BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037957
(841 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L1I|A Chain A, Nmr Structure Of The Hltf Hiran Domain
Length = 122
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 149 VDGMSEATLRTFIVGRRYSDEKEIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGY 208
VD + +LR +VG RY + ++L RDPNN D NAIKV + + +G+
Sbjct: 6 VDSVLFGSLRGHVVGLRYY-TGVVNNNEMVALQRDPNNPYDKNAIKVNNVNG---NQVGH 61
Query: 209 LPKELSEYLSPLMEKYSLSFEGFV 232
L KEL+ L+ +M+ EG V
Sbjct: 62 LKKELAGALAYIMDNKLAQIEGVV 85
>pdb|3K2Y|A Chain A, Crystal Structure Of Protein Lp_0118 From Lactobacillus
Plantarum,Northeast Structural Genomics Consortium
Target Lpr91b
pdb|3K2Y|B Chain B, Crystal Structure Of Protein Lp_0118 From Lactobacillus
Plantarum,Northeast Structural Genomics Consortium
Target Lpr91b
pdb|3K2Y|C Chain C, Crystal Structure Of Protein Lp_0118 From Lactobacillus
Plantarum,Northeast Structural Genomics Consortium
Target Lpr91b
pdb|3K2Y|D Chain D, Crystal Structure Of Protein Lp_0118 From Lactobacillus
Plantarum,Northeast Structural Genomics Consortium
Target Lpr91b
Length = 109
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 8/68 (11%)
Query: 161 IVGRRYSDE-----KEIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSE 215
+VG RY D+ +++G + L R+ N D NAI V++ LGY+ + ++
Sbjct: 13 VVGERYVDDIVATLTTLRVGMAVLLQRESGNQYDDNAISVWTLQHA---KLGYIARYQNQ 69
Query: 216 YLSPLMEK 223
+ LM++
Sbjct: 70 PYATLMDQ 77
>pdb|1W6J|A Chain A, Structure Of Human Osc In Complex With Ro 48-8071
Length = 732
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 675 LNCEIGMKSWFYGEDGEKCGVEQLALQYYA 704
LNCE G ++W Y +D E+ G EQ L+ YA
Sbjct: 27 LNCERGRQTWTYLQD-ERAGREQTGLEAYA 55
>pdb|1W6K|A Chain A, Structure Of Human Osc In Complex With Lanosterol
Length = 732
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 675 LNCEIGMKSWFYGEDGEKCGVEQLALQYYA 704
LNCE G ++W Y +D E+ G EQ L+ YA
Sbjct: 27 LNCERGRQTWTYLQD-ERAGREQTGLEAYA 55
>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|C Chain C, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|3DBH|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBL|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBR|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 531
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 340 WFRLSNISYPEVSNSREAVRELIDNGYICSSEDTNELHDAIKDICNLLTVSEL 392
W+ +N P+ +E R+LI G I ED +AIK++ L +++
Sbjct: 227 WYSETNGRIPKTYKEKEDFRDLIRQG-ILKPEDEENFEEAIKNVNTALNTTQI 278
>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 529
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 340 WFRLSNISYPEVSNSREAVRELIDNGYICSSEDTNELHDAIKDICNLLTVSEL 392
W+ +N P+ +E R+LI G I ED +AIK++ L +++
Sbjct: 225 WYSETNGRIPKTYKEKEDFRDLIRQG-ILKPEDEENFEEAIKNVNTALNTTQI 276
>pdb|2X06|A Chain A, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|B Chain B, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|C Chain C, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|D Chain D, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|E Chain E, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|F Chain F, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|G Chain G, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
pdb|2X06|H Chain H, Sulfolactate Dehydrogenase From Methanocaldococcus
Jannaschii
Length = 344
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 141 PEHDVNVTVDGMSEATLRTFI---VGRRYSDEKEIKIGAHISLSRDPNNVKDPNAIKVFS 197
PE D +T D +A L+ F +GR +K+G +I+ D VK+ A V
Sbjct: 22 PEEDAKITADVFVDADLKGFTSHGIGRFPQYITALKLG-NINPKPDIKIVKESPATAVID 80
Query: 198 ADSGCCKVLGYLPKELS 214
D G +V+G EL+
Sbjct: 81 GDLGLGQVVGKKAXELA 97
>pdb|3INO|A Chain A, 1.95a Resolution Structure Of Protective Antigen Domain 4
pdb|3INO|B Chain B, 1.95a Resolution Structure Of Protective Antigen Domain 4
Length = 143
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 353 NSREAVRELIDNGYICSSEDTNELHDAIKDICNLLTVSELRE 394
N + +R+++ +GYI EDT L + I D ++L +S LR+
Sbjct: 38 NIDKDIRKIL-SGYIVEIEDTEGLKEVINDRYDMLNISSLRQ 78
>pdb|3ETB|J Chain J, Crystal Structure Of The Engineered Neutralizing Antibody
M18 Complexed With Anthrax Protective Antigen Domain 4
pdb|3ETB|K Chain K, Crystal Structure Of The Engineered Neutralizing Antibody
M18 Complexed With Anthrax Protective Antigen Domain 4
pdb|3ETB|L Chain L, Crystal Structure Of The Engineered Neutralizing Antibody
M18 Complexed With Anthrax Protective Antigen Domain 4
pdb|3ETB|M Chain M, Crystal Structure Of The Engineered Neutralizing Antibody
M18 Complexed With Anthrax Protective Antigen Domain 4
Length = 144
Score = 30.4 bits (67), Expect = 4.7, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 353 NSREAVRELIDNGYICSSEDTNELHDAIKDICNLLTVSELRE 394
N + +R+++ +GYI EDT L + I D ++L +S LR+
Sbjct: 39 NIDKDIRKIL-SGYIVEIEDTEGLKEVINDRYDMLNISSLRQ 79
>pdb|3H5T|A Chain A, Crystal Structure Of A Transcriptional Regulator, Lacl
Family Protein From Corynebacterium Glutamicum
Length = 366
Score = 30.0 bits (66), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 175 GAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSEYLSPLME 222
G H++L+RD V PN +K F A K++ EY+ P +E
Sbjct: 305 GTHMALARDLTTVIQPNKLKGFKAGETLLKMID------KEYVEPEVE 346
>pdb|1B6R|A Chain A, N5-Carboxyaminoimidazole Ribonucleotide Synthetase From E.
Coli
pdb|3ETH|A Chain A, Crystal Structure Of E. Coli Purk In Complex With Mgatp
pdb|3ETH|B Chain B, Crystal Structure Of E. Coli Purk In Complex With Mgatp
pdb|3ETJ|A Chain A, Crystal Structure E. Coli Purk In Complex With Mg, Adp,
And Pi
pdb|3ETJ|B Chain B, Crystal Structure E. Coli Purk In Complex With Mg, Adp,
And Pi
Length = 355
Score = 30.0 bits (66), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 99 LANYVAVEDYNSNHWRSTENTTSHQRINCDEKT--PLSSPHINGPEHDVNVTVDGMSEAT 156
L N +A +NS HW + S ++ T PL P +N P +N+ ++
Sbjct: 235 LINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDVNYDW 294
Query: 157 LRTFIVGRRYSDEKEIKIG---AHISLS 181
L+ +V + D KE++ G H++L+
Sbjct: 295 LKLPLVHLHWYD-KEVRPGRKVGHLNLT 321
>pdb|1B6S|A Chain A, Structure Of N5-Carboxyaminoimidazole Ribonucleotide
Synthetase
pdb|1B6S|B Chain B, Structure Of N5-Carboxyaminoimidazole Ribonucleotide
Synthetase
pdb|1B6S|C Chain C, Structure Of N5-Carboxyaminoimidazole Ribonucleotide
Synthetase
pdb|1B6S|D Chain D, Structure Of N5-Carboxyaminoimidazole Ribonucleotide
Synthetase
Length = 355
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 99 LANYVAVEDYNSNHWRSTENTTSHQRINCDEKT--PLSSPHINGPEHDVNVTVDGMSEAT 156
L N +A +NS HW + S ++ T PL P +N P +N+ ++
Sbjct: 235 LINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVVNNPSVMINLIGSDVNYDW 294
Query: 157 LRTFIVGRRYSDEKEIKIG---AHISLS 181
L+ +V + D KE++ G H++L+
Sbjct: 295 LKLPLVHLHWYD-KEVRPGRKVGHLNLT 321
>pdb|3G5C|A Chain A, Structural And Biochemical Studies On The Ectodomain Of
Human Adam22
pdb|3G5C|B Chain B, Structural And Biochemical Studies On The Ectodomain Of
Human Adam22
Length = 510
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 627 DSWVRAGSRVALQRRVL--RLGKPPRRWKIPSFSESIKRKITEIHVQGRPLNCEIGMK-- 682
D+W++ R L +L +G PR ++ S T + QGR LNC G
Sbjct: 356 DTWIQCNKRDVLCGYLLCTNIGNIPRLGELDGEITS-----TLVVQQGRTLNCSGGHVKL 410
Query: 683 ----SWFYGEDGEKCGVEQLALQY 702
Y EDG CG + + L++
Sbjct: 411 EEDVDLGYVEDGTPCGPQMMCLEH 434
>pdb|3MHZ|A Chain A, 1.7a Structure Of 2-Fluorohistidine Labeled Protective
Antigen
pdb|3Q8F|A Chain A, Crystal Structure Of 2-Fluorohistine Labeled Protective
Antigen (Ph 5.8)
Length = 735
Score = 29.3 bits (64), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 358 VRELIDNGYICSSEDTNELHDAIKDICNLLTVSELRE 394
+R+++ +GYI EDT L + I D ++L +S LR+
Sbjct: 635 IRKIL-SGYIVEIEDTEGLKEVINDRYDMLNISSLRQ 670
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,600,481
Number of Sequences: 62578
Number of extensions: 943123
Number of successful extensions: 1807
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1784
Number of HSP's gapped (non-prelim): 35
length of query: 841
length of database: 14,973,337
effective HSP length: 107
effective length of query: 734
effective length of database: 8,277,491
effective search space: 6075678394
effective search space used: 6075678394
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)