Query 037956
Match_columns 245
No_of_seqs 222 out of 1399
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 10:00:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 9.6E-36 3.3E-40 231.5 9.3 103 11-114 1-103 (105)
2 1h8a_C AMV V-MYB, MYB transfor 100.0 1.2E-35 4.2E-40 238.8 9.0 112 2-114 15-126 (128)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 2.4E-35 8.2E-40 230.6 8.0 100 14-114 1-100 (107)
4 3zqc_A MYB3; transcription-DNA 100.0 9.1E-35 3.1E-39 234.9 10.2 100 14-114 2-101 (131)
5 3osg_A MYB21; transcription-DN 100.0 7.2E-35 2.5E-39 234.1 8.8 110 8-119 5-114 (126)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 2.7E-33 9.1E-38 232.6 7.6 110 4-114 48-157 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 4.6E-31 1.6E-35 219.1 6.6 102 11-113 3-105 (159)
8 2dim_A Cell division cycle 5-l 99.9 1.5E-23 5.2E-28 152.0 1.8 68 7-75 2-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 1.6E-21 5.4E-26 156.4 7.0 73 40-113 1-74 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 6.1E-20 2.1E-24 161.0 6.8 106 9-115 3-200 (246)
11 2llk_A Cyclin-D-binding MYB-li 99.8 3.3E-19 1.1E-23 130.7 5.7 59 53-112 9-67 (73)
12 2juh_A Telomere binding protei 99.7 1.1E-18 3.8E-23 139.3 4.0 83 8-91 11-103 (121)
13 2d9a_A B-MYB, MYB-related prot 99.7 9.3E-19 3.2E-23 123.0 2.8 57 9-66 3-59 (60)
14 1gvd_A MYB proto-oncogene prot 99.7 1.3E-18 4.6E-23 118.8 2.3 52 12-64 1-52 (52)
15 2cu7_A KIAA1915 protein; nucle 99.7 1.8E-17 6.1E-22 120.7 7.2 54 61-114 3-56 (72)
16 2roh_A RTBP1, telomere binding 99.7 4.7E-18 1.6E-22 135.8 3.9 79 9-88 26-114 (122)
17 2din_A Cell division cycle 5-l 99.7 2E-17 6.8E-22 118.4 6.7 55 59-114 1-55 (66)
18 1ity_A TRF1; helix-turn-helix, 99.7 3.1E-18 1.1E-22 123.7 2.2 63 8-71 4-68 (69)
19 1guu_A C-MYB, MYB proto-oncoge 99.7 2.5E-18 8.4E-23 117.4 1.4 52 12-64 1-52 (52)
20 2d9a_A B-MYB, MYB-related prot 99.7 1.3E-16 4.4E-21 112.0 7.0 52 62-113 3-55 (60)
21 1guu_A C-MYB, MYB proto-oncoge 99.6 2.2E-16 7.5E-21 107.7 6.6 49 65-113 1-50 (52)
22 3sjm_A Telomeric repeat-bindin 99.6 2.4E-17 8.3E-22 117.8 1.3 55 11-66 8-64 (64)
23 2din_A Cell division cycle 5-l 99.6 1.5E-17 5E-22 119.1 -0.5 61 6-69 1-61 (66)
24 1x41_A Transcriptional adaptor 99.6 4.7E-17 1.6E-21 114.6 2.0 55 9-64 3-57 (60)
25 1gvd_A MYB proto-oncogene prot 99.6 4.3E-16 1.5E-20 106.3 6.8 49 65-113 1-50 (52)
26 1w0t_A Telomeric repeat bindin 99.6 4.4E-16 1.5E-20 106.8 6.7 49 66-114 1-52 (53)
27 1x41_A Transcriptional adaptor 99.6 7.7E-16 2.6E-20 108.3 6.4 52 62-113 3-55 (60)
28 1w0t_A Telomeric repeat bindin 99.6 1.1E-16 3.8E-21 109.8 1.2 49 13-62 1-51 (53)
29 1ity_A TRF1; helix-turn-helix, 99.6 2E-15 6.7E-20 108.9 7.4 55 60-114 3-60 (69)
30 2dim_A Cell division cycle 5-l 99.6 1.8E-15 6E-20 109.4 7.1 52 62-113 4-56 (70)
31 2elk_A SPCC24B10.08C protein; 99.6 2.1E-16 7.1E-21 110.6 2.1 52 9-61 4-56 (58)
32 2yum_A ZZZ3 protein, zinc fing 99.6 1.3E-16 4.5E-21 116.7 1.0 61 8-69 2-67 (75)
33 2ltp_A Nuclear receptor corepr 99.4 1.7E-16 5.9E-21 120.2 0.0 60 59-118 8-67 (89)
34 2cu7_A KIAA1915 protein; nucle 99.6 3E-16 1E-20 114.2 1.0 59 7-67 2-60 (72)
35 2yum_A ZZZ3 protein, zinc fing 99.6 4.1E-15 1.4E-19 108.7 5.8 53 62-114 3-61 (75)
36 2elk_A SPCC24B10.08C protein; 99.5 7.5E-15 2.6E-19 102.6 6.6 50 63-112 5-56 (58)
37 3sjm_A Telomeric repeat-bindin 99.5 7.9E-15 2.7E-19 104.7 6.8 49 65-113 9-60 (64)
38 2llk_A Cyclin-D-binding MYB-li 99.5 3.3E-15 1.1E-19 109.4 2.3 61 2-66 11-71 (73)
39 3zqc_A MYB3; transcription-DNA 99.5 3E-15 1E-19 120.3 -0.6 86 5-96 45-130 (131)
40 2cqr_A RSGI RUH-043, DNAJ homo 99.5 7.1E-14 2.4E-18 102.3 6.3 51 63-113 14-68 (73)
41 2aje_A Telomere repeat-binding 99.5 2.3E-14 8E-19 111.7 3.3 78 8-86 7-94 (105)
42 2ckx_A NGTRF1, telomere bindin 99.4 4.5E-14 1.5E-18 105.8 3.8 69 15-84 1-79 (83)
43 2yus_A SWI/SNF-related matrix- 99.4 5.3E-14 1.8E-18 104.4 3.4 53 7-61 11-63 (79)
44 1x58_A Hypothetical protein 49 99.4 4E-13 1.4E-17 95.0 6.4 49 66-114 7-58 (62)
45 2yus_A SWI/SNF-related matrix- 99.4 2.6E-13 9.1E-18 100.6 5.4 49 63-111 14-62 (79)
46 2ltp_A Nuclear receptor corepr 99.1 2.8E-14 9.7E-19 108.0 0.0 56 6-63 8-63 (89)
47 2ckx_A NGTRF1, telomere bindin 99.4 8.2E-13 2.8E-17 98.9 6.9 50 68-117 1-55 (83)
48 1gv2_A C-MYB, MYB proto-oncoge 99.4 7.5E-13 2.6E-17 102.1 6.8 50 64-113 1-51 (105)
49 3osg_A MYB21; transcription-DN 99.4 1.1E-12 3.6E-17 104.8 7.3 52 62-113 6-57 (126)
50 2cqr_A RSGI RUH-043, DNAJ homo 99.3 1.7E-13 6E-18 100.2 1.1 57 5-62 9-68 (73)
51 2juh_A Telomere binding protei 99.3 1.8E-12 6.1E-17 103.4 6.3 57 61-117 11-72 (121)
52 2aje_A Telomere repeat-binding 99.3 2.5E-12 8.4E-17 100.2 6.9 55 62-116 8-67 (105)
53 1ign_A Protein (RAP1); RAP1,ye 99.3 1.4E-12 4.9E-17 114.3 5.9 52 63-114 4-61 (246)
54 2cjj_A Radialis; plant develop 99.3 4.7E-12 1.6E-16 96.6 7.3 53 66-118 7-63 (93)
55 2k9n_A MYB24; R2R3 domain, DNA 99.3 4.2E-12 1.4E-16 98.5 6.4 47 67-113 1-48 (107)
56 2roh_A RTBP1, telomere binding 99.2 1E-11 3.5E-16 99.1 6.8 55 62-116 26-85 (122)
57 3hm5_A DNA methyltransferase 1 99.1 1.1E-10 3.9E-15 88.9 5.8 61 50-114 17-82 (93)
58 2eqr_A N-COR1, N-COR, nuclear 99.1 2.1E-10 7.1E-15 80.7 6.5 48 66-113 11-58 (61)
59 2cjj_A Radialis; plant develop 99.0 4.2E-11 1.4E-15 91.4 0.1 48 13-61 7-57 (93)
60 2cqq_A RSGI RUH-037, DNAJ homo 98.9 2E-09 7E-14 78.3 6.0 49 64-113 5-57 (72)
61 2iw5_B Protein corest, REST co 98.9 3.6E-09 1.2E-13 92.1 7.1 51 66-116 132-182 (235)
62 2eqr_A N-COR1, N-COR, nuclear 98.8 1.8E-09 6.1E-14 75.9 2.6 52 7-60 5-56 (61)
63 1x58_A Hypothetical protein 49 98.8 1.1E-09 3.8E-14 77.4 1.3 48 13-62 7-57 (62)
64 1wgx_A KIAA1903 protein; MYB D 98.7 2.7E-08 9.2E-13 72.6 5.9 48 67-114 8-59 (73)
65 2xag_B REST corepressor 1; ami 98.6 3.1E-08 1E-12 94.8 6.0 47 68-114 381-427 (482)
66 2cqq_A RSGI RUH-037, DNAJ homo 98.6 7.9E-09 2.7E-13 75.2 0.2 50 11-62 5-57 (72)
67 1fex_A TRF2-interacting telome 98.5 1E-07 3.5E-12 66.6 5.3 47 67-113 2-58 (59)
68 1fex_A TRF2-interacting telome 98.5 1.4E-08 4.9E-13 71.0 0.5 48 14-62 2-58 (59)
69 2iw5_B Protein corest, REST co 98.4 1.2E-07 4.3E-12 82.5 2.4 49 12-62 131-179 (235)
70 1wgx_A KIAA1903 protein; MYB D 98.3 1.6E-07 5.5E-12 68.4 1.9 48 14-62 8-58 (73)
71 1ug2_A 2610100B20RIK gene prod 98.3 9.2E-07 3.1E-11 66.7 5.5 45 69-113 35-82 (95)
72 2yqk_A Arginine-glutamic acid 98.2 3.2E-06 1.1E-10 59.6 6.9 50 62-111 4-54 (63)
73 2lr8_A CAsp8-associated protei 97.4 3E-07 1E-11 65.8 0.0 44 69-113 16-62 (70)
74 4eef_G F-HB80.4, designed hema 98.1 5.6E-07 1.9E-11 65.4 0.0 43 67-109 20-66 (74)
75 4iej_A DNA methyltransferase 1 98.0 9.6E-06 3.3E-10 61.5 6.7 55 56-114 23-82 (93)
76 1ofc_X ISWI protein; nuclear p 98.0 5.9E-06 2E-10 75.0 6.4 98 15-113 111-274 (304)
77 4a69_C Nuclear receptor corepr 97.9 2.5E-05 8.6E-10 59.3 6.2 46 67-112 43-88 (94)
78 2yqk_A Arginine-glutamic acid 97.9 6.4E-06 2.2E-10 58.0 2.6 50 7-58 2-52 (63)
79 4eef_G F-HB80.4, designed hema 97.9 2.8E-06 9.6E-11 61.7 0.7 44 14-58 20-66 (74)
80 2crg_A Metastasis associated p 97.8 6.2E-05 2.1E-09 54.0 6.5 44 67-110 8-52 (70)
81 2xag_B REST corepressor 1; ami 97.5 2.8E-05 9.5E-10 74.5 2.3 49 12-62 378-426 (482)
82 2ebi_A DNA binding protein GT- 97.2 0.00044 1.5E-08 51.0 4.7 48 67-114 4-65 (86)
83 3hm5_A DNA methyltransferase 1 97.2 0.00011 3.6E-09 55.9 1.3 48 14-62 30-81 (93)
84 4a69_C Nuclear receptor corepr 97.0 0.00018 6.1E-09 54.5 1.2 43 14-58 43-85 (94)
85 2crg_A Metastasis associated p 97.0 0.00022 7.5E-09 51.1 1.3 43 14-58 8-51 (70)
86 2ebi_A DNA binding protein GT- 96.9 6.4E-05 2.2E-09 55.5 -1.9 49 13-61 3-63 (86)
87 4b4c_A Chromodomain-helicase-D 96.9 0.0021 7.3E-08 54.3 7.3 46 68-113 135-195 (211)
88 2y9y_A Imitation switch protei 96.8 0.0015 5.1E-08 60.7 6.1 99 15-113 124-290 (374)
89 2lr8_A CAsp8-associated protei 95.4 0.00055 1.9E-08 48.9 0.0 47 14-62 14-62 (70)
90 1ug2_A 2610100B20RIK gene prod 96.3 0.0012 4E-08 49.8 1.5 49 10-59 29-79 (95)
91 1irz_A ARR10-B; helix-turn-hel 94.1 0.15 5E-06 35.9 6.3 46 66-111 6-56 (64)
92 1ofc_X ISWI protein; nuclear p 94.0 0.093 3.2E-06 47.5 6.4 46 68-113 111-157 (304)
93 4iej_A DNA methyltransferase 1 93.0 0.03 1E-06 42.2 1.3 49 13-62 29-81 (93)
94 4b4c_A Chromodomain-helicase-D 92.8 0.14 4.9E-06 42.9 5.5 48 66-113 6-58 (211)
95 2xb0_X Chromo domain-containin 89.3 0.32 1.1E-05 43.2 4.3 28 15-42 169-196 (270)
96 1irz_A ARR10-B; helix-turn-hel 89.2 0.14 4.8E-06 36.0 1.5 48 11-59 4-55 (64)
97 2xb0_X Chromo domain-containin 81.0 3.4 0.00012 36.5 6.8 47 67-113 3-54 (270)
98 2o8x_A Probable RNA polymerase 73.7 5.3 0.00018 26.4 4.6 40 73-113 18-57 (70)
99 2li6_A SWI/SNF chromatin-remod 71.1 3.2 0.00011 31.8 3.3 37 77-113 53-97 (116)
100 2jrz_A Histone demethylase jar 70.2 6.8 0.00023 30.0 5.1 37 77-113 44-92 (117)
101 2lm1_A Lysine-specific demethy 69.8 7.4 0.00025 29.0 5.1 37 77-113 48-96 (107)
102 1ku3_A Sigma factor SIGA; heli 69.4 7.4 0.00025 26.4 4.7 41 73-114 13-57 (73)
103 2rq5_A Protein jumonji; develo 68.9 35 0.0012 26.3 9.0 76 12-113 5-95 (121)
104 2eqy_A RBP2 like, jumonji, at 66.5 8.8 0.0003 29.6 5.0 37 77-113 46-94 (122)
105 2p7v_B Sigma-70, RNA polymeras 66.3 7.5 0.00026 26.0 4.1 40 74-114 9-52 (68)
106 2cxy_A BAF250B subunit, HBAF25 65.8 9.1 0.00031 29.5 5.0 37 77-113 55-103 (125)
107 3hug_A RNA polymerase sigma fa 62.8 11 0.00037 26.8 4.6 41 73-114 40-80 (92)
108 1kkx_A Transcription regulator 62.1 4.8 0.00016 31.3 2.7 37 77-113 52-96 (123)
109 2y9y_A Imitation switch protei 59.5 17 0.00058 33.5 6.3 46 68-113 124-171 (374)
110 2jxj_A Histone demethylase jar 58.8 6.3 0.00022 28.8 2.8 37 77-113 40-88 (96)
111 2kk0_A AT-rich interactive dom 56.7 16 0.00054 29.0 5.0 37 77-113 68-117 (145)
112 1c20_A DEAD ringer protein; DN 55.7 18 0.00061 27.9 5.1 37 77-113 56-105 (128)
113 1ig6_A MRF-2, modulator recogn 52.8 9.2 0.00032 28.6 2.9 37 77-113 37-86 (107)
114 1x3u_A Transcriptional regulat 52.3 31 0.0011 23.1 5.4 42 70-114 17-58 (79)
115 1or7_A Sigma-24, RNA polymeras 51.7 24 0.00083 27.5 5.4 30 84-114 154-183 (194)
116 2yqf_A Ankyrin-1; death domain 51.0 25 0.00086 26.2 5.1 35 71-106 14-48 (111)
117 2rq5_A Protein jumonji; develo 50.9 4.2 0.00014 31.6 0.6 58 23-83 45-113 (121)
118 1tty_A Sigma-A, RNA polymerase 50.6 22 0.00074 25.0 4.5 40 74-114 22-65 (87)
119 2li6_A SWI/SNF chromatin-remod 46.5 3.4 0.00012 31.6 -0.5 39 24-63 53-98 (116)
120 2of5_H Leucine-rich repeat and 46.0 24 0.0008 26.8 4.3 31 75-106 13-43 (118)
121 3c57_A Two component transcrip 45.7 34 0.0012 24.4 5.0 43 69-114 27-69 (95)
122 1xsv_A Hypothetical UPF0122 pr 45.6 38 0.0013 25.2 5.4 40 74-114 29-68 (113)
123 1je8_A Nitrate/nitrite respons 45.1 33 0.0011 23.8 4.7 43 69-114 21-63 (82)
124 1fse_A GERE; helix-turn-helix 44.0 38 0.0013 22.2 4.7 43 68-113 10-52 (74)
125 3cz6_A DNA-binding protein RAP 43.9 15 0.00052 30.2 3.0 25 10-34 110-142 (168)
126 3mzy_A RNA polymerase sigma-H 43.8 29 0.001 25.9 4.6 30 84-114 122-151 (164)
127 2o71_A Death domain-containing 43.7 29 0.001 26.4 4.5 29 77-106 26-54 (115)
128 3ulq_B Transcriptional regulat 43.4 48 0.0016 23.6 5.4 45 67-114 27-71 (90)
129 2of5_A Death domain-containing 43.0 28 0.00094 26.5 4.2 29 77-106 26-54 (114)
130 1rp3_A RNA polymerase sigma fa 42.3 39 0.0013 27.0 5.3 37 77-114 194-230 (239)
131 1wxp_A THO complex subunit 1; 39.0 37 0.0013 25.2 4.4 31 75-106 18-48 (110)
132 3e7l_A Transcriptional regulat 36.2 62 0.0021 21.3 4.7 33 73-106 19-51 (63)
133 2q1z_A RPOE, ECF SIGE; ECF sig 36.2 15 0.00051 28.5 1.8 30 84-114 149-178 (184)
134 2jpc_A SSRB; DNA binding prote 35.8 50 0.0017 20.8 4.2 38 75-114 3-40 (61)
135 2rnj_A Response regulator prot 31.3 39 0.0013 23.7 3.2 42 70-114 30-71 (91)
136 1s7o_A Hypothetical UPF0122 pr 31.0 76 0.0026 23.6 5.0 40 74-114 26-65 (113)
137 2k27_A Paired box protein PAX- 30.2 1.8E+02 0.0061 22.0 8.9 66 15-85 24-99 (159)
138 3i4p_A Transcriptional regulat 30.1 54 0.0018 25.6 4.2 41 73-114 3-44 (162)
139 1fad_A Protein (FADD protein); 28.6 39 0.0013 24.4 2.8 30 76-106 15-44 (99)
140 1ntc_A Protein (nitrogen regul 28.1 78 0.0027 22.4 4.4 33 73-106 51-83 (91)
141 1p4w_A RCSB; solution structur 27.5 1.2E+02 0.004 22.0 5.4 45 67-114 32-76 (99)
142 1k78_A Paired box protein PAX5 25.8 1.8E+02 0.0062 21.7 6.5 41 67-109 30-70 (149)
143 1k78_A Paired box protein PAX5 25.2 2.1E+02 0.0073 21.2 7.3 77 15-96 31-118 (149)
144 3t72_q RNA polymerase sigma fa 25.1 1.2E+02 0.004 22.2 5.0 28 86-114 39-66 (99)
145 1ngr_A P75 low affinity neurot 24.2 44 0.0015 23.9 2.4 29 72-106 12-40 (85)
146 2dbb_A Putative HTH-type trans 24.1 1.5E+02 0.0051 22.3 5.7 41 73-114 9-50 (151)
147 1tc3_C Protein (TC3 transposas 23.9 1.1E+02 0.0038 17.5 5.6 38 69-108 5-42 (51)
148 3clo_A Transcriptional regulat 22.4 98 0.0033 25.8 4.6 43 69-114 197-239 (258)
149 1umq_A Photosynthetic apparatu 22.0 1.1E+02 0.0039 21.6 4.2 34 72-106 40-73 (81)
150 2p1m_A SKP1-like protein 1A; F 22.0 32 0.0011 27.3 1.3 36 38-81 119-154 (160)
151 2ib1_A Death domain containing 21.7 32 0.0011 25.0 1.2 33 72-106 5-37 (91)
152 1u78_A TC3 transposase, transp 20.9 2.4E+02 0.0082 20.3 7.9 88 15-108 5-100 (141)
153 2e1c_A Putative HTH-type trans 20.4 1.4E+02 0.0047 23.5 4.9 41 73-114 27-68 (171)
154 1l0o_C Sigma factor; bergerat 20.1 22 0.00075 28.5 0.0 29 84-113 212-240 (243)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=9.6e-36 Score=231.47 Aligned_cols=103 Identities=49% Similarity=0.939 Sum_probs=99.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCcHH
Q 037956 11 SLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWS 90 (245)
Q Consensus 11 ~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~ 90 (245)
.+++|+||+|||++|+.+|..||.++|..||++|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||++|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcC-CCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 478999999999999999999998899999999998 9999999999999999999999999999999999999999999
Q ss_pred HHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 91 AIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 91 ~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
.||++|||||+++|++||+.++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC-
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999984
No 2
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=1.2e-35 Score=238.77 Aligned_cols=112 Identities=45% Similarity=0.876 Sum_probs=103.0
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHH
Q 037956 2 VKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKL 81 (245)
Q Consensus 2 ~R~~~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~l 81 (245)
.|+...++|++++|+||+|||++|+.+|..||.++|..||.+|++ |+++||++||.++|+|.+++++||+|||++|+++
T Consensus 15 ~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~ 93 (128)
T 1h8a_C 15 HRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQA 93 (128)
T ss_dssp -------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSS-CCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHH
T ss_pred HHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcC-CcHHHHHHHHHHhcccccccccCCHHHHHHHHHH
Confidence 366778999999999999999999999999998899999999998 9999999999999999999999999999999999
Q ss_pred HHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 82 HEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 82 v~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
|.+||++|..||++|||||+++|++||+.++++
T Consensus 94 ~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 94 HKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp HHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC
T ss_pred HHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999984
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=2.4e-35 Score=230.61 Aligned_cols=100 Identities=33% Similarity=0.626 Sum_probs=97.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHh
Q 037956 14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIA 93 (245)
Q Consensus 14 kg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA 93 (245)
||+||+|||++|+.+|..||..+|..||..|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||++|..||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMIT-RNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTT-SCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCC-CCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 689999999999999999998899999999998 9999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHhhhh
Q 037956 94 SRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 94 ~~lpgRT~~~~Knrw~~~lkk 114 (245)
++|||||+++|++||+.++++
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999998874
No 4
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=9.1e-35 Score=234.86 Aligned_cols=100 Identities=44% Similarity=0.806 Sum_probs=98.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHh
Q 037956 14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIA 93 (245)
Q Consensus 14 kg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA 93 (245)
||+||+|||++|+.+|..||.++|..||.+|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia 80 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA 80 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTT-SCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCC-CCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 799999999999999999998899999999998 9999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHhhhh
Q 037956 94 SRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 94 ~~lpgRT~~~~Knrw~~~lkk 114 (245)
++|||||+++|++||+.+|++
T Consensus 81 ~~l~gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 81 KLIPGRTDNAIKNRWNSSISK 101 (131)
T ss_dssp TTSTTCCHHHHHHHHHHTTGG
T ss_pred HHcCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999984
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=7.2e-35 Score=234.14 Aligned_cols=110 Identities=34% Similarity=0.619 Sum_probs=102.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 037956 8 EKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGN 87 (245)
Q Consensus 8 ~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~ 87 (245)
.+++.+||+||+|||++|+.+|..||. +|..||+.|++ |+++||++||.++|+|.+++++||+|||++|+++|.+||+
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~ 82 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPN-RNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGR 82 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTT-CCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 467889999999999999999999998 99999999998 9999999999999999999999999999999999999999
Q ss_pred cHHHHhhhCCCCCHHHHHHHHHHhhhhhhhhh
Q 037956 88 RWSAIASRLPGRTDNEIKNHWHSRLSKKRLTK 119 (245)
Q Consensus 88 kW~~IA~~lpgRT~~~~Knrw~~~lkkk~~~k 119 (245)
+|..||++|||||+++|++||+.++++..+..
T Consensus 83 ~W~~Ia~~l~gRt~~~~k~rw~~l~~k~~~p~ 114 (126)
T 3osg_A 83 QWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQ 114 (126)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHHHHHHTTC--
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999998654443
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.98 E-value=2.7e-33 Score=232.64 Aligned_cols=110 Identities=46% Similarity=0.876 Sum_probs=105.7
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHH
Q 037956 4 AGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHE 83 (245)
Q Consensus 4 ~~~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~ 83 (245)
+...++|++++|+||+|||++|+.+|..||..+|..||.+|++ |+++||+.||.++|+|.+++++||+|||.+|++++.
T Consensus 48 w~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~ 126 (159)
T 1h89_C 48 WQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHK 126 (159)
T ss_dssp HHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTT-CCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHH
T ss_pred HHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCC-CCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHH
Confidence 3456899999999999999999999999998789999999998 999999999999999999999999999999999999
Q ss_pred HhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 84 QLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 84 ~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
+||++|..||++|||||+++|||||+.++++
T Consensus 127 ~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 127 RLGNRWAEIAKLLPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp HHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC
T ss_pred HHCCCHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999984
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.96 E-value=4.6e-31 Score=219.12 Aligned_cols=102 Identities=37% Similarity=0.764 Sum_probs=60.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC-cH
Q 037956 11 SLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGN-RW 89 (245)
Q Consensus 11 ~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~-kW 89 (245)
++++++||+|||++|+++|..||.++|..||..|++ |+++||++||.++|+|.+++++||+|||++|+++|..||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 467899999999999999999998899999999998 9999999999999999999999999999999999999996 69
Q ss_pred HHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 90 SAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 90 ~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
..||.+|||||+.+|++||+++|.
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLN 105 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhC
Confidence 999999999999999999999986
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.5e-23 Score=152.04 Aligned_cols=68 Identities=28% Similarity=0.616 Sum_probs=65.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHH
Q 037956 7 SEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEED 75 (245)
Q Consensus 7 ~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED 75 (245)
+..|++++|+||+|||++|+.+|.+||.++|..||.+|++ |+++|||+||.++|+|.+++++||+|||
T Consensus 2 ss~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~-Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 2 SSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHR-KSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CSCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTT-CCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcC-CCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 4578999999999999999999999998899999999998 9999999999999999999999999997
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.84 E-value=1.6e-21 Score=156.36 Aligned_cols=73 Identities=34% Similarity=0.747 Sum_probs=50.5
Q ss_pred ccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 40 MPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGN-RWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 40 Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
||+.|++ |+++||+.||.++|+|.+++++||+|||++|+++|.+||. +|..||..|||||+.+|++||+.+|.
T Consensus 1 Ia~~~~~-Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 1 MEAVIKN-RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLN 74 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTC
T ss_pred CccccCC-CCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcc
Confidence 7889998 9999999999999999999999999999999999999996 69999999999999999999999886
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.79 E-value=6.1e-20 Score=160.95 Aligned_cols=106 Identities=24% Similarity=0.367 Sum_probs=92.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCC-----CcccccccccCccccccccccccccccCCCC-----------------
Q 037956 9 KPSLRKGSWTPEEDRKLIAYIRRYGIW-----NWSEMPKYAGLLRCGKSCRLRWMNYLRPDIR----------------- 66 (245)
Q Consensus 9 kp~lkkg~WT~EEDe~L~~~V~~~g~~-----nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~----------------- 66 (245)
.+.++|++||+|||++|+++|.+||.. .|..||++|++ ||+.|||.||..+|.+.+.
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpG-RT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPN-HTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTT-SCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCC-CCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 356789999999999999999999764 29999999998 9999999999999999996
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 037956 67 ------------RGNFTQEEDETIIKLHEQ-L--------------------------------GN-------------- 87 (245)
Q Consensus 67 ------------k~~WT~EED~~Ll~lv~~-~--------------------------------G~-------------- 87 (245)
+..||.+||..|...+.+ | |.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999999876 1 21
Q ss_pred -----------cHHHHhhhCCCCCHHHHHHHHHHhhhhh
Q 037956 88 -----------RWSAIASRLPGRTDNEIKNHWHSRLSKK 115 (245)
Q Consensus 88 -----------kW~~IA~~lpgRT~~~~Knrw~~~lkkk 115 (245)
.|..||+.+|+||.+++|+||..+|+..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999999743
No 11
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.77 E-value=3.3e-19 Score=130.74 Aligned_cols=59 Identities=24% Similarity=0.392 Sum_probs=47.4
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhh
Q 037956 53 CRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRL 112 (245)
Q Consensus 53 Cr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~l 112 (245)
..-||.++|+|++++++||+|||++|+++|.+||++|+.||+.| |||+++||+||+.+.
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~ 67 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMK 67 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCS
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999 999999999999654
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.73 E-value=1.1e-18 Score=139.29 Aligned_cols=83 Identities=16% Similarity=0.284 Sum_probs=78.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc----cCcccccccccccccccc-----CCCCCC-CCCHHHHHH
Q 037956 8 EKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYA----GLLRCGKSCRLRWMNYLR-----PDIRRG-NFTQEEDET 77 (245)
Q Consensus 8 ~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~----~~~Rt~kqCr~Rw~n~L~-----p~i~k~-~WT~EED~~ 77 (245)
..+..++++||+|||+.|+.+|.+||.++|..|++.+ ++ |++.||++||.++++ |.++++ +|+++|+..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~-RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~r 89 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDR 89 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSS-CCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCC-CCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHH
Confidence 5678899999999999999999999999999999985 66 999999999999998 999999 999999999
Q ss_pred HHHHHHHhCCcHHH
Q 037956 78 IIKLHEQLGNRWSA 91 (245)
Q Consensus 78 Ll~lv~~~G~kW~~ 91 (245)
|+.++..||++|.+
T Consensus 90 v~~~h~~~gn~~~~ 103 (121)
T 2juh_A 90 VLAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHccchhc
Confidence 99999999999976
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=9.3e-19 Score=123.01 Aligned_cols=57 Identities=30% Similarity=0.547 Sum_probs=54.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCC
Q 037956 9 KPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIR 66 (245)
Q Consensus 9 kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~ 66 (245)
.|++++++||+|||++|+++|..||..+|..||++|++ |++.||+.||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPN-RTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSS-SCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccC-CCHHHHHHHHHHHcCCccC
Confidence 58899999999999999999999997799999999998 9999999999999999875
No 14
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.72 E-value=1.3e-18 Score=118.84 Aligned_cols=52 Identities=48% Similarity=0.896 Sum_probs=49.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCC
Q 037956 12 LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD 64 (245)
Q Consensus 12 lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ 64 (245)
+++|+||+|||++|+++|..||..+|..||+.|++ |+++||+.||.++|+|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTT-CCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 57899999999999999999998889999999998 99999999999999984
No 15
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.70 E-value=1.8e-17 Score=120.70 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=52.1
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 61 LRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 61 L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
++|.+++++||+|||++|+++|.+||++|..||.+|||||+++||+||+.+|++
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999999999984
No 16
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.70 E-value=4.7e-18 Score=135.82 Aligned_cols=79 Identities=16% Similarity=0.250 Sum_probs=72.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc----cCccccccccccccccc-----cCCCCCCCCCHHH-HHHH
Q 037956 9 KPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYA----GLLRCGKSCRLRWMNYL-----RPDIRRGNFTQEE-DETI 78 (245)
Q Consensus 9 kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~----~~~Rt~kqCr~Rw~n~L-----~p~i~k~~WT~EE-D~~L 78 (245)
....++++||+|||+.|+++|++||.++|..|++.+ ++ |++.||++||.|++ +|.++++.|+++| +..|
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~-RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v 104 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHH-RTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV 104 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCC-CCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence 345678999999999999999999999999999974 55 99999999999999 8999999999999 8999
Q ss_pred HHHHHHhCCc
Q 037956 79 IKLHEQLGNR 88 (245)
Q Consensus 79 l~lv~~~G~k 88 (245)
+.++..||++
T Consensus 105 ~~~h~~~g~~ 114 (122)
T 2roh_A 105 LAAQAYWSVD 114 (122)
T ss_dssp HHHHHHHHSS
T ss_pred HHHHHHHhhH
Confidence 9999999974
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=118.38 Aligned_cols=55 Identities=24% Similarity=0.466 Sum_probs=52.7
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 59 NYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 59 n~L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
.+|+|.+++++||+|||++|+++|..||++|..||+ |+|||+.||++||+.+|+.
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~ 55 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDK 55 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhCh
Confidence 379999999999999999999999999999999999 8899999999999999983
No 18
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.70 E-value=3.1e-18 Score=123.71 Aligned_cols=63 Identities=22% Similarity=0.379 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc--CccccccccccccccccCCCCCCCCC
Q 037956 8 EKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAG--LLRCGKSCRLRWMNYLRPDIRRGNFT 71 (245)
Q Consensus 8 ~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~--~~Rt~kqCr~Rw~n~L~p~i~k~~WT 71 (245)
.+|..++++||+|||++|+.+|..||.++|..||.+|+ + |++.||++||.++|+|.+.++...
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCC-CCHHHHHHHHHHHcCCCCCCCCCC
Confidence 46788999999999999999999999889999999999 7 999999999999999999988754
No 19
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.69 E-value=2.5e-18 Score=117.43 Aligned_cols=52 Identities=35% Similarity=0.695 Sum_probs=48.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCC
Q 037956 12 LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD 64 (245)
Q Consensus 12 lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ 64 (245)
+++++||+|||++|+++|..||.++|..||++|++ |++.||+.||.++|+|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPN-RTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTT-CCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCC-CCHHHHHHHHHHHcCcC
Confidence 47899999999999999999998899999999998 99999999999999985
No 20
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=1.3e-16 Score=111.98 Aligned_cols=52 Identities=35% Similarity=0.598 Sum_probs=49.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 62 RPDIRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 62 ~p~i~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
+|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcC
Confidence 5789999999999999999999999 699999999999999999999999987
No 21
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.65 E-value=2.2e-16 Score=107.69 Aligned_cols=49 Identities=41% Similarity=0.727 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 65 IRRGNFTQEEDETIIKLHEQLGN-RWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 65 i~k~~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
+++++||+|||++|+++|.+||. +|..||++|+|||+.||++||+++|+
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998 99999999999999999999999886
No 22
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.64 E-value=2.4e-17 Score=117.80 Aligned_cols=55 Identities=27% Similarity=0.434 Sum_probs=49.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc--CccccccccccccccccCCCC
Q 037956 11 SLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAG--LLRCGKSCRLRWMNYLRPDIR 66 (245)
Q Consensus 11 ~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~--~~Rt~kqCr~Rw~n~L~p~i~ 66 (245)
..+|++||+|||++|+++|.+||.++|..||+.++ + |++.||++||.++++|.++
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVN-RTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCC-CCHHHHHHHHHHHhccCCC
Confidence 35789999999999999999999989999999865 5 9999999999999998764
No 23
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.5e-17 Score=119.06 Aligned_cols=61 Identities=23% Similarity=0.382 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCC
Q 037956 6 GSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGN 69 (245)
Q Consensus 6 ~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~ 69 (245)
++++|.+++++||+|||++|+.+|..||. +|..||+ +++ |+++||+.||.++|+|.++++.
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~g-Rt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIG-RTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHS-SCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccC-cCHHHHHHHHHHHhChHhcCCC
Confidence 36899999999999999999999999998 9999999 666 9999999999999999877653
No 24
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=4.7e-17 Score=114.57 Aligned_cols=55 Identities=22% Similarity=0.472 Sum_probs=51.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCC
Q 037956 9 KPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPD 64 (245)
Q Consensus 9 kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~ 64 (245)
-|.+.+++||+|||++|+++|..||.++|..||++|++ |+++||+.||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~-Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCT-KTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTT-SCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCC-CCHHHHHHHHHHHccCC
Confidence 36789999999999999999999997799999999998 99999999999999864
No 25
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.63 E-value=4.3e-16 Score=106.30 Aligned_cols=49 Identities=41% Similarity=0.853 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 65 IRRGNFTQEEDETIIKLHEQLGN-RWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 65 i~k~~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
+++++||+|||++|+++|.+||. +|..||.+|+|||+.||++||.++|+
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999997 69999999999999999999999885
No 26
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.63 E-value=4.4e-16 Score=106.82 Aligned_cols=49 Identities=24% Similarity=0.426 Sum_probs=46.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCC--CCCHHHHHHHHHHhhhh
Q 037956 66 RRGNFTQEEDETIIKLHEQLG-NRWSAIASRLP--GRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 66 ~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~~~Knrw~~~lkk 114 (245)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999999874
No 27
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.61 E-value=7.7e-16 Score=108.29 Aligned_cols=52 Identities=17% Similarity=0.378 Sum_probs=49.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 62 RPDIRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 62 ~p~i~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
.+.+.+++||+|||++|+++|.+|| ++|..||++|+|||+.||++||+.+|.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 4678899999999999999999999 799999999999999999999999886
No 28
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.60 E-value=1.1e-16 Score=109.82 Aligned_cols=49 Identities=29% Similarity=0.501 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccccc--Ccccccccccccccccc
Q 037956 13 RKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAG--LLRCGKSCRLRWMNYLR 62 (245)
Q Consensus 13 kkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~--~~Rt~kqCr~Rw~n~L~ 62 (245)
++++||+|||++|+.+|..||.++|..||..++ + |++.||++||.+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~-Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN-RTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSS-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCC-CCHHHHHHHHHHHHc
Confidence 579999999999999999999889999999999 7 999999999999875
No 29
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.60 E-value=2e-15 Score=108.91 Aligned_cols=55 Identities=22% Similarity=0.333 Sum_probs=51.1
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCC--CCCHHHHHHHHHHhhhh
Q 037956 60 YLRPDIRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLP--GRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 60 ~L~p~i~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~~~Knrw~~~lkk 114 (245)
...+..++++||+|||++|+++|.+|| ++|..||.+|+ |||+.||++||+++|+.
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 456778899999999999999999999 69999999999 99999999999999983
No 30
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.8e-15 Score=109.38 Aligned_cols=52 Identities=29% Similarity=0.471 Sum_probs=49.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 62 RPDIRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 62 ~p~i~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
.|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence 4778999999999999999999999 799999999999999999999999997
No 31
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.59 E-value=2.1e-16 Score=110.62 Aligned_cols=52 Identities=25% Similarity=0.540 Sum_probs=47.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCccccccccc-Cccccccccccccccc
Q 037956 9 KPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAG-LLRCGKSCRLRWMNYL 61 (245)
Q Consensus 9 kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~-~~Rt~kqCr~Rw~n~L 61 (245)
...+.+++||+|||++|+++|.+||.++|..||++|+ + |+++|||.||.+++
T Consensus 4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~-Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNA-RTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSS-CCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCC-CCHHHHHHHHHHHc
Confidence 3456789999999999999999999889999999999 6 99999999999875
No 32
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.3e-16 Score=116.72 Aligned_cols=61 Identities=23% Similarity=0.339 Sum_probs=56.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCC-----CCcccccccccCccccccccccccccccCCCCCCC
Q 037956 8 EKPSLRKGSWTPEEDRKLIAYIRRYGI-----WNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGN 69 (245)
Q Consensus 8 ~kp~lkkg~WT~EEDe~L~~~V~~~g~-----~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~ 69 (245)
-+|++.+++||+|||++|+++|..||. .+|..||++|++ |+++||+.||++||.+.++.|.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~-Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGN-RTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSS-SCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhcCC
Confidence 478999999999999999999999996 689999999998 9999999999999998877663
No 33
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.35 E-value=1.7e-16 Score=120.21 Aligned_cols=60 Identities=27% Similarity=0.303 Sum_probs=55.2
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhhhhhh
Q 037956 59 NYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKRLT 118 (245)
Q Consensus 59 n~L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkkk~~~ 118 (245)
..+.|.+++++||.|||++|+++|.+||++|..||.+|+|||+++|++||+.+|++..+.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l~ 67 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLD 67 (89)
Confidence 356789999999999999999999999999999999999999999999999999865443
No 34
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.57 E-value=3e-16 Score=114.19 Aligned_cols=59 Identities=20% Similarity=0.340 Sum_probs=55.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCC
Q 037956 7 SEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRR 67 (245)
Q Consensus 7 ~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k 67 (245)
+..|.+++++||+|||++|+.+|..||. +|..||++|++ |++.||+.||.++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~-Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGS-RTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSS-SCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHHhc
Confidence 5689999999999999999999999998 99999999998 99999999999999877665
No 35
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=4.1e-15 Score=108.69 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=50.1
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC------CcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 62 RPDIRRGNFTQEEDETIIKLHEQLG------NRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 62 ~p~i~k~~WT~EED~~Ll~lv~~~G------~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
+|.+.+++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+.+|.+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 5788999999999999999999999 7899999999999999999999988873
No 36
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.55 E-value=7.5e-15 Score=102.65 Aligned_cols=50 Identities=26% Similarity=0.452 Sum_probs=46.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCC-CCCHHHHHHHHHHhh
Q 037956 63 PDIRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLP-GRTDNEIKNHWHSRL 112 (245)
Q Consensus 63 p~i~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp-gRT~~~~Knrw~~~l 112 (245)
..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||++||..++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456788999999999999999999 89999999999 999999999998765
No 37
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.55 E-value=7.9e-15 Score=104.70 Aligned_cols=49 Identities=29% Similarity=0.531 Sum_probs=45.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CcHHHHhhhCC--CCCHHHHHHHHHHhhh
Q 037956 65 IRRGNFTQEEDETIIKLHEQLG-NRWSAIASRLP--GRTDNEIKNHWHSRLS 113 (245)
Q Consensus 65 i~k~~WT~EED~~Ll~lv~~~G-~kW~~IA~~lp--gRT~~~~Knrw~~~lk 113 (245)
.++++||+|||++|+++|.+|| ++|..||+.++ |||+.||++||+++++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999 58999999865 9999999999999886
No 38
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.51 E-value=3.3e-15 Score=109.40 Aligned_cols=61 Identities=20% Similarity=0.177 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCC
Q 037956 2 VKAGGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIR 66 (245)
Q Consensus 2 ~R~~~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~ 66 (245)
.|.-..++|++++|+||+|||++|+++|..||. +|..||+.| + |++.||+.||.. |....+
T Consensus 11 ~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l-g-Rt~~q~knRw~~-L~~~~~ 71 (73)
T 2llk_A 11 RENLYFQGDRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL-G-RSASSVKDRCRL-MKDTCN 71 (73)
T ss_dssp --------CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH-T-SCHHHHHHHHHH-CSCCCS
T ss_pred cceeeecCCCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh-C-CCHHHHHHHHHH-HHHHcc
Confidence 366678999999999999999999999999998 699999999 6 999999999984 544433
No 39
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.47 E-value=3e-15 Score=120.32 Aligned_cols=86 Identities=21% Similarity=0.367 Sum_probs=64.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHH
Q 037956 5 GGSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQ 84 (245)
Q Consensus 5 ~~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~ 84 (245)
...+.|++++|+||+|||++|+.+|..||. +|..||++|++ |++.||+.||.++|++.+..++|+.+- +.....
T Consensus 45 ~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~g-Rt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~ 118 (131)
T 3zqc_A 45 FNHLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIPG-RTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRS 118 (131)
T ss_dssp HHHTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTSTT-CCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC
T ss_pred hhccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHHHHhhcCCCcccc----cCchhh
Confidence 346789999999999999999999999997 99999999998 999999999999999999999887653 111122
Q ss_pred hCCcHHHHhhhC
Q 037956 85 LGNRWSAIASRL 96 (245)
Q Consensus 85 ~G~kW~~IA~~l 96 (245)
.+.+|..|++.|
T Consensus 119 kk~~~~~i~k~~ 130 (131)
T 3zqc_A 119 KKRKAADVPKKL 130 (131)
T ss_dssp ------------
T ss_pred hhhhhhhcchhc
Confidence 345677777665
No 40
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.46 E-value=7.1e-14 Score=102.31 Aligned_cols=51 Identities=16% Similarity=0.290 Sum_probs=47.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 63 PDIRRGNFTQEEDETIIKLHEQLG----NRWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 63 p~i~k~~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
+.+.+++||.+||.+|++++..|| ++|.+||++|||||.++|++||+.++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 456789999999999999999999 689999999999999999999998875
No 41
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.45 E-value=2.3e-14 Score=111.71 Aligned_cols=78 Identities=17% Similarity=0.308 Sum_probs=67.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccc----cCccccccccccccccc-----cCCCCCCCCCHHHHHH-
Q 037956 8 EKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYA----GLLRCGKSCRLRWMNYL-----RPDIRRGNFTQEEDET- 77 (245)
Q Consensus 8 ~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~----~~~Rt~kqCr~Rw~n~L-----~p~i~k~~WT~EED~~- 77 (245)
.++..++++||+|||+.|+.+|++||.++|..|++.+ ++ ||+.+|++||.+++ +|.++++.-+++|-..
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~-RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~r 85 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADH-RTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNR 85 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTC-CCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCC-CCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHH
Confidence 4567889999999999999999999999999999965 55 99999999999998 6999999888888765
Q ss_pred HHHHHHHhC
Q 037956 78 IIKLHEQLG 86 (245)
Q Consensus 78 Ll~lv~~~G 86 (245)
+++|+..+|
T Consensus 86 v~~~~~~~~ 94 (105)
T 2aje_A 86 VLNAHGYWT 94 (105)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777655
No 42
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.44 E-value=4.5e-14 Score=105.78 Aligned_cols=69 Identities=19% Similarity=0.363 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCccccccc----ccCccccccccccccccc-----cCCCCCC-CCCHHHHHHHHHHHHH
Q 037956 15 GSWTPEEDRKLIAYIRRYGIWNWSEMPKY----AGLLRCGKSCRLRWMNYL-----RPDIRRG-NFTQEEDETIIKLHEQ 84 (245)
Q Consensus 15 g~WT~EEDe~L~~~V~~~g~~nW~~Ia~~----~~~~Rt~kqCr~Rw~n~L-----~p~i~k~-~WT~EED~~Ll~lv~~ 84 (245)
++||+|||+.|+.+|++||.++|..|++. +++ ||+.||++||.|++ .|.++++ +...+....++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~-RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADH-RTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTT-SCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCC-CCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999999999995 777 99999999999988 6776665 6777777888888754
No 43
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.42 E-value=5.3e-14 Score=104.41 Aligned_cols=53 Identities=21% Similarity=0.437 Sum_probs=48.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccc
Q 037956 7 SEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYL 61 (245)
Q Consensus 7 ~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L 61 (245)
+.+....+++||+|||++|+++|..|| .+|..||++|++ |++.||+.||.++.
T Consensus 11 ~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~-RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 11 KSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGS-RTQDECILHFLRLP 63 (79)
T ss_dssp CCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSS-CCHHHHHHHHTTSC
T ss_pred CccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCC-CCHHHHHHHHHHhc
Confidence 455677789999999999999999999 699999999998 99999999999983
No 44
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.40 E-value=4e-13 Score=95.04 Aligned_cols=49 Identities=27% Similarity=0.499 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcHHHHh---hhCCCCCHHHHHHHHHHhhhh
Q 037956 66 RRGNFTQEEDETIIKLHEQLGNRWSAIA---SRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 66 ~k~~WT~EED~~Ll~lv~~~G~kW~~IA---~~lpgRT~~~~Knrw~~~lkk 114 (245)
++.+||+|||+.|+++|++||.+|..|+ .+|+|||+.+||+||++++++
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 6789999999999999999999999999 577999999999999998873
No 45
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.39 E-value=2.6e-13 Score=100.63 Aligned_cols=49 Identities=16% Similarity=0.301 Sum_probs=45.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHh
Q 037956 63 PDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSR 111 (245)
Q Consensus 63 p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~ 111 (245)
....+++||+|||++|+++|.+||++|..||++|+|||+.||++||..+
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 3456889999999999999999999999999999999999999999876
No 46
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.10 E-value=2.8e-14 Score=107.96 Aligned_cols=56 Identities=25% Similarity=0.431 Sum_probs=52.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccC
Q 037956 6 GSEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRP 63 (245)
Q Consensus 6 ~~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p 63 (245)
....|++.+|+||+|||++|+.+|..||. +|..||.+|++ |++.||+.||.++|..
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~g-Rt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGS-KTVSQCKNFYFNYKKR 63 (89)
Confidence 34678999999999999999999999998 89999999998 9999999999998873
No 47
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.37 E-value=8.2e-13 Score=98.91 Aligned_cols=50 Identities=26% Similarity=0.551 Sum_probs=45.8
Q ss_pred CCCCHHHHHHHHHHHHHhCC-cHHHHhhh----CCCCCHHHHHHHHHHhhhhhhh
Q 037956 68 GNFTQEEDETIIKLHEQLGN-RWSAIASR----LPGRTDNEIKNHWHSRLSKKRL 117 (245)
Q Consensus 68 ~~WT~EED~~Ll~lv~~~G~-kW~~IA~~----lpgRT~~~~Knrw~~~lkkk~~ 117 (245)
.+||.|||+.|+++|++||. +|+.|++. |+|||+++||+||++++++..+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~ 55 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI 55 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccC
Confidence 47999999999999999997 99999996 8999999999999999985544
No 48
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.37 E-value=7.5e-13 Score=102.09 Aligned_cols=50 Identities=40% Similarity=0.856 Sum_probs=47.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 64 DIRRGNFTQEEDETIIKLHEQLGN-RWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 64 ~i~k~~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
++++++||+|||++|+++|..||. +|..||..|||||+.||++||..+|.
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 51 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 51 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccC
Confidence 468999999999999999999996 79999999999999999999999886
No 49
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.36 E-value=1.1e-12 Score=104.79 Aligned_cols=52 Identities=29% Similarity=0.609 Sum_probs=48.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 62 RPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 62 ~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
.+..++++||+|||++|+++|..||.+|..||..|+||++.||+.||.++|.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLA 57 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcc
Confidence 4567899999999999999999999999999999999999999999999886
No 50
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.33 E-value=1.7e-13 Score=100.22 Aligned_cols=57 Identities=14% Similarity=0.323 Sum_probs=50.8
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhCC---CCcccccccccCcccccccccccccccc
Q 037956 5 GGSEKPSLRKGSWTPEEDRKLIAYIRRYGI---WNWSEMPKYAGLLRCGKSCRLRWMNYLR 62 (245)
Q Consensus 5 ~~~~kp~lkkg~WT~EEDe~L~~~V~~~g~---~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~ 62 (245)
+..+++...+++||++||++|..+|..||. .+|..||++||+ |+++||+.||.+++.
T Consensus 9 ~~~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpG-RT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 9 LRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPS-KSKEDCIARYKLLVS 68 (73)
T ss_dssp CCCCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSS-SCHHHHHHHHHHHHS
T ss_pred ccccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 345678889999999999999999999993 489999999998 999999999998764
No 51
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.32 E-value=1.8e-12 Score=103.37 Aligned_cols=57 Identities=26% Similarity=0.503 Sum_probs=51.2
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCC-cHHHHhhh----CCCCCHHHHHHHHHHhhhhhhh
Q 037956 61 LRPDIRRGNFTQEEDETIIKLHEQLGN-RWSAIASR----LPGRTDNEIKNHWHSRLSKKRL 117 (245)
Q Consensus 61 L~p~i~k~~WT~EED~~Ll~lv~~~G~-kW~~IA~~----lpgRT~~~~Knrw~~~lkkk~~ 117 (245)
+.+..++++||.|||+.|+++|.+||. +|+.|+.. |+|||+++||+||+++++...+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~ 72 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI 72 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHT
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhcc
Confidence 556788999999999999999999997 99999998 4999999999999999985433
No 52
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.32 E-value=2.5e-12 Score=100.24 Aligned_cols=55 Identities=24% Similarity=0.451 Sum_probs=48.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-cHHHHhhhC----CCCCHHHHHHHHHHhhhhhh
Q 037956 62 RPDIRRGNFTQEEDETIIKLHEQLGN-RWSAIASRL----PGRTDNEIKNHWHSRLSKKR 116 (245)
Q Consensus 62 ~p~i~k~~WT~EED~~Ll~lv~~~G~-kW~~IA~~l----pgRT~~~~Knrw~~~lkkk~ 116 (245)
.+..++++||.|||+.|+++|.+||. +|+.|+..+ +|||+.+||+||++++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~ 67 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK 67 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 34567899999999999999999996 999999965 89999999999999997543
No 53
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.31 E-value=1.4e-12 Score=114.34 Aligned_cols=52 Identities=33% Similarity=0.562 Sum_probs=46.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCc------HHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 63 PDIRRGNFTQEEDETIIKLHEQLGNR------WSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 63 p~i~k~~WT~EED~~Ll~lv~~~G~k------W~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
+.+++++||+|||++|+++|++||++ |..||++|||||+++||+||+.+|++
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 45788999999999999999999975 99999999999999999999999984
No 54
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.30 E-value=4.7e-12 Score=96.64 Aligned_cols=53 Identities=19% Similarity=0.433 Sum_probs=47.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CcHHHHhhhCCCCCHHHHHHHHHHhhhhhhhh
Q 037956 66 RRGNFTQEEDETIIKLHEQLG----NRWSAIASRLPGRTDNEIKNHWHSRLSKKRLT 118 (245)
Q Consensus 66 ~k~~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~~~Knrw~~~lkkk~~~ 118 (245)
.+++||.|||++|++++..|| ++|.+||++|||||+++|++||..++...+..
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~i 63 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYI 63 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 467999999999999999996 68999999999999999999999988754443
No 55
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.28 E-value=4.2e-12 Score=98.51 Aligned_cols=47 Identities=23% Similarity=0.514 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 67 RGNFTQEEDETIIKLHEQLGN-RWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 67 k~~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
+++||+|||++|+++|..||. +|..||..|||||+.||+.||.++|.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 48 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYIN 48 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHc
Confidence 578999999999999999996 89999999999999999999999886
No 56
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.24 E-value=1e-11 Score=99.14 Aligned_cols=55 Identities=27% Similarity=0.477 Sum_probs=48.7
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-cHHHHhhh----CCCCCHHHHHHHHHHhhhhhh
Q 037956 62 RPDIRRGNFTQEEDETIIKLHEQLGN-RWSAIASR----LPGRTDNEIKNHWHSRLSKKR 116 (245)
Q Consensus 62 ~p~i~k~~WT~EED~~Ll~lv~~~G~-kW~~IA~~----lpgRT~~~~Knrw~~~lkkk~ 116 (245)
....++++||.|||+.|+++|++||. +|+.|+.. |+|||+.+||+||+++++...
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~ 85 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS 85 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence 34457899999999999999999996 99999997 489999999999999997543
No 57
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.08 E-value=1.1e-10 Score=88.89 Aligned_cols=61 Identities=18% Similarity=0.324 Sum_probs=56.3
Q ss_pred cccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHhhhC-----CCCCHHHHHHHHHHhhhh
Q 037956 50 GKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRL-----PGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 50 ~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~l-----pgRT~~~~Knrw~~~lkk 114 (245)
+.-+.++|.++|.+ ++||.||+..|++|+++||.+|..|+..+ ++||..+||+||+.+.++
T Consensus 17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~ 82 (93)
T 3hm5_A 17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHH
Confidence 56688999999986 89999999999999999999999999999 589999999999998873
No 58
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=2.1e-10 Score=80.74 Aligned_cols=48 Identities=17% Similarity=0.054 Sum_probs=44.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 66 RRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 66 ~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
..++||+||++++++++..||++|..||..|||||..+|..+|+...+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999999999986544
No 59
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.00 E-value=4.2e-11 Score=91.39 Aligned_cols=48 Identities=10% Similarity=0.282 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCcccccccccCccccccccccccccc
Q 037956 13 RKGSWTPEEDRKLIAYIRRYG---IWNWSEMPKYAGLLRCGKSCRLRWMNYL 61 (245)
Q Consensus 13 kkg~WT~EEDe~L~~~V~~~g---~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L 61 (245)
.+++||+|||++|..++..|| ...|..||++||+ |+.+||+.||.+++
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpG-RT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEG-RTPEEVKKHYEILV 57 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTT-CCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 367899999999999999997 3479999999998 99999999998764
No 60
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.90 E-value=2e-09 Score=78.32 Aligned_cols=49 Identities=18% Similarity=0.333 Sum_probs=44.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 64 DIRRGNFTQEEDETIIKLHEQLG----NRWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 64 ~i~k~~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
....+.||.||+++|.+++.+|+ ++|.+||.+| |||..+|++||..++.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 34578999999999999999997 6899999998 9999999999998765
No 61
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.86 E-value=3.6e-09 Score=92.13 Aligned_cols=51 Identities=16% Similarity=0.251 Sum_probs=46.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhhhh
Q 037956 66 RRGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSKKR 116 (245)
Q Consensus 66 ~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkkk~ 116 (245)
..++||.||+.++++++.+||++|..||+.+++||..|||++|+...++..
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHhh
Confidence 457999999999999999999999999999999999999999998877543
No 62
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=1.8e-09 Score=75.91 Aligned_cols=52 Identities=15% Similarity=0.167 Sum_probs=45.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccccccccc
Q 037956 7 SEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY 60 (245)
Q Consensus 7 ~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~ 60 (245)
+++.....++||+||++++.+++..||. +|..||.+|++ |+..||+.+|...
T Consensus 5 ~~~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~~-rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 5 SSGDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLER-KSVPDCVLYYYLT 56 (61)
T ss_dssp CCCCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCTT-SCHHHHHHHHHHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCC-CCHHHHHHHHHHh
Confidence 3455556789999999999999999996 99999999998 9999999998654
No 63
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.79 E-value=1.1e-09 Score=77.37 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccc---ccccCcccccccccccccccc
Q 037956 13 RKGSWTPEEDRKLIAYIRRYGIWNWSEMP---KYAGLLRCGKSCRLRWMNYLR 62 (245)
Q Consensus 13 kkg~WT~EEDe~L~~~V~~~g~~nW~~Ia---~~~~~~Rt~kqCr~Rw~n~L~ 62 (245)
.+++||+|||+.|++.|++||. +|..|+ .++.+ |+.-.+++||.+...
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~-RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKG-RRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTT-CCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccC-cccchHHHHHHHHHh
Confidence 6789999999999999999998 999999 57666 999999999998665
No 64
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.68 E-value=2.7e-08 Score=72.55 Aligned_cols=48 Identities=15% Similarity=0.267 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHhC----CcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 67 RGNFTQEEDETIIKLHEQLG----NRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 67 k~~WT~EED~~Ll~lv~~~G----~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
...||.+|+.+|.+++..|+ .+|..||..+||||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 46899999999999999998 4799999999999999999999988764
No 65
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.62 E-value=3.1e-08 Score=94.82 Aligned_cols=47 Identities=17% Similarity=0.306 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 68 GNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 68 ~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
..||.+|-.++++++.+||.+|..||..+++||..|||++|+.+-++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999865554
No 66
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.56 E-value=7.9e-09 Score=75.17 Aligned_cols=50 Identities=16% Similarity=0.234 Sum_probs=43.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC---CCcccccccccCcccccccccccccccc
Q 037956 11 SLRKGSWTPEEDRKLIAYIRRYGI---WNWSEMPKYAGLLRCGKSCRLRWMNYLR 62 (245)
Q Consensus 11 ~lkkg~WT~EEDe~L~~~V~~~g~---~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~ 62 (245)
+..++.||.|||++|.+++..|+. ..|..||.++| |+..+|+.||..+..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~lg--Rt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHhC--CCHHHHHHHHHHHHH
Confidence 456789999999999999999983 46999999984 999999999987654
No 67
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.54 E-value=1e-07 Score=66.64 Aligned_cols=47 Identities=26% Similarity=0.473 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCc-HHHHhh-hCCCCCHHHHHHHHHHhhh
Q 037956 67 RGNFTQEEDETIIKLHEQL--------GNR-WSAIAS-RLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 67 k~~WT~EED~~Ll~lv~~~--------G~k-W~~IA~-~lpgRT~~~~Knrw~~~lk 113 (245)
+.+||.|||..|++.|.+| |++ |..||. .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 543 999999 8999999999999998775
No 68
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.52 E-value=1.4e-08 Score=71.04 Aligned_cols=48 Identities=23% Similarity=0.402 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCcccccc-cccCcccccccccccccccc
Q 037956 14 KGSWTPEEDRKLIAYIRRY--------GIWNWSEMPK-YAGLLRCGKSCRLRWMNYLR 62 (245)
Q Consensus 14 kg~WT~EEDe~L~~~V~~~--------g~~nW~~Ia~-~~~~~Rt~kqCr~Rw~n~L~ 62 (245)
|.+||+|||++|+++|..| |..-|..+++ .++. ++-.+||+||.++|.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~-HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQ-HSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSS-CCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCC-CCHHHHHHHHHHHcc
Confidence 6789999999999999999 5556999999 7887 999999999998875
No 69
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.35 E-value=1.2e-07 Score=82.47 Aligned_cols=49 Identities=24% Similarity=0.445 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccccccccccc
Q 037956 12 LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLR 62 (245)
Q Consensus 12 lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~ 62 (245)
...++||+||++++++++.+||. +|..||+.+++ |+..||+.+|.++.+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~VgT-KT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 45679999999999999999997 99999999999 999999999988775
No 70
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.32 E-value=1.6e-07 Score=68.42 Aligned_cols=48 Identities=25% Similarity=0.425 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCcccccccccCcccccccccccccccc
Q 037956 14 KGSWTPEEDRKLIAYIRRYGI---WNWSEMPKYAGLLRCGKSCRLRWMNYLR 62 (245)
Q Consensus 14 kg~WT~EEDe~L~~~V~~~g~---~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~ 62 (245)
...||.+|+++|..++..|+. ++|..||..+|+ |+..+|+.||...+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~g-KT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGS-RSPEECQRKYMENPR 58 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTT-SCHHHHHHHHHHSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCC-CCHHHHHHHHHHHHh
Confidence 457999999999999999975 579999999999 999999999997754
No 71
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.29 E-value=9.2e-07 Score=66.68 Aligned_cols=45 Identities=22% Similarity=0.454 Sum_probs=42.9
Q ss_pred CCCHHHHHHHHHHHHHhCC---cHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 69 NFTQEEDETIIKLHEQLGN---RWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~---kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
-||.|||..|+..+++-|. .|..||+.|.+|+.++|++||+.+++
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 5999999999999999996 79999999999999999999999886
No 72
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=3.2e-06 Score=59.59 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=45.3
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHhh-hCCCCCHHHHHHHHHHh
Q 037956 62 RPDIRRGNFTQEEDETIIKLHEQLGNRWSAIAS-RLPGRTDNEIKNHWHSR 111 (245)
Q Consensus 62 ~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA~-~lpgRT~~~~Knrw~~~ 111 (245)
.|.+....||+||-.+..+++.+||..|..|++ .|++||..+|...|+..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence 367788899999999999999999999999999 58999999999988743
No 73
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.42 E-value=3e-07 Score=65.77 Aligned_cols=44 Identities=16% Similarity=0.413 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHhCC---cHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 69 NFTQEEDETIIKLHEQLGN---RWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~---kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
-||.|||..|+..+++-|. .|..||+.| +|+++||++||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 5999999999999999997 799999999 9999999999998875
No 74
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.05 E-value=5.6e-07 Score=65.43 Aligned_cols=43 Identities=23% Similarity=0.401 Sum_probs=38.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----cHHHHhhhCCCCCHHHHHHHHH
Q 037956 67 RGNFTQEEDETIIKLHEQLGN----RWSAIASRLPGRTDNEIKNHWH 109 (245)
Q Consensus 67 k~~WT~EED~~Ll~lv~~~G~----kW~~IA~~lpgRT~~~~Knrw~ 109 (245)
...||.+|+++|..++..|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999984 7999999999999999999884
No 75
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.04 E-value=9.6e-06 Score=61.52 Aligned_cols=55 Identities=20% Similarity=0.399 Sum_probs=47.4
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHHHHhCCcHHHHhhhCC-----CCCHHHHHHHHHHhhhh
Q 037956 56 RWMNYLRPDIRRGNFTQEEDETIIKLHEQLGNRWSAIASRLP-----GRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 56 Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lp-----gRT~~~~Knrw~~~lkk 114 (245)
.|..+|. ...||.||...|++|+++|+-+|..|+..+. +||-.++|.||+.+.++
T Consensus 23 EY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~ 82 (93)
T 4iej_A 23 EYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp HHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHH
Confidence 3444554 3689999999999999999999999999874 79999999999998863
No 76
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.03 E-value=5.9e-06 Score=75.01 Aligned_cols=98 Identities=17% Similarity=0.274 Sum_probs=78.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccc-------cccccc---------------------------
Q 037956 15 GSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCR-------LRWMNY--------------------------- 60 (245)
Q Consensus 15 g~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr-------~Rw~n~--------------------------- 60 (245)
+.||..|...++.++.+||..+|..||..|++ ++...++ .||...
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~-Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEG-KTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTT-CCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999987 7776654 122100
Q ss_pred -------------c---cCCCCCCCCCHHHHHHHHHHHHHhCC----cHHHHhh------------hCCCCCHHHHHHHH
Q 037956 61 -------------L---RPDIRRGNFTQEEDETIIKLHEQLGN----RWSAIAS------------RLPGRTDNEIKNHW 108 (245)
Q Consensus 61 -------------L---~p~i~k~~WT~EED~~Ll~lv~~~G~----kW~~IA~------------~lpgRT~~~~Knrw 108 (245)
| .+.-+...||.+||..|+-++.+||- .|..|.. ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 01224468999999999999999994 6999963 34679999999999
Q ss_pred HHhhh
Q 037956 109 HSRLS 113 (245)
Q Consensus 109 ~~~lk 113 (245)
..+++
T Consensus 270 ~tLi~ 274 (304)
T 1ofc_X 270 NTLIT 274 (304)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99886
No 77
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.86 E-value=2.5e-05 Score=59.28 Aligned_cols=46 Identities=22% Similarity=0.125 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhh
Q 037956 67 RGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRL 112 (245)
Q Consensus 67 k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~l 112 (245)
...||+||.++..+++..||++|..||..||+||..+|-..|+..-
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~K 88 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK 88 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhccc
Confidence 3689999999999999999999999999999999999999887543
No 78
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=6.4e-06 Score=58.02 Aligned_cols=50 Identities=20% Similarity=0.278 Sum_probs=45.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCcccccc-cccCcccccccccccc
Q 037956 7 SEKPSLRKGSWTPEEDRKLIAYIRRYGIWNWSEMPK-YAGLLRCGKSCRLRWM 58 (245)
Q Consensus 7 ~~kp~lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~-~~~~~Rt~kqCr~Rw~ 58 (245)
+-.|.+....||+||-++..+++..||. +|..|++ .+++ |+..||..-|.
T Consensus 2 ~~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY 52 (63)
T 2yqk_A 2 SSGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLPN-KETGELITFYY 52 (63)
T ss_dssp CCCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCTT-SCHHHHHHHHH
T ss_pred CCCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CcHHHHHHHHh
Confidence 4578888999999999999999999998 9999999 5898 99999987664
No 79
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.85 E-value=2.8e-06 Score=61.75 Aligned_cols=44 Identities=11% Similarity=0.213 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---CcccccccccCcccccccccccc
Q 037956 14 KGSWTPEEDRKLIAYIRRYGIW---NWSEMPKYAGLLRCGKSCRLRWM 58 (245)
Q Consensus 14 kg~WT~EEDe~L~~~V~~~g~~---nW~~Ia~~~~~~Rt~kqCr~Rw~ 58 (245)
.+.||.+|+++|..++..|+.+ .|..||..||+ |+..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpG-KT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKG-RTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCS-SCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCC-CCHHHHHHHHH
Confidence 3579999999999999999753 79999999998 99999999986
No 80
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.76 E-value=6.2e-05 Score=54.05 Aligned_cols=44 Identities=16% Similarity=0.194 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHhh-hCCCCCHHHHHHHHHH
Q 037956 67 RGNFTQEEDETIIKLHEQLGNRWSAIAS-RLPGRTDNEIKNHWHS 110 (245)
Q Consensus 67 k~~WT~EED~~Ll~lv~~~G~kW~~IA~-~lpgRT~~~~Knrw~~ 110 (245)
...||+||-.+..+++..||..|..|++ .|++||..+|...|+.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4579999999999999999999999999 5999999999998884
No 81
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.52 E-value=2.8e-05 Score=74.46 Aligned_cols=49 Identities=24% Similarity=0.445 Sum_probs=43.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccccccccccc
Q 037956 12 LRKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLR 62 (245)
Q Consensus 12 lkkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~ 62 (245)
....+||.+|-++++.++.+||. +|..||.++++ |+..||+..|.++-.
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~VgT-KT~~Qvk~fy~~~kk 426 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGN-KSVVQVKNFFVNYRR 426 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHSS-CCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 34679999999999999999997 99999999999 999999998875443
No 82
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.16 E-value=0.00044 Score=50.98 Aligned_cols=48 Identities=19% Similarity=0.524 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHhC----------CcHHHHhhhCC----CCCHHHHHHHHHHhhhh
Q 037956 67 RGNFTQEEDETIIKLHEQLG----------NRWSAIASRLP----GRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 67 k~~WT~EED~~Ll~lv~~~G----------~kW~~IA~~lp----gRT~~~~Knrw~~~lkk 114 (245)
...||.+|-.+||+++..+. ..|..||..|. .||+.||+++|.++.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 46799999999999997633 14999999873 69999999999998874
No 83
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.16 E-value=0.00011 Score=55.86 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCccccccccc----Ccccccccccccccccc
Q 037956 14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAG----LLRCGKSCRLRWMNYLR 62 (245)
Q Consensus 14 kg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~----~~Rt~kqCr~Rw~n~L~ 62 (245)
-++||.||+..|++++++|+. .|..|+..+. ..|+.-+.+.||....+
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999997 9999999883 23999999999986543
No 84
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.99 E-value=0.00018 Score=54.52 Aligned_cols=43 Identities=12% Similarity=0.270 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccccccc
Q 037956 14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWM 58 (245)
Q Consensus 14 kg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~ 58 (245)
...||+||.+++.+++..||. +|..||..+++ |+..+|..-|.
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~~-Kt~~~cV~~YY 85 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLER-KTVAECVLYYY 85 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCTT-CCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcCC-CCHHHHHHHHh
Confidence 357999999999999999997 99999999998 99999987664
No 85
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.95 E-value=0.00022 Score=51.13 Aligned_cols=43 Identities=12% Similarity=0.305 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCcccccc-cccCcccccccccccc
Q 037956 14 KGSWTPEEDRKLIAYIRRYGIWNWSEMPK-YAGLLRCGKSCRLRWM 58 (245)
Q Consensus 14 kg~WT~EEDe~L~~~V~~~g~~nW~~Ia~-~~~~~Rt~kqCr~Rw~ 58 (245)
...||+||-++...++..||. +|..|++ ++++ |+..+|..-|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~~-Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGK-DFNDIRQDFLPW-KSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCSS-SCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcCC-CCHHHHHHHHH
Confidence 457999999999999999998 9999999 5998 99999987665
No 86
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.90 E-value=6.4e-05 Score=55.55 Aligned_cols=49 Identities=29% Similarity=0.605 Sum_probs=39.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---------CCcccccccc---cCccccccccccccccc
Q 037956 13 RKGSWTPEEDRKLIAYIRRYGI---------WNWSEMPKYA---GLLRCGKSCRLRWMNYL 61 (245)
Q Consensus 13 kkg~WT~EEDe~L~~~V~~~g~---------~nW~~Ia~~~---~~~Rt~kqCr~Rw~n~L 61 (245)
+...||.+|-..|+.+...... .-|..||..| |..|++.||+.+|.+..
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4578999999999999865311 1599999975 45699999999998754
No 87
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.90 E-value=0.0021 Score=54.30 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHHhC-CcHHHHhh--hC------------CCCCHHHHHHHHHHhhh
Q 037956 68 GNFTQEEDETIIKLHEQLG-NRWSAIAS--RL------------PGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 68 ~~WT~EED~~Ll~lv~~~G-~kW~~IA~--~l------------pgRT~~~~Knrw~~~lk 113 (245)
..||.+||..|+..+.+|| ++|..|-. .| ..+++..|..|...+|+
T Consensus 135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 3699999999999999999 89999965 22 12467789999888776
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=96.82 E-value=0.0015 Score=60.68 Aligned_cols=99 Identities=19% Similarity=0.283 Sum_probs=75.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccc-------cccccc---------------------------
Q 037956 15 GSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCR-------LRWMNY--------------------------- 60 (245)
Q Consensus 15 g~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr-------~Rw~n~--------------------------- 60 (245)
+.||.-|=..++.++.+||..+-..||..|+++++...++ .||...
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L 203 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL 203 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5699999999999999999988999999997226665554 111110
Q ss_pred -------------c----cCC-CCCCCCCHHHHHHHHHHHHHhC----CcHHHHhhh------------CCCCCHHHHHH
Q 037956 61 -------------L----RPD-IRRGNFTQEEDETIIKLHEQLG----NRWSAIASR------------LPGRTDNEIKN 106 (245)
Q Consensus 61 -------------L----~p~-i~k~~WT~EED~~Ll~lv~~~G----~kW~~IA~~------------lpgRT~~~~Kn 106 (245)
| .+. -+...||.+||..||-++.+|| +.|..|-.. |..||+..|..
T Consensus 204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r 283 (374)
T 2y9y_A 204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR 283 (374)
T ss_dssp HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence 0 011 1345799999999999999999 569999443 35799999999
Q ss_pred HHHHhhh
Q 037956 107 HWHSRLS 113 (245)
Q Consensus 107 rw~~~lk 113 (245)
|...+|+
T Consensus 284 Rc~tLi~ 290 (374)
T 2y9y_A 284 RGNTLLQ 290 (374)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999996
No 89
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.39 E-value=0.00055 Score=48.94 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC--CCcccccccccCcccccccccccccccc
Q 037956 14 KGSWTPEEDRKLIAYIRRYGI--WNWSEMPKYAGLLRCGKSCRLRWMNYLR 62 (245)
Q Consensus 14 kg~WT~EEDe~L~~~V~~~g~--~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~ 62 (245)
--.||.|||..++..+++-|. ..|..||..+ + |++.|+..||+..+.
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-n-ks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-D-KNPNQVSERFQQLMK 62 (70)
Confidence 346999999999999998885 3799999999 4 999999999987654
No 90
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.32 E-value=0.0012 Score=49.78 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=42.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCC--CCcccccccccCccccccccccccc
Q 037956 10 PSLRKGSWTPEEDRKLIAYIRRYGI--WNWSEMPKYAGLLRCGKSCRLRWMN 59 (245)
Q Consensus 10 p~lkkg~WT~EEDe~L~~~V~~~g~--~nW~~Ia~~~~~~Rt~kqCr~Rw~n 59 (245)
.|-+-.-||.|||..++..+++-|. ..|..||+.+++ |++.|+.+||+.
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~N-ks~nqV~~RFq~ 79 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGN-KTPVEVSHRFRE 79 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSS-CCHHHHHHHHHH
T ss_pred CCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHcc-CCHHHHHHHHHH
Confidence 3444557999999999999999875 479999999998 999999999985
No 91
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.11 E-value=0.15 Score=35.89 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=39.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCc---HHHHhhhC--CCCCHHHHHHHHHHh
Q 037956 66 RRGNFTQEEDETIIKLHEQLGNR---WSAIASRL--PGRTDNEIKNHWHSR 111 (245)
Q Consensus 66 ~k~~WT~EED~~Ll~lv~~~G~k---W~~IA~~l--pgRT~~~~Knrw~~~ 111 (245)
.+-.||+|..+..++++..+|.. +..|.+.| +|.|..+|+.|.+.+
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45679999999999999999954 89998875 789999999987653
No 92
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=93.95 E-value=0.093 Score=47.46 Aligned_cols=46 Identities=22% Similarity=0.275 Sum_probs=41.9
Q ss_pred CCCCHHHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 68 GNFTQEEDETIIKLHEQLGN-RWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 68 ~~WT~EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
+.||..+...++.++.+||. .|..||..++|+|..+|+.++..+..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 57999999999999999994 89999999999999999887776665
No 93
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=93.01 E-value=0.03 Score=42.23 Aligned_cols=49 Identities=16% Similarity=0.314 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCccccccccc----Ccccccccccccccccc
Q 037956 13 RKGSWTPEEDRKLIAYIRRYGIWNWSEMPKYAG----LLRCGKSCRLRWMNYLR 62 (245)
Q Consensus 13 kkg~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~----~~Rt~kqCr~Rw~n~L~ 62 (245)
+-..||.||...|++++++|.- .|..|+.... ..|+..+.++||.....
T Consensus 29 ~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 29 HDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp CBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 3467999999999999999997 9999988654 13888888888876443
No 94
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.84 E-value=0.14 Score=42.86 Aligned_cols=48 Identities=21% Similarity=0.301 Sum_probs=40.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CcHHHHhhh--CCCCCHHHHHHHHHHhhh
Q 037956 66 RRGNFTQEEDETIIKLHEQLG---NRWSAIASR--LPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 66 ~k~~WT~EED~~Ll~lv~~~G---~kW~~IA~~--lpgRT~~~~Knrw~~~lk 113 (245)
....||+.|-..|+.++.+|| .+|..|+.. |.+++...|+..+..++.
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~ 58 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHN 58 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999 589999864 889999999987776665
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.30 E-value=0.32 Score=43.16 Aligned_cols=28 Identities=36% Similarity=0.805 Sum_probs=25.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 037956 15 GSWTPEEDRKLIAYIRRYGIWNWSEMPK 42 (245)
Q Consensus 15 g~WT~EEDe~L~~~V~~~g~~nW~~Ia~ 42 (245)
..|+.+||..|+..|.+||.|+|..|-.
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4599999999999999999999999965
No 96
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=89.23 E-value=0.14 Score=35.96 Aligned_cols=48 Identities=13% Similarity=0.179 Sum_probs=34.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCC---cccccccccC-ccccccccccccc
Q 037956 11 SLRKGSWTPEEDRKLIAYIRRYGIWN---WSEMPKYAGL-LRCGKSCRLRWMN 59 (245)
Q Consensus 11 ~lkkg~WT~EEDe~L~~~V~~~g~~n---W~~Ia~~~~~-~Rt~kqCr~Rw~n 59 (245)
...+..||+|..+....+|..+|. . +..|.+.|+. +.+..+++-+.+.
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQK 55 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQK 55 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence 345678999999999999999994 4 5677776652 1456666555443
No 97
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=80.97 E-value=3.4 Score=36.50 Aligned_cols=47 Identities=13% Similarity=0.244 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CcHHHHhh--hCCCCCHHHHHHHHHHhhh
Q 037956 67 RGNFTQEEDETIIKLHEQLG---NRWSAIAS--RLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 67 k~~WT~EED~~Ll~lv~~~G---~kW~~IA~--~lpgRT~~~~Knrw~~~lk 113 (245)
+++||.-|-..|+..+.+|| .+|..|+. .|+.++...++.-+..++.
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHH
Confidence 57899999999999999999 58999976 4889999999998887664
No 98
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=73.67 E-value=5.3 Score=26.37 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 73 EEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 73 EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
+.+..++.++-..|-.+.+||..| |-+...|+.+.+..++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~ 57 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARD 57 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 455566667667889999999999 9999999998887665
No 99
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=71.10 E-value=3.2 Score=31.78 Aligned_cols=37 Identities=22% Similarity=0.412 Sum_probs=29.4
Q ss_pred HHHHHHHHhC--------CcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 77 TIIKLHEQLG--------NRWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 77 ~Ll~lv~~~G--------~kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
.|..+|..+| +.|..||..|.--.+..+|..|..+|-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~ 97 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILL 97 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHS
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 4888888888 369999999844447899999988774
No 100
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=70.25 E-value=6.8 Score=29.97 Aligned_cols=37 Identities=22% Similarity=0.460 Sum_probs=28.2
Q ss_pred HHHHHHHHhC--------CcHHHHhhhCCCCC----HHHHHHHHHHhhh
Q 037956 77 TIIKLHEQLG--------NRWSAIASRLPGRT----DNEIKNHWHSRLS 113 (245)
Q Consensus 77 ~Ll~lv~~~G--------~kW~~IA~~lpgRT----~~~~Knrw~~~lk 113 (245)
.|..+|..+| ++|..||..|.--. ...+|..|..+|-
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~ 92 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVY 92 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 5788888888 46999999983222 5688999988774
No 101
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=69.75 E-value=7.4 Score=29.01 Aligned_cols=37 Identities=22% Similarity=0.533 Sum_probs=27.6
Q ss_pred HHHHHHHHhC--------CcHHHHhhhCCCCC----HHHHHHHHHHhhh
Q 037956 77 TIIKLHEQLG--------NRWSAIASRLPGRT----DNEIKNHWHSRLS 113 (245)
Q Consensus 77 ~Ll~lv~~~G--------~kW~~IA~~lpgRT----~~~~Knrw~~~lk 113 (245)
.|..+|..+| +.|..||..|.--. ...+|..|..+|-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~ 96 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILH 96 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 4777788888 46999999983322 4688888887764
No 102
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=69.42 E-value=7.4 Score=26.38 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHH----hCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 73 EEDETIIKLHEQ----LGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 73 EED~~Ll~lv~~----~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
+.+..++.++-- .|-.+.+||..| |-+...|+.+.+..+++
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 344455555554 578899999999 99999999988877753
No 103
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=68.91 E-value=35 Score=26.26 Aligned_cols=76 Identities=20% Similarity=0.348 Sum_probs=50.0
Q ss_pred CCCCCCCHHHH--HHHHHHHHHhCCCCcccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhC---
Q 037956 12 LRKGSWTPEED--RKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHEQLG--- 86 (245)
Q Consensus 12 lkkg~WT~EED--e~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~~~G--- 86 (245)
.=+.+|.+.+. +.|..+....|. ....++. +++ |.- + =-.|..+|.++|
T Consensus 5 ~~~~r~~~~~~Fl~~L~~F~~~rGt-pl~~~P~-i~g-k~l-----------D------------L~~Ly~~V~~~GG~~ 58 (121)
T 2rq5_A 5 SLGRRWGPNVQRLACIKKHLRSQGI-TMDELPL-IGG-CEL-----------D------------LACFFRLINEMGGMQ 58 (121)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHTTC-CCSSCCE-ETT-EEC-----------C------------HHHHHHHHHHTTSHH
T ss_pred HhhHhcCCcHHHHHHHHHHHHHcCC-CCCCCCc-CCC-Eec-----------c------------HHHHHHHHHHcCcHH
Confidence 33457988774 457777777786 5555553 332 222 1 124788888888
Q ss_pred -----CcHHHHhhhC--CCC---CHHHHHHHHHHhhh
Q 037956 87 -----NRWSAIASRL--PGR---TDNEIKNHWHSRLS 113 (245)
Q Consensus 87 -----~kW~~IA~~l--pgR---T~~~~Knrw~~~lk 113 (245)
+.|..||..| |.- ....+|.+|..+|-
T Consensus 59 ~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~ 95 (121)
T 2rq5_A 59 QVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLL 95 (121)
T ss_dssp HHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHH
T ss_pred HhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhH
Confidence 4699999998 321 25688999988774
No 104
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=66.50 E-value=8.8 Score=29.57 Aligned_cols=37 Identities=24% Similarity=0.509 Sum_probs=27.3
Q ss_pred HHHHHHHHhC--------CcHHHHhhhCCCC--C--HHHHHHHHHHhhh
Q 037956 77 TIIKLHEQLG--------NRWSAIASRLPGR--T--DNEIKNHWHSRLS 113 (245)
Q Consensus 77 ~Ll~lv~~~G--------~kW~~IA~~lpgR--T--~~~~Knrw~~~lk 113 (245)
.|..+|..+| ++|..||..|.-- + ...+|..|..+|-
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~ 94 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILN 94 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhH
Confidence 4778888888 3699999998322 1 4678888887774
No 105
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=66.31 E-value=7.5 Score=25.95 Aligned_cols=40 Identities=10% Similarity=0.203 Sum_probs=30.6
Q ss_pred HHHHHHHHHH----HhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 74 EDETIIKLHE----QLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 74 ED~~Ll~lv~----~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
.+..++.++- ..|-.+.+||..| |-+...|+.+.+..+++
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3444555544 3478899999999 99999999998887763
No 106
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=65.75 E-value=9.1 Score=29.52 Aligned_cols=37 Identities=19% Similarity=0.407 Sum_probs=27.5
Q ss_pred HHHHHHHHhC--------CcHHHHhhhCCCCC----HHHHHHHHHHhhh
Q 037956 77 TIIKLHEQLG--------NRWSAIASRLPGRT----DNEIKNHWHSRLS 113 (245)
Q Consensus 77 ~Ll~lv~~~G--------~kW~~IA~~lpgRT----~~~~Knrw~~~lk 113 (245)
.|..+|..+| +.|.+||..|.--+ ...+|..|..+|-
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~ 103 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLF 103 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 4778888888 46999999983222 4678888887774
No 107
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=62.80 E-value=11 Score=26.75 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 73 EEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 73 EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
+.+..++.++...|-.-.+||..| |-+...|+.+.+..+++
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRA 80 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 344556667667788899999999 99999999998877654
No 108
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=62.09 E-value=4.8 Score=31.30 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=29.0
Q ss_pred HHHHHHHHhCC--------cHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 77 TIIKLHEQLGN--------RWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 77 ~Ll~lv~~~G~--------kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
.|..+|...|+ .|..||..|.--.+..+|..|..+|-
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~ 96 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILL 96 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 47777777773 59999998744448999999988775
No 109
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=59.45 E-value=17 Score=33.55 Aligned_cols=46 Identities=26% Similarity=0.312 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHhCC-cHHHHhhhCC-CCCHHHHHHHHHHhhh
Q 037956 68 GNFTQEEDETIIKLHEQLGN-RWSAIASRLP-GRTDNEIKNHWHSRLS 113 (245)
Q Consensus 68 ~~WT~EED~~Ll~lv~~~G~-kW~~IA~~lp-gRT~~~~Knrw~~~lk 113 (245)
+.||.-+=..++.+..+||. .-..||..|. |+|..+|+........
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~ 171 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWS 171 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 57999999999999999994 6999999997 9999999955444443
No 110
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=58.84 E-value=6.3 Score=28.82 Aligned_cols=37 Identities=30% Similarity=0.499 Sum_probs=26.7
Q ss_pred HHHHHHHHhC--------CcHHHHhhhCCC----CCHHHHHHHHHHhhh
Q 037956 77 TIIKLHEQLG--------NRWSAIASRLPG----RTDNEIKNHWHSRLS 113 (245)
Q Consensus 77 ~Ll~lv~~~G--------~kW~~IA~~lpg----RT~~~~Knrw~~~lk 113 (245)
.|..+|...| +.|.+||..|.- -....+|..|..+|-
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~ 88 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILY 88 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHH
Confidence 4777788777 469999998722 125688888877663
No 111
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=56.67 E-value=16 Score=28.98 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=28.3
Q ss_pred HHHHHHHHhC--------CcHHHHhhhCC--CC---CHHHHHHHHHHhhh
Q 037956 77 TIIKLHEQLG--------NRWSAIASRLP--GR---TDNEIKNHWHSRLS 113 (245)
Q Consensus 77 ~Ll~lv~~~G--------~kW~~IA~~lp--gR---T~~~~Knrw~~~lk 113 (245)
.|..+|..+| +.|.+||..|. .. ....+|..|..+|-
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~ 117 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLY 117 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHH
Confidence 4778888888 46999999982 22 25789999988775
No 112
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=55.74 E-value=18 Score=27.90 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=28.6
Q ss_pred HHHHHHHHhC--------CcHHHHhhhCC--CC---CHHHHHHHHHHhhh
Q 037956 77 TIIKLHEQLG--------NRWSAIASRLP--GR---TDNEIKNHWHSRLS 113 (245)
Q Consensus 77 ~Ll~lv~~~G--------~kW~~IA~~lp--gR---T~~~~Knrw~~~lk 113 (245)
.|..+|..+| +.|..||..|. .. ....+|..|..+|-
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~ 105 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLY 105 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH
Confidence 5778888888 46999999982 22 25789999988775
No 113
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=52.85 E-value=9.2 Score=28.57 Aligned_cols=37 Identities=22% Similarity=0.490 Sum_probs=27.2
Q ss_pred HHHHHHHHhC--------CcHHHHhhhCCC--C---CHHHHHHHHHHhhh
Q 037956 77 TIIKLHEQLG--------NRWSAIASRLPG--R---TDNEIKNHWHSRLS 113 (245)
Q Consensus 77 ~Ll~lv~~~G--------~kW~~IA~~lpg--R---T~~~~Knrw~~~lk 113 (245)
.|..+|..+| +.|.+||..|.- . ....+|..|..+|-
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~ 86 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLIL 86 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHH
Confidence 4777888888 469999998731 1 24678888887774
No 114
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=52.26 E-value=31 Score=23.09 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 70 FTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 70 WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
+|+.|- .++.++ ..|-.-.+||..| |-+...|+.+.+..+++
T Consensus 17 L~~~e~-~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERER-QVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHH-HHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 444444 444555 6788899999999 99999999988877753
No 115
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=51.71 E-value=24 Score=27.49 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=25.3
Q ss_pred HhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 84 QLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 84 ~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
..|-...+||..| |-+...|+++.+..+++
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467899999999 99999999998877653
No 116
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=50.96 E-value=25 Score=26.23 Aligned_cols=35 Identities=23% Similarity=0.471 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHH
Q 037956 71 TQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKN 106 (245)
Q Consensus 71 T~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Kn 106 (245)
+..-+..|..+....|..|..+|.+| |=+..+|..
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 56667788888899999999999999 888876654
No 117
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=50.89 E-value=4.2 Score=31.64 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=42.5
Q ss_pred HHHHHHHHHhCC-------CCcccccccccCcccc----ccccccccccccCCCCCCCCCHHHHHHHHHHHH
Q 037956 23 RKLIAYIRRYGI-------WNWSEMPKYAGLLRCG----KSCRLRWMNYLRPDIRRGNFTQEEDETIIKLHE 83 (245)
Q Consensus 23 e~L~~~V~~~g~-------~nW~~Ia~~~~~~Rt~----kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~lv~ 83 (245)
-+|..+|.+.|- ..|..||..|+...+. ...+..|..+|.|-- .++++|-..|.+-+.
T Consensus 45 ~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE---~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 45 ACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYD---SLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHH---HCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHH---CcCHHHHhhHHHHHH
Confidence 467888888873 4799999999864332 345788888887632 378888888877664
No 118
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=50.59 E-value=22 Score=24.97 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=30.6
Q ss_pred HHHHHHHHHHH----hCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 74 EDETIIKLHEQ----LGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 74 ED~~Ll~lv~~----~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
.+..++.+.-- .|-.+..||..| |-+...|+.+.+..+++
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34455555544 567899999999 99999999988877753
No 119
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=46.46 E-value=3.4 Score=31.59 Aligned_cols=39 Identities=15% Similarity=0.283 Sum_probs=29.6
Q ss_pred HHHHHHHHhCC-------CCcccccccccCccccccccccccccccC
Q 037956 24 KLIAYIRRYGI-------WNWSEMPKYAGLLRCGKSCRLRWMNYLRP 63 (245)
Q Consensus 24 ~L~~~V~~~g~-------~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p 63 (245)
.|..+|...|- ..|..||..++. -.+..++..|.++|.|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~-~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQI-SDYQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTS-CCTTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCC-ChHHHHHHHHHHHHHH
Confidence 57777777763 479999999987 4477778888877764
No 120
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=46.00 E-value=24 Score=26.81 Aligned_cols=31 Identities=26% Similarity=0.575 Sum_probs=25.4
Q ss_pred HHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHH
Q 037956 75 DETIIKLHEQLGNRWSAIASRLPGRTDNEIKN 106 (245)
Q Consensus 75 D~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Kn 106 (245)
|..|..+....|..|..+|..| |=+..+|..
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567788899999999999999 877776644
No 121
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=45.73 E-value=34 Score=24.40 Aligned_cols=43 Identities=26% Similarity=0.226 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 69 NFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
..|+.|-+.|. ++ ..|-.-.+||..| |-+...|+.+.+..+++
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 36666655544 45 7788899999999 99999999998877763
No 122
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=45.59 E-value=38 Score=25.18 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 74 EDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 74 ED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
.+..++.++-..|-...+||..| |-+...|+.+.+..+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44556666667788999999999 99999999988876653
No 123
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=45.14 E-value=33 Score=23.75 Aligned_cols=43 Identities=30% Similarity=0.328 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 69 NFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
..|+.|-+.|. ++ ..|-.-.+||..| |-+...|+.+.+..+++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 36666655544 44 6788899999999 99999999988877653
No 124
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=44.00 E-value=38 Score=22.19 Aligned_cols=43 Identities=21% Similarity=0.191 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 68 GNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 68 ~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
..+|+.|-+.|.- + ..|..-.+||..| |-+...|+.+.+..++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQ 52 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 3467666655544 4 6678899999999 8999999998887665
No 125
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=43.92 E-value=15 Score=30.17 Aligned_cols=25 Identities=28% Similarity=0.630 Sum_probs=19.2
Q ss_pred CCCCCCCCCHHHHHHHH--------HHHHHhCC
Q 037956 10 PSLRKGSWTPEEDRKLI--------AYIRRYGI 34 (245)
Q Consensus 10 p~lkkg~WT~EEDe~L~--------~~V~~~g~ 34 (245)
|.-..|-||+|+|+.|. .++++||.
T Consensus 110 P~N~pGIWT~eDDe~L~s~d~~dikrL~kKHG~ 142 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLKSNDQEQIRKLVKKHGT 142 (168)
T ss_dssp CTTCTTCCCHHHHHHHHSCCHHHHHHHHHHHCH
T ss_pred CCCCCCCCChhhHHHHHcCCHHHHHHHHHHhCH
Confidence 55668899999999885 46677764
No 126
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=43.83 E-value=29 Score=25.92 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=25.1
Q ss_pred HhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 84 QLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 84 ~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
..|-...+||..| |-+...|+.+.+..+++
T Consensus 122 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 122 IRGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 4567799999999 99999999998876654
No 127
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=43.73 E-value=29 Score=26.37 Aligned_cols=29 Identities=28% Similarity=0.580 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCcHHHHhhhCCCCCHHHHHH
Q 037956 77 TIIKLHEQLGNRWSAIASRLPGRTDNEIKN 106 (245)
Q Consensus 77 ~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Kn 106 (245)
.|..+....|..|..+|..| |=+..+|..
T Consensus 26 ~l~~Ia~~LG~~Wk~LAR~L-Glse~dId~ 54 (115)
T 2o71_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (115)
T ss_dssp HHHHHHHHCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46666788999999999999 777776644
No 128
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=43.37 E-value=48 Score=23.59 Aligned_cols=45 Identities=20% Similarity=0.157 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 67 RGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 67 k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
....|+.|-+.|.-++ .|..-.+||..| |-+...|+.+....+++
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4467887777665544 788999999999 99999999999887764
No 129
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=42.95 E-value=28 Score=26.48 Aligned_cols=29 Identities=28% Similarity=0.580 Sum_probs=23.4
Q ss_pred HHHHHHHHhCCcHHHHhhhCCCCCHHHHHH
Q 037956 77 TIIKLHEQLGNRWSAIASRLPGRTDNEIKN 106 (245)
Q Consensus 77 ~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Kn 106 (245)
.|..+....|..|..+|..| |=+..+|..
T Consensus 26 ~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 26 QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 46666888999999999999 877776644
No 130
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=42.26 E-value=39 Score=27.04 Aligned_cols=37 Identities=14% Similarity=0.027 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 77 TIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 77 ~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
.++.++-..|-...+||..| |-+...|+.+.+..+++
T Consensus 194 ~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 194 LVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 33444444577899999999 99999999988876653
No 131
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=38.97 E-value=37 Score=25.24 Aligned_cols=31 Identities=32% Similarity=0.596 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHH
Q 037956 75 DETIIKLHEQLGNRWSAIASRLPGRTDNEIKN 106 (245)
Q Consensus 75 D~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Kn 106 (245)
+..|..+....|..|..+|.+| |=+..+|..
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4456667788899999999999 877777755
No 132
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=36.18 E-value=62 Score=21.26 Aligned_cols=33 Identities=12% Similarity=0.016 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHH
Q 037956 73 EEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKN 106 (245)
Q Consensus 73 EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Kn 106 (245)
-|.+.|.++...+|++.++.|+.| |=+...+..
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L-Gisr~tL~r 51 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI-GIDLSNLYR 51 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 467788999999999999999998 655544443
No 133
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=36.18 E-value=15 Score=28.54 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=24.3
Q ss_pred HhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 84 QLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 84 ~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
..|-...+||..| |-+...|+++.+..+++
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3466788999999 89999999998877653
No 134
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=35.80 E-value=50 Score=20.85 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 75 DETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 75 D~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
+..++.+ ...|-.-.+||..| |-+...|+.+.+..+++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3445555 35677889999999 99999999998877763
No 135
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=31.32 E-value=39 Score=23.66 Aligned_cols=42 Identities=33% Similarity=0.251 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 70 FTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 70 WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
.|+.|-+.| .++ ..|-.-.+||..| |-+...|+.+.+..+++
T Consensus 30 Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 30 LTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp CCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 555665554 444 5788889999999 99999999998877753
No 136
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=30.96 E-value=76 Score=23.59 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 74 EDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 74 ED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
.+..++.++-..|-.-.+||..+ |-+...|+.+.+..+++
T Consensus 26 ~~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 26 KQMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34556666667789999999999 99999999988876653
No 137
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=30.18 E-value=1.8e+02 Score=22.05 Aligned_cols=66 Identities=12% Similarity=0.170 Sum_probs=41.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccccccccc------ccCCCC----CCCCCHHHHHHHHHHHHH
Q 037956 15 GSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY------LRPDIR----RGNFTQEEDETIIKLHEQ 84 (245)
Q Consensus 15 g~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~------L~p~i~----k~~WT~EED~~Ll~lv~~ 84 (245)
.+.|.++-..++.++. .|. ...+||+.++- +.. .-.||... +.+... ....+.++.+.|++++..
T Consensus 24 ~~~s~e~r~~ii~l~~-~G~-s~~~IA~~lgi--s~~-TV~rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QGV-RPCDISRQLRV--SHG-CVSKILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HTC-CHHHHHHHHTC--CSH-HHHHHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CHH-HHHHHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4688888888888774 464 77899999884 333 33344432 222211 234777777788888765
Q ss_pred h
Q 037956 85 L 85 (245)
Q Consensus 85 ~ 85 (245)
.
T Consensus 99 ~ 99 (159)
T 2k27_A 99 N 99 (159)
T ss_dssp C
T ss_pred C
Confidence 4
No 138
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=30.14 E-value=54 Score=25.58 Aligned_cols=41 Identities=10% Similarity=0.155 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHhCC-cHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 73 EEDETIIKLHEQLGN-RWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 73 EED~~Ll~lv~~~G~-kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
+-|..|+.+.+..|. .|..||+.+ |-+...|..|...+...
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~ 44 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEED 44 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 457788888887774 699999999 99999999999987764
No 139
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=28.56 E-value=39 Score=24.40 Aligned_cols=30 Identities=13% Similarity=0.386 Sum_probs=23.2
Q ss_pred HHHHHHHHHhCCcHHHHhhhCCCCCHHHHHH
Q 037956 76 ETIIKLHEQLGNRWSAIASRLPGRTDNEIKN 106 (245)
Q Consensus 76 ~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Kn 106 (245)
..+..++...|..|..+|.+| |=+..+|..
T Consensus 15 ~~~~~ia~~lg~~Wk~Lar~L-g~~~~~I~~ 44 (99)
T 1fad_A 15 VAFDIVCDNVGRDWKRLAREL-KVSEAKMDG 44 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 345566778899999999999 877776654
No 140
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=28.06 E-value=78 Score=22.38 Aligned_cols=33 Identities=12% Similarity=0.046 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHH
Q 037956 73 EEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKN 106 (245)
Q Consensus 73 EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Kn 106 (245)
-|...|.+++..+|++.++.|+.| |=+...+..
T Consensus 51 ~E~~~i~~aL~~~~gn~~~aA~~L-GIsr~tL~r 83 (91)
T 1ntc_A 51 LERTLLTTALRHTQGHKQEAARLL-GWGAATLTA 83 (91)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH-CcCHHHHHH
Confidence 467788899999999999999999 766655543
No 141
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=27.51 E-value=1.2e+02 Score=21.98 Aligned_cols=45 Identities=22% Similarity=0.244 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 67 RGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 67 k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
....|+.|-+.|.- + ..|-.-.+||..| |-+...|+.+....+++
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 45578877776644 3 3688899999999 89999999988877764
No 142
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=25.82 E-value=1.8e+02 Score=21.66 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHH
Q 037956 67 RGNFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWH 109 (245)
Q Consensus 67 k~~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~ 109 (245)
....+.++-..++.++. -|..-.+||..| |.+...|.....
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G~s~~~iA~~l-gis~~TV~rw~~ 70 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QGVRPCDISRQL-RVSHGCVSKILG 70 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TTCCHHHHHHHH-TCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cCCCHHHHHHHH-CcCHHHHHHHHH
Confidence 34688888888888885 588899999999 888877766433
No 143
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=25.21 E-value=2.1e+02 Score=21.25 Aligned_cols=77 Identities=13% Similarity=0.166 Sum_probs=47.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccCcccccccccccccc------ccCCCC----CCCCCHHHHHHHHHHHHH
Q 037956 15 GSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNY------LRPDIR----RGNFTQEEDETIIKLHEQ 84 (245)
Q Consensus 15 g~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~------L~p~i~----k~~WT~EED~~Ll~lv~~ 84 (245)
...|.++-..++.++. .|. ...+||+.++- + ...-.||... +.+... ....+.+..+.|++++..
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~-s~~~iA~~lgi--s-~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 105 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGV-RPCDISRQLRV--S-HGCVSKILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQ 105 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTC-CHHHHHHHHTC--C-HHHHHHHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--C-HHHHHHHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHh
Confidence 4689888888888774 464 67889999884 3 3333344432 222222 234788888888888876
Q ss_pred hC-CcHHHHhhhC
Q 037956 85 LG-NRWSAIASRL 96 (245)
Q Consensus 85 ~G-~kW~~IA~~l 96 (245)
.+ -.-.+|+..|
T Consensus 106 ~~~~s~~~i~~~l 118 (149)
T 1k78_A 106 NPTMFAWEIRDRL 118 (149)
T ss_dssp CTTCCHHHHHHHH
T ss_pred CcchhHHHHHHHH
Confidence 53 2234555544
No 144
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=25.06 E-value=1.2e+02 Score=22.16 Aligned_cols=28 Identities=14% Similarity=0.162 Sum_probs=24.3
Q ss_pred CCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 86 GNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 86 G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
|-.+.+||..| |-+...|+++-+..+++
T Consensus 39 ~~s~~EIA~~l-giS~~tVr~~~~rAlkk 66 (99)
T 3t72_q 39 DYTLEEVGKQF-DVTRERIRQIEAKALRK 66 (99)
T ss_pred CCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46899999999 99999999998887764
No 145
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=24.17 E-value=44 Score=23.88 Aligned_cols=29 Identities=31% Similarity=0.673 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHH
Q 037956 72 QEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKN 106 (245)
Q Consensus 72 ~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Kn 106 (245)
.+|-..|+. |..|..+|.+| |=+...|.+
T Consensus 12 r~~l~~lL~-----g~dW~~LA~~L-g~~~~~I~~ 40 (85)
T 1ngr_A 12 REEVEKLLN-----GDTWRHLAGEL-GYQPEHIDS 40 (85)
T ss_dssp THHHHHHSC-----TTHHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHhC-----cCCHHHHHHHc-CCCHHHHHH
Confidence 455556665 99999999999 777776665
No 146
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=24.11 E-value=1.5e+02 Score=22.31 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 73 EEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 73 EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
+-|..|+.+.+..| -.+..||+.+ |-+...|..+...+.+.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~ 50 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKL 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 44667777777766 4799999999 89999999999887664
No 147
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.86 E-value=1.1e+02 Score=17.52 Aligned_cols=38 Identities=11% Similarity=0.199 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHH
Q 037956 69 NFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHW 108 (245)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw 108 (245)
..+.++-..++.++ .-|-...+||+.| |-+...|+.+.
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv~~~~ 42 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCIRVYL 42 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHH
Confidence 35666666677665 4577899999999 88888877644
No 148
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=22.39 E-value=98 Score=25.82 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 69 NFTQEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 69 ~WT~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
..++.|- .++.++ ..|-.-.+||..| |.+...|+.|-+..+++
T Consensus 197 ~L~~~er-evl~L~-~~G~s~~EIA~~L-~iS~~TVk~~l~ra~~k 239 (258)
T 3clo_A 197 ILSEREK-EILRCI-RKGLSSKEIAATL-YISVNTVNRHRQNILEK 239 (258)
T ss_dssp SSCHHHH-HHHHHH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHH-HHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3454444 455555 5788999999999 99999999998887753
No 149
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=22.03 E-value=1.1e+02 Score=21.59 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHH
Q 037956 72 QEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKN 106 (245)
Q Consensus 72 ~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Kn 106 (245)
.-|.+.|.+++..++++..+.|+.| |=+...+..
T Consensus 40 ~~Er~~I~~aL~~~~GN~s~AA~~L-GISR~TLyr 73 (81)
T 1umq_A 40 RVRWEHIQRIYEMCDRNVSETARRL-NMHRRTLQR 73 (81)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHH-TSCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHh-CCCHHHHHH
Confidence 4466778899999999999999998 666655543
No 150
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=22.00 E-value=32 Score=27.32 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=27.3
Q ss_pred ccccccccCccccccccccccccccCCCCCCCCCHHHHHHHHHH
Q 037956 38 SEMPKYAGLLRCGKSCRLRWMNYLRPDIRRGNFTQEEDETIIKL 81 (245)
Q Consensus 38 ~~Ia~~~~~~Rt~kqCr~Rw~n~L~p~i~k~~WT~EED~~Ll~l 81 (245)
..||.++.+ +++.+||..+. +. ..||+||++.|.+-
T Consensus 119 ~~vA~~ikg-kt~eeir~~f~------I~-nd~t~eEe~~ir~e 154 (160)
T 2p1m_A 119 QTVADMIKG-KTPEEIRTTFN------IK-NDFTPEEEEEVRRE 154 (160)
T ss_dssp HHHHHTTTT-CCHHHHHHHTT------CC-CCCCHHHHHHHHHH
T ss_pred HHHHHHHcC-CCHHHHHHHcC------CC-CCCCHHHHHHHHHh
Confidence 467778887 99999998774 32 34999999987653
No 151
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=21.72 E-value=32 Score=25.02 Aligned_cols=33 Identities=21% Similarity=0.498 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhCCcHHHHhhhCCCCCHHHHHH
Q 037956 72 QEEDETIIKLHEQLGNRWSAIASRLPGRTDNEIKN 106 (245)
Q Consensus 72 ~EED~~Ll~lv~~~G~kW~~IA~~lpgRT~~~~Kn 106 (245)
.+|-+.|+.. ...|..|..+|.+| |=+...|..
T Consensus 5 r~~v~~ll~~-~~~G~dW~~LA~~L-g~~~~~I~~ 37 (91)
T 2ib1_A 5 QEEVQRLLMM-GEPAKGWQELAGHL-GYQAEAVET 37 (91)
T ss_dssp HHTTHHHHTT-TCCSSTHHHHHHHH-TCCHHHHHH
T ss_pred HHHHHHHhcC-CCCCccHHHHHHHc-CCCHHHHHH
Confidence 4556677773 55689999999999 888888776
No 152
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=20.95 E-value=2.4e+02 Score=20.33 Aligned_cols=88 Identities=13% Similarity=0.127 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccccCccccccccccccccccC------CCCCCCCCHHHHHHHHHHHHHhCCc
Q 037956 15 GSWTPEEDRKLIAYIRRYGIWNWSEMPKYAGLLRCGKSCRLRWMNYLRP------DIRRGNFTQEEDETIIKLHEQLGNR 88 (245)
Q Consensus 15 g~WT~EEDe~L~~~V~~~g~~nW~~Ia~~~~~~Rt~kqCr~Rw~n~L~p------~i~k~~WT~EED~~Ll~lv~~~G~k 88 (245)
...|.++-..++.++. -|. .-.+||+.+|- +...+ .||...... .......+.+++..|+.+...-+-.
T Consensus 5 ~~~s~~~r~~i~~~~~-~G~-s~~~ia~~lgi--s~~Tv-~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~s 79 (141)
T 1u78_A 5 SALSDTERAQLDVMKL-LNV-SLHEMSRKISR--SRHCI-RVYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCKT 79 (141)
T ss_dssp CCCCHHHHHHHHHHHH-TTC-CHHHHHHHHTC--CHHHH-HHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCCC
T ss_pred ccCCHHHHHHHHHHHH-cCC-CHHHHHHHHCc--CHHHH-HHHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCCC
Confidence 4578888777777663 464 67899999884 33333 334332211 1122357888888888773322234
Q ss_pred HHHHhhhCCC--CCHHHHHHHH
Q 037956 89 WSAIASRLPG--RTDNEIKNHW 108 (245)
Q Consensus 89 W~~IA~~lpg--RT~~~~Knrw 108 (245)
=.+|+..| | -+...|....
T Consensus 80 ~~~i~~~l-g~~~s~~tV~r~l 100 (141)
T 1u78_A 80 ARDIRNEL-QLSASKRTILNVI 100 (141)
T ss_dssp HHHHHHHT-TCCSCHHHHHHHH
T ss_pred HHHHHHHH-CCCccHHHHHHHH
Confidence 57888888 5 5666666544
No 153
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=20.39 E-value=1.4e+02 Score=23.55 Aligned_cols=41 Identities=22% Similarity=0.268 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhC-CcHHHHhhhCCCCCHHHHHHHHHHhhhh
Q 037956 73 EEDETIIKLHEQLG-NRWSAIASRLPGRTDNEIKNHWHSRLSK 114 (245)
Q Consensus 73 EED~~Ll~lv~~~G-~kW~~IA~~lpgRT~~~~Knrw~~~lkk 114 (245)
+-|..|+.+.+..| -.+..||+.+ |-+...|..|...+...
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~ 68 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRES 68 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 55677888887777 4799999999 89999999999877653
No 154
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=20.13 E-value=22 Score=28.52 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=0.0
Q ss_pred HhCCcHHHHhhhCCCCCHHHHHHHHHHhhh
Q 037956 84 QLGNRWSAIASRLPGRTDNEIKNHWHSRLS 113 (245)
Q Consensus 84 ~~G~kW~~IA~~lpgRT~~~~Knrw~~~lk 113 (245)
..|-...+||..| |-+...|+.+.+..++
T Consensus 212 ~~g~s~~EIA~~l-gis~~tV~~~~~ra~~ 240 (243)
T 1l0o_C 212 YKDQTQSEVASRL-GISQVQMSRLEKKILQ 240 (243)
T ss_dssp ------------------------------
T ss_pred hcCCCHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 3456688999998 8888888887776554
Done!