BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037955
(733 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S4B|P Chain P, Crystal Structure Of Human Thimet Oligopeptidase
Length = 674
Score = 230 bits (586), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 167/602 (27%), Positives = 290/602 (48%), Gaps = 46/602 (7%)
Query: 116 PDREFVEEASKASMRISEYLHYLNTNHTLYDAV----KKAELDGHLLSKEAHRAANHLRI 171
P ++ +++A ++SE+ ++ +Y + +K + D L EA R L
Sbjct: 75 PSKDIRTASTEADKKLSEFDVEMSMREDVYQRIVWLQEKVQKDS--LRPEAARYLERLIK 132
Query: 172 DFEKGGIHLCADKLDRVNQLNMDIFQLCREFNQNIINDPGHVDIFPESRIPKHIHHLLKP 231
+ G+HL + + + ++ + LC +FN+N+ D + +P + L
Sbjct: 133 LGRRNGLHLPRETQENIKRIKKKLSLLCIDFNKNLNEDT--------TFLPFTLQEL--- 181
Query: 232 ICRLTSGPSRESLISWDNKKEKGFRITTDSRILQSILQWTSDDEVRKMVYIQGHS-VPQA 290
G + L S + ++ ++T +L+ E R+ V +S +
Sbjct: 182 -----GGLPEDFLNSLEKMEDGKLKVTLKYPHYFPLLKKCHVPETRRKVEEAFNSRCKEE 236
Query: 291 NHEVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKADEEFE 350
N +L EL+ R + ++++G+ ++A++++ NMA + + V +FL E+++ +KP ++E
Sbjct: 237 NSAILKELVTLRAQKSRLLGFHTHADYVLEMNMAKTSQTVATFLDELAQKLKPLGEQERA 296
Query: 351 AIKNFKRKSCGQKYV----HLEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCIEGLKM 406
I KR C ++ + + WD YY ++ + Y +D ++ YFP+ GL
Sbjct: 297 VILELKRAECERRGLPFDGRIRAWDMRYYMNQVEETRYCVDQNLLKEYFPVQVVTHGLLG 356
Query: 407 LAESLFGVTFHSVPLAPGESWHPDVLKLSLQHPEEGEM-GYLYLDLYSRAGKYTGCANFA 465
+ + L G+ FH A +WH DV + + GE+ G YLDLY R GKY A F
Sbjct: 357 IYQELLGLAFHHEEGA--SAWHEDVRLYTARDAASGEVVGKFYLDLYPREGKYGHAACFG 414
Query: 466 IKGGRRLSETEYQLPVVALICNF--PGSHNLSVRLNHHEVETLFHEFGHALHSLLSRTDY 523
++ G + Q+ + A++ NF P + S+ L H EVET FHEFGH +H L S+ ++
Sbjct: 415 LQPGCLRQDGSRQIAIAAMVANFTKPTADAPSL-LQHDEVETYFHEFGHVMHQLCSQAEF 473
Query: 524 QHFSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVP----EKLVKSMQGARD 579
FSGT V DF E PS + E + W+ L R ++HY TG VP EKL++S Q
Sbjct: 474 AMFSGTHVERDFVEAPSQMLENWVWEQEPLLRMSRHYRTGSAVPRELLEKLIESRQANTG 533
Query: 580 MFAATELQRQIFYALVDQTLFGERLGQTRDTSSIVADMKRQHTSWNHVEGTHWHIRFSHF 639
+F RQI A VDQ L + D + A + ++ GT+ F H
Sbjct: 534 LFNL----RQIVLAKVDQALHTQ---TDADPAEEYARLCQEILGVPATPGTNMPATFGHL 586
Query: 640 I-NYGAGYYSYLYAKCFAATIWQ-KLCQEDPLSLTTGTTLRTKILQHGGAKEPADMLNDL 697
Y A YY YL+++ ++ ++ + QE L+ G R+ IL+ GG+++ + ML
Sbjct: 587 AGGYDAQYYGYLWSEVYSMDMFHTRFKQEGVLNSKVGMDYRSCILRPGGSEDASAMLRRF 646
Query: 698 VG 699
+G
Sbjct: 647 LG 648
>pdb|2O36|A Chain A, Crystal Structure Of Engineered Thimet Oligopeptidase With
Neurolysin Specificity In Neurotensin Cleavage Site
Length = 674
Score = 228 bits (582), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 166/602 (27%), Positives = 289/602 (48%), Gaps = 46/602 (7%)
Query: 116 PDREFVEEASKASMRISEYLHYLNTNHTLYDAV----KKAELDGHLLSKEAHRAANHLRI 171
P ++ +++A ++SE+ ++ +Y + +K + D L EA R L
Sbjct: 75 PSKDIRTASTEADKKLSEFDVEMSMREDVYQRIVWLQEKVQKDS--LRPEAARYLERLIK 132
Query: 172 DFEKGGIHLCADKLDRVNQLNMDIFQLCREFNQNIINDPGHVDIFPESRIPKHIHHLLKP 231
+ G+HL + + + ++ + LC +FN+N+ D + +P + L
Sbjct: 133 LGRRNGLHLPRETQENIKRIKKKLSLLCIDFNKNLNEDT--------TFLPFTLQEL--- 181
Query: 232 ICRLTSGPSRESLISWDNKKEKGFRITTDSRILQSILQWTSDDEVRKMVYIQGHS-VPQA 290
G + L S + ++ ++T +L+ E R+ V +S +
Sbjct: 182 -----GGLPEDFLNSLEKMEDGKLKVTLKYPHYFPLLKKCHVPETRRKVEEAFNSRCKEE 236
Query: 291 NHEVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKADEEFE 350
N +L EL+ R + ++++G+ ++A++++ NMA + + V +FL E+++ +KP ++E
Sbjct: 237 NSAILKELVTLRAQKSRLLGFHTHADYVLEMNMAKTSQTVATFLDELAQKLKPLGEQERA 296
Query: 351 AIKNFKRKSCGQKYV----HLEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCIEGLKM 406
I KR C ++ + + WD YY ++ + Y +D ++ YFP+ GL
Sbjct: 297 VILELKRAECERRGLPFDGRIRAWDMRYYMNQVEETRYCVDQNLLKEYFPVQVVTHGLLG 356
Query: 407 LAESLFGVTFHSVPLAPGESWHPDVLKLSLQHPEEGEM-GYLYLDLYSRAGKYTGCANFA 465
+ + L G+ FH A +WH DV + + GE+ G YLDLY R GKY A F
Sbjct: 357 IYQELLGLAFHHEEGA--SAWHEDVRLYTARDAASGEVVGKFYLDLYPREGKYGHAACFG 414
Query: 466 IKGGRRLSETEYQLPVVALICNF--PGSHNLSVRLNHHEVETLFHEFGHALHSLLSRTDY 523
++ G + Q+ + A++ NF P + S+ L H EV T FHEFGH +H L S+ ++
Sbjct: 415 LQPGCLRQDGSRQIAIAAMVANFTKPTADAPSL-LQHDEVRTYFHEFGHVMHQLCSQAEF 473
Query: 524 QHFSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVP----EKLVKSMQGARD 579
FSGT V DF E PS + E + W+ L R ++HY TG VP EKL++S Q
Sbjct: 474 AMFSGTHVETDFVEAPSQMLENWVWEQEPLLRMSRHYRTGSAVPRELLEKLIESRQANTG 533
Query: 580 MFAATELQRQIFYALVDQTLFGERLGQTRDTSSIVADMKRQHTSWNHVEGTHWHIRFSHF 639
+F RQI A VDQ L + D + A + ++ GT+ F H
Sbjct: 534 LFNL----RQIVLAKVDQALHTQ---TDADPAEEYARLCQEILGVPATPGTNMPATFGHL 586
Query: 640 I-NYGAGYYSYLYAKCFAATIWQ-KLCQEDPLSLTTGTTLRTKILQHGGAKEPADMLNDL 697
Y A YY YL+++ ++ ++ + QE L+ G R+ IL+ GG+++ + ML
Sbjct: 587 AGGYDAQYYGYLWSEVYSMDMFHTRFKQEGVLNSKVGMDYRSCILRPGGSEDASAMLRRF 646
Query: 698 VG 699
+G
Sbjct: 647 LG 648
>pdb|2O3E|A Chain A, Crystal Structure Of Engineered Neurolysin With Thimet
Oligopeptidase Specificity For Neurotensin Cleavage Site
Length = 678
Score = 216 bits (549), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 162/595 (27%), Positives = 284/595 (47%), Gaps = 36/595 (6%)
Query: 117 DREFVEEASKASMRISEYLHYLNTNHTLYDAVK--KAELDGHLLSKEAHRAANHLRIDFE 174
DRE +++A ++S + ++ ++ + + D + EA R +
Sbjct: 92 DREVRAASTEADKKLSRFDIEMSMREDVFQRIVHLQETCDLEKIKPEARRYLEKSIKMGK 151
Query: 175 KGGIHLCADKLDRVNQLNMDIFQLCREFNQNIINDPGHVDIFPESRIPKHIHHLLKPICR 234
+ G+HL + + + + +LC +FN+N+ D + +F ++ +
Sbjct: 152 RNGLHLSEHIRNEIKSMKKRMSELCIDFNKNLNEDDTSL-VFSKAEL------------- 197
Query: 235 LTSGPSRESLI-SWDNKKEKGFRITTDSRILQSILQWTSDDEVRKMVYIQGHS-VPQANH 292
G + I S + E +++T +++ E R+ + + H+ Q N
Sbjct: 198 ---GALPDDFIDSLEKTDEDKYKVTLKYPHYFPVMKKCCVPETRRKMEMAFHTRCKQENT 254
Query: 293 EVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKADEEFEAI 352
+L +L+ R ++A+++GY ++A+F++ N A S V +FL ++S+ +KP + E E I
Sbjct: 255 AILQQLLPLRAQVAKLLGYNTHADFVLELNTAKSTSRVAAFLDDLSQKLKPLGEAEREFI 314
Query: 353 KNFKRKSCGQKYVH----LEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCIEGLKMLA 408
+ K+K C ++ + WD YY + Y++D + YFP+ EGL +
Sbjct: 315 LSLKKKECEERGFEYDGKINAWDLHYYMTQTEELKYSVDQESLKEYFPIEVVTEGLLSIY 374
Query: 409 ESLFGVTFHSVPLAPGESWHPDVLKLSLQHPEEGE-MGYLYLDLYSRAGKYTGCANFAIK 467
+ L G++F VP A W+ V +++ GE +G YLDLY R GKY A F ++
Sbjct: 375 QELLGLSFEQVPDA--HVWNKSVSLYTVKDKATGEVLGQFYLDLYPREGKYNHAACFGLQ 432
Query: 468 GGRRLSETEYQLPVVALICNF--PGSHNLSVRLNHHEVETLFHEFGHALHSLLSRTDYQH 525
G L + + V AL+ NF P + S+ L H EVET FHEFGH +H + ++TD+
Sbjct: 433 PGCLLPDGSRMMSVAALVVNFSQPVAGRPSL-LRHDEVETYFHEFGHVMHQICAQTDFAR 491
Query: 526 FSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVPEKLVKSMQGARDMFAATE 585
FSGT V DF E PS + E + WD LR+ +KHY G + ++L++ + +R +
Sbjct: 492 FSGTNVERDFVEVPSQMLENWVWDVDSLRKLSKHYKDGHPITDELLEKLVASRLVNTGLL 551
Query: 586 LQRQIFYALVDQTLFGERLGQTRDTSSIVADMKRQHTSWNHVEGTHWHIRFSHF-INYGA 644
RQI + VDQ+L T D +S A + GT+ F H Y
Sbjct: 552 TLRQIVLSKVDQSL---HTNATLDAASEYAKYCTEILGVAATPGTNMPATFGHLAGGYDG 608
Query: 645 GYYSYLYAKCFAATIWQK-LCQEDPLSLTTGTTLRTKILQHGGAKEPADMLNDLV 698
YY YL+++ F+ ++ +E ++ G R IL+ GG+ + DML + +
Sbjct: 609 QYYGYLWSEVFSMDMFHSCFKKEGIMNPEVGMKYRNLILKPGGSLDGMDMLQNFL 663
>pdb|1I1I|P Chain P, Neurolysin (Endopeptidase 24.16) Crystal Structure
Length = 681
Score = 214 bits (544), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 161/595 (27%), Positives = 283/595 (47%), Gaps = 36/595 (6%)
Query: 117 DREFVEEASKASMRISEYLHYLNTNHTLYDAVK--KAELDGHLLSKEAHRAANHLRIDFE 174
DRE +++A ++S + ++ ++ + + D + EA R +
Sbjct: 92 DREVRAASTEADKKLSRFDIEMSMREDVFQRIVHLQETCDLEKIKPEARRYLEKSIKMGK 151
Query: 175 KGGIHLCADKLDRVNQLNMDIFQLCREFNQNIINDPGHVDIFPESRIPKHIHHLLKPICR 234
+ G+HL + + + + +LC +FN+N+ D + +F ++ +
Sbjct: 152 RNGLHLSEHIRNEIKSMKKRMSELCIDFNKNLNEDDTSL-VFSKAEL------------- 197
Query: 235 LTSGPSRESLI-SWDNKKEKGFRITTDSRILQSILQWTSDDEVRKMVYIQGHS-VPQANH 292
G + I S + E +++T +++ E R+ + + H+ Q N
Sbjct: 198 ---GALPDDFIDSLEKTDEDKYKVTLKYPHYFPVMKKCCVPETRRKMEMAFHTRCKQENT 254
Query: 293 EVLHELIAARNELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKADEEFEAI 352
+L +L+ R ++A+++GY ++A+F++ N A S V +FL ++S+ +KP + E E I
Sbjct: 255 AILQQLLPLRAQVAKLLGYNTHADFVLELNTAKSTSRVAAFLDDLSQKLKPLGEAEREFI 314
Query: 353 KNFKRKSCGQKYVH----LEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCIEGLKMLA 408
+ K+K C ++ + WD YY + Y++D + YFP+ EGL +
Sbjct: 315 LSLKKKECEERGFEYDGKINAWDLHYYMTQTEELKYSVDQESLKEYFPIEVVTEGLLSIY 374
Query: 409 ESLFGVTFHSVPLAPGESWHPDVLKLSLQHPEEGE-MGYLYLDLYSRAGKYTGCANFAIK 467
+ L G++F VP A W+ V +++ GE +G YLDLY R GKY A F ++
Sbjct: 375 QELLGLSFEQVPDA--HVWNKSVSLYTVKDKATGEVLGQFYLDLYPREGKYNHAACFGLQ 432
Query: 468 GGRRLSETEYQLPVVALICNF--PGSHNLSVRLNHHEVETLFHEFGHALHSLLSRTDYQH 525
G L + + V AL+ NF P + S+ L H EV T FHEFGH +H + ++TD+
Sbjct: 433 PGCLLPDGSRMMSVAALVVNFSQPVAGRPSL-LRHDEVRTYFHEFGHVMHQICAQTDFAR 491
Query: 526 FSGTRVALDFAETPSNLFEYYAWDYRVLRRFAKHYLTGEIVPEKLVKSMQGARDMFAATE 585
FSGT V DF E PS + E + WD LR+ +KHY G + ++L++ + +R +
Sbjct: 492 FSGTNVETDFVEVPSQMLENWVWDVDSLRKLSKHYKDGHPITDELLEKLVASRLVNTGLL 551
Query: 586 LQRQIFYALVDQTLFGERLGQTRDTSSIVADMKRQHTSWNHVEGTHWHIRFSHF-INYGA 644
RQI + VDQ+L T D +S A + GT+ F H Y
Sbjct: 552 TLRQIVLSKVDQSL---HTNATLDAASEYAKYCTEILGVAATPGTNMPATFGHLAGGYDG 608
Query: 645 GYYSYLYAKCFAATIWQK-LCQEDPLSLTTGTTLRTKILQHGGAKEPADMLNDLV 698
YY YL+++ F+ ++ +E ++ G R IL+ GG+ + DML + +
Sbjct: 609 QYYGYLWSEVFSMDMFHSCFKKEGIMNPEVGMKYRNLILKPGGSLDGMDMLQNFL 663
>pdb|1Y79|1 Chain 1, Crystal Structure Of The E.Coli Dipeptidyl
Carboxypeptidase Dcp In Complex With A Peptidic
Inhibitor
Length = 680
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 137/541 (25%), Positives = 238/541 (43%), Gaps = 60/541 (11%)
Query: 83 EMPSSVEIIRAMDEISDAVCSVVDSAELCRQTHPDREFVEEASKASMRISEYLHYLNTNH 142
+MP I A+++ + + V H + E + S ++E + + N
Sbjct: 50 QMPDFNNTILALEQSGELLTRVTSVFFAMTAAHTNDELQRLDEQFSAELAELANDIYLNG 109
Query: 143 TLY---DAV-KKAELDGHLLSKEAHRAANHLRIDFEKGGIHLCADKLDRVNQLNMDIFQL 198
L+ DAV ++ E G L E+ R + F G L ++ LN + L
Sbjct: 110 ELFARVDAVWQRRESLG--LDSESIRLVEVIHQRFVLAGAKLAQADKAKLKVLNTEAATL 167
Query: 199 CREFNQNII--NDPGHVDIFPESRIPKHIHHLLKPICRLTSGPSRESLISWDNKKEKGFR 256
+FNQ ++ N G + ++ I +L +E ++ + +EKG
Sbjct: 168 TSQFNQRLLAANKSGGL--------------VVNDIAQLAGMSEQEIALAAEAAREKGL- 212
Query: 257 ITTDSRILQSILQWTS--------DDEVRKMVYIQGHSVPQAN-----HEVLHELIAARN 303
D++ L +L T D R+ ++I G + + N ++ L+ R
Sbjct: 213 ---DNKWLIPLLNTTQQPALAEMRDRATREKLFIAGWTRAEKNDANDTRAIIQRLVEIRA 269
Query: 304 ELAQIMGYRSYAEFIVMPNMASSPEVVKSFLLEMSKMIKPKADEEFEAIKNFKRKSCGQK 363
+ A ++G+ YA + + MA +PE +F+ E+ + +A +E +I+ K G
Sbjct: 270 QQATLLGFPHYAAWKIADQMAKTPEAALNFMREIVPAARQRASDELASIQAVIDKQQGG- 328
Query: 364 YVHLEPWDEAYYTAMMKSSAYNLDACVVASYFPLGQCI-EGLKMLAESLFGVTF---HSV 419
+PWD A+Y ++ ++LD + YF L + EG+ A LFG+ F +
Sbjct: 329 -FSAQPWDWAFYAEQVRREKFDLDEAQLKPYFELNTVLNEGVFWTANQLFGIKFVERFDI 387
Query: 420 PLAPGESWHPDVLKLSLQHPEEGEMGYLYLDLYSRAGKYTGC--ANFAIKGGRRLSETEY 477
P+ +HPDV + + Y D ++R K G NF + L++T
Sbjct: 388 PV-----YHPDVRVWEIFDHNGVGLALFYGDFFARDSKSGGAWMGNFVEQST--LNKTH- 439
Query: 478 QLPVVALICNF--PGSHNLSVRLNHHEVETLFHEFGHALHSLLSRTDYQHFSGTRVALDF 535
PV+ +CN+ P + ++ L +V TLFHEFGH LH L +R Y SGT DF
Sbjct: 440 --PVIYNVCNYQKPAAGEPALLL-WDDVITLFHEFGHTLHGLFARQRYATLSGTNTPRDF 496
Query: 536 AETPSNLFEYYAWDYRVLRRFAKHYLTGEIVPEKLVKSMQGARDMFAATELQRQIFYALV 595
E PS + E++A +V R+A+HY +G +P++L + M+ A E+ + AL+
Sbjct: 497 VEFPSQINEHWATHPQVFARYARHYQSGAAMPDELQQKMRNASLFNKGYEMSELLSAALL 556
Query: 596 D 596
D
Sbjct: 557 D 557
>pdb|3RPH|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+.
pdb|3RPZ|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+ AND SOAKED WITH Nadph
pdb|3RQ2|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+ AND SOAKED WITH Nadh
pdb|3RQ5|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Co-Crystallized With
AtpMG2+ AND SOAKED WITH Coa
pdb|3RQ6|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Soaked With
Adp-Ribose
pdb|3RQ8|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis Soaked With
P1,P5-Di(Adenosine-5') Pentaphosphate
pdb|3RQH|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis In Complex With
P1,P6-Di(Adenosine-5') Hexaphosphate
pdb|3RQQ|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis In Complex With
P1,P3-Di(Adenosine-5') Triphosphate
pdb|3RQX|A Chain A, Crystal Structure Of AdpATP-Dependent Nad(P)h-Hydrate
Dehydratase From Bacillus Subtilis In Complex With
P1,P4-Di(Adenosine-5') Tetraphosphate
Length = 279
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 61 NGFQRFVDDAIERSSELVNYISEMPSSVEIIRAMDEISDAVCSVV-DSAELCRQTHPDRE 119
+G+++ D +E + + +P + + +A+D + A C V+ D+ L ++T+P RE
Sbjct: 85 DGWKKAADAQLEETYRAIAIGPGLPQTESVQQAVDHVLTADCPVILDAGALAKRTYPKRE 144
>pdb|1KYH|A Chain A, Structure Of Bacillus Subtilis Yxko, A Member Of The
Upf0031 Family And A Putative Kinase
Length = 276
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 61 NGFQRFVDDAIERSSELVNYISEMPSSVEIIRAMDEISDAVCSVV-DSAELCRQTHPDRE 119
+G+++ D +E + + +P + + +A+D + A C V+ D+ L ++T+P RE
Sbjct: 82 DGWKKAADAQLEETYRAIAIGPGLPQTESVQQAVDHVLTADCPVILDAGALAKRTYPKRE 141
>pdb|2QR6|A Chain A, Crystal Structure Of Imp DehydrogenaseGMP REDUCTASE-Like
Protein (Np_599840.1) From Corynebacterium Glutamicum
Atcc 13032 Kitasato At 1.50 A Resolution
Length = 393
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 579 DMFAATELQRQIFYALVDQTLFGERLGQTRDTSSIVA 615
D AAT +++ A +D L ER+ Q RD+ IVA
Sbjct: 123 DQAAATRTLQELHAAPLDTELLSERIAQVRDSGEIVA 159
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 662 KLCQEDPLSLTTGTTLRTKILQHGGAKEPAD------MLNDLVGDGILRY 705
+LC+ DPL TG + K LQH G + D +L L D I++Y
Sbjct: 27 ELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKY 76
>pdb|1CR5|A Chain A, N-Terminal Domain Of Sec18p
pdb|1CR5|B Chain B, N-Terminal Domain Of Sec18p
pdb|1CR5|C Chain C, N-Terminal Domain Of Sec18p
Length = 189
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 39 FYTRTSNGVPTGLYGFDHLKSPNGFQRFVDDAIERSSELVNYISEMP--SSVEIIRAMDE 96
F TR SN +P G GF+ + G D ++ +L Y + S++I +
Sbjct: 45 FTTRHSNDIPPGTIGFNGNQRTWGGWSLNQDVQAKAFDLFKYSGKQSYLGSIDIDISFRA 104
Query: 97 ISDAVCSVVDSAELCRQ 113
AV +V D EL +Q
Sbjct: 105 RGKAVSTVFDQDELAKQ 121
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 662 KLCQEDPLSLTTGTTLRTKILQHGGAKEPAD------MLNDLVGDGILRY 705
+LC+ DPL TG + K LQH G + D +L L D I++Y
Sbjct: 40 ELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKY 89
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 662 KLCQEDPLSLTTGTTLRTKILQHGGAKEPAD------MLNDLVGDGILRY 705
+LC+ DPL TG + K LQH G + D +L L D I++Y
Sbjct: 28 ELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKY 77
>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex
With A Staurosporine Analogue
Length = 290
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 662 KLCQEDPLSLTTGTTLRTKILQHGGAKEPAD------MLNDLVGDGILRY 705
+LC+ DPL TG + K LQH G + D +L L D I++Y
Sbjct: 24 ELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKY 73
>pdb|2AIG|P Chain P, Adamalysin Ii With Peptidomimetic Inhibitor Pol647
pdb|3AIG|A Chain A, Adamalysin Ii With Peptidomimetic Inhibitor Pol656
Length = 202
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 496 VRLNHHEVETLFHEFGHALHSLLSRTDYQHFSGTRVALDFAETPSNLFEYYAWDYRVLRR 555
+R HE+ + +EF +L+ +S TD + +SG + + + L + W RVL
Sbjct: 29 IRTRVHEIVNIINEFYRSLNIRVSLTDLEIWSGQDFITIQSSSSNTLNSFGEWRERVLLT 88
Query: 556 FAKH 559
+H
Sbjct: 89 RKRH 92
>pdb|4AIG|A Chain A, Adamalysin Ii With Phosphonate Inhibitor
Length = 201
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 496 VRLNHHEVETLFHEFGHALHSLLSRTDYQHFSGTRVALDFAETPSNLFEYYAWDYRVLRR 555
+R HE+ + +EF +L+ +S TD + +SG + + + L + W RVL
Sbjct: 28 IRTRVHEIVNIINEFYRSLNIRVSLTDLEIWSGQDFITIQSSSSNTLNSFGEWRERVLLT 87
Query: 556 FAKH 559
+H
Sbjct: 88 RKRH 91
>pdb|1B5L|A Chain A, Ovine Interferon Tau
Length = 172
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 642 YGAGYYSYLYAKCFAATIWQKLCQEDPLSLTTGTTLRTKILQHGG 686
Y G Y YL K ++ W+ + E +LT TTL+ ++ + GG
Sbjct: 123 YFQGIYDYLQEKGYSDCAWEIVRVEMMRALTVSTTLQKRLTKMGG 167
>pdb|1IAG|A Chain A, First Structure Of A Snake Venom Metalloproteinase: A
Prototype For Matrix
Metalloproteinases(Slash)collagenases
Length = 202
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 496 VRLNHHEVETLFHEFGHALHSLLSRTDYQHFSGTRVALDFAETPSNLFEYYAWDYRVLRR 555
+R HE+ + ++F +L+ +S TD + +SG + + + L + W RVL
Sbjct: 29 IRTRVHEIVNIINKFYRSLNIRVSLTDLEIWSGQDFITIQSSSSNTLNSFGEWRERVLLI 88
Query: 556 FAKH 559
+ +H
Sbjct: 89 WKRH 92
>pdb|9LDT|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDT|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|A Chain A, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
pdb|9LDB|B Chain B, Design And Synthesis Of New Enzymes Based On The Lactate
Dehydrogenase Framework
Length = 332
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 41/93 (44%), Gaps = 15/93 (16%)
Query: 363 KYVHLEPWDEAYYTAMMK---SSAYNLDACVVASYF--------PLGQCIEGLKMLAESL 411
K VH E D AY +K S A L +A P+ I+GL + E++
Sbjct: 228 KAVHKEVVDSAYEVIKLKGYTSWAIGLSVADLAESIMKNLRRVHPISTMIKGLYGIKENV 287
Query: 412 FGVTFHSVPLAPGESWHPDVLKLSLQHPEEGEM 444
F SVP G++ DV+K++L EE +
Sbjct: 288 F----LSVPCILGQNGISDVVKVTLTPEEEAHL 316
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,773,787
Number of Sequences: 62578
Number of extensions: 974733
Number of successful extensions: 2332
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2296
Number of HSP's gapped (non-prelim): 24
length of query: 733
length of database: 14,973,337
effective HSP length: 106
effective length of query: 627
effective length of database: 8,340,069
effective search space: 5229223263
effective search space used: 5229223263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)