---~~l~~l~ 273 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP--NLTKLP---TFLKALP 273 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT--TCSSCC---TTTTTCS
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc--CCccCh---HHHhcCC
Confidence 3334457799999999999977 999988 99999999999975 567788 8899999
Q ss_pred ceeEEEeecCCCccccccc-hh--hhhcccccc------cccceecC--CCCCCCch--hhcCCCCCceEeecCCCCCC-
Q 037953 125 CLRALRIEGTDNWELEEDQ-TN--EILNGVEKL------IHLRYLKL--NLVGDLPE--KCCELLNLQTLELENSSHFK- 190 (625)
Q Consensus 125 ~Lr~L~Ls~c~~~~~~~~~-l~--~lp~~~~~L------~~L~~L~L--~~l~~lP~--~i~~L~~L~~L~L~~~~~l~- 190 (625)
+|++|+++ +|. +. .+|..++++ ++|++|++ |.+..+|. .++++++|++|++++|. +.
T Consensus 274 ~L~~L~Ls--------~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g 344 (636)
T 4eco_A 274 EMQLINVA--------CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEG 344 (636)
T ss_dssp SCCEEECT--------TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCC-CEE
T ss_pred CCCEEECc--------CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCc-Ccc
Confidence 99999999 886 65 589888887 99999999 44889998 89999999999999999 77
Q ss_pred ccccccccccccceEEecCcccccccccCCCccc-cccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCC
Q 037953 191 RFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTS-LRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVA 269 (625)
Q Consensus 191 ~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~-L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~ 269 (625)
.+| .++++++|++|++++|.+..+|..++++++ |++|++..+.... ++..+..+ .+.+|+ .|.+++.
T Consensus 345 ~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~-----lp~~~~~~-~l~~L~-~L~Ls~N---- 412 (636)
T 4eco_A 345 KLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-----IPNIFDAK-SVSVMS-AIDFSYN---- 412 (636)
T ss_dssp ECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSS-----CCSCCCTT-CSSCEE-EEECCSS----
T ss_pred chh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcc-----cchhhhhc-ccCccC-EEECcCC----
Confidence 999 999999999999999999999999999999 9999887665443 23322222 122455 6777663
Q ss_pred ChhHHHHhccC-------CCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhc-CCCCCCCcEEEEeccCCCccc
Q 037953 270 DVDEVKNAHLE-------KKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEA-LWPPPNLESLEIAGFRGRKMM 341 (625)
Q Consensus 270 ~~~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~~~~~~ 341 (625)
.+.+..+..+. .+.+|+.|++++|.++ .++.. +..+++|+.|++++|....+
T Consensus 413 ~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-------------------~lp~~~~~~l~~L~~L~Ls~N~l~~i- 472 (636)
T 4eco_A 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-------------------KFPKELFSTGSPLSSINLMGNMLTEI- 472 (636)
T ss_dssp CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-------------------SCCTHHHHTTCCCSEEECCSSCCSBC-
T ss_pred cCCCcchhhhcccccccccCCCCCEEECcCCccC-------------------cCCHHHHccCCCCCEEECCCCCCCCc-
Confidence 33333444455 6779999999988532 12222 33578999999999988876
Q ss_pred CCchhhcc--------cccccEEEEeCCCCCCCCCC-CC--CCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCC
Q 037953 342 LSTNWMAS--------LNMLKKLRLLNCPTCEIMPP-LG--QLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSV 410 (625)
Q Consensus 342 ~~p~~l~~--------l~~L~~L~L~~c~~l~~l~~-l~--~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 410 (625)
|..... +++|+.|++++|. +..+|. +. .+++|+.|+|++|. ++.+|..
T Consensus 473 --~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~-l~~ip~~----------------- 531 (636)
T 4eco_A 473 --PKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQ----------------- 531 (636)
T ss_dssp --CSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTCTTCCEEECCSSC-CSSCCCG-----------------
T ss_pred --CHHHhccccccccccCCccEEECcCCc-CCccChhhhhccCCCcCEEECCCCC-CCCcChh-----------------
Confidence 665432 2399999999965 457774 54 89999999999976 5556654
Q ss_pred CCCCCCCCCeeeccCccc------ccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcch
Q 037953 411 NNIAFPKLKELEFSGLQE------WEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVL 480 (625)
Q Consensus 411 ~~~~l~~L~~L~L~~~~~------l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L 480 (625)
+..+++|+.|+++++.. ...++ ..++.+++|++|++++| .++.+|..+. ++|++|++++|+..
T Consensus 532 -~~~l~~L~~L~Ls~N~~ls~N~l~~~~p---~~l~~l~~L~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 532 -PLNSSTLKGFGIRNQRDAQGNRTLREWP---EGITLCPSLTQLQIGSN-DIRKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp -GGGCSSCCEEECCSCBCTTCCBCCCCCC---TTGGGCSSCCEEECCSS-CCCBCCSCCC--TTCCEEECCSCTTC
T ss_pred -hhcCCCCCEEECCCCcccccCcccccCh---HHHhcCCCCCEEECCCC-cCCccCHhHh--CcCCEEECcCCCCc
Confidence 56789999999976431 22222 23558999999999996 5699998865 89999999999753
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=2.8e-29 Score=285.07 Aligned_cols=198 Identities=14% Similarity=0.100 Sum_probs=159.6
Q ss_pred CceEEEEEEcCCC-CcchhhhccCCcceEEEe-ecccC------------------------------------------
Q 037953 72 EKLRHLMLVLGYE-APSLVSIFNAIKLRSLIL-FYWIP------------------------------------------ 107 (625)
Q Consensus 72 ~~lr~L~l~~~~~-~~~~~~~~~l~~Lr~L~L-~~~~~------------------------------------------ 107 (625)
.+++.|+|.++.+ +.+|+++.++++|++|+| ++|..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 6899999999998 688999999999999999 55420
Q ss_pred ---------------------------------CccccCchhhHHHhcCCceeEEEeecCCCccccccchhh--------
Q 037953 108 ---------------------------------NLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE-------- 146 (625)
Q Consensus 108 ---------------------------------~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~-------- 146 (625)
.+.+ +| ..|+++++|++|+|+ +|.+..
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP---~~l~~L~~L~~L~Ls--------~N~Lsg~~i~~~~~ 470 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-IS---KAIQRLTKLQIIYFA--------NSPFTYDNIAVDWE 470 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-EC---GGGGGCTTCCEEEEE--------SCCCCGGGBSSSCS
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hh---HHHhcCCCCCEEECc--------CCcCCCCccccccc
Confidence 0111 67 789999999999999 787666
Q ss_pred ----------hhcccc--cccccceecC--CC-CCCCchhhcCCCCCceEeecCCCCCC--cccccccccc-------cc
Q 037953 147 ----------ILNGVE--KLIHLRYLKL--NL-VGDLPEKCCELLNLQTLELENSSHFK--RFPQGIGKLI-------NL 202 (625)
Q Consensus 147 ----------lp~~~~--~L~~L~~L~L--~~-l~~lP~~i~~L~~L~~L~L~~~~~l~--~lp~~l~~L~-------~L 202 (625)
+|..++ ++++|++|+| |. .+.+|..++++++|++|+|++|..+. .+|..+++++ +|
T Consensus 471 ~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L 550 (876)
T 4ecn_A 471 DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550 (876)
T ss_dssp CTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTC
T ss_pred ccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCc
Confidence 999988 9999999999 66 88999999999999999999997354 5898888877 99
Q ss_pred ceEEecCcccccccc--cCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccC
Q 037953 203 RHLIFTEDLLEYMPK--GIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLE 280 (625)
Q Consensus 203 ~~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~ 280 (625)
++|++++|.+..+|. .++++++|+.|++..+.... ++ .+.++++|+ .|.+++..- . .++..+.
T Consensus 551 ~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~-----lp----~~~~L~~L~-~L~Ls~N~l----~-~lp~~l~ 615 (876)
T 4ecn_A 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH-----LE----AFGTNVKLT-DLKLDYNQI----E-EIPEDFC 615 (876)
T ss_dssp CEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB-----CC----CCCTTSEES-EEECCSSCC----S-CCCTTSC
T ss_pred cEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc-----ch----hhcCCCcce-EEECcCCcc----c-cchHHHh
Confidence 999999999999998 89999999999876655432 22 556666666 777766432 2 3445577
Q ss_pred CCCC-CCeEEEEEeccc
Q 037953 281 KKKN-LVRLILRFKDID 296 (625)
Q Consensus 281 ~l~~-L~~L~l~~~~~~ 296 (625)
.+++ |+.|++++|.++
T Consensus 616 ~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 616 AFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp EECTTCCEEECCSSCCC
T ss_pred hccccCCEEECcCCCCC
Confidence 8888 999999988643
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.96 E-value=1.3e-28 Score=274.02 Aligned_cols=405 Identities=12% Similarity=0.063 Sum_probs=264.6
Q ss_pred CCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-
Q 037953 70 CPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI- 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l- 147 (625)
.++.+++|++++|.+..+ |..+.++++|++|++++|. +....| ..|+++++|++|+|+ +|.+..+
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~---~~~~~l~~L~~L~Ls--------~n~l~~~~ 97 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ--IYWIHE---DTFQSQHRLDTLVLT--------ANPLIFMA 97 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC--CCEECT---TTTTTCTTCCEEECT--------TCCCSEEC
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCc--cceeCh---hhccCccccCeeeCC--------CCcccccC
Confidence 567899999999999777 5688999999999999975 456667 889999999999999 8887665
Q ss_pred hcccccccccceecC--CCCCCC-chhhcCCCCCceEeecCCCCCCccc-cccccccccceEEecCccccccc-ccCCCc
Q 037953 148 LNGVEKLIHLRYLKL--NLVGDL-PEKCCELLNLQTLELENSSHFKRFP-QGIGKLINLRHLIFTEDLLEYMP-KGIEKL 222 (625)
Q Consensus 148 p~~~~~L~~L~~L~L--~~l~~l-P~~i~~L~~L~~L~L~~~~~l~~lp-~~l~~L~~L~~L~l~~~~l~~lp-~~i~~L 222 (625)
|..|+++++|++|++ |.+..+ |..++++++|++|++++|. +..++ +.+..+++|++|+++.|.++.++ ..++.+
T Consensus 98 ~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 176 (606)
T 3t6q_A 98 ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSL 176 (606)
T ss_dssp TTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTT
T ss_pred hhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhh
Confidence 678999999999999 447777 5779999999999999998 77653 34455999999999888887774 457777
Q ss_pred cccc--cCCceEecCCCCcCCCcccChh--------------------c--------------------------ccccc
Q 037953 223 TSLR--TLSEFVVASGGGRYGSEACKLE--------------------G--------------------------LRHLN 254 (625)
Q Consensus 223 ~~L~--~L~~~~~~~~~~~~~~~~~~l~--------------------~--------------------------l~~L~ 254 (625)
++|+ .|++..+...... +..+. . +..+.
T Consensus 177 ~~L~~l~L~l~~n~l~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 177 QQATNLSLNLNGNDIAGIE----PGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp TTCCSEEEECTTCCCCEEC----TTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred cccceeEEecCCCccCccC----hhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence 7777 4444333222100 00000 0 00000
Q ss_pred --ccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEE
Q 037953 255 --HLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEI 332 (625)
Q Consensus 255 --~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L 332 (625)
.|+ .+.+.+. .+.+..+..+..+++|+.|++++|.+ ..++..+..+++|++|++
T Consensus 253 ~~~L~-~L~l~~n----~l~~~~~~~~~~l~~L~~L~l~~n~l-------------------~~lp~~l~~l~~L~~L~l 308 (606)
T 3t6q_A 253 EMSVE-SINLQKH----YFFNISSNTFHCFSGLQELDLTATHL-------------------SELPSGLVGLSTLKKLVL 308 (606)
T ss_dssp GSEEE-EEECTTC----CCSSCCTTTTTTCTTCSEEECTTSCC-------------------SCCCSSCCSCTTCCEEEC
T ss_pred cCcee-EEEeecC----ccCccCHHHhccccCCCEEeccCCcc-------------------CCCChhhcccccCCEEEC
Confidence 122 2333221 11122233467778888888887742 345666777888999999
Q ss_pred eccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC--CCCCCCcceeeccccccceee---CccCCCCCCCCCCCCCC
Q 037953 333 AGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP--LGQLPSLEILLIKDMTSVERV---GDESLGIANGDHGAPSS 407 (625)
Q Consensus 333 ~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~~l~~l---~~~~~~~~~~~~~~~~~ 407 (625)
++|...... |..+..+++|++|++++|.....++. ++.+++|++|++++|. +..+ +..+.....+..+.++.
T Consensus 309 ~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~ 385 (606)
T 3t6q_A 309 SANKFENLC--QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD-IETSDCCNLQLRNLSHLQSLNLSY 385 (606)
T ss_dssp TTCCCSBGG--GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC-CCEEEESTTTTTTCTTCCEEECCS
T ss_pred ccCCcCcCc--hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc-cccccCcchhcccCCCCCEEECCC
Confidence 888776642 56777888888888888766656653 7788888888888876 4433 34444444554444443
Q ss_pred C------CCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcchh
Q 037953 408 S------SVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLE 481 (625)
Q Consensus 408 ~------~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~ 481 (625)
. +..+..+++|+.|+++++.- ..... ...+..+++|+.|++++|......|..+..+++|++|++++|+.-.
T Consensus 386 n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 463 (606)
T 3t6q_A 386 NEPLSLKTEAFKECPQLELLDLAFTRL-KVKDA-QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463 (606)
T ss_dssp CSCEEECTTTTTTCTTCSEEECTTCCE-ECCTT-CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGG
T ss_pred CcCCcCCHHHhcCCccCCeEECCCCcC-CCccc-chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCc
Confidence 2 12345677777887776532 21111 1113467888888888864434456667778888888888886533
Q ss_pred hcc-c-ccccccCCCCceEEecCCCCccchhhhhccCccccccc
Q 037953 482 EHF-K-KDRSKISHIPDIQIYERGPGFFTLMARLISDCLSMMNM 523 (625)
Q Consensus 482 ~~~-~-~~~~~l~~l~~l~~~~~~~~~~~l~~~~i~~c~~L~~l 523 (625)
... . ..+..+.++..+.+..+... ......+..+++|+.+
T Consensus 464 ~~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 464 GNIQKTNSLQTLGRLEILVLSFCDLS--SIDQHAFTSLKMMNHV 505 (606)
T ss_dssp GEECSSCGGGGCTTCCEEECTTSCCC--EECTTTTTTCTTCCEE
T ss_pred cccccchhhccCCCccEEECCCCccC--ccChhhhccccCCCEE
Confidence 211 1 23455566666666554332 2222234445555544
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.8e-28 Score=270.83 Aligned_cols=432 Identities=15% Similarity=0.121 Sum_probs=266.4
Q ss_pred CCCceEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.++++++|++++|.+..++ ..+.++++|++|++++|. +....| ..|+++++|++|+|+ +|.+..+|
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~i~~---~~~~~l~~L~~L~L~--------~n~l~~~~ 92 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIED---GAYQSLSHLSTLILT--------GNPIQSLA 92 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC--CCEECT---TTTTTCTTCCEEECT--------TCCCCEEC
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCc--CCccCc---ccccCchhCCEEeCc--------CCcCCccC
Confidence 5678999999999997765 478999999999999975 455666 789999999999999 88887775
Q ss_pred -cccccccccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCc--cccccccccccceEEecCccccccc-ccCCC
Q 037953 149 -NGVEKLIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKR--FPQGIGKLINLRHLIFTEDLLEYMP-KGIEK 221 (625)
Q Consensus 149 -~~~~~L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~--lp~~l~~L~~L~~L~l~~~~l~~lp-~~i~~ 221 (625)
..|+++++|++|++ .+ +..+|. .++++++|++|++++|. +.. +|..++++++|++|+++.|.++.++ ..++.
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 171 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHH
T ss_pred HhhhcCccccccccccccccccCCCccccccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccc
Confidence 67999999999999 44 888875 69999999999999998 664 7889999999999999888887765 45677
Q ss_pred cccc----ccCCceEecCCCCcCCCcccChhccccccccccceEEeccCC---------------------------CC-
Q 037953 222 LTSL----RTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGN---------------------------VA- 269 (625)
Q Consensus 222 L~~L----~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~---------------------------~~- 269 (625)
+++| +.|++..+.... .+ .+.+..+ .|+ .+.+.+... ..
T Consensus 172 l~~L~~~~~~L~l~~n~l~~-----~~--~~~~~~~-~L~-~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 242 (570)
T 2z63_A 172 LHQMPLLNLSLDLSLNPMNF-----IQ--PGAFKEI-RLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242 (570)
T ss_dssp HHTCTTCCCEEECTTCCCCE-----EC--TTTTTTC-EEE-EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred hhccchhhhhcccCCCCcee-----cC--HHHhccC-cce-eEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence 7777 344433222211 00 0111111 122 222222100 00
Q ss_pred --------------------------ChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCC
Q 037953 270 --------------------------DVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWP 323 (625)
Q Consensus 270 --------------------------~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 323 (625)
...+..+..+..+++|+.|+++++.+ ..++..+..
T Consensus 243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-------------------~~l~~~~~~ 303 (570)
T 2z63_A 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-------------------ERVKDFSYN 303 (570)
T ss_dssp CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE-------------------CSCCBCCSC
T ss_pred hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc-------------------hhhhhhhcc
Confidence 01111223455566777777776632 234445555
Q ss_pred CCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceee---CccCCCCCCC
Q 037953 324 PPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERV---GDESLGIANG 400 (625)
Q Consensus 324 ~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l---~~~~~~~~~~ 400 (625)
+ +|+.|++++|....+ |. ..+++|+.|++++|......+. ..+++|+.|++++|. +..+ +..+.....+
T Consensus 304 ~-~L~~L~l~~n~~~~l---~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L 375 (570)
T 2z63_A 304 F-GWQHLELVNCKFGQF---PT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSL 375 (570)
T ss_dssp C-CCSEEEEESCBCSSC---CB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCC
T ss_pred C-CccEEeeccCccccc---Cc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCccccccccccccCcc
Confidence 5 777777777766655 54 3567777777777654443333 567777777777765 3333 2333333444
Q ss_pred CCCCCCCCC-----CCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEe
Q 037953 401 DHGAPSSSS-----VNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRIN 475 (625)
Q Consensus 401 ~~~~~~~~~-----~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 475 (625)
..+.++... ..+..+++|+.|+++++. +..... ...+..+++|++|++++|......|..+..+++|++|+++
T Consensus 376 ~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 453 (570)
T 2z63_A 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSE-FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453 (570)
T ss_dssp CEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESCTT-SCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECT
T ss_pred CEEECCCCccccccccccccCCCCEEEccCCc-cccccc-hhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECc
Confidence 444443321 114566777777777653 222211 0113467888888888875445566677778888888888
Q ss_pred cCcch-hhcccccccccCCCCceEEecCCCCccchhhhhccCccccccccchhhhcCCCCC---ccccceeeeccccccc
Q 037953 476 RCRVL-EEHFKKDRSKISHIPDIQIYERGPGFFTLMARLISDCLSMMNMNPILSYSNRLPL---ASSHHLMARGEGIKNL 551 (625)
Q Consensus 476 ~c~~L-~~~~~~~~~~l~~l~~l~~~~~~~~~~~l~~~~i~~c~~L~~l~~~~~~~~~l~~---~~~~~l~~~~~~~~~~ 551 (625)
+|... ..+| ..+..+.++..+.+..+... ......+..|++|+.+...-.....++. ..+..+....-+.+.+
T Consensus 454 ~n~l~~~~~p-~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 454 GNSFQENFLP-DIFTELRNLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp TCEEGGGEEC-SCCTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCcCccccch-hhhhcccCCCEEECCCCccc--cCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 88754 2344 55566667777766655332 2223334556666555432222222222 2223444444455555
Q ss_pred cCCCC
Q 037953 552 SGHLP 556 (625)
Q Consensus 552 ~~~~~ 556 (625)
++.+|
T Consensus 531 ~~~~~ 535 (570)
T 2z63_A 531 DCSCP 535 (570)
T ss_dssp CCCTT
T ss_pred cCCCc
Confidence 55543
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=1.2e-28 Score=280.08 Aligned_cols=346 Identities=13% Similarity=0.122 Sum_probs=226.7
Q ss_pred cccCCCCceEEEEEEcCCCCc------------------chhhhc--cCCcceEEEeecccCCccccCchhhHHHhcCCc
Q 037953 66 LINTCPEKLRHLMLVLGYEAP------------------SLVSIF--NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTC 125 (625)
Q Consensus 66 ~~~~~~~~lr~L~l~~~~~~~------------------~~~~~~--~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~ 125 (625)
......++++.|++++|.+.. +|+.+. ++++|++|++++|. +.+.+| ..|+++++
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~--l~~~iP---~~l~~L~~ 516 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP--NMTQLP---DFLYDLPE 516 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT--TCCSCC---GGGGGCSS
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC--CCccCh---HHHhCCCC
Confidence 333446788888888888865 787766 88888888888864 466777 78888888
Q ss_pred eeEEEeecCCCccccccc-hh--hhhccccccc-------ccceecC-C-CCCCCch--hhcCCCCCceEeecCCCCCCc
Q 037953 126 LRALRIEGTDNWELEEDQ-TN--EILNGVEKLI-------HLRYLKL-N-LVGDLPE--KCCELLNLQTLELENSSHFKR 191 (625)
Q Consensus 126 Lr~L~Ls~c~~~~~~~~~-l~--~lp~~~~~L~-------~L~~L~L-~-~l~~lP~--~i~~L~~L~~L~L~~~~~l~~ 191 (625)
|++|+|+ +|. +. .+|..++++. +|++|+| + .+..+|. .++++++|++|+|++|. +..
T Consensus 517 L~~L~Ls--------~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~ 587 (876)
T 4ecn_A 517 LQSLNIA--------CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRH 587 (876)
T ss_dssp CCEEECT--------TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCB
T ss_pred CCEEECc--------CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-ccc
Confidence 8888888 776 55 4777777666 8888888 4 4778888 78888888888888888 778
Q ss_pred cccccccccccceEEecCcccccccccCCCccc-cccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCC
Q 037953 192 FPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTS-LRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVAD 270 (625)
Q Consensus 192 lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~-L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~ 270 (625)
+| .++++++|++|++++|.+..+|..+.++++ |+.|++..+.... ++..+..+. .++|+ .|.++++.-...
T Consensus 588 lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~-----lp~~~~~~~-~~~L~-~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 588 LE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-----IPNIFNAKS-VYVMG-SVDFSYNKIGSE 659 (876)
T ss_dssp CC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCS-----CCSCCCTTC-SSCEE-EEECCSSCTTTT
T ss_pred ch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCc-----Cchhhhccc-cCCCC-EEECcCCcCCCc
Confidence 88 788888888888888888888888888887 8888776655433 222222221 11244 555554321110
Q ss_pred hhHHHHhccC--CCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcC-CCCCCCcEEEEeccCCCcccCCchhh
Q 037953 271 VDEVKNAHLE--KKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEAL-WPPPNLESLEIAGFRGRKMMLSTNWM 347 (625)
Q Consensus 271 ~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~~~~p~~l 347 (625)
. ..++..+. .+.+|+.|++++|.++ .++..+ ..+++|+.|++++|....+ |.++
T Consensus 660 i-p~l~~~l~~~~~~~L~~L~Ls~N~L~-------------------~lp~~~~~~l~~L~~L~Ls~N~L~~i---p~~~ 716 (876)
T 4ecn_A 660 G-RNISCSMDDYKGINASTVTLSYNEIQ-------------------KFPTELFATGSPISTIILSNNLMTSI---PENS 716 (876)
T ss_dssp S-SSCSSCTTTCCCCCEEEEECCSSCCC-------------------SCCHHHHHTTCCCSEEECCSCCCSCC---CTTS
T ss_pred c-ccchhhhccccCCCcCEEEccCCcCC-------------------ccCHHHHccCCCCCEEECCCCcCCcc---ChHH
Confidence 0 00011122 2347777777776421 122222 2567788888887776655 6554
Q ss_pred cc--------cccccEEEEeCCCCCCCCCC-CC--CCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCC
Q 037953 348 AS--------LNMLKKLRLLNCPTCEIMPP-LG--QLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFP 416 (625)
Q Consensus 348 ~~--------l~~L~~L~L~~c~~l~~l~~-l~--~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 416 (625)
.. +++|+.|+|++|. +..+|. +. .+++|+.|+|++|. +..+|.. +..++
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~~------------------l~~L~ 776 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYNC-FSSFPTQ------------------PLNSS 776 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTCTTCCEEECCSSC-CSSCCCG------------------GGGCT
T ss_pred hccccccccccCCccEEECCCCC-CccchHHhhhccCCCcCEEEeCCCC-CCccchh------------------hhcCC
Confidence 32 3378888887753 446663 44 77888888887765 4445543 45677
Q ss_pred CCCeeeccCcccccc---cccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcc
Q 037953 417 KLKELEFSGLQEWED---WDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRV 479 (625)
Q Consensus 417 ~L~~L~L~~~~~l~~---~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 479 (625)
+|+.|++++++.+.. ....+..+..+++|+.|++++| .++.+|..+. ++|+.|++++|+.
T Consensus 777 ~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 777 QLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp TCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC--SSSCEEECCSCTT
T ss_pred CCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHhhc--CCCCEEECCCCCC
Confidence 888888876431110 0111222446788888888885 4577887754 6888888888864
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=1.8e-28 Score=272.88 Aligned_cols=381 Identities=16% Similarity=0.089 Sum_probs=220.0
Q ss_pred CCCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh
Q 037953 69 TCPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI 147 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l 147 (625)
...+++++|++++|.+..+ |..+.++++|++|++++|. +....| ..|+++++|++|+|+ +|.+..+
T Consensus 53 ~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~--l~~~~p---~~~~~l~~L~~L~L~--------~n~l~~~ 119 (606)
T 3vq2_A 53 SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP--IQSFSP---GSFSGLTSLENLVAV--------ETKLASL 119 (606)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CCCCCT---TSSTTCTTCCEEECT--------TSCCCCS
T ss_pred cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc--ccccCh---hhcCCcccCCEEEcc--------CCccccc
Confidence 3467899999999999777 5578999999999999975 556667 889999999999999 8888777
Q ss_pred h-cccccccccceecC--CCCC--CCchhhcCCCCCceEeecCCCCCCccc-cccccccccc----eEEecCcccccccc
Q 037953 148 L-NGVEKLIHLRYLKL--NLVG--DLPEKCCELLNLQTLELENSSHFKRFP-QGIGKLINLR----HLIFTEDLLEYMPK 217 (625)
Q Consensus 148 p-~~~~~L~~L~~L~L--~~l~--~lP~~i~~L~~L~~L~L~~~~~l~~lp-~~l~~L~~L~----~L~l~~~~l~~lp~ 217 (625)
| ..++++++|++|++ |.+. .+|..++++++|++|++++|. +..++ ..++.+++|+ +|+++.|.++.+|.
T Consensus 120 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~ 198 (606)
T 3vq2_A 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198 (606)
T ss_dssp SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTTTHHHHHCTTCCCEEECTTCCCCEECT
T ss_pred cccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChhhhhhhhccccccceeeccCCCcceeCc
Confidence 6 67999999999999 4455 589999999999999999998 66654 4466555544 56665555554443
Q ss_pred cC------------------------------------------------------------------------------
Q 037953 218 GI------------------------------------------------------------------------------ 219 (625)
Q Consensus 218 ~i------------------------------------------------------------------------------ 219 (625)
..
T Consensus 199 ~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~ 278 (606)
T 3vq2_A 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI 278 (606)
T ss_dssp TTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGG
T ss_pred ccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccc
Confidence 32
Q ss_pred ---CCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEeccc
Q 037953 220 ---EKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDID 296 (625)
Q Consensus 220 ---~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 296 (625)
..+++|+.|++..+... .+..+..+++|+ .|.+.++.- ..+ + .+ .+++|+.|++++|...
T Consensus 279 ~~~~~l~~L~~L~l~~~~~~---------~l~~l~~~~~L~-~L~l~~n~l-~~l----p-~~-~l~~L~~L~l~~n~~~ 341 (606)
T 3vq2_A 279 VKFHCLANVSAMSLAGVSIK---------YLEDVPKHFKWQ-SLSIIRCQL-KQF----P-TL-DLPFLKSLTLTMNKGS 341 (606)
T ss_dssp GSCGGGTTCSEEEEESCCCC---------CCCCCCTTCCCS-EEEEESCCC-SSC----C-CC-CCSSCCEEEEESCSSC
T ss_pred cccccCCCCCEEEecCccch---------hhhhccccccCC-EEEcccccC-ccc----c-cC-CCCccceeeccCCcCc
Confidence 22233333333222221 222555566666 777776543 221 2 23 6677777777766311
Q ss_pred ccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCC
Q 037953 297 KAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPS 375 (625)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~ 375 (625)
+. ..+..+++|+.|++++|........|..+..+++|++|++++|. +..+| .++.+++
T Consensus 342 ~~--------------------~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~ 400 (606)
T 3vq2_A 342 IS--------------------FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEE 400 (606)
T ss_dssp EE--------------------CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTT
T ss_pred cc--------------------hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCC
Confidence 00 02333444455544444332210013333444444444444432 22222 2344444
Q ss_pred cceeeccccccceeeC-ccCCCCCCCCCCCCCCC------CCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEE
Q 037953 376 LEILLIKDMTSVERVG-DESLGIANGDHGAPSSS------SVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSL 448 (625)
Q Consensus 376 L~~L~L~~~~~l~~l~-~~~~~~~~~~~~~~~~~------~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L 448 (625)
|+.|++++|...+..+ ..+.....+..+.++.+ +..+..+++|+.|+++++.-..... +..++.+++|+.|
T Consensus 401 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~~L 478 (606)
T 3vq2_A 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTL--SNVFANTTNLTFL 478 (606)
T ss_dssp CCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE--CSCCTTCTTCCEE
T ss_pred CCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcch--HHhhccCCCCCEE
Confidence 4444444433111111 12222222222222211 1124566777777777764222111 1113367777777
Q ss_pred EEecCCCCCcCCcCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCCC
Q 037953 449 SIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERGP 504 (625)
Q Consensus 449 ~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~~ 504 (625)
++++|...+..|..+..+++|++|++++|+.....+ ..+..+.++..+.+.++..
T Consensus 479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~l~~N~l 533 (606)
T 3vq2_A 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS-SHYNQLYSLSTLDCSFNRI 533 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG-GGTTTCTTCCEEECTTSCC
T ss_pred ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH-HHccCCCcCCEEECCCCcC
Confidence 777764333345556667777777777774433223 4555666666666655543
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=3.7e-28 Score=270.34 Aligned_cols=142 Identities=15% Similarity=0.080 Sum_probs=113.6
Q ss_pred cCCCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhh
Q 037953 68 NTCPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE 146 (625)
Q Consensus 68 ~~~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~ 146 (625)
.....++++|++++|.+..+ |..|.++++|++|++++|. +....| ..|+++++|++|+++ +|.+..
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~---~~~~~l~~L~~L~L~--------~n~i~~ 119 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP--LIFMAE---TALSGPKALKHLFFI--------QTGISS 119 (606)
T ss_dssp STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CSEECT---TTTSSCTTCCEEECT--------TSCCSC
T ss_pred hccCccceEEECCCCccceeChhhccCccccCeeeCCCCc--ccccCh---hhhcccccccEeecc--------ccCccc
Confidence 34567899999999998665 6789999999999999975 456667 889999999999999 888887
Q ss_pred h-hcccccccccceecC--CCCCCCc-hhhcCCCCCceEeecCCCCCCcc-ccccccccccc--eEEecCcccccccccC
Q 037953 147 I-LNGVEKLIHLRYLKL--NLVGDLP-EKCCELLNLQTLELENSSHFKRF-PQGIGKLINLR--HLIFTEDLLEYMPKGI 219 (625)
Q Consensus 147 l-p~~~~~L~~L~~L~L--~~l~~lP-~~i~~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~--~L~l~~~~l~~lp~~i 219 (625)
+ |..++++++|++|++ |.+..++ ..+..+++|++|++++|. +..+ |..++.+++|+ .|+++.|.+..++...
T Consensus 120 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~ 198 (606)
T 3t6q_A 120 IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA 198 (606)
T ss_dssp GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT
T ss_pred CCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhhhhcccceeEEecCCCccCccChhH
Confidence 7 567999999999999 4477652 344559999999999998 7766 55588899998 7788777777766554
Q ss_pred CCcc
Q 037953 220 EKLT 223 (625)
Q Consensus 220 ~~L~ 223 (625)
....
T Consensus 199 ~~~~ 202 (606)
T 3t6q_A 199 FDSA 202 (606)
T ss_dssp TTTC
T ss_pred hhhc
Confidence 3333
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.95 E-value=7.4e-28 Score=271.60 Aligned_cols=153 Identities=18% Similarity=0.200 Sum_probs=127.6
Q ss_pred CCCceEEEEEEcCCCCcchh-hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLV-SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.+.++++|++++|.+..+++ .+.++++|++|++++|. +....| .+|+++++|++|+|+ +|.+..+|
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~---~~~~~l~~L~~L~L~--------~n~l~~l~ 89 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT--ISKLEP---ELCQKLPMLKVLNLQ--------HNELSQLS 89 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC--CCCCCT---THHHHCTTCCEEECC--------SSCCCCCC
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc--cCccCH---HHHhcccCcCEEECC--------CCccCccC
Confidence 46799999999999977765 68999999999999965 566778 899999999999999 88888888
Q ss_pred c-ccccccccceecC--CCCCCCc-hhhcCCCCCceEeecCCCCCCcc-ccccccccccceEEecCccccccccc---CC
Q 037953 149 N-GVEKLIHLRYLKL--NLVGDLP-EKCCELLNLQTLELENSSHFKRF-PQGIGKLINLRHLIFTEDLLEYMPKG---IE 220 (625)
Q Consensus 149 ~-~~~~L~~L~~L~L--~~l~~lP-~~i~~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~~L~l~~~~l~~lp~~---i~ 220 (625)
. +|+++++|++|++ |.+..+| ..++++++|++|++++|. +... |..++++++|++|+++.|.++.++.. ..
T Consensus 90 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 168 (680)
T 1ziw_A 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG-LSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIF 168 (680)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSC-CSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGG
T ss_pred hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCc-ccccCchhhcccccCCEEEccCCcccccCHHHhhcc
Confidence 6 5999999999999 4477776 579999999999999998 6554 55689999999999988888877643 23
Q ss_pred CccccccCCceEecCC
Q 037953 221 KLTSLRTLSEFVVASG 236 (625)
Q Consensus 221 ~L~~L~~L~~~~~~~~ 236 (625)
.+++|+.|++..+...
T Consensus 169 ~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 169 ANSSLKKLELSSNQIK 184 (680)
T ss_dssp TTCEESEEECTTCCCC
T ss_pred ccccccEEECCCCccc
Confidence 4578888887655433
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=5.4e-27 Score=255.95 Aligned_cols=378 Identities=12% Similarity=0.078 Sum_probs=191.3
Q ss_pred CCceEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 71 PEKLRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
++++++|++++|.+..++ ..+.++++|++|++++|. +.+..| ..|+++++|++|+|+ +|.+..+|.
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~---~~~~~l~~L~~L~Ls--------~N~l~~lp~ 86 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNR--IQYLDI---SVFKFNQELEYLDLS--------HNKLVKISC 86 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC--CCEEEG---GGGTTCTTCCEEECC--------SSCCCEEEC
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCc--cCCcCh---HHhhcccCCCEEecC--------CCceeecCc
Confidence 366777777777765554 466777777777777754 344445 667777777777777 666666665
Q ss_pred ccccccccceecC--CCCCC--CchhhcCCCCCceEeecCCCCCCcccccccccccc--ceEEecCccc---ccccccCC
Q 037953 150 GVEKLIHLRYLKL--NLVGD--LPEKCCELLNLQTLELENSSHFKRFPQGIGKLINL--RHLIFTEDLL---EYMPKGIE 220 (625)
Q Consensus 150 ~~~~L~~L~~L~L--~~l~~--lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L--~~L~l~~~~l---~~lp~~i~ 220 (625)
. .+++|++|+| |.+.. +|..++++++|++|++++|. +.. ..+..+++| ++|+++.|.+ ...|..++
T Consensus 87 ~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~ 161 (520)
T 2z7x_B 87 H--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTH-LEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQ 161 (520)
T ss_dssp C--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESS-CCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTT
T ss_pred c--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcc-cch--hhccccccceeeEEEeeccccccccccccccc
Confidence 5 6777777777 33543 45677777777777777776 544 345666666 7777755444 33344444
Q ss_pred CccccccCCc--eEecCCCCcCCCcccChhccccccccccceEEeccCC---CCChhHHHHhccCCCCCCCeEEEEEecc
Q 037953 221 KLTSLRTLSE--FVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGN---VADVDEVKNAHLEKKKNLVRLILRFKDI 295 (625)
Q Consensus 221 ~L~~L~~L~~--~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~---~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 295 (625)
.+.. +.+.+ ..+.... ...-..+.+++.|+ .+.+..+.. .....+..+ .+..+++|+.|+++.+.+
T Consensus 162 ~l~~-~~l~l~l~~n~~~~------~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 162 DFNT-ESLHIVFPTNKEFH------FILDVSVKTVANLE-LSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp TCCE-EEEEEECCSSSCCC------CCCCCCCTTCSEEE-ECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred cccc-ceEEEEeccCcchh------hhhhhhhhccccee-eccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 3321 11111 0000000 00001112233333 344433210 001222222 344455555555554432
Q ss_pred cccccCC-cc-----cc--cccc-hhhHHHHhhcC-----CCCCCCcEEEEeccCCCcccCCc-hhhccc---ccccEEE
Q 037953 296 DKAVKRW-PE-----AI--SNEN-AAKHEAICEAL-----WPPPNLESLEIAGFRGRKMMLST-NWMASL---NMLKKLR 357 (625)
Q Consensus 296 ~~~~~~~-~~-----~~--~~~~-~~~~~~~~~~l-----~~~~~L~~L~L~~~~~~~~~~~p-~~l~~l---~~L~~L~ 357 (625)
++..... .. .. .... ....+.++..+ ..+++|+.++++++.. .+ | .++..+ ++|+.|+
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~---p~~~~~~~~~~~~L~~L~ 308 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GF---PQSYIYEIFSNMNIKNFT 308 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CS---CTHHHHHHHHTCCCSEEE
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ec---chhhhhcccccCceeEEE
Confidence 1000000 00 00 0000 00001233333 4555666666665555 33 4 344433 4566667
Q ss_pred EeCCCCCCCCCCCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCC
Q 037953 358 LLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKE 437 (625)
Q Consensus 358 L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~ 437 (625)
+++|. +...+..+.+++|++|++++|...+.+|.. +..+++|++|+++++. +..++..+.
T Consensus 309 l~~n~-l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~------------------~~~l~~L~~L~L~~N~-l~~l~~~~~ 368 (520)
T 2z7x_B 309 VSGTR-MVHMLCPSKISPFLHLDFSNNLLTDTVFEN------------------CGHLTELETLILQMNQ-LKELSKIAE 368 (520)
T ss_dssp EESSC-CCCCCCCSSCCCCCEEECCSSCCCTTTTTT------------------CCCCSSCCEEECCSSC-CCBHHHHHH
T ss_pred cCCCc-cccccchhhCCcccEEEeECCccChhhhhh------------------hccCCCCCEEEccCCc-cCccccchH
Confidence 66643 333333367778888888876622223322 4567778888887653 222211011
Q ss_pred CcccCCCccEEEEecCCCCCc-CCcC-CCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCC
Q 037953 438 DITIMPQINSLSIYGCHKLKS-LPDQ-LLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERG 503 (625)
Q Consensus 438 ~~~~l~~L~~L~l~~c~~l~~-lp~~-~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~ 503 (625)
.++.+++|++|++++| .++. +|.. +..+++|++|++++|......+ ..++ .++..+.+..+.
T Consensus 369 ~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~--~~L~~L~Ls~N~ 432 (520)
T 2z7x_B 369 MTTQMKSLQQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF-RCLP--PRIKVLDLHSNK 432 (520)
T ss_dssp HHTTCTTCCEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG-GSCC--TTCCEEECCSSC
T ss_pred HHhhCCCCCEEECCCC-cCCcccccchhccCccCCEEECcCCCCCcchh-hhhc--ccCCEEECCCCc
Confidence 1235778888888875 4444 7654 4557778888888776544443 2222 455566555543
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.95 E-value=7.6e-26 Score=260.64 Aligned_cols=285 Identities=18% Similarity=0.156 Sum_probs=197.3
Q ss_pred CCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-
Q 037953 70 CPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI- 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l- 147 (625)
.++++++|++++|.+..+ +..+.++++|++|++++|. ......| ..|.++++|++|+|+ +|.+..+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~-~~~~i~~---~~f~~L~~L~~L~Ls--------~N~l~~~~ 89 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY-TPLTIDK---EAFRNLPNLRILDLG--------SSKIYFLH 89 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC-CCCEECT---TTTSSCTTCCEEECT--------TCCCCEEC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC-CccccCH---HHhcCCCCCCEEECC--------CCcCcccC
Confidence 678999999999999666 6789999999999999974 2333446 889999999999999 8887766
Q ss_pred hcccccccccceecC--CCCC-CCchh--hcCCCCCceEeecCCCCCCccc--cccccccccceEEecCcccccc-cccC
Q 037953 148 LNGVEKLIHLRYLKL--NLVG-DLPEK--CCELLNLQTLELENSSHFKRFP--QGIGKLINLRHLIFTEDLLEYM-PKGI 219 (625)
Q Consensus 148 p~~~~~L~~L~~L~L--~~l~-~lP~~--i~~L~~L~~L~L~~~~~l~~lp--~~l~~L~~L~~L~l~~~~l~~l-p~~i 219 (625)
|..|+++++|++|+| |.+. .+|.. ++++++|++|+|++|. +..++ ..++++++|++|+++.|.+..+ |..+
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l 168 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGG
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHc
Confidence 888999999999999 5554 46665 9999999999999998 76653 4699999999999987777654 4556
Q ss_pred CCc--cccccCCceEecCCCCcCCCcccChhcccc---ccccccceEEeccCCCCCh-----------------------
Q 037953 220 EKL--TSLRTLSEFVVASGGGRYGSEACKLEGLRH---LNHLRGSLKVRGLGNVADV----------------------- 271 (625)
Q Consensus 220 ~~L--~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~---L~~L~~~L~l~~~~~~~~~----------------------- 271 (625)
+.+ ++|+.|++..+.... ..+..++.+.+ ...|+ .|.++++.-....
T Consensus 169 ~~l~~~~L~~L~L~~n~l~~----~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 169 EPLQGKTLSFFSLAANSLYS----RVSVDWGKCMNPFRNMVLE-ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp HHHHHCSSCCCEECCSBSCC----CCCCCCCSSSCTTTTCCBS-EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred ccccCCccceEECCCCcccc----ccccchhhcCCccccCcee-EEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 666 677777766554433 11111111111 00244 4444443110000
Q ss_pred ---------hHHHHhccCCC--CCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcc
Q 037953 272 ---------DEVKNAHLEKK--KNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKM 340 (625)
Q Consensus 272 ---------~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~ 340 (625)
.......+.++ ++|+.|++++|.+. ...+..+..+++|+.|++++|.....
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~------------------~~~~~~~~~l~~L~~L~L~~n~i~~~ 305 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF------------------SLNSRVFETLKDLKVLNLAYNKINKI 305 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC------------------EECSCCSSSCCCCCEEEEESCCCCEE
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCccc------------------ccChhhhhcCCCCCEEECCCCcCCCC
Confidence 01111122222 56777877766422 22344567788899999988887665
Q ss_pred cCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceeeCcc
Q 037953 341 MLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTSVERVGDE 393 (625)
Q Consensus 341 ~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~ 393 (625)
. |..+..+++|++|++++|......+ .++.+++|+.|++++|. ++.++..
T Consensus 306 ~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~ 356 (844)
T 3j0a_A 306 A--DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQ 356 (844)
T ss_dssp C--TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSS
T ss_pred C--hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChh
Confidence 2 5677888899999998865433334 47888889999998875 5655543
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=4.6e-27 Score=258.28 Aligned_cols=149 Identities=19% Similarity=0.242 Sum_probs=119.2
Q ss_pred CCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.++++++|++++|.+..+ |..+.++++|++|++++|. +....| +.|+++++|++|+|+ +|.+..+|
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~---~~~~~l~~L~~L~Ls--------~n~l~~~~ 90 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR--INTIEG---DAFYSLGSLEHLDLS--------DNHLSSLS 90 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC--CCEECT---TTTTTCTTCCEEECT--------TSCCCSCC
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCC--cCccCh---hhccccccCCEEECC--------CCccCccC
Confidence 356899999999998666 4678899999999999975 556666 789999999999999 88877775
Q ss_pred cc-cccccccceecC--CCCCC--CchhhcCCCCCceEeecCCCCCCcccc-ccccccccceEEecCccccc-ccccCCC
Q 037953 149 NG-VEKLIHLRYLKL--NLVGD--LPEKCCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFTEDLLEY-MPKGIEK 221 (625)
Q Consensus 149 ~~-~~~L~~L~~L~L--~~l~~--lP~~i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~~~~l~~-lp~~i~~ 221 (625)
.. |+++++|++|++ |.+.. .|..++++++|++|++++|..++.+|. .++++++|++|+++.|.++. .|..+++
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 54 899999999999 44664 467889999999999999986777774 68899999999997666654 5667777
Q ss_pred ccccccCCce
Q 037953 222 LTSLRTLSEF 231 (625)
Q Consensus 222 L~~L~~L~~~ 231 (625)
+++|++|++.
T Consensus 171 l~~L~~L~l~ 180 (549)
T 2z81_A 171 IRDIHHLTLH 180 (549)
T ss_dssp CSEEEEEEEE
T ss_pred cccCceEecc
Confidence 7766666544
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.94 E-value=5.2e-27 Score=259.07 Aligned_cols=379 Identities=17% Similarity=0.136 Sum_probs=226.8
Q ss_pred CCCCceEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh
Q 037953 69 TCPEKLRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI 147 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l 147 (625)
...+++++|++++|.+..++ ..+.++++|++|++++|. +....| ..|+++++|++|+++ +|.+..+
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~--l~~~~~---~~~~~l~~L~~L~L~--------~n~l~~l 115 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--IQSLAL---GAFSGLSSLQKLVAV--------ETNLASL 115 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CCEECT---TTTTTCTTCCEEECT--------TSCCCCS
T ss_pred hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCc--CCccCH---hhhcCcccccccccc--------ccccccC
Confidence 34678999999999987775 568899999999999975 556666 789999999999999 8888888
Q ss_pred hc-ccccccccceecC--CCCCC--CchhhcCCCCCceEeecCCCCCCccc-ccccccccc----ceEEecCcccccccc
Q 037953 148 LN-GVEKLIHLRYLKL--NLVGD--LPEKCCELLNLQTLELENSSHFKRFP-QGIGKLINL----RHLIFTEDLLEYMPK 217 (625)
Q Consensus 148 p~-~~~~L~~L~~L~L--~~l~~--lP~~i~~L~~L~~L~L~~~~~l~~lp-~~l~~L~~L----~~L~l~~~~l~~lp~ 217 (625)
|. .++++++|++|++ |.+.. +|..++++++|++|++++|. +..++ ..++.+++| +.|+++.|.+..++.
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~ 194 (570)
T 2z63_A 116 ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194 (570)
T ss_dssp TTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT
T ss_pred CCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHccchhccchhhhhcccCCCCceecCH
Confidence 65 5999999999999 44654 79999999999999999998 76654 457777777 667775555443332
Q ss_pred --------------------------------------------------------------------------------
Q 037953 218 -------------------------------------------------------------------------------- 217 (625)
Q Consensus 218 -------------------------------------------------------------------------------- 217 (625)
T Consensus 195 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~ 274 (570)
T 2z63_A 195 GAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDI 274 (570)
T ss_dssp TTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCS
T ss_pred HHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhc
Confidence
Q ss_pred --cCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecc
Q 037953 218 --GIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDI 295 (625)
Q Consensus 218 --~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 295 (625)
.++.+++|+.|++..+.... .+.. +..+ +|+ .|.+.++.-. .. + ...+++|+.|++++|..
T Consensus 275 ~~~~~~l~~L~~L~l~~~~l~~-----l~~~---~~~~-~L~-~L~l~~n~~~-~l----~--~~~l~~L~~L~l~~n~~ 337 (570)
T 2z63_A 275 IDLFNCLTNVSSFSLVSVTIER-----VKDF---SYNF-GWQ-HLELVNCKFG-QF----P--TLKLKSLKRLTFTSNKG 337 (570)
T ss_dssp TTTTGGGTTCSEEEEESCEECS-----CCBC---CSCC-CCS-EEEEESCBCS-SC----C--BCBCSSCCEEEEESCBS
T ss_pred hhhhcCcCcccEEEecCccchh-----hhhh---hccC-Ccc-EEeeccCccc-cc----C--cccccccCEEeCcCCcc
Confidence 23334445555444333222 2222 2333 455 5666554321 11 1 13455666666665532
Q ss_pred cccccCC-ccccc--ccch---hhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-
Q 037953 296 DKAVKRW-PEAIS--NENA---AKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP- 368 (625)
Q Consensus 296 ~~~~~~~-~~~~~--~~~~---~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~- 368 (625)
.+..... ..... .... ......+..+..+++|+.|++++|..... |..+..+++|+.|++++|......+
T Consensus 338 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~---~~~~~~l~~L~~L~l~~n~l~~~~~~ 414 (570)
T 2z63_A 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLKQMSEF 414 (570)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE---EEEEETCTTCCEEECTTSEEESCTTS
T ss_pred ccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc---cccccccCCCCEEEccCCccccccch
Confidence 1100000 00000 0000 00000122233455566666655554444 4445555666666666544322222
Q ss_pred -CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccc-cccccCCCCcccCCCcc
Q 037953 369 -PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEW-EDWDFRKEDITIMPQIN 446 (625)
Q Consensus 369 -~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l-~~~~~~~~~~~~l~~L~ 446 (625)
.+..+++|++|++++|......+.. +..+++|++|+++++.-. ..++ ..+..+++|+
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~~~~~~~------------------~~~l~~L~~L~l~~n~l~~~~~p---~~~~~l~~L~ 473 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTRVAFNGI------------------FNGLSSLEVLKMAGNSFQENFLP---DIFTELRNLT 473 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTT------------------TTTCTTCCEEECTTCEEGGGEEC---SCCTTCTTCC
T ss_pred hhhhcCCCCCEEeCcCCcccccchhh------------------hhcCCcCcEEECcCCcCccccch---hhhhcccCCC
Confidence 3555666666666665422222211 456778888888876422 1222 2244678888
Q ss_pred EEEEecCCCCCc-CCcCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCCC
Q 037953 447 SLSIYGCHKLKS-LPDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERGP 504 (625)
Q Consensus 447 ~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~~ 504 (625)
.|++++|. ++. .|..+..+++|++|++++|. ++.++...+..+.++..+.+.++..
T Consensus 474 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 474 FLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp EEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EEECCCCc-cccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCcc
Confidence 88888864 444 46677778888888888874 4444434455666666666665543
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.7e-26 Score=252.03 Aligned_cols=364 Identities=15% Similarity=0.070 Sum_probs=236.2
Q ss_pred cCCCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhh
Q 037953 68 NTCPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE 146 (625)
Q Consensus 68 ~~~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~ 146 (625)
.....++++|++++|.+..+ |..+.++++|++|++++|. ...+| .. .+++|++|+|+ +|.+..
T Consensus 41 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~---l~~lp---~~--~l~~L~~L~L~--------~N~l~~ 104 (520)
T 2z7x_B 41 ILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK---LVKIS---CH--PTVNLKHLDLS--------FNAFDA 104 (520)
T ss_dssp HTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC---CCEEE---CC--CCCCCSEEECC--------SSCCSS
T ss_pred ccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc---eeecC---cc--ccCCccEEecc--------CCcccc
Confidence 34567999999999999766 6789999999999999986 33566 43 89999999999 888765
Q ss_pred --hhcccccccccceecC--CCCCCCchhhcCCCCC--ceEeecCCCC--CCcccccccc--------------------
Q 037953 147 --ILNGVEKLIHLRYLKL--NLVGDLPEKCCELLNL--QTLELENSSH--FKRFPQGIGK-------------------- 198 (625)
Q Consensus 147 --lp~~~~~L~~L~~L~L--~~l~~lP~~i~~L~~L--~~L~L~~~~~--l~~lp~~l~~-------------------- 198 (625)
+|..|+++++|++|++ |.+.. ..+..+++| ++|++++|.. ....|..+..
T Consensus 105 ~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~ 182 (520)
T 2z7x_B 105 LPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL 182 (520)
T ss_dssp CCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCC
T ss_pred ccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhh
Confidence 5789999999999999 44655 467788888 9999999983 2455555555
Q ss_pred ------ccccceEEecCcc-------cccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEecc
Q 037953 199 ------LINLRHLIFTEDL-------LEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGL 265 (625)
Q Consensus 199 ------L~~L~~L~l~~~~-------l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~ 265 (625)
+++|+.|++++|. +......++.+++|+.|++..+...... ...+......++|+ .|.+.++
T Consensus 183 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~----~~~~~~~~~~~~L~-~L~l~~n 257 (520)
T 2z7x_B 183 DVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS----FIRILQLVWHTTVW-YFSISNV 257 (520)
T ss_dssp CCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHH----HHHHHHHHHTSSCS-EEEEEEE
T ss_pred hhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHH----HHHHHHHhhhCccc-EEEeecc
Confidence 4455555553332 1111113344444444333322111000 00000000011233 3333332
Q ss_pred CCCCChhHHHHhcc-----CCCC--------------------------CCCeEEEEEecccccccCCcccccccchhhH
Q 037953 266 GNVADVDEVKNAHL-----EKKK--------------------------NLVRLILRFKDIDKAVKRWPEAISNENAAKH 314 (625)
Q Consensus 266 ~~~~~~~~~~~~~l-----~~l~--------------------------~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (625)
. +.+..+..+ ..++ +|+.|++++|.+.
T Consensus 258 ~----l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~------------------ 315 (520)
T 2z7x_B 258 K----LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMV------------------ 315 (520)
T ss_dssp E----EESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCC------------------
T ss_pred c----ccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccc------------------
Confidence 1 000111122 3334 4555555544311
Q ss_pred HHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCC--CCC-CCCCCCCcceeeccccccceeeC
Q 037953 315 EAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCE--IMP-PLGQLPSLEILLIKDMTSVERVG 391 (625)
Q Consensus 315 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~--~l~-~l~~l~~L~~L~L~~~~~l~~l~ 391 (625)
. ......+++|+.|++++|...... |.++..+++|+.|++++|...+ .+| .++.+++|++|++++|.....+|
T Consensus 316 -~-~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~ 391 (520)
T 2z7x_B 316 -H-MLCPSKISPFLHLDFSNNLLTDTV--FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391 (520)
T ss_dssp -C-CCCCSSCCCCCEEECCSSCCCTTT--TTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG
T ss_pred -c-ccchhhCCcccEEEeECCccChhh--hhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc
Confidence 0 001257889999999999877632 8888999999999999965433 333 37889999999999987333366
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccC-CCccEEEEecCCCCCcCCcCCCCCCCCC
Q 037953 392 DESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIM-PQINSLSIYGCHKLKSLPDQLLQSSTLK 470 (625)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 470 (625)
.+. ...+++|+.|+++++.-....+ . .+ ++|+.|++++| .++.+|..+..+++|+
T Consensus 392 ~~~-----------------~~~l~~L~~L~Ls~N~l~~~~~-~-----~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~ 447 (520)
T 2z7x_B 392 KGD-----------------CSWTKSLLSLNMSSNILTDTIF-R-----CLPPRIKVLDLHSN-KIKSIPKQVVKLEALQ 447 (520)
T ss_dssp GCS-----------------CCCCTTCCEEECCSSCCCGGGG-G-----SCCTTCCEEECCSS-CCCCCCGGGGGCTTCC
T ss_pred cch-----------------hccCccCCEEECcCCCCCcchh-h-----hhcccCCEEECCCC-cccccchhhhcCCCCC
Confidence 542 4567899999999875222221 1 23 69999999996 7889998888899999
Q ss_pred EEEEecCcchhhcccccccccCCCCceEEecCCCC
Q 037953 471 TLRINRCRVLEEHFKKDRSKISHIPDIQIYERGPG 505 (625)
Q Consensus 471 ~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~~~ 505 (625)
+|++++|. ++.+|...+..+.++..+.+.++...
T Consensus 448 ~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 448 ELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp EEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCCc-CCccCHHHhccCCcccEEECcCCCCc
Confidence 99999984 56777333666777888887776654
No 18
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=6e-26 Score=249.96 Aligned_cols=377 Identities=14% Similarity=0.112 Sum_probs=207.2
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hccccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVEK 153 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~ 153 (625)
++++++++.+..+|..+. ++|++|++++|. +....| ..|+++++|++|+|+ +|.+..+ |..|++
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~--i~~~~~---~~~~~l~~L~~L~Ls--------~N~l~~~~~~~~~~ 98 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNS--ISELRM---PDISFLSELRVLRLS--------HNRIRSLDFHVFLF 98 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSC--CCCCCG---GGTTTCTTCCEEECC--------SCCCCEECTTTTTT
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCC--ccccCh---hhhccCCCccEEECC--------CCCCCcCCHHHhCC
Confidence 566666666666665543 667777777654 344444 566677777777777 6665555 455666
Q ss_pred ccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccc--cccccccccceEEecCcccccccccCCCcccc--cc
Q 037953 154 LIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFP--QGIGKLINLRHLIFTEDLLEYMPKGIEKLTSL--RT 227 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp--~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L--~~ 227 (625)
+++|++|+| .+ +..+|.. .+++|++|++++|. +..+| ..++++++|++|+++.|.+.. ..+..+++| +.
T Consensus 99 l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~ 173 (562)
T 3a79_B 99 NQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHLHLSC 173 (562)
T ss_dssp CTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT--TTTGGGTTSCEEE
T ss_pred CCCCCEEECCCCcCCccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc--CchhhhhhceeeE
Confidence 777777777 33 6666655 66777777777766 55543 456677777777776665544 234444444 55
Q ss_pred CCceEecC--CCCcCCCcccChhc-----------------------cccccccccceEEeccC----------------
Q 037953 228 LSEFVVAS--GGGRYGSEACKLEG-----------------------LRHLNHLRGSLKVRGLG---------------- 266 (625)
Q Consensus 228 L~~~~~~~--~~~~~~~~~~~l~~-----------------------l~~L~~L~~~L~l~~~~---------------- 266 (625)
|++..+.. .. ..+..+.. +.++++|+ .+.+....
T Consensus 174 L~L~~n~l~~~~----~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~l~~~~~~l~~l 248 (562)
T 3a79_B 174 ILLDLVSYHIKG----GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ-LSNIKLNDENCQRLMTFLSELTRG 248 (562)
T ss_dssp EEEEESSCCCCS----SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE-EEEEECCSTTHHHHHHHHHHHHSC
T ss_pred EEeecccccccc----cCcccccccCcceEEEEecCccchhhhhhhcccccceEE-EecccccccccchHHHHHHHHhcc
Confidence 55444332 11 00111111 12333444 44444321
Q ss_pred ------------CCCChhHHHHhccCCCCCCCeEEEEEecccccccCCc-----ccccccc-----hh---hHHHHhhcC
Q 037953 267 ------------NVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWP-----EAISNEN-----AA---KHEAICEAL 321 (625)
Q Consensus 267 ------------~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-----~~~~~~~-----~~---~~~~~~~~l 321 (625)
-........+..+ ...+|++|++++|.+.+.++... ....... .. ........+
T Consensus 249 ~~L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~ 327 (562)
T 3a79_B 249 PTLLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327 (562)
T ss_dssp SSCEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHH
T ss_pred CcceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhh
Confidence 0000000011111 22378888888887554333221 0000000 00 000000000
Q ss_pred ----------------------CCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC----CCCCCCC
Q 037953 322 ----------------------WPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP----PLGQLPS 375 (625)
Q Consensus 322 ----------------------~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~----~l~~l~~ 375 (625)
..+++|+.|++++|...... |.++..+++|+.|++++| .++.++ .++.+++
T Consensus 328 ~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~ 404 (562)
T 3a79_B 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSV--FQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSS 404 (562)
T ss_dssp HHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTT--TTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTT
T ss_pred hccCcceEEEccCCCcccccCccCCCCceEEECCCCccccch--hhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCC
Confidence 34556666666666554421 555666666666666664 333332 2556666
Q ss_pred cceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccC-CCccEEEEecCC
Q 037953 376 LEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIM-PQINSLSIYGCH 454 (625)
Q Consensus 376 L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l-~~L~~L~l~~c~ 454 (625)
|+.|++++|.....+|.+. ...+++|++|+++++. +...... .+ ++|+.|++++|
T Consensus 405 L~~L~l~~N~l~~~~~~~~-----------------~~~l~~L~~L~l~~n~-l~~~~~~-----~l~~~L~~L~L~~N- 460 (562)
T 3a79_B 405 LETLDVSLNSLNSHAYDRT-----------------CAWAESILVLNLSSNM-LTGSVFR-----CLPPKVKVLDLHNN- 460 (562)
T ss_dssp CCEEECTTSCCBSCCSSCC-----------------CCCCTTCCEEECCSSC-CCGGGGS-----SCCTTCSEEECCSS-
T ss_pred CCEEECCCCcCCCccChhh-----------------hcCcccCCEEECCCCC-CCcchhh-----hhcCcCCEEECCCC-
Confidence 6666666655222244332 4567889999998874 2221111 34 68999999995
Q ss_pred CCCcCCcCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCCCC
Q 037953 455 KLKSLPDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERGPG 505 (625)
Q Consensus 455 ~l~~lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~~~ 505 (625)
.++.+|..+..+++|++|++++|. ++.+|...+..+.++..+.+.++...
T Consensus 461 ~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 461 RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 788999988889999999999985 55676333666777777777776544
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=3.3e-26 Score=245.98 Aligned_cols=319 Identities=19% Similarity=0.200 Sum_probs=242.3
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
..+++.|++.++.+..+|. +..+++|++|++++|. ...+| . +.++++|++|+++ +|.+..++.
T Consensus 45 l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~---l~~~~---~-~~~l~~L~~L~l~--------~n~l~~~~~- 107 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ---LTDIT---P-LKNLTKLVDILMN--------NNQIADITP- 107 (466)
T ss_dssp HHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSC---CCCCG---G-GTTCTTCCEEECC--------SSCCCCCGG-
T ss_pred hccccEEecCCCCCccCcc-hhhhcCCCEEECCCCc---cCCch---h-hhccccCCEEECC--------CCccccChh-
Confidence 4689999999998877774 7889999999999976 34445 4 8999999999999 888887776
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccC
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTL 228 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 228 (625)
++++++|++|++ ++ +..+|. +.++++|++|++++|. +..+| .++++++|++|++++ .+..++ .++++++|+.|
T Consensus 108 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~~-~~~~~~-~~~~l~~L~~L 182 (466)
T 1o6v_A 108 LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFGN-QVTDLK-PLANLTTLERL 182 (466)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEEE-SCCCCG-GGTTCTTCCEE
T ss_pred hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecCC-cccCch-hhccCCCCCEE
Confidence 999999999999 44 888875 9999999999999998 88876 489999999999963 444544 37788888888
Q ss_pred CceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccc
Q 037953 229 SEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISN 308 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 308 (625)
++..+.... +..+..+++|+ .|.+.++.- ... . .+..+++|+.|++++|.++
T Consensus 183 ~l~~n~l~~---------~~~l~~l~~L~-~L~l~~n~l-~~~---~--~~~~l~~L~~L~l~~n~l~------------ 234 (466)
T 1o6v_A 183 DISSNKVSD---------ISVLAKLTNLE-SLIATNNQI-SDI---T--PLGILTNLDELSLNGNQLK------------ 234 (466)
T ss_dssp ECCSSCCCC---------CGGGGGCTTCS-EEECCSSCC-CCC---G--GGGGCTTCCEEECCSSCCC------------
T ss_pred ECcCCcCCC---------ChhhccCCCCC-EEEecCCcc-ccc---c--cccccCCCCEEECCCCCcc------------
Confidence 876554333 23456666676 777776432 221 1 1567889999999987532
Q ss_pred cchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccce
Q 037953 309 ENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVE 388 (625)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~ 388 (625)
. ...+..+++|+.|++++|..... +. +..+++|+.|++++|. +..++.+..+++|+.|++++|. ++
T Consensus 235 -------~-~~~l~~l~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~-l~ 300 (466)
T 1o6v_A 235 -------D-IGTLASLTNLTDLDLANNQISNL---AP-LSGLTKLTELKLGANQ-ISNISPLAGLTALTNLELNENQ-LE 300 (466)
T ss_dssp -------C-CGGGGGCTTCSEEECCSSCCCCC---GG-GTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSC-CS
T ss_pred -------c-chhhhcCCCCCEEECCCCccccc---hh-hhcCCCCCEEECCCCc-cCccccccCCCccCeEEcCCCc-cc
Confidence 0 13456788999999999887775 43 7788999999999864 5556668889999999999876 44
Q ss_pred eeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCC
Q 037953 389 RVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSST 468 (625)
Q Consensus 389 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 468 (625)
.++. ...+++|+.|+++++. +..+.. +..+++|+.|++++| .++.++ .+..+++
T Consensus 301 ~~~~-------------------~~~l~~L~~L~L~~n~-l~~~~~----~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~ 354 (466)
T 1o6v_A 301 DISP-------------------ISNLKNLTYLTLYFNN-ISDISP----VSSLTKLQRLFFYNN-KVSDVS-SLANLTN 354 (466)
T ss_dssp CCGG-------------------GGGCTTCSEEECCSSC-CSCCGG----GGGCTTCCEEECCSS-CCCCCG-GGTTCTT
T ss_pred Cchh-------------------hcCCCCCCEEECcCCc-CCCchh----hccCccCCEeECCCC-ccCCch-hhccCCC
Confidence 4432 4678899999999874 333322 337899999999986 677774 5677899
Q ss_pred CCEEEEecCcc
Q 037953 469 LKTLRINRCRV 479 (625)
Q Consensus 469 L~~L~l~~c~~ 479 (625)
|+.|++++|+.
T Consensus 355 L~~L~l~~n~l 365 (466)
T 1o6v_A 355 INWLSAGHNQI 365 (466)
T ss_dssp CCEEECCSSCC
T ss_pred CCEEeCCCCcc
Confidence 99999998865
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=4.1e-26 Score=250.74 Aligned_cols=193 Identities=18% Similarity=0.134 Sum_probs=145.0
Q ss_pred EEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-ccccccc
Q 037953 77 LMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGVEKLI 155 (625)
Q Consensus 77 L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~L~ 155 (625)
.+.+++.+..+|..+. ++|++|++++|. +....| ..|+++++|++|+|+ +|.+..++ ..|++++
T Consensus 10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~--l~~~~~---~~~~~l~~L~~L~Ls--------~n~i~~~~~~~~~~l~ 74 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNK--ITYIGH---GDLRACANLQVLILK--------SSRINTIEGDAFYSLG 74 (549)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSC--CCEECS---STTSSCTTCCEEECT--------TSCCCEECTTTTTTCT
T ss_pred EECCCCccccccccCC--CCccEEECcCCc--cCccCh---hhhhcCCcccEEECC--------CCCcCccChhhccccc
Confidence 3455667788887654 899999999975 556667 789999999999999 88877775 6799999
Q ss_pred ccceecC--CCCCCCchh-hcCCCCCceEeecCCCCCCc--cccccccccccceEEecCcc-ccccc-ccCCCccccccC
Q 037953 156 HLRYLKL--NLVGDLPEK-CCELLNLQTLELENSSHFKR--FPQGIGKLINLRHLIFTEDL-LEYMP-KGIEKLTSLRTL 228 (625)
Q Consensus 156 ~L~~L~L--~~l~~lP~~-i~~L~~L~~L~L~~~~~l~~--lp~~l~~L~~L~~L~l~~~~-l~~lp-~~i~~L~~L~~L 228 (625)
+|++|+| |.+..+|.. ++++++|++|++++|. +.. .|..++++++|++|+++.|. ++.+| ..++++++|++|
T Consensus 75 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 153 (549)
T 2z81_A 75 SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNEL 153 (549)
T ss_dssp TCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred cCCEEECCCCccCccCHHHhccCCCCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCee
Confidence 9999999 447777765 9999999999999998 774 56789999999999996665 77887 468999999999
Q ss_pred CceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccc
Q 037953 229 SEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDK 297 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 297 (625)
++..+.... .....+..+++|+ .|.+..... ..... ..+..+++|+.|++++|.+++
T Consensus 154 ~L~~n~l~~-------~~~~~l~~l~~L~-~L~l~~n~~-~~~~~---~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 154 EIKALSLRN-------YQSQSLKSIRDIH-HLTLHLSES-AFLLE---IFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp EEEETTCCE-------ECTTTTTTCSEEE-EEEEECSBS-TTHHH---HHHHSTTTBSEEEEESCBCTT
T ss_pred eccCCcccc-------cChhhhhccccCc-eEecccCcc-cccch---hhHhhcccccEEEccCCcccc
Confidence 988766543 2233444455555 666655332 22222 123456788888888776543
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.94 E-value=2.9e-25 Score=250.44 Aligned_cols=379 Identities=17% Similarity=0.098 Sum_probs=219.6
Q ss_pred CCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
..+++++|++++|.+..+ |..+.++++|++|++++|. +....+ ..|+++++|++|+|+ +|.+..+|
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~l~~---~~~~~l~~L~~L~L~--------~n~l~~~~ 113 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE--LSQLSD---KTFAFCTNLTELHLM--------SNSIQKIK 113 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC--CCCCCT---TTTTTCTTCSEEECC--------SSCCCCCC
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc--cCccCh---hhhccCCCCCEEECC--------CCccCccC
Confidence 357899999999988655 6678899999999999975 444444 579999999999999 88887776
Q ss_pred -cccccccccceecC--CCCCC-CchhhcCCCCCceEeecCCCCCCccccc-c--ccccccceEEecCcccccccc-cCC
Q 037953 149 -NGVEKLIHLRYLKL--NLVGD-LPEKCCELLNLQTLELENSSHFKRFPQG-I--GKLINLRHLIFTEDLLEYMPK-GIE 220 (625)
Q Consensus 149 -~~~~~L~~L~~L~L--~~l~~-lP~~i~~L~~L~~L~L~~~~~l~~lp~~-l--~~L~~L~~L~l~~~~l~~lp~-~i~ 220 (625)
..|+++++|++|++ |.+.. .|..++++++|++|++++|. +..++.. + ..+++|++|+++.|.++.++. .++
T Consensus 114 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 192 (680)
T 1ziw_A 114 NNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGG
T ss_pred hhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhh
Confidence 56999999999999 44544 45678999999999999998 7776654 3 356899999998787776653 355
Q ss_pred CccccccCC---------------------------ceEecCCCCcCCCcccChhccccccc--cccceEEeccCCCCCh
Q 037953 221 KLTSLRTLS---------------------------EFVVASGGGRYGSEACKLEGLRHLNH--LRGSLKVRGLGNVADV 271 (625)
Q Consensus 221 ~L~~L~~L~---------------------------~~~~~~~~~~~~~~~~~l~~l~~L~~--L~~~L~l~~~~~~~~~ 271 (625)
.+.+|+.|. +..+.... .....+.+++. |+ .|+++++. +
T Consensus 193 ~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~-------~~~~~~~~l~~~~L~-~L~Ls~n~----l 260 (680)
T 1ziw_A 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST-------TSNTTFLGLKWTNLT-MLDLSYNN----L 260 (680)
T ss_dssp GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE-------ECTTTTGGGGGSCCC-EEECTTSC----C
T ss_pred hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc-------cChhHhhccCcCCCC-EEECCCCC----c
Confidence 554444332 22111111 11122333332 55 56665532 2
Q ss_pred hHHHHhccCCCCCCCeEEEEEecccccccCCcccccccc---h--------hhHHHHhh----cCCCCCCCcEEEEeccC
Q 037953 272 DEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNEN---A--------AKHEAICE----ALWPPPNLESLEIAGFR 336 (625)
Q Consensus 272 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~----~l~~~~~L~~L~L~~~~ 336 (625)
....+..+..+++|+.|++++|.+.+.....-....... . .....++. .+..+++|+.|++++|.
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 222334566777788887777754432221111000000 0 00001111 45567777777777776
Q ss_pred CCcccCCchhhcccccccEEEEeCCCC-CC--------------------------CC-C-CCCCCCCcceeeccccccc
Q 037953 337 GRKMMLSTNWMASLNMLKKLRLLNCPT-CE--------------------------IM-P-PLGQLPSLEILLIKDMTSV 387 (625)
Q Consensus 337 ~~~~~~~p~~l~~l~~L~~L~L~~c~~-l~--------------------------~l-~-~l~~l~~L~~L~L~~~~~l 387 (625)
..... |.++..+++|++|++++|.. .. .+ | .++.+++|+.|++++|...
T Consensus 341 l~~~~--~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 341 IPGIK--SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp BCCCC--TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred cCCCC--hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 55542 45566777777777766431 11 11 1 2445556666666555433
Q ss_pred eeeC-ccCCCCCCCCCCCCCCCC------CCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCC
Q 037953 388 ERVG-DESLGIANGDHGAPSSSS------VNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLP 460 (625)
Q Consensus 388 ~~l~-~~~~~~~~~~~~~~~~~~------~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp 460 (625)
+.++ ..+.+...+..+.++... ..+..+++|+.|+++++. +..+...+..+..+++|+.|++++| .++.+|
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~ 496 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDLSNN-NIANIN 496 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC-CBCTTCSSCTTTTCTTCCEEECCSS-CCCCCC
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc-ccccccCCcccccCCCCCEEECCCC-CCCcCC
Confidence 3333 222233333333332211 123334555555554432 1111111222446677777777774 455555
Q ss_pred cC-CCCCCCCCEEEEecCc
Q 037953 461 DQ-LLQSSTLKTLRINRCR 478 (625)
Q Consensus 461 ~~-~~~l~~L~~L~l~~c~ 478 (625)
.. +..+++|++|++++|.
T Consensus 497 ~~~~~~l~~L~~L~Ls~N~ 515 (680)
T 1ziw_A 497 DDMLEGLEKLEILDLQHNN 515 (680)
T ss_dssp TTTTTTCTTCCEEECCSSC
T ss_pred hhhhccccccCEEeCCCCC
Confidence 43 5566777777777764
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=2.6e-26 Score=246.23 Aligned_cols=362 Identities=14% Similarity=0.103 Sum_probs=239.8
Q ss_pred CCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-
Q 037953 70 CPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI- 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l- 147 (625)
.++++++|++++|.+..+ |..+.++++|++|++++|.. .....| ..|.++++|++|+|+ +|.+..+
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-~~~i~~---~~~~~l~~L~~L~Ls--------~n~l~~~~ 95 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-GLVIRN---NTFRGLSSLIILKLD--------YNQFLQLE 95 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-TCEECT---TTTTTCTTCCEEECT--------TCTTCEEC
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc-cceECc---ccccccccCCEEeCC--------CCccCccC
Confidence 568899999999999766 67889999999999999752 123345 779999999999999 8887765
Q ss_pred hcccccccccceecC--CCCCC-Cchh--hcCCCCCceEeecCCCCCCcc-ccc-cccccccceEEecCccccccc-ccC
Q 037953 148 LNGVEKLIHLRYLKL--NLVGD-LPEK--CCELLNLQTLELENSSHFKRF-PQG-IGKLINLRHLIFTEDLLEYMP-KGI 219 (625)
Q Consensus 148 p~~~~~L~~L~~L~L--~~l~~-lP~~--i~~L~~L~~L~L~~~~~l~~l-p~~-l~~L~~L~~L~l~~~~l~~lp-~~i 219 (625)
|..|+++++|++|+| |.+.. +|.. +.++++|++|++++|. +..+ |.. ++++++|++|++++|.+..++ ..+
T Consensus 96 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred hhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 778999999999999 44654 4555 8999999999999998 7666 555 889999999999888877654 445
Q ss_pred CCc--cccccCCceEecCCCCcCCCcccC---hhccccccccccceEEeccCCCCChhHHHHhcc---CCCCCCCeEEEE
Q 037953 220 EKL--TSLRTLSEFVVASGGGRYGSEACK---LEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHL---EKKKNLVRLILR 291 (625)
Q Consensus 220 ~~L--~~L~~L~~~~~~~~~~~~~~~~~~---l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l---~~l~~L~~L~l~ 291 (625)
..+ .+|+.|++..+...... ..... ...+..+++|+ .|+++++.- .+..+..+ ....+|+.|+++
T Consensus 175 ~~l~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l----~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 175 LNFQGKHFTLLRLSSITLQDMN--EYWLGWEKCGNPFKNTSIT-TLDLSGNGF----KESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp GGGTTCEEEEEECTTCBCTTCS--TTCTTHHHHCCTTTTCEEE-EEECTTSCC----CHHHHHHHHHHTTTCCEEEEECT
T ss_pred hccccccccccccccCcccccc--hhhccccccccccccceee-eEecCCCcc----cccchhhhhccccccceeeEeec
Confidence 555 45666655444333200 00000 11122345565 677666432 22222222 233678888887
Q ss_pred EecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CC
Q 037953 292 FKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PL 370 (625)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l 370 (625)
.+...+......... ......-.-...++|+.|++++|...... |.++..+++|+.|++++|...+..| .+
T Consensus 248 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 319 (455)
T 3v47_A 248 NSYNMGSSFGHTNFK------DPDNFTFKGLEASGVKTCDLSKSKIFALL--KSVFSHFTDLEQLTLAQNEINKIDDNAF 319 (455)
T ss_dssp TCTTTSCCTTCCSSC------CCCTTTTGGGTTSCCCEEECCSSCCCEEC--TTTTTTCTTCCEEECTTSCCCEECTTTT
T ss_pred cccccccccchhhhc------cCcccccccccccCceEEEecCccccccc--hhhcccCCCCCEEECCCCcccccChhHh
Confidence 663211100000000 00000000012368888998888776643 7778888899999998865444334 47
Q ss_pred CCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEE
Q 037953 371 GQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSI 450 (625)
Q Consensus 371 ~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l 450 (625)
+.+++|++|++++|. ++.++... +..+++|++|+++++. +..+.. ..+..+++|++|++
T Consensus 320 ~~l~~L~~L~Ls~N~-l~~~~~~~-----------------~~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~L~L 378 (455)
T 3v47_A 320 WGLTHLLKLNLSQNF-LGSIDSRM-----------------FENLDKLEVLDLSYNH-IRALGD--QSFLGLPNLKELAL 378 (455)
T ss_dssp TTCTTCCEEECCSSC-CCEECGGG-----------------GTTCTTCCEEECCSSC-CCEECT--TTTTTCTTCCEEEC
T ss_pred cCcccCCEEECCCCc-cCCcChhH-----------------hcCcccCCEEECCCCc-ccccCh--hhccccccccEEEC
Confidence 788899999998875 55554332 5677889999888763 333321 22447888999999
Q ss_pred ecCCCCCcCCcC-CCCCCCCCEEEEecCcchh
Q 037953 451 YGCHKLKSLPDQ-LLQSSTLKTLRINRCRVLE 481 (625)
Q Consensus 451 ~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~L~ 481 (625)
++| .++.+|.. +..+++|++|++++|+.-.
T Consensus 379 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 379 DTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCC-ccccCCHhHhccCCcccEEEccCCCccc
Confidence 884 67777764 4678889999998887543
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.93 E-value=1.2e-25 Score=247.60 Aligned_cols=343 Identities=14% Similarity=0.067 Sum_probs=237.2
Q ss_pred CCCceEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.++++++|++++|.+..++ ..+.++++|++|++++|. +....| +.|.++++|++|+|+ +|.+..+|
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~---~~~~~l~~L~~L~Ls--------~N~l~~lp 116 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR--IRSLDF---HVFLFNQDLEYLDVS--------HNRLQNIS 116 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC--CCEECT---TTTTTCTTCCEEECT--------TSCCCEEC
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCC--CCcCCH---HHhCCCCCCCEEECC--------CCcCCccC
Confidence 4589999999999997776 589999999999999975 556667 889999999999999 99999998
Q ss_pred cccccccccceecC--CCCCCC--chhhcCCCCCceEeecCCCCCCcccccccccccc--ceEEecCccc---ccccccC
Q 037953 149 NGVEKLIHLRYLKL--NLVGDL--PEKCCELLNLQTLELENSSHFKRFPQGIGKLINL--RHLIFTEDLL---EYMPKGI 219 (625)
Q Consensus 149 ~~~~~L~~L~~L~L--~~l~~l--P~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L--~~L~l~~~~l---~~lp~~i 219 (625)
.. .+++|++|++ |.+..+ |..++++++|++|++++|. +.. ..+..+++| ++|+++.|.+ ...|..+
T Consensus 117 ~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l 191 (562)
T 3a79_B 117 CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK-FRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESL 191 (562)
T ss_dssp SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB-CCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc-ccc--CchhhhhhceeeEEEeecccccccccCcccc
Confidence 76 8999999999 447765 4789999999999999998 664 345666666 9999966655 2223333
Q ss_pred CC--------------------------ccccccCC--------------------------------------------
Q 037953 220 EK--------------------------LTSLRTLS-------------------------------------------- 229 (625)
Q Consensus 220 ~~--------------------------L~~L~~L~-------------------------------------------- 229 (625)
.. +++|+.|+
T Consensus 192 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence 22 22233322
Q ss_pred -----------ceEecCCCCcCCCcccChh--ccccccccccceEEeccCCCCChhHHHHhc------------------
Q 037953 230 -----------EFVVASGGGRYGSEACKLE--GLRHLNHLRGSLKVRGLGNVADVDEVKNAH------------------ 278 (625)
Q Consensus 230 -----------~~~~~~~~~~~~~~~~~l~--~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~------------------ 278 (625)
+..+...+ ..+..+- ...+++.|+ .+.+..... ..+......
T Consensus 272 ~~~~~~L~~L~l~~n~l~~----~ip~~~~~~~~~~L~~L~-~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 272 FFWPRPVEYLNIYNLTITE----RIDREEFTYSETALKSLM-IEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHTTSSEEEEEEEEEEECS----CCCCCCCCCCSCSCCEEE-EEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred hhhcccccEEEEeccEeec----cccchhhhcccccchhee-hhhccccee--ecChhhhhhhhccCcceEEEccCCCcc
Confidence 22222111 0111110 002222221 111111100 000000000
Q ss_pred ----cCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhccccccc
Q 037953 279 ----LEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLK 354 (625)
Q Consensus 279 ----l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~ 354 (625)
...+++|++|++++|.++ +..+..+..+++|+.|++++|....+...|..+..+++|+
T Consensus 345 ~~~~~~~l~~L~~L~l~~n~l~------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~ 406 (562)
T 3a79_B 345 HMVCPPSPSSFTFLNFTQNVFT------------------DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLE 406 (562)
T ss_dssp CCCCCSSCCCCCEEECCSSCCC------------------TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCC
T ss_pred cccCccCCCCceEEECCCCccc------------------cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCC
Confidence 155667777777766422 3456678889999999999998876411145678999999
Q ss_pred EEEEeCCCCCCCCC--CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCC-CCCCeeeccCcccccc
Q 037953 355 KLRLLNCPTCEIMP--PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAF-PKLKELEFSGLQEWED 431 (625)
Q Consensus 355 ~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~l~~ 431 (625)
.|++++|.....+| .+..+++|+.|++++|...+.++ ..+ ++|+.|+++++ .++.
T Consensus 407 ~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------~~l~~~L~~L~L~~N-~l~~ 464 (562)
T 3a79_B 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF---------------------RCLPPKVKVLDLHNN-RIMS 464 (562)
T ss_dssp EEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG---------------------SSCCTTCSEEECCSS-CCCC
T ss_pred EEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh---------------------hhhcCcCCEEECCCC-cCcc
Confidence 99999976555466 37889999999999987322222 233 69999999987 5665
Q ss_pred cccCCCCcccCCCccEEEEecCCCCCcCCcC-CCCCCCCCEEEEecCcchh
Q 037953 432 WDFRKEDITIMPQINSLSIYGCHKLKSLPDQ-LLQSSTLKTLRINRCRVLE 481 (625)
Q Consensus 432 ~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~L~ 481 (625)
++.. +..+++|++|++++| .++.+|.. +..+++|+.|++++|+.--
T Consensus 465 ip~~---~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 465 IPKD---VTHLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCTT---TTSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred cChh---hcCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCCcCC
Confidence 5433 337999999999995 78899987 7889999999999998643
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.93 E-value=9.9e-26 Score=242.30 Aligned_cols=321 Identities=21% Similarity=0.240 Sum_probs=253.1
Q ss_pred CCCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 69 TCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
...+++++|++++|.+..+++ +.++++|++|++++|. ...++ . ++++++|++|+++ +|.+..+|
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~---l~~~~---~-~~~l~~L~~L~L~--------~n~l~~~~ 128 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ---IADIT---P-LANLTNLTGLTLF--------NNQITDID 128 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC---CCCCG---G-GTTCTTCCEEECC--------SSCCCCCG
T ss_pred hhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCc---cccCh---h-hcCCCCCCEEECC--------CCCCCCCh
Confidence 346799999999999988877 8999999999999976 34444 4 8999999999999 88888887
Q ss_pred cccccccccceecC--CCCCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccc
Q 037953 149 NGVEKLIHLRYLKL--NLVGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLR 226 (625)
Q Consensus 149 ~~~~~L~~L~~L~L--~~l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~ 226 (625)
. +.++++|++|++ |.+..+| .++++++|++|++++ . +..++. ++++++|++|++++|.+..++ .+..+++|+
T Consensus 129 ~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~-~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~ 202 (466)
T 1o6v_A 129 P-LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-Q-VTDLKP-LANLTTLERLDISSNKVSDIS-VLAKLTNLE 202 (466)
T ss_dssp G-GTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-S-CCCCGG-GTTCTTCCEEECCSSCCCCCG-GGGGCTTCS
T ss_pred H-HcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-c-ccCchh-hccCCCCCEEECcCCcCCCCh-hhccCCCCC
Confidence 5 999999999999 4488886 599999999999974 3 555654 999999999999888888875 478888888
Q ss_pred cCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccc
Q 037953 227 TLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAI 306 (625)
Q Consensus 227 ~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 306 (625)
.|++..+.... +..+..+++|+ .|.+.++.- ... ..+..+++|+.|++++|.++
T Consensus 203 ~L~l~~n~l~~---------~~~~~~l~~L~-~L~l~~n~l-~~~-----~~l~~l~~L~~L~l~~n~l~---------- 256 (466)
T 1o6v_A 203 SLIATNNQISD---------ITPLGILTNLD-ELSLNGNQL-KDI-----GTLASLTNLTDLDLANNQIS---------- 256 (466)
T ss_dssp EEECCSSCCCC---------CGGGGGCTTCC-EEECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCC----------
T ss_pred EEEecCCcccc---------cccccccCCCC-EEECCCCCc-ccc-----hhhhcCCCCCEEECCCCccc----------
Confidence 88876655443 11245566666 777776432 222 34778899999999988532
Q ss_pred cccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeecccccc
Q 037953 307 SNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTS 386 (625)
Q Consensus 307 ~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~ 386 (625)
..+ .+..+++|+.|++++|..... +. +..+++|+.|++++|. +..++.++.+++|+.|++++|.
T Consensus 257 ---------~~~-~~~~l~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L~~n~- 320 (466)
T 1o6v_A 257 ---------NLA-PLSGLTKLTELKLGANQISNI---SP-LAGLTALTNLELNENQ-LEDISPISNLKNLTYLTLYFNN- 320 (466)
T ss_dssp ---------CCG-GGTTCTTCSEEECCSSCCCCC---GG-GTTCTTCSEEECCSSC-CSCCGGGGGCTTCSEEECCSSC-
T ss_pred ---------cch-hhhcCCCCCEEECCCCccCcc---cc-ccCCCccCeEEcCCCc-ccCchhhcCCCCCCEEECcCCc-
Confidence 111 267789999999999988776 54 7899999999999964 5666668899999999999986
Q ss_pred ceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCC
Q 037953 387 VERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQS 466 (625)
Q Consensus 387 l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l 466 (625)
+..++. ...+++|+.|+++++ .+..+. .+..+++|+.|++++| .+..+++ +..+
T Consensus 321 l~~~~~-------------------~~~l~~L~~L~l~~n-~l~~~~----~l~~l~~L~~L~l~~n-~l~~~~~-~~~l 374 (466)
T 1o6v_A 321 ISDISP-------------------VSSLTKLQRLFFYNN-KVSDVS----SLANLTNINWLSAGHN-QISDLTP-LANL 374 (466)
T ss_dssp CSCCGG-------------------GGGCTTCCEEECCSS-CCCCCG----GGTTCTTCCEEECCSS-CCCBCGG-GTTC
T ss_pred CCCchh-------------------hccCccCCEeECCCC-ccCCch----hhccCCCCCEEeCCCC-ccCccch-hhcC
Confidence 444332 467899999999987 444442 2447999999999997 4666555 7789
Q ss_pred CCCCEEEEecCcc
Q 037953 467 STLKTLRINRCRV 479 (625)
Q Consensus 467 ~~L~~L~l~~c~~ 479 (625)
++|+.|++++|+.
T Consensus 375 ~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 375 TRITQLGLNDQAW 387 (466)
T ss_dssp TTCCEEECCCEEE
T ss_pred CCCCEEeccCCcc
Confidence 9999999999964
No 25
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=6.3e-26 Score=234.16 Aligned_cols=300 Identities=19% Similarity=0.187 Sum_probs=185.0
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
.+++++|++.++.+..++. +..+++|++|++++|. ...+| . +.++++|++|+++ +|.+..+| .
T Consensus 43 l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~---i~~~~---~-~~~l~~L~~L~L~--------~n~i~~~~-~ 105 (347)
T 4fmz_A 43 LESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQ---ITDIS---P-LSNLVKLTNLYIG--------TNKITDIS-A 105 (347)
T ss_dssp HTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSC---CCCCG---G-GTTCTTCCEEECC--------SSCCCCCG-G
T ss_pred cccccEEEEeCCccccchh-hhhcCCccEEEccCCc---cccch---h-hhcCCcCCEEEcc--------CCcccCch-H
Confidence 3456666666666655543 5566666666666654 22333 3 6666666666666 55555554 4
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccC
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTL 228 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 228 (625)
+.++++|++|++ .+ +..+|. +.++++|++|++++|..+..++ .+..+++|++|+++++.+..++. ++.+++|+.|
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L 182 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSL 182 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEE
T ss_pred HcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh-hccCCCCCEE
Confidence 666666666666 33 555654 6666666666666665344433 36666666666665555555443 4444444444
Q ss_pred CceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccc
Q 037953 229 SEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISN 308 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 308 (625)
++..+... ... .+..+++|+.|++++|.+.
T Consensus 183 ~l~~n~l~---------------------------------~~~-----~~~~l~~L~~L~l~~n~l~------------ 212 (347)
T 4fmz_A 183 SLNYNQIE---------------------------------DIS-----PLASLTSLHYFTAYVNQIT------------ 212 (347)
T ss_dssp ECTTSCCC---------------------------------CCG-----GGGGCTTCCEEECCSSCCC------------
T ss_pred EccCCccc---------------------------------ccc-----cccCCCccceeecccCCCC------------
Confidence 43222111 110 1445566667776665421
Q ss_pred cchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccce
Q 037953 309 ENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVE 388 (625)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~ 388 (625)
... .+..+++|+.|++++|..... +. +..+++|++|++++| .+..++.+..+++|+.|++++|. ++
T Consensus 213 -------~~~-~~~~~~~L~~L~l~~n~l~~~---~~-~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~ 278 (347)
T 4fmz_A 213 -------DIT-PVANMTRLNSLKIGNNKITDL---SP-LANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-IS 278 (347)
T ss_dssp -------CCG-GGGGCTTCCEEECCSSCCCCC---GG-GTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CC
T ss_pred -------CCc-hhhcCCcCCEEEccCCccCCC---cc-hhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cC
Confidence 011 145677888888888877765 44 778888888888886 45566777888889999998875 55
Q ss_pred eeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCC
Q 037953 389 RVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSST 468 (625)
Q Consensus 389 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~ 468 (625)
.++. ...+++|+.|++++|. +...... .+..+++|++|++++|+ ++.+++ +..+++
T Consensus 279 ~~~~-------------------~~~l~~L~~L~L~~n~-l~~~~~~--~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~ 334 (347)
T 4fmz_A 279 DISV-------------------LNNLSQLNSLFLNNNQ-LGNEDME--VIGGLTNLTTLFLSQNH-ITDIRP-LASLSK 334 (347)
T ss_dssp CCGG-------------------GGGCTTCSEEECCSSC-CCGGGHH--HHHTCTTCSEEECCSSS-CCCCGG-GGGCTT
T ss_pred CChh-------------------hcCCCCCCEEECcCCc-CCCcChh--HhhccccCCEEEccCCc-cccccC-hhhhhc
Confidence 4431 5677889999988874 2222211 13368899999999974 666655 667899
Q ss_pred CCEEEEecCc
Q 037953 469 LKTLRINRCR 478 (625)
Q Consensus 469 L~~L~l~~c~ 478 (625)
|++|++++|+
T Consensus 335 L~~L~l~~N~ 344 (347)
T 4fmz_A 335 MDSADFANQV 344 (347)
T ss_dssp CSEESSSCC-
T ss_pred cceeehhhhc
Confidence 9999999886
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=6.8e-25 Score=252.71 Aligned_cols=279 Identities=20% Similarity=0.155 Sum_probs=191.5
Q ss_pred cCCCCceEEEEEEcCCC-Ccc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh
Q 037953 68 NTCPEKLRHLMLVLGYE-APS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN 145 (625)
Q Consensus 68 ~~~~~~lr~L~l~~~~~-~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~ 145 (625)
-....+++.|++++|.. ..+ |..+.++++|++|+|++|. +....| ..|+++++|++|+|+ +|.+.
T Consensus 44 ~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~--l~~~~p---~~~~~l~~L~~L~Ls--------~n~l~ 110 (844)
T 3j0a_A 44 FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK--IYFLHP---DAFQGLFHLFELRLY--------FCGLS 110 (844)
T ss_dssp CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC--CCEECT---TSSCSCSSCCCEECT--------TCCCS
T ss_pred CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc--CcccCH---hHccCCcccCEeeCc--------CCCCC
Confidence 34567899999999954 566 6789999999999999975 556667 889999999999999 88865
Q ss_pred h-hhcc--cccccccceecC--CCCCCC--chhhcCCCCCceEeecCCCCCCccccccccc--cccceEEecCcccc-cc
Q 037953 146 E-ILNG--VEKLIHLRYLKL--NLVGDL--PEKCCELLNLQTLELENSSHFKRFPQGIGKL--INLRHLIFTEDLLE-YM 215 (625)
Q Consensus 146 ~-lp~~--~~~L~~L~~L~L--~~l~~l--P~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L--~~L~~L~l~~~~l~-~l 215 (625)
. +|.. |+++++|++|+| |.+..+ +..++++++|++|++++|..-...|..++.+ ++|+.|+++.|.+. ..
T Consensus 111 ~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~ 190 (844)
T 3j0a_A 111 DAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV 190 (844)
T ss_dssp SCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC
T ss_pred cccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCcccccc
Confidence 4 5554 999999999999 446555 3579999999999999998333456678877 89999999666554 45
Q ss_pred cccCCCccc------cccCCceEecCCCCcCCCccc-----------------------------Chhccccc--ccccc
Q 037953 216 PKGIEKLTS------LRTLSEFVVASGGGRYGSEAC-----------------------------KLEGLRHL--NHLRG 258 (625)
Q Consensus 216 p~~i~~L~~------L~~L~~~~~~~~~~~~~~~~~-----------------------------~l~~l~~L--~~L~~ 258 (625)
|..++.+.+ |+.|++..+............ ....+..+ ++|+
T Consensus 191 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~- 269 (844)
T 3j0a_A 191 SVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR- 269 (844)
T ss_dssp CCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCC-
T ss_pred ccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCcc-
Confidence 555655554 777776655322100000000 00001111 3444
Q ss_pred ceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCC
Q 037953 259 SLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGR 338 (625)
Q Consensus 259 ~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 338 (625)
.|++++. .+....+..+..+++|+.|++++|.++ ...+..+..+++|+.|++++|...
T Consensus 270 ~L~Ls~n----~l~~~~~~~~~~l~~L~~L~L~~n~i~------------------~~~~~~~~~l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 270 HLDLSHG----FVFSLNSRVFETLKDLKVLNLAYNKIN------------------KIADEAFYGLDNLQVLNLSYNLLG 327 (844)
T ss_dssp EEECTTC----CCCEECSCCSSSCCCCCEEEEESCCCC------------------EECTTTTTTCSSCCEEEEESCCCS
T ss_pred EEECCCC----cccccChhhhhcCCCCCEEECCCCcCC------------------CCChHHhcCCCCCCEEECCCCCCC
Confidence 5555442 222233455778888999999887532 222345667788888888887765
Q ss_pred cccCCchhhcccccccEEEEeCCCCCCCCC--CCCCCCCcceeeccccc
Q 037953 339 KMMLSTNWMASLNMLKKLRLLNCPTCEIMP--PLGQLPSLEILLIKDMT 385 (625)
Q Consensus 339 ~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~ 385 (625)
... |..+..+++|+.|++++|. +..++ .++.+++|+.|++++|.
T Consensus 328 ~~~--~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 328 ELY--SSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp CCC--SCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCEEEEETCC
T ss_pred ccC--HHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCEEECCCCC
Confidence 542 6677788888888888763 44444 36777888888887764
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=2.9e-25 Score=237.19 Aligned_cols=275 Identities=17% Similarity=0.192 Sum_probs=136.2
Q ss_pred HhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccc
Q 037953 120 FDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIG 197 (625)
Q Consensus 120 ~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~ 197 (625)
++.+++|++|+++ +|.+..+| ++.+++|++|++ .+ +..+| ++++++|++|++++|. ++.+| ++
T Consensus 60 l~~l~~L~~L~Ls--------~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~-l~~l~--~~ 124 (457)
T 3bz5_A 60 IEKLTGLTKLICT--------SNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK-LTKLD--VS 124 (457)
T ss_dssp GGGCTTCSEEECC--------SSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC-CSCCC--CT
T ss_pred hcccCCCCEEEcc--------CCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc-CCeec--CC
Confidence 4445555555555 44444443 444555555555 22 44443 4445555555555554 44443 44
Q ss_pred cccccceEEecCcccccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHh
Q 037953 198 KLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNA 277 (625)
Q Consensus 198 ~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~ 277 (625)
++++|++|+++.|.++.+| ++.+++|+.|++..+...+ .. .+..+++|+ .|++++.. +...
T Consensus 125 ~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~------~~---~~~~l~~L~-~L~ls~n~-l~~l------ 185 (457)
T 3bz5_A 125 QNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKIT------KL---DVTPQTQLT-TLDCSFNK-ITEL------ 185 (457)
T ss_dssp TCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCC------CC---CCTTCTTCC-EEECCSSC-CCCC------
T ss_pred CCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccc------cc---ccccCCcCC-EEECCCCc-ccee------
Confidence 4555555555444444442 4444444444433322111 01 122233333 34443321 1111
Q ss_pred ccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEE
Q 037953 278 HLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLR 357 (625)
Q Consensus 278 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~ 357 (625)
.+..+++|+.|++++|.++ .+ .+..+++|+.|++++|....+ | +..+++|+.|+
T Consensus 186 ~l~~l~~L~~L~l~~N~l~-------------------~~--~l~~l~~L~~L~Ls~N~l~~i---p--~~~l~~L~~L~ 239 (457)
T 3bz5_A 186 DVSQNKLLNRLNCDTNNIT-------------------KL--DLNQNIQLTFLDCSSNKLTEI---D--VTPLTQLTYFD 239 (457)
T ss_dssp CCTTCTTCCEEECCSSCCS-------------------CC--CCTTCTTCSEEECCSSCCSCC---C--CTTCTTCSEEE
T ss_pred ccccCCCCCEEECcCCcCC-------------------ee--ccccCCCCCEEECcCCccccc---C--ccccCCCCEEE
Confidence 1445555666666555321 00 244556666666666655554 4 45566666666
Q ss_pred EeCCCCCCCCCCCCCCCCcceeec----------cccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcc
Q 037953 358 LLNCPTCEIMPPLGQLPSLEILLI----------KDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQ 427 (625)
Q Consensus 358 L~~c~~l~~l~~l~~l~~L~~L~L----------~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 427 (625)
+++|. ++.+| .+.+++|+.|++ ++|..++.+| .+.+++|+.|+++++.
T Consensus 240 l~~N~-l~~~~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--------------------~~~l~~L~~L~Ls~n~ 297 (457)
T 3bz5_A 240 CSVNP-LTELD-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--------------------AEGCRKIKELDVTHNT 297 (457)
T ss_dssp CCSSC-CSCCC-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--------------------CTTCTTCCCCCCTTCT
T ss_pred eeCCc-CCCcC-HHHCCCCCEEeccCCCCCEEECCCCccCCccc--------------------ccccccCCEEECCCCc
Confidence 66543 33333 333444444433 3333332222 3456777777777766
Q ss_pred cccccccCCC-----CcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcc
Q 037953 428 EWEDWDFRKE-----DITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRV 479 (625)
Q Consensus 428 ~l~~~~~~~~-----~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 479 (625)
.++.++.... .+..+++|+.|++++| .++.++ +.++++|+.|++++|..
T Consensus 298 ~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 298 QLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC--CTTCTTCSEEECCSSCC
T ss_pred ccceeccCCCcceEechhhcccCCEEECCCC-cccccc--cccCCcCcEEECCCCCC
Confidence 5544432211 1335688899999884 677775 67789999999988853
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=2.1e-25 Score=230.31 Aligned_cols=279 Identities=21% Similarity=0.204 Sum_probs=198.4
Q ss_pred CCCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 69 TCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
...+++++|++++|.+..++. +..+++|++|++++|. ...+| .+.++++|++|+++ +|.+..+|
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~---i~~~~----~~~~l~~L~~L~l~--------~n~i~~~~ 126 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK---ITDIS----ALQNLTNLRELYLN--------EDNISDIS 126 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC---CCCCG----GGTTCTTCSEEECT--------TSCCCCCG
T ss_pred hhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc---ccCch----HHcCCCcCCEEECc--------CCcccCch
Confidence 447799999999999988877 8999999999999986 33344 48999999999999 88888887
Q ss_pred cccccccccceecC--CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCcccc
Q 037953 149 NGVEKLIHLRYLKL--NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSL 225 (625)
Q Consensus 149 ~~~~~L~~L~~L~L--~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L 225 (625)
. +..+++|++|++ |. ...++ .+..+++|++|++++|. +..++. ++.+++|++|++++|.+..++. +..+++|
T Consensus 127 ~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 201 (347)
T 4fmz_A 127 P-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQIEDISP-LASLTSL 201 (347)
T ss_dssp G-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTC
T ss_pred h-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCccccccc-ccCCCcc
Confidence 5 999999999999 54 55554 59999999999999998 888775 8999999999998888888765 6666777
Q ss_pred ccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccc
Q 037953 226 RTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEA 305 (625)
Q Consensus 226 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 305 (625)
+.|++..+.... +.. +..+++|+.|++++|.++
T Consensus 202 ~~L~l~~n~l~~---------~~~-----------------------------~~~~~~L~~L~l~~n~l~--------- 234 (347)
T 4fmz_A 202 HYFTAYVNQITD---------ITP-----------------------------VANMTRLNSLKIGNNKIT--------- 234 (347)
T ss_dssp CEEECCSSCCCC---------CGG-----------------------------GGGCTTCCEEECCSSCCC---------
T ss_pred ceeecccCCCCC---------Cch-----------------------------hhcCCcCCEEEccCCccC---------
Confidence 666654332221 111 233445555555554321
Q ss_pred ccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccc
Q 037953 306 ISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMT 385 (625)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~ 385 (625)
..+ .+..+++|+.|++++|....+ ..+..+++|+.|++++| .+..++.+..+++|+.|++++|.
T Consensus 235 ----------~~~-~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 235 ----------DLS-PLANLSQLTWLEIGTNQISDI----NAVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp ----------CCG-GGTTCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC
T ss_pred ----------CCc-chhcCCCCCEEECCCCccCCC----hhHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc
Confidence 111 155666777777777766553 35667777777777775 45555666777788888887765
Q ss_pred cceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCC
Q 037953 386 SVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCH 454 (625)
Q Consensus 386 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 454 (625)
+...+... +..+++|+.|++++++ +..+.. +..+++|++|++++|+
T Consensus 299 -l~~~~~~~-----------------l~~l~~L~~L~L~~n~-l~~~~~----~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 299 -LGNEDMEV-----------------IGGLTNLTTLFLSQNH-ITDIRP----LASLSKMDSADFANQV 344 (347)
T ss_dssp -CCGGGHHH-----------------HHTCTTCSEEECCSSS-CCCCGG----GGGCTTCSEESSSCC-
T ss_pred -CCCcChhH-----------------hhccccCCEEEccCCc-cccccC----hhhhhccceeehhhhc
Confidence 33332211 4567788888888764 333322 2367888888888864
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.92 E-value=2.6e-25 Score=238.35 Aligned_cols=366 Identities=15% Similarity=0.152 Sum_probs=255.8
Q ss_pred EEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh-hh-hccccc
Q 037953 76 HLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN-EI-LNGVEK 153 (625)
Q Consensus 76 ~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~-~l-p~~~~~ 153 (625)
.+...++++..+|. + .++|++|++++|. +....| ..|+++++|++|+|+ +|.+. .+ |..|.+
T Consensus 14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~--i~~~~~---~~~~~l~~L~~L~L~--------~n~~~~~i~~~~~~~ 77 (455)
T 3v47_A 14 NAICINRGLHQVPE-L--PAHVNYVDLSLNS--IAELNE---TSFSRLQDLQFLKVE--------QQTPGLVIRNNTFRG 77 (455)
T ss_dssp EEECCSSCCSSCCC-C--CTTCCEEECCSSC--CCEECT---TTTSSCTTCCEEECC--------CCSTTCEECTTTTTT
T ss_pred ccCcCCCCcccCCC-C--CCccCEEEecCCc--cCcCCh---hHhccCccccEEECc--------CCcccceECcccccc
Confidence 45566667777876 3 3889999999975 556667 889999999999999 88764 55 556999
Q ss_pred ccccceecC--CCCCCC-chhhcCCCCCceEeecCCCCCCc-cccc--cccccccceEEecCcccccc-ccc-CCCcccc
Q 037953 154 LIHLRYLKL--NLVGDL-PEKCCELLNLQTLELENSSHFKR-FPQG--IGKLINLRHLIFTEDLLEYM-PKG-IEKLTSL 225 (625)
Q Consensus 154 L~~L~~L~L--~~l~~l-P~~i~~L~~L~~L~L~~~~~l~~-lp~~--l~~L~~L~~L~l~~~~l~~l-p~~-i~~L~~L 225 (625)
+++|++|+| |.+..+ |..++++++|++|++++|. +.. +|.. ++++++|++|++++|.+..+ |.. ++++++|
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 999999999 446555 7889999999999999998 664 5555 89999999999988888877 444 7889999
Q ss_pred ccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCC--C--hhHHHHhccCCCCCCCeEEEEEecccccccC
Q 037953 226 RTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVA--D--VDEVKNAHLEKKKNLVRLILRFKDIDKAVKR 301 (625)
Q Consensus 226 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~--~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 301 (625)
++|++..+.... ..+..+..+.. .+|+ .+.+.++.-.. . ........+..+++|+.|++++|.+.
T Consensus 157 ~~L~L~~n~l~~----~~~~~l~~l~~-~~L~-~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~----- 225 (455)
T 3v47_A 157 HVLDLTFNKVKS----ICEEDLLNFQG-KHFT-LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK----- 225 (455)
T ss_dssp CEEECTTCCBSC----CCTTTSGGGTT-CEEE-EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC-----
T ss_pred cEEeCCCCcccc----cChhhhhcccc-cccc-ccccccCcccccchhhccccccccccccceeeeEecCCCccc-----
Confidence 999877665443 11223333311 2344 45554432111 0 11112223456688999999988532
Q ss_pred CcccccccchhhHHHHhhc---CCCCCCCcEEEEeccCCCccc--------CCchhhc--ccccccEEEEeCCCCCCCCC
Q 037953 302 WPEAISNENAAKHEAICEA---LWPPPNLESLEIAGFRGRKMM--------LSTNWMA--SLNMLKKLRLLNCPTCEIMP 368 (625)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~---l~~~~~L~~L~L~~~~~~~~~--------~~p~~l~--~l~~L~~L~L~~c~~l~~l~ 368 (625)
...+.. ....++|+.|+++++...... ..+..+. ..++|+.|++++|...+..|
T Consensus 226 -------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 226 -------------ESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp -------------HHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred -------------ccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccch
Confidence 222222 223478999999877433210 0011122 34689999999976555555
Q ss_pred -CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccE
Q 037953 369 -PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINS 447 (625)
Q Consensus 369 -~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~ 447 (625)
.++.+++|+.|++++|. ++.++... +..+++|+.|+++++. +..+.. ..+..+++|++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~-l~~~~~~~-----------------~~~l~~L~~L~Ls~N~-l~~~~~--~~~~~l~~L~~ 351 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNE-INKIDDNA-----------------FWGLTHLLKLNLSQNF-LGSIDS--RMFENLDKLEV 351 (455)
T ss_dssp TTTTTCTTCCEEECTTSC-CCEECTTT-----------------TTTCTTCCEEECCSSC-CCEECG--GGGTTCTTCCE
T ss_pred hhcccCCCCCEEECCCCc-ccccChhH-----------------hcCcccCCEEECCCCc-cCCcCh--hHhcCcccCCE
Confidence 48899999999999987 55554322 5678999999999873 344322 12447999999
Q ss_pred EEEecCCCCCcC-CcCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCCCC
Q 037953 448 LSIYGCHKLKSL-PDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERGPG 505 (625)
Q Consensus 448 L~l~~c~~l~~l-p~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~~~ 505 (625)
|++++| .++.+ |..+..+++|++|++++|. +++++...+..+.++..+.+.++...
T Consensus 352 L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 352 LDLSYN-HIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp EECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCC-cccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCcc
Confidence 999997 55554 7788889999999999985 55666444567778888888776543
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.92 E-value=6.3e-25 Score=230.49 Aligned_cols=302 Identities=18% Similarity=0.163 Sum_probs=190.1
Q ss_pred cCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-ccccccccceecC--CCCCCCc
Q 037953 93 NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHLRYLKL--NLVGDLP 169 (625)
Q Consensus 93 ~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L~~L~L--~~l~~lP 169 (625)
.++++++|+++++. +...++ ..|.++++|++|+++ +|.+..+|. .|+.+++|++|+| |.+..+|
T Consensus 43 ~l~~l~~l~l~~~~--l~~l~~---~~~~~l~~L~~L~L~--------~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNST--MRKLPA---ALLDSFRQVELLNLN--------DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109 (390)
T ss_dssp GGCCCSEEEEESCE--ESEECT---HHHHHCCCCSEEECT--------TSCCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred ccCCceEEEecCCc--hhhCCh---hHhcccccCcEEECC--------CCcccccChhhccCCCCcCEEECCCCCCCcCC
Confidence 35666666666643 333333 455666666666666 666555543 5666666666666 3355543
Q ss_pred -hhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccccc-cCCCccccccCCceEecCCCCcCCCcccC
Q 037953 170 -EKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPK-GIEKLTSLRTLSEFVVASGGGRYGSEACK 246 (625)
Q Consensus 170 -~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~ 246 (625)
..++++++|++|++++|. ++.+|.. ++++++|++|+++.|.+..++. .++.+++|++|++..+.... ..
T Consensus 110 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~ 181 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-------VD 181 (390)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-------CC
T ss_pred HHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-------cc
Confidence 335666666666666666 6666655 3666666666666666655543 35666666666654443322 12
Q ss_pred hhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCC
Q 037953 247 LEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPN 326 (625)
Q Consensus 247 l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (625)
++ .++.|+ .+.+.+.. . ..+....+|+.|++++|.+. .++ ...+++
T Consensus 182 ~~---~l~~L~-~L~l~~n~----l-----~~~~~~~~L~~L~l~~n~l~-------------------~~~--~~~~~~ 227 (390)
T 3o6n_A 182 LS---LIPSLF-HANVSYNL----L-----STLAIPIAVEELDASHNSIN-------------------VVR--GPVNVE 227 (390)
T ss_dssp GG---GCTTCS-EEECCSSC----C-----SEEECCSSCSEEECCSSCCC-------------------EEE--CCCCSS
T ss_pred cc---cccccc-eeeccccc----c-----cccCCCCcceEEECCCCeee-------------------ecc--cccccc
Confidence 22 233333 44443311 1 11233457888888877422 111 123468
Q ss_pred CcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCC
Q 037953 327 LESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAP 405 (625)
Q Consensus 327 L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~ 405 (625)
|+.|++++|.... +.++..+++|++|++++|...+..| .++.+++|+.|++++|. ++.++..
T Consensus 228 L~~L~l~~n~l~~----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~------------ 290 (390)
T 3o6n_A 228 LTILKLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY------------ 290 (390)
T ss_dssp CCEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECS------------
T ss_pred ccEEECCCCCCcc----cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcc------------
Confidence 9999999988776 5678889999999999865443334 47889999999999875 6666543
Q ss_pred CCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcc
Q 037953 406 SSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRV 479 (625)
Q Consensus 406 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~ 479 (625)
...+++|+.|+++++ .+..++.. +..+++|++|++++| .++.+| +..+++|++|++++|+.
T Consensus 291 ------~~~l~~L~~L~L~~n-~l~~~~~~---~~~l~~L~~L~L~~N-~i~~~~--~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 291 ------GQPIPTLKVLDLSHN-HLLHVERN---QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp ------SSCCTTCCEEECCSS-CCCCCGGG---HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCE
T ss_pred ------cCCCCCCCEEECCCC-cceecCcc---ccccCcCCEEECCCC-ccceeC--chhhccCCEEEcCCCCc
Confidence 456889999999987 34444322 336899999999995 577776 55688999999999875
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=2.4e-24 Score=232.34 Aligned_cols=311 Identities=19% Similarity=0.197 Sum_probs=212.4
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hccccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVEK 153 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~ 153 (625)
+.+..+++.+..+|..+. +++++|++++|. +....| ..|.++++|++|+|+ +|.+..+ |..|++
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~--l~~~~~---~~~~~l~~L~~L~L~--------~n~i~~~~~~~~~~ 78 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNR--IKTLNQ---DEFASFPHLEELELN--------ENIVSAVEPGAFNN 78 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSC--CCEECT---TTTTTCTTCCEEECT--------TSCCCEECTTTTTT
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCc--cceECH---hHccCCCCCCEEECC--------CCccCEeChhhhhC
Confidence 345666667777777654 689999999965 455556 778999999999999 8887766 677899
Q ss_pred ccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCcc-ccccccccccceEEecCccccccc-ccCCCccccccC
Q 037953 154 LIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRF-PQGIGKLINLRHLIFTEDLLEYMP-KGIEKLTSLRTL 228 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L 228 (625)
+++|++|+| .+ +..+|.. +.++++|++|+|++|. +..+ |..+.++++|++|+++.|.+..++ ..++.+++|+.|
T Consensus 79 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 79 LFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp CTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc-cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence 999999999 44 8888764 6889999999999998 6654 556888999999999877776664 346666666666
Q ss_pred CceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccc
Q 037953 229 SEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISN 308 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 308 (625)
++..+.... .....+..+++|+.|++++|.+.
T Consensus 158 ~l~~n~l~~------------------------------------~~~~~l~~l~~L~~L~l~~n~i~------------ 189 (477)
T 2id5_A 158 TLEKCNLTS------------------------------------IPTEALSHLHGLIVLRLRHLNIN------------ 189 (477)
T ss_dssp EEESCCCSS------------------------------------CCHHHHTTCTTCCEEEEESCCCC------------
T ss_pred ECCCCcCcc------------------------------------cChhHhcccCCCcEEeCCCCcCc------------
Confidence 654332211 01122445566666666665421
Q ss_pred cchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC--CCCCCCCcceeecccccc
Q 037953 309 ENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP--PLGQLPSLEILLIKDMTS 386 (625)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~ 386 (625)
......+..+++|+.|++++|...... |.......+|+.|++++| .++.+| .+..+++|+.|+|++|.
T Consensus 190 ------~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~- 259 (477)
T 2id5_A 190 ------AIRDYSFKRLYRLKVLEISHWPYLDTM--TPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP- 259 (477)
T ss_dssp ------EECTTCSCSCTTCCEEEEECCTTCCEE--CTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-
T ss_pred ------EeChhhcccCcccceeeCCCCcccccc--CcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCc-
Confidence 111234566677777777766543321 555555567888888875 455566 36778888888888765
Q ss_pred ceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcC-CCC
Q 037953 387 VERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQ-LLQ 465 (625)
Q Consensus 387 l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~ 465 (625)
++.++... +..+++|+.|+++++. +..+. +..+..+++|+.|++++| .++.+|.. +..
T Consensus 260 l~~~~~~~-----------------~~~l~~L~~L~L~~n~-l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~ 318 (477)
T 2id5_A 260 ISTIEGSM-----------------LHELLRLQEIQLVGGQ-LAVVE--PYAFRGLNYLRVLNVSGN-QLTTLEESVFHS 318 (477)
T ss_dssp CCEECTTS-----------------CTTCTTCCEEECCSSC-CSEEC--TTTBTTCTTCCEEECCSS-CCSCCCGGGBSC
T ss_pred CCccChhh-----------------ccccccCCEEECCCCc-cceEC--HHHhcCcccCCEEECCCC-cCceeCHhHcCC
Confidence 55555432 4567788888888763 33332 122447888999999985 67777764 466
Q ss_pred CCCCCEEEEecCcch
Q 037953 466 SSTLKTLRINRCRVL 480 (625)
Q Consensus 466 l~~L~~L~l~~c~~L 480 (625)
+++|++|++++|+..
T Consensus 319 l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 319 VGNLETLILDSNPLA 333 (477)
T ss_dssp GGGCCEEECCSSCEE
T ss_pred CcccCEEEccCCCcc
Confidence 888999999888753
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=2.8e-24 Score=225.52 Aligned_cols=300 Identities=14% Similarity=0.104 Sum_probs=233.0
Q ss_pred CCceEEEEEEcCCCCcchhh-hccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-
Q 037953 71 PEKLRHLMLVLGYEAPSLVS-IFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL- 148 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~-~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp- 148 (625)
..+++++++.++.+..+|.. +..+++|++|++++|. +....| ..|..+++|++|+|+ +|.+..+|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~--i~~~~~---~~~~~l~~L~~L~L~--------~n~l~~~~~ 110 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--IEEIDT---YAFAYAHTIQKLYMG--------FNAIRYLPP 110 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC--CCEECT---TTTTTCTTCCEEECC--------SSCCCCCCT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCc--ccccCh---hhccCCCCcCEEECC--------CCCCCcCCH
Confidence 47899999999999888875 6789999999999975 455555 689999999999999 88887774
Q ss_pred cccccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCcccc-ccccccccceEEecCcccccccccCCCccc
Q 037953 149 NGVEKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFTEDLLEYMPKGIEKLTS 224 (625)
Q Consensus 149 ~~~~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~ 224 (625)
..|+++++|++|++ .+ +..+|.. ++++++|++|++++|. +..++. .++++++|++|+++.|.++.++ ++.+++
T Consensus 111 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~ 187 (390)
T 3o6n_A 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPS 187 (390)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTT
T ss_pred HHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc-cCccChhhccCCCCCCEEECCCCcCCccc--cccccc
Confidence 55899999999999 44 9999987 4899999999999998 777654 5899999999999999888874 566778
Q ss_pred cccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcc
Q 037953 225 LRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPE 304 (625)
Q Consensus 225 L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 304 (625)
|+.|++..+.. ..+.....|+ .|.+.+..- ... .....++|+.|++++|.++
T Consensus 188 L~~L~l~~n~l------------~~~~~~~~L~-~L~l~~n~l-~~~------~~~~~~~L~~L~l~~n~l~-------- 239 (390)
T 3o6n_A 188 LFHANVSYNLL------------STLAIPIAVE-ELDASHNSI-NVV------RGPVNVELTILKLQHNNLT-------- 239 (390)
T ss_dssp CSEEECCSSCC------------SEEECCSSCS-EEECCSSCC-CEE------ECCCCSSCCEEECCSSCCC--------
T ss_pred cceeecccccc------------cccCCCCcce-EEECCCCee-eec------cccccccccEEECCCCCCc--------
Confidence 88777653322 2223334555 666665321 111 1223478999999988633
Q ss_pred cccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-CCCCCCcceeeccc
Q 037953 305 AISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-LGQLPSLEILLIKD 383 (625)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~ 383 (625)
....+..+++|+.|++++|...... |..+..+++|+.|++++|. +..++. ...+++|+.|++++
T Consensus 240 ------------~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~ 304 (390)
T 3o6n_A 240 ------------DTAWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSH 304 (390)
T ss_dssp ------------CCGGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECCSSC-CCEEECSSSCCTTCCEEECCS
T ss_pred ------------ccHHHcCCCCccEEECCCCcCCCcC--hhHccccccCCEEECCCCc-CcccCcccCCCCCCCEEECCC
Confidence 1145677899999999999877653 7788899999999999964 555654 67799999999999
Q ss_pred cccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCC
Q 037953 384 MTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCH 454 (625)
Q Consensus 384 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 454 (625)
|. ++.+|.. ...+++|+.|+++++. +..++ +..+++|+.|++++|+
T Consensus 305 n~-l~~~~~~------------------~~~l~~L~~L~L~~N~-i~~~~-----~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 305 NH-LLHVERN------------------QPQFDRLENLYLDHNS-IVTLK-----LSTHHTLKNLTLSHND 350 (390)
T ss_dssp SC-CCCCGGG------------------HHHHTTCSEEECCSSC-CCCCC-----CCTTCCCSEEECCSSC
T ss_pred Cc-ceecCcc------------------ccccCcCCEEECCCCc-cceeC-----chhhccCCEEEcCCCC
Confidence 86 6666644 4678999999999874 44443 3378999999999964
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=3.2e-24 Score=237.65 Aligned_cols=303 Identities=18% Similarity=0.157 Sum_probs=204.6
Q ss_pred cCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-cccccccccceecC--CCCCCCc
Q 037953 93 NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGVEKLIHLRYLKL--NLVGDLP 169 (625)
Q Consensus 93 ~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~L~~L~~L~L--~~l~~lP 169 (625)
.+++++.|++++|. +...++ ..|.++++|++|+|+ +|.+..+| ..|+.+++|++|+| |.+..+|
T Consensus 49 ~l~~l~~l~l~~~~--l~~lp~---~~~~~l~~L~~L~L~--------~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 115 (597)
T 3oja_B 49 TLNNQKIVTFKNST--MRKLPA---ALLDSFRQVELLNLN--------DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 115 (597)
T ss_dssp GGCCCSEEEESSCE--ESEECT---HHHHHCCCCSEEECT--------TSCCCEECTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred cCCCceEEEeeCCC--CCCcCH---HHHccCCCCcEEECC--------CCCCCCCChHHhcCCCCCCEEECCCCcCCCCC
Confidence 35667777777754 344444 566777777777777 66666554 35777777777777 3355555
Q ss_pred h-hhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccccc-cCCCccccccCCceEecCCCCcCCCcccC
Q 037953 170 E-KCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPK-GIEKLTSLRTLSEFVVASGGGRYGSEACK 246 (625)
Q Consensus 170 ~-~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~ 246 (625)
. .++++++|++|+|++|. +..+|.. ++++++|++|++++|.+..+|. .++.+++|++|++..+.... ..
T Consensus 116 ~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-------~~ 187 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-------VD 187 (597)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-------CC
T ss_pred HHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-------cC
Confidence 4 35777777777777776 6677665 4677777777776666666554 46667777777665444332 12
Q ss_pred hhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCC
Q 037953 247 LEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPN 326 (625)
Q Consensus 247 l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (625)
++.+ +.|+ .+.+.+.. + ..+....+|+.|++++|.+. .++. ...++
T Consensus 188 ~~~l---~~L~-~L~l~~n~----l-----~~l~~~~~L~~L~ls~n~l~-------------------~~~~--~~~~~ 233 (597)
T 3oja_B 188 LSLI---PSLF-HANVSYNL----L-----STLAIPIAVEELDASHNSIN-------------------VVRG--PVNVE 233 (597)
T ss_dssp GGGC---TTCS-EEECCSSC----C-----SEEECCTTCSEEECCSSCCC-------------------EEEC--SCCSC
T ss_pred hhhh---hhhh-hhhcccCc----c-----ccccCCchhheeeccCCccc-------------------cccc--ccCCC
Confidence 2333 3333 44444321 1 12344567888888877532 1111 12368
Q ss_pred CcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCC
Q 037953 327 LESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAP 405 (625)
Q Consensus 327 L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~ 405 (625)
|+.|++++|.... +.++..+++|+.|++++|...+..| .++.+++|+.|+|++|. +..+|..
T Consensus 234 L~~L~L~~n~l~~----~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~------------ 296 (597)
T 3oja_B 234 LTILKLQHNNLTD----TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLY------------ 296 (597)
T ss_dssp CCEEECCSSCCCC----CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECS------------
T ss_pred CCEEECCCCCCCC----ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcc------------
Confidence 9999999998776 6788999999999999976544445 48899999999999976 6666543
Q ss_pred CCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcch
Q 037953 406 SSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVL 480 (625)
Q Consensus 406 ~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L 480 (625)
...+++|+.|+++++. +..++.. +..+++|+.|++++| .+..+| +..+++|+.|++++|+.-
T Consensus 297 ------~~~l~~L~~L~Ls~N~-l~~i~~~---~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 297 ------GQPIPTLKVLDLSHNH-LLHVERN---QPQFDRLENLYLDHN-SIVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp ------SSCCTTCCEEECCSSC-CCCCGGG---HHHHTTCSEEECCSS-CCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred ------cccCCCCcEEECCCCC-CCccCcc---cccCCCCCEEECCCC-CCCCcC--hhhcCCCCEEEeeCCCCC
Confidence 4568999999999874 4444322 347899999999996 577776 556899999999999754
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.91 E-value=6.5e-24 Score=226.69 Aligned_cols=302 Identities=16% Similarity=0.116 Sum_probs=230.3
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
.+++++|++++|.+..+| .+..+++|++|++++|. ...+| ++.+++|++|+++ +|.+..+|
T Consensus 41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~---l~~~~-----~~~l~~L~~L~Ls--------~N~l~~~~-- 101 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNN---ITTLD-----LSQNTNLTYLACD--------SNKLTNLD-- 101 (457)
T ss_dssp HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSC---CSCCC-----CTTCTTCSEEECC--------SSCCSCCC--
T ss_pred cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCc---CCeEc-----cccCCCCCEEECc--------CCCCceee--
Confidence 578999999999998876 68999999999999986 33445 8899999999999 88888775
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCc-ccccccccCCCcccccc
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTED-LLEYMPKGIEKLTSLRT 227 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~-~l~~lp~~i~~L~~L~~ 227 (625)
++++++|++|++ .+ +..+| ++++++|++|++++|. ++.+| ++++++|++|+++.| .++.+ .++.+++|+.
T Consensus 102 ~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 174 (457)
T 3bz5_A 102 VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTT 174 (457)
T ss_dssp CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence 899999999999 44 88886 8999999999999998 88875 889999999999665 66666 4778899999
Q ss_pred CCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccccc
Q 037953 228 LSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAIS 307 (625)
Q Consensus 228 L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 307 (625)
|++..+.... . . +..++.|+ .|.+.+..- ... .+..+++|+.|++++|.++
T Consensus 175 L~ls~n~l~~-----l--~---l~~l~~L~-~L~l~~N~l-~~~------~l~~l~~L~~L~Ls~N~l~----------- 225 (457)
T 3bz5_A 175 LDCSFNKITE-----L--D---VSQNKLLN-RLNCDTNNI-TKL------DLNQNIQLTFLDCSSNKLT----------- 225 (457)
T ss_dssp EECCSSCCCC-----C--C---CTTCTTCC-EEECCSSCC-SCC------CCTTCTTCSEEECCSSCCS-----------
T ss_pred EECCCCccce-----e--c---cccCCCCC-EEECcCCcC-Cee------ccccCCCCCEEECcCCccc-----------
Confidence 8877665443 1 1 45555666 677765321 221 3788999999999988633
Q ss_pred ccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhccccccc----------EEEEeCCCCCCCCCCCCCCCCcc
Q 037953 308 NENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLK----------KLRLLNCPTCEIMPPLGQLPSLE 377 (625)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~----------~L~L~~c~~l~~l~~l~~l~~L~ 377 (625)
.++ +..+++|+.|++++|..... | +..+++|+ .|++++|...+.+| .+.+++|+
T Consensus 226 --------~ip--~~~l~~L~~L~l~~N~l~~~---~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~ 289 (457)
T 3bz5_A 226 --------EID--VTPLTQLTYFDCSVNPLTEL---D--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIK 289 (457)
T ss_dssp --------CCC--CTTCTTCSEEECCSSCCSCC---C--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCC
T ss_pred --------ccC--ccccCCCCEEEeeCCcCCCc---C--HHHCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCC
Confidence 122 67889999999999988775 4 33445554 55555555555555 56789999
Q ss_pred eeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCC
Q 037953 378 ILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLK 457 (625)
Q Consensus 378 ~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~ 457 (625)
.|++++|..++.+|.....+. .+ .+..+++|++|+++++ +++.++ ++.+++|+.|++++| .++
T Consensus 290 ~L~Ls~n~~l~~l~~~~~~L~---~L-------~l~~~~~L~~L~L~~N-~l~~l~-----l~~l~~L~~L~l~~N-~l~ 352 (457)
T 3bz5_A 290 ELDVTHNTQLYLLDCQAAGIT---EL-------DLSQNPKLVYLYLNNT-ELTELD-----VSHNTKLKSLSCVNA-HIQ 352 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCS---CC-------CCTTCTTCCEEECTTC-CCSCCC-----CTTCTTCSEEECCSS-CCC
T ss_pred EEECCCCcccceeccCCCcce---Ee-------chhhcccCCEEECCCC-cccccc-----cccCCcCcEEECCCC-CCC
Confidence 999999999998886433222 11 1566789999999876 344442 447999999999994 676
Q ss_pred cCC
Q 037953 458 SLP 460 (625)
Q Consensus 458 ~lp 460 (625)
.+|
T Consensus 353 ~l~ 355 (457)
T 3bz5_A 353 DFS 355 (457)
T ss_dssp BCT
T ss_pred Ccc
Confidence 653
No 35
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=3.6e-23 Score=231.10 Aligned_cols=141 Identities=18% Similarity=0.220 Sum_probs=118.9
Q ss_pred CCCceEEEEEEcCCCCcchh-hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLV-SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.|.++++|++++|.+..+++ +|.++++|++|+|++|. +....| ++|.++++|++|+|+ +|.+..+|
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~--i~~i~~---~~f~~L~~L~~L~Ls--------~N~l~~l~ 116 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIED---GAYQSLSHLSTLILT--------GNPIQSLA 116 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--CCEECT---TTTTTCTTCCEEECT--------TCCCCEEC
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc--CCCcCh---hHhcCCCCCCEEEcc--------CCcCCCCC
Confidence 56789999999999988874 78999999999999976 455566 789999999999999 99998887
Q ss_pred c-ccccccccceecC--CCCCCCch-hhcCCCCCceEeecCCCCCCc--cccccccccccceEEecCcccccccc-cCCC
Q 037953 149 N-GVEKLIHLRYLKL--NLVGDLPE-KCCELLNLQTLELENSSHFKR--FPQGIGKLINLRHLIFTEDLLEYMPK-GIEK 221 (625)
Q Consensus 149 ~-~~~~L~~L~~L~L--~~l~~lP~-~i~~L~~L~~L~L~~~~~l~~--lp~~l~~L~~L~~L~l~~~~l~~lp~-~i~~ 221 (625)
. .|.++++|++|+| |.+..+|. .++++++|++|++++|. +.. +|..++++++|++|+++.|.++.++. .+..
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccccccccccccc
Confidence 5 5899999999999 44888876 48999999999999998 664 57789999999999998888876643 3443
Q ss_pred ccc
Q 037953 222 LTS 224 (625)
Q Consensus 222 L~~ 224 (625)
+.+
T Consensus 196 L~~ 198 (635)
T 4g8a_A 196 LHQ 198 (635)
T ss_dssp HHT
T ss_pred hhh
Confidence 333
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=2.6e-23 Score=224.23 Aligned_cols=312 Identities=18% Similarity=0.162 Sum_probs=229.2
Q ss_pred eEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hcccccccccceecC--CCCCCC-chhhc
Q 037953 98 RSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVEKLIHLRYLKL--NLVGDL-PEKCC 173 (625)
Q Consensus 98 r~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~L~~L~~L~L--~~l~~l-P~~i~ 173 (625)
+.++.+++. ...+| ..+ .+++++|+|+ +|.+..+ |..|.++++|++|+| |.+..+ |..+.
T Consensus 14 ~~v~c~~~~---l~~ip---~~~--~~~l~~L~L~--------~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~ 77 (477)
T 2id5_A 14 RAVLCHRKR---FVAVP---EGI--PTETRLLDLG--------KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN 77 (477)
T ss_dssp TEEECCSCC---CSSCC---SCC--CTTCSEEECC--------SSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred CEEEeCCCC---cCcCC---CCC--CCCCcEEECC--------CCccceECHhHccCCCCCCEEECCCCccCEeChhhhh
Confidence 456666643 34445 322 3689999999 8888777 457999999999999 446665 77899
Q ss_pred CCCCCceEeecCCCCCCccccc-cccccccceEEecCccccccc-ccCCCccccccCCceEecCCCCcCCCcccChhccc
Q 037953 174 ELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMP-KGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLR 251 (625)
Q Consensus 174 ~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 251 (625)
++++|++|+|++|. ++.+|.. ++++++|++|+++.|.+..++ ..+..+++|+.|++..+...
T Consensus 78 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~--------------- 141 (477)
T 2id5_A 78 NLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV--------------- 141 (477)
T ss_dssp TCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC---------------
T ss_pred CCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc---------------
Confidence 99999999999998 8888875 788999999999888777663 44666777766664322111
Q ss_pred cccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEE
Q 037953 252 HLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLE 331 (625)
Q Consensus 252 ~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 331 (625)
...+..+..+++|+.|++++|.++ ......+..+++|+.|+
T Consensus 142 ---------------------~~~~~~~~~l~~L~~L~l~~n~l~------------------~~~~~~l~~l~~L~~L~ 182 (477)
T 2id5_A 142 ---------------------YISHRAFSGLNSLEQLTLEKCNLT------------------SIPTEALSHLHGLIVLR 182 (477)
T ss_dssp ---------------------EECTTSSTTCTTCCEEEEESCCCS------------------SCCHHHHTTCTTCCEEE
T ss_pred ---------------------eeChhhccCCCCCCEEECCCCcCc------------------ccChhHhcccCCCcEEe
Confidence 111224667788999999988532 11223467789999999
Q ss_pred EeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-CCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCC
Q 037953 332 IAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-LGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSV 410 (625)
Q Consensus 332 L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 410 (625)
++++...... +..+..+++|+.|++++|...+.++. .....+|+.|++++|. ++.+|...
T Consensus 183 l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~---------------- 243 (477)
T 2id5_A 183 LRHLNINAIR--DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLA---------------- 243 (477)
T ss_dssp EESCCCCEEC--TTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHH----------------
T ss_pred CCCCcCcEeC--hhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHH----------------
Confidence 9999887762 55778999999999999988887774 5556699999999976 66665432
Q ss_pred CCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCc-CCcCCCCCCCCCEEEEecCcchhhccccccc
Q 037953 411 NNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKS-LPDQLLQSSTLKTLRINRCRVLEEHFKKDRS 489 (625)
Q Consensus 411 ~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~ 489 (625)
+..+++|+.|+++++. +..+.. ..+..+++|+.|++++| .++. .|..+..+++|++|++++| .++.++...+.
T Consensus 244 -~~~l~~L~~L~Ls~n~-l~~~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 317 (477)
T 2id5_A 244 -VRHLVYLRFLNLSYNP-ISTIEG--SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN-QLTTLEESVFH 317 (477)
T ss_dssp -HTTCTTCCEEECCSSC-CCEECT--TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSS-CCSCCCGGGBS
T ss_pred -hcCccccCeeECCCCc-CCccCh--hhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCC-cCceeCHhHcC
Confidence 5678999999999874 444332 22457899999999996 5655 4777888999999999999 45666544556
Q ss_pred ccCCCCceEEecCCCC
Q 037953 490 KISHIPDIQIYERGPG 505 (625)
Q Consensus 490 ~l~~l~~l~~~~~~~~ 505 (625)
.+.++..+.+.++...
T Consensus 318 ~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 318 SVGNLETLILDSNPLA 333 (477)
T ss_dssp CGGGCCEEECCSSCEE
T ss_pred CCcccCEEEccCCCcc
Confidence 6777888887766543
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=1.2e-23 Score=233.15 Aligned_cols=300 Identities=14% Similarity=0.107 Sum_probs=232.9
Q ss_pred CCceEEEEEEcCCCCcchhh-hccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 71 PEKLRHLMLVLGYEAPSLVS-IFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~-~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
..+++.+++.++.+..+|+. +..+++|++|++++|. +....| ..|+.+++|++|+|+ +|.+..+|.
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~--l~~~~~---~~~~~l~~L~~L~L~--------~n~l~~~~~ 116 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--IEEIDT---YAFAYAHTIQKLYMG--------FNAIRYLPP 116 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC--CCEECT---TTTTTCTTCCEEECC--------SSCCCCCCT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC--CCCCCh---HHhcCCCCCCEEECC--------CCcCCCCCH
Confidence 46789999999999888865 6789999999999975 556666 789999999999999 888877754
Q ss_pred -ccccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCcccc-ccccccccceEEecCcccccccccCCCccc
Q 037953 150 -GVEKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFTEDLLEYMPKGIEKLTS 224 (625)
Q Consensus 150 -~~~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~ 224 (625)
.|+++++|++|+| ++ +..+|.. ++++++|++|+|++|. +..+|+ .++++++|++|++++|.++.+| ++.+++
T Consensus 117 ~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~ 193 (597)
T 3oja_B 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPS 193 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTT
T ss_pred HHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc-CCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhh
Confidence 5799999999999 44 8899877 5899999999999998 776655 5999999999999989888875 556778
Q ss_pred cccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcc
Q 037953 225 LRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPE 304 (625)
Q Consensus 225 L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 304 (625)
|+.|++..+. +..+.....|+ .|.+++..- .... ....++|+.|++++|.++
T Consensus 194 L~~L~l~~n~------------l~~l~~~~~L~-~L~ls~n~l-~~~~------~~~~~~L~~L~L~~n~l~-------- 245 (597)
T 3oja_B 194 LFHANVSYNL------------LSTLAIPIAVE-ELDASHNSI-NVVR------GPVNVELTILKLQHNNLT-------- 245 (597)
T ss_dssp CSEEECCSSC------------CSEEECCTTCS-EEECCSSCC-CEEE------CSCCSCCCEEECCSSCCC--------
T ss_pred hhhhhcccCc------------cccccCCchhh-eeeccCCcc-cccc------cccCCCCCEEECCCCCCC--------
Confidence 8877765332 22233344555 666665321 1111 112368999999988643
Q ss_pred cccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-CCCCCCcceeeccc
Q 037953 305 AISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-LGQLPSLEILLIKD 383 (625)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~ 383 (625)
-+..+..+++|+.|++++|...... |..+..+++|+.|+|++|. +..+|. .+.+++|+.|+|++
T Consensus 246 ------------~~~~l~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~ 310 (597)
T 3oja_B 246 ------------DTAWLLNYPGLVEVDLSYNELEKIM--YHPFVKMQRLERLYISNNR-LVALNLYGQPIPTLKVLDLSH 310 (597)
T ss_dssp ------------CCGGGGGCTTCSEEECCSSCCCEEE--SGGGTTCSSCCEEECTTSC-CCEEECSSSCCTTCCEEECCS
T ss_pred ------------CChhhccCCCCCEEECCCCccCCCC--HHHhcCccCCCEEECCCCC-CCCCCcccccCCCCcEEECCC
Confidence 1245677899999999999877653 7889999999999999964 555664 66799999999999
Q ss_pred cccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCC
Q 037953 384 MTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCH 454 (625)
Q Consensus 384 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~ 454 (625)
|. +..+|.. +..+++|+.|+++++. +..++ +..+++|+.|++++|+
T Consensus 311 N~-l~~i~~~------------------~~~l~~L~~L~L~~N~-l~~~~-----~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 311 NH-LLHVERN------------------QPQFDRLENLYLDHNS-IVTLK-----LSTHHTLKNLTLSHND 356 (597)
T ss_dssp SC-CCCCGGG------------------HHHHTTCSEEECCSSC-CCCCC-----CCTTCCCSEEECCSSC
T ss_pred CC-CCccCcc------------------cccCCCCCEEECCCCC-CCCcC-----hhhcCCCCEEEeeCCC
Confidence 86 6666654 5678999999999874 44443 3378999999999975
No 38
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.89 E-value=1.5e-23 Score=223.62 Aligned_cols=182 Identities=13% Similarity=0.020 Sum_probs=104.8
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCce-------------eEEEeecCCCc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCL-------------RALRIEGTDNW 137 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~L-------------r~L~Ls~c~~~ 137 (625)
...++.+.+++|.++.+|+++.++++|++|++++|. +.+.+| ..++++++| ++|+++
T Consensus 10 ~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~--~~~~~p---~~~~~l~~L~~l~l~~c~~~~l~~L~l~----- 79 (454)
T 1jl5_A 10 NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSE--WERNAP---PGNGEQREMAVSRLRDCLDRQAHELELN----- 79 (454)
T ss_dssp ------------------------CCHHHHHHHHHH--HHHTSC---TTSCCCHHHHHHHHHHHHHHTCSEEECT-----
T ss_pred cccchhhhcccCchhhCChhHhcccchhhhhccCCc--ccccCC---cccccchhcchhhhhhhhccCCCEEEec-----
Confidence 467999999999999999999999999999999975 566777 778887765 888998
Q ss_pred cccccchhhhhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccc
Q 037953 138 ELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYM 215 (625)
Q Consensus 138 ~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~l 215 (625)
+|.+..+|.. .++|++|++ ++ +..+|.. +.+|++|++++|. +..+|.. .++|++|++++|.++.+
T Consensus 80 ---~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~---~~~L~~L~L~~n~l~~l 146 (454)
T 1jl5_A 80 ---NLGLSSLPEL---PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNN-LKALSDL---PPLLEYLGVSNNQLEKL 146 (454)
T ss_dssp ---TSCCSCCCSC---CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSC-CSCCCSC---CTTCCEEECCSSCCSSC
T ss_pred ---CCccccCCCC---cCCCCEEEccCCcCCccccc---cCCCcEEECCCCc-cCcccCC---CCCCCEEECcCCCCCCC
Confidence 7777777752 367888888 44 7778753 3678888888876 6666542 25788888877777777
Q ss_pred cccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEec
Q 037953 216 PKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKD 294 (625)
Q Consensus 216 p~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 294 (625)
| .++++++|++|++..+.... .+.. . .+|+ .|.+.+..- .. .+ .+..+++|+.|++++|.
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~~-----lp~~---~---~~L~-~L~L~~n~l-~~----l~-~~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLKK-----LPDL---P---PSLE-FIAAGNNQL-EE----LP-ELQNLPFLTAIYADNNS 206 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSC-----CCCC---C---TTCC-EEECCSSCC-SS----CC-CCTTCTTCCEEECCSSC
T ss_pred c-ccCCCCCCCEEECCCCcCcc-----cCCC---c---cccc-EEECcCCcC-Cc----Cc-cccCCCCCCEEECCCCc
Confidence 7 57777777777765544332 1111 1 2344 555554321 11 11 36677777777777664
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=1.3e-22 Score=207.20 Aligned_cols=229 Identities=22% Similarity=0.312 Sum_probs=147.4
Q ss_pred cCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccc
Q 037953 122 QLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKL 199 (625)
Q Consensus 122 ~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L 199 (625)
...++++|+|+ +|.+..+|..++++++|++|+| ++ +..+|..++++++|++|+|++|. +..+|..++++
T Consensus 79 ~~~~l~~L~L~--------~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l 149 (328)
T 4fcg_A 79 TQPGRVALELR--------SVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASL 149 (328)
T ss_dssp TSTTCCEEEEE--------SSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGC
T ss_pred cccceeEEEcc--------CCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcC
Confidence 34778888888 7777777777777888888888 33 66778778888888888888887 77788788888
Q ss_pred cccceEEe-cCcccccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhc
Q 037953 200 INLRHLIF-TEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAH 278 (625)
Q Consensus 200 ~~L~~L~l-~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~ 278 (625)
++|++|++ +|+..+.+|..++.. . + ...
T Consensus 150 ~~L~~L~L~~n~~~~~~p~~~~~~-----------~---------------------~-------------------~~~ 178 (328)
T 4fcg_A 150 NRLRELSIRACPELTELPEPLAST-----------D---------------------A-------------------SGE 178 (328)
T ss_dssp TTCCEEEEEEETTCCCCCSCSEEE-----------C-----------------------------------------CCC
T ss_pred cCCCEEECCCCCCccccChhHhhc-----------c---------------------c-------------------hhh
Confidence 88888888 445555555443220 0 0 001
Q ss_pred cCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEE
Q 037953 279 LEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRL 358 (625)
Q Consensus 279 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L 358 (625)
+..+++|+.|++++|.+ ..++..+..+++|+.|++++|....+ |..+..+++|++|++
T Consensus 179 ~~~l~~L~~L~L~~n~l-------------------~~lp~~l~~l~~L~~L~L~~N~l~~l---~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGI-------------------RSLPASIANLQNLKSLKIRNSPLSAL---GPAIHHLPKLEELDL 236 (328)
T ss_dssp EEESTTCCEEEEEEECC-------------------CCCCGGGGGCTTCCEEEEESSCCCCC---CGGGGGCTTCCEEEC
T ss_pred hccCCCCCEEECcCCCc-------------------CcchHhhcCCCCCCEEEccCCCCCcC---chhhccCCCCCEEEC
Confidence 33445666666766631 12333444555666666666655554 555556666666666
Q ss_pred eCCCCCCCCCC-CCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCC
Q 037953 359 LNCPTCEIMPP-LGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKE 437 (625)
Q Consensus 359 ~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~ 437 (625)
++|...+.+|. ++.+++|+.|++++|+.++.+|. .
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~------------------------------------------~-- 272 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL------------------------------------------D-- 272 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT------------------------------------------T--
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch------------------------------------------h--
Confidence 66555555552 55555555555555543333322 1
Q ss_pred CcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecC
Q 037953 438 DITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRC 477 (625)
Q Consensus 438 ~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c 477 (625)
+..+++|++|++++|+.++.+|..+.++++|+.+++..+
T Consensus 273 -~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 273 -IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp -GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred -hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 226788888888888888888888888888888877754
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=2.1e-23 Score=211.82 Aligned_cols=246 Identities=17% Similarity=0.173 Sum_probs=197.9
Q ss_pred CceEEEEEEcCCCC---cchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh-hh
Q 037953 72 EKLRHLMLVLGYEA---PSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN-EI 147 (625)
Q Consensus 72 ~~lr~L~l~~~~~~---~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~-~l 147 (625)
.++++|+++++.+. .+|..+.++++|++|+++++ +.+.+.+| ..|+++++|++|+|+ +|.+. .+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~-n~l~~~~p---~~l~~l~~L~~L~Ls--------~n~l~~~~ 117 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI-NNLVGPIP---PAIAKLTQLHYLYIT--------HTNVSGAI 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEE-TTEESCCC---GGGGGCTTCSEEEEE--------EECCEEEC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCC-CcccccCC---hhHhcCCCCCEEECc--------CCeeCCcC
Confidence 68999999999985 68899999999999999952 23566778 889999999999999 88876 78
Q ss_pred hcccccccccceecC-CC-CC-CCchhhcCCCCCceEeecCCCCCC-cccccccccc-ccceEEecCcccc-cccccCCC
Q 037953 148 LNGVEKLIHLRYLKL-NL-VG-DLPEKCCELLNLQTLELENSSHFK-RFPQGIGKLI-NLRHLIFTEDLLE-YMPKGIEK 221 (625)
Q Consensus 148 p~~~~~L~~L~~L~L-~~-l~-~lP~~i~~L~~L~~L~L~~~~~l~-~lp~~l~~L~-~L~~L~l~~~~l~-~lp~~i~~ 221 (625)
|..|+++++|++|++ .+ +. .+|..++++++|++|++++|. +. .+|..+++++ +|++|+++.|.+. .+|..++.
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~ 196 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC
Confidence 888999999999999 44 54 889999999999999999998 66 8999999998 9999999888776 66766766
Q ss_pred ccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccC
Q 037953 222 LTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKR 301 (625)
Q Consensus 222 L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 301 (625)
++ |+.|++..+... +..+..+..+++|+.|++++|.++
T Consensus 197 l~-L~~L~Ls~N~l~------------------------------------~~~~~~~~~l~~L~~L~L~~N~l~----- 234 (313)
T 1ogq_A 197 LN-LAFVDLSRNMLE------------------------------------GDASVLFGSDKNTQKIHLAKNSLA----- 234 (313)
T ss_dssp CC-CSEEECCSSEEE------------------------------------ECCGGGCCTTSCCSEEECCSSEEC-----
T ss_pred Cc-ccEEECcCCccc------------------------------------CcCCHHHhcCCCCCEEECCCCcee-----
Confidence 65 655554322111 112234667788888888877532
Q ss_pred CcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCC-cccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceee
Q 037953 302 WPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGR-KMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILL 380 (625)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~-~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~ 380 (625)
..+..+..+++|+.|++++|... .. |.++..+++|+.|++++|...+.+|..+.+++|+.|+
T Consensus 235 --------------~~~~~~~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~ 297 (313)
T 1ogq_A 235 --------------FDLGKVGLSKNLNGLDLRNNRIYGTL---PQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSA 297 (313)
T ss_dssp --------------CBGGGCCCCTTCCEEECCSSCCEECC---CGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGG
T ss_pred --------------eecCcccccCCCCEEECcCCcccCcC---ChHHhcCcCCCEEECcCCcccccCCCCccccccChHH
Confidence 12233677899999999999887 44 9999999999999999987777888888999999999
Q ss_pred cccccccee
Q 037953 381 IKDMTSVER 389 (625)
Q Consensus 381 L~~~~~l~~ 389 (625)
+++|+.+..
T Consensus 298 l~~N~~lc~ 306 (313)
T 1ogq_A 298 YANNKCLCG 306 (313)
T ss_dssp TCSSSEEES
T ss_pred hcCCCCccC
Confidence 999885544
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.88 E-value=4.1e-22 Score=204.04 Aligned_cols=242 Identities=17% Similarity=0.148 Sum_probs=139.2
Q ss_pred ceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hccc
Q 037953 73 KLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGV 151 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~ 151 (625)
+++.+.+.++.+..+|..+. +++++|++++|. +....+ ..|+++++|++|+|+ +|.+..+ |..|
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~--i~~~~~---~~~~~l~~L~~L~L~--------~n~l~~~~~~~~ 96 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNK--ITEIKD---GDFKNLKNLHTLILI--------NNKISKISPGAF 96 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSC--CCCBCT---TTTTTCTTCCEEECC--------SSCCCCBCTTTT
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCc--CCEeCh---hhhccCCCCCEEECC--------CCcCCeeCHHHh
Confidence 45556666666666665443 566677777654 333333 456667777777777 6665555 5566
Q ss_pred ccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccc---ccccCCCcccc
Q 037953 152 EKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEY---MPKGIEKLTSL 225 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~---lp~~i~~L~~L 225 (625)
+++++|++|++ .+ +..+|..+. ++|++|++++|. +..++.. +.++++|++|+++.|.+.. .|..++++++|
T Consensus 97 ~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 97 APLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp TTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred cCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 66677777777 33 666665554 566777777666 5555443 5666667777665555542 22334444444
Q ss_pred ccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccc
Q 037953 226 RTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEA 305 (625)
Q Consensus 226 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 305 (625)
+.|++..+.... + +..+ .++|+.|++++|.++
T Consensus 174 ~~L~l~~n~l~~---------------------------------l----~~~~--~~~L~~L~l~~n~l~--------- 205 (330)
T 1xku_A 174 SYIRIADTNITT---------------------------------I----PQGL--PPSLTELHLDGNKIT--------- 205 (330)
T ss_dssp CEEECCSSCCCS---------------------------------C----CSSC--CTTCSEEECTTSCCC---------
T ss_pred CEEECCCCcccc---------------------------------C----Cccc--cccCCEEECCCCcCC---------
Confidence 444332211110 0 0001 145666666655321
Q ss_pred ccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeecccc
Q 037953 306 ISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDM 384 (625)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~ 384 (625)
...+..+..+++|+.|++++|...... +.++..+++|+.|++++| .+..+| .+..+++|++|++++|
T Consensus 206 ---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 206 ---------KVDAASLKGLNNLAKLGLSFNSISAVD--NGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp ---------EECTGGGTTCTTCCEEECCSSCCCEEC--TTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS
T ss_pred ---------ccCHHHhcCCCCCCEEECCCCcCceeC--hhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC
Confidence 112345566777777777777766541 346777778888888775 344665 4677778888888776
Q ss_pred ccceeeCcc
Q 037953 385 TSVERVGDE 393 (625)
Q Consensus 385 ~~l~~l~~~ 393 (625)
. ++.++..
T Consensus 274 ~-i~~~~~~ 281 (330)
T 1xku_A 274 N-ISAIGSN 281 (330)
T ss_dssp C-CCCCCTT
T ss_pred c-CCccChh
Confidence 5 5555543
No 42
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=2e-22 Score=205.81 Aligned_cols=220 Identities=20% Similarity=0.209 Sum_probs=138.3
Q ss_pred CCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchh
Q 037953 94 AIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEK 171 (625)
Q Consensus 94 l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~ 171 (625)
.+++++|++++|. ...+| ..+.++++|++|+|+ +|.+..+|..++++++|++|+| ++ +..+|..
T Consensus 80 ~~~l~~L~L~~n~---l~~lp---~~l~~l~~L~~L~L~--------~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~ 145 (328)
T 4fcg_A 80 QPGRVALELRSVP---LPQFP---DQAFRLSHLQHMTID--------AAGLMELPDTMQQFAGLETLTLARNPLRALPAS 145 (328)
T ss_dssp STTCCEEEEESSC---CSSCC---SCGGGGTTCSEEEEE--------SSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG
T ss_pred ccceeEEEccCCC---chhcC---hhhhhCCCCCEEECC--------CCCccchhHHHhccCCCCEEECCCCccccCcHH
Confidence 3566666666654 22444 456666666666666 6665566666666666666666 33 5566666
Q ss_pred hcCCCCCceEeecCCCCCCcccccccc---------ccccceEEecCcccccccccCCCccccccCCceEecCCCCcCCC
Q 037953 172 CCELLNLQTLELENSSHFKRFPQGIGK---------LINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGS 242 (625)
Q Consensus 172 i~~L~~L~~L~L~~~~~l~~lp~~l~~---------L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~ 242 (625)
++++++|++|++++|..++.+|..++. +++|++|++++|.++.+|..++++++|++|++..+....
T Consensus 146 l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~----- 220 (328)
T 4fcg_A 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA----- 220 (328)
T ss_dssp GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-----
T ss_pred HhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-----
Confidence 666667777777666556666665543 667777777666666666666666666666544332211
Q ss_pred cccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCC
Q 037953 243 EACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALW 322 (625)
Q Consensus 243 ~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (625)
... .+..+++|+.|++++|.+ ...++..+.
T Consensus 221 ---l~~-----------------------------~l~~l~~L~~L~Ls~n~~------------------~~~~p~~~~ 250 (328)
T 4fcg_A 221 ---LGP-----------------------------AIHHLPKLEELDLRGCTA------------------LRNYPPIFG 250 (328)
T ss_dssp ---CCG-----------------------------GGGGCTTCCEEECTTCTT------------------CCBCCCCTT
T ss_pred ---Cch-----------------------------hhccCCCCCEEECcCCcc------------------hhhhHHHhc
Confidence 000 122334445555554431 122344566
Q ss_pred CCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-CCCCCCcceeecccc
Q 037953 323 PPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-LGQLPSLEILLIKDM 384 (625)
Q Consensus 323 ~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~ 384 (625)
.+++|+.|++++|...... |.++..+++|+.|+|++|+..+.+|. ++.+++|+.+.+..+
T Consensus 251 ~l~~L~~L~L~~n~~~~~~--p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 251 GRAPLKRLILKDCSNLLTL--PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCCCCCEEECTTCTTCCBC--CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCCCCEEECCCCCchhhc--chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 6777888888776654432 88888889999999998888888884 888888888888753
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=3.1e-22 Score=205.16 Aligned_cols=239 Identities=21% Similarity=0.208 Sum_probs=124.1
Q ss_pred ceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hccc
Q 037953 73 KLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGV 151 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~ 151 (625)
+++.+.++++.+..+|..+. ++|++|++++|. +....| ..|.++++|++|+++ +|.+..+ |..|
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~--i~~~~~---~~~~~l~~L~~L~L~--------~n~l~~~~~~~~ 98 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNND--ISELRK---DDFKGLQHLYALVLV--------NNKISKIHEKAF 98 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSC--CCEECT---TTTTTCTTCCEEECC--------SSCCCEECGGGS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCc--CCccCH---hHhhCCCCCcEEECC--------CCccCccCHhHh
Confidence 34555565555555555432 456666666643 333334 455666666666666 5555544 4456
Q ss_pred ccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccc---ccccCCCcccc
Q 037953 152 EKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEY---MPKGIEKLTSL 225 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~---lp~~i~~L~~L 225 (625)
+++++|++|++ .+ +..+|..+. ++|++|++++|. +..+|.. ++++++|++|++++|.++. .|..++.+ +|
T Consensus 99 ~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L 174 (332)
T 2ft3_A 99 SPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KL 174 (332)
T ss_dssp TTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CC
T ss_pred hCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-cc
Confidence 66666666666 33 555655544 566666666665 5555543 5556666666665555432 22233333 44
Q ss_pred ccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccc
Q 037953 226 RTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEA 305 (625)
Q Consensus 226 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 305 (625)
+.|++..+.... ++..+ .++|+.|++++|.++
T Consensus 175 ~~L~l~~n~l~~-------------------------------------l~~~~--~~~L~~L~l~~n~i~--------- 206 (332)
T 2ft3_A 175 NYLRISEAKLTG-------------------------------------IPKDL--PETLNELHLDHNKIQ--------- 206 (332)
T ss_dssp SCCBCCSSBCSS-------------------------------------CCSSS--CSSCSCCBCCSSCCC---------
T ss_pred CEEECcCCCCCc-------------------------------------cCccc--cCCCCEEECCCCcCC---------
Confidence 444432221111 00001 135555555555321
Q ss_pred ccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC-CCCCCCcceeecccc
Q 037953 306 ISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP-LGQLPSLEILLIKDM 384 (625)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~ 384 (625)
...+..+..+++|+.|++++|...... +.++..+++|+.|++++| .+..+|. ++.+++|+.|++++|
T Consensus 207 ---------~~~~~~l~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N 274 (332)
T 2ft3_A 207 ---------AIELEDLLRYSKLYRLGLGHNQIRMIE--NGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTN 274 (332)
T ss_dssp ---------CCCTTSSTTCTTCSCCBCCSSCCCCCC--TTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSS
T ss_pred ---------ccCHHHhcCCCCCCEEECCCCcCCcCC--hhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCC
Confidence 111234555666666666666655541 345666677777777664 3445553 566667777777665
Q ss_pred ccceeeC
Q 037953 385 TSVERVG 391 (625)
Q Consensus 385 ~~l~~l~ 391 (625)
. ++.++
T Consensus 275 ~-l~~~~ 280 (332)
T 2ft3_A 275 N-ITKVG 280 (332)
T ss_dssp C-CCBCC
T ss_pred C-CCccC
Confidence 4 44444
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=4.4e-22 Score=204.01 Aligned_cols=239 Identities=17% Similarity=0.140 Sum_probs=182.8
Q ss_pred CCCceEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.+++++.|++++|.+..++ ..+.++++|++|++++|. +....| ..|+++++|++|+++ +|.+..+|
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~---~~~~~l~~L~~L~L~--------~n~l~~l~ 118 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK--ISKIHE---KAFSPLRKLQKLYIS--------KNHLVEIP 118 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CCEECG---GGSTTCTTCCEEECC--------SSCCCSCC
T ss_pred CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc--cCccCH---hHhhCcCCCCEEECC--------CCcCCccC
Confidence 3578999999999997775 578999999999999975 456667 889999999999999 99988998
Q ss_pred cccccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCC---ccccccccccccceEEecCcccccccccCCCc
Q 037953 149 NGVEKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFK---RFPQGIGKLINLRHLIFTEDLLEYMPKGIEKL 222 (625)
Q Consensus 149 ~~~~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~---~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L 222 (625)
..+. ++|++|++ ++ +..+|.. +.++++|++|++++|. ++ ..|..+..+ +|++|+++.|.++.+|..+.
T Consensus 119 ~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~-- 192 (332)
T 2ft3_A 119 PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP-- 192 (332)
T ss_dssp SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--
T ss_pred cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCCCccCcccc--
Confidence 7766 89999999 44 8888764 8999999999999998 65 345667777 99999999999999988764
Q ss_pred cccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCC
Q 037953 223 TSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRW 302 (625)
Q Consensus 223 ~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 302 (625)
++|++|++..+.... .. +..+..+++|+.|++++|.++
T Consensus 193 ~~L~~L~l~~n~i~~-------~~-----------------------------~~~l~~l~~L~~L~L~~N~l~------ 230 (332)
T 2ft3_A 193 ETLNELHLDHNKIQA-------IE-----------------------------LEDLLRYSKLYRLGLGHNQIR------ 230 (332)
T ss_dssp SSCSCCBCCSSCCCC-------CC-----------------------------TTSSTTCTTCSCCBCCSSCCC------
T ss_pred CCCCEEECCCCcCCc-------cC-----------------------------HHHhcCCCCCCEEECCCCcCC------
Confidence 677777765443222 00 112444556666666665422
Q ss_pred cccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC--CCC------CC
Q 037953 303 PEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP--LGQ------LP 374 (625)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~--l~~------l~ 374 (625)
...+..+..+++|+.|++++|....+ |.++..+++|+.|++++|. ++.++. +.. .+
T Consensus 231 ------------~~~~~~~~~l~~L~~L~L~~N~l~~l---p~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~ 294 (332)
T 2ft3_A 231 ------------MIENGSLSFLPTLRELHLDNNKLSRV---PAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRA 294 (332)
T ss_dssp ------------CCCTTGGGGCTTCCEEECCSSCCCBC---CTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSC
T ss_pred ------------cCChhHhhCCCCCCEEECCCCcCeec---ChhhhcCccCCEEECCCCC-CCccChhHccccccccccc
Confidence 11122456678899999998888877 8889999999999999854 555542 222 57
Q ss_pred Ccceeeccccc
Q 037953 375 SLEILLIKDMT 385 (625)
Q Consensus 375 ~L~~L~L~~~~ 385 (625)
+|+.|++++|+
T Consensus 295 ~l~~L~l~~N~ 305 (332)
T 2ft3_A 295 YYNGISLFNNP 305 (332)
T ss_dssp CBSEEECCSSS
T ss_pred cccceEeecCc
Confidence 78999999877
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=1.4e-21 Score=208.44 Aligned_cols=295 Identities=19% Similarity=0.171 Sum_probs=155.9
Q ss_pred eEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhccccc
Q 037953 74 LRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEK 153 (625)
Q Consensus 74 lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~ 153 (625)
+++|++.++.+..+|.. .++|++|++++|. +. .+| . .+++|++|+++ +|.+..+|..
T Consensus 73 l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~--l~-~lp---~---~~~~L~~L~l~--------~n~l~~l~~~--- 129 (454)
T 1jl5_A 73 AHELELNNLGLSSLPEL---PPHLESLVASCNS--LT-ELP---E---LPQSLKSLLVD--------NNNLKALSDL--- 129 (454)
T ss_dssp CSEEECTTSCCSCCCSC---CTTCSEEECCSSC--CS-SCC---C---CCTTCCEEECC--------SSCCSCCCSC---
T ss_pred CCEEEecCCccccCCCC---cCCCCEEEccCCc--CC-ccc---c---ccCCCcEEECC--------CCccCcccCC---
Confidence 46667766666655542 3567777777654 22 244 2 23667777777 6665555421
Q ss_pred ccccceecC--CCCCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCCce
Q 037953 154 LIHLRYLKL--NLVGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEF 231 (625)
Q Consensus 154 L~~L~~L~L--~~l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~ 231 (625)
.++|++|++ |.+..+| .++++++|++|++++|. ++.+|..+ .+|++|++++|.++.+| .++++++|+.|++.
T Consensus 130 ~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~ 203 (454)
T 1jl5_A 130 PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYAD 203 (454)
T ss_dssp CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECC
Confidence 156777777 3366666 46777777777777776 66666543 36677777666666666 46666666666654
Q ss_pred EecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccch
Q 037953 232 VVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENA 311 (625)
Q Consensus 232 ~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 311 (625)
.+.... .+... .+|+ .|.++++.- .. ++ .+..+++|+.|++++|.++
T Consensus 204 ~N~l~~-----l~~~~------~~L~-~L~l~~n~l-~~----lp-~~~~l~~L~~L~l~~N~l~--------------- 250 (454)
T 1jl5_A 204 NNSLKK-----LPDLP------LSLE-SIVAGNNIL-EE----LP-ELQNLPFLTTIYADNNLLK--------------- 250 (454)
T ss_dssp SSCCSS-----CCCCC------TTCC-EEECCSSCC-SS----CC-CCTTCTTCCEEECCSSCCS---------------
T ss_pred CCcCCc-----CCCCc------Cccc-EEECcCCcC-Cc----cc-ccCCCCCCCEEECCCCcCC---------------
Confidence 443222 11111 2344 455544321 11 11 2556677777777666421
Q ss_pred hhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceeeC
Q 037953 312 AKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVG 391 (625)
Q Consensus 312 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~ 391 (625)
.++. .+++|+.|++++|....+ |.+ +++|+.|++++|. +..++.+ .++|+.|++++|. +..++
T Consensus 251 ----~l~~---~~~~L~~L~l~~N~l~~l---~~~---~~~L~~L~ls~N~-l~~l~~~--~~~L~~L~l~~N~-l~~i~ 313 (454)
T 1jl5_A 251 ----TLPD---LPPSLEALNVRDNYLTDL---PEL---PQSLTFLDVSENI-FSGLSEL--PPNLYYLNASSNE-IRSLC 313 (454)
T ss_dssp ----SCCS---CCTTCCEEECCSSCCSCC---CCC---CTTCCEEECCSSC-CSEESCC--CTTCCEEECCSSC-CSEEC
T ss_pred ----cccc---cccccCEEECCCCccccc---Ccc---cCcCCEEECcCCc-cCcccCc--CCcCCEEECcCCc-CCccc
Confidence 1111 135677777776666554 543 2667777776643 3333322 2566666666654 33332
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCE
Q 037953 392 DESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKT 471 (625)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 471 (625)
. ..++|+.|+++++ ++..++. .+++|+.|++++| .++.+|. .+++|++
T Consensus 314 ~---------------------~~~~L~~L~Ls~N-~l~~lp~------~~~~L~~L~L~~N-~l~~lp~---~l~~L~~ 361 (454)
T 1jl5_A 314 D---------------------LPPSLEELNVSNN-KLIELPA------LPPRLERLIASFN-HLAEVPE---LPQNLKQ 361 (454)
T ss_dssp C---------------------CCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCSCCCC---CCTTCCE
T ss_pred C---------------------CcCcCCEEECCCC-ccccccc------cCCcCCEEECCCC-ccccccc---hhhhccE
Confidence 1 0135555555543 2222211 2455555555553 4455554 2455555
Q ss_pred EEEecCcc
Q 037953 472 LRINRCRV 479 (625)
Q Consensus 472 L~l~~c~~ 479 (625)
|++++|+.
T Consensus 362 L~L~~N~l 369 (454)
T 1jl5_A 362 LHVEYNPL 369 (454)
T ss_dssp EECCSSCC
T ss_pred EECCCCCC
Confidence 55555543
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=2e-21 Score=198.94 Aligned_cols=286 Identities=17% Similarity=0.188 Sum_probs=158.3
Q ss_pred cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-ccccccccceecC--CCCCCC-chh
Q 037953 96 KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHLRYLKL--NLVGDL-PEK 171 (625)
Q Consensus 96 ~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L~~L~L--~~l~~l-P~~ 171 (625)
++++++++++. ...+| ..+ .++|++|+|+ +|.+..+|. .|+++++|++|+| |.+..+ |..
T Consensus 32 ~l~~l~~~~~~---l~~lp---~~~--~~~l~~L~L~--------~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (330)
T 1xku_A 32 HLRVVQCSDLG---LEKVP---KDL--PPDTALLDLQ--------NNKITEIKDGDFKNLKNLHTLILINNKISKISPGA 95 (330)
T ss_dssp ETTEEECTTSC---CCSCC---CSC--CTTCCEEECC--------SSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT
T ss_pred CCeEEEecCCC---ccccC---ccC--CCCCeEEECC--------CCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH
Confidence 57777777654 33344 222 2567777777 666666654 4777777777777 335555 666
Q ss_pred hcCCCCCceEeecCCCCCCccccccccccccceEEecCccccccccc-CCCccccccCCceEecCCCCcCCCcccChhcc
Q 037953 172 CCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLSEFVVASGGGRYGSEACKLEGL 250 (625)
Q Consensus 172 i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l 250 (625)
++++++|++|++++|. ++.+|..+. ++|++|+++.|.++.++.. ++++++|+.|++..+....
T Consensus 96 ~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~------------- 159 (330)
T 1xku_A 96 FAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS------------- 159 (330)
T ss_dssp TTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-------------
T ss_pred hcCCCCCCEEECCCCc-CCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc-------------
Confidence 7777777777777776 667766654 5777777766666665533 4555555555543222110
Q ss_pred ccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEE
Q 037953 251 RHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESL 330 (625)
Q Consensus 251 ~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 330 (625)
.+..+..+..+++|+.|++++|.++ .++..+ .++|+.|
T Consensus 160 ---------------------~~~~~~~~~~l~~L~~L~l~~n~l~-------------------~l~~~~--~~~L~~L 197 (330)
T 1xku_A 160 ---------------------SGIENGAFQGMKKLSYIRIADTNIT-------------------TIPQGL--PPSLTEL 197 (330)
T ss_dssp ---------------------GGBCTTGGGGCTTCCEEECCSSCCC-------------------SCCSSC--CTTCSEE
T ss_pred ---------------------cCcChhhccCCCCcCEEECCCCccc-------------------cCCccc--cccCCEE
Confidence 0011123445566677777665321 122222 2577777
Q ss_pred EEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCC
Q 037953 331 EIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSS 409 (625)
Q Consensus 331 ~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 409 (625)
++++|...... |..+..+++|+.|++++|......+ .++.+++|+.|++++|. ++.+|..
T Consensus 198 ~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~---------------- 258 (330)
T 1xku_A 198 HLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGG---------------- 258 (330)
T ss_dssp ECTTSCCCEEC--TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTT----------------
T ss_pred ECCCCcCCccC--HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChh----------------
Confidence 77777665542 5666777777777777754322222 36667777777777764 5455443
Q ss_pred CCCCCCCCCCeeeccCcccccccccCCC----CcccCCCccEEEEecCCCCC--cCCcCCCCCCCCCEEEEecC
Q 037953 410 VNNIAFPKLKELEFSGLQEWEDWDFRKE----DITIMPQINSLSIYGCHKLK--SLPDQLLQSSTLKTLRINRC 477 (625)
Q Consensus 410 ~~~~~l~~L~~L~L~~~~~l~~~~~~~~----~~~~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~c 477 (625)
+..+++|++|+++++. ++.++.... .....+.|+.|++++++... ..|..+..+++|+.+++++|
T Consensus 259 --l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 259 --LADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp --TTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred --hccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 4456667777776542 333221110 00123566666666654321 12334445666666666655
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=9.6e-21 Score=211.44 Aligned_cols=141 Identities=20% Similarity=0.161 Sum_probs=117.6
Q ss_pred EEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-cccccccc
Q 037953 79 LVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHL 157 (625)
Q Consensus 79 l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L 157 (625)
-++.++.++|..++ +.+++|+|++|. +....| ..|.++++|++|+|+ +|.+..+|+ +|.++++|
T Consensus 38 c~~~~l~~vP~~lp--~~~~~LdLs~N~--i~~l~~---~~f~~l~~L~~L~Ls--------~N~i~~i~~~~f~~L~~L 102 (635)
T 4g8a_A 38 CMELNFYKIPDNLP--FSTKNLDLSFNP--LRHLGS---YSFFSFPELQVLDLS--------RCEIQTIEDGAYQSLSHL 102 (635)
T ss_dssp CTTSCCSSCCSSSC--TTCCEEECTTSC--CCEECT---TTTTTCTTCCEEECT--------TCCCCEECTTTTTTCTTC
T ss_pred CCCCCcCccCCCCC--cCCCEEEeeCCC--CCCCCH---HHHhCCCCCCEEECC--------CCcCCCcChhHhcCCCCC
Confidence 33345678887654 589999999975 556666 789999999999999 999988864 69999999
Q ss_pred ceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccc--ccccCCCccccccCCce
Q 037953 158 RYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEY--MPKGIEKLTSLRTLSEF 231 (625)
Q Consensus 158 ~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~~~ 231 (625)
++|+| .+ +..+|. .+.++++|++|+|++|. +..+|.. |+++++|++|+++.|.+.. +|..++.+++|++|++.
T Consensus 103 ~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 181 (635)
T 4g8a_A 103 STLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 181 (635)
T ss_dssp CEEECTTCCCCEECGGGGTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence 99999 44 988885 57999999999999998 8888865 8999999999998888875 46678889999999876
Q ss_pred EecC
Q 037953 232 VVAS 235 (625)
Q Consensus 232 ~~~~ 235 (625)
.+..
T Consensus 182 ~N~l 185 (635)
T 4g8a_A 182 SNKI 185 (635)
T ss_dssp SSCC
T ss_pred Cccc
Confidence 6544
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.85 E-value=4.2e-22 Score=202.19 Aligned_cols=243 Identities=17% Similarity=0.175 Sum_probs=175.8
Q ss_pred CcceEEEeecccCCccc--cCchhhHHHhcCCceeEEEeecCCCccccc-cch-hhhhcccccccccceecC--CCCC-C
Q 037953 95 IKLRSLILFYWIPNLDA--MLPVLKGIFDQLTCLRALRIEGTDNWELEE-DQT-NEILNGVEKLIHLRYLKL--NLVG-D 167 (625)
Q Consensus 95 ~~Lr~L~L~~~~~~~~~--~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~-~~l-~~lp~~~~~L~~L~~L~L--~~l~-~ 167 (625)
.++++|++++|. +.+ .+| ..|+++++|++|+++ + |.+ +.+|..|+++++|++|+| |.+. .
T Consensus 50 ~~l~~L~L~~~~--l~~~~~~~---~~l~~l~~L~~L~L~--------~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~ 116 (313)
T 1ogq_A 50 YRVNNLDLSGLN--LPKPYPIP---SSLANLPYLNFLYIG--------GINNLVGPIPPAIAKLTQLHYLYITHTNVSGA 116 (313)
T ss_dssp CCEEEEEEECCC--CSSCEECC---GGGGGCTTCSEEEEE--------EETTEESCCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred ceEEEEECCCCC--ccCCcccC---hhHhCCCCCCeeeCC--------CCCcccccCChhHhcCCCCCEEECcCCeeCCc
Confidence 689999999975 444 678 889999999999999 6 564 478989999999999999 5565 8
Q ss_pred CchhhcCCCCCceEeecCCCCCC-ccccccccccccceEEecCcccc-cccccCCCcc-ccccCCceEecCCCCcCCCcc
Q 037953 168 LPEKCCELLNLQTLELENSSHFK-RFPQGIGKLINLRHLIFTEDLLE-YMPKGIEKLT-SLRTLSEFVVASGGGRYGSEA 244 (625)
Q Consensus 168 lP~~i~~L~~L~~L~L~~~~~l~-~lp~~l~~L~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~~~~~~~~~~~~~~~~ 244 (625)
+|..++++++|++|++++|. +. .+|..++++++|++|+++.|.+. .+|..+++++ +|+.|++..+....
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~------- 188 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG------- 188 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE-------
T ss_pred CCHHHhCCCCCCEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec-------
Confidence 89999999999999999998 65 78989999999999999888876 7888887776 77777654332111
Q ss_pred cChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCC
Q 037953 245 CKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPP 324 (625)
Q Consensus 245 ~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (625)
..+..+..++ |+.|++++|.++ ...+..+..+
T Consensus 189 -----------------------------~~~~~~~~l~-L~~L~Ls~N~l~------------------~~~~~~~~~l 220 (313)
T 1ogq_A 189 -----------------------------KIPPTFANLN-LAFVDLSRNMLE------------------GDASVLFGSD 220 (313)
T ss_dssp -----------------------------ECCGGGGGCC-CSEEECCSSEEE------------------ECCGGGCCTT
T ss_pred -----------------------------cCChHHhCCc-ccEEECcCCccc------------------CcCCHHHhcC
Confidence 0111233333 777777776422 2344566777
Q ss_pred CCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceeeCccCCCCCCCCCC
Q 037953 325 PNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHG 403 (625)
Q Consensus 325 ~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~ 403 (625)
++|+.|++++|..... +..+..+++|++|++++|...+.+| .++.+++|+.|++++|...+.+|.
T Consensus 221 ~~L~~L~L~~N~l~~~---~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~----------- 286 (313)
T 1ogq_A 221 KNTQKIHLAKNSLAFD---LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ----------- 286 (313)
T ss_dssp SCCSEEECCSSEECCB---GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-----------
T ss_pred CCCCEEECCCCceeee---cCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-----------
Confidence 7888888877766544 4446677778888887765544555 367777777777777764445543
Q ss_pred CCCCCCCCCCCCCCCCeeeccCccc
Q 037953 404 APSSSSVNNIAFPKLKELEFSGLQE 428 (625)
Q Consensus 404 ~~~~~~~~~~~l~~L~~L~L~~~~~ 428 (625)
...+++|+.|++++++.
T Consensus 287 --------~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 287 --------GGNLQRFDVSAYANNKC 303 (313)
T ss_dssp --------STTGGGSCGGGTCSSSE
T ss_pred --------CccccccChHHhcCCCC
Confidence 34556666666666543
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=8.1e-23 Score=219.33 Aligned_cols=355 Identities=17% Similarity=0.123 Sum_probs=238.4
Q ss_pred CCceEEEEEEcCCCCcch--hhhccCCcceEEEeecccCCcc--ccCchhhHHHhcCCceeEEEeecCCCccccccchhh
Q 037953 71 PEKLRHLMLVLGYEAPSL--VSIFNAIKLRSLILFYWIPNLD--AMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE 146 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~--~~~~~l~~Lr~L~L~~~~~~~~--~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~ 146 (625)
++++++|+++++.+...+ ..+..+++|++|++++|..... ..++ ..+..+++|++|+|+ +|.+..
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~---~~l~~~~~L~~L~Ls--------~n~l~~ 70 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS---SALRVNPALAELNLR--------SNELGD 70 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHH---HHHHTCTTCCEEECT--------TCCCHH
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHH---HHHHhCCCcCEEeCC--------CCcCCh
Confidence 568999999999885443 3378899999999999862211 1445 778899999999999 887654
Q ss_pred h-hccc-cccc----ccceecC--CCCC-----CCchhhcCCCCCceEeecCCCCCCcc-ccccc-----cccccceEEe
Q 037953 147 I-LNGV-EKLI----HLRYLKL--NLVG-----DLPEKCCELLNLQTLELENSSHFKRF-PQGIG-----KLINLRHLIF 207 (625)
Q Consensus 147 l-p~~~-~~L~----~L~~L~L--~~l~-----~lP~~i~~L~~L~~L~L~~~~~l~~l-p~~l~-----~L~~L~~L~l 207 (625)
. +..+ ..+. +|++|+| |.+. .+|..+.++++|++|++++|. ++.. +..+. ..++|++|++
T Consensus 71 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L 149 (461)
T 1z7x_W 71 VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQL 149 (461)
T ss_dssp HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEEC
Confidence 2 3333 3355 7999999 4465 568889999999999999998 6532 22222 3568999999
Q ss_pred cCccccc-----ccccCCCccccccCCceEecCCCCcCCCcccChhccc-----cccccccceEEeccCCCCChhHHHHh
Q 037953 208 TEDLLEY-----MPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLR-----HLNHLRGSLKVRGLGNVADVDEVKNA 277 (625)
Q Consensus 208 ~~~~l~~-----lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~-----~L~~L~~~L~l~~~~~~~~~~~~~~~ 277 (625)
++|.++. ++..+..+++|++|++..+.... ..+..+. ..++|+ .|.++++.-.......++.
T Consensus 150 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~-------~~~~~l~~~l~~~~~~L~-~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 150 EYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE-------AGVRVLCQGLKDSPCQLE-ALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH-------HHHHHHHHHHHHSCCCCC-EEECTTSCCBTTHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch-------HHHHHHHHHHhcCCCCce-EEEccCCCCcHHHHHHHHH
Confidence 7777764 34556677888888876554322 1122221 234666 7888776432222233556
Q ss_pred ccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhc-CCCCCCCcEEEEeccCCCc-----ccCCchhhcccc
Q 037953 278 HLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEA-LWPPPNLESLEIAGFRGRK-----MMLSTNWMASLN 351 (625)
Q Consensus 278 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~~~~-----~~~~p~~l~~l~ 351 (625)
.+..+++|++|++++|.++. .....+... ...+++|+.|++++|.... + +..+..++
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~--------------~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---~~~l~~~~ 284 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGD--------------VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL---CRVLRAKE 284 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHH--------------HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH---HHHHHHCT
T ss_pred HHHhCCCccEEeccCCcCCh--------------HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH---HHHHhhCC
Confidence 67788999999999885320 011222232 3468899999999997765 4 66777899
Q ss_pred cccEEEEeCCCCCCC-----CCC--CCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeecc
Q 037953 352 MLKKLRLLNCPTCEI-----MPP--LGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFS 424 (625)
Q Consensus 352 ~L~~L~L~~c~~l~~-----l~~--l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 424 (625)
+|++|++++|. +++ +.. ....++|+.|++++|. ++......+... +..+++|++|+++
T Consensus 285 ~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~-------------l~~~~~L~~L~Ls 349 (461)
T 1z7x_W 285 SLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSV-------------LAQNRFLLELQIS 349 (461)
T ss_dssp TCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHH-------------HHHCSSCCEEECC
T ss_pred CcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHH-------------HhhCCCccEEEcc
Confidence 99999999874 321 111 1234799999999987 332211000000 4567899999999
Q ss_pred CcccccccccCC--CCcc-cCCCccEEEEecCCCCC-----cCCcCCCCCCCCCEEEEecCcc
Q 037953 425 GLQEWEDWDFRK--EDIT-IMPQINSLSIYGCHKLK-----SLPDQLLQSSTLKTLRINRCRV 479 (625)
Q Consensus 425 ~~~~l~~~~~~~--~~~~-~l~~L~~L~l~~c~~l~-----~lp~~~~~l~~L~~L~l~~c~~ 479 (625)
++. +....... ..+. ..++|++|++++| .++ .+|..+..+++|++|++++|+.
T Consensus 350 ~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 350 NNR-LEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp SSB-CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred CCc-cccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 873 33321110 0000 2679999999997 565 5777777789999999999964
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=2.9e-21 Score=214.10 Aligned_cols=377 Identities=13% Similarity=0.013 Sum_probs=242.2
Q ss_pred CCCceEEEEEEcCCCC-cchhhhcc-CCc-ceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh-
Q 037953 70 CPEKLRHLMLVLGYEA-PSLVSIFN-AIK-LRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN- 145 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~-~~~~~~~~-l~~-Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~- 145 (625)
..++++.|+++++.+. ..+..+.. +++ |++|++++|.......++ ....++++|++|+|+ +|.+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~---~~~~~~~~L~~L~L~--------~~~~~~ 178 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLL---SIVTHCRKIKTLLME--------ESSFSE 178 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHH---HHHHHCTTCSEEECT--------TCEEEC
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHH---HHHhhCCCCCEEECc--------cccccC
Confidence 3578999999999773 23444544 445 999999998632233344 556799999999999 55432
Q ss_pred ----hhhcccccccccceecC-CC-CC-----CCchhhcCCCCCceEeecCCCCCCccccccccccccceEEec-Cccc-
Q 037953 146 ----EILNGVEKLIHLRYLKL-NL-VG-----DLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFT-EDLL- 212 (625)
Q Consensus 146 ----~lp~~~~~L~~L~~L~L-~~-l~-----~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~-~~~l- 212 (625)
.++..+..+++|++|++ ++ +. .++..+.++++|++|++++|. +..+|..+.++++|++|+++ .+..
T Consensus 179 ~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~ 257 (592)
T 3ogk_B 179 KDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDI 257 (592)
T ss_dssp CCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCT
T ss_pred cchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhccccccccc
Confidence 24445668899999999 44 64 445567789999999999998 88899889999999999995 3322
Q ss_pred --ccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEE
Q 037953 213 --EYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLIL 290 (625)
Q Consensus 213 --~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l 290 (625)
...+..+..+++|+.|.+..+.. ......+..+++|+ .|.++++. +.. ......+..+++|+.|++
T Consensus 258 ~~~~~~~~l~~~~~L~~L~l~~~~~--------~~l~~~~~~~~~L~-~L~Ls~~~-l~~--~~~~~~~~~~~~L~~L~L 325 (592)
T 3ogk_B 258 GMPEKYMNLVFPRKLCRLGLSYMGP--------NEMPILFPFAAQIR-KLDLLYAL-LET--EDHCTLIQKCPNLEVLET 325 (592)
T ss_dssp TCTTSSSCCCCCTTCCEEEETTCCT--------TTGGGGGGGGGGCC-EEEETTCC-CCH--HHHHHHHTTCTTCCEEEE
T ss_pred chHHHHHHhhccccccccCccccch--------hHHHHHHhhcCCCc-EEecCCCc-CCH--HHHHHHHHhCcCCCEEec
Confidence 23334566677777765543221 12223345566677 88888765 222 233345788999999999
Q ss_pred EEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEec----------cCCCcccCCchhhcccccccEEEEeC
Q 037953 291 RFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAG----------FRGRKMMLSTNWMASLNMLKKLRLLN 360 (625)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~----------~~~~~~~~~p~~l~~l~~L~~L~L~~ 360 (625)
+.+- ....+......+++|++|++++ |........+.....+++|++|+++.
T Consensus 326 ~~~~------------------~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 387 (592)
T 3ogk_B 326 RNVI------------------GDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV 387 (592)
T ss_dssp EGGG------------------HHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE
T ss_pred cCcc------------------CHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec
Confidence 9331 2234444445678999999994 44433100023344689999999954
Q ss_pred CCCCCC--CCCCCC-CCCcceeeccc---cccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCccc-ccccc
Q 037953 361 CPTCEI--MPPLGQ-LPSLEILLIKD---MTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQE-WEDWD 433 (625)
Q Consensus 361 c~~l~~--l~~l~~-l~~L~~L~L~~---~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~-l~~~~ 433 (625)
+.++. +..++. +++|+.|++++ |+.++..|.+. ++. .....+++|+.|+++.|.+ +....
T Consensus 388 -~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~-~~~-----------~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 388 -SDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN-GVR-----------SLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp -SCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH-HHH-----------HHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred -CCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH-HHH-----------HHHHhCCCCCEEEEecCCCCccHHH
Confidence 44442 123333 88999999984 44555433210 000 0034588999999987653 22111
Q ss_pred cCCCCcccCCCccEEEEecCCCCCc--CCcCCCCCCCCCEEEEecCcchhhc-ccccccccCCCCceEEecCCC
Q 037953 434 FRKEDITIMPQINSLSIYGCHKLKS--LPDQLLQSSTLKTLRINRCRVLEEH-FKKDRSKISHIPDIQIYERGP 504 (625)
Q Consensus 434 ~~~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~~L~~~-~~~~~~~l~~l~~l~~~~~~~ 504 (625)
.... ...+++|+.|++++|. ++. ++..+..+++|++|++++|+ +++. ....+..+++++.+.+.++..
T Consensus 455 ~~~~-~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 455 LSYI-GQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp HHHH-HHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred HHHH-HHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCcC
Confidence 1100 1147889999999865 543 45555668899999999998 4332 112234567788888877653
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=6.3e-20 Score=189.56 Aligned_cols=262 Identities=15% Similarity=0.114 Sum_probs=193.4
Q ss_pred EEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hccccccc
Q 037953 77 LMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVEKLI 155 (625)
Q Consensus 77 L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~L~ 155 (625)
.+.+++.+..+|..+. ++|++|++++|. +....+ ..|.++++|++|+++ +|.+..+ |..|++++
T Consensus 36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~--i~~~~~---~~~~~l~~L~~L~L~--------~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNR--ITYISN---SDLQRCVNLQALVLT--------SNGINTIEEDSFSSLG 100 (353)
T ss_dssp EECCSTTCSSCCTTCC--TTCCEEECTTSC--CCEECT---TTTTTCTTCCEEECT--------TSCCCEECTTTTTTCT
T ss_pred eeCCCCCccccccccc--ccCcEEECCCCc--CcccCH---HHhccCCCCCEEECC--------CCccCccCHhhcCCCC
Confidence 6667788888887664 589999999975 444444 578999999999999 8887776 45699999
Q ss_pred ccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCcccc--ccccccccceEEecCc-cccccc-ccCCCccccccC
Q 037953 156 HLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQ--GIGKLINLRHLIFTED-LLEYMP-KGIEKLTSLRTL 228 (625)
Q Consensus 156 ~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~--~l~~L~~L~~L~l~~~-~l~~lp-~~i~~L~~L~~L 228 (625)
+|++|++ .+ +..+|.. ++++++|++|++++|. ++.+|. .+.++++|++|+++.| .++.++ ..++++++|++|
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 9999999 44 8888876 8899999999999998 888887 5889999999999555 577764 468889999999
Q ss_pred CceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccc
Q 037953 229 SEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISN 308 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 308 (625)
++..+.... .....+.++++|+ .|.+.+..- ... ....+..+++|+.|++++|.+++..
T Consensus 180 ~l~~n~l~~-------~~~~~l~~l~~L~-~L~l~~n~l-~~~---~~~~~~~~~~L~~L~L~~n~l~~~~--------- 238 (353)
T 2z80_A 180 EIDASDLQS-------YEPKSLKSIQNVS-HLILHMKQH-ILL---LEIFVDVTSSVECLELRDTDLDTFH--------- 238 (353)
T ss_dssp EEEETTCCE-------ECTTTTTTCSEEE-EEEEECSCS-TTH---HHHHHHHTTTEEEEEEESCBCTTCC---------
T ss_pred ECCCCCcCc-------cCHHHHhccccCC-eecCCCCcc-ccc---hhhhhhhcccccEEECCCCcccccc---------
Confidence 887765443 2233455556666 777776432 222 2223445789999999988643110
Q ss_pred cchhhHHHHhhcCCCCCCCcEEEEeccCCCc-----ccCCchhhcccccccEEEEeCCCCCCCCCC--CCCCCCcceeec
Q 037953 309 ENAAKHEAICEALWPPPNLESLEIAGFRGRK-----MMLSTNWMASLNMLKKLRLLNCPTCEIMPP--LGQLPSLEILLI 381 (625)
Q Consensus 309 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-----~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L 381 (625)
............++.+++.++.... + |.++..+++|+.|++++| .++.+|. ++.+++|++|++
T Consensus 239 ------~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l---~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 239 ------FSELSTGETNSLIKKFTFRNVKITDESLFQV---MKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp ------CC------CCCCCCEEEEESCBCCHHHHHHH---HHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred ------ccccccccccchhhccccccccccCcchhhh---HHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEe
Confidence 0001122345678888888765443 4 778889999999999996 4557774 588999999999
Q ss_pred cccc
Q 037953 382 KDMT 385 (625)
Q Consensus 382 ~~~~ 385 (625)
++|+
T Consensus 309 ~~N~ 312 (353)
T 2z80_A 309 HTNP 312 (353)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 9987
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.81 E-value=1e-20 Score=209.72 Aligned_cols=397 Identities=14% Similarity=0.076 Sum_probs=250.5
Q ss_pred CCCceEEEEEEcCCC----Ccc------------hhhhccCCcceEEEeecccCCccccCchhhHHHhc-CC-ceeEEEe
Q 037953 70 CPEKLRHLMLVLGYE----APS------------LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQ-LT-CLRALRI 131 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~----~~~------------~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~-l~-~Lr~L~L 131 (625)
..+++++|++.++.. ..+ +.....+++|++|++++|. +....+ ..+.. ++ +|++|+|
T Consensus 71 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--i~~~~~---~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 71 RFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI--VSDLDL---DRLAKARADDLETLKL 145 (592)
T ss_dssp HCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB--CCHHHH---HHHHHHHGGGCCEEEE
T ss_pred hCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE--ecHHHH---HHHHHhccccCcEEEC
Confidence 466799999987432 111 2222378999999999974 333333 45555 44 4999999
Q ss_pred ecCCCccccccchhhhhcccccccccceecC--CCCC-C----CchhhcCCCCCceEeecCCCCCC-----ccccccccc
Q 037953 132 EGTDNWELEEDQTNEILNGVEKLIHLRYLKL--NLVG-D----LPEKCCELLNLQTLELENSSHFK-----RFPQGIGKL 199 (625)
Q Consensus 132 s~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L--~~l~-~----lP~~i~~L~~L~~L~L~~~~~l~-----~lp~~l~~L 199 (625)
++|. +.....++....++++|++|+| |.+. . ++....++++|++|++++|. +. .++..+.++
T Consensus 146 ~~~~-----~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 146 DKCS-----GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNC 219 (592)
T ss_dssp ESCE-----EEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHC
T ss_pred cCCC-----CcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhC
Confidence 9443 1112345545568899999999 4432 2 44556789999999999998 64 455557789
Q ss_pred cccceEEecCcccccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhcc
Q 037953 200 INLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHL 279 (625)
Q Consensus 200 ~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l 279 (625)
++|++|+++.+.+..+|..++.+++|+.|.+....... ........+..+++|+ .+.+.... ....+..+
T Consensus 220 ~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~~~~L~-~L~l~~~~-----~~~l~~~~ 289 (592)
T 3ogk_B 220 RSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDI----GMPEKYMNLVFPRKLC-RLGLSYMG-----PNEMPILF 289 (592)
T ss_dssp TTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCT----TCTTSSSCCCCCTTCC-EEEETTCC-----TTTGGGGG
T ss_pred CCCcEEeccCccHHHHHHHHhhhhHHHhhccccccccc----chHHHHHHhhcccccc-ccCccccc-----hhHHHHHH
Confidence 99999999778888888888888999988875432221 0122334455566666 67665531 12345567
Q ss_pred CCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEe
Q 037953 280 EKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLL 359 (625)
Q Consensus 280 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~ 359 (625)
..+++|++|++++|.++ ...+...+..+++|+.|+++++...... +.....+++|++|+++
T Consensus 290 ~~~~~L~~L~Ls~~~l~-----------------~~~~~~~~~~~~~L~~L~L~~~~~~~~l--~~~~~~~~~L~~L~L~ 350 (592)
T 3ogk_B 290 PFAAQIRKLDLLYALLE-----------------TEDHCTLIQKCPNLEVLETRNVIGDRGL--EVLAQYCKQLKRLRIE 350 (592)
T ss_dssp GGGGGCCEEEETTCCCC-----------------HHHHHHHHTTCTTCCEEEEEGGGHHHHH--HHHHHHCTTCCEEEEE
T ss_pred hhcCCCcEEecCCCcCC-----------------HHHHHHHHHhCcCCCEEeccCccCHHHH--HHHHHhCCCCCEEEee
Confidence 77899999999977421 2334455778999999999854332210 4455688999999999
Q ss_pred C----------CCCCCC--CCC-CCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccC-
Q 037953 360 N----------CPTCEI--MPP-LGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSG- 425 (625)
Q Consensus 360 ~----------c~~l~~--l~~-l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~- 425 (625)
+ |+.++. ++. ...+++|++|+++ |+.++...... + ...+++|+.|+++.
T Consensus 351 ~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~~~~--l--------------~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 351 RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNESLES--I--------------GTYLKNLCDFRLVLL 413 (592)
T ss_dssp CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHHHHH--H--------------HHHCCSCCEEEEEEC
T ss_pred cCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHHHHH--H--------------HhhCCCCcEEEEeec
Confidence 5 666653 222 3458999999994 44343221110 0 23488999999984
Q ss_pred --cccccccccCCC---CcccCCCccEEEEecCCC-CCc--CCcCCCCCCCCCEEEEecCcchhhcccccccccCCCCce
Q 037953 426 --LQEWEDWDFRKE---DITIMPQINSLSIYGCHK-LKS--LPDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDI 497 (625)
Q Consensus 426 --~~~l~~~~~~~~---~~~~l~~L~~L~l~~c~~-l~~--lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l 497 (625)
+..++..+...+ .+..+++|++|++++|.. ++. ++.....+++|++|++++|..-..........+.++..+
T Consensus 414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L 493 (592)
T 3ogk_B 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKL 493 (592)
T ss_dssp SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEE
T ss_pred CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCee
Confidence 445554321100 023589999999988764 322 111122378999999999873221111223456788888
Q ss_pred EEecCCCCccchhhhhccCcccccccc
Q 037953 498 QIYERGPGFFTLMARLISDCLSMMNMN 524 (625)
Q Consensus 498 ~~~~~~~~~~~l~~~~i~~c~~L~~l~ 524 (625)
.+.++...-.. .......|++|+.+.
T Consensus 494 ~l~~n~l~~~~-~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 494 EMRGCCFSERA-IAAAVTKLPSLRYLW 519 (592)
T ss_dssp EEESCCCBHHH-HHHHHHHCSSCCEEE
T ss_pred eccCCCCcHHH-HHHHHHhcCccCeeE
Confidence 88887632111 122234566666543
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.81 E-value=4.3e-19 Score=195.21 Aligned_cols=259 Identities=19% Similarity=0.176 Sum_probs=149.5
Q ss_pred ceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccc
Q 037953 73 KLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVE 152 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~ 152 (625)
+++.|+++++.+..+|..+. ++|++|++++|. ...+| . .+++|++|+|+ +|.+..+|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~---l~~lp---~---~l~~L~~L~Ls--------~N~l~~lp~--- 98 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNN---LTSLP---A---LPPELRTLEVS--------GNQLTSLPV--- 98 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCC---CSCCC---C---CCTTCCEEEEC--------SCCCSCCCC---
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCC---CCCCC---C---cCCCCCEEEcC--------CCcCCcCCC---
Confidence 35666666666666665544 566666666654 23444 2 45666666666 666656654
Q ss_pred cccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCCc
Q 037953 153 KLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSE 230 (625)
Q Consensus 153 ~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~ 230 (625)
.+++|++|++ ++ +..+|. .+.+|++|++++|. ++.+|.. +++|++|++++|.++.+|..+ .+|+
T Consensus 99 ~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~---~~L~---- 164 (622)
T 3g06_A 99 LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQLASLPALP---SELC---- 164 (622)
T ss_dssp CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCCSCCCCCC---TTCC----
T ss_pred CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcCCCcCCcc---CCCC----
Confidence 4566666666 33 666654 45566666666665 5666553 356666666555555554322 2222
Q ss_pred eEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccc
Q 037953 231 FVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNEN 310 (625)
Q Consensus 231 ~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 310 (625)
.|++++|.++
T Consensus 165 --------------------------------------------------------~L~L~~N~l~-------------- 174 (622)
T 3g06_A 165 --------------------------------------------------------KLWAYNNQLT-------------- 174 (622)
T ss_dssp --------------------------------------------------------EEECCSSCCS--------------
T ss_pred --------------------------------------------------------EEECCCCCCC--------------
Confidence 2222222110
Q ss_pred hhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceee
Q 037953 311 AAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERV 390 (625)
Q Consensus 311 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l 390 (625)
.++ ..+++|+.|++++|....+ |.. +++|+.|++++| .+..+|. .+++|+.|++++|. ++.+
T Consensus 175 -----~l~---~~~~~L~~L~Ls~N~l~~l---~~~---~~~L~~L~L~~N-~l~~l~~--~~~~L~~L~Ls~N~-L~~l 236 (622)
T 3g06_A 175 -----SLP---MLPSGLQELSVSDNQLASL---PTL---PSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNR-LTSL 236 (622)
T ss_dssp -----CCC---CCCTTCCEEECCSSCCSCC---CCC---CTTCCEEECCSS-CCSSCCC--CCTTCCEEECCSSC-CSCC
T ss_pred -----CCc---ccCCCCcEEECCCCCCCCC---CCc---cchhhEEECcCC-cccccCC--CCCCCCEEEccCCc-cCcC
Confidence 000 1234555555555554444 432 356666666664 3444543 24667777777654 4444
Q ss_pred CccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCC
Q 037953 391 GDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLK 470 (625)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 470 (625)
| ..+++|+.|+++++ .+..++. .+++|+.|++++| .++.+|..+.++++|+
T Consensus 237 p---------------------~~l~~L~~L~Ls~N-~L~~lp~------~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~ 287 (622)
T 3g06_A 237 P---------------------VLPSELKELMVSGN-RLTSLPM------LPSGLLSLSVYRN-QLTRLPESLIHLSSET 287 (622)
T ss_dssp C---------------------CCCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCCSCCGGGGGSCTTC
T ss_pred C---------------------CCCCcCcEEECCCC-CCCcCCc------ccccCcEEeCCCC-CCCcCCHHHhhccccC
Confidence 3 23466777777765 3444432 3688999999985 6778998888899999
Q ss_pred EEEEecCcchhhcc
Q 037953 471 TLRINRCRVLEEHF 484 (625)
Q Consensus 471 ~L~l~~c~~L~~~~ 484 (625)
.|++++|+.-...+
T Consensus 288 ~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 288 TVNLEGNPLSERTL 301 (622)
T ss_dssp EEECCSCCCCHHHH
T ss_pred EEEecCCCCCCcCH
Confidence 99999998655444
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.80 E-value=5.4e-20 Score=190.07 Aligned_cols=256 Identities=17% Similarity=0.148 Sum_probs=194.9
Q ss_pred CCCceEEEEEEcCCCCcchh-hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLV-SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.++++++|++++|.+..++. .+.++++|++|++++|. +....| ..|+++++|++|+++ +|.+..+|
T Consensus 50 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~---~~~~~l~~L~~L~Ls--------~n~l~~~~ 116 (353)
T 2z80_A 50 LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG--INTIEE---DSFSSLGSLEHLDLS--------YNYLSNLS 116 (353)
T ss_dssp CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--CCEECT---TTTTTCTTCCEEECC--------SSCCSSCC
T ss_pred ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc--cCccCH---hhcCCCCCCCEEECC--------CCcCCcCC
Confidence 45689999999999988876 78999999999999975 455666 789999999999999 99988887
Q ss_pred cc-cccccccceecC-CC-CCCCch--hhcCCCCCceEeecCCCCCCccc-cccccccccceEEecCcccccc-cccCCC
Q 037953 149 NG-VEKLIHLRYLKL-NL-VGDLPE--KCCELLNLQTLELENSSHFKRFP-QGIGKLINLRHLIFTEDLLEYM-PKGIEK 221 (625)
Q Consensus 149 ~~-~~~L~~L~~L~L-~~-l~~lP~--~i~~L~~L~~L~L~~~~~l~~lp-~~l~~L~~L~~L~l~~~~l~~l-p~~i~~ 221 (625)
.. ++++++|++|++ .+ +..+|. .+.++++|++|++++|..++.++ ..++++++|++|+++.|.+..+ |..+++
T Consensus 117 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 196 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196 (353)
T ss_dssp HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc
Confidence 66 899999999999 44 889987 68999999999999996577775 5689999999999977777766 677999
Q ss_pred ccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccC
Q 037953 222 LTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKR 301 (625)
Q Consensus 222 L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 301 (625)
+++|++|++..+.... .+ ...+..+++|+ .|.+++..- ................++.++++.+.++
T Consensus 197 l~~L~~L~l~~n~l~~-----~~--~~~~~~~~~L~-~L~L~~n~l-~~~~~~~l~~~~~~~~l~~l~L~~~~l~----- 262 (353)
T 2z80_A 197 IQNVSHLILHMKQHIL-----LL--EIFVDVTSSVE-CLELRDTDL-DTFHFSELSTGETNSLIKKFTFRNVKIT----- 262 (353)
T ss_dssp CSEEEEEEEECSCSTT-----HH--HHHHHHTTTEE-EEEEESCBC-TTCCCC------CCCCCCEEEEESCBCC-----
T ss_pred cccCCeecCCCCcccc-----ch--hhhhhhccccc-EEECCCCcc-ccccccccccccccchhhcccccccccc-----
Confidence 9999999877655432 11 11123345555 677766432 1111011112344667888998877532
Q ss_pred CcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhh-cccccccEEEEeCCCCC
Q 037953 302 WPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWM-ASLNMLKKLRLLNCPTC 364 (625)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l-~~l~~L~~L~L~~c~~l 364 (625)
......++..+..+++|+.|++++|....+ |.++ ..+++|++|++++|+..
T Consensus 263 ---------~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i---~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 263 ---------DESLFQVMKLLNQISGLLELEFSRNQLKSV---PDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp ---------HHHHHHHHHHHHTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEECCSSCBC
T ss_pred ---------CcchhhhHHHHhcccCCCEEECCCCCCCcc---CHHHHhcCCCCCEEEeeCCCcc
Confidence 012346777888899999999999998877 7775 79999999999997533
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=3e-19 Score=180.65 Aligned_cols=239 Identities=19% Similarity=0.094 Sum_probs=170.0
Q ss_pred EEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh---hcccc
Q 037953 76 HLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI---LNGVE 152 (625)
Q Consensus 76 ~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l---p~~~~ 152 (625)
.+...++.+..+|..+. ++|++|++++|. +....+ ..|+++++|++|+|+ +|.+..+ |..+.
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~--l~~i~~---~~~~~l~~L~~L~L~--------~n~l~~~~~~~~~~~ 75 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNK--LQSLPH---GVFDKLTQLTKLSLS--------SNGLSFKGCCSQSDF 75 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSC--CCCCCT---TTTTTCTTCSEEECC--------SSCCCEEEEEEHHHH
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCc--cCccCH---hHhhccccCCEEECC--------CCccCcccCcccccc
Confidence 56666777778877553 689999999865 334444 567889999999999 7776544 55677
Q ss_pred cccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCcccc--ccccccccceEEecCccccccc-ccCCCcccccc
Q 037953 153 KLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQ--GIGKLINLRHLIFTEDLLEYMP-KGIEKLTSLRT 227 (625)
Q Consensus 153 ~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~--~l~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~ 227 (625)
.+++|++|++ .+ +..+|..+.++++|++|++++|. +..+|. .+.++++|++|+++.|.+..++ ..++.+++|++
T Consensus 76 ~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp SCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred cccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 7888888888 44 77888888888888888888887 777764 5788888888888777665543 34566666666
Q ss_pred CCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccccc
Q 037953 228 LSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAIS 307 (625)
Q Consensus 228 L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 307 (625)
|++..+.... ...+..+..+++|+.|++++|.++
T Consensus 155 L~l~~n~l~~-----------------------------------~~~~~~~~~l~~L~~L~Ls~n~l~----------- 188 (306)
T 2z66_A 155 LKMAGNSFQE-----------------------------------NFLPDIFTELRNLTFLDLSQCQLE----------- 188 (306)
T ss_dssp EECTTCEEGG-----------------------------------GEECSCCTTCTTCCEEECTTSCCC-----------
T ss_pred EECCCCcccc-----------------------------------ccchhHHhhCcCCCEEECCCCCcC-----------
Confidence 6543221110 012224556677888888777432
Q ss_pred ccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCC-Ccceeeccccc
Q 037953 308 NENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLP-SLEILLIKDMT 385 (625)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~-~L~~L~L~~~~ 385 (625)
...+..+..+++|+.|++++|...... +..+..+++|+.|++++|...+..+ .+..++ +|+.|++++|+
T Consensus 189 -------~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 189 -------QLSPTAFNSLSSLQVLNMSHNNFFSLD--TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp -------EECTTTTTTCTTCCEEECTTSCCSBCC--SGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred -------CcCHHHhcCCCCCCEEECCCCccCccC--hhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 222456777889999999998877752 4467789999999999976555444 477774 99999999977
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.77 E-value=3.3e-19 Score=190.60 Aligned_cols=238 Identities=19% Similarity=0.188 Sum_probs=179.3
Q ss_pred ceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-ccc
Q 037953 73 KLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGV 151 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~ 151 (625)
..+.+...+..+..+|..+. +++++|++++|. +....| ..|.++++|++|+|+ +|.+..++ ..|
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~--i~~~~~---~~~~~l~~L~~L~Ls--------~n~i~~~~~~~~ 119 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENN--IQMIQA---DTFRHLHHLEVLQLG--------RNSIRQIEVGAF 119 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSC--CCEECT---TTTTTCTTCCEEECC--------SSCCCEECTTTT
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCc--CceECH---HHcCCCCCCCEEECC--------CCccCCcChhhc
Confidence 34567777777888887654 789999999965 555666 789999999999999 88877764 678
Q ss_pred ccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCcccc-ccccccccceEEe-cCccccccccc-CCCcccc
Q 037953 152 EKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIF-TEDLLEYMPKG-IEKLTSL 225 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l-~~~~l~~lp~~-i~~L~~L 225 (625)
.++++|++|+| .+ +..+|.. +.++++|++|+|++|. +..+|. .+.++++|++|++ .++.++.+|.. +..+++|
T Consensus 120 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 198 (452)
T 3zyi_A 120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198 (452)
T ss_dssp TTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred cCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence 99999999999 44 8888765 7889999999999998 888876 4889999999999 55777777754 6677777
Q ss_pred ccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccc
Q 037953 226 RTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEA 305 (625)
Q Consensus 226 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 305 (625)
+.|++..+.... +. .+..+++|+.|++++|.++
T Consensus 199 ~~L~L~~n~l~~---------~~-----------------------------~~~~l~~L~~L~Ls~N~l~--------- 231 (452)
T 3zyi_A 199 KYLNLGMCNIKD---------MP-----------------------------NLTPLVGLEELEMSGNHFP--------- 231 (452)
T ss_dssp CEEECTTSCCSS---------CC-----------------------------CCTTCTTCCEEECTTSCCS---------
T ss_pred CEEECCCCcccc---------cc-----------------------------cccccccccEEECcCCcCc---------
Confidence 777654332211 01 1344566777777766422
Q ss_pred ccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC--CCCCCCcceeeccc
Q 037953 306 ISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP--LGQLPSLEILLIKD 383 (625)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~ 383 (625)
...+..+..+++|+.|++++|...... |..+..+++|+.|+|++| .+..++. +..+++|+.|+|++
T Consensus 232 ---------~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 232 ---------EIRPGSFHGLSSLKKLWVMNSQVSLIE--RNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp ---------EECGGGGTTCTTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCS
T ss_pred ---------ccCcccccCccCCCEEEeCCCcCceEC--HHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccC
Confidence 223456777888999999888877653 667888899999999986 4556653 67899999999998
Q ss_pred cc
Q 037953 384 MT 385 (625)
Q Consensus 384 ~~ 385 (625)
|+
T Consensus 300 Np 301 (452)
T 3zyi_A 300 NP 301 (452)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.77 E-value=3.2e-19 Score=189.99 Aligned_cols=238 Identities=19% Similarity=0.215 Sum_probs=177.8
Q ss_pred ceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-ccc
Q 037953 73 KLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGV 151 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~ 151 (625)
..+.+...+..+..+|..+. ++++.|+|++|. +....+ ..|.++++|++|+|+ +|.+..++ ..|
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~--i~~~~~---~~~~~l~~L~~L~Ls--------~n~i~~i~~~~~ 108 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQ--IQIIKV---NSFKHLRHLEILQLS--------RNHIRTIEIGAF 108 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCC--CCEECT---TTTSSCSSCCEEECC--------SSCCCEECGGGG
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCc--CCeeCH---HHhhCCCCCCEEECC--------CCcCCccChhhc
Confidence 34567777777888887664 789999999965 455556 778999999999999 88877765 568
Q ss_pred ccccccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCcccc-ccccccccceEEe-cCcccccccc-cCCCcccc
Q 037953 152 EKLIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIF-TEDLLEYMPK-GIEKLTSL 225 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l-~~~~l~~lp~-~i~~L~~L 225 (625)
.++++|++|+| ++ +..+|. .+..+++|++|+|++|. +..+|. .+.++++|++|++ .++.+..+|. .+.++++|
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 187 (440)
T 3zyj_A 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187 (440)
T ss_dssp TTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC
T ss_pred cCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc
Confidence 89999999999 44 888876 58899999999999998 887776 4888999999999 5577777765 36677777
Q ss_pred ccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccc
Q 037953 226 RTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEA 305 (625)
Q Consensus 226 ~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 305 (625)
+.|++..+.... +. .+..+++|+.|++++|.++
T Consensus 188 ~~L~L~~n~l~~---------~~-----------------------------~~~~l~~L~~L~Ls~N~l~--------- 220 (440)
T 3zyj_A 188 RYLNLAMCNLRE---------IP-----------------------------NLTPLIKLDELDLSGNHLS--------- 220 (440)
T ss_dssp CEEECTTSCCSS---------CC-----------------------------CCTTCSSCCEEECTTSCCC---------
T ss_pred CeecCCCCcCcc---------cc-----------------------------ccCCCcccCEEECCCCccC---------
Confidence 777654332211 11 1344566777777766422
Q ss_pred ccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC--CCCCCCcceeeccc
Q 037953 306 ISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP--LGQLPSLEILLIKD 383 (625)
Q Consensus 306 ~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~ 383 (625)
...+..+..+++|+.|++++|....+. +..+..+++|+.|+|++| .+..++. +..+++|+.|+|++
T Consensus 221 ---------~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 221 ---------AIRPGSFQGLMHLQKLWMIQSQIQVIE--RNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp ---------EECTTTTTTCTTCCEEECTTCCCCEEC--TTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCS
T ss_pred ---------ccChhhhccCccCCEEECCCCceeEEC--hhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCC
Confidence 222456777888999999888877653 667788899999999986 4555553 67899999999998
Q ss_pred cc
Q 037953 384 MT 385 (625)
Q Consensus 384 ~~ 385 (625)
|+
T Consensus 289 Np 290 (440)
T 3zyj_A 289 NP 290 (440)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.77 E-value=3.8e-19 Score=179.82 Aligned_cols=238 Identities=17% Similarity=0.129 Sum_probs=168.1
Q ss_pred eEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc-cccccccceecC-CC-CCCC---chh
Q 037953 98 RSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG-VEKLIHLRYLKL-NL-VGDL---PEK 171 (625)
Q Consensus 98 r~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~-~~~L~~L~~L~L-~~-l~~l---P~~ 171 (625)
+.++++++. ...+| . .-.++|++|+|+ +|.+..+|.. |+++++|++|+| ++ +..+ |..
T Consensus 10 ~~l~c~~~~---l~~ip---~--~~~~~l~~L~L~--------~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 73 (306)
T 2z66_A 10 TEIRCNSKG---LTSVP---T--GIPSSATRLELE--------SNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS 73 (306)
T ss_dssp TEEECCSSC---CSSCC---S--CCCTTCCEEECC--------SSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH
T ss_pred CEEEcCCCC---cccCC---C--CCCCCCCEEECC--------CCccCccCHhHhhccccCCEEECCCCccCcccCcccc
Confidence 456766644 44555 3 223689999999 8888888765 788999999999 44 6554 677
Q ss_pred hcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccc--cCCCccccccCCceEecCCCCcCCCcccChhc
Q 037953 172 CCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPK--GIEKLTSLRTLSEFVVASGGGRYGSEACKLEG 249 (625)
Q Consensus 172 i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~ 249 (625)
+..+++|++|++++|. +..+|..+..+++|++|+++.|.++.++. .+..+++|++|++..+...
T Consensus 74 ~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~------------- 139 (306)
T 2z66_A 74 DFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR------------- 139 (306)
T ss_dssp HHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-------------
T ss_pred cccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC-------------
Confidence 8889999999999998 88888888899999999998888877764 4666666666654322111
Q ss_pred cccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcE
Q 037953 250 LRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLES 329 (625)
Q Consensus 250 l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 329 (625)
...+..+..+++|+.|++++|.+. ....+..+..+++|+.
T Consensus 140 -----------------------~~~~~~~~~l~~L~~L~l~~n~l~-----------------~~~~~~~~~~l~~L~~ 179 (306)
T 2z66_A 140 -----------------------VAFNGIFNGLSSLEVLKMAGNSFQ-----------------ENFLPDIFTELRNLTF 179 (306)
T ss_dssp -----------------------ECSTTTTTTCTTCCEEECTTCEEG-----------------GGEECSCCTTCTTCCE
T ss_pred -----------------------ccchhhcccCcCCCEEECCCCccc-----------------cccchhHHhhCcCCCE
Confidence 111223566778888888877522 1135567788899999
Q ss_pred EEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC--CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCC
Q 037953 330 LEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP--PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSS 407 (625)
Q Consensus 330 L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~ 407 (625)
|++++|...... |.++..+++|+.|++++|. +..++ .+..+++|+.|++++|. +...+...
T Consensus 180 L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~------------- 242 (306)
T 2z66_A 180 LDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQE------------- 242 (306)
T ss_dssp EECTTSCCCEEC--TTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC-CCBCSSSS-------------
T ss_pred EECCCCCcCCcC--HHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC-CcccCHHH-------------
Confidence 999998877653 6778889999999999865 44444 37789999999999886 43332211
Q ss_pred CCCCCCCCC-CCCeeeccCc
Q 037953 408 SSVNNIAFP-KLKELEFSGL 426 (625)
Q Consensus 408 ~~~~~~~l~-~L~~L~L~~~ 426 (625)
+..++ +|+.|+++++
T Consensus 243 ----~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 243 ----LQHFPSSLAFLNLTQN 258 (306)
T ss_dssp ----CCCCCTTCCEEECTTC
T ss_pred ----HHhhhccCCEEEccCC
Confidence 34443 6777777764
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.77 E-value=9.1e-21 Score=210.11 Aligned_cols=380 Identities=14% Similarity=0.048 Sum_probs=179.2
Q ss_pred CceEEEEEEcCCCC-cchhhhc-cCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 72 EKLRHLMLVLGYEA-PSLVSIF-NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 72 ~~lr~L~l~~~~~~-~~~~~~~-~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
+++++|+++++.+. ..+..+. .+++|++|++++|.......++ ..+.++++|++|+|++|... +.....++.
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~---~~~~~~~~L~~L~L~~~~i~---~~~~~~l~~ 178 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLA---AIAATCRNLKELDLRESDVD---DVSGHWLSH 178 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHH---HHHHHCTTCCEEECTTCEEE---CCCGGGGGG
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHH---HHHHhCCCCCEEeCcCCccC---CcchHHHHH
Confidence 45666666665542 2223332 4566666666665311112233 44456666666666622200 000112232
Q ss_pred ccccccccceecC--CC--C--CCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCc-------cccccc
Q 037953 150 GVEKLIHLRYLKL--NL--V--GDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTED-------LLEYMP 216 (625)
Q Consensus 150 ~~~~L~~L~~L~L--~~--l--~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~-------~l~~lp 216 (625)
....+++|++|++ |. + ..++..+.++++|++|++++|..++.+|..+.++++|++|+++.+ .+..++
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~ 258 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHH
Confidence 2335556666666 22 1 112222344566666666666445555555666666666664221 223333
Q ss_pred ccCCCccccccCCceEecCCCCcCCCcccChh-ccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecc
Q 037953 217 KGIEKLTSLRTLSEFVVASGGGRYGSEACKLE-GLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDI 295 (625)
Q Consensus 217 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 295 (625)
..++++++|+.|.. ..... ...+. ....+++|+ .|.+.++. +. .......+..+++|+.|+++++.
T Consensus 259 ~~l~~~~~L~~Ls~--~~~~~------~~~l~~~~~~~~~L~-~L~L~~~~-l~--~~~l~~~~~~~~~L~~L~l~~~~- 325 (594)
T 2p1m_B 259 VALSGCKELRCLSG--FWDAV------PAYLPAVYSVCSRLT-TLNLSYAT-VQ--SYDLVKLLCQCPKLQRLWVLDYI- 325 (594)
T ss_dssp HHHHTCTTCCEEEC--CBTCC------GGGGGGGHHHHTTCC-EEECTTCC-CC--HHHHHHHHTTCTTCCEEEEEGGG-
T ss_pred HHHhcCCCcccccC--Ccccc------hhhHHHHHHhhCCCC-EEEccCCC-CC--HHHHHHHHhcCCCcCEEeCcCcc-
Confidence 34455555555411 11111 11111 122445566 67776654 22 22334446677888888888652
Q ss_pred cccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEecc--------CCCcccCCchhhcccccccEEEEeCCCCCCCC
Q 037953 296 DKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGF--------RGRKMMLSTNWMASLNMLKKLRLLNCPTCEIM 367 (625)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~--------~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l 367 (625)
....+......+++|+.|++.++ ..............+++|+.|.+.. +.++..
T Consensus 326 -----------------~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~ 387 (594)
T 2p1m_B 326 -----------------EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNA 387 (594)
T ss_dssp -----------------HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHH
T ss_pred -----------------CHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHH
Confidence 12223333334678888888442 2111000011122477888885543 444321
Q ss_pred --CCCC-CCCCcceeecc-----ccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCc
Q 037953 368 --PPLG-QLPSLEILLIK-----DMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDI 439 (625)
Q Consensus 368 --~~l~-~l~~L~~L~L~-----~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~ 439 (625)
..+. .+++|+.|+++ +|..++..|.+. ++. .....+++|+.|++++ .+....+..- .
T Consensus 388 ~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~-~~~-----------~l~~~~~~L~~L~L~~--~l~~~~~~~l-~ 452 (594)
T 2p1m_B 388 ALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI-GFG-----------AIVEHCKDLRRLSLSG--LLTDKVFEYI-G 452 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH-HHH-----------HHHHHCTTCCEEECCS--SCCHHHHHHH-H
T ss_pred HHHHHHhhCCCcceeEeecccCCCcccccCCchhh-HHH-----------HHHhhCCCccEEeecC--cccHHHHHHH-H
Confidence 1222 47788888887 455554333110 000 0034567777777755 2222111100 0
Q ss_pred ccCCCccEEEEecCCCCCc--CCcCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCCC
Q 037953 440 TIMPQINSLSIYGCHKLKS--LPDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERGP 504 (625)
Q Consensus 440 ~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~~ 504 (625)
..+++|+.|++++|. ++. ++.....+++|++|++++|+.-..........+++++.+.+.++..
T Consensus 453 ~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 453 TYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 026777777777764 322 1111133677777777777652111111223345566666655543
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.5e-17 Score=182.91 Aligned_cols=256 Identities=18% Similarity=0.155 Sum_probs=174.8
Q ss_pred CceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccc
Q 037953 124 TCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLIN 201 (625)
Q Consensus 124 ~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~ 201 (625)
.++++|+++ +|.+..+|..+. ++|++|++ ++ +..+|. .+++|++|+|++|. ++.+|. .+++
T Consensus 40 ~~l~~L~ls--------~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~ 102 (622)
T 3g06_A 40 NGNAVLNVG--------ESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPG 102 (622)
T ss_dssp HCCCEEECC--------SSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTT
T ss_pred CCCcEEEec--------CCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCC
Confidence 346677777 666666666554 56777777 33 666665 46677777777776 667765 5667
Q ss_pred cceEEecCcccccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCC
Q 037953 202 LRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEK 281 (625)
Q Consensus 202 L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~ 281 (625)
|++|++++|.++.+|. .+++|+.|++..+.... + +. .
T Consensus 103 L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~------------------l------------p~----------~ 139 (622)
T 3g06_A 103 LLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTS------------------L------------PV----------L 139 (622)
T ss_dssp CCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSC------------------C------------CC----------C
T ss_pred CCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCc------------------C------------CC----------C
Confidence 7777776676666665 34445444433221111 0 00 1
Q ss_pred CCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCC
Q 037953 282 KKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNC 361 (625)
Q Consensus 282 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c 361 (625)
+++|++|++++|.++ .++ ..+++|+.|++++|....+ | ..+++|+.|++++|
T Consensus 140 l~~L~~L~Ls~N~l~-------------------~l~---~~~~~L~~L~L~~N~l~~l---~---~~~~~L~~L~Ls~N 191 (622)
T 3g06_A 140 PPGLQELSVSDNQLA-------------------SLP---ALPSELCKLWAYNNQLTSL---P---MLPSGLQELSVSDN 191 (622)
T ss_dssp CTTCCEEECCSSCCS-------------------CCC---CCCTTCCEEECCSSCCSCC---C---CCCTTCCEEECCSS
T ss_pred CCCCCEEECcCCcCC-------------------CcC---CccCCCCEEECCCCCCCCC---c---ccCCCCcEEECCCC
Confidence 245666666665421 111 1246899999999998887 7 45799999999995
Q ss_pred CCCCCCCCCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCccc
Q 037953 362 PTCEIMPPLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITI 441 (625)
Q Consensus 362 ~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~ 441 (625)
. +..+|. .+++|+.|++++|. ++.+|. .+++|+.|+++++ .+..++ . .
T Consensus 192 ~-l~~l~~--~~~~L~~L~L~~N~-l~~l~~---------------------~~~~L~~L~Ls~N-~L~~lp---~---~ 239 (622)
T 3g06_A 192 Q-LASLPT--LPSELYKLWAYNNR-LTSLPA---------------------LPSGLKELIVSGN-RLTSLP---V---L 239 (622)
T ss_dssp C-CSCCCC--CCTTCCEEECCSSC-CSSCCC---------------------CCTTCCEEECCSS-CCSCCC---C---C
T ss_pred C-CCCCCC--ccchhhEEECcCCc-ccccCC---------------------CCCCCCEEEccCC-ccCcCC---C---C
Confidence 4 556664 35899999999875 555542 3588999999987 455554 2 5
Q ss_pred CCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCCCC
Q 037953 442 MPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERGPG 505 (625)
Q Consensus 442 l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~~~ 505 (625)
+++|+.|++++| .++.+|. .+++|++|++++| .++.+| ..+..+.++..+.+.++...
T Consensus 240 l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp-~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 240 PSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLP-ESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCC-GGGGGSCTTCEEECCSCCCC
T ss_pred CCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCC-HHHhhccccCEEEecCCCCC
Confidence 799999999995 7889998 4789999999999 456777 56777888888888776544
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=4.7e-19 Score=177.25 Aligned_cols=141 Identities=19% Similarity=0.199 Sum_probs=89.7
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hccccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVEK 153 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~ 153 (625)
+.++..++.+..+|..+ .++|++|++++|. +....+ ..|.++++|++|+++ +|.+..+ |..|++
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~--i~~~~~---~~~~~~~~L~~L~l~--------~n~l~~~~~~~~~~ 78 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNR--ISHVPA---ASFRACRNLTILWLH--------SNVLARIDAAAFTG 78 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSC--CCEECT---TTTTTCTTCCEEECC--------SSCCCEECTTTTTT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCc--CCccCH---HHcccCCCCCEEECC--------CCccceeCHhhcCC
Confidence 44555556666666543 3567777777754 344444 556777777777777 6666555 556777
Q ss_pred ccccceecC--CC-CCCC-chhhcCCCCCceEeecCCCCCCcc-ccccccccccceEEecCccccccccc-CCCcccccc
Q 037953 154 LIHLRYLKL--NL-VGDL-PEKCCELLNLQTLELENSSHFKRF-PQGIGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRT 227 (625)
Q Consensus 154 L~~L~~L~L--~~-l~~l-P~~i~~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~ 227 (625)
+++|++|++ |. +..+ |..+.++++|++|++++|. +..+ |..+.++++|++|+++.|.++.+|.. ++.+++|+.
T Consensus 79 l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 157 (285)
T 1ozn_A 79 LALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157 (285)
T ss_dssp CTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccE
Confidence 777777777 44 6666 4566777777777777776 5555 34466777777777766666666543 556666666
Q ss_pred CCce
Q 037953 228 LSEF 231 (625)
Q Consensus 228 L~~~ 231 (625)
|++.
T Consensus 158 L~l~ 161 (285)
T 1ozn_A 158 LFLH 161 (285)
T ss_dssp EECC
T ss_pred EECC
Confidence 5544
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=3.2e-20 Score=188.69 Aligned_cols=232 Identities=16% Similarity=0.116 Sum_probs=154.4
Q ss_pred eEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccc
Q 037953 74 LRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVE 152 (625)
Q Consensus 74 lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~ 152 (625)
++...+..+.+...+ ..+..+++|++|++++|. +....| ..|.++++|++|+|+ +|.+..+++ +.
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~---~~~~~l~~L~~L~Ls--------~n~l~~~~~-~~ 77 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP--LSQISA---ADLAPFTKLELLNLS--------SNVLYETLD-LE 77 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSC--CCCCCH---HHHTTCTTCCEEECT--------TSCCEEEEE-ET
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCc--cCcCCH---HHhhCCCcCCEEECC--------CCcCCcchh-hh
Confidence 333344444443333 334556789999999965 556666 788999999999999 888776654 88
Q ss_pred cccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccc-cCCCccccccCC
Q 037953 153 KLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPK-GIEKLTSLRTLS 229 (625)
Q Consensus 153 ~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~ 229 (625)
.+++|++|++ ++ +..+| ..++|++|++++|. +..++.. .+++|++|+++.|.++.++. .++.+++|+.|+
T Consensus 78 ~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 150 (317)
T 3o53_A 78 SLSTLRTLDLNNNYVQELL----VGPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150 (317)
T ss_dssp TCTTCCEEECCSSEEEEEE----ECTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEE
T ss_pred hcCCCCEEECcCCcccccc----CCCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEE
Confidence 8999999999 44 76665 34789999999988 7777644 46789999998888877754 566677777776
Q ss_pred ceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCccccccc
Q 037953 230 EFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNE 309 (625)
Q Consensus 230 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 309 (625)
+..+.... .....+ ...+++|+.|++++|.++
T Consensus 151 Ls~N~l~~-------~~~~~~----------------------------~~~l~~L~~L~L~~N~l~------------- 182 (317)
T 3o53_A 151 LKLNEIDT-------VNFAEL----------------------------AASSDTLEHLNLQYNFIY------------- 182 (317)
T ss_dssp CTTSCCCE-------EEGGGG----------------------------GGGTTTCCEEECTTSCCC-------------
T ss_pred CCCCCCCc-------ccHHHH----------------------------hhccCcCCEEECCCCcCc-------------
Confidence 54332221 000111 123456666666655422
Q ss_pred chhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccc
Q 037953 310 NAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMT 385 (625)
Q Consensus 310 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~ 385 (625)
.+ .....+++|+.|++++|....+ |..+..+++|+.|++++| .++.+| .+..+++|+.|++++|+
T Consensus 183 ------~~-~~~~~l~~L~~L~Ls~N~l~~l---~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 183 ------DV-KGQVVFAKLKTLDLSSNKLAFM---GPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp ------EE-ECCCCCTTCCEEECCSSCCCEE---CGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred ------cc-ccccccccCCEEECCCCcCCcc---hhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCC
Confidence 01 1223467788888887777776 666777788888888875 444555 36777888888888776
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=3.1e-18 Score=182.99 Aligned_cols=237 Identities=22% Similarity=0.219 Sum_probs=172.1
Q ss_pred ceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hcccccccccceecC--CCCCCCc-hhh
Q 037953 97 LRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVEKLIHLRYLKL--NLVGDLP-EKC 172 (625)
Q Consensus 97 Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~L~~L~~L~L--~~l~~lP-~~i 172 (625)
.+.++.++.. ...+| ..+ .++|++|+|+ +|.+..+ |..|+++++|++|+| |.+..++ ..+
T Consensus 56 ~~~v~c~~~~---l~~iP---~~~--~~~l~~L~L~--------~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 119 (452)
T 3zyi_A 56 FSKVVCTRRG---LSEVP---QGI--PSNTRYLNLM--------ENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF 119 (452)
T ss_dssp SCEEECCSSC---CSSCC---SCC--CTTCSEEECC--------SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred CcEEEECCCC---cCccC---CCC--CCCccEEECc--------CCcCceECHHHcCCCCCCCEEECCCCccCCcChhhc
Confidence 4566666643 34455 322 3689999999 8887776 567999999999999 4476665 678
Q ss_pred cCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccccc-cCCCccccccCCceEecCCCCcCCCcccChhcc
Q 037953 173 CELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPK-GIEKLTSLRTLSEFVVASGGGRYGSEACKLEGL 250 (625)
Q Consensus 173 ~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l 250 (625)
.++++|++|+|++|. +..+|.. +..+++|++|++++|.++.+|. .+.++++|+.|++..+....
T Consensus 120 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~------------- 185 (452)
T 3zyi_A 120 NGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE------------- 185 (452)
T ss_dssp TTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC-------------
T ss_pred cCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc-------------
Confidence 899999999999998 8888776 8889999999998888888875 46777777777654322111
Q ss_pred ccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEE
Q 037953 251 RHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESL 330 (625)
Q Consensus 251 ~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L 330 (625)
.+ ....+..+++|+.|++++|.++ .+ ..+..+++|+.|
T Consensus 186 --------~i--------------~~~~~~~l~~L~~L~L~~n~l~-------------------~~-~~~~~l~~L~~L 223 (452)
T 3zyi_A 186 --------YI--------------SEGAFEGLFNLKYLNLGMCNIK-------------------DM-PNLTPLVGLEEL 223 (452)
T ss_dssp --------EE--------------CTTTTTTCTTCCEEECTTSCCS-------------------SC-CCCTTCTTCCEE
T ss_pred --------cc--------------ChhhccCCCCCCEEECCCCccc-------------------cc-ccccccccccEE
Confidence 00 0113566778888888877532 11 246788999999
Q ss_pred EEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceeeCccC-CCCCCCCCCCCCCC
Q 037953 331 EIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTSVERVGDES-LGIANGDHGAPSSS 408 (625)
Q Consensus 331 ~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~-~~~~~~~~~~~~~~ 408 (625)
++++|...... |..+..+++|+.|++++|......+ .+..+++|+.|+|++|. ++.++.+. .....+..+.+++.
T Consensus 224 ~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 224 EMSGNHFPEIR--PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp ECTTSCCSEEC--GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSS
T ss_pred ECcCCcCcccC--cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCC
Confidence 99999887763 7788999999999999965443333 48889999999999975 77777554 33444444444443
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=1.1e-19 Score=184.76 Aligned_cols=268 Identities=12% Similarity=0.100 Sum_probs=174.3
Q ss_pred HHHhcCCceeEEEeecCCCccccccchhhhh-cccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCcccc
Q 037953 118 GIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQ 194 (625)
Q Consensus 118 ~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~ 194 (625)
..+..+++|++|+|+ +|.+..++ ..|+.+++|++|+| ++ +..++. +..+++|++|++++|. ++.+|
T Consensus 28 ~~~~~~~~L~~L~L~--------~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~- 96 (317)
T 3o53_A 28 SLRQSAWNVKELDLS--------GNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL- 96 (317)
T ss_dssp HHHTTGGGCSEEECT--------TSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE-
T ss_pred HHhccCCCCCEEECc--------CCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc-
Confidence 556667778888888 77766553 56777777888877 33 655554 7777777788777776 66555
Q ss_pred ccccccccceEEecCcccccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHH
Q 037953 195 GIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEV 274 (625)
Q Consensus 195 ~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~ 274 (625)
..++|++|+++.|.+..++... +++|++|++..+... ..
T Consensus 97 ---~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~------------------------------------~~ 135 (317)
T 3o53_A 97 ---VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKIT------------------------------------ML 135 (317)
T ss_dssp ---ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCC------------------------------------SG
T ss_pred ---CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCC------------------------------------Cc
Confidence 3377777777777666655322 444554444322211 11
Q ss_pred HHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcC-CCCCCCcEEEEeccCCCcccCCchhhcccccc
Q 037953 275 KNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEAL-WPPPNLESLEIAGFRGRKMMLSTNWMASLNML 353 (625)
Q Consensus 275 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L 353 (625)
.+..+..+++|+.|++++|.++ ...+..+ ..+++|+.|++++|....+ |... .+++|
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N~l~------------------~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~-~l~~L 193 (317)
T 3o53_A 136 RDLDEGCRSRVQYLDLKLNEID------------------TVNFAELAASSDTLEHLNLQYNFIYDV---KGQV-VFAKL 193 (317)
T ss_dssp GGBCTGGGSSEEEEECTTSCCC------------------EEEGGGGGGGTTTCCEEECTTSCCCEE---ECCC-CCTTC
T ss_pred cchhhhccCCCCEEECCCCCCC------------------cccHHHHhhccCcCCEEECCCCcCccc---cccc-ccccC
Confidence 2223455677777777776432 1112222 3578999999999998876 5433 58999
Q ss_pred cEEEEeCCCCCCCCC-CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccc-cc
Q 037953 354 KKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEW-ED 431 (625)
Q Consensus 354 ~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l-~~ 431 (625)
+.|++++|. +..+| .+..+++|+.|++++|. ++.+|.. +..+++|+.|++++++-. ..
T Consensus 194 ~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~------------------~~~l~~L~~L~l~~N~~~~~~ 253 (317)
T 3o53_A 194 KTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVLIEKA------------------LRFSQNLEHFDLRGNGFHCGT 253 (317)
T ss_dssp CEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCEECTT------------------CCCCTTCCEEECTTCCCBHHH
T ss_pred CEEECCCCc-CCcchhhhcccCcccEEECcCCc-ccchhhH------------------hhcCCCCCEEEccCCCccCcC
Confidence 999999964 45554 57889999999999976 7777764 567899999999986532 11
Q ss_pred cccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCCCEEEEecCcchhh
Q 037953 432 WDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTLKTLRINRCRVLEE 482 (625)
Q Consensus 432 ~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~c~~L~~ 482 (625)
++ ..+..+++|+.|++.+|+.++..+......+.+....-..|..+..
T Consensus 254 ~~---~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~~ 301 (317)
T 3o53_A 254 LR---DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301 (317)
T ss_dssp HH---HHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCTT
T ss_pred HH---HHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCCh
Confidence 11 1133689999999998877766544333334444443445655543
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.74 E-value=1.4e-19 Score=183.44 Aligned_cols=239 Identities=19% Similarity=0.187 Sum_probs=140.0
Q ss_pred eEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHh-------cCCceeEEEeecCCCccccccchh-
Q 037953 74 LRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFD-------QLTCLRALRIEGTDNWELEEDQTN- 145 (625)
Q Consensus 74 lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~-------~l~~Lr~L~Ls~c~~~~~~~~~l~- 145 (625)
++.+.+.+|.+ .+|..+... |++|++++|... ...+| ..+. ++++|++|+|+ +|.+.
T Consensus 45 L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~-~~~~~---~~~~~~~~~~~~l~~L~~L~L~--------~n~l~~ 109 (312)
T 1wwl_A 45 LEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVR-AARIP---SRILFGALRVLGISGLQELTLE--------NLEVTG 109 (312)
T ss_dssp CTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEE-EEECB---HHHHHHHHHHHTTSCCCEEEEE--------EEBCBS
T ss_pred ceeEeeccccc-ccHHHHHHH--Hhhccccccccc-CCCcC---HHHHHHHHHhcCcCCccEEEcc--------CCcccc
Confidence 34444444444 445544433 666666664311 11233 3333 46666666666 55544
Q ss_pred hhhccc--ccccccceecC-CC-CCCCchhhcCC-----CCCceEeecCCCCCCccc-cccccccccceEEecCccccc-
Q 037953 146 EILNGV--EKLIHLRYLKL-NL-VGDLPEKCCEL-----LNLQTLELENSSHFKRFP-QGIGKLINLRHLIFTEDLLEY- 214 (625)
Q Consensus 146 ~lp~~~--~~L~~L~~L~L-~~-l~~lP~~i~~L-----~~L~~L~L~~~~~l~~lp-~~l~~L~~L~~L~l~~~~l~~- 214 (625)
.+|..+ +.+++|++|+| ++ +..+|..++.+ ++|++|++++|. +..+| ..++++++|++|++++|.+..
T Consensus 110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 110 TAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred hhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcc
Confidence 445544 55666666666 33 55555555554 566666666665 44444 445666666666665554322
Q ss_pred --ccccC--CCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEE
Q 037953 215 --MPKGI--EKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLIL 290 (625)
Q Consensus 215 --lp~~i--~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l 290 (625)
+|..+ +.+++|+ .|.+++.. +..........+..+++|+.|++
T Consensus 189 ~~~~~~~~~~~l~~L~--------------------------------~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~L 235 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQ--------------------------------VLALRNAG-METPSGVCSALAAARVQLQGLDL 235 (312)
T ss_dssp HHHHHHSCTTSCTTCC--------------------------------EEECTTSC-CCCHHHHHHHHHHTTCCCSEEEC
T ss_pred hHHHHHHHhccCCCCC--------------------------------EEECCCCc-CcchHHHHHHHHhcCCCCCEEEC
Confidence 12222 3344444 44443321 12222323334556789999999
Q ss_pred EEecccccccCCcccccccchhhHHHH-hhcCCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC
Q 037953 291 RFKDIDKAVKRWPEAISNENAAKHEAI-CEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP 369 (625)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~ 369 (625)
++|.++ ... ...+..+++|+.|++++|....+ |.++. ++|++|++++| .++.+|.
T Consensus 236 s~N~l~------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~i---p~~~~--~~L~~L~Ls~N-~l~~~p~ 291 (312)
T 1wwl_A 236 SHNSLR------------------DAAGAPSCDWPSQLNSLNLSFTGLKQV---PKGLP--AKLSVLDLSYN-RLDRNPS 291 (312)
T ss_dssp TTSCCC------------------SSCCCSCCCCCTTCCEEECTTSCCSSC---CSSCC--SEEEEEECCSS-CCCSCCC
T ss_pred CCCcCC------------------cccchhhhhhcCCCCEEECCCCccChh---hhhcc--CCceEEECCCC-CCCCChh
Confidence 988533 111 12345578999999999998877 88776 89999999995 5666688
Q ss_pred CCCCCCcceeeccccc
Q 037953 370 LGQLPSLEILLIKDMT 385 (625)
Q Consensus 370 l~~l~~L~~L~L~~~~ 385 (625)
+..+++|++|++++|+
T Consensus 292 ~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 292 PDELPQVGNLSLKGNP 307 (312)
T ss_dssp TTTSCEEEEEECTTCT
T ss_pred HhhCCCCCEEeccCCC
Confidence 8999999999999976
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.74 E-value=1.2e-18 Score=174.27 Aligned_cols=215 Identities=17% Similarity=0.124 Sum_probs=139.9
Q ss_pred eEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-cccccccccceecC-CC-CCCC-chhhc
Q 037953 98 RSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGVEKLIHLRYLKL-NL-VGDL-PEKCC 173 (625)
Q Consensus 98 r~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~L~~L~~L~L-~~-l~~l-P~~i~ 173 (625)
++++++++. ...+| . .-.++|++|+++ +|.+..+| ..|+++++|++|++ .+ +..+ |..+.
T Consensus 14 ~~~~c~~~~---l~~ip---~--~~~~~l~~L~l~--------~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 77 (285)
T 1ozn_A 14 VTTSCPQQG---LQAVP---V--GIPAASQRIFLH--------GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT 77 (285)
T ss_dssp CEEECCSSC---CSSCC---T--TCCTTCSEEECT--------TSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred eEEEcCcCC---cccCC---c--CCCCCceEEEee--------CCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcC
Confidence 567777654 44555 2 345799999999 88888776 45899999999999 44 6666 67899
Q ss_pred CCCCCceEeecCCCCCCcc-ccccccccccceEEecCccccccc-ccCCCccccccCCceEecCCCCcCCCcccChhccc
Q 037953 174 ELLNLQTLELENSSHFKRF-PQGIGKLINLRHLIFTEDLLEYMP-KGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLR 251 (625)
Q Consensus 174 ~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~ 251 (625)
++++|++|++++|..++.+ |..+.++++|++|+++.|.++.++ ..++++++|++|++..+.... ....
T Consensus 78 ~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~--- 147 (285)
T 1ozn_A 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA-------LPDD--- 147 (285)
T ss_dssp TCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------CCTT---
T ss_pred CccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccc-------cCHh---
Confidence 9999999999999757777 566899999999999888887774 457778888877765443322 0111
Q ss_pred cccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEE
Q 037953 252 HLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLE 331 (625)
Q Consensus 252 ~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~ 331 (625)
.+..+++|+.|++++|.++ ......+..+++|+.|+
T Consensus 148 --------------------------~~~~l~~L~~L~l~~n~l~------------------~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 148 --------------------------TFRDLGNLTHLFLHGNRIS------------------SVPERAFRGLHSLDRLL 183 (285)
T ss_dssp --------------------------TTTTCTTCCEEECCSSCCC------------------EECTTTTTTCTTCCEEE
T ss_pred --------------------------HhccCCCccEEECCCCccc------------------ccCHHHhcCccccCEEE
Confidence 1333445555555544311 00111344556666666
Q ss_pred EeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC--CCCCCCCcceeeccccc
Q 037953 332 IAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP--PLGQLPSLEILLIKDMT 385 (625)
Q Consensus 332 L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~ 385 (625)
+++|...... |.++..+++|+.|++++|. +..++ .+..+++|+.|++++|+
T Consensus 184 l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 184 LHQNRVAHVH--PHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCSSCCCEEC--TTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred CCCCcccccC--HhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence 6666554432 5556666666666666643 33344 25566666666666654
No 67
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.74 E-value=1.7e-18 Score=184.46 Aligned_cols=152 Identities=22% Similarity=0.195 Sum_probs=130.1
Q ss_pred CCCCceEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh
Q 037953 69 TCPEKLRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI 147 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l 147 (625)
..+.+++.|++++|.+..++ ..+.++++|++|+|++|. +....+ ..|.++++|++|+|+ +|.+..+
T Consensus 61 ~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i~~i~~---~~~~~l~~L~~L~L~--------~n~l~~~ 127 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH--IRTIEI---GAFNGLANLNTLELF--------DNRLTTI 127 (440)
T ss_dssp CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC--CCEECG---GGGTTCSSCCEEECC--------SSCCSSC
T ss_pred CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc--CCccCh---hhccCCccCCEEECC--------CCcCCee
Confidence 34678999999999997775 688999999999999975 555666 789999999999999 9998888
Q ss_pred hc-ccccccccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccccccCCCc
Q 037953 148 LN-GVEKLIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPKGIEKL 222 (625)
Q Consensus 148 p~-~~~~L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~~i~~L 222 (625)
|. .|..+++|++|+| ++ +..+|. .+.++++|++|++++|..++.+|.. +.++++|++|+++.|.++.+| .+..+
T Consensus 128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l 206 (440)
T 3zyj_A 128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPL 206 (440)
T ss_dssp CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTC
T ss_pred CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCC
Confidence 75 5999999999999 44 888875 6889999999999998778888774 899999999999999999997 47778
Q ss_pred cccccCCceEec
Q 037953 223 TSLRTLSEFVVA 234 (625)
Q Consensus 223 ~~L~~L~~~~~~ 234 (625)
++|+.|++..+.
T Consensus 207 ~~L~~L~Ls~N~ 218 (440)
T 3zyj_A 207 IKLDELDLSGNH 218 (440)
T ss_dssp SSCCEEECTTSC
T ss_pred cccCEEECCCCc
Confidence 888888765543
No 68
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.73 E-value=2.2e-20 Score=200.33 Aligned_cols=353 Identities=15% Similarity=0.090 Sum_probs=227.7
Q ss_pred CCceEEEEEEcCCCC-----cchhhhccCCcceEEEeecccCCcccc-CchhhHHHhcCC----ceeEEEeecCCCcccc
Q 037953 71 PEKLRHLMLVLGYEA-----PSLVSIFNAIKLRSLILFYWIPNLDAM-LPVLKGIFDQLT----CLRALRIEGTDNWELE 140 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~-----~~~~~~~~l~~Lr~L~L~~~~~~~~~~-lp~~~~~~~~l~----~Lr~L~Ls~c~~~~~~ 140 (625)
.+++++|++++|.+. .++..+..+++|++|++++|. +... +. ..+..++ +|++|+|+
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~--l~~~~~~---~l~~~l~~~~~~L~~L~L~-------- 93 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE--LGDVGVH---CVLQGLQTPSCKIQKLSLQ-------- 93 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC--CHHHHHH---HHHHTTCSTTCCCCEEECT--------
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc--CChHHHH---HHHHHHhhCCCceeEEEcc--------
Confidence 457999999999985 557778889999999999975 3332 22 3445566 79999999
Q ss_pred ccchh-----hhhcccccccccceecC-CC-CCCC-chhh-----cCCCCCceEeecCCCCCCc-----ccccccccccc
Q 037953 141 EDQTN-----EILNGVEKLIHLRYLKL-NL-VGDL-PEKC-----CELLNLQTLELENSSHFKR-----FPQGIGKLINL 202 (625)
Q Consensus 141 ~~~l~-----~lp~~~~~L~~L~~L~L-~~-l~~l-P~~i-----~~L~~L~~L~L~~~~~l~~-----lp~~l~~L~~L 202 (625)
+|.+. .+|..+..+++|++|++ .+ +... +..+ ...++|++|++++|. ++. ++..+..+++|
T Consensus 94 ~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L 172 (461)
T 1z7x_W 94 NCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDF 172 (461)
T ss_dssp TSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTC
T ss_pred CCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCC
Confidence 66644 67888999999999999 44 5432 2222 236789999999998 764 45667888999
Q ss_pred ceEEecCccccccc-ccCC-----CccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCCh--hHH
Q 037953 203 RHLIFTEDLLEYMP-KGIE-----KLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADV--DEV 274 (625)
Q Consensus 203 ~~L~l~~~~l~~lp-~~i~-----~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~--~~~ 274 (625)
++|++++|.++..+ ..+. ..++|++|++..+...... .......+..+++|+ .|.++++. +... ...
T Consensus 173 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~---~~~l~~~l~~~~~L~-~L~Ls~n~-l~~~~~~~l 247 (461)
T 1z7x_W 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN---CRDLCGIVASKASLR-ELALGSNK-LGDVGMAEL 247 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTH---HHHHHHHHHHCTTCC-EEECCSSB-CHHHHHHHH
T ss_pred CEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHH---HHHHHHHHHhCCCcc-EEeccCCc-CChHHHHHH
Confidence 99999877765432 1121 2457888877655433200 001133355667777 78887642 1111 011
Q ss_pred HHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhc-----c
Q 037953 275 KNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMA-----S 349 (625)
Q Consensus 275 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~-----~ 349 (625)
.......+++|++|++++|.++ . .....++..+..+++|+.|++++|...... +..+. .
T Consensus 248 ~~~~~~~~~~L~~L~L~~n~l~-------~-------~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~--~~~l~~~l~~~ 311 (461)
T 1z7x_W 248 CPGLLHPSSRLRTLWIWECGIT-------A-------KGCGDLCRVLRAKESLKELSLAGNELGDEG--ARLLCETLLEP 311 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCC-------H-------HHHHHHHHHHHHCTTCCEEECTTCCCHHHH--HHHHHHHHTST
T ss_pred HHHHhcCCCCceEEECcCCCCC-------H-------HHHHHHHHHHhhCCCcceEECCCCCCchHH--HHHHHHHhccC
Confidence 1233446899999999988532 0 012336666777899999999998764320 22222 2
Q ss_pred cccccEEEEeCCCCCCC----CC-CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeecc
Q 037953 350 LNMLKKLRLLNCPTCEI----MP-PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFS 424 (625)
Q Consensus 350 l~~L~~L~L~~c~~l~~----l~-~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~ 424 (625)
.++|++|++++|..... ++ .+..+++|+.|++++|. ++..+...+... -....++|++|+++
T Consensus 312 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~------------l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 312 GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQG------------LGQPGSVLRVLWLA 378 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHH------------HTSTTCCCCEEECT
T ss_pred CccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHH------------HcCCCCceEEEECC
Confidence 36999999999863322 22 25567999999999985 443321110000 01126799999999
Q ss_pred Cccccc-----ccccCCCCcccCCCccEEEEecCCCCCc---------CCcCCCCCCCCCEEEEecCcc
Q 037953 425 GLQEWE-----DWDFRKEDITIMPQINSLSIYGCHKLKS---------LPDQLLQSSTLKTLRINRCRV 479 (625)
Q Consensus 425 ~~~~l~-----~~~~~~~~~~~l~~L~~L~l~~c~~l~~---------lp~~~~~l~~L~~L~l~~c~~ 479 (625)
+|. +. .++. .+..+++|++|++++|+ ++. +|. ...+|+.|++.++..
T Consensus 379 ~n~-i~~~~~~~l~~---~l~~~~~L~~L~l~~N~-i~~~~~~~l~~~l~~---~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 379 DCD-VSDSSCSSLAA---TLLANHSLRELDLSNNC-LGDAGILQLVESVRQ---PGCLLEQLVLYDIYW 439 (461)
T ss_dssp TSC-CCHHHHHHHHH---HHHHCCCCCEEECCSSS-CCHHHHHHHHHHHTS---TTCCCCEEECTTCCC
T ss_pred CCC-CChhhHHHHHH---HHHhCCCccEEECCCCC-CCHHHHHHHHHHhcc---CCcchhheeeccccc
Confidence 884 33 2221 13368999999999974 443 232 245677777776643
No 69
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.73 E-value=1.2e-19 Score=201.17 Aligned_cols=360 Identities=18% Similarity=0.104 Sum_probs=228.4
Q ss_pred CCceEEEEEEcC-CCCc--chhhhccCCcceEEEeecccCCccccCc-hhhHHHhcCCceeEEEeecCCCccccccchhh
Q 037953 71 PEKLRHLMLVLG-YEAP--SLVSIFNAIKLRSLILFYWIPNLDAMLP-VLKGIFDQLTCLRALRIEGTDNWELEEDQTNE 146 (625)
Q Consensus 71 ~~~lr~L~l~~~-~~~~--~~~~~~~l~~Lr~L~L~~~~~~~~~~lp-~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~ 146 (625)
.+++++|++.++ .+.. ++.....+++|++|++++|. +....+ .+......+++|++|++++|.. .-....
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--i~~~~~~~l~~~~~~~~~L~~L~l~~~~~----~~~~~~ 202 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD--VDDVSGHWLSHFPDTYTSLVSLNISCLAS----EVSFSA 202 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE--EECCCGGGGGGSCTTCCCCCEEECTTCCS----CCCHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc--cCCcchHHHHHHhhcCCcCcEEEecccCC----cCCHHH
Confidence 579999999988 3433 45555689999999999986 222222 0114445788999999994420 011233
Q ss_pred hhcccccccccceecC--CC-CCCCchhhcCCCCCceEeecCCCC------CCccccccccccccceE-EecCccccccc
Q 037953 147 ILNGVEKLIHLRYLKL--NL-VGDLPEKCCELLNLQTLELENSSH------FKRFPQGIGKLINLRHL-IFTEDLLEYMP 216 (625)
Q Consensus 147 lp~~~~~L~~L~~L~L--~~-l~~lP~~i~~L~~L~~L~L~~~~~------l~~lp~~l~~L~~L~~L-~l~~~~l~~lp 216 (625)
++..+.++++|++|++ |. +..+|..+.++++|++|+++.+.. +..++..+.++++|+.| .+.......+|
T Consensus 203 l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~ 282 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLP 282 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGG
T ss_pred HHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHH
Confidence 4444566899999999 54 666888899999999999877642 34566678899999999 44444445566
Q ss_pred ccCCCccccccCCceEecCCCCcCCCcccChh-ccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecc
Q 037953 217 KGIEKLTSLRTLSEFVVASGGGRYGSEACKLE-GLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDI 295 (625)
Q Consensus 217 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 295 (625)
..+..+++|++|++..+.... ..+. -+.++++|+ .|.+.++ +. ..........+++|++|++..+.-
T Consensus 283 ~~~~~~~~L~~L~L~~~~l~~-------~~l~~~~~~~~~L~-~L~l~~~--~~--~~~l~~l~~~~~~L~~L~L~~~~~ 350 (594)
T 2p1m_B 283 AVYSVCSRLTTLNLSYATVQS-------YDLVKLLCQCPKLQ-RLWVLDY--IE--DAGLEVLASTCKDLRELRVFPSEP 350 (594)
T ss_dssp GGHHHHTTCCEEECTTCCCCH-------HHHHHHHTTCTTCC-EEEEEGG--GH--HHHHHHHHHHCTTCCEEEEECSCT
T ss_pred HHHHhhCCCCEEEccCCCCCH-------HHHHHHHhcCCCcC-EEeCcCc--cC--HHHHHHHHHhCCCCCEEEEecCcc
Confidence 555678888888876555222 2222 245667777 8888875 11 233333344688999999964210
Q ss_pred cccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhc-ccccccEEEEe-----CCCCCCCCCC
Q 037953 296 DKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMA-SLNMLKKLRLL-----NCPTCEIMPP 369 (625)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~-~l~~L~~L~L~-----~c~~l~~l~~ 369 (625)
.+ ...+..+ ....+......+++|+.|.+..+...... +..+. .+++|+.|+++ +|+.++..|.
T Consensus 351 ~g--~~~~~~l------~~~~l~~l~~~~~~L~~L~~~~~~l~~~~--~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~ 420 (594)
T 2p1m_B 351 FV--MEPNVAL------TEQGLVSVSMGCPKLESVLYFCRQMTNAA--LITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420 (594)
T ss_dssp TC--SSCSSCC------CHHHHHHHHHHCTTCCEEEEEESCCCHHH--HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT
T ss_pred cc--cccCCCC------CHHHHHHHHHhchhHHHHHHhcCCcCHHH--HHHHHhhCCCcceeEeecccCCCcccccCCch
Confidence 00 0001111 11222222234789999977666544320 23333 68999999999 5667765542
Q ss_pred -------CCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccC
Q 037953 370 -------LGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIM 442 (625)
Q Consensus 370 -------l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l 442 (625)
+..+++|+.|++++ .+....... + ...+++|+.|++++|. +.......- ...+
T Consensus 421 ~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~--l--------------~~~~~~L~~L~L~~~~-i~~~~~~~l-~~~~ 480 (594)
T 2p1m_B 421 DIGFGAIVEHCKDLRRLSLSG--LLTDKVFEY--I--------------GTYAKKMEMLSVAFAG-DSDLGMHHV-LSGC 480 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCS--SCCHHHHHH--H--------------HHHCTTCCEEEEESCC-SSHHHHHHH-HHHC
T ss_pred hhHHHHHHhhCCCccEEeecC--cccHHHHHH--H--------------HHhchhccEeeccCCC-CcHHHHHHH-HhcC
Confidence 45688999999976 232211100 0 1237899999999875 222111100 1258
Q ss_pred CCccEEEEecCCCCCc--CCcCCCCCCCCCEEEEecCcc
Q 037953 443 PQINSLSIYGCHKLKS--LPDQLLQSSTLKTLRINRCRV 479 (625)
Q Consensus 443 ~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~~ 479 (625)
++|++|++++|+. +. ++.....+++|++|++++|+.
T Consensus 481 ~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 481 DSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp TTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred CCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 9999999999875 43 223445589999999999987
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=9.8e-19 Score=177.29 Aligned_cols=69 Identities=16% Similarity=0.064 Sum_probs=38.9
Q ss_pred CCCCCCcEEEEeccCCCcccCCch-hhcccccccEEEEeCCCCCCCC--CCCCCCCCcceeeccccccceeeC
Q 037953 322 WPPPNLESLEIAGFRGRKMMLSTN-WMASLNMLKKLRLLNCPTCEIM--PPLGQLPSLEILLIKDMTSVERVG 391 (625)
Q Consensus 322 ~~~~~L~~L~L~~~~~~~~~~~p~-~l~~l~~L~~L~L~~c~~l~~l--~~l~~l~~L~~L~L~~~~~l~~l~ 391 (625)
..+++|+.|++++|....+...+. .+..+++|+.|++++|...+.. +.+..+++|++|++++|. ++.+|
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip 269 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVP 269 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCC
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhh
Confidence 556677777777666553200022 2236677888888775533333 235556777777777765 33333
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.69 E-value=2.3e-18 Score=185.29 Aligned_cols=129 Identities=17% Similarity=0.154 Sum_probs=86.8
Q ss_pred CCcchhhhccCC----cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccce
Q 037953 84 EAPSLVSIFNAI----KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRY 159 (625)
Q Consensus 84 ~~~~~~~~~~l~----~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~ 159 (625)
...+|..+..+. +|++|++++|. +....| ..|+.+++|++|+|+ +|.+..+++ ++.+++|++
T Consensus 19 ~~~l~~~l~~l~~~~~~L~~L~Ls~n~--l~~~~~---~~~~~l~~L~~L~Ls--------~N~l~~~~~-l~~l~~L~~ 84 (487)
T 3oja_A 19 DSSLKQALASLRQSAWNVKELDLSGNP--LSQISA---ADLAPFTKLELLNLS--------SNVLYETLD-LESLSTLRT 84 (487)
T ss_dssp TTTHHHHHHTTSTTGGGCCEEECCSSC--CCCCCG---GGGTTCTTCCEEECT--------TSCCEEEEE-CTTCTTCCE
T ss_pred hhhhHHHHHHhcccCCCccEEEeeCCc--CCCCCH---HHHhCCCCCCEEEee--------CCCCCCCcc-cccCCCCCE
Confidence 345555554443 78888888854 455556 677888888888888 777665553 778888888
Q ss_pred ecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccc-cccCCCccccccCCceEe
Q 037953 160 LKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYM-PKGIEKLTSLRTLSEFVV 233 (625)
Q Consensus 160 L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~~~~~ 233 (625)
|+| ++ +..+|. .++|++|++++|. +..+|.. .+++|++|++++|.++.+ |..++.+++|+.|++..+
T Consensus 85 L~Ls~N~l~~l~~----~~~L~~L~L~~N~-l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 154 (487)
T 3oja_A 85 LDLNNNYVQELLV----GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN 154 (487)
T ss_dssp EECCSSEEEEEEE----CTTCCEEECCSSC-CCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS
T ss_pred EEecCCcCCCCCC----CCCcCEEECcCCc-CCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC
Confidence 888 44 666653 2778888888887 6666543 467788888877777665 335666666666665443
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=1.1e-16 Score=161.82 Aligned_cols=66 Identities=21% Similarity=0.218 Sum_probs=45.9
Q ss_pred CCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceeeCc
Q 037953 321 LWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGD 392 (625)
Q Consensus 321 l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~ 392 (625)
+..+++|+.|++++|....+ +. +..+++|+.|++++| .+..++.+..+++|+.|++++|+ +...|.
T Consensus 169 l~~l~~L~~L~l~~n~l~~~---~~-l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~-i~~~~~ 234 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDI---SP-LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQT-ITNQPV 234 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCC---GG-GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEE-EECCCE
T ss_pred hcCCCCCCEEECCCCccCcC---hh-hcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCe-eecCCe
Confidence 45566777777777766654 43 667788888888875 45555567788888888888876 555443
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=7.4e-17 Score=173.55 Aligned_cols=217 Identities=14% Similarity=0.106 Sum_probs=165.9
Q ss_pred HHHhcCC----ceeEEEeecCCCccccccchhhh-hcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCC
Q 037953 118 GIFDQLT----CLRALRIEGTDNWELEEDQTNEI-LNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFK 190 (625)
Q Consensus 118 ~~~~~l~----~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~ 190 (625)
..+..+. +|++|+|+ +|.+..+ |..|+.+++|++|+| ++ +..+++ ++.+++|++|+|++|. ++
T Consensus 24 ~~l~~l~~~~~~L~~L~Ls--------~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~ 93 (487)
T 3oja_A 24 QALASLRQSAWNVKELDLS--------GNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQ 93 (487)
T ss_dssp HHHHTTSTTGGGCCEEECC--------SSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EE
T ss_pred HHHHHhcccCCCccEEEee--------CCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CC
Confidence 5555544 89999999 8887776 467999999999999 44 776664 9999999999999998 88
Q ss_pred ccccccccccccceEEecCcccccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCC
Q 037953 191 RFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVAD 270 (625)
Q Consensus 191 ~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~ 270 (625)
.+|. .++|++|++++|.+..+|.. .+++|+.|++..+.... .....+.++++|+ .|.+++. .
T Consensus 94 ~l~~----~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~-------~~~~~~~~l~~L~-~L~Ls~N----~ 155 (487)
T 3oja_A 94 ELLV----GPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITM-------LRDLDEGCRSRVQ-YLDLKLN----E 155 (487)
T ss_dssp EEEE----CTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCS-------GGGBCGGGGSSEE-EEECTTS----C
T ss_pred CCCC----CCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCC-------CCchhhcCCCCCC-EEECCCC----C
Confidence 7764 38999999999999888754 46788888877665544 1122344455555 6777663 3
Q ss_pred hhHHHHhccC-CCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcc
Q 037953 271 VDEVKNAHLE-KKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMAS 349 (625)
Q Consensus 271 ~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~ 349 (625)
+.+..+..+. .+++|+.|++++|.++ .+ .....+++|+.|++++|....+ |..+..
T Consensus 156 l~~~~~~~l~~~l~~L~~L~Ls~N~l~-------------------~~-~~~~~l~~L~~L~Ls~N~l~~~---~~~~~~ 212 (487)
T 3oja_A 156 IDTVNFAELAASSDTLEHLNLQYNFIY-------------------DV-KGQVVFAKLKTLDLSSNKLAFM---GPEFQS 212 (487)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCC-------------------EE-ECCCCCTTCCEEECCSSCCCEE---CGGGGG
T ss_pred CCCcChHHHhhhCCcccEEecCCCccc-------------------cc-cccccCCCCCEEECCCCCCCCC---CHhHcC
Confidence 3333344454 6899999999988643 11 2344689999999999998887 888999
Q ss_pred cccccEEEEeCCCCCCCCC-CCCCCCCcceeecccccc
Q 037953 350 LNMLKKLRLLNCPTCEIMP-PLGQLPSLEILLIKDMTS 386 (625)
Q Consensus 350 l~~L~~L~L~~c~~l~~l~-~l~~l~~L~~L~L~~~~~ 386 (625)
+++|+.|++++|. +..+| .++.+++|+.|++++|+.
T Consensus 213 l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 213 AAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp GTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCB
T ss_pred CCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCC
Confidence 9999999999965 55566 488899999999999873
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.66 E-value=1.1e-16 Score=159.10 Aligned_cols=131 Identities=21% Similarity=0.232 Sum_probs=68.2
Q ss_pred CcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-ccccccccceecC-
Q 037953 85 APSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHLRYLKL- 162 (625)
Q Consensus 85 ~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L~~L~L- 162 (625)
..+|..+. ++|++|++++|. +....+ ..|.++++|++|+++ +|.+..++. .|.++++|++|++
T Consensus 20 ~~ip~~l~--~~l~~L~ls~n~--l~~~~~---~~~~~l~~L~~L~l~--------~n~l~~~~~~~~~~l~~L~~L~L~ 84 (276)
T 2z62_A 20 YKIPDNLP--FSTKNLDLSFNP--LRHLGS---YSFFSFPELQVLDLS--------RCEIQTIEDGAYQSLSHLSTLILT 84 (276)
T ss_dssp SSCCSSSC--TTCCEEECTTCC--CCEECT---TTTTTCTTCSEEECT--------TCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccCCCCC--CCccEEECCCCc--ccccCH---hHhccccCCcEEECC--------CCcCCccCHHHccCCcCCCEEECC
Confidence 34444332 346666666543 233333 345556666666666 555554432 4555666666666
Q ss_pred CC-CCCCc-hhhcCCCCCceEeecCCCCCCcccc-ccccccccceEEecCccccc--ccccCCCccccccCCce
Q 037953 163 NL-VGDLP-EKCCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFTEDLLEY--MPKGIEKLTSLRTLSEF 231 (625)
Q Consensus 163 ~~-l~~lP-~~i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~~~ 231 (625)
.+ +..++ ..+.++++|++|++++|. +..++. .++++++|++|++++|.++. +|..++.+++|++|++.
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 85 GNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp TCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred CCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence 22 44443 345566666666666665 444443 35556666666665555544 34455555555555443
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.66 E-value=1e-15 Score=148.58 Aligned_cols=212 Identities=14% Similarity=0.120 Sum_probs=126.5
Q ss_pred ceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCcccc-ccccccccceEEecCcc-cccccc-cCCCccccccCCceE
Q 037953 158 RYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFTEDL-LEYMPK-GIEKLTSLRTLSEFV 232 (625)
Q Consensus 158 ~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~~~~-l~~lp~-~i~~L~~L~~L~~~~ 232 (625)
+.+++ |. ++.+|. +. .+|++|++++|. ++.+|. .++++++|++|+++.|. ++.+|. .++.+++|++|++..
T Consensus 14 ~~~~v~c~~l~~ip~-~~--~~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 14 EDFRVTCKDIQRIPS-LP--PSTQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp STTEEEECSCSSCCC-CC--TTCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred CcceeEccCccccCC-CC--CcccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence 45555 55 777776 43 378888888888 777776 47788888888887664 766664 344555555554432
Q ss_pred -ecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccch
Q 037953 233 -VASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENA 311 (625)
Q Consensus 233 -~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 311 (625)
+.... + .+..+..+++|+.|++++|
T Consensus 90 ~n~l~~------------------i------------------~~~~f~~l~~L~~L~l~~n------------------ 115 (239)
T 2xwt_C 90 TRNLTY------------------I------------------DPDALKELPLLKFLGIFNT------------------ 115 (239)
T ss_dssp ETTCCE------------------E------------------CTTSEECCTTCCEEEEEEE------------------
T ss_pred CCCeeE------------------c------------------CHHHhCCCCCCCEEeCCCC------------------
Confidence 11000 0 0012334445555555555
Q ss_pred hhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhccccccc---EEEEeCCCCCCCCCC--CCCCCCcc-eeeccccc
Q 037953 312 AKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLK---KLRLLNCPTCEIMPP--LGQLPSLE-ILLIKDMT 385 (625)
Q Consensus 312 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~---~L~L~~c~~l~~l~~--l~~l~~L~-~L~L~~~~ 385 (625)
....+ |. +..+++|+ .|++++|..++.++. +..+++|+ .|++++|.
T Consensus 116 ------------------------~l~~l---p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 116 ------------------------GLKMF---PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp ------------------------CCCSC---CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred ------------------------CCccc---cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 33333 43 44444554 666666545555542 66677777 77777654
Q ss_pred cceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccC-CCccEEEEecCCCCCcCCcCCC
Q 037953 386 SVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIM-PQINSLSIYGCHKLKSLPDQLL 464 (625)
Q Consensus 386 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~ 464 (625)
++.+|... ... ++|+.|+++++..++.++... +..+ ++|+.|++++ +.++.+|..
T Consensus 168 -l~~i~~~~-----------------~~~-~~L~~L~L~~n~~l~~i~~~~--~~~l~~~L~~L~l~~-N~l~~l~~~-- 223 (239)
T 2xwt_C 168 -FTSVQGYA-----------------FNG-TKLDAVYLNKNKYLTVIDKDA--FGGVYSGPSLLDVSQ-TSVTALPSK-- 223 (239)
T ss_dssp -CCEECTTT-----------------TTT-CEEEEEECTTCTTCCEECTTT--TTTCSBCCSEEECTT-CCCCCCCCT--
T ss_pred -CcccCHhh-----------------cCC-CCCCEEEcCCCCCcccCCHHH--hhccccCCcEEECCC-CccccCChh--
Confidence 55665432 122 577777777765455443221 3356 8888888888 467788776
Q ss_pred CCCCCCEEEEecCcc
Q 037953 465 QSSTLKTLRINRCRV 479 (625)
Q Consensus 465 ~l~~L~~L~l~~c~~ 479 (625)
.+++|+.|++.++..
T Consensus 224 ~~~~L~~L~l~~~~~ 238 (239)
T 2xwt_C 224 GLEHLKELIARNTWT 238 (239)
T ss_dssp TCTTCSEEECTTC--
T ss_pred HhccCceeeccCccC
Confidence 578888888888754
No 76
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.65 E-value=5.7e-16 Score=156.45 Aligned_cols=188 Identities=19% Similarity=0.180 Sum_probs=154.7
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
.+++++|++.++.+..++ .+..+++|++|++++|. ...++ . +..+++|++|+++ +|.+..+| .
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~---i~~~~---~-~~~l~~L~~L~L~--------~n~l~~~~-~ 102 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ---ITDLA---P-LKNLTKITELELS--------GNPLKNVS-A 102 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC---CCCCG---G-GTTCCSCCEEECC--------SCCCSCCG-G
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc---CCCCh---h-HccCCCCCEEEcc--------CCcCCCch-h
Confidence 468999999999988876 67899999999999986 44455 5 8999999999999 88888876 6
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccC
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTL 228 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 228 (625)
+..+++|++|++ .+ +..+|. +..+++|++|++++|. +..+|. ++++++|++|+++.|.++.+|. +..+++|+.|
T Consensus 103 ~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 178 (308)
T 1h6u_A 103 IAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTL 178 (308)
T ss_dssp GTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred hcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEE
Confidence 999999999999 44 888875 9999999999999998 888876 9999999999999899998876 8888999998
Q ss_pred CceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecc
Q 037953 229 SEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDI 295 (625)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 295 (625)
++..+.... +..+..+++|+ .|.++++.- ... . .+..+++|+.|++++|.+
T Consensus 179 ~l~~n~l~~---------~~~l~~l~~L~-~L~L~~N~l-~~~---~--~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 179 KADDNKISD---------ISPLASLPNLI-EVHLKNNQI-SDV---S--PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp ECCSSCCCC---------CGGGGGCTTCC-EEECTTSCC-CBC---G--GGTTCTTCCEEEEEEEEE
T ss_pred ECCCCccCc---------ChhhcCCCCCC-EEEccCCcc-Ccc---c--cccCCCCCCEEEccCCee
Confidence 877665443 22256667777 788876432 221 1 378899999999999963
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=3.4e-17 Score=167.72 Aligned_cols=89 Identities=19% Similarity=0.206 Sum_probs=50.7
Q ss_pred hhcCCCCC-CCcEEEEeccC--C--CcccCCchhhcccccccEEEEeCCCCCCC--CCCCCCCCCcceeeccccccceee
Q 037953 318 CEALWPPP-NLESLEIAGFR--G--RKMMLSTNWMASLNMLKKLRLLNCPTCEI--MPPLGQLPSLEILLIKDMTSVERV 390 (625)
Q Consensus 318 ~~~l~~~~-~L~~L~L~~~~--~--~~~~~~p~~l~~l~~L~~L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~~~l~~l 390 (625)
+..+..++ +|++|++++|. . ..+ |..+..+++|+.|++++|..++. ++.++.+++|+.|++++|..+.
T Consensus 187 ~~~~~~l~~~L~~L~l~~~~~~~~~~~l---~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~-- 261 (336)
T 2ast_B 187 QVAVAHVSETITQLNLSGYRKNLQKSDL---STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII-- 261 (336)
T ss_dssp HHHHHHSCTTCCEEECCSCGGGSCHHHH---HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC--
T ss_pred HHHHHhcccCCCEEEeCCCcccCCHHHH---HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC--
Confidence 33344455 66666666653 1 223 55556677777777777664432 3346667777777777775221
Q ss_pred CccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCc
Q 037953 391 GDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGL 426 (625)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~ 426 (625)
+..+.. +..+++|+.|++++|
T Consensus 262 ~~~~~~---------------l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 262 PETLLE---------------LGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGG---------------GGGCTTCCEEECTTS
T ss_pred HHHHHH---------------HhcCCCCCEEeccCc
Confidence 111100 445677777777766
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=2.8e-17 Score=171.82 Aligned_cols=146 Identities=17% Similarity=0.182 Sum_probs=86.8
Q ss_pred CCcchhhhccCCcceEEEeecccCCccccCc-hhhHHHhcCCceeEEEeecCCCcccccc---chhhhhcccccccccce
Q 037953 84 EAPSLVSIFNAIKLRSLILFYWIPNLDAMLP-VLKGIFDQLTCLRALRIEGTDNWELEED---QTNEILNGVEKLIHLRY 159 (625)
Q Consensus 84 ~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp-~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~---~l~~lp~~~~~L~~L~~ 159 (625)
...++..+..+++|++|++++|. +....+ .+...+..+++|++|+|++|..-...+. .+..+...+.++++|++
T Consensus 21 ~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~ 98 (386)
T 2ca6_A 21 EKSVFAVLLEDDSVKEIVLSGNT--IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHT 98 (386)
T ss_dssp HHTTSHHHHHCSCCCEEECTTSE--ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCE
T ss_pred HHHHHHHHhcCCCccEEECCCCC--CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccE
Confidence 35566777788888999988875 222211 0113466788889998884321000000 11222333467888888
Q ss_pred ecC--CCCCC-----CchhhcCCCCCceEeecCCCCCCc-----cccccccc---------cccceEEecCcccc--ccc
Q 037953 160 LKL--NLVGD-----LPEKCCELLNLQTLELENSSHFKR-----FPQGIGKL---------INLRHLIFTEDLLE--YMP 216 (625)
Q Consensus 160 L~L--~~l~~-----lP~~i~~L~~L~~L~L~~~~~l~~-----lp~~l~~L---------~~L~~L~l~~~~l~--~lp 216 (625)
|+| |.+.. +|..+.++++|++|+|++|. ++. ++..+..+ ++|++|++++|.++ .+|
T Consensus 99 L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 177 (386)
T 2ca6_A 99 VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK 177 (386)
T ss_dssp EECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred EECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence 888 33554 67778888888888888887 542 23334444 78888888777664 333
Q ss_pred ---ccCCCccccccCCceE
Q 037953 217 ---KGIEKLTSLRTLSEFV 232 (625)
Q Consensus 217 ---~~i~~L~~L~~L~~~~ 232 (625)
..+..+++|++|++..
T Consensus 178 ~l~~~l~~~~~L~~L~L~~ 196 (386)
T 2ca6_A 178 EWAKTFQSHRLLHTVKMVQ 196 (386)
T ss_dssp HHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHhCCCcCEEECcC
Confidence 2344455555555443
No 79
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=3.9e-16 Score=155.14 Aligned_cols=198 Identities=16% Similarity=0.172 Sum_probs=150.7
Q ss_pred CCCceEEEEEEcCCCCcchh-hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLV-SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.+.++++|++++|.+..++. .+.++++|++|++++|. +....+ ..|.++++|++|+|+ +|.+..++
T Consensus 26 l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~---~~~~~l~~L~~L~L~--------~n~l~~~~ 92 (276)
T 2z62_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIED---GAYQSLSHLSTLILT--------GNPIQSLA 92 (276)
T ss_dssp SCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC--CCEECT---TTTTTCTTCCEEECT--------TCCCCEEC
T ss_pred CCCCccEEECCCCcccccCHhHhccccCCcEEECCCCc--CCccCH---HHccCCcCCCEEECC--------CCccCccC
Confidence 46789999999999987765 78899999999999975 445555 679999999999999 88887775
Q ss_pred -cccccccccceecC-C-CCCCCch-hhcCCCCCceEeecCCCCCCc--cccccccccccceEEecCcccccccc-cCCC
Q 037953 149 -NGVEKLIHLRYLKL-N-LVGDLPE-KCCELLNLQTLELENSSHFKR--FPQGIGKLINLRHLIFTEDLLEYMPK-GIEK 221 (625)
Q Consensus 149 -~~~~~L~~L~~L~L-~-~l~~lP~-~i~~L~~L~~L~L~~~~~l~~--lp~~l~~L~~L~~L~l~~~~l~~lp~-~i~~ 221 (625)
..|.++++|++|++ . .+..++. .++++++|++|++++|. ++. +|..++++++|++|++++|.++.+|. .+..
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 56999999999999 4 4777765 69999999999999998 776 68899999999999999998888764 5777
Q ss_pred ccccccCC----ceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEec
Q 037953 222 LTSLRTLS----EFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKD 294 (625)
Q Consensus 222 L~~L~~L~----~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 294 (625)
+.+|+.|. +..+.... .+.... ...+|+ .|.+++.. +.......+..+++|+.|++++|.
T Consensus 172 l~~L~~l~l~L~ls~n~l~~-----~~~~~~---~~~~L~-~L~L~~n~----l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNF-----IQPGAF---KEIRLK-ELALDTNQ----LKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCE-----ECTTSS---CSCCEE-EEECCSSC----CSCCCTTTTTTCCSCCEEECCSSC
T ss_pred hhhccccceeeecCCCcccc-----cCcccc---CCCccc-EEECCCCc----eeecCHhHhcccccccEEEccCCc
Confidence 77777544 33222221 111111 122455 67776533 222223456789999999999885
No 80
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.62 E-value=3.8e-16 Score=154.71 Aligned_cols=194 Identities=23% Similarity=0.275 Sum_probs=130.9
Q ss_pred ceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc-c
Q 037953 73 KLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG-V 151 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~-~ 151 (625)
+.+.++++++.+..+|..+. +++++|++++|. +....+ ..|.++++|++|+++ +|.+..+|.. |
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~--l~~~~~---~~~~~l~~L~~L~l~--------~n~l~~i~~~~~ 81 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNK--LSSLPS---KAFHRLTKLRLLYLN--------DNKLQTLPAGIF 81 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSC--CSCCCT---TSSSSCTTCCEEECC--------SSCCSCCCTTTT
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCC--CCeeCH---HHhcCCCCCCEEECC--------CCccCeeChhhh
Confidence 45667777777777776553 678888888865 344444 567788888888888 7777777654 5
Q ss_pred ccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccccccc-CCCccccc
Q 037953 152 EKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPKG-IEKLTSLR 226 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~ 226 (625)
.++++|++|++ .+ +..+|.. +.++++|++|++++|. +..+|.. ++.+++|++|+++.|.++.+|.. ++.+++|+
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 160 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLK 160 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccc
Confidence 77888888888 33 7777643 5778888888888887 6666544 67788888888877777777765 67777777
Q ss_pred cCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEec
Q 037953 227 TLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKD 294 (625)
Q Consensus 227 ~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 294 (625)
.|++..+.... .....+.++++|+ .|.+++.. +.......+..+++|+.|++++|.
T Consensus 161 ~L~L~~n~l~~-------~~~~~~~~l~~L~-~L~L~~N~----l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 161 ELRLYNNQLKR-------VPEGAFDKLTELK-TLKLDNNQ----LKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EEECCSSCCSC-------CCTTTTTTCTTCC-EEECCSSC----CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred eeEecCCcCcE-------eChhHhccCCCcC-EEECCCCc----CCcCCHHHhccccCCCEEEecCCC
Confidence 77766554333 1112344455555 66666532 112222346778899999999885
No 81
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.62 E-value=3.6e-15 Score=153.57 Aligned_cols=62 Identities=16% Similarity=0.068 Sum_probs=42.9
Q ss_pred CCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCC--CCCCCCcceeeccccccceeeC
Q 037953 326 NLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPP--LGQLPSLEILLIKDMTSVERVG 391 (625)
Q Consensus 326 ~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~--l~~l~~L~~L~L~~~~~l~~l~ 391 (625)
.++.|++++|....+ |.......+|+.|.+.+++.++.+|. ++.+++|+.|++++|. ++.+|
T Consensus 155 ~l~~L~L~~N~i~~i---~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp 218 (350)
T 4ay9_X 155 ESVILWLNKNGIQEI---HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLP 218 (350)
T ss_dssp SCEEEECCSSCCCEE---CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCC
T ss_pred hhhhhccccccccCC---ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccC
Confidence 466677777766666 66555667778888877777777773 6777777788777764 55554
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=6.8e-16 Score=154.37 Aligned_cols=122 Identities=19% Similarity=0.122 Sum_probs=82.7
Q ss_pred hccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hcccccccccceecC-CC-CCC
Q 037953 91 IFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVEKLIHLRYLKL-NL-VGD 167 (625)
Q Consensus 91 ~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~L~~L~~L~L-~~-l~~ 167 (625)
+.+++++++++++++. ...+| ..+ .+++++|+|+ +|.+..+ |..|..+++|++|+| ++ +..
T Consensus 6 ~~~l~~l~~l~~~~~~---l~~ip---~~~--~~~l~~L~L~--------~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 69 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN---LTALP---PDL--PKDTTILHLS--------ENLLYTFSLATLMPYTRLTQLNLDRAELTK 69 (290)
T ss_dssp EECSTTCCEEECTTSC---CSSCC---SCC--CTTCCEEECT--------TSCCSEEEGGGGTTCTTCCEEECTTSCCCE
T ss_pred ccccCCccEEECCCCC---CCcCC---CCC--CCCCCEEEcC--------CCcCCccCHHHhhcCCCCCEEECCCCccCc
Confidence 4567778888887754 23344 222 2677888888 7776655 455777888888888 43 777
Q ss_pred CchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccc-cCCCccccccCCc
Q 037953 168 LPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPK-GIEKLTSLRTLSE 230 (625)
Q Consensus 168 lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~ 230 (625)
+|.. +.+++|++|++++|. ++.+|..+..+++|++|++++|.++.+|. .++.+++|+.|++
T Consensus 70 ~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L 131 (290)
T 1p9a_G 70 LQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131 (290)
T ss_dssp EECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEEC
T ss_pred ccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEEC
Confidence 7654 777778888888877 77777777777788888887777776663 3555555555544
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=1.2e-15 Score=151.25 Aligned_cols=65 Identities=14% Similarity=0.039 Sum_probs=46.2
Q ss_pred CCCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccccceeeCcc
Q 037953 321 LWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMTSVERVGDE 393 (625)
Q Consensus 321 l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~~l~~l~~~ 393 (625)
+..+++|+.|++++|...... |..+..+++|+.|++++|.. .+.+++|+.|+++.+...+.+|..
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~~------~~~~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVP--DGVFDRLTSLQYIWLHDNPW------DCTCPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCC--TTTTTTCTTCCEEECCSSCB------CCCTTTTHHHHHHHHHTGGGBBCT
T ss_pred hcCCccCCEEECCCCcCCccC--HHHHhCCcCCCEEEccCCCc------cccCcHHHHHHHHHHhCCCcccCc
Confidence 455667777777777666651 44567889999999988743 355778888888887766666654
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=8.9e-16 Score=153.54 Aligned_cols=194 Identities=16% Similarity=0.062 Sum_probs=144.9
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
..+++.+++.++.+..+|..+. +++++|++++|. +....| ..|.++++|++|+|+ +|.+..+|..
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~--l~~~~~---~~~~~l~~L~~L~L~--------~n~l~~~~~~ 73 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENL--LYTFSL---ATLMPYTRLTQLNLD--------RAELTKLQVD 73 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSC--CSEEEG---GGGTTCTTCCEEECT--------TSCCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCc--CCccCH---HHhhcCCCCCEEECC--------CCccCcccCC
Confidence 4567888888888888887664 788999999865 455556 778899999999999 8888877653
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCcccc-ccccccccceEEecCccccccccc-CCCccccc
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFTEDLLEYMPKG-IEKLTSLR 226 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~ 226 (625)
+.+++|++|++ ++ +..+|..+..+++|++|++++|. ++.+|. .+.++++|++|++++|.++.+|.+ +..+++|+
T Consensus 74 -~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 74 -GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp -SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred -CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence 78889999999 44 88898888899999999999998 887774 488899999999988888888766 56788888
Q ss_pred cCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEec
Q 037953 227 TLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKD 294 (625)
Q Consensus 227 ~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 294 (625)
.|++..+.... .+ .+.+..+++|+ .|.+++..- . .++..+....+|+.+++++|.
T Consensus 152 ~L~L~~N~l~~-----l~--~~~~~~l~~L~-~L~L~~N~l-~----~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 152 KLSLANNNLTE-----LP--AGLLNGLENLD-TLLLQENSL-Y----TIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EEECTTSCCSC-----CC--TTTTTTCTTCC-EEECCSSCC-C----CCCTTTTTTCCCSEEECCSCC
T ss_pred EEECCCCcCCc-----cC--HHHhcCcCCCC-EEECCCCcC-C----ccChhhcccccCCeEEeCCCC
Confidence 88776555433 11 12234455555 666655321 1 233456667789999999885
No 85
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=7.8e-16 Score=152.59 Aligned_cols=101 Identities=32% Similarity=0.508 Sum_probs=48.5
Q ss_pred HhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccc-
Q 037953 120 FDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQG- 195 (625)
Q Consensus 120 ~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~- 195 (625)
++.+++|++|+++ +|.+..++ .++++++|++|++ ++ +..+|.. ++++++|++|++++|. +..+|..
T Consensus 59 l~~l~~L~~L~l~--------~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 128 (272)
T 3rfs_A 59 IQYLPNVRYLALG--------GNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGV 128 (272)
T ss_dssp GGGCTTCCEEECT--------TSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTT
T ss_pred cccCCCCcEEECC--------CCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc-CCccCHHH
Confidence 4455555555555 44444433 4555555555555 22 4444332 3455555555555555 4444433
Q ss_pred cccccccceEEecCccccccccc-CCCccccccCCc
Q 037953 196 IGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLSE 230 (625)
Q Consensus 196 l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~ 230 (625)
++++++|++|++++|.++.+|.. ++.+++|+.|++
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred hccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 45555555555544445444433 344444444443
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.60 E-value=7.6e-17 Score=165.13 Aligned_cols=145 Identities=11% Similarity=0.001 Sum_probs=101.5
Q ss_pred CceEEEEEEcCCCCcchhhhccC--CcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhh--h
Q 037953 72 EKLRHLMLVLGYEAPSLVSIFNA--IKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE--I 147 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~~~~~~l--~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~--l 147 (625)
...+++++.++.+. +..+..+ ++++.|++++|. +.+..+ . +.++++|++|+++ +|.+.. +
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~--l~~~~~---~-~~~~~~L~~L~L~--------~~~l~~~~~ 110 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSF--MDQPLA---E-HFSPFRVQHMDLS--------NSVIEVSTL 110 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCE--ECSCCC---S-CCCCBCCCEEECT--------TCEECHHHH
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCcc--ccccch---h-hccCCCCCEEEcc--------CCCcCHHHH
Confidence 34677777776654 4555666 888888888864 344444 3 5678889999998 776542 7
Q ss_pred hcccccccccceecC--CCCC-CCchhhcCCCCCceEeecCCCCCC--ccccccccccccceEEecCc-cccc--ccccC
Q 037953 148 LNGVEKLIHLRYLKL--NLVG-DLPEKCCELLNLQTLELENSSHFK--RFPQGIGKLINLRHLIFTED-LLEY--MPKGI 219 (625)
Q Consensus 148 p~~~~~L~~L~~L~L--~~l~-~lP~~i~~L~~L~~L~L~~~~~l~--~lp~~l~~L~~L~~L~l~~~-~l~~--lp~~i 219 (625)
|..+..+++|++|++ |.+. ..|..++++++|++|++++|..++ .+|..+.++++|++|+++++ .++. +|..+
T Consensus 111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 190 (336)
T 2ast_B 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 190 (336)
T ss_dssp HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHH
Confidence 777888888888888 4443 567778888888888888884466 36766888888888888655 6653 44445
Q ss_pred CCcc-ccccCCceE
Q 037953 220 EKLT-SLRTLSEFV 232 (625)
Q Consensus 220 ~~L~-~L~~L~~~~ 232 (625)
..++ +|++|++..
T Consensus 191 ~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 191 AHVSETITQLNLSG 204 (336)
T ss_dssp HHSCTTCCEEECCS
T ss_pred HhcccCCCEEEeCC
Confidence 5566 666665543
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=1.6e-16 Score=166.01 Aligned_cols=245 Identities=16% Similarity=0.166 Sum_probs=172.1
Q ss_pred cccCchhhHHHhcCCceeEEEeecCCCccccccchhh-----hhcccccccccceecC--CCCC----CCchhh------
Q 037953 110 DAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE-----ILNGVEKLIHLRYLKL--NLVG----DLPEKC------ 172 (625)
Q Consensus 110 ~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~-----lp~~~~~L~~L~~L~L--~~l~----~lP~~i------ 172 (625)
...++ ..+..+++|++|+|+ +|.+.. ++..+.++++|++|+| |.+. .+|..+
T Consensus 21 ~~~l~---~~l~~~~~L~~L~L~--------~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~ 89 (386)
T 2ca6_A 21 EKSVF---AVLLEDDSVKEIVLS--------GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQA 89 (386)
T ss_dssp HHTTS---HHHHHCSCCCEEECT--------TSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHH
T ss_pred HHHHH---HHHhcCCCccEEECC--------CCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHH
Confidence 34455 788999999999999 776543 4556889999999999 4344 446555
Q ss_pred -cCCCCCceEeecCCCCCCc-----cccccccccccceEEecCccccc-----ccccCCCc---------cccccCCceE
Q 037953 173 -CELLNLQTLELENSSHFKR-----FPQGIGKLINLRHLIFTEDLLEY-----MPKGIEKL---------TSLRTLSEFV 232 (625)
Q Consensus 173 -~~L~~L~~L~L~~~~~l~~-----lp~~l~~L~~L~~L~l~~~~l~~-----lp~~i~~L---------~~L~~L~~~~ 232 (625)
.++++|++|+|++|. ++. +|..+.++++|++|++++|.++. ++..+..+ ++|++|++..
T Consensus 90 l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp HTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HhhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 799999999999998 765 78889999999999998887753 23334344 7888888766
Q ss_pred ecCCCCcCCCcccChhccccccccccceEEeccCCCCC--hhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccc
Q 037953 233 VASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVAD--VDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNEN 310 (625)
Q Consensus 233 ~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 310 (625)
+..... ..+.....+..+++|+ .|.+.++.- .. .....+..+..+++|+.|++++|.++
T Consensus 169 n~l~~~---~~~~l~~~l~~~~~L~-~L~L~~n~l-~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~-------------- 229 (386)
T 2ca6_A 169 NRLENG---SMKEWAKTFQSHRLLH-TVKMVQNGI-RPEGIEHLLLEGLAYCQELKVLDLQDNTFT-------------- 229 (386)
T ss_dssp SCCTGG---GHHHHHHHHHHCTTCC-EEECCSSCC-CHHHHHHHHHTTGGGCTTCCEEECCSSCCH--------------
T ss_pred CCCCcH---HHHHHHHHHHhCCCcC-EEECcCCCC-CHhHHHHHHHHHhhcCCCccEEECcCCCCC--------------
Confidence 554320 0111113455666777 788877532 21 11133337888999999999988532
Q ss_pred hhhHHHHhhcCCCCCCCcEEEEeccCCCcc--cCCchhhc--ccccccEEEEeCCCCCC----CCCC-C-CCCCCcceee
Q 037953 311 AAKHEAICEALWPPPNLESLEIAGFRGRKM--MLSTNWMA--SLNMLKKLRLLNCPTCE----IMPP-L-GQLPSLEILL 380 (625)
Q Consensus 311 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~--~~~p~~l~--~l~~L~~L~L~~c~~l~----~l~~-l-~~l~~L~~L~ 380 (625)
......++..+..+++|+.|+|++|..... ..+|.++. .+++|+.|+|++|.... .+|. + .++++|++|+
T Consensus 230 ~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 230 HLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLE 309 (386)
T ss_dssp HHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred cHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEE
Confidence 001255677888899999999999986542 00045553 38999999999976443 2553 4 5689999999
Q ss_pred ccccc
Q 037953 381 IKDMT 385 (625)
Q Consensus 381 L~~~~ 385 (625)
+++|+
T Consensus 310 l~~N~ 314 (386)
T 2ca6_A 310 LNGNR 314 (386)
T ss_dssp CTTSB
T ss_pred ccCCc
Confidence 99987
No 88
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.58 E-value=3.6e-15 Score=147.65 Aligned_cols=117 Identities=25% Similarity=0.350 Sum_probs=63.7
Q ss_pred cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-ccccccccceecC-CC-CCCCchhh
Q 037953 96 KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHLRYLKL-NL-VGDLPEKC 172 (625)
Q Consensus 96 ~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L~~L~L-~~-l~~lP~~i 172 (625)
..++++++++. ...+| ..+ .++|++|+|+ +|.+..+|. .|.++++|++|++ .+ +..+|..+
T Consensus 17 ~~~~l~~~~~~---l~~ip---~~~--~~~l~~L~l~--------~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~ 80 (270)
T 2o6q_A 17 NKNSVDCSSKK---LTAIP---SNI--PADTKKLDLQ--------SNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI 80 (270)
T ss_dssp TTTEEECTTSC---CSSCC---SCC--CTTCSEEECC--------SSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTT
T ss_pred CCCEEEccCCC---CCccC---CCC--CCCCCEEECc--------CCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhh
Confidence 35666666643 22334 222 2456666666 666555543 4666666666666 33 55665443
Q ss_pred -cCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccccccc-CCCccccccCC
Q 037953 173 -CELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLS 229 (625)
Q Consensus 173 -~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~ 229 (625)
.++++|++|++++|. +..+|.. +.++++|++|+++.|.++.+|.. ++.+++|++|+
T Consensus 81 ~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 139 (270)
T 2o6q_A 81 FKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139 (270)
T ss_dssp TSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred hcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEE
Confidence 556666666666666 5555543 45666666666655555554432 33344443333
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.58 E-value=1.2e-15 Score=148.13 Aligned_cols=196 Identities=14% Similarity=0.116 Sum_probs=148.3
Q ss_pred CCCceEEEEEEcCCCCcchh-hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccc-cchhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLV-SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEE-DQTNEI 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~-~~l~~l 147 (625)
.+.+++.|++++|.+..+++ .+.++++|++|++++|. .+....+ ..|.++++|++|+++ + |.+..+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-~l~~i~~---~~f~~l~~L~~L~l~--------~~n~l~~i 96 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV-TLQQLES---HSFYNLSKVTHIEIR--------NTRNLTYI 96 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS-SCCEECT---TTEESCTTCCEEEEE--------EETTCCEE
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC-CcceeCH---hHcCCCcCCcEEECC--------CCCCeeEc
Confidence 56799999999999988876 78899999999999973 1344445 678999999999999 8 788888
Q ss_pred h-cccccccccceecC--CCCCCCchhhcCCCCCc---eEeecCCCCCCccccc-cccccccc-eEEecCcccccccccC
Q 037953 148 L-NGVEKLIHLRYLKL--NLVGDLPEKCCELLNLQ---TLELENSSHFKRFPQG-IGKLINLR-HLIFTEDLLEYMPKGI 219 (625)
Q Consensus 148 p-~~~~~L~~L~~L~L--~~l~~lP~~i~~L~~L~---~L~L~~~~~l~~lp~~-l~~L~~L~-~L~l~~~~l~~lp~~i 219 (625)
| ..|.++++|++|++ |.+..+|. ++.+++|+ +|++++|..++.+|.. +.++++|+ +|+++.|.++.+|...
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~ 175 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA 175 (239)
T ss_dssp CTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT
T ss_pred CHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh
Confidence 6 46899999999999 44888987 88888888 9999999338888875 89999999 9999999999999876
Q ss_pred CCccccccCCceEec-CCCCcCCCcccChhccccc-cccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEe
Q 037953 220 EKLTSLRTLSEFVVA-SGGGRYGSEACKLEGLRHL-NHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFK 293 (625)
Q Consensus 220 ~~L~~L~~L~~~~~~-~~~~~~~~~~~~l~~l~~L-~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 293 (625)
...++|+.|++..+. ... .....+..+ ++|+ .|.+++.. +... + -..+++|+.|+++++
T Consensus 176 ~~~~~L~~L~L~~n~~l~~-------i~~~~~~~l~~~L~-~L~l~~N~-l~~l----~--~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 176 FNGTKLDAVYLNKNKYLTV-------IDKDAFGGVYSGPS-LLDVSQTS-VTAL----P--SKGLEHLKELIARNT 236 (239)
T ss_dssp TTTCEEEEEECTTCTTCCE-------ECTTTTTTCSBCCS-EEECTTCC-CCCC----C--CTTCTTCSEEECTTC
T ss_pred cCCCCCCEEEcCCCCCccc-------CCHHHhhccccCCc-EEECCCCc-cccC----C--hhHhccCceeeccCc
Confidence 555888888876553 222 112234445 5565 67666521 1221 1 115677888877643
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1.5e-14 Score=148.88 Aligned_cols=236 Identities=14% Similarity=0.087 Sum_probs=146.7
Q ss_pred ceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccc-cccccc-CCCccccccCCceE
Q 037953 158 RYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLL-EYMPKG-IEKLTSLRTLSEFV 232 (625)
Q Consensus 158 ~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l-~~lp~~-i~~L~~L~~L~~~~ 232 (625)
++++- .. ++++|..+ .+++++|+|++|. ++.+|.+ |.++++|++|+++.|.+ +.+|.+ +.++++++.+....
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 44455 33 88888776 3688999999988 8888875 78899999999977765 445543 44455444322211
Q ss_pred ecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchh
Q 037953 233 VASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAA 312 (625)
Q Consensus 233 ~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 312 (625)
.. .+ ....+..+..+++|+.|++++|.+.
T Consensus 89 ~N--------------------------------~l---~~l~~~~f~~l~~L~~L~l~~n~l~---------------- 117 (350)
T 4ay9_X 89 AN--------------------------------NL---LYINPEAFQNLPNLQYLLISNTGIK---------------- 117 (350)
T ss_dssp ET--------------------------------TC---CEECTTSBCCCTTCCEEEEEEECCS----------------
T ss_pred CC--------------------------------cc---cccCchhhhhccccccccccccccc----------------
Confidence 10 00 0111234667778888888887532
Q ss_pred hHHHHhhcCCCCCCCcEEEEeccC-CCcccCCchhhccc-ccccEEEEeCCCCCCCCCC-CCCCCCcceeecccccccee
Q 037953 313 KHEAICEALWPPPNLESLEIAGFR-GRKMMLSTNWMASL-NMLKKLRLLNCPTCEIMPP-LGQLPSLEILLIKDMTSVER 389 (625)
Q Consensus 313 ~~~~~~~~l~~~~~L~~L~L~~~~-~~~~~~~p~~l~~l-~~L~~L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~ 389 (625)
...........++..|++.++. ...+. +..+..+ ..++.|++++| .++.++. ....++|+.|.+.+++.++.
T Consensus 118 --~~~~~~~~~~~~l~~l~l~~~~~i~~l~--~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~ 192 (350)
T 4ay9_X 118 --HLPDVHKIHSLQKVLLDIQDNINIHTIE--RNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEE 192 (350)
T ss_dssp --SCCCCTTCCBSSCEEEEEESCTTCCEEC--TTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCC
T ss_pred --cCCchhhcccchhhhhhhcccccccccc--ccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccC
Confidence 0001112233456667776543 33331 2233333 35777888774 4555553 44567788888887777877
Q ss_pred eCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcCCCCCCCC
Q 037953 390 VGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQLLQSSTL 469 (625)
Q Consensus 390 l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 469 (625)
+|.+. +..+++|+.|+++++ +++.++.. .+.+|+.|.+.+|+.++.+|. +..+++|
T Consensus 193 i~~~~-----------------f~~l~~L~~LdLs~N-~l~~lp~~-----~~~~L~~L~~l~~~~l~~lP~-l~~l~~L 248 (350)
T 4ay9_X 193 LPNDV-----------------FHGASGPVILDISRT-RIHSLPSY-----GLENLKKLRARSTYNLKKLPT-LEKLVAL 248 (350)
T ss_dssp CCTTT-----------------TTTEECCSEEECTTS-CCCCCCSS-----SCTTCCEEECTTCTTCCCCCC-TTTCCSC
T ss_pred CCHHH-----------------hccCcccchhhcCCC-CcCccChh-----hhccchHhhhccCCCcCcCCC-chhCcCh
Confidence 77653 456778888888876 45555422 477788888888888888874 5667888
Q ss_pred CEEEEec
Q 037953 470 KTLRINR 476 (625)
Q Consensus 470 ~~L~l~~ 476 (625)
+.+++.+
T Consensus 249 ~~l~l~~ 255 (350)
T 4ay9_X 249 MEASLTY 255 (350)
T ss_dssp CEEECSC
T ss_pred hhCcCCC
Confidence 8888754
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=4.8e-15 Score=149.87 Aligned_cols=224 Identities=14% Similarity=0.064 Sum_probs=146.8
Q ss_pred CCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh-hhhccc--ccccccceecC--CCCCC-
Q 037953 94 AIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN-EILNGV--EKLIHLRYLKL--NLVGD- 167 (625)
Q Consensus 94 l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~-~lp~~~--~~L~~L~~L~L--~~l~~- 167 (625)
...++.+.+.++... ...+..+ ..+..+++|++|+++ +|.+. ..|..+ +.+++|++|+| |.+..
T Consensus 63 ~~~l~~l~l~~~~~~-~~~~~~~-~~~~~~~~L~~L~l~--------~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~ 132 (310)
T 4glp_A 63 ALRVRRLTVGAAQVP-AQLLVGA-LRVLAYSRLKELTLE--------DLKITGTMPPLPLEATGLALSSLRLRNVSWATG 132 (310)
T ss_dssp SCCCCEEEECSCCCB-HHHHHHH-HHHHHHSCCCEEEEE--------SCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST
T ss_pred hcceeEEEEeCCcCC-HHHHHHH-HHhcccCceeEEEee--------CCEeccchhhhhhhccCCCCCEEEeecccccch
Confidence 345777777775421 1111100 012345679999999 77754 456666 88889999999 44543
Q ss_pred Cc----hhhcCCCCCceEeecCCCCCCccc-cccccccccceEEecCccccc---ccc--cCCCccccccCCceEecCCC
Q 037953 168 LP----EKCCELLNLQTLELENSSHFKRFP-QGIGKLINLRHLIFTEDLLEY---MPK--GIEKLTSLRTLSEFVVASGG 237 (625)
Q Consensus 168 lP----~~i~~L~~L~~L~L~~~~~l~~lp-~~l~~L~~L~~L~l~~~~l~~---lp~--~i~~L~~L~~L~~~~~~~~~ 237 (625)
.| ..+..+++|++|++++|. +..+| ..++++++|++|++++|.+.. ++. .++.+++|++|++..+...
T Consensus 133 ~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~- 210 (310)
T 4glp_A 133 RSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME- 210 (310)
T ss_dssp TSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-
T ss_pred hhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-
Confidence 33 345678899999999998 66655 568889999999997776543 322 2356666776665433211
Q ss_pred CcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHH
Q 037953 238 GRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAI 317 (625)
Q Consensus 238 ~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (625)
.........+..+++|++|++++|.++ ...
T Consensus 211 --------------------------------~l~~~~~~l~~~l~~L~~L~Ls~N~l~------------------~~~ 240 (310)
T 4glp_A 211 --------------------------------TPTGVCAALAAAGVQPHSLDLSHNSLR------------------ATV 240 (310)
T ss_dssp --------------------------------CHHHHHHHHHHHTCCCSSEECTTSCCC------------------CCC
T ss_pred --------------------------------chHHHHHHHHhcCCCCCEEECCCCCCC------------------ccc
Confidence 111111122355678888888877532 111
Q ss_pred hhcCCC---CCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccc
Q 037953 318 CEALWP---PPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMT 385 (625)
Q Consensus 318 ~~~l~~---~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~ 385 (625)
+..+.. +++|++|++++|....+ |..+. ++|+.|++++| .++.+|.+..+++|+.|++++|+
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~N~l~~l---p~~~~--~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSFAGLEQV---PKGLP--AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCSSCCCSC---CSCCC--SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSSTT
T ss_pred hhhHHhccCcCcCCEEECCCCCCCch---hhhhc--CCCCEEECCCC-cCCCCchhhhCCCccEEECcCCC
Confidence 233333 37999999999988877 87764 89999999985 56667777889999999999876
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.54 E-value=1.7e-14 Score=135.48 Aligned_cols=146 Identities=18% Similarity=0.172 Sum_probs=123.5
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhh-hhc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE-ILN 149 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~-lp~ 149 (625)
.+++++|++++|.+..+| .+..+++|++|++++|. ...+ ..+..+++|++|+++ +|.+.. .|.
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~---~~~~----~~l~~l~~L~~L~l~--------~n~l~~~~~~ 106 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH---ATNY----NPISGLSNLERLRIM--------GKDVTSDKIP 106 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC---CSCC----GGGTTCTTCCEEEEE--------CTTCBGGGSC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC---CCcc----hhhhcCCCCCEEEeE--------CCccCcccCh
Confidence 468999999999998888 68899999999999984 3333 358899999999999 888764 677
Q ss_pred ccccccccceecC-CC-CC-CCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccc
Q 037953 150 GVEKLIHLRYLKL-NL-VG-DLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLR 226 (625)
Q Consensus 150 ~~~~L~~L~~L~L-~~-l~-~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~ 226 (625)
.++.+++|++|++ ++ +. ..|..++++++|++|++++|..++.+| .+..+++|++|++++|.++.++ .+..+++|+
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~ 184 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLN 184 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCC
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCC
Confidence 8999999999999 44 65 477889999999999999997688887 6999999999999989898887 778888888
Q ss_pred cCCceEec
Q 037953 227 TLSEFVVA 234 (625)
Q Consensus 227 ~L~~~~~~ 234 (625)
+|++..+.
T Consensus 185 ~L~l~~N~ 192 (197)
T 4ezg_A 185 QLYAFSQT 192 (197)
T ss_dssp EEEECBC-
T ss_pred EEEeeCcc
Confidence 88766544
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=2.7e-14 Score=139.70 Aligned_cols=150 Identities=27% Similarity=0.346 Sum_probs=91.1
Q ss_pred CCceEEEEEEcCCCCcch-hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 71 PEKLRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
+.+++.|++++|.+..++ ..+.++++|++|++++|. +....| ..|.++++|++|+|+ +|.+..+|.
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~---~~~~~l~~L~~L~L~--------~n~l~~~~~ 100 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ--LQTLSA---GVFDDLTELGTLGLA--------NNQLASLPL 100 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCCCCT---TTTTTCTTCCEEECT--------TSCCCCCCT
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc--CCccCH---hHhccCCcCCEEECC--------CCcccccCh
Confidence 456666666666664443 356666667777766644 344444 556666667777776 666555543
Q ss_pred -ccccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCcccc-ccccccccceEEecCcccccccc-cCCCcc
Q 037953 150 -GVEKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFTEDLLEYMPK-GIEKLT 223 (625)
Q Consensus 150 -~~~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~~~~l~~lp~-~i~~L~ 223 (625)
.|..+++|++|+| ++ +..+|.. +.++++|++|+|++|. ++.+|. .++++++|++|+++.|.++.+|. .+..++
T Consensus 101 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 179 (251)
T 3m19_A 101 GVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCC
Confidence 3566666777776 33 6666544 4566667777776666 666655 36666667777776666666654 355566
Q ss_pred ccccCCceEec
Q 037953 224 SLRTLSEFVVA 234 (625)
Q Consensus 224 ~L~~L~~~~~~ 234 (625)
+|+.|++..+.
T Consensus 180 ~L~~L~l~~N~ 190 (251)
T 3m19_A 180 KLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEEeeCCc
Confidence 66666554443
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.51 E-value=2.4e-14 Score=140.03 Aligned_cols=147 Identities=25% Similarity=0.254 Sum_probs=121.7
Q ss_pred CceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-cc
Q 037953 72 EKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NG 150 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~ 150 (625)
.+.+++++.++.+..+|..+. +.++.|++++|. +....| ..|.++++|++|+|+ +|.+..++ ..
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~--l~~~~~---~~~~~l~~L~~L~L~--------~n~l~~~~~~~ 78 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTG--LATLSD---ATFRGLTKLTWLNLD--------YNQLQTLSAGV 78 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSC--CCCCCT---TTTTTCTTCCEEECT--------TSCCCCCCTTT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCC--cCccCH---hHhcCcccCCEEECC--------CCcCCccCHhH
Confidence 345678888888888888765 789999999975 455666 779999999999999 88877765 45
Q ss_pred cccccccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccccc-cCCCcccc
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPK-GIEKLTSL 225 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L 225 (625)
|..+++|++|+| ++ +..+|. .+..+++|++|+|++|. ++.+|.. +.++++|++|++++|.++.+|. .++.+++|
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence 899999999999 44 878774 57899999999999998 8888876 6889999999999999998887 47888888
Q ss_pred ccCCceEec
Q 037953 226 RTLSEFVVA 234 (625)
Q Consensus 226 ~~L~~~~~~ 234 (625)
++|++..+.
T Consensus 158 ~~L~L~~N~ 166 (251)
T 3m19_A 158 QTLSLSTNQ 166 (251)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 888765543
No 95
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.50 E-value=6.7e-14 Score=139.96 Aligned_cols=138 Identities=17% Similarity=0.207 Sum_probs=83.5
Q ss_pred CceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhccc
Q 037953 72 EKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGV 151 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~ 151 (625)
.+++.|++.++.+..++ .+..+++|++|++++|. ...++ . +.++++|++|+++ +|.+..+| .+
T Consensus 46 ~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~---l~~~~---~-l~~l~~L~~L~l~--------~n~l~~~~-~l 108 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK---LTDIK---P-LANLKNLGWLFLD--------ENKVKDLS-SL 108 (291)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC---CCCCG---G-GTTCTTCCEEECC--------SSCCCCGG-GG
T ss_pred CcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc---cCCCc---c-cccCCCCCEEECC--------CCcCCCCh-hh
Confidence 45666666666665554 35666667777766654 22333 3 6666667777776 66655554 36
Q ss_pred ccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCC
Q 037953 152 EKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLS 229 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 229 (625)
+.+++|++|++ .+ +..++ .+..+++|++|++++|. ++.+ ..++++++|++|++++|.++.++. +..+++|+.|+
T Consensus 109 ~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~ 184 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLY 184 (291)
T ss_dssp TTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred ccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEE
Confidence 66666666666 33 55553 56666666666666666 6555 356666666666666666665544 55555555554
Q ss_pred c
Q 037953 230 E 230 (625)
Q Consensus 230 ~ 230 (625)
+
T Consensus 185 L 185 (291)
T 1h6t_A 185 L 185 (291)
T ss_dssp C
T ss_pred C
Confidence 4
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=6.7e-14 Score=134.74 Aligned_cols=145 Identities=25% Similarity=0.354 Sum_probs=116.6
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc-ccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG-VEK 153 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~-~~~ 153 (625)
+.++.+++.+..+|..+. ++|++|++++|. +....| ..|.++++|++|+|+ +|.+..+|.. |..
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~--i~~~~~---~~~~~l~~L~~L~L~--------~N~l~~i~~~~~~~ 86 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQ--ITKLEP---GVFDSLINLKELYLG--------SNQLGALPVGVFDS 86 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSC--CCCCCT---TTTTTCTTCCEEECC--------SSCCCCCCTTTTTT
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCc--cCccCH---HHhhCccCCcEEECC--------CCCCCCcChhhccc
Confidence 356677777788887654 889999999965 555667 778899999999999 8888888744 788
Q ss_pred ccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccccccccccceEEecCccccccccc-CCCccccccCC
Q 037953 154 LIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLS 229 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~ 229 (625)
+++|++|+| ++ +..+|.. +..+++|++|+|++|. +..+|..+.++++|++|+++.|.++.+|.. +..+++|+.|+
T Consensus 87 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 87 LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAY 165 (229)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCc-ccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 999999999 44 8888765 6789999999999998 889998899999999999988888888754 67788888777
Q ss_pred ceEecC
Q 037953 230 EFVVAS 235 (625)
Q Consensus 230 ~~~~~~ 235 (625)
+..+..
T Consensus 166 l~~N~~ 171 (229)
T 3e6j_A 166 LFGNPW 171 (229)
T ss_dssp CTTSCB
T ss_pred eeCCCc
Confidence 655443
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.46 E-value=2.7e-14 Score=156.74 Aligned_cols=59 Identities=19% Similarity=0.219 Sum_probs=30.3
Q ss_pred CCCCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCCCCCCCCCcceeeccccc
Q 037953 322 WPPPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMPPLGQLPSLEILLIKDMT 385 (625)
Q Consensus 322 ~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~~l~~l~~L~~L~L~~~~ 385 (625)
..+++|+.|+|++|..... +. +..+++|+.|+|++| .+..++.+..+++|+.|+|++|+
T Consensus 150 ~~l~~L~~L~Ls~N~l~~~---~~-l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 150 SRLTKLDTLSLEDNQISDI---VP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GSCTTCSEEECCSSCCCCC---GG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEE
T ss_pred cccCCCCEEECcCCcCCCc---hh-hccCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCc
Confidence 3444555555555544443 22 455555555555553 33444555555666666665544
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=2.2e-14 Score=148.40 Aligned_cols=251 Identities=11% Similarity=0.035 Sum_probs=129.9
Q ss_pred EEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCc-hhhHHHhcCC-ceeEEEeecCCCccccccchhhh-hccccc
Q 037953 78 MLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLP-VLKGIFDQLT-CLRALRIEGTDNWELEEDQTNEI-LNGVEK 153 (625)
Q Consensus 78 ~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp-~~~~~~~~l~-~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~ 153 (625)
.++.+.+... |..+...++|++|++++|. +....+ .+...+.+++ +|++|+|+ +|.+... +..+..
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls--------~N~l~~~~~~~l~~ 73 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNN--LYSISTVELIQAFANTPASVTSLNLS--------GNSLGFKNSDELVQ 73 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTCCTTCCEEECC--------SSCGGGSCHHHHHH
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCC--CChHHHHHHHHHHHhCCCceeEEECc--------CCCCCHHHHHHHHH
Confidence 3445555433 3333344448888888865 222211 0114466677 78888888 6665543 444555
Q ss_pred c-----cccceecC--CCCCCC-chh----hcCC-CCCceEeecCCCCCCccccc-----ccc-ccccceEEecCccccc
Q 037953 154 L-----IHLRYLKL--NLVGDL-PEK----CCEL-LNLQTLELENSSHFKRFPQG-----IGK-LINLRHLIFTEDLLEY 214 (625)
Q Consensus 154 L-----~~L~~L~L--~~l~~l-P~~----i~~L-~~L~~L~L~~~~~l~~lp~~-----l~~-L~~L~~L~l~~~~l~~ 214 (625)
+ ++|++|+| |.+... +.. +..+ ++|++|++++|. ++..+.. +.. .++|++|++++|.++.
T Consensus 74 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 74 ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGG
T ss_pred HHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCH
Confidence 4 77788888 335433 332 3444 778888888887 6655432 223 2578888886666652
Q ss_pred -----ccccCCCcc-ccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCC-CCCCe
Q 037953 215 -----MPKGIEKLT-SLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKK-KNLVR 287 (625)
Q Consensus 215 -----lp~~i~~L~-~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l-~~L~~ 287 (625)
++..+..+. +|++|++..+.... .....+...+... ++|+.
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~--------------------------------~~~~~l~~~l~~~~~~L~~ 200 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLAS--------------------------------KNCAELAKFLASIPASVTS 200 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGG--------------------------------SCHHHHHHHHHTSCTTCCE
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCch--------------------------------hhHHHHHHHHHhCCCCCCE
Confidence 222222222 44444433221111 1111122233344 36777
Q ss_pred EEEEEecccccccCCcccccccchhhHHHHhhcCCC-CCCCcEEEEeccCCCccc--CCchhhcccccccEEEEeCCCC-
Q 037953 288 LILRFKDIDKAVKRWPEAISNENAAKHEAICEALWP-PPNLESLEIAGFRGRKMM--LSTNWMASLNMLKKLRLLNCPT- 363 (625)
Q Consensus 288 L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~L~~~~~~~~~--~~p~~l~~l~~L~~L~L~~c~~- 363 (625)
|++++|.++. .....++..+.. .++|+.|++++|...... .+...+..+++|+.|++++|..
T Consensus 201 L~Ls~N~i~~--------------~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 201 LDLSANLLGL--------------KSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp EECTTSCGGG--------------SCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred EECCCCCCCh--------------hHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 7776664220 011234444433 347777777777654420 0012234667777777777541
Q ss_pred -CC-----CCC-CCCCCCCcceeeccccc
Q 037953 364 -CE-----IMP-PLGQLPSLEILLIKDMT 385 (625)
Q Consensus 364 -l~-----~l~-~l~~l~~L~~L~L~~~~ 385 (625)
+. .++ .+..+++|+.|++++|.
T Consensus 267 ~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 267 NMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred ccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 11 111 35677888888888766
No 99
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=1e-13 Score=155.95 Aligned_cols=155 Identities=18% Similarity=0.149 Sum_probs=98.5
Q ss_pred CCCceEEEEEEcCCCCcchhhhccCCcceEEEeeccc--CCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWI--PNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~--~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l 147 (625)
...+++++++..+.....+..+.....|+.+.+.... .+....+| +.|..+++|++|+|+ +|.+..+
T Consensus 171 s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~---~~~~~l~~L~~L~Ls--------~n~l~~l 239 (727)
T 4b8c_D 171 STPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPK---DSKYDDQLWHALDLS--------NLQIFNI 239 (727)
T ss_dssp ------------------------------------------------------CCCCCCEEECT--------TSCCSCC
T ss_pred cCCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecCh---hhhccCCCCcEEECC--------CCCCCCC
Confidence 3456899999998887777666555555555544421 11123556 889999999999999 9998899
Q ss_pred hcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCcccc
Q 037953 148 LNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSL 225 (625)
Q Consensus 148 p~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L 225 (625)
|..+.++++|++|+| ++ +..+|..+++|++|++|+|++|. ++.+|..+++|++|++|++++|.++.+|..++++++|
T Consensus 240 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L 318 (727)
T 4b8c_D 240 SANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNL 318 (727)
T ss_dssp CGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTC
T ss_pred ChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCc
Confidence 988999999999999 44 88999999999999999999999 8899999999999999999999999999999999999
Q ss_pred ccCCceEecCC
Q 037953 226 RTLSEFVVASG 236 (625)
Q Consensus 226 ~~L~~~~~~~~ 236 (625)
+.|++..+...
T Consensus 319 ~~L~L~~N~l~ 329 (727)
T 4b8c_D 319 QFLGVEGNPLE 329 (727)
T ss_dssp CCEECTTSCCC
T ss_pred cEEeCCCCccC
Confidence 99988766554
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=6.7e-14 Score=144.75 Aligned_cols=155 Identities=14% Similarity=0.087 Sum_probs=109.9
Q ss_pred ccccCCCCceEEEEEEcCCCCcch-----hhhccCC-cceEEEeecccCCccccCchhhHHHhcC-----CceeEEEeec
Q 037953 65 LLINTCPEKLRHLMLVLGYEAPSL-----VSIFNAI-KLRSLILFYWIPNLDAMLPVLKGIFDQL-----TCLRALRIEG 133 (625)
Q Consensus 65 ~~~~~~~~~lr~L~l~~~~~~~~~-----~~~~~l~-~Lr~L~L~~~~~~~~~~lp~~~~~~~~l-----~~Lr~L~Ls~ 133 (625)
|.....+.++++|++++|.+...+ ..+..++ +|++|++++|. +....+ ..+..+ ++|++|+|+
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~---~~l~~~l~~~~~~L~~L~Ls- 88 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS--LGFKNS---DELVQILAAIPANVTSLNLS- 88 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC--GGGSCH---HHHHHHHHTSCTTCCEEECC-
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC--CCHHHH---HHHHHHHhccCCCccEEECc-
Confidence 444556778999999999986554 5677888 99999999975 444444 556654 999999999
Q ss_pred CCCccccccchhhh-hcc----cccc-cccceecC--CCCCCCch-h----hcC-CCCCceEeecCCCCCC-----cccc
Q 037953 134 TDNWELEEDQTNEI-LNG----VEKL-IHLRYLKL--NLVGDLPE-K----CCE-LLNLQTLELENSSHFK-----RFPQ 194 (625)
Q Consensus 134 c~~~~~~~~~l~~l-p~~----~~~L-~~L~~L~L--~~l~~lP~-~----i~~-L~~L~~L~L~~~~~l~-----~lp~ 194 (625)
+|.+... +.. +..+ ++|++|+| |.+...+. . +.. .++|++|+|++|. ++ .++.
T Consensus 89 -------~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~ 160 (362)
T 3goz_A 89 -------GNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQ 160 (362)
T ss_dssp -------SSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHH
T ss_pred -------CCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHH
Confidence 7776644 333 4445 89999999 44666543 3 344 3699999999998 76 4555
Q ss_pred cccccc-ccceEEecCcccccccc-----cCCCc-cccccCCceEe
Q 037953 195 GIGKLI-NLRHLIFTEDLLEYMPK-----GIEKL-TSLRTLSEFVV 233 (625)
Q Consensus 195 ~l~~L~-~L~~L~l~~~~l~~lp~-----~i~~L-~~L~~L~~~~~ 233 (625)
.+..++ +|++|++++|.++..+. .+..+ ++|++|++..+
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 566666 99999998888866542 22333 46666665433
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=1.3e-13 Score=131.74 Aligned_cols=143 Identities=20% Similarity=0.229 Sum_probs=94.5
Q ss_pred EEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh-hcccccc
Q 037953 76 HLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVEKL 154 (625)
Q Consensus 76 ~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~L 154 (625)
.+++.++.+..+|..+. ++|++|++++|. +....+ ..|..+++|++|+|+ +|.+..+ |..|.++
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~--i~~i~~---~~~~~l~~L~~L~Ls--------~N~i~~~~~~~~~~l 79 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNT--IKVIPP---GAFSPYKKLRRIDLS--------NNQISELAPDAFQGL 79 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSC--CCEECT---TSSTTCTTCCEEECC--------SSCCCEECTTTTTTC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCc--CCCcCH---hHhhCCCCCCEEECC--------CCcCCCcCHHHhhCC
Confidence 45555566666666543 567777777754 344444 567777777777777 7776655 5667777
Q ss_pred cccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCcc-ccccccccccceEEecCccccccccc-CCCccccccCC
Q 037953 155 IHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRF-PQGIGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLS 229 (625)
Q Consensus 155 ~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~ 229 (625)
++|++|+| ++ +..+|.. +..+++|++|+|++|. +..+ |..+..+++|++|++++|.++.+|.. +..+++|+.|+
T Consensus 80 ~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 158 (220)
T 2v9t_B 80 RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK-INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMH 158 (220)
T ss_dssp SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC-CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEE
Confidence 77777777 33 7777655 4667777777777777 6655 34477777777777777777776654 66666666666
Q ss_pred ceEec
Q 037953 230 EFVVA 234 (625)
Q Consensus 230 ~~~~~ 234 (625)
+..+.
T Consensus 159 L~~N~ 163 (220)
T 2v9t_B 159 LAQNP 163 (220)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 54443
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.44 E-value=3.2e-13 Score=135.03 Aligned_cols=148 Identities=22% Similarity=0.235 Sum_probs=128.3
Q ss_pred CCCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 69 TCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 69 ~~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
...++++.|++++|.+..+++ +.++++|++|++++|. ...+| . +..+++|++|+++ +|.+..++
T Consensus 65 ~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~---l~~~~---~-l~~l~~L~~L~L~--------~n~i~~~~ 128 (291)
T 1h6t_A 65 QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK---VKDLS---S-LKDLKKLKSLSLE--------HNGISDIN 128 (291)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC---CCCGG---G-GTTCTTCCEEECT--------TSCCCCCG
T ss_pred hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc---CCCCh---h-hccCCCCCEEECC--------CCcCCCCh
Confidence 346799999999999988877 8999999999999976 33444 3 8999999999999 88888775
Q ss_pred cccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccc
Q 037953 149 NGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLR 226 (625)
Q Consensus 149 ~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~ 226 (625)
.+..+++|++|++ ++ +..+ ..++++++|++|++++|. +..++. +..+++|++|++++|.++.+|. +..+++|+
T Consensus 129 -~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~ 203 (291)
T 1h6t_A 129 -GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLD 203 (291)
T ss_dssp -GGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCS
T ss_pred -hhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh-hcCCCccCEEECCCCcCCCChh-hccCCCCC
Confidence 6999999999999 44 8888 589999999999999998 888876 9999999999999999999874 88899999
Q ss_pred cCCceEecCCC
Q 037953 227 TLSEFVVASGG 237 (625)
Q Consensus 227 ~L~~~~~~~~~ 237 (625)
.|++..+....
T Consensus 204 ~L~l~~n~i~~ 214 (291)
T 1h6t_A 204 VLELFSQECLN 214 (291)
T ss_dssp EEEEEEEEEEC
T ss_pred EEECcCCcccC
Confidence 99988765443
No 103
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.43 E-value=1e-13 Score=126.55 Aligned_cols=131 Identities=22% Similarity=0.142 Sum_probs=66.3
Q ss_pred CCceEEEEEEcCCCC--cchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhh-h
Q 037953 71 PEKLRHLMLVLGYEA--PSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE-I 147 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~--~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~-l 147 (625)
++++++|++.+|.+. .+|..+..+++|++|++++|. +... + .+..+++|++|+++ +|.+.. +
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~--l~~~-~----~~~~l~~L~~L~Ls--------~N~l~~~~ 87 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG--LISV-S----NLPKLPKLKKLELS--------ENRIFGGL 87 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC--CCCC-S----SCCCCSSCCEEEEE--------SCCCCSCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC--CCCh-h----hhccCCCCCEEECc--------CCcCchHH
Confidence 345555555555554 455545555555555555543 1111 1 24555555555555 555443 4
Q ss_pred hcccccccccceecC-CC-CCCCc--hhhcCCCCCceEeecCCCCCCcccc----ccccccccceEEecCcccccccc
Q 037953 148 LNGVEKLIHLRYLKL-NL-VGDLP--EKCCELLNLQTLELENSSHFKRFPQ----GIGKLINLRHLIFTEDLLEYMPK 217 (625)
Q Consensus 148 p~~~~~L~~L~~L~L-~~-l~~lP--~~i~~L~~L~~L~L~~~~~l~~lp~----~l~~L~~L~~L~l~~~~l~~lp~ 217 (625)
|..+.++++|++|++ ++ +..+| ..+..+++|++|++++|. +..+|. .+..+++|++|++..+...++|.
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred HHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 444444555555555 22 55544 445555555555555555 444444 35555555555554444444443
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.41 E-value=3.2e-13 Score=129.10 Aligned_cols=146 Identities=18% Similarity=0.153 Sum_probs=110.8
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-cccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEK 153 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~ 153 (625)
+.++++++.+..+|..+. +.+++|++++|. +....| ...|..+++|++|+|+ +|.+..++. .|..
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~--l~~~~~--~~~~~~l~~L~~L~L~--------~N~i~~i~~~~~~~ 79 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNE--FTVLEA--TGIFKKLPQLRKINFS--------NNKITDIEEGAFEG 79 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSC--CCEECC--CCCGGGCTTCCEEECC--------SSCCCEECTTTTTT
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCc--CCccCc--hhhhccCCCCCEEECC--------CCcCCEECHHHhCC
Confidence 367788888888887553 467889999875 333322 0457888999999999 888777754 6888
Q ss_pred ccccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCcc-ccccccccccceEEecCcccccc-cccCCCccccccC
Q 037953 154 LIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRF-PQGIGKLINLRHLIFTEDLLEYM-PKGIEKLTSLRTL 228 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L 228 (625)
+++|++|+| ++ +..+|. .+.++++|++|+|++|. +..+ |..+..+++|++|+++.|.++.+ |..+..+++|+.|
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 999999999 44 777765 48889999999999998 7666 56688889999999988888877 5667888888888
Q ss_pred CceEecC
Q 037953 229 SEFVVAS 235 (625)
Q Consensus 229 ~~~~~~~ 235 (625)
++..+..
T Consensus 159 ~L~~N~l 165 (220)
T 2v70_A 159 NLLANPF 165 (220)
T ss_dssp ECCSCCE
T ss_pred EecCcCC
Confidence 7665543
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.41 E-value=6e-13 Score=130.90 Aligned_cols=145 Identities=17% Similarity=0.122 Sum_probs=107.6
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
..+++.|++.+|.+..++ .+..+++|++|++++|. ...+| . +.++++|++|+++ +|.+..+|.
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~---i~~~~---~-l~~l~~L~~L~L~--------~N~l~~l~~- 102 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ---ISDLS---P-LKDLTKLEELSVN--------RNRLKNLNG- 102 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC---CCCCG---G-GTTCSSCCEEECC--------SSCCSCCTT-
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc---cCCCh---h-hccCCCCCEEECC--------CCccCCcCc-
Confidence 457788888888777776 57778888888888865 33444 4 7788888888888 777777764
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccC
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTL 228 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 228 (625)
+.. ++|++|++ ++ +..+| .+.++++|++|++++|. ++.+| .++.+++|++|++++|.+..+ ..+..+++|+.|
T Consensus 103 ~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L 177 (263)
T 1xeu_A 103 IPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWI 177 (263)
T ss_dssp CCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEE
T ss_pred ccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh-HHccCCCCCEEECCCCcCcch-HHhccCCCCCEE
Confidence 333 78888888 33 77775 58888888888888887 77775 678888888888877777777 567777778877
Q ss_pred CceEecCCC
Q 037953 229 SEFVVASGG 237 (625)
Q Consensus 229 ~~~~~~~~~ 237 (625)
++..+....
T Consensus 178 ~l~~N~~~~ 186 (263)
T 1xeu_A 178 DLTGQKCVN 186 (263)
T ss_dssp EEEEEEEEC
T ss_pred eCCCCcccC
Confidence 776665443
No 106
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=3.1e-13 Score=128.01 Aligned_cols=126 Identities=25% Similarity=0.348 Sum_probs=66.7
Q ss_pred CCceEEEEEEcCCCCcchh-hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 71 PEKLRHLMLVLGYEAPSLV-SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
++++++|++++|.+..++. .+..+++|++|++++|. +....+ ..|..+++|++|+++ +|.+..+|.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~---~~~~~l~~L~~L~Ls--------~n~l~~~~~ 93 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK--LQSLPN---GVFNKLTSLTYLNLS--------TNQLQSLPN 93 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCT---TTTTTCTTCCEEECC--------SSCCCCCCT
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc--cCccCh---hhcCCCCCcCEEECC--------CCcCCccCH
Confidence 3455566666655544443 24455666666666543 233333 445555666666666 555555443
Q ss_pred c-cccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccc-cccccccceEEecCc
Q 037953 150 G-VEKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTED 210 (625)
Q Consensus 150 ~-~~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~ 210 (625)
. |+.+++|++|++ ++ +..+|.. +.++++|++|++++|. ++.+|.. +.++++|++|+++.|
T Consensus 94 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 94 GVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred hHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCC
Confidence 3 455566666666 22 5555443 4555666666666655 5555443 455556666666444
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.40 E-value=5.7e-13 Score=134.57 Aligned_cols=195 Identities=16% Similarity=0.040 Sum_probs=130.4
Q ss_pred CceEEEEEEcCCCC-cchhhh--ccCCcceEEEeecccCCccccCchh-hHHHhcCCceeEEEeecCCCccccccchhhh
Q 037953 72 EKLRHLMLVLGYEA-PSLVSI--FNAIKLRSLILFYWIPNLDAMLPVL-KGIFDQLTCLRALRIEGTDNWELEEDQTNEI 147 (625)
Q Consensus 72 ~~lr~L~l~~~~~~-~~~~~~--~~l~~Lr~L~L~~~~~~~~~~lp~~-~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l 147 (625)
.++++|++.+|.+. ..|..+ ..+++|++|++++|. +....|.+ ...+..+++|++|+|+ +|.+..+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~--i~~~~~~~~~~~~~~~~~L~~L~Ls--------~n~l~~~ 160 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS--WATGRSWLAELQQWLKPGLKVLSIA--------QAHSPAF 160 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC--CSSTTSSHHHHHTTBCSCCCEEEEE--------CCSSCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc--ccchhhhhHHHHhhhccCCCEEEee--------CCCcchh
Confidence 35888888888874 555565 778889999998875 22222200 1234578889999998 8887665
Q ss_pred h-cccccccccceecC--CCCCC---Cchh--hcCCCCCceEeecCCCCCCccccc----cccccccceEEecCcccccc
Q 037953 148 L-NGVEKLIHLRYLKL--NLVGD---LPEK--CCELLNLQTLELENSSHFKRFPQG----IGKLINLRHLIFTEDLLEYM 215 (625)
Q Consensus 148 p-~~~~~L~~L~~L~L--~~l~~---lP~~--i~~L~~L~~L~L~~~~~l~~lp~~----l~~L~~L~~L~l~~~~l~~l 215 (625)
| ..++.+++|++|+| |.+.. +|.. ++++++|++|++++|. ++.+|.. ++.+++|++|++++|.++.+
T Consensus 161 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 161 SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 4 56888888999998 43432 3322 3688889999998888 7766653 46778899999988888776
Q ss_pred -cccCCCc---cccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEE
Q 037953 216 -PKGIEKL---TSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILR 291 (625)
Q Consensus 216 -p~~i~~L---~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 291 (625)
|..++.+ ++|++|++..+.... ++..+. ++|+ .|++++..- ... ..+..+++|+.|+++
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~N~l~~-----lp~~~~-----~~L~-~L~Ls~N~l-~~~-----~~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSFAGLEQ-----VPKGLP-----AKLR-VLDLSSNRL-NRA-----PQPDELPEVDNLTLD 302 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCSSCCCS-----CCSCCC-----SCCS-CEECCSCCC-CSC-----CCTTSCCCCSCEECS
T ss_pred chhhHHhccCcCcCCEEECCCCCCCc-----hhhhhc-----CCCC-EEECCCCcC-CCC-----chhhhCCCccEEECc
Confidence 7777766 477777766554443 222221 4555 666665321 111 125677899999998
Q ss_pred Eec
Q 037953 292 FKD 294 (625)
Q Consensus 292 ~~~ 294 (625)
+|.
T Consensus 303 ~N~ 305 (310)
T 4glp_A 303 GNP 305 (310)
T ss_dssp STT
T ss_pred CCC
Confidence 875
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.40 E-value=3.6e-13 Score=147.89 Aligned_cols=141 Identities=17% Similarity=0.186 Sum_probs=88.3
Q ss_pred CceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhccc
Q 037953 72 EKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGV 151 (625)
Q Consensus 72 ~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~ 151 (625)
.+++.|++.++.+..++ .+..+++|+.|+|++|. ...+| . +..+++|++|+|+ +|.+..+| .+
T Consensus 43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~---l~~~~---~-l~~l~~L~~L~Ls--------~N~l~~l~-~l 105 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK---LTDIK---P-LTNLKNLGWLFLD--------ENKIKDLS-SL 105 (605)
T ss_dssp TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC---CCCCG---G-GGGCTTCCEEECC--------SSCCCCCT-TS
T ss_pred CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC---CCCCh---h-hccCCCCCEEECc--------CCCCCCCh-hh
Confidence 45666666666665554 45667777777777754 22233 2 6677777777777 66665555 56
Q ss_pred ccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCC
Q 037953 152 EKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLS 229 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~ 229 (625)
..+++|++|+| ++ +..+| .+..+++|+.|+|++|. +..+ ..++.+++|++|++++|.+..++. +..+++|+.|+
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~-l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~ 181 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLY 181 (605)
T ss_dssp TTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSC-CCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEE
T ss_pred ccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCc-cCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEE
Confidence 66777777777 33 66653 46667777777777776 6655 456667777777776666666554 56666666665
Q ss_pred ceEe
Q 037953 230 EFVV 233 (625)
Q Consensus 230 ~~~~ 233 (625)
+..+
T Consensus 182 Ls~N 185 (605)
T 1m9s_A 182 LSKN 185 (605)
T ss_dssp CCSS
T ss_pred CcCC
Confidence 5444
No 109
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.39 E-value=3.9e-13 Score=122.63 Aligned_cols=130 Identities=20% Similarity=0.207 Sum_probs=111.6
Q ss_pred cCCcceEEEeecccCCcc-ccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC--CCCCC-C
Q 037953 93 NAIKLRSLILFYWIPNLD-AMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL--NLVGD-L 168 (625)
Q Consensus 93 ~l~~Lr~L~L~~~~~~~~-~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L--~~l~~-l 168 (625)
..++|++|++++|. +. +.+| ..+..+++|++|+++ +|.+..+ ..++.+++|++|++ |.+.. +
T Consensus 22 ~~~~L~~L~l~~n~--l~~~~i~---~~~~~l~~L~~L~l~--------~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~ 87 (168)
T 2ell_A 22 TPAAVRELVLDNCK--SNDGKIE---GLTAEFVNLEFLSLI--------NVGLISV-SNLPKLPKLKKLELSENRIFGGL 87 (168)
T ss_dssp CTTSCSEEECCSCB--CBTTBCS---SCCGGGGGCCEEEEE--------SSCCCCC-SSCCCCSSCCEEEEESCCCCSCC
T ss_pred CcccCCEEECCCCC--CChhhHH---HHHHhCCCCCEEeCc--------CCCCCCh-hhhccCCCCCEEECcCCcCchHH
Confidence 45889999999986 33 3667 778999999999999 8887777 67999999999999 44666 8
Q ss_pred chhhcCCCCCceEeecCCCCCCccc--cccccccccceEEecCcccccccc----cCCCccccccCCceEecCCC
Q 037953 169 PEKCCELLNLQTLELENSSHFKRFP--QGIGKLINLRHLIFTEDLLEYMPK----GIEKLTSLRTLSEFVVASGG 237 (625)
Q Consensus 169 P~~i~~L~~L~~L~L~~~~~l~~lp--~~l~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~~~~~~~~~ 237 (625)
|..+.++++|++|++++|. ++.+| ..++.+++|++|+++.|.+..+|. .+..+++|+.|++..+....
T Consensus 88 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CHHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred HHHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 8888889999999999998 88887 679999999999999999999887 68889999999988776543
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.38 E-value=7.1e-13 Score=127.54 Aligned_cols=131 Identities=25% Similarity=0.332 Sum_probs=114.3
Q ss_pred CCCceEEEEEEcCCCCcc-hhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPS-LVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~-~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.+.+++.|++++|.+..+ |..+..+++|++|++++|. +....+ ..|..+++|++|+|+ +|.+..+|
T Consensus 38 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~--l~~i~~---~~~~~l~~L~~L~Ls--------~N~l~~l~ 104 (229)
T 3e6j_A 38 IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ--LGALPV---GVFDSLTQLTVLDLG--------TNQLTVLP 104 (229)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCT---TTTTTCTTCCEEECC--------SSCCCCCC
T ss_pred CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC--CCCcCh---hhcccCCCcCEEECC--------CCcCCccC
Confidence 468999999999999766 6678899999999999976 455555 678999999999999 99988886
Q ss_pred cc-cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccc
Q 037953 149 NG-VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEY 214 (625)
Q Consensus 149 ~~-~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~ 214 (625)
.. |..+++|++|+| ++ +..+|..+.++++|++|+|++|. +..+|.. +..+++|++|++..|.+..
T Consensus 105 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred hhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 54 789999999999 55 99999999999999999999998 8888865 8899999999998887654
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=1.3e-13 Score=135.57 Aligned_cols=131 Identities=18% Similarity=0.104 Sum_probs=77.5
Q ss_pred EEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhccccccccc
Q 037953 78 MLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHL 157 (625)
Q Consensus 78 ~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L 157 (625)
.+..+.+..++ .+.++++|++|++++|. ...+| .+..+++|++|+|+ +|.+..+|. ++++++|
T Consensus 25 ~l~~~~i~~~~-~~~~l~~L~~L~l~~n~---i~~l~----~l~~l~~L~~L~L~--------~N~i~~~~~-l~~l~~L 87 (263)
T 1xeu_A 25 NLGKQSVTDLV-SQKELSGVQNFNGDNSN---IQSLA----GMQFFTNLKELHLS--------HNQISDLSP-LKDLTKL 87 (263)
T ss_dssp HHTCSCTTSEE-CHHHHTTCSEEECTTSC---CCCCT----TGGGCTTCCEEECC--------SSCCCCCGG-GTTCSSC
T ss_pred HhcCCCccccc-chhhcCcCcEEECcCCC---cccch----HHhhCCCCCEEECC--------CCccCCChh-hccCCCC
Confidence 33344444444 45566677777777654 22333 25666777777777 666666654 6666777
Q ss_pred ceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccccccCCCccccccCCc
Q 037953 158 RYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTLSE 230 (625)
Q Consensus 158 ~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~~ 230 (625)
++|++ ++ +..+|.... ++|++|++++|. ++.+| .++++++|++|++++|.++.+| .++.+++|+.|++
T Consensus 88 ~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~-l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L 157 (263)
T 1xeu_A 88 EELSVNRNRLKNLNGIPS--ACLSRLFLDNNE-LRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDL 157 (263)
T ss_dssp CEEECCSSCCSCCTTCCC--SSCCEEECCSSC-CSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEEC
T ss_pred CEEECCCCccCCcCcccc--CcccEEEccCCc-cCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEEC
Confidence 77777 33 666654322 667777777766 66654 4666677777777666666654 4555555555544
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=2.3e-13 Score=147.82 Aligned_cols=34 Identities=15% Similarity=0.008 Sum_probs=19.7
Q ss_pred CcEEEEeccCCCcccCCchhhcccccccEEEEeCCCC
Q 037953 327 LESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPT 363 (625)
Q Consensus 327 L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~ 363 (625)
|+.|++++|....+ |.++..+++|+.|+|++|..
T Consensus 209 L~~L~Ls~N~l~~l---p~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 209 EIFFRCRENRITHI---PENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp CEEEECCSSCCCCC---CGGGGGSCTTEEEECCSSSC
T ss_pred ceEEecCCCcceec---CHHHhcCCCCCEEEeeCCcC
Confidence 35555655555554 55555566666666666543
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.38 E-value=2.2e-13 Score=147.98 Aligned_cols=180 Identities=14% Similarity=0.161 Sum_probs=115.6
Q ss_pred ceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCcccccccccccc
Q 037953 125 CLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINL 202 (625)
Q Consensus 125 ~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L 202 (625)
+|++|+|+ +|.+..+|..+. ++|++|+| ++ +..+| ..+++|++|++++|. ++.+|. +.+ +|
T Consensus 60 ~L~~L~Ls--------~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLN--------RLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEECC--------SSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TC
T ss_pred CccEEEeC--------CCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CC
Confidence 77777777 777666776553 67777777 33 77777 456777777777776 777776 554 77
Q ss_pred ceEEecCcccccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCC
Q 037953 203 RHLIFTEDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKK 282 (625)
Q Consensus 203 ~~L~l~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l 282 (625)
++|++++|.++.+|. .+++|+.|++..+.... ++. .+
T Consensus 123 ~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~-----lp~-----------------------------------~l 159 (571)
T 3cvr_A 123 KHLDVDNNQLTMLPE---LPALLEYINADNNQLTM-----LPE-----------------------------------LP 159 (571)
T ss_dssp CEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-----CCC-----------------------------------CC
T ss_pred CEEECCCCcCCCCCC---cCccccEEeCCCCccCc-----CCC-----------------------------------cC
Confidence 777777777777765 45556555543322111 000 12
Q ss_pred CCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhcccccc-------cE
Q 037953 283 KNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNML-------KK 355 (625)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L-------~~ 355 (625)
++|+.|++++|.++ .++. +. ++|+.|++++|....+ |. +.. +| +.
T Consensus 160 ~~L~~L~Ls~N~L~-------------------~lp~-l~--~~L~~L~Ls~N~L~~l---p~-~~~--~L~~~~~~L~~ 211 (571)
T 3cvr_A 160 TSLEVLSVRNNQLT-------------------FLPE-LP--ESLEALDVSTNLLESL---PA-VPV--RNHHSEETEIF 211 (571)
T ss_dssp TTCCEEECCSSCCS-------------------CCCC-CC--TTCCEEECCSSCCSSC---CC-CC----------CCEE
T ss_pred CCcCEEECCCCCCC-------------------Ccch-hh--CCCCEEECcCCCCCch---hh-HHH--hhhcccccceE
Confidence 45666666665422 1222 22 6788888888877766 66 443 66 99
Q ss_pred EEEeCCCCCCCCCC-CCCCCCcceeeccccccceeeCcc
Q 037953 356 LRLLNCPTCEIMPP-LGQLPSLEILLIKDMTSVERVGDE 393 (625)
Q Consensus 356 L~L~~c~~l~~l~~-l~~l~~L~~L~L~~~~~l~~l~~~ 393 (625)
|++++| .++.+|. +..+++|+.|+|++|+..+.+|..
T Consensus 212 L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 212 FRCREN-RITHIPENILSLDPTCTIILEDNPLSSRIRES 249 (571)
T ss_dssp EECCSS-CCCCCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred EecCCC-cceecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence 999985 5667774 777999999999998855555544
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.37 E-value=3.8e-15 Score=162.57 Aligned_cols=173 Identities=18% Similarity=0.182 Sum_probs=117.8
Q ss_pred CCceEEEEEEcCCCCcchhhhccCCcceEEEeeccc-----------CCccccCchhhHHHhcCCceeEEE-eecCCCcc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWI-----------PNLDAMLPVLKGIFDQLTCLRALR-IEGTDNWE 138 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~-----------~~~~~~lp~~~~~~~~l~~Lr~L~-Ls~c~~~~ 138 (625)
.+.+++|++++|.+..+|+.+..+++|+.|++++|. ....+.+| ..++.+++|+.|+ ++
T Consensus 348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~---~~l~~l~~L~~L~~l~------ 418 (567)
T 1dce_A 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEK---ETLQYFSTLKAVDPMR------ 418 (567)
T ss_dssp TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHH---HHHHHHHHHHHHCGGG------
T ss_pred CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCH---HHHHHHHhcccCcchh------
Confidence 345567778888888888888888888888876542 01234556 7777888888887 55
Q ss_pred ccccchhhhhc------ccccc--cccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEec
Q 037953 139 LEEDQTNEILN------GVEKL--IHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFT 208 (625)
Q Consensus 139 ~~~~~l~~lp~------~~~~L--~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~ 208 (625)
.+.+..++. .+..+ ..|++|+| ++ +..+|. ++++++|++|+|++|. ++.+|..++++++|++|+++
T Consensus 419 --~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 419 --AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQAS 494 (567)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECC
T ss_pred --hcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECC
Confidence 444333321 11111 25788888 44 777876 8888888888888887 77888888888888888888
Q ss_pred CcccccccccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEec
Q 037953 209 EDLLEYMPKGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRG 264 (625)
Q Consensus 209 ~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~ 264 (625)
+|.++.+| .++.+++|+.|++..+.... . ..+..+..+++|+ .|.+++
T Consensus 495 ~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~-----~-~~p~~l~~l~~L~-~L~L~~ 542 (567)
T 1dce_A 495 DNALENVD-GVANLPRLQELLLCNNRLQQ-----S-AAIQPLVSCPRLV-LLNLQG 542 (567)
T ss_dssp SSCCCCCG-GGTTCSSCCEEECCSSCCCS-----S-STTGGGGGCTTCC-EEECTT
T ss_pred CCCCCCCc-ccCCCCCCcEEECCCCCCCC-----C-CCcHHHhcCCCCC-EEEecC
Confidence 88888887 78888888888776655443 1 1134455555555 566654
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.37 E-value=9e-13 Score=124.81 Aligned_cols=143 Identities=27% Similarity=0.382 Sum_probs=117.6
Q ss_pred EEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc-cccc
Q 037953 76 HLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG-VEKL 154 (625)
Q Consensus 76 ~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~-~~~L 154 (625)
.+...++....+|..+ .++|++|++++|. +....+ ..|.++++|++|+++ +|.+..+|.. |..+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~--l~~~~~---~~~~~l~~L~~L~l~--------~n~l~~~~~~~~~~l 75 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNS--LKSLPN---GVFDELTSLTQLYLG--------GNKLQSLPNGVFNKL 75 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSC--CCCCCT---TTTTTCTTCSEEECC--------SSCCCCCCTTTTTTC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCc--cCcCCh---hhhcccccCcEEECC--------CCccCccChhhcCCC
Confidence 4566667777777654 4689999999975 445555 678999999999999 8888888654 7899
Q ss_pred cccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccccccc-CCCccccccCC
Q 037953 155 IHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLS 229 (625)
Q Consensus 155 ~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~ 229 (625)
++|++|++ ++ +..+|.. +.++++|++|++++|. ++.+|.. +.++++|++|+++.|.++.+|.. +..+++|+.|+
T Consensus 76 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 154 (208)
T 2o6s_A 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW 154 (208)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred CCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEE
Confidence 99999999 44 8888765 6899999999999998 8888776 78999999999988999888876 67888888887
Q ss_pred ceEec
Q 037953 230 EFVVA 234 (625)
Q Consensus 230 ~~~~~ 234 (625)
+..+.
T Consensus 155 l~~N~ 159 (208)
T 2o6s_A 155 LHDNP 159 (208)
T ss_dssp CCSCC
T ss_pred ecCCC
Confidence 76553
No 116
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.36 E-value=9.4e-13 Score=125.80 Aligned_cols=131 Identities=20% Similarity=0.255 Sum_probs=113.7
Q ss_pred CCCceEEEEEEcCCCCcchh-hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLV-SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL 148 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~-~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp 148 (625)
.+++++.|++.+|.+..+++ .+..+++|++|++++|. +....| ..|.++++|++|+|+ +|.+..+|
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~--i~~~~~---~~~~~l~~L~~L~Ls--------~N~l~~l~ 96 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ--ISELAP---DAFQGLRSLNSLVLY--------GNKITELP 96 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC--CCEECT---TTTTTCSSCCEEECC--------SSCCCCCC
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc--CCCcCH---HHhhCCcCCCEEECC--------CCcCCccC
Confidence 45789999999999988765 78899999999999976 556667 889999999999999 99999888
Q ss_pred cc-cccccccceecC-CC-CCCC-chhhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccc
Q 037953 149 NG-VEKLIHLRYLKL-NL-VGDL-PEKCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEY 214 (625)
Q Consensus 149 ~~-~~~L~~L~~L~L-~~-l~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~ 214 (625)
.. |..+++|++|+| ++ +..+ |..+.++++|++|+|++|. ++.+|.. +..+++|++|+++.|.+..
T Consensus 97 ~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred HhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 65 789999999999 44 7777 5679999999999999999 8888765 8899999999998887643
No 117
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=3.4e-13 Score=120.38 Aligned_cols=123 Identities=24% Similarity=0.250 Sum_probs=89.8
Q ss_pred CCcceEEEeecccCCcc-ccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC--CCCCC-Cc
Q 037953 94 AIKLRSLILFYWIPNLD-AMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL--NLVGD-LP 169 (625)
Q Consensus 94 l~~Lr~L~L~~~~~~~~-~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L--~~l~~-lP 169 (625)
.++|+.|++++|. +. +.+| ..+..+++|++|+++ +|.+..+ ..++++++|++|++ |.+.. +|
T Consensus 16 ~~~l~~L~l~~n~--l~~~~~~---~~~~~l~~L~~L~l~--------~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~ 81 (149)
T 2je0_A 16 PSDVKELVLDNSR--SNEGKLE---GLTDEFEELEFLSTI--------NVGLTSI-ANLPKLNKLKKLELSDNRVSGGLE 81 (149)
T ss_dssp GGGCSEEECTTCB--CBTTBCC---SCCTTCTTCCEEECT--------TSCCCCC-TTCCCCTTCCEEECCSSCCCSCTH
T ss_pred CccCeEEEccCCc--CChhHHH---HHHhhcCCCcEEECc--------CCCCCCc-hhhhcCCCCCEEECCCCcccchHH
Confidence 4678888888865 23 3556 667778888888888 7776666 56778888888888 33655 77
Q ss_pred hhhcCCCCCceEeecCCCCCCccc--cccccccccceEEecCcccccccc----cCCCccccccCCce
Q 037953 170 EKCCELLNLQTLELENSSHFKRFP--QGIGKLINLRHLIFTEDLLEYMPK----GIEKLTSLRTLSEF 231 (625)
Q Consensus 170 ~~i~~L~~L~~L~L~~~~~l~~lp--~~l~~L~~L~~L~l~~~~l~~lp~----~i~~L~~L~~L~~~ 231 (625)
..++++++|++|++++|. ++.+| ..++.+++|++|++++|.++.+|. .++.+++|+.|++.
T Consensus 82 ~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777778888888888887 77665 667888888888887777777765 46667777777653
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.34 E-value=2.7e-12 Score=120.36 Aligned_cols=130 Identities=17% Similarity=0.163 Sum_probs=109.0
Q ss_pred cCCCCceEEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhh-
Q 037953 68 NTCPEKLRHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE- 146 (625)
Q Consensus 68 ~~~~~~lr~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~- 146 (625)
.....+++.|++++|.+..++ .+..+++|++|++++|. +....| ..++.+++|++|+++ +|.+..
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~--l~~~~~---~~l~~l~~L~~L~Ls--------~n~i~~~ 127 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKD--VTSDKI---PNLSGLTSLTLLDIS--------HSAHDDS 127 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTT--CBGGGS---CCCTTCTTCCEEECC--------SSBCBGG
T ss_pred HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCc--cCcccC---hhhcCCCCCCEEEec--------CCccCcH
Confidence 344678999999999776554 77889999999999975 444445 668999999999999 888664
Q ss_pred hhcccccccccceecC--CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCccccc
Q 037953 147 ILNGVEKLIHLRYLKL--NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEY 214 (625)
Q Consensus 147 lp~~~~~L~~L~~L~L--~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~ 214 (625)
.|..++.+++|++|++ |. +..+| .+..+++|++|++++|. +..++ .+..+++|++|++++|.++.
T Consensus 128 ~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 128 ILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCT-TGGGCSSCCEEEECBC----
T ss_pred hHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChH-HhccCCCCCEEEeeCcccCC
Confidence 6778999999999999 76 89997 79999999999999999 88887 79999999999998887653
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.34 E-value=7.3e-13 Score=121.83 Aligned_cols=128 Identities=21% Similarity=0.219 Sum_probs=90.5
Q ss_pred hccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCC
Q 037953 91 IFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDL 168 (625)
Q Consensus 91 ~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~l 168 (625)
+.++++|++|++++|. ...+| ......++|++|+++ +|.+..+ ..++.+++|++|++ ++ +..+
T Consensus 15 ~~~~~~L~~L~l~~n~---l~~i~---~~~~~~~~L~~L~Ls--------~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~ 79 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK---IPVIE---NLGATLDQFDAIDFS--------DNEIRKL-DGFPLLRRLKTLLVNNNRICRI 79 (176)
T ss_dssp EECTTSCEEEECTTSC---CCSCC---CGGGGTTCCSEEECC--------SSCCCEE-CCCCCCSSCCEEECCSSCCCEE
T ss_pred cCCcCCceEEEeeCCC---CchhH---HhhhcCCCCCEEECC--------CCCCCcc-cccccCCCCCEEECCCCccccc
Confidence 4566778888888865 22334 433333478888888 7776666 46777888888888 44 7777
Q ss_pred chhh-cCCCCCceEeecCCCCCCcccc--ccccccccceEEecCccccccccc----CCCccccccCCceEec
Q 037953 169 PEKC-CELLNLQTLELENSSHFKRFPQ--GIGKLINLRHLIFTEDLLEYMPKG----IEKLTSLRTLSEFVVA 234 (625)
Q Consensus 169 P~~i-~~L~~L~~L~L~~~~~l~~lp~--~l~~L~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~~~~~~ 234 (625)
|..+ +.+++|++|++++|. ++.+|. .++.+++|++|++++|.+..+|.. ++.+++|+.|++..+.
T Consensus 80 ~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 80 GEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CcchhhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 7554 778888888888887 777776 677888888888877777777764 6777777777765543
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.34 E-value=1.4e-12 Score=124.53 Aligned_cols=130 Identities=14% Similarity=0.147 Sum_probs=111.2
Q ss_pred CCCceEEEEEEcCCCCcchh--hhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLV--SIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~--~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l 147 (625)
.+..++.|++++|.+..+++ .+..+++|++|++++|. +....+ ..|.++++|++|+|+ +|.+..+
T Consensus 30 ~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~--i~~i~~---~~~~~l~~L~~L~Ls--------~N~l~~~ 96 (220)
T 2v70_A 30 IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK--ITDIEE---GAFEGASGVNEILLT--------SNRLENV 96 (220)
T ss_dssp CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC--CCEECT---TTTTTCTTCCEEECC--------SSCCCCC
T ss_pred CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc--CCEECH---HHhCCCCCCCEEECC--------CCccCcc
Confidence 45678999999999987743 47899999999999976 455556 689999999999999 9998877
Q ss_pred hc-ccccccccceecC-CC-CCCC-chhhcCCCCCceEeecCCCCCCcc-ccccccccccceEEecCcccc
Q 037953 148 LN-GVEKLIHLRYLKL-NL-VGDL-PEKCCELLNLQTLELENSSHFKRF-PQGIGKLINLRHLIFTEDLLE 213 (625)
Q Consensus 148 p~-~~~~L~~L~~L~L-~~-l~~l-P~~i~~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~~L~l~~~~l~ 213 (625)
|. .|..+++|++|+| ++ +..+ |..+.++++|++|+|++|. ++.+ |..+..+++|++|+++.|.+.
T Consensus 97 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 97 QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEecCcCCc
Confidence 54 4999999999999 44 7766 6789999999999999999 7777 677999999999999888764
No 121
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=7.6e-13 Score=136.68 Aligned_cols=126 Identities=21% Similarity=0.166 Sum_probs=55.2
Q ss_pred EEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHh-cCCceeEEEeecCCCccccccchhhhh-cccccc
Q 037953 77 LMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFD-QLTCLRALRIEGTDNWELEEDQTNEIL-NGVEKL 154 (625)
Q Consensus 77 L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~-~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~L 154 (625)
+++.++.+..+|..+. +.++.|+|++|. +....+ ..|. ++++|++|+|+ +|.+..++ ..|.++
T Consensus 23 l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~--l~~l~~---~~~~~~l~~L~~L~L~--------~N~i~~i~~~~~~~l 87 (361)
T 2xot_A 23 LSCSKQQLPNVPQSLP--SYTALLDLSHNN--LSRLRA---EWTPTRLTNLHSLLLS--------HNHLNFISSEAFVPV 87 (361)
T ss_dssp EECCSSCCSSCCSSCC--TTCSEEECCSSC--CCEECT---TSSSSCCTTCCEEECC--------SSCCCEECTTTTTTC
T ss_pred EEeCCCCcCccCccCC--CCCCEEECCCCC--CCccCh---hhhhhcccccCEEECC--------CCcCCccChhhccCC
Confidence 4444444444443322 234445555432 222222 3333 44555555555 44444443 234445
Q ss_pred cccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCcc-ccccccccccceEEecCccccccccc
Q 037953 155 IHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRF-PQGIGKLINLRHLIFTEDLLEYMPKG 218 (625)
Q Consensus 155 ~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~~L~l~~~~l~~lp~~ 218 (625)
++|++|+| .+ +..+|. .+.++++|++|+|++|. +..+ |..+.++++|++|++++|.++.+|..
T Consensus 88 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 154 (361)
T 2xot_A 88 PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQNQISRFPVE 154 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCSCCGG
T ss_pred CCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCCcCCeeCHH
Confidence 55555555 22 444432 24445555555555554 4333 22344455555555544444444433
No 122
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.30 E-value=7.8e-13 Score=117.99 Aligned_cols=122 Identities=21% Similarity=0.151 Sum_probs=105.8
Q ss_pred CCceEEEEEEcCCCC--cchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhh-h
Q 037953 71 PEKLRHLMLVLGYEA--PSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNE-I 147 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~--~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~-l 147 (625)
++++++|++++|.+. .+|..+..+++|++|++++|. +... ..++.+++|++|+++ +|.+.. +
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~-----~~~~~l~~L~~L~Ls--------~n~i~~~~ 80 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG--LTSI-----ANLPKLNKLKKLELS--------DNRVSGGL 80 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC--CCCC-----TTCCCCTTCCEEECC--------SSCCCSCT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC--CCCc-----hhhhcCCCCCEEECC--------CCcccchH
Confidence 578999999999986 788888999999999999976 2332 347899999999999 888776 8
Q ss_pred hcccccccccceecC-CC-CCCCc--hhhcCCCCCceEeecCCCCCCcccc----ccccccccceEEec
Q 037953 148 LNGVEKLIHLRYLKL-NL-VGDLP--EKCCELLNLQTLELENSSHFKRFPQ----GIGKLINLRHLIFT 208 (625)
Q Consensus 148 p~~~~~L~~L~~L~L-~~-l~~lP--~~i~~L~~L~~L~L~~~~~l~~lp~----~l~~L~~L~~L~l~ 208 (625)
|..++.+++|++|++ ++ +..+| ..++.+++|++|++++|. +..+|. .++.+++|++|+++
T Consensus 81 ~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 81 EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 888888999999999 44 88876 789999999999999998 888876 58999999999874
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.28 E-value=2.2e-12 Score=133.14 Aligned_cols=141 Identities=23% Similarity=0.228 Sum_probs=112.1
Q ss_pred CCCceEEEEEEcCCCCcchhh-hc-cCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhh
Q 037953 70 CPEKLRHLMLVLGYEAPSLVS-IF-NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI 147 (625)
Q Consensus 70 ~~~~lr~L~l~~~~~~~~~~~-~~-~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l 147 (625)
.+..++.|++++|.+..++.. +. ++++|++|+|++|. +....| ..|.++++|++|+|+ +|.+..+
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~--i~~i~~---~~~~~l~~L~~L~Ls--------~N~l~~~ 103 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH--LNFISS---EAFVPVPNLRYLDLS--------SNHLHTL 103 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC--CCEECT---TTTTTCTTCCEEECC--------SSCCCEE
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc--CCccCh---hhccCCCCCCEEECC--------CCcCCcC
Confidence 466788999999999777654 44 88999999999965 455556 778999999999999 8888877
Q ss_pred hc-ccccccccceecC-CC-CCCC-chhhcCCCCCceEeecCCCCCCcccccc----ccccccceEEecCccccccccc-
Q 037953 148 LN-GVEKLIHLRYLKL-NL-VGDL-PEKCCELLNLQTLELENSSHFKRFPQGI----GKLINLRHLIFTEDLLEYMPKG- 218 (625)
Q Consensus 148 p~-~~~~L~~L~~L~L-~~-l~~l-P~~i~~L~~L~~L~L~~~~~l~~lp~~l----~~L~~L~~L~l~~~~l~~lp~~- 218 (625)
|. .|..+++|++|+| ++ +..+ |..+.++++|++|+|++|. +..+|..+ ..+++|++|+++.|.++.+|..
T Consensus 104 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 182 (361)
T 2xot_A 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD 182 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHH
T ss_pred CHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHH
Confidence 65 5889999999999 44 7666 5678999999999999998 88888775 5789999999988888888742
Q ss_pred CCCccc
Q 037953 219 IEKLTS 224 (625)
Q Consensus 219 i~~L~~ 224 (625)
+..++.
T Consensus 183 ~~~l~~ 188 (361)
T 2xot_A 183 LQKLPA 188 (361)
T ss_dssp HHHSCH
T ss_pred hhhccH
Confidence 444444
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=2.7e-12 Score=144.44 Aligned_cols=123 Identities=19% Similarity=0.165 Sum_probs=99.3
Q ss_pred CCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceec
Q 037953 82 GYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLK 161 (625)
Q Consensus 82 ~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~ 161 (625)
|.+...+..+..++.|++|+|++|. ...+| ..+.++++|++|+|+ +|.+..+|..|+++++|++|+
T Consensus 211 n~~~~~~~~~~~l~~L~~L~Ls~n~---l~~l~---~~~~~l~~L~~L~Ls--------~N~l~~lp~~~~~l~~L~~L~ 276 (727)
T 4b8c_D 211 NRMVMPKDSKYDDQLWHALDLSNLQ---IFNIS---ANIFKYDFLTRLYLN--------GNSLTELPAEIKNLSNLRVLD 276 (727)
T ss_dssp -----------CCCCCCEEECTTSC---CSCCC---GGGGGCCSCSCCBCT--------TSCCSCCCGGGGGGTTCCEEE
T ss_pred cceecChhhhccCCCCcEEECCCCC---CCCCC---hhhcCCCCCCEEEee--------CCcCcccChhhhCCCCCCEEe
Confidence 3334446678899999999999976 33566 667799999999999 999889999999999999999
Q ss_pred C-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccc-cccC
Q 037953 162 L-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYM-PKGI 219 (625)
Q Consensus 162 L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~l-p~~i 219 (625)
| ++ +..+|..+++|++|++|+|++|. ++.+|..|++|++|++|++++|.+... |..+
T Consensus 277 Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 277 LSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp CTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CcCCcCCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 9 44 88999999999999999999998 899999999999999999988888754 4334
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.23 E-value=4.9e-12 Score=116.29 Aligned_cols=127 Identities=19% Similarity=0.092 Sum_probs=107.4
Q ss_pred CCceEEEEEEcCCCCcchhhhccCC-cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFNAI-KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN 149 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~l~-~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~ 149 (625)
+.+++.|++.+|.+..++. +..+. +|++|++++|. +... + .++.+++|++|+++ +|.+..+|.
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~--l~~~-~----~l~~l~~L~~L~Ls--------~N~l~~~~~ 81 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE--IRKL-D----GFPLLRRLKTLLVN--------NNRICRIGE 81 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC--CCEE-C----CCCCCSSCCEEECC--------SSCCCEECS
T ss_pred cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC--CCcc-c----ccccCCCCCEEECC--------CCcccccCc
Confidence 6789999999999987764 44544 99999999986 3332 3 37899999999999 999888886
Q ss_pred c-cccccccceecC-CC-CCCCch--hhcCCCCCceEeecCCCCCCccccc----cccccccceEEecCccccc
Q 037953 150 G-VEKLIHLRYLKL-NL-VGDLPE--KCCELLNLQTLELENSSHFKRFPQG----IGKLINLRHLIFTEDLLEY 214 (625)
Q Consensus 150 ~-~~~L~~L~~L~L-~~-l~~lP~--~i~~L~~L~~L~L~~~~~l~~lp~~----l~~L~~L~~L~l~~~~l~~ 214 (625)
. ++.+++|++|++ ++ +..+|. .+..+++|++|++++|. +..+|.. ++.+++|++|+++.+...+
T Consensus 82 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 5 489999999999 55 999997 89999999999999999 8888885 8999999999997665543
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.23 E-value=9.6e-11 Score=119.23 Aligned_cols=287 Identities=12% Similarity=0.087 Sum_probs=150.2
Q ss_pred cCCcceEEEeecccCCccccCchhhHHHhc-CCceeEEEeecCCCccccccchhhhhcccccccccceecC-CCCCCCc-
Q 037953 93 NAIKLRSLILFYWIPNLDAMLPVLKGIFDQ-LTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NLVGDLP- 169 (625)
Q Consensus 93 ~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~-l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~l~~lP- 169 (625)
.+.+++.|.++++- ....+ ..+.. +++|++|||+ +|.+......-+.++.++++.+ .. .+|
T Consensus 23 ~~~~l~~L~l~g~i--~~~~~----~~l~~~l~~L~~LdLs--------~n~i~~~~~~~~~~~~~~~~~~~~~--~I~~ 86 (329)
T 3sb4_A 23 EANSITHLTLTGKL--NAEDF----RHLRDEFPSLKVLDIS--------NAEIKMYSGKAGTYPNGKFYIYMAN--FVPA 86 (329)
T ss_dssp HHHHCSEEEEEEEE--CHHHH----HHHHHSCTTCCEEEEE--------EEEECCEEESSSSSGGGCCEEECTT--EECT
T ss_pred hhCceeEEEEeccc--cHHHH----HHHHHhhccCeEEecC--------cceeEEecCcccccccccccccccc--ccCH
Confidence 36788888888742 11111 33445 7889999999 8887622111222333444444 22 233
Q ss_pred hhhcC--------CCCCceEeecCCCCCCccccc-cccccccceEEecCccccccccc-CCCccccccCCceEecCCCCc
Q 037953 170 EKCCE--------LLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLSEFVVASGGGR 239 (625)
Q Consensus 170 ~~i~~--------L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~ 239 (625)
..+.+ +++|+.|+|.+ . ++.++.. |..+++|+.+++..+.+..++.. +..+.++..+..........
T Consensus 87 ~aF~~~~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~- 163 (329)
T 3sb4_A 87 YAFSNVVNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRF- 163 (329)
T ss_dssp TTTEEEETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHT-
T ss_pred HHhcccccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhc-
Confidence 23556 89999999988 5 8888765 88899999999987877777654 44444444333211000000
Q ss_pred CCCcccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhh
Q 037953 240 YGSEACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICE 319 (625)
Q Consensus 240 ~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (625)
.....-..+.++..|+..+.+... ...... +..
T Consensus 164 --~~~i~~~~f~~~~~L~~~i~~~~~---~~l~~~------------------------------------------~~~ 196 (329)
T 3sb4_A 164 --KNRWEHFAFIEGEPLETTIQVGAM---GKLEDE------------------------------------------IMK 196 (329)
T ss_dssp --STTTTTSCEEESCCCEEEEEECTT---CCHHHH------------------------------------------HHH
T ss_pred --cccccccccccccccceeEEecCC---CcHHHH------------------------------------------Hhh
Confidence 000000001111112111111111 111111 111
Q ss_pred cCCCCCCCcEEEEeccCCCcccCCchhhc-ccccccEEEEeCCCCCCCCC--CCCCCCCcceeeccccccceeeCccCCC
Q 037953 320 ALWPPPNLESLEIAGFRGRKMMLSTNWMA-SLNMLKKLRLLNCPTCEIMP--PLGQLPSLEILLIKDMTSVERVGDESLG 396 (625)
Q Consensus 320 ~l~~~~~L~~L~L~~~~~~~~~~~p~~l~-~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~ 396 (625)
.-..+.+++.+.+.+.-.... ...+. .+++|+.+++.+| .++.++ .+..+++|+.+++.++ ++.++...
T Consensus 197 ~~~~~~~~~~l~~~~~l~~~~---~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~a-- 268 (329)
T 3sb4_A 197 AGLQPRDINFLTIEGKLDNAD---FKLIRDYMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRV-- 268 (329)
T ss_dssp TTCCGGGCSEEEEEECCCHHH---HHHHHHHCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTT--
T ss_pred cccCccccceEEEeeeecHHH---HHHHHHhcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHH--
Confidence 222234445555544322211 11111 3566666666653 355555 3666777777777663 66666543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC-eeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCc-CCCCCCCCCEEE
Q 037953 397 IANGDHGAPSSSSVNNIAFPKLK-ELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPD-QLLQSSTLKTLR 473 (625)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~l~~L~-~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~ 473 (625)
+.++++|+ .+.+.+ +++.+. ...+..+++|+.|++.+ +.++.++. .+.++++|+.++
T Consensus 269 ---------------F~~~~~L~~~l~l~~--~l~~I~--~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 269 ---------------FSNCGRLAGTLELPA--SVTAIE--FGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ---------------TTTCTTCCEEEEECT--TCCEEC--TTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred ---------------hhCChhccEEEEEcc--cceEEc--hhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 45667777 777765 334333 22244678888888877 57777766 345577777765
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.23 E-value=1.4e-11 Score=134.37 Aligned_cols=139 Identities=15% Similarity=0.145 Sum_probs=102.3
Q ss_pred CcchhhhccCCcceEEE-eecccCCccccCch---hhHHHhc--CCceeEEEeecCCCccccccchhhhhcccccccccc
Q 037953 85 APSLVSIFNAIKLRSLI-LFYWIPNLDAMLPV---LKGIFDQ--LTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLR 158 (625)
Q Consensus 85 ~~~~~~~~~l~~Lr~L~-L~~~~~~~~~~lp~---~~~~~~~--l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~ 158 (625)
+..|..+..+++|+.|+ ++.+. ...++. ....+.. ...|++|+|+ +|.+..+|. |+.+++|+
T Consensus 399 ~~~~~~l~~l~~L~~L~~l~~n~---~~~L~~l~l~~n~i~~l~~~~L~~L~Ls--------~n~l~~lp~-~~~l~~L~ 466 (567)
T 1dce_A 399 LYEKETLQYFSTLKAVDPMRAAY---LDDLRSKFLLENSVLKMEYADVRVLHLA--------HKDLTVLCH-LEQLLLVT 466 (567)
T ss_dssp GGHHHHHHHHHHHHHHCGGGHHH---HHHHHHHHHHHHHHHHHHHTTCSEEECT--------TSCCSSCCC-GGGGTTCC
T ss_pred cCCHHHHHHHHhcccCcchhhcc---cchhhhhhhhcccccccCccCceEEEec--------CCCCCCCcC-ccccccCc
Confidence 45566778888888888 45432 111110 0001111 1358889998 888888886 88889999
Q ss_pred eecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccccccccccceEEecCcccccc--cccCCCccccccCCceEec
Q 037953 159 YLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYM--PKGIEKLTSLRTLSEFVVA 234 (625)
Q Consensus 159 ~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~l--p~~i~~L~~L~~L~~~~~~ 234 (625)
+|+| ++ +..+|..++++++|++|+|++|. ++.+| .++++++|++|++++|.++.+ |..++.+++|+.|++..+.
T Consensus 467 ~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 467 HLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp EEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred EeecCcccccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence 9999 44 88888889999999999999988 88888 788899999999988888887 7788888888888877665
Q ss_pred CCC
Q 037953 235 SGG 237 (625)
Q Consensus 235 ~~~ 237 (625)
...
T Consensus 545 l~~ 547 (567)
T 1dce_A 545 LCQ 547 (567)
T ss_dssp GGG
T ss_pred CCC
Confidence 544
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.22 E-value=1.9e-11 Score=114.12 Aligned_cols=122 Identities=16% Similarity=0.139 Sum_probs=91.2
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-ccccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGVEK 153 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~ 153 (625)
+.+++.++.+..+|..+. ++|++|++++|. ...+| ..|.++++|++|+|+ +|.+..++ ..|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~---i~~ip---~~~~~l~~L~~L~Ls--------~N~i~~i~~~~f~~ 76 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ---FTLVP---KELSNYKHLTLIDLS--------NNRISTLSNQSFSN 76 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSC---CCSCC---GGGGGCTTCCEEECC--------SSCCCCCCTTTTTT
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCc---CchhH---HHhhcccCCCEEECC--------CCcCCEeCHhHccC
Confidence 356666777777776543 678888888875 34566 778888888888888 88877775 45888
Q ss_pred ccccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccc
Q 037953 154 LIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLE 213 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~ 213 (625)
+++|++|+| ++ +..+|. .+..+++|++|+|++|. +..+|.. +..+++|++|+++.|.+.
T Consensus 77 l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 77 MTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGND-ISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCC-CCeeChhhhhcCccccEEEeCCCCee
Confidence 888888888 44 776654 57888888888888887 7777765 777888888888776553
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.20 E-value=1.1e-11 Score=115.73 Aligned_cols=123 Identities=20% Similarity=0.207 Sum_probs=91.5
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhH-HHhcCCceeEEEeecCCCccccccchhhh-hcccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKG-IFDQLTCLRALRIEGTDNWELEEDQTNEI-LNGVE 152 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~-~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~ 152 (625)
+.++++++.+..+|..+. ++|++|++++|. +....+ . .|+.+++|++|+|+ +|.+..+ |..|.
T Consensus 11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~--i~~~~~---~~~~~~l~~L~~L~Ls--------~N~l~~~~~~~~~ 75 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNE--LGRISS---DGLFGRLPHLVKLELK--------RNQLTGIEPNAFE 75 (192)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSCC--CCSBCC---SCSGGGCTTCCEEECC--------SSCCCCBCTTTTT
T ss_pred CEEEcCCCCcCcCccCCC--CCCCEEECCCCc--CCccCC---ccccccCCCCCEEECC--------CCCCCCcCHhHcC
Confidence 567777788888887654 388888888865 333333 2 47888888888888 8887766 66788
Q ss_pred cccccceecC-CC-CCCCch-hhcCCCCCceEeecCCCCCCcc-ccccccccccceEEecCcccc
Q 037953 153 KLIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELENSSHFKRF-PQGIGKLINLRHLIFTEDLLE 213 (625)
Q Consensus 153 ~L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~~~~~l~~l-p~~l~~L~~L~~L~l~~~~l~ 213 (625)
.+++|++|+| .+ +..+|. .+.++++|++|+|++|. +..+ |..+..+++|++|++++|.+.
T Consensus 76 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8888888888 44 666654 47788888888888888 6654 666888888888888777654
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.19 E-value=5.3e-13 Score=125.35 Aligned_cols=140 Identities=17% Similarity=0.131 Sum_probs=102.4
Q ss_pred ceEEEEEEcC--CCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc
Q 037953 73 KLRHLMLVLG--YEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG 150 (625)
Q Consensus 73 ~lr~L~l~~~--~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~ 150 (625)
.++...+.+. .+..+|..+..+++|++|++++|. ...+| .+.++++|++|+++ +|.+..+|..
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~---l~~l~----~~~~l~~L~~L~l~--------~n~l~~l~~~ 88 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN---IEKIS----SLSGMENLRILSLG--------RNLIKKIENL 88 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE---ESCCC----CHHHHTTCCEEEEE--------EEEECSCSSH
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC---Ccccc----ccccCCCCCEEECC--------CCCcccccch
Confidence 4445555443 456677788888888999888875 23344 37788888888888 8888888877
Q ss_pred cccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCcccc--ccccccccceEEecCccccccccc--------
Q 037953 151 VEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQ--GIGKLINLRHLIFTEDLLEYMPKG-------- 218 (625)
Q Consensus 151 ~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~--~l~~L~~L~~L~l~~~~l~~lp~~-------- 218 (625)
+..+++|++|++ ++ +..+| .++++++|++|++++|. +..+|. .+.++++|++|++++|.+...+..
T Consensus 89 ~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 166 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166 (198)
T ss_dssp HHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHH
T ss_pred hhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHH
Confidence 778888888888 44 77776 68888888888888888 777665 578888888888877776554222
Q ss_pred ---CCCccccccCC
Q 037953 219 ---IEKLTSLRTLS 229 (625)
Q Consensus 219 ---i~~L~~L~~L~ 229 (625)
+..+++|+.|+
T Consensus 167 ~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 167 IEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHCSSCSEEC
T ss_pred HHHHHhCCCcEEEC
Confidence 45566666665
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.16 E-value=4.2e-11 Score=111.73 Aligned_cols=121 Identities=19% Similarity=0.216 Sum_probs=99.8
Q ss_pred eEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCch-hhcC
Q 037953 98 RSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPE-KCCE 174 (625)
Q Consensus 98 r~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~-~i~~ 174 (625)
++++++++. ...+| ..+ .++|++|+|+ +|.+..+|..|.++++|++|+| ++ +..++. .+.+
T Consensus 13 ~~l~~~~~~---l~~ip---~~~--~~~l~~L~L~--------~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~ 76 (193)
T 2wfh_A 13 TVVRCSNKG---LKVLP---KGI--PRDVTELYLD--------GNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN 76 (193)
T ss_dssp TEEECTTSC---CSSCC---SCC--CTTCCEEECC--------SSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CEEEcCCCC---CCcCC---CCC--CCCCCEEECC--------CCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccC
Confidence 578888765 34455 323 3689999999 9999999989999999999999 44 888864 5899
Q ss_pred CCCCceEeecCCCCCCcccc-ccccccccceEEecCccccccccc-CCCccccccCCceEecC
Q 037953 175 LLNLQTLELENSSHFKRFPQ-GIGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLSEFVVAS 235 (625)
Q Consensus 175 L~~L~~L~L~~~~~l~~lp~-~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~ 235 (625)
+++|++|+|++|. +..+|. .+..+++|++|+++.|.++.+|.. +..+++|+.|++..+..
T Consensus 77 l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 77 MTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 9999999999999 888776 489999999999999999999875 77888888887765543
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.15 E-value=6.2e-11 Score=108.91 Aligned_cols=124 Identities=23% Similarity=0.328 Sum_probs=93.2
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc-ccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG-VEK 153 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~-~~~ 153 (625)
+.+.+.++.+..+|..+. ++|++|++++|. +....+ ..|+++++|++|+++ +|.+..+|.. ++.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~--l~~~~~---~~~~~l~~L~~L~l~--------~n~l~~~~~~~~~~ 74 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNK--LQSLPH---GVFDKLTQLTKLSLS--------QNQIQSLPDGVFDK 74 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSC--CCCCCT---TTTTTCTTCSEEECC--------SSCCCCCCTTTTTT
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCc--ccEeCH---HHhcCcccccEEECC--------CCcceEeChhHccC
Confidence 456677777777776543 788899988865 445555 667888899999998 8887777654 678
Q ss_pred ccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccc
Q 037953 154 LIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEY 214 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~ 214 (625)
+++|++|++ ++ +..+|.. +.++++|++|++++|. ++.+|.. +..+++|++|+++.|.+..
T Consensus 75 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 75 LTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccCEEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCCeec
Confidence 888888888 44 7777654 5788888888888887 7777776 4778888888887776544
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.14 E-value=3.4e-11 Score=112.29 Aligned_cols=123 Identities=19% Similarity=0.199 Sum_probs=99.7
Q ss_pred eEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc--cccccccceecC--CCCCCC-chhh
Q 037953 98 RSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG--VEKLIHLRYLKL--NLVGDL-PEKC 172 (625)
Q Consensus 98 r~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~--~~~L~~L~~L~L--~~l~~l-P~~i 172 (625)
++++++++. ...+| ..+. .+|++|+++ +|.+..++.. |+.+++|++|+| |.+..+ |..+
T Consensus 11 ~~l~~s~~~---l~~ip---~~~~--~~l~~L~l~--------~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 74 (192)
T 1w8a_A 11 TTVDCTGRG---LKEIP---RDIP--LHTTELLLN--------DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74 (192)
T ss_dssp TEEECTTSC---CSSCC---SCCC--TTCSEEECC--------SCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTT
T ss_pred CEEEcCCCC---cCcCc---cCCC--CCCCEEECC--------CCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHc
Confidence 788998875 35555 4332 389999999 9998888753 899999999999 447666 7789
Q ss_pred cCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccc-cccCCCccccccCCceEecCCC
Q 037953 173 CELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYM-PKGIEKLTSLRTLSEFVVASGG 237 (625)
Q Consensus 173 ~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~~~~~~~~~ 237 (625)
.++++|++|+|++|. +..+|.. +..+++|++|++++|.++.+ |..++.+++|++|++..+....
T Consensus 75 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 75 EGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp TTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 999999999999999 8877665 89999999999988888876 5678889999988876655443
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.11 E-value=6.7e-11 Score=120.35 Aligned_cols=282 Identities=11% Similarity=0.011 Sum_probs=164.9
Q ss_pred CCceEEEEEEcCCCCcchhhhcc-CCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-
Q 037953 71 PEKLRHLMLVLGYEAPSLVSIFN-AIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL- 148 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~~~~~~-l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp- 148 (625)
..++++|.+.++-...-...+.. +++|++|+|++|........+ +.++.++.+.+. .+. +|
T Consensus 24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~------~~~~~~~~~~~~--------~~~---I~~ 86 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKA------GTYPNGKFYIYM--------ANF---VPA 86 (329)
T ss_dssp HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESS------SSSGGGCCEEEC--------TTE---ECT
T ss_pred hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcc------cccccccccccc--------ccc---cCH
Confidence 45788999987532222234444 789999999998622112212 223335666666 553 43
Q ss_pred ccccc--------ccccceecC-CCCCCCch-hhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcc----cc
Q 037953 149 NGVEK--------LIHLRYLKL-NLVGDLPE-KCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDL----LE 213 (625)
Q Consensus 149 ~~~~~--------L~~L~~L~L-~~l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~----l~ 213 (625)
..|.+ +++|+.|+| ..+..+++ .+.++++|+.|++++|. +..++.. |..+.++..+....+. ..
T Consensus 87 ~aF~~~~~~~~~g~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~ 165 (329)
T 3sb4_A 87 YAFSNVVNGVTKGKQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDAYRFKN 165 (329)
T ss_dssp TTTEEEETTEEEECTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHHHHTST
T ss_pred HHhcccccccccccCCCcEEECCccccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhhhhccc
Confidence 34777 999999999 66877875 48899999999999998 7777665 7777777777664421 11
Q ss_pred ccc-ccCCCccccccCCceEecCCCCcCCCcccC-hhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEE
Q 037953 214 YMP-KGIEKLTSLRTLSEFVVASGGGRYGSEACK-LEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILR 291 (625)
Q Consensus 214 ~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~-l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 291 (625)
.+. ..+..+.+|+.. ....... ..+.. ........++. .+.+.+.- . ..........+++|+.+++.
T Consensus 166 ~i~~~~f~~~~~L~~~--i~~~~~~----~l~~~~~~~~~~~~~~~-~l~~~~~l--~--~~~~~~l~~~~~~L~~l~L~ 234 (329)
T 3sb4_A 166 RWEHFAFIEGEPLETT--IQVGAMG----KLEDEIMKAGLQPRDIN-FLTIEGKL--D--NADFKLIRDYMPNLVSLDIS 234 (329)
T ss_dssp TTTTSCEEESCCCEEE--EEECTTC----CHHHHHHHTTCCGGGCS-EEEEEECC--C--HHHHHHHHHHCTTCCEEECT
T ss_pred ccccccccccccccee--EEecCCC----cHHHHHhhcccCccccc-eEEEeeee--c--HHHHHHHHHhcCCCeEEECC
Confidence 111 112233333310 0011000 00000 00111223333 44444321 1 11111112247889999988
Q ss_pred EecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhccccccc-EEEEeCCCCCCCCC--
Q 037953 292 FKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNMLK-KLRLLNCPTCEIMP-- 368 (625)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~-~L~L~~c~~l~~l~-- 368 (625)
.|.++ .--...+..+.+|+.+++.++ ...+. +..+.++++|+ .+.+.+ .++.++
T Consensus 235 ~n~i~------------------~I~~~aF~~~~~L~~l~l~~n-i~~I~--~~aF~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 235 KTNAT------------------TIPDFTFAQKKYLLKIKLPHN-LKTIG--QRVFSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp TBCCC------------------EECTTTTTTCTTCCEEECCTT-CCEEC--TTTTTTCTTCCEEEEECT--TCCEECTT
T ss_pred CCCcc------------------eecHhhhhCCCCCCEEECCcc-cceeh--HHHhhCChhccEEEEEcc--cceEEchh
Confidence 66421 111235777889999999876 33331 55677889999 999986 566665
Q ss_pred CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeee
Q 037953 369 PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELE 422 (625)
Q Consensus 369 ~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 422 (625)
.+.++++|+.+++..+. ++.++... +.++++|+.++
T Consensus 292 aF~~c~~L~~l~l~~n~-i~~I~~~a-----------------F~~~~~L~~ly 327 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDK-ITTLGDEL-----------------FGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTEEEEEECSSC-CCEECTTT-----------------TCTTCCCCEEE
T ss_pred hhhCCccCCEEEeCCCc-cCccchhh-----------------hcCCcchhhhc
Confidence 48889999999987644 77777643 45667777765
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.05 E-value=2.6e-12 Score=120.58 Aligned_cols=105 Identities=19% Similarity=0.256 Sum_probs=88.5
Q ss_pred HHHhcCCceeEEEeecCCCccccccchhhhhcccccccccceecC-CC-CCCCchhhcCCCCCceEeecCCCCCCccccc
Q 037953 118 GIFDQLTCLRALRIEGTDNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSSHFKRFPQG 195 (625)
Q Consensus 118 ~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~~l~~lp~~ 195 (625)
..+..+++|++|+++ +|.+..+| .+.++++|++|++ ++ +..+|..+..+++|++|++++|. ++.+| .
T Consensus 42 ~~~~~l~~L~~L~ls--------~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~ 110 (198)
T 1ds9_A 42 ATLSTLKACKHLALS--------TNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-G 110 (198)
T ss_dssp HHHHHTTTCSEEECS--------EEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-H
T ss_pred HHHhcCCCCCEEECC--------CCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-c
Confidence 589999999999999 88888888 8999999999999 44 88999888888999999999998 88887 6
Q ss_pred cccccccceEEecCcccccccc--cCCCccccccCCceEe
Q 037953 196 IGKLINLRHLIFTEDLLEYMPK--GIEKLTSLRTLSEFVV 233 (625)
Q Consensus 196 l~~L~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~~~~~ 233 (625)
++++++|++|+++.|.++.+|. .+..+++|++|++..+
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC
Confidence 8899999999998888887664 4666777777665443
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.02 E-value=6.4e-10 Score=102.08 Aligned_cols=123 Identities=23% Similarity=0.332 Sum_probs=99.2
Q ss_pred ceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc-cccccccceecC-CC-CCCCchh-h
Q 037953 97 LRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG-VEKLIHLRYLKL-NL-VGDLPEK-C 172 (625)
Q Consensus 97 Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~-~~~L~~L~~L~L-~~-l~~lP~~-i 172 (625)
.+.++++++. ...+| . .-.++|++|+++ +|.+..+|.. ++.+++|++|++ ++ +..+|.. +
T Consensus 9 ~~~l~~~~~~---l~~~p---~--~~~~~l~~L~l~--------~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 72 (177)
T 2o6r_A 9 GTEIRCNSKG---LTSVP---T--GIPSSATRLELE--------SNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF 72 (177)
T ss_dssp TTEEECCSSC---CSSCC---T--TCCTTCSEEECC--------SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTT
T ss_pred CCEEEecCCC---CccCC---C--CCCCCCcEEEeC--------CCcccEeCHHHhcCcccccEEECCCCcceEeChhHc
Confidence 4678888765 44455 2 334799999999 8888877654 789999999999 44 8888765 6
Q ss_pred cCCCCCceEeecCCCCCCccccc-cccccccceEEecCccccccccc-CCCccccccCCceEecCC
Q 037953 173 CELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLSEFVVASG 236 (625)
Q Consensus 173 ~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~ 236 (625)
.++++|++|++++|. ++.+|.. +.++++|++|+++.|.++.+|.. +..+++|++|++..+...
T Consensus 73 ~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 73 DKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCCccCEEECCCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 899999999999998 8888776 68999999999999999999876 477888888887655443
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.00 E-value=3.1e-10 Score=103.82 Aligned_cols=76 Identities=20% Similarity=0.391 Sum_probs=38.7
Q ss_pred ccchhhh-hcccccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccc
Q 037953 141 EDQTNEI-LNGVEKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYM 215 (625)
Q Consensus 141 ~~~l~~l-p~~~~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~l 215 (625)
+|.+..+ |..|+++++|++|+| ++ +..+|.. +.++++|++|+|++|. +..+|.. +.++++|++|+++.|.+...
T Consensus 42 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 42 NNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEEeCCCCcccc
Confidence 4444444 333445555555555 22 4444443 3455555555555555 5555544 55555566666655555444
Q ss_pred cc
Q 037953 216 PK 217 (625)
Q Consensus 216 p~ 217 (625)
+.
T Consensus 121 ~~ 122 (174)
T 2r9u_A 121 CR 122 (174)
T ss_dssp BG
T ss_pred cc
Confidence 43
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.97 E-value=3.6e-10 Score=103.43 Aligned_cols=109 Identities=23% Similarity=0.228 Sum_probs=93.1
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc-ccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG-VEK 153 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~-~~~ 153 (625)
+.++++++.+..+|..+. ++|++|++++|. +....| ..|.++++|++|+|+ +|.+..+|.. |.+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~--l~~~~~---~~~~~l~~L~~L~Ls--------~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ--ITKLEP---GVFDHLVNLQQLYFN--------SNKLTAIPTGVFDK 79 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSC--CCCCCT---TTTTTCTTCCEEECC--------SSCCCCCCTTTTTT
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCC--ccccCH---HHhcCCcCCCEEECC--------CCCCCccChhHhCC
Confidence 578888899999998764 899999999975 566667 889999999999999 9999999865 689
Q ss_pred ccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccccccc
Q 037953 154 LIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQGIGKL 199 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~l~~L 199 (625)
+++|++|+| ++ +..+|.. +.++++|++|+|++|. +...|..+..+
T Consensus 80 l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~~~~~l 127 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECRDIMYL 127 (174)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBGGGHHH
T ss_pred cchhhEEECCCCccceeCHHHhccccCCCEEEeCCCC-cccccccHHHH
Confidence 999999999 54 9999876 8999999999999998 77776655444
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.91 E-value=1.7e-09 Score=98.51 Aligned_cols=81 Identities=25% Similarity=0.406 Sum_probs=41.4
Q ss_pred CceeEEEeecCCCccccccchhhh-hcccccccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCccccc-ccc
Q 037953 124 TCLRALRIEGTDNWELEEDQTNEI-LNGVEKLIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQG-IGK 198 (625)
Q Consensus 124 ~~Lr~L~Ls~c~~~~~~~~~l~~l-p~~~~~L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~~-l~~ 198 (625)
++|++|+|+ +|.+..+ |..|.++++|++|+| ++ +..+|.. +.++++|++|+|++|. +..+|.. +.+
T Consensus 30 ~~l~~L~L~--------~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~ 100 (170)
T 3g39_A 30 TTTQVLYLY--------DNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDN 100 (170)
T ss_dssp TTCSEEECC--------SSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTT
T ss_pred CCCcEEEcC--------CCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcC
Confidence 445555555 4544444 333455555555555 22 4444443 3455555555555555 5555543 555
Q ss_pred ccccceEEecCcccc
Q 037953 199 LINLRHLIFTEDLLE 213 (625)
Q Consensus 199 L~~L~~L~l~~~~l~ 213 (625)
+++|++|+++.|.+.
T Consensus 101 l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 101 LKSLTHIWLLNNPWD 115 (170)
T ss_dssp CTTCCEEECCSSCBC
T ss_pred CCCCCEEEeCCCCCC
Confidence 555555555555443
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.88 E-value=1e-09 Score=99.94 Aligned_cols=104 Identities=23% Similarity=0.270 Sum_probs=88.1
Q ss_pred EEEEEEcCCCCcchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhcc-ccc
Q 037953 75 RHLMLVLGYEAPSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILNG-VEK 153 (625)
Q Consensus 75 r~L~l~~~~~~~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~~-~~~ 153 (625)
+.++++++.+..+|..+. ++|++|++++|. +....| ..|.++++|++|+|+ +|.+..+|.. |..
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~--i~~~~~---~~~~~l~~L~~L~Ls--------~N~l~~l~~~~f~~ 76 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQ--ITKLEP---GVFDRLTQLTRLDLD--------NNQLTVLPAGVFDK 76 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSC--CCCCCT---TTTTTCTTCSEEECC--------SSCCCCCCTTTTTT
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCc--CCccCh---hhhcCcccCCEEECC--------CCCcCccChhhccC
Confidence 578888899988987664 899999999975 556667 889999999999999 9998888765 789
Q ss_pred ccccceecC-CC-CCCCchh-hcCCCCCceEeecCCCCCCcccc
Q 037953 154 LIHLRYLKL-NL-VGDLPEK-CCELLNLQTLELENSSHFKRFPQ 194 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~ 194 (625)
+++|++|+| ++ +..+|.. +.++++|++|+|++|. +...+.
T Consensus 77 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-~~c~c~ 119 (170)
T 3g39_A 77 LTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP-WDCACS 119 (170)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-BCTTBG
T ss_pred CCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC-CCCCch
Confidence 999999999 54 8888875 8899999999999998 654443
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.76 E-value=2.7e-07 Score=96.02 Aligned_cols=109 Identities=11% Similarity=0.099 Sum_probs=61.1
Q ss_pred chhhcccccccEEEEeCCCCC----CCCC--CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCC
Q 037953 344 TNWMASLNMLKKLRLLNCPTC----EIMP--PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPK 417 (625)
Q Consensus 344 p~~l~~l~~L~~L~L~~c~~l----~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 417 (625)
+..+..+++|+.+.+.++... ..++ .+..+++|+.+.|.+ .++.++... ..++++
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~a-----------------F~~c~~ 324 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGL-----------------LGGNRK 324 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTT-----------------TTTCCS
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhh-----------------hcCCCC
Confidence 445556667777777653321 1233 366677777777763 366665543 456677
Q ss_pred CCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCcC-CCCC-CCCCEEEEecC
Q 037953 418 LKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPDQ-LLQS-STLKTLRINRC 477 (625)
Q Consensus 418 L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l-~~L~~L~l~~c 477 (625)
|+.+.+.. +++.+. ...+..+ +|+.+.+.++ .+..++.. +..+ .+++.|.+-..
T Consensus 325 L~~l~lp~--~l~~I~--~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 325 VTQLTIPA--NVTQIN--FSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CCEEEECT--TCCEEC--TTSSSSS-CCCEEEECCS-SCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred ccEEEECc--cccEEc--HHhCCCC-CCCEEEEcCC-CCcccccccccCCCCCccEEEeCHH
Confidence 77777753 233332 2223456 7888888774 45555433 2233 35666666554
No 142
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.69 E-value=1.3e-07 Score=98.49 Aligned_cols=244 Identities=11% Similarity=0.108 Sum_probs=144.3
Q ss_pred CCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-ccccccccceecC-CCCCCCc-h
Q 037953 94 AIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHLRYLKL-NLVGDLP-E 170 (625)
Q Consensus 94 l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L~~L~L-~~l~~lP-~ 170 (625)
+..++.+.+... +....+ .+|.++ +|+.+.+. .+ +..|+. +|.+ .+|+.+.+ +.+..++ .
T Consensus 112 ~~~l~~i~ip~~---i~~I~~---~aF~~~-~L~~i~l~--------~~-i~~I~~~aF~~-~~L~~i~lp~~l~~I~~~ 174 (401)
T 4fdw_A 112 LKGYNEIILPNS---VKSIPK---DAFRNS-QIAKVVLN--------EG-LKSIGDMAFFN-STVQEIVFPSTLEQLKED 174 (401)
T ss_dssp CSSCSEEECCTT---CCEECT---TTTTTC-CCSEEECC--------TT-CCEECTTTTTT-CCCCEEECCTTCCEECSS
T ss_pred cCCccEEEECCc---cCEehH---hhcccC-CccEEEeC--------CC-ccEECHHhcCC-CCceEEEeCCCccEehHH
Confidence 456666666553 233333 667775 68888887 44 556643 4666 46888888 6666665 4
Q ss_pred hhcCCCCCceEeecCCCCCCccccccccccccceEEecCccccccccc-CCCccccccCCceEecCCCCcCCCcccChhc
Q 037953 171 KCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIFTEDLLEYMPKG-IEKLTSLRTLSEFVVASGGGRYGSEACKLEG 249 (625)
Q Consensus 171 ~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~ 249 (625)
.+.++.+|+.+++.+|. +..+|.......+|+.+.+..+ ++.++.. +.++++|+.+.+... ... -.-..
T Consensus 175 aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~-------I~~~a 244 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VST-------IGQEA 244 (401)
T ss_dssp TTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCE-------ECTTT
T ss_pred HhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccC-------ccccc
Confidence 57788889999988887 8888877544688888888533 6666543 667777777664311 000 00111
Q ss_pred cccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcE
Q 037953 250 LRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLES 329 (625)
Q Consensus 250 l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~ 329 (625)
+.+ ..|+ .+.+.. + +.......+.++++|+.+.+..+... ... ...--...+..|++|+.
T Consensus 245 F~~-~~L~-~i~lp~--~---i~~I~~~aF~~c~~L~~l~l~~~~~~-----~~~--------~~~I~~~aF~~c~~L~~ 304 (401)
T 4fdw_A 245 FRE-SGIT-TVKLPN--G---VTNIASRAFYYCPELAEVTTYGSTFN-----DDP--------EAMIHPYCLEGCPKLAR 304 (401)
T ss_dssp TTT-CCCS-EEEEET--T---CCEECTTTTTTCTTCCEEEEESSCCC-----CCT--------TCEECTTTTTTCTTCCE
T ss_pred ccc-CCcc-EEEeCC--C---ccEEChhHhhCCCCCCEEEeCCcccc-----CCc--------ccEECHHHhhCCccCCe
Confidence 122 2343 454432 1 11222345778888888888765310 000 00011234667788888
Q ss_pred EEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC--CCCCCCCcceeeccccccceeeC
Q 037953 330 LEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP--PLGQLPSLEILLIKDMTSVERVG 391 (625)
Q Consensus 330 L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~ 391 (625)
+.+.+. ...+. ...+.++++|+.+.|.. .+..++ .+..+ +|+.+.+.++. ...++
T Consensus 305 l~l~~~-i~~I~--~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n~-~~~l~ 361 (401)
T 4fdw_A 305 FEIPES-IRILG--QGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGTT-PPQVF 361 (401)
T ss_dssp ECCCTT-CCEEC--TTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCSS-CCBCC
T ss_pred EEeCCc-eEEEh--hhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCCC-Ccccc
Confidence 888743 33321 45566788888888854 355554 36667 88888887754 33343
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.68 E-value=1.4e-07 Score=98.16 Aligned_cols=304 Identities=12% Similarity=0.058 Sum_probs=163.7
Q ss_pred hhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-cccccccccceecC-CCCC
Q 037953 89 VSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGVEKLIHLRYLKL-NLVG 166 (625)
Q Consensus 89 ~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~L~~L~~L~L-~~l~ 166 (625)
.+|.+|.+|+++.+..+ +...-. .+|.+|++|+.+++. .+ +..++ .+|.++.+|+.+.+ ..+.
T Consensus 65 ~AF~~c~~L~~i~lp~~---i~~I~~---~aF~~c~~L~~i~lp--------~~-l~~I~~~aF~~c~~L~~i~~p~~l~ 129 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST---VREIGE---FAFENCSKLEIINIP--------DS-VKMIGRCTFSGCYALKSILLPLMLK 129 (394)
T ss_dssp TTTTTCTTEEEEECCTT---CCEECT---TTTTTCTTCCEECCC--------TT-CCEECTTTTTTCTTCCCCCCCTTCC
T ss_pred HHhhCCCCceEEEeCCC---ccCcch---hHhhCCCCCcEEEeC--------CC-ceEccchhhcccccchhhcccCcee
Confidence 36788999999998753 233333 679999999999997 43 44553 35888888888887 5555
Q ss_pred CCch-hhcCCCCCceEeecCCCCCCccc-cccccccccceEEecCcccccccc-cCCCccccccCCceEecCCCCcCCCc
Q 037953 167 DLPE-KCCELLNLQTLELENSSHFKRFP-QGIGKLINLRHLIFTEDLLEYMPK-GIEKLTSLRTLSEFVVASGGGRYGSE 243 (625)
Q Consensus 167 ~lP~-~i~~L~~L~~L~L~~~~~l~~lp-~~l~~L~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~~~~~~~~~~~~~~~ 243 (625)
.+.. .+.++..++...... +..+. ..|.++++|+.+.+..+ +..++. .+..+.+|+.+.+... ... -.
T Consensus 130 ~i~~~aF~~~~~~~~~~~~~---~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~----I~ 200 (394)
T 4fs7_A 130 SIGVEAFKGCDFKEITIPEG---VTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKI----IR 200 (394)
T ss_dssp EECTTTTTTCCCSEEECCTT---CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCE----EC
T ss_pred eecceeeecccccccccCcc---ccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceE----eC
Confidence 4443 244443333332222 22332 23677788888887433 234443 3566677776654211 000 00
Q ss_pred ccChhccccccccccceEEeccCCCCChhHHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCC
Q 037953 244 ACKLEGLRHLNHLRGSLKVRGLGNVADVDEVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWP 323 (625)
Q Consensus 244 ~~~l~~l~~L~~L~~~L~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 323 (625)
......+..|. .+.+... ... ..........|+.+.+.... . .--...+..
T Consensus 201 ~~~F~~~~~L~----~i~~~~~--~~~----i~~~~~~~~~l~~i~ip~~~---------~----------~i~~~~f~~ 251 (394)
T 4fs7_A 201 DYCFAECILLE----NMEFPNS--LYY----LGDFALSKTGVKNIIIPDSF---------T----------ELGKSVFYG 251 (394)
T ss_dssp TTTTTTCTTCC----BCCCCTT--CCE----ECTTTTTTCCCCEEEECTTC---------C----------EECSSTTTT
T ss_pred chhhccccccc----eeecCCC--ceE----eehhhcccCCCceEEECCCc---------e----------ecccccccc
Confidence 11222222222 2221110 000 01112334566666654220 0 001123455
Q ss_pred CCCCcEEEEeccCCCcccCCchhhcccccccEEEEeCCCCCCCCC--CCCCCCCcceeeccccccceeeCccCCCCCCCC
Q 037953 324 PPNLESLEIAGFRGRKMMLSTNWMASLNMLKKLRLLNCPTCEIMP--PLGQLPSLEILLIKDMTSVERVGDESLGIANGD 401 (625)
Q Consensus 324 ~~~L~~L~L~~~~~~~~~~~p~~l~~l~~L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~ 401 (625)
+..|+.+.+..+..... ...+..+..++.+...... ++ .+..+.+|+.+.+.+ .++.++...
T Consensus 252 ~~~l~~~~~~~~~~~i~---~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~--~i~~I~~~a------- 315 (394)
T 4fs7_A 252 CTDLESISIQNNKLRIG---GSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLD--SVKFIGEEA------- 315 (394)
T ss_dssp CSSCCEEEECCTTCEEC---SCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECT--TCCEECTTT-------
T ss_pred cccceeEEcCCCcceee---ccccccccccceeccCcee----ecccccccccccccccccc--ccceechhh-------
Confidence 67777777765433322 4455566777777665421 22 355677788777754 366665432
Q ss_pred CCCCCCCCCCCCCCCCCCeeeccCcccccccccCCCCcccCCCccEEEEecCCCCCcCCc-CCCCCCCCCEEEEecC
Q 037953 402 HGAPSSSSVNNIAFPKLKELEFSGLQEWEDWDFRKEDITIMPQINSLSIYGCHKLKSLPD-QLLQSSTLKTLRINRC 477 (625)
Q Consensus 402 ~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~c 477 (625)
...+.+|+.+.+.+ +++.+. ...+..+++|+.+.+.. .++.|+. .+..+++|+.+++...
T Consensus 316 ----------F~~c~~L~~i~lp~--~v~~I~--~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 316 ----------FESCTSLVSIDLPY--LVEEIG--KRSFRGCTSLSNINFPL--SLRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ----------TTTCTTCCEECCCT--TCCEEC--TTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTCCEEEEEGG
T ss_pred ----------hcCCCCCCEEEeCC--cccEEh--HHhccCCCCCCEEEECc--cccEehHHHhhCCCCCCEEEECCC
Confidence 45667777777753 233332 22244677888887765 3666654 3455778888887654
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.58 E-value=4.1e-08 Score=100.41 Aligned_cols=91 Identities=16% Similarity=0.157 Sum_probs=53.5
Q ss_pred cccCchhhHHHhcCCceeEEEeecCCCccccc-cchhhhh-cccccccccceecC-CC-CCCCch-hhcCCCCCceEeec
Q 037953 110 DAMLPVLKGIFDQLTCLRALRIEGTDNWELEE-DQTNEIL-NGVEKLIHLRYLKL-NL-VGDLPE-KCCELLNLQTLELE 184 (625)
Q Consensus 110 ~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~-~~l~~lp-~~~~~L~~L~~L~L-~~-l~~lP~-~i~~L~~L~~L~L~ 184 (625)
...+| . +..+++|++|+|+ + |.+..+| ..|+.+++|++|+| ++ +..+|. .+.+|++|++|+|+
T Consensus 21 l~~ip---~-l~~~~~L~~L~l~--------~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 21 LDSLH---H-LPGAENLTELYIE--------NQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CTTTT---T-SCSCSCCSEEECC--------SCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CCccC---C-CCCCCCeeEEEcc--------CCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 33455 5 6666667777776 5 5566554 34666666666666 33 555443 45666666666666
Q ss_pred CCCCCCccccccccccccceEEecCcccc
Q 037953 185 NSSHFKRFPQGIGKLINLRHLIFTEDLLE 213 (625)
Q Consensus 185 ~~~~l~~lp~~l~~L~~L~~L~l~~~~l~ 213 (625)
+|. +..+|..+.....|++|++.+|.+.
T Consensus 89 ~N~-l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNA-LESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SSC-CSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCc-cceeCHHHcccCCceEEEeeCCCcc
Confidence 666 6666655333333666666555544
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.51 E-value=1.2e-07 Score=97.03 Aligned_cols=97 Identities=21% Similarity=0.070 Sum_probs=57.1
Q ss_pred EEEEcC-CCCcchhhhccCCcceEEEeec-ccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-ccccc
Q 037953 77 LMLVLG-YEAPSLVSIFNAIKLRSLILFY-WIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGVEK 153 (625)
Q Consensus 77 L~l~~~-~~~~~~~~~~~l~~Lr~L~L~~-~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~ 153 (625)
+++.++ .+..+|. +..+++|++|+|++ |. +....| ..|.++++|++|+|+ +|.+..+| ..|++
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~--l~~~~~---~~~~~l~~L~~L~l~--------~N~l~~~~~~~~~~ 78 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQH--LQHLEL---RDLRGLGELRNLTIV--------KSGLRFVAPDAFHF 78 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSS--CCEECG---GGSCSCCCCSEEECC--------SSCCCEECTTGGGS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCC--CCCcCh---hHhccccCCCEEECC--------CCccceeCHHHhcC
Confidence 344554 5566666 66666666666664 43 334444 556666666666666 66655553 34666
Q ss_pred ccccceecC-CC-CCCCchhhcCCCCCceEeecCCC
Q 037953 154 LIHLRYLKL-NL-VGDLPEKCCELLNLQTLELENSS 187 (625)
Q Consensus 154 L~~L~~L~L-~~-l~~lP~~i~~L~~L~~L~L~~~~ 187 (625)
+++|++|+| ++ +..+|..+.....|++|+|.+|.
T Consensus 79 l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 79 TPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp CSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred CcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCC
Confidence 666666666 33 66666554443346666666665
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.50 E-value=8.1e-07 Score=92.43 Aligned_cols=321 Identities=10% Similarity=0.034 Sum_probs=173.5
Q ss_pred HHHhcCCceeEEEeecCCCccccccchhhhh-cccccccccceecC-CCCCCCch-hhcCCCCCceEeecCCCCCCcccc
Q 037953 118 GIFDQLTCLRALRIEGTDNWELEEDQTNEIL-NGVEKLIHLRYLKL-NLVGDLPE-KCCELLNLQTLELENSSHFKRFPQ 194 (625)
Q Consensus 118 ~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~~~~~L~~L~~L~L-~~l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~ 194 (625)
.+|.+|++|+.+.+. .+ +..|+ .+|.++.+|+.+++ +++..++. .+.++.+|+.+.+..+ +..+..
T Consensus 65 ~AF~~c~~L~~i~lp--------~~-i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~c~~L~~i~~p~~--l~~i~~ 133 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIP--------ST-VREIGEFAFENCSKLEIINIPDSVKMIGRCTFSGCYALKSILLPLM--LKSIGV 133 (394)
T ss_dssp TTTTTCTTEEEEECC--------TT-CCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCCCCCCTT--CCEECT
T ss_pred HHhhCCCCceEEEeC--------CC-ccCcchhHhhCCCCCcEEEeCCCceEccchhhcccccchhhcccCc--eeeecc
Confidence 679999999999997 43 56664 45889999999999 66666654 4677888888776654 444443
Q ss_pred c-cccccccceEEecCccccccc-ccCCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEeccCCCCChh
Q 037953 195 G-IGKLINLRHLIFTEDLLEYMP-KGIEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGLGNVADVD 272 (625)
Q Consensus 195 ~-l~~L~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~~~~~~~~ 272 (625)
. +.++..++..... ....+. ..+.++++|+.+.+.. .. ....-..+.++..|+ .+.+.. ++.
T Consensus 134 ~aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~---~~-----~~I~~~~F~~c~~L~-~i~l~~--~~~--- 197 (394)
T 4fs7_A 134 EAFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPD---SM-----ETLHNGLFSGCGKLK-SIKLPR--NLK--- 197 (394)
T ss_dssp TTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCT---TC-----CEECTTTTTTCTTCC-BCCCCT--TCC---
T ss_pred eeeecccccccccCc--cccccchhhhcccCCCcEEecCC---cc-----ceeccccccCCCCce-EEEcCC--Cce---
Confidence 3 4444333222221 122232 3366667776655321 10 000111122333333 333211 111
Q ss_pred HHHHhccCCCCCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhccccc
Q 037953 273 EVKNAHLEKKKNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMASLNM 352 (625)
Q Consensus 273 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~~l~~ 352 (625)
......+.++..|+.+.+..+. ..+.+.......|+.+.+.......- ...+..+.+
T Consensus 198 ~I~~~~F~~~~~L~~i~~~~~~--------------------~~i~~~~~~~~~l~~i~ip~~~~~i~---~~~f~~~~~ 254 (394)
T 4fs7_A 198 IIRDYCFAECILLENMEFPNSL--------------------YYLGDFALSKTGVKNIIIPDSFTELG---KSVFYGCTD 254 (394)
T ss_dssp EECTTTTTTCTTCCBCCCCTTC--------------------CEECTTTTTTCCCCEEEECTTCCEEC---SSTTTTCSS
T ss_pred EeCchhhccccccceeecCCCc--------------------eEeehhhcccCCCceEEECCCceecc---ccccccccc
Confidence 1112345566666665544221 01111223345777777754322211 344556777
Q ss_pred ccEEEEeCCCCCCCCC--CCCCCCCcceeeccccccceeeCccCCCCCCCCCCCCCCCCCCCCCCCCCCeeeccCccccc
Q 037953 353 LKKLRLLNCPTCEIMP--PLGQLPSLEILLIKDMTSVERVGDESLGIANGDHGAPSSSSVNNIAFPKLKELEFSGLQEWE 430 (625)
Q Consensus 353 L~~L~L~~c~~l~~l~--~l~~l~~L~~L~L~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~ 430 (625)
|+.+.+..+ ...+. .+..++.++.+..... .++... ...+.+|+.+.+.+ +++
T Consensus 255 l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~----~i~~~~-----------------F~~~~~L~~i~l~~--~i~ 309 (394)
T 4fs7_A 255 LESISIQNN--KLRIGGSLFYNCSGLKKVIYGSV----IVPEKT-----------------FYGCSSLTEVKLLD--SVK 309 (394)
T ss_dssp CCEEEECCT--TCEECSCTTTTCTTCCEEEECSS----EECTTT-----------------TTTCTTCCEEEECT--TCC
T ss_pred ceeEEcCCC--cceeeccccccccccceeccCce----eecccc-----------------cccccccccccccc--ccc
Confidence 777777653 22222 3556666766665432 133221 45677888888754 233
Q ss_pred ccccCCCCcccCCCccEEEEecCCCCCcCCcC-CCCCCCCCEEEEecCcchhhcccccccccCCCCceEEecCCCCccch
Q 037953 431 DWDFRKEDITIMPQINSLSIYGCHKLKSLPDQ-LLQSSTLKTLRINRCRVLEEHFKKDRSKISHIPDIQIYERGPGFFTL 509 (625)
Q Consensus 431 ~~~~~~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~c~~L~~~~~~~~~~l~~l~~l~~~~~~~~~~~l 509 (625)
.+. ...+..+++|+.+.+.+ .++.|+.. +.++.+|+.+.+... ++.+....+....+|..+.+......
T Consensus 310 ~I~--~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~~~~---- 379 (394)
T 4fs7_A 310 FIG--EEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPKRLEQ---- 379 (394)
T ss_dssp EEC--TTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEGGGGG----
T ss_pred eec--hhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECCCCEE----
Confidence 332 22244678899998864 47777543 456788998888644 55554344555666777766543221
Q ss_pred hhhhccCccccccc
Q 037953 510 MARLISDCLSMMNM 523 (625)
Q Consensus 510 ~~~~i~~c~~L~~l 523 (625)
......+|.+|+.+
T Consensus 380 ~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 380 YRYDFEDTTKFKWI 393 (394)
T ss_dssp GGGGBCTTCEEEEE
T ss_pred hhheecCCCCCcEE
Confidence 22346777777654
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.38 E-value=2.6e-08 Score=102.59 Aligned_cols=150 Identities=15% Similarity=0.089 Sum_probs=82.9
Q ss_pred CCceEEEEEEcCCCCcch-hh----hc-cCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccch
Q 037953 71 PEKLRHLMLVLGYEAPSL-VS----IF-NAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQT 144 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~~-~~----~~-~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l 144 (625)
.+.++.|++++|.+.... .. +. ..++|++|+|++|... ..... .....+++|++|+|+ +|.+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~-~~~~~---~l~~~L~~L~~L~Ls--------~n~l 138 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLD-PAGLR---TLLPVFLRARKLGLQ--------LNSL 138 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCC-HHHHH---HTHHHHHTEEEEECC--------SSCC
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCC-HHHHH---HHHHHHHhccHhhcC--------CCCC
Confidence 346777777777764321 12 22 2257778887776421 11122 333455677777877 5554
Q ss_pred hhh-----hccc-ccccccceecC--CCCCC-----CchhhcCCCCCceEeecCCCCCCc-----cccccccccccceEE
Q 037953 145 NEI-----LNGV-EKLIHLRYLKL--NLVGD-----LPEKCCELLNLQTLELENSSHFKR-----FPQGIGKLINLRHLI 206 (625)
Q Consensus 145 ~~l-----p~~~-~~L~~L~~L~L--~~l~~-----lP~~i~~L~~L~~L~L~~~~~l~~-----lp~~l~~L~~L~~L~ 206 (625)
+.. ...+ ...++|++|+| |.++. ++..+..+++|++|+|++|. ++. ++..+...++|++|+
T Consensus 139 ~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~ 217 (372)
T 3un9_A 139 GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELN 217 (372)
T ss_dssp CHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEE
T ss_pred CHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEE
Confidence 322 2222 23566777777 33433 44455667777777777776 553 344456667777777
Q ss_pred ecCcccccc-----cccCCCccccccCCceEe
Q 037953 207 FTEDLLEYM-----PKGIEKLTSLRTLSEFVV 233 (625)
Q Consensus 207 l~~~~l~~l-----p~~i~~L~~L~~L~~~~~ 233 (625)
+++|.++.. +..+...++|++|++..+
T Consensus 218 Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 218 VAYNGAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp CCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 766666532 222333455555555433
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.32 E-value=1.6e-07 Score=96.71 Aligned_cols=134 Identities=16% Similarity=0.125 Sum_probs=97.0
Q ss_pred CCceEEEEEEcCCCCcc--hhhhccCCcceEEEeecccCCccccCc-hhhHHH-hcCCceeEEEeecCCCccccccchhh
Q 037953 71 PEKLRHLMLVLGYEAPS--LVSIFNAIKLRSLILFYWIPNLDAMLP-VLKGIF-DQLTCLRALRIEGTDNWELEEDQTNE 146 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~~~--~~~~~~l~~Lr~L~L~~~~~~~~~~lp-~~~~~~-~~l~~Lr~L~Ls~c~~~~~~~~~l~~ 146 (625)
..+++.|++++|.+... ..-...+++|++|+|++|.. ..... .+...+ ...++|++|+|+ +|.++.
T Consensus 100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l--~~~~~~~L~~~L~~~~~~L~~L~Ls--------~n~l~~ 169 (372)
T 3un9_A 100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL--GPEACKDLRDLLLHDQCQITTLRLS--------NNPLTA 169 (372)
T ss_dssp SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC--CHHHHHHHHHHHHSTTCCCCEEECC--------SSCCHH
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC--CHHHHHHHHHHHHhcCCccceeeCC--------CCCCCh
Confidence 36899999999988432 22234567899999999862 22211 111223 356899999999 666543
Q ss_pred -----hhcccccccccceecC--CCCCC-----CchhhcCCCCCceEeecCCCCCCc-----cccccccccccceEEecC
Q 037953 147 -----ILNGVEKLIHLRYLKL--NLVGD-----LPEKCCELLNLQTLELENSSHFKR-----FPQGIGKLINLRHLIFTE 209 (625)
Q Consensus 147 -----lp~~~~~L~~L~~L~L--~~l~~-----lP~~i~~L~~L~~L~L~~~~~l~~-----lp~~l~~L~~L~~L~l~~ 209 (625)
++..+..+++|++|+| |.++. ++..+...++|++|+|++|. ++. ++..+...++|++|++++
T Consensus 170 ~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~~~l~~~L~~~~~L~~L~Ls~ 248 (372)
T 3un9_A 170 AGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAALALARAAREHPSLELLHLYF 248 (372)
T ss_dssp HHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHHHHHHHHHHHCSSCCEEECTT
T ss_pred HHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHHHHHHHHHHhCCCCCEEeccC
Confidence 5666788999999999 44543 45667888999999999998 764 444566789999999988
Q ss_pred cccccc
Q 037953 210 DLLEYM 215 (625)
Q Consensus 210 ~~l~~l 215 (625)
|.++..
T Consensus 249 N~i~~~ 254 (372)
T 3un9_A 249 NELSSE 254 (372)
T ss_dssp SSCCHH
T ss_pred CCCCHH
Confidence 887653
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.18 E-value=1.9e-05 Score=81.97 Aligned_cols=122 Identities=13% Similarity=0.156 Sum_probs=82.6
Q ss_pred hhccCC-cceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccc---hhhhh-cccccccccceecC-C
Q 037953 90 SIFNAI-KLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQ---TNEIL-NGVEKLIHLRYLKL-N 163 (625)
Q Consensus 90 ~~~~l~-~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~---l~~lp-~~~~~L~~L~~L~L-~ 163 (625)
+|.+++ .|+++.+... ....-. .+|.+|.+|+.+.+. .+. +..+. .+|..+.+|+.+.+ .
T Consensus 58 aF~~~~~~L~sI~iP~s---vt~Ig~---~AF~~C~~L~~i~~~--------~n~p~~l~~Ig~~aF~~c~~L~~i~~~~ 123 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT---VTEIGS---NAFYNCTSLKRVTIQ--------DNKPSCVKKIGRQAFMFCSELTDIPILD 123 (394)
T ss_dssp TTTTCCSCCCEEEECTT---CCEECT---TTTTTCTTCCEEEEG--------GGCCCCCCEECTTTTTTCTTCCBCGGGT
T ss_pred hccCCCCcCEEEEECCC---eeEEhH---HHhhCCccCceEeec--------CCCCCeeeEechhhchhcccceeeccCC
Confidence 566674 5899988763 233333 779999999999998 542 55664 35888899999888 6
Q ss_pred CCCCCch-hhcCCCCCceEeecCCCCCCccccc-cccccccceEEecCcccccccccCCCccccccC
Q 037953 164 LVGDLPE-KCCELLNLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDLLEYMPKGIEKLTSLRTL 228 (625)
Q Consensus 164 ~l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~l~~lp~~i~~L~~L~~L 228 (625)
.+..++. .+..+.+|+.+.+..+ +..++.. +..+.+|+.+.+..+ ++.+....-...+|+.+
T Consensus 124 ~~~~I~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i 187 (394)
T 4gt6_A 124 SVTEIDSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQI 187 (394)
T ss_dssp TCSEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEE
T ss_pred ccceehhhhhhhhcccccccccce--eeeecccceecccccccccccce-eeEeccccccccceeEE
Confidence 6666654 4678899999998754 4555544 778888998888433 44554433233445444
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.13 E-value=0.00012 Score=75.89 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=62.8
Q ss_pred ceEEEEEEcCCCCcch-hhhccCCcceEEEeecccCC-ccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhh-c
Q 037953 73 KLRHLMLVLGYEAPSL-VSIFNAIKLRSLILFYWIPN-LDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEIL-N 149 (625)
Q Consensus 73 ~lr~L~l~~~~~~~~~-~~~~~l~~Lr~L~L~~~~~~-~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp-~ 149 (625)
.++.+.+..+ ...+. .+|.+|++|+.+.+..+... ....-. .+|..+.+|+.+.+. .+ +..++ .
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~---~aF~~c~~L~~i~~~--------~~-~~~I~~~ 131 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGR---QAFMFCSELTDIPIL--------DS-VTEIDSE 131 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECT---TTTTTCTTCCBCGGG--------TT-CSEECTT
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEech---hhchhcccceeeccC--------Cc-cceehhh
Confidence 3555555432 33332 35666777777776654322 122222 556666666665554 22 33343 2
Q ss_pred ccccccccceecC-CCCCCCch-hhcCCCCCceEeecCCCCCCccccccccccccceEEe
Q 037953 150 GVEKLIHLRYLKL-NLVGDLPE-KCCELLNLQTLELENSSHFKRFPQGIGKLINLRHLIF 207 (625)
Q Consensus 150 ~~~~L~~L~~L~L-~~l~~lP~-~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~~L~~L~l 207 (625)
+|..+.+|+.+.+ ..+..++. .+..+.+|+.+.+..+ +..+........+|+.+.+
T Consensus 132 aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~i 189 (394)
T 4gt6_A 132 AFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHI 189 (394)
T ss_dssp TTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEE
T ss_pred hhhhhcccccccccceeeeecccceecccccccccccce--eeEeccccccccceeEEEE
Confidence 3666677777777 44444432 3556666777666543 4445444223345666665
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.00 E-value=1.5e-06 Score=78.19 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=43.7
Q ss_pred CCCCCCCCeeeccCcccccccccCCCCccc----CCCccEEEEecCCCCCc--CCcCCCCCCCCCEEEEecCcchhhc
Q 037953 412 NIAFPKLKELEFSGLQEWEDWDFRKEDITI----MPQINSLSIYGCHKLKS--LPDQLLQSSTLKTLRINRCRVLEEH 483 (625)
Q Consensus 412 ~~~l~~L~~L~L~~~~~l~~~~~~~~~~~~----l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~c~~L~~~ 483 (625)
+..+++|+.|+|++|..+++..+.. +.. .++|++|+|++|+++++ +. .+.++++|++|++++|+.+++.
T Consensus 81 L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp GTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCCCH
T ss_pred hcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCCch
Confidence 3456667777777666555433221 112 24688888888887765 32 2345788888888888877753
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.97 E-value=7.4e-06 Score=83.61 Aligned_cols=147 Identities=12% Similarity=-0.009 Sum_probs=97.6
Q ss_pred CCceEEEEEEcCCCC----------cchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCcccc
Q 037953 71 PEKLRHLMLVLGYEA----------PSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELE 140 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~----------~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~ 140 (625)
.++++.|.+.....+ .+...+..+|+|+.|.+++|.. ..++ . + .+++|+.|+|.
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~---l~l~---~-~-~~~~L~~L~L~-------- 201 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN---LSIG---K-K-PRPNLKSLEII-------- 201 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT---CBCC---S-C-BCTTCSEEEEE--------
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC---ceec---c-c-cCCCCcEEEEe--------
Confidence 468999998654321 3455667789999999998731 2334 3 3 38899999999
Q ss_pred ccchh-hhhcccc--cccccceecC--CC---CC-----CCchhh--cCCCCCceEeecCCCCCCc-ccccc---ccccc
Q 037953 141 EDQTN-EILNGVE--KLIHLRYLKL--NL---VG-----DLPEKC--CELLNLQTLELENSSHFKR-FPQGI---GKLIN 201 (625)
Q Consensus 141 ~~~l~-~lp~~~~--~L~~L~~L~L--~~---l~-----~lP~~i--~~L~~L~~L~L~~~~~l~~-lp~~l---~~L~~ 201 (625)
.+.+. +....++ .+++|++|+| +. .. .+...+ ..+++|++|+|++|. +.. .+..+ ..+++
T Consensus 202 ~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~ 280 (362)
T 2ra8_A 202 SGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQ 280 (362)
T ss_dssp CSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGG
T ss_pred cCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCC
Confidence 55532 2222333 7889999988 21 11 121222 357899999999998 542 22233 35889
Q ss_pred cceEEecCccccc-----ccccCCCccccccCCceEec
Q 037953 202 LRHLIFTEDLLEY-----MPKGIEKLTSLRTLSEFVVA 234 (625)
Q Consensus 202 L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~~~~~~ 234 (625)
|++|++++|.++. ++.++..+++|+.|++..+.
T Consensus 281 L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 281 LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 9999998888765 45555667888888876554
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.97 E-value=4.5e-06 Score=76.73 Aligned_cols=117 Identities=14% Similarity=0.073 Sum_probs=78.3
Q ss_pred chhhhccCCcceEEEeecc-cCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh-----hhhccccccccccee
Q 037953 87 SLVSIFNAIKLRSLILFYW-IPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN-----EILNGVEKLIHLRYL 160 (625)
Q Consensus 87 ~~~~~~~l~~Lr~L~L~~~-~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~-----~lp~~~~~L~~L~~L 160 (625)
+...+...+.|++|+|++| .... .....+...+...++|++|+|+ +|.++ .+...+...++|++|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~-~g~~~l~~~L~~~~~L~~L~Ls--------~n~i~~~g~~~l~~~L~~n~~L~~L 98 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPV-PTLKACAEALKTNTYVKKFSIV--------GTRSNDPVAFALAEMLKVNNTLKSL 98 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCH-HHHHHHHHHHTTCCSCCEEECT--------TSCCCHHHHHHHHHHHHHCSSCCEE
T ss_pred HHHHHhcCCCCCEEEecCCCCCCH-HHHHHHHHHHHhCCCcCEEECc--------CCCCChHHHHHHHHHHHhCCCcCEE
Confidence 3455667888999999887 4211 1111122566778889999999 55543 345556667788888
Q ss_pred cC--CCCCC-----CchhhcCCCCCceEee--cCCCCCCc-----cccccccccccceEEecCcccc
Q 037953 161 KL--NLVGD-----LPEKCCELLNLQTLEL--ENSSHFKR-----FPQGIGKLINLRHLIFTEDLLE 213 (625)
Q Consensus 161 ~L--~~l~~-----lP~~i~~L~~L~~L~L--~~~~~l~~-----lp~~l~~L~~L~~L~l~~~~l~ 213 (625)
+| |.++. +...+...++|++|+| ++|. ++. +...+...++|++|+++.|.++
T Consensus 99 ~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 99 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 88 33554 4566777888999999 7777 653 3344566688888888777654
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.92 E-value=5.7e-06 Score=84.44 Aligned_cols=178 Identities=15% Similarity=0.108 Sum_probs=104.2
Q ss_pred CCceEEEEEEcCCCC---------cchhhhccCCcceEEEeecccCC---c----cccCchhhHHHhcCCceeEEEeecC
Q 037953 71 PEKLRHLMLVLGYEA---------PSLVSIFNAIKLRSLILFYWIPN---L----DAMLPVLKGIFDQLTCLRALRIEGT 134 (625)
Q Consensus 71 ~~~lr~L~l~~~~~~---------~~~~~~~~l~~Lr~L~L~~~~~~---~----~~~lp~~~~~~~~l~~Lr~L~Ls~c 134 (625)
+.+++.|.+...... .+..+..++++|+.|.+...... + ...++ ..+..+++|+.|+|+
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~---~ll~~~P~L~~L~L~-- 180 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLS---PVLDAMPLLNNLKIK-- 180 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCH---HHHHTCTTCCEEEEE--
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHH---HHHhcCCCCcEEEEe--
Confidence 345666666543332 23455678899999999764211 1 12355 778999999999999
Q ss_pred CCccccccchhhhhcccccccccceecC-CC-CCC-Cchhhc--CCCCCceEeecCCC-------CCCcccccc--cccc
Q 037953 135 DNWELEEDQTNEILNGVEKLIHLRYLKL-NL-VGD-LPEKCC--ELLNLQTLELENSS-------HFKRFPQGI--GKLI 200 (625)
Q Consensus 135 ~~~~~~~~~l~~lp~~~~~L~~L~~L~L-~~-l~~-lP~~i~--~L~~L~~L~L~~~~-------~l~~lp~~l--~~L~ 200 (625)
++.-..++. + .+++|+.|+| +. +.. ....+. ++++|++|+|+.+. .+..+...+ ..++
T Consensus 181 ------g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p 252 (362)
T 2ra8_A 181 ------GTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP 252 (362)
T ss_dssp ------CCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCT
T ss_pred ------CCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCC
Confidence 543123443 4 3889999999 43 422 112333 79999999996421 122222222 3578
Q ss_pred ccceEEecCccccc-cccc---CCCccccccCCceEecCCCCcCCCcccChhccccccccccceEEecc
Q 037953 201 NLRHLIFTEDLLEY-MPKG---IEKLTSLRTLSEFVVASGGGRYGSEACKLEGLRHLNHLRGSLKVRGL 265 (625)
Q Consensus 201 ~L~~L~l~~~~l~~-lp~~---i~~L~~L~~L~~~~~~~~~~~~~~~~~~l~~l~~L~~L~~~L~l~~~ 265 (625)
+|++|++.++.+.. .+.. ...+++|++|+++.+...... .......+.++++|+ .|.++.+
T Consensus 253 ~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G---~~~L~~~L~~l~~L~-~L~L~~n 317 (362)
T 2ra8_A 253 NLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG---ARLLLDHVDKIKHLK-FINMKYN 317 (362)
T ss_dssp TCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH---HHHHHTTHHHHTTCS-EEECCSB
T ss_pred CcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH---HHHHHhhcccCCcce-EEECCCC
Confidence 99999996665542 1111 235788888887544322200 001122345666777 7777654
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.89 E-value=9e-06 Score=73.06 Aligned_cols=86 Identities=9% Similarity=0.133 Sum_probs=65.5
Q ss_pred CCCCeEEEEEecccccccCCcccccccchhhHHHHhhcCCCCCCCcEEEEeccCCCcccCCchhhc---c----cccccE
Q 037953 283 KNLVRLILRFKDIDKAVKRWPEAISNENAAKHEAICEALWPPPNLESLEIAGFRGRKMMLSTNWMA---S----LNMLKK 355 (625)
Q Consensus 283 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~p~~l~---~----l~~L~~ 355 (625)
-+|+.|+++++.++ ..-...+..+++|+.|+|++|...+ ...+. . .++|++
T Consensus 61 ~~L~~LDLs~~~It------------------d~GL~~L~~~~~L~~L~L~~C~~It----D~gL~~L~~~~~~~~~L~~ 118 (176)
T 3e4g_A 61 YKIQAIDATDSCIM------------------SIGFDHMEGLQYVEKIRLCKCHYIE----DGCLERLSQLENLQKSMLE 118 (176)
T ss_dssp CCEEEEEEESCCCC------------------GGGGGGGTTCSCCCEEEEESCTTCC----HHHHHHHHTCHHHHHHCCE
T ss_pred ceEeEEeCcCCCcc------------------HHHHHHhcCCCCCCEEEeCCCCccC----HHHHHHHHhcccccCCCCE
Confidence 47999999987532 3334556789999999999998665 23333 3 247999
Q ss_pred EEEeCCCCCCC--CCCCCCCCCcceeeccccccceee
Q 037953 356 LRLLNCPTCEI--MPPLGQLPSLEILLIKDMTSVERV 390 (625)
Q Consensus 356 L~L~~c~~l~~--l~~l~~l~~L~~L~L~~~~~l~~l 390 (625)
|+|++|..+++ +..+..+++|+.|+|++|+.++..
T Consensus 119 L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 119 MEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp EEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred EEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 99999998876 445678999999999999977653
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.68 E-value=0.00019 Score=73.85 Aligned_cols=78 Identities=8% Similarity=0.076 Sum_probs=39.4
Q ss_pred ccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeecCCCccccccchhhhhc-ccccccccceecC-CCCCCCc
Q 037953 92 FNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHLRYLKL-NLVGDLP 169 (625)
Q Consensus 92 ~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L~~L~L-~~l~~lP 169 (625)
....+|+++.+... +..+-. .+|.+|.+|+.++|. .+ +..|++ +|.++ +|+.+.+ .++..++
T Consensus 43 ~~~~~i~~v~ip~~---vt~Ig~---~aF~~C~~L~~I~lp--------~~-v~~Ig~~aF~~c-~l~~i~~~~~l~~I~ 106 (379)
T 4h09_A 43 KDRDRISEVRVNSG---ITSIGE---ANFNSCYNMTKVTVA--------ST-VTSIGDGAFADT-KLQSYTGMERVKKFG 106 (379)
T ss_dssp GGGGGCSEEEECTT---EEEECT---TTTTTCTTCCEEEEC--------TT-CCEECTTTTTTC-CCCEEEECTTCCEEC
T ss_pred ccccCCEEEEeCCC---ccChHH---HHhhCCCCCCEEEeC--------Cc-ceEechhhhcCC-CCceEECCceeeEec
Confidence 34455666666542 122222 556666666666665 32 334432 35444 4555555 4455554
Q ss_pred hhhcCCCCCceEeecC
Q 037953 170 EKCCELLNLQTLELEN 185 (625)
Q Consensus 170 ~~i~~L~~L~~L~L~~ 185 (625)
.......+|+.+.+..
T Consensus 107 ~~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 107 DYVFQGTDLDDFEFPG 122 (379)
T ss_dssp TTTTTTCCCSEEECCT
T ss_pred cceeccCCcccccCCC
Confidence 4433344566666654
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.62 E-value=1.7e-05 Score=72.81 Aligned_cols=105 Identities=14% Similarity=0.131 Sum_probs=74.8
Q ss_pred HHHhcCCceeEEEeecCCCcccccc-ch-----hhhhcccccccccceecC--CCCCC-----CchhhcCCCCCceEeec
Q 037953 118 GIFDQLTCLRALRIEGTDNWELEED-QT-----NEILNGVEKLIHLRYLKL--NLVGD-----LPEKCCELLNLQTLELE 184 (625)
Q Consensus 118 ~~~~~l~~Lr~L~Ls~c~~~~~~~~-~l-----~~lp~~~~~L~~L~~L~L--~~l~~-----lP~~i~~L~~L~~L~L~ 184 (625)
..+...+.|++|+|+ +| .+ ..+...+...++|++|+| |.++. +...+...++|++|+|+
T Consensus 30 ~~l~~~~~L~~L~L~--------~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~ 101 (185)
T 1io0_A 30 RIQNNDPDLEEVNLN--------NIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE 101 (185)
T ss_dssp HHHTTCTTCCEEECT--------TCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHhcCCCCCEEEec--------CCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECc
Confidence 678889999999999 55 43 345667778889999999 44543 44556677889999999
Q ss_pred CCCCCCc-----cccccccccccceEEe--cCccccc-----ccccCCCccccccCCce
Q 037953 185 NSSHFKR-----FPQGIGKLINLRHLIF--TEDLLEY-----MPKGIEKLTSLRTLSEF 231 (625)
Q Consensus 185 ~~~~l~~-----lp~~l~~L~~L~~L~l--~~~~l~~-----lp~~i~~L~~L~~L~~~ 231 (625)
+|. ++. +...+...++|++|++ ++|.++. +...+...++|++|++.
T Consensus 102 ~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 102 SNF-ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp SSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred CCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 998 764 4556777888999999 7787754 22233334555555543
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.59 E-value=0.0022 Score=65.77 Aligned_cols=79 Identities=11% Similarity=0.176 Sum_probs=53.4
Q ss_pred HHHhcCCceeEEEeecCCCccccccchhhhhc-ccccccccceecC-CCCCCCchh-hcCCCCCceEeecCCCCCCcccc
Q 037953 118 GIFDQLTCLRALRIEGTDNWELEEDQTNEILN-GVEKLIHLRYLKL-NLVGDLPEK-CCELLNLQTLELENSSHFKRFPQ 194 (625)
Q Consensus 118 ~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~lp~-~~~~L~~L~~L~L-~~l~~lP~~-i~~L~~L~~L~L~~~~~l~~lp~ 194 (625)
.++....+|+.+.+. . .++.|++ +|.++.+|+.+.| +++..++.. +.++ +|+.+.+..+ +..++.
T Consensus 40 ~~~~~~~~i~~v~ip--------~-~vt~Ig~~aF~~C~~L~~I~lp~~v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~ 107 (379)
T 4h09_A 40 PWYKDRDRISEVRVN--------S-GITSIGEANFNSCYNMTKVTVASTVTSIGDGAFADT-KLQSYTGMER--VKKFGD 107 (379)
T ss_dssp TTGGGGGGCSEEEEC--------T-TEEEECTTTTTTCTTCCEEEECTTCCEECTTTTTTC-CCCEEEECTT--CCEECT
T ss_pred cccccccCCEEEEeC--------C-CccChHHHHhhCCCCCCEEEeCCcceEechhhhcCC-CCceEECCce--eeEecc
Confidence 357777889988887 3 3666654 5888999999999 667777654 4444 6777776543 566665
Q ss_pred ccccccccceEEec
Q 037953 195 GIGKLINLRHLIFT 208 (625)
Q Consensus 195 ~l~~L~~L~~L~l~ 208 (625)
......+|+.+.+.
T Consensus 108 ~aF~~~~L~~i~lp 121 (379)
T 4h09_A 108 YVFQGTDLDDFEFP 121 (379)
T ss_dssp TTTTTCCCSEEECC
T ss_pred ceeccCCcccccCC
Confidence 53333478888774
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.33 E-value=0.00013 Score=70.59 Aligned_cols=78 Identities=23% Similarity=0.224 Sum_probs=45.3
Q ss_pred ccccccceecC-CC-CCCC---chhhcCCCCCceEeecCCCCCCcccccccccc--ccceEEecCccccc-cc-------
Q 037953 152 EKLIHLRYLKL-NL-VGDL---PEKCCELLNLQTLELENSSHFKRFPQGIGKLI--NLRHLIFTEDLLEY-MP------- 216 (625)
Q Consensus 152 ~~L~~L~~L~L-~~-l~~l---P~~i~~L~~L~~L~L~~~~~l~~lp~~l~~L~--~L~~L~l~~~~l~~-lp------- 216 (625)
.++++|+.|+| ++ +..+ |..+..+++|++|+|++|. +..+ ..+..++ +|++|++.+|.+.. +|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 35666777777 33 4443 3455677777777777776 6655 3344444 77777776665542 33
Q ss_pred ccCCCccccccCCce
Q 037953 217 KGIEKLTSLRTLSEF 231 (625)
Q Consensus 217 ~~i~~L~~L~~L~~~ 231 (625)
..+..+++|+.|+..
T Consensus 245 ~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 245 AIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHCTTCCEESSC
T ss_pred HHHHHCcccCeECCc
Confidence 124456666666643
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.26 E-value=0.00019 Score=69.50 Aligned_cols=104 Identities=16% Similarity=0.144 Sum_probs=73.1
Q ss_pred hccCCcceE--EEeecccCCccccCc-hhhHHHhcCCceeEEEeecCCCccccccchhhh---hcccccccccceecC-C
Q 037953 91 IFNAIKLRS--LILFYWIPNLDAMLP-VLKGIFDQLTCLRALRIEGTDNWELEEDQTNEI---LNGVEKLIHLRYLKL-N 163 (625)
Q Consensus 91 ~~~l~~Lr~--L~L~~~~~~~~~~lp-~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~~l---p~~~~~L~~L~~L~L-~ 163 (625)
+...+.|+. ++++.|. ...++ .++....++++|++|+|+ +|.+..+ |..+..+++|++|+| +
T Consensus 137 l~~dp~L~~~~l~l~~N~---~~~~~~~l~i~~~~l~~L~~L~Ls--------~N~l~~l~~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 137 LRSDPDLVAQNIDVVLNR---RSCMAATLRIIEENIPELLSLNLS--------NNRLYRLDDMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp GGGCHHHHHTTCCCCTTS---HHHHHHHHHHHHHHCTTCCEEECT--------TSCCCCCGGGTTHHHHSTTCCEEECTT
T ss_pred cCCCcchhhcCccccCCH---HHHHHHHHHHHHhhCCCCCEEECC--------CCCCCCCccchhHHhhCCCCCEEECCC
Confidence 445556666 6666653 22222 011334679999999999 8886654 566789999999999 5
Q ss_pred C-CCCCchhhcCCC--CCceEeecCCCCCC-cccc-------ccccccccceEEe
Q 037953 164 L-VGDLPEKCCELL--NLQTLELENSSHFK-RFPQ-------GIGKLINLRHLIF 207 (625)
Q Consensus 164 ~-l~~lP~~i~~L~--~L~~L~L~~~~~l~-~lp~-------~l~~L~~L~~L~l 207 (625)
+ +..+ ..+..+. +|++|+|++|. +. .+|. .+..+++|+.||-
T Consensus 206 N~i~~~-~~l~~l~~l~L~~L~L~~Np-l~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 206 NELKSE-RELDKIKGLKLEELWLDGNS-LCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp SCCCSG-GGGGGGTTSCCSEEECTTST-TGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred CccCCc-hhhhhcccCCcceEEccCCc-CccccCcchhHHHHHHHHCcccCeECC
Confidence 5 8777 4556555 99999999999 54 4542 3678999999985
No 161
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.22 E-value=0.00011 Score=79.77 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=40.9
Q ss_pred cHHHHHHHHHHHHhhCCCCcccccCCCCCEeeEEeChHHHHHHHHHhhccce
Q 037953 2 EMEMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKECA 53 (625)
Q Consensus 2 ~~e~~g~~~~~~L~~~sll~~~~~~~~g~~~~~~mHdlv~d~~~~i~~~e~~ 53 (625)
++||+|+ ||++|++|||+++...+ ...+|+|||+||++|+.++++++.
T Consensus 426 ~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 426 LDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 4788998 99999999999987643 445799999999999999987764
No 162
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=93.52 E-value=0.054 Score=64.59 Aligned_cols=45 Identities=20% Similarity=0.190 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhhCCCCcccccCCCCCEeeEEeChHHHHHHHHHhhcc
Q 037953 4 EMIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLNKKE 51 (625)
Q Consensus 4 e~~g~~~~~~L~~~sll~~~~~~~~g~~~~~~mHdlv~d~~~~i~~~e 51 (625)
++.+++++++|+++||++... +|...+|+|||+||++|+..+.++
T Consensus 408 ~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 678899999999999999754 355567899999999999998766
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.33 E-value=0.17 Score=42.76 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=20.7
Q ss_pred CCceEeecCCCCCCccccc-cccccccceEEecCcc
Q 037953 177 NLQTLELENSSHFKRFPQG-IGKLINLRHLIFTEDL 211 (625)
Q Consensus 177 ~L~~L~L~~~~~l~~lp~~-l~~L~~L~~L~l~~~~ 211 (625)
+|++|+|++|. ++.+|.+ |..+++|++|+|..|.
T Consensus 32 ~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 46666666666 6666554 4556666666665553
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=91.80 E-value=0.14 Score=46.54 Aligned_cols=112 Identities=9% Similarity=0.033 Sum_probs=56.4
Q ss_pred hhccCCcceEEEeecc-cCCccccCchhhHHHhcCCceeEEEeecCCCccccccchh-----hhhcccccccccceecC-
Q 037953 90 SIFNAIKLRSLILFYW-IPNLDAMLPVLKGIFDQLTCLRALRIEGTDNWELEEDQTN-----EILNGVEKLIHLRYLKL- 162 (625)
Q Consensus 90 ~~~~l~~Lr~L~L~~~-~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~c~~~~~~~~~l~-----~lp~~~~~L~~L~~L~L- 162 (625)
.+.+-+.|++|+|+++ ... ......+.+.+..-+.|+.|+|+ +|.++ .+.+.+..-+.|+.|+|
T Consensus 36 ll~~n~~L~~L~L~~nn~ig-d~ga~~la~aL~~N~~L~~L~L~--------~n~igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVS-KERIRSLIEAACNSKHIEKFSLA--------NTAISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSC-HHHHHHHHHHHTTCSCCCEEECT--------TSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred HHhcCCCccEEECCCCCCCC-HHHHHHHHHHHhhCCCcCEEEcc--------CCCCChHHHHHHHHHHhcCCccCeEecC
Confidence 3344567777777764 211 11111112555666777777777 55543 23334444556666666
Q ss_pred CC-CCC-----CchhhcCCCCCceEeecCCC--CCCc-----cccccccccccceEEecCc
Q 037953 163 NL-VGD-----LPEKCCELLNLQTLELENSS--HFKR-----FPQGIGKLINLRHLIFTED 210 (625)
Q Consensus 163 ~~-l~~-----lP~~i~~L~~L~~L~L~~~~--~l~~-----lp~~l~~L~~L~~L~l~~~ 210 (625)
++ ++. +-+.+..-+.|+.|+|++|. .++. +-..+..-+.|+.|++..+
T Consensus 107 ~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 107 SNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp SSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred CCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 33 432 22334444557777776543 1231 2222344456666666443
No 165
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=87.95 E-value=0.47 Score=51.41 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhCCCCcccccCCCCCEeeEEeChHHHHHHHHHh
Q 037953 5 MIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFALFLN 48 (625)
Q Consensus 5 ~~g~~~~~~L~~~sll~~~~~~~~g~~~~~~mHdlv~d~~~~i~ 48 (625)
+.++.++++|+++|||+... +|...+|+|||+||++++...
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~---~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDR---NGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEE---ETTEEEEECCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCeEEec---CCCccEEEEcHHHHHHHHhhh
Confidence 46789999999999998643 355667999999999998874
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=87.29 E-value=0.35 Score=40.76 Aligned_cols=51 Identities=20% Similarity=0.159 Sum_probs=31.1
Q ss_pred EEEEEcCCCC--cchhhhccCCcceEEEeecccCCccccCchhhHHHhcCCceeEEEeec
Q 037953 76 HLMLVLGYEA--PSLVSIFNAIKLRSLILFYWIPNLDAMLPVLKGIFDQLTCLRALRIEG 133 (625)
Q Consensus 76 ~L~l~~~~~~--~~~~~~~~l~~Lr~L~L~~~~~~~~~~lp~~~~~~~~l~~Lr~L~Ls~ 133 (625)
+++.+++++. .+|..+. ++|+.|+|++|. +....+ +.|..+++|++|+|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~--l~~l~~---~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNN--LTALPP---GLLDALPALRTAHLGA 64 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSC--CSSCCT---TTGGGCTTCCEEECCS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCc--CCccCh---hhhhhccccCEEEecC
Confidence 4455555555 6664432 457777777755 333444 6677777777777773
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=87.16 E-value=0.47 Score=43.09 Aligned_cols=82 Identities=12% Similarity=0.128 Sum_probs=44.6
Q ss_pred HHHhcCCceeEEEeecCCCcccccc-chh-----hhhcccccccccceecC--CCCC-----CCchhhcCCCCCceEeec
Q 037953 118 GIFDQLTCLRALRIEGTDNWELEED-QTN-----EILNGVEKLIHLRYLKL--NLVG-----DLPEKCCELLNLQTLELE 184 (625)
Q Consensus 118 ~~~~~l~~Lr~L~Ls~c~~~~~~~~-~l~-----~lp~~~~~L~~L~~L~L--~~l~-----~lP~~i~~L~~L~~L~L~ 184 (625)
..+.+-+.|+.|+|+ ++ .++ .+-+.+..-+.|+.|+| |.++ .+-+.+..-+.|++|+|+
T Consensus 35 ~ll~~n~~L~~L~L~--------~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~ 106 (197)
T 1pgv_A 35 RLREDDTDLKEVNIN--------NMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVE 106 (197)
T ss_dssp HHHTTCSSCCEEECT--------TCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECC
T ss_pred HHHhcCCCccEEECC--------CCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecC
Confidence 455667889999998 54 443 34445555566666666 2232 233334445566666666
Q ss_pred CCCCCCc-----cccccccccccceEEec
Q 037953 185 NSSHFKR-----FPQGIGKLINLRHLIFT 208 (625)
Q Consensus 185 ~~~~l~~-----lp~~l~~L~~L~~L~l~ 208 (625)
+|. ++. +-+.+..-+.|++|+++
T Consensus 107 ~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 107 SNF-LTPELLARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp SSB-CCHHHHHHHHHHTTTTCCCSEEECC
T ss_pred CCc-CCHHHHHHHHHHHhhCCceeEEECC
Confidence 666 542 11223333445555553
No 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=80.68 E-value=0.79 Score=52.32 Aligned_cols=36 Identities=11% Similarity=-0.006 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhhCCCCcccccCCCCCEeeEEeChHHHHHHH
Q 037953 5 MIAEGYFDYLATRSLFQEFQRDEEGIVKRCKMHDIVHDFAL 45 (625)
Q Consensus 5 ~~g~~~~~~L~~~sll~~~~~~~~g~~~~~~mHdlv~d~~~ 45 (625)
+.|+++|++|+++|||+.. +...+|+|||++++++.
T Consensus 402 edAe~~L~eLvdRSLLq~d-----~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 402 SDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHHHTSSSSSBC-----SSSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCEEEe-----CCCCEEEehHHHHHHhc
Confidence 4689999999999999983 22346899999999653
No 169
>1vko_A Inositol-3-phosphate synthase; CE21227, structural genomics, protein structure initiative, PSI, joint center for structu genomics; HET: NAD; 2.30A {Caenorhabditis elegans} SCOP: c.2.1.3 d.81.1.3
Probab=64.56 E-value=2 Score=44.24 Aligned_cols=45 Identities=33% Similarity=0.592 Sum_probs=38.3
Q ss_pred eEEEeeccccccCCccccccCCCCCCcccchh----cccchhhhhhccc
Q 037953 579 FFVTFESILPKVNSDDIAFGGRHTSDMNLAEA----KVLDIDFIAEIYD 623 (625)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 623 (625)
.++.|...+|-.+..|++|||--+++||++|| +|+|.|....+++
T Consensus 138 ~~~p~~~~lpl~~p~dlVfGGwDI~~~nl~~a~~rA~VLd~~l~~~v~~ 186 (537)
T 1vko_A 138 IFVPFKDIVPILSPNDLIISGWDISDSNLYEAMGRAKVFEPELQEKLRP 186 (537)
T ss_dssp EEEEGGGTSCCCCGGGEEEEEECSSCCCTTHHHHHHTCSCHHHHHHHHH
T ss_pred cccchhccCCCCChhhEEEecccCCCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 45677788899999999999999999999997 8999887765543
No 170
>1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH, isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.3 PDB: 1jkf_A* 1la2_A* 1p1f_A 1jki_A* 1p1i_A* 1p1h_A* 1p1k_A* 1rm0_A*
Probab=64.45 E-value=1.8 Score=44.41 Aligned_cols=45 Identities=29% Similarity=0.558 Sum_probs=38.2
Q ss_pred eEEEeeccccccCCccccccCCCCCCcccchh----cccchhhhhhccc
Q 037953 579 FFVTFESILPKVNSDDIAFGGRHTSDMNLAEA----KVLDIDFIAEIYD 623 (625)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 623 (625)
+++.|...+|-.+..|++|||--+++||++|| +|+|.|....+++
T Consensus 126 ~~~p~~~~lpl~~p~dlVfGGWDI~~~nl~~a~~rA~VL~~~l~~~v~~ 174 (533)
T 1p1j_A 126 VYAPFNSLLPMVSPNDFVVSGWDINNADLYEAMQRSQVLEYDLQQRLKA 174 (533)
T ss_dssp EEEEGGGSSCCCCGGGEEEEEECSSCCCHHHHHHHHTCSCHHHHHHHHH
T ss_pred ccCchhhcCCCCChhheEEecccCCCCCHHHHHHHcCCCCHHHHHHHHH
Confidence 46777888999999999999999999999987 8888887665543
No 171
>3qvs_A MIPS, MYO-inositol-1-phosphate synthase (INO1); NAD binding rossmann fold, L-MYO-inositol 1-phosphate syntha isomerase; HET: NAD PG4; 1.70A {Archaeoglobus fulgidus} PDB: 1u1i_A* 3qvt_A* 3qvw_A* 3qvx_A* 3qw2_A*
Probab=22.11 E-value=17 Score=36.26 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=30.8
Q ss_pred cccccCCccccccCCCCCC-cccch--------hcccchhhhhhcc
Q 037953 586 ILPKVNSDDIAFGGRHTSD-MNLAE--------AKVLDIDFIAEIY 622 (625)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~~~~~~~ 622 (625)
++|-.+..|+.|||--+++ +|+.| |+|+|.+....++
T Consensus 42 ~lpl~~~~Dlv~GGwDI~~~~~l~~aa~~~~~~a~Vl~~~l~~~v~ 87 (392)
T 3qvs_A 42 GIEKYAPFSFEFGGHEIRLLSNAYEAAKEHWELNRHFDREILEAVK 87 (392)
T ss_dssp TGGGTSCSCCEEEEEESSCCSCHHHHHHHHHHHHCCSCHHHHHHTH
T ss_pred cCCCCChhhEEEeeeeCCCCCCHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 5688899999999999999 89987 7799998665544
Done!