Query 037957
Match_columns 841
No_of_seqs 280 out of 545
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 10:02:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037957.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037957hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l1i_A HLTF protein; hiran dom 99.9 4.9E-25 1.7E-29 207.7 -3.1 103 148-255 5-107 (122)
2 3k2y_A Uncharacterized protein 99.8 1.1E-20 3.6E-25 174.6 8.4 92 154-252 6-102 (109)
3 3qww_A SET and MYND domain-con 81.1 11 0.00039 42.1 12.8 64 562-626 341-410 (433)
4 2xev_A YBGF; tetratricopeptide 79.8 5.5 0.00019 34.5 7.9 78 567-646 45-123 (129)
5 3ma5_A Tetratricopeptide repea 79.2 3.4 0.00012 35.4 6.2 56 568-626 14-69 (100)
6 3n71_A Histone lysine methyltr 78.5 12 0.0004 42.7 12.1 64 562-625 352-420 (490)
7 1ri9_A FYN-binding protein; SH 77.7 1.1 3.9E-05 40.4 2.6 39 171-217 59-97 (102)
8 3qou_A Protein YBBN; thioredox 76.7 19 0.00064 37.0 12.1 67 434-500 37-110 (287)
9 2l6j_A TPR repeat-containing p 76.4 4 0.00014 34.3 5.8 60 568-630 11-71 (111)
10 3k9i_A BH0479 protein; putativ 75.4 4.1 0.00014 35.5 5.7 59 566-627 32-90 (117)
11 3rkv_A Putative peptidylprolyl 75.0 6.8 0.00023 36.0 7.4 63 566-631 68-131 (162)
12 4gco_A Protein STI-1; structur 74.2 7.3 0.00025 35.0 7.2 61 568-631 54-115 (126)
13 3vtx_A MAMA; tetratricopeptide 73.7 4.1 0.00014 38.0 5.6 60 567-629 113-173 (184)
14 2vgx_A Chaperone SYCD; alterna 72.7 9.9 0.00034 35.1 7.9 56 568-626 62-117 (148)
15 1na3_A Designed protein CTPR2; 72.3 9.3 0.00032 30.7 6.9 60 568-630 16-76 (91)
16 3gyz_A Chaperone protein IPGC; 71.7 6.6 0.00023 37.0 6.5 57 569-629 78-136 (151)
17 2kck_A TPR repeat; tetratricop 71.2 9.3 0.00032 31.5 6.7 59 568-627 47-106 (112)
18 2gtj_A FYN-binding protein; SH 70.8 3.7 0.00013 36.7 4.1 39 171-215 45-83 (96)
19 3vhs_A ATPase wrnip1; zinc fin 69.9 0.96 3.3E-05 30.5 0.1 13 32-44 17-29 (29)
20 2lni_A Stress-induced-phosphop 69.4 11 0.00038 32.2 7.1 62 566-630 55-117 (133)
21 3qwp_A SET and MYND domain-con 69.2 16 0.00054 40.7 9.9 70 555-625 322-398 (429)
22 3gyz_A Chaperone protein IPGC; 68.7 11 0.00037 35.5 7.3 63 565-631 41-104 (151)
23 2kat_A Uncharacterized protein 68.6 6.6 0.00023 33.8 5.4 60 567-629 25-85 (115)
24 1v66_A Protein inhibitor of ac 68.0 8.2 0.00028 31.9 5.2 43 379-422 6-48 (65)
25 1elw_A TPR1-domain of HOP; HOP 67.8 18 0.00061 29.9 7.9 59 568-629 45-104 (118)
26 2v5f_A Prolyl 4-hydroxylase su 67.8 14 0.00047 32.1 7.3 66 564-630 9-79 (104)
27 2xcb_A PCRH, regulatory protei 67.7 9.5 0.00033 34.4 6.5 56 568-626 59-114 (142)
28 2kc7_A BFR218_protein; tetratr 66.9 5.5 0.00019 33.1 4.3 61 569-631 8-69 (99)
29 4gcn_A Protein STI-1; structur 66.8 8.6 0.00029 34.4 5.9 59 569-627 50-112 (127)
30 1elr_A TPR2A-domain of HOP; HO 66.5 7.5 0.00026 33.1 5.3 61 567-627 44-108 (131)
31 3sz7_A HSC70 cochaperone (SGT) 65.2 8.2 0.00028 35.6 5.6 61 568-631 52-113 (164)
32 3upv_A Heat shock protein STI1 65.0 11 0.00037 32.8 6.1 56 568-626 45-100 (126)
33 2xcb_A PCRH, regulatory protei 64.9 14 0.00047 33.3 7.0 59 569-630 26-85 (142)
34 2lni_A Stress-induced-phosphop 63.9 11 0.00038 32.2 5.9 59 568-629 23-82 (133)
35 1na0_A Designed protein CTPR3; 63.8 16 0.00055 30.5 6.9 61 567-630 49-110 (125)
36 2dba_A Smooth muscle cell asso 62.9 12 0.00041 32.8 6.0 62 568-629 35-97 (148)
37 4gcn_A Protein STI-1; structur 62.6 7.8 0.00027 34.7 4.7 59 569-630 16-75 (127)
38 4gco_A Protein STI-1; structur 62.4 7.4 0.00025 34.9 4.6 62 565-630 18-80 (126)
39 3upv_A Heat shock protein STI1 62.4 12 0.00039 32.6 5.8 59 569-630 12-71 (126)
40 3sz7_A HSC70 cochaperone (SGT) 62.1 16 0.00056 33.4 7.1 60 568-630 18-78 (164)
41 2kck_A TPR repeat; tetratricop 61.8 7.8 0.00027 32.0 4.3 58 569-629 14-72 (112)
42 2vyi_A SGTA protein; chaperone 61.4 22 0.00074 29.9 7.3 61 567-630 52-113 (131)
43 2xev_A YBGF; tetratricopeptide 61.0 15 0.00051 31.6 6.2 62 569-630 10-72 (129)
44 1h1j_S THO1 protein; SAP domai 60.6 9.2 0.00031 30.2 4.1 36 384-420 5-40 (51)
45 1na0_A Designed protein CTPR3; 60.3 13 0.00045 31.1 5.6 57 567-626 15-71 (125)
46 2vgx_A Chaperone SYCD; alterna 60.2 18 0.00062 33.2 7.0 60 568-630 28-88 (148)
47 2dba_A Smooth muscle cell asso 60.0 13 0.00044 32.6 5.7 62 566-630 70-132 (148)
48 3q49_B STIP1 homology and U bo 59.7 14 0.00046 32.3 5.8 59 568-629 50-109 (137)
49 2rnn_A E3 SUMO-protein ligase 59.6 9.8 0.00034 35.0 4.7 41 379-420 32-72 (114)
50 2yhc_A BAMD, UPF0169 lipoprote 59.0 8.8 0.0003 37.6 4.8 65 568-632 154-218 (225)
51 1hxi_A PEX5, peroxisome target 58.8 9.6 0.00033 33.8 4.6 62 565-630 22-84 (121)
52 3vtx_A MAMA; tetratricopeptide 58.6 23 0.00079 32.7 7.5 57 568-627 12-68 (184)
53 2hr2_A Hypothetical protein; a 58.4 13 0.00045 36.0 5.7 59 565-625 62-129 (159)
54 2do1_A Nuclear protein HCC-1; 58.3 10 0.00036 30.4 4.1 35 384-419 10-44 (55)
55 1elw_A TPR1-domain of HOP; HOP 57.7 26 0.00088 28.9 7.0 59 568-629 11-70 (118)
56 1a17_A Serine/threonine protei 57.5 14 0.00048 33.1 5.6 61 567-630 53-114 (166)
57 1elr_A TPR2A-domain of HOP; HO 57.0 16 0.00053 31.0 5.6 57 568-627 11-67 (131)
58 3q49_B STIP1 homology and U bo 56.1 28 0.00095 30.2 7.2 60 568-630 16-76 (137)
59 3u4t_A TPR repeat-containing p 55.5 24 0.00084 34.5 7.4 58 569-629 11-68 (272)
60 4ga2_A E3 SUMO-protein ligase 55.3 20 0.00069 32.8 6.4 60 568-630 38-98 (150)
61 1hxi_A PEX5, peroxisome target 55.2 10 0.00035 33.7 4.1 59 568-629 58-117 (121)
62 2fo7_A Synthetic consensus TPR 54.6 19 0.00064 30.3 5.7 56 568-626 76-131 (136)
63 3ieg_A DNAJ homolog subfamily 54.2 25 0.00085 35.6 7.4 67 561-630 272-339 (359)
64 1zrj_A E1B-55KDA-associated pr 53.1 16 0.00055 28.7 4.3 35 384-419 10-44 (50)
65 1qqe_A Vesicular transport pro 52.9 49 0.0017 33.7 9.5 70 562-631 159-233 (292)
66 2r5s_A Uncharacterized protein 52.7 33 0.0011 31.9 7.5 58 568-626 115-172 (176)
67 2ff4_A Probable regulatory pro 52.6 84 0.0029 34.2 11.8 56 563-621 173-228 (388)
68 3urz_A Uncharacterized protein 52.5 19 0.00064 34.9 5.9 62 567-631 60-122 (208)
69 3qky_A Outer membrane assembly 52.2 28 0.00096 34.4 7.3 64 565-629 20-84 (261)
70 1qqe_A Vesicular transport pro 52.2 85 0.0029 31.9 11.2 65 563-627 119-187 (292)
71 2fbn_A 70 kDa peptidylprolyl i 52.0 36 0.0012 32.1 7.8 63 568-630 45-121 (198)
72 2kvu_A MKL/myocardin-like prot 50.4 16 0.00053 31.2 4.1 35 384-419 26-60 (75)
73 2vyi_A SGTA protein; chaperone 50.0 40 0.0014 28.2 7.0 59 568-629 19-78 (131)
74 1ihg_A Cyclophilin 40; ppiase 49.3 36 0.0012 36.7 8.1 63 565-630 277-340 (370)
75 3ro3_A PINS homolog, G-protein 48.2 26 0.0009 30.5 5.7 65 562-626 90-157 (164)
76 2ifu_A Gamma-SNAP; membrane fu 48.1 1.8E+02 0.0061 29.6 13.0 70 562-631 156-228 (307)
77 2yhc_A BAMD, UPF0169 lipoprote 48.1 25 0.00085 34.3 6.1 65 565-630 9-74 (225)
78 2fbn_A 70 kDa peptidylprolyl i 47.7 31 0.0011 32.6 6.5 63 565-630 92-155 (198)
79 2c2l_A CHIP, carboxy terminus 46.8 29 0.001 35.5 6.6 59 568-629 45-104 (281)
80 2ho1_A Type 4 fimbrial biogene 46.5 69 0.0023 30.8 9.0 59 567-626 111-169 (252)
81 3as5_A MAMA; tetratricopeptide 46.3 36 0.0012 30.5 6.5 56 568-626 117-172 (186)
82 2fo7_A Synthetic consensus TPR 46.0 30 0.001 28.9 5.6 56 568-626 42-97 (136)
83 3ro3_A PINS homolog, G-protein 45.7 33 0.0011 29.8 6.0 64 563-626 51-117 (164)
84 2vq2_A PILW, putative fimbrial 45.5 68 0.0023 29.8 8.6 61 568-629 83-145 (225)
85 4ga2_A E3 SUMO-protein ligase 45.4 25 0.00084 32.2 5.2 62 567-631 71-134 (150)
86 1p5q_A FKBP52, FK506-binding p 44.9 27 0.00092 36.9 6.1 61 567-630 202-263 (336)
87 3u4t_A TPR repeat-containing p 43.6 43 0.0015 32.6 7.0 62 569-630 45-107 (272)
88 3uq3_A Heat shock protein STI1 43.5 50 0.0017 31.5 7.4 61 566-629 144-205 (258)
89 1hh8_A P67PHOX, NCF-2, neutrop 43.4 30 0.001 32.7 5.6 57 567-626 43-99 (213)
90 3mkr_A Coatomer subunit epsilo 43.0 71 0.0024 32.8 8.9 60 562-623 66-126 (291)
91 2if4_A ATFKBP42; FKBP-like, al 43.0 24 0.00083 37.3 5.4 60 568-630 237-297 (338)
92 4i17_A Hypothetical protein; T 42.9 29 0.00099 33.4 5.6 60 568-630 49-109 (228)
93 3mkr_A Coatomer subunit epsilo 42.4 45 0.0015 34.3 7.2 59 569-630 174-233 (291)
94 2pl2_A Hypothetical conserved 42.3 42 0.0014 32.5 6.6 59 569-630 13-72 (217)
95 3as5_A MAMA; tetratricopeptide 42.3 54 0.0018 29.3 7.0 57 568-627 83-139 (186)
96 3hym_B Cell division cycle pro 41.4 62 0.0021 32.2 8.0 62 566-630 241-303 (330)
97 2hr2_A Hypothetical protein; a 41.4 26 0.00089 33.9 4.8 61 564-626 15-85 (159)
98 1a17_A Serine/threonine protei 41.3 39 0.0013 30.0 5.8 59 568-629 20-79 (166)
99 2vq2_A PILW, putative fimbrial 41.1 42 0.0014 31.3 6.3 57 567-626 119-175 (225)
100 3ro2_A PINS homolog, G-protein 40.6 40 0.0014 33.3 6.3 59 568-626 12-71 (338)
101 1jjr_A KU70, thyroid autoantig 40.6 19 0.00066 34.7 3.6 36 384-420 61-96 (151)
102 1xnf_A Lipoprotein NLPI; TPR, 40.6 40 0.0014 32.8 6.2 61 567-630 83-144 (275)
103 2c2l_A CHIP, carboxy terminus 40.5 66 0.0022 32.7 8.1 60 568-630 11-71 (281)
104 2ho1_A Type 4 fimbrial biogene 40.2 65 0.0022 31.0 7.7 57 567-626 77-133 (252)
105 3uq3_A Heat shock protein STI1 40.2 53 0.0018 31.4 7.0 55 568-626 12-66 (258)
106 1u3o_A Huntingtin-associated p 40.2 29 0.001 30.1 4.3 55 157-214 17-75 (82)
107 1w3b_A UDP-N-acetylglucosamine 38.8 91 0.0031 32.4 9.1 54 569-625 313-366 (388)
108 1hh8_A P67PHOX, NCF-2, neutrop 38.4 66 0.0023 30.1 7.2 63 568-630 78-154 (213)
109 3edt_B KLC 2, kinesin light ch 37.7 39 0.0013 32.7 5.6 66 562-627 86-156 (283)
110 4f3v_A ESX-1 secretion system 37.3 32 0.0011 36.3 5.1 63 566-629 176-240 (282)
111 1wao_1 Serine/threonine protei 36.8 41 0.0014 37.6 6.2 61 567-630 46-107 (477)
112 2ifu_A Gamma-SNAP; membrane fu 36.7 1.1E+02 0.0038 31.2 9.2 64 562-626 77-143 (307)
113 4gyw_A UDP-N-acetylglucosamine 36.6 36 0.0012 40.6 6.0 61 567-630 49-110 (723)
114 2out_A MU-like prophage flumu 36.5 14 0.00048 34.7 1.8 34 384-417 89-123 (131)
115 3rkv_A Putative peptidylprolyl 36.3 39 0.0013 30.7 5.0 67 563-630 14-96 (162)
116 1xnf_A Lipoprotein NLPI; TPR, 36.0 69 0.0024 31.0 7.1 62 566-630 48-110 (275)
117 4eqf_A PEX5-related protein; a 35.8 39 0.0013 34.9 5.5 57 567-626 253-309 (365)
118 1pc2_A Mitochondria fission pr 35.8 49 0.0017 31.8 5.7 56 575-631 49-105 (152)
119 4eqf_A PEX5-related protein; a 35.8 60 0.002 33.4 7.0 61 567-630 219-280 (365)
120 1kt0_A FKBP51, 51 kDa FK506-bi 35.7 76 0.0026 35.0 8.2 62 567-631 323-385 (457)
121 3edt_B KLC 2, kinesin light ch 35.5 40 0.0014 32.6 5.2 65 563-627 45-114 (283)
122 2q7f_A YRRB protein; TPR, prot 35.3 74 0.0025 30.1 7.1 57 567-626 63-119 (243)
123 4i17_A Hypothetical protein; T 35.3 96 0.0033 29.5 8.0 62 565-629 12-74 (228)
124 1fch_A Peroxisomal targeting s 35.1 64 0.0022 32.9 7.0 60 567-629 223-283 (368)
125 2q7f_A YRRB protein; TPR, prot 34.7 95 0.0033 29.3 7.8 58 567-627 131-188 (243)
126 2r5s_A Uncharacterized protein 34.4 17 0.0006 33.8 2.3 56 569-627 14-69 (176)
127 1w3b_A UDP-N-acetylglucosamine 34.0 72 0.0025 33.2 7.3 59 568-629 278-337 (388)
128 3qky_A Outer membrane assembly 33.9 41 0.0014 33.2 5.1 65 566-630 57-130 (261)
129 2e2e_A Formate-dependent nitri 33.7 93 0.0032 28.3 7.3 57 571-630 89-148 (177)
130 3k9i_A BH0479 protein; putativ 33.6 24 0.00083 30.4 3.0 57 574-630 3-60 (117)
131 3qou_A Protein YBBN; thioredox 33.6 57 0.002 33.3 6.3 57 568-625 226-282 (287)
132 2h6f_A Protein farnesyltransfe 33.4 47 0.0016 36.1 5.8 59 569-630 105-165 (382)
133 2y4t_A DNAJ homolog subfamily 33.4 61 0.0021 34.3 6.7 66 562-630 296-362 (450)
134 3nf1_A KLC 1, kinesin light ch 33.3 46 0.0016 32.9 5.3 64 563-626 155-223 (311)
135 2pl2_A Hypothetical conserved 33.0 69 0.0024 30.9 6.5 49 575-626 98-146 (217)
136 3hym_B Cell division cycle pro 32.8 1.2E+02 0.0041 30.1 8.5 57 568-627 132-188 (330)
137 1i07_A Epidermal growth factor 32.7 20 0.00068 28.2 2.0 39 171-218 19-57 (60)
138 1b07_A Protein (proto-oncogene 32.2 34 0.0012 27.5 3.4 41 171-219 21-61 (65)
139 4a1s_A PINS, partner of inscut 32.1 51 0.0018 34.5 5.8 59 568-626 55-114 (411)
140 3cv0_A Peroxisome targeting si 32.1 81 0.0028 31.3 7.0 60 567-629 178-238 (327)
141 3ieg_A DNAJ homolog subfamily 32.0 63 0.0022 32.5 6.2 63 568-630 241-305 (359)
142 2ond_A Cleavage stimulation fa 31.9 72 0.0025 32.6 6.8 64 567-630 209-274 (308)
143 2vsy_A XCC0866; transferase, g 31.5 90 0.0031 35.0 8.0 62 566-630 62-124 (568)
144 3sf4_A G-protein-signaling mod 30.9 60 0.0021 33.5 6.0 57 569-625 17-74 (406)
145 3gw4_A Uncharacterized protein 30.9 69 0.0024 29.5 5.9 66 562-627 108-176 (203)
146 2ond_A Cleavage stimulation fa 30.9 74 0.0025 32.5 6.6 59 567-627 105-163 (308)
147 3ro2_A PINS homolog, G-protein 30.8 52 0.0018 32.5 5.3 65 562-626 264-331 (338)
148 3gw4_A Uncharacterized protein 30.7 67 0.0023 29.6 5.8 65 562-626 67-135 (203)
149 2b86_A Cytoplasmic protein NCK 30.7 34 0.0012 27.9 3.2 41 171-220 22-62 (67)
150 4a1s_A PINS, partner of inscut 30.6 52 0.0018 34.4 5.5 67 561-627 303-372 (411)
151 1p5q_A FKBP52, FK506-binding p 30.6 70 0.0024 33.6 6.5 64 567-630 153-229 (336)
152 3ffl_A Anaphase-promoting comp 30.3 3.7E+02 0.012 26.2 10.9 70 554-624 57-148 (167)
153 1fch_A Peroxisomal targeting s 29.7 55 0.0019 33.5 5.4 58 566-626 256-313 (368)
154 1ihg_A Cyclophilin 40; ppiase 29.4 68 0.0023 34.5 6.2 63 568-630 230-306 (370)
155 3cv0_A Peroxisome targeting si 29.2 63 0.0022 32.1 5.6 58 566-626 211-268 (327)
156 3qwp_A SET and MYND domain-con 28.5 1.2E+02 0.0042 33.5 8.2 70 557-626 283-357 (429)
157 3nf1_A KLC 1, kinesin light ch 28.5 66 0.0023 31.7 5.6 63 565-627 115-182 (311)
158 2e2e_A Formate-dependent nitri 28.4 1.1E+02 0.0037 27.9 6.7 61 567-630 50-114 (177)
159 3u3w_A Transcriptional activat 28.4 1.1E+02 0.0038 30.8 7.4 66 560-625 195-264 (293)
160 2xpi_A Anaphase-promoting comp 28.3 57 0.002 36.1 5.6 64 564-630 519-583 (597)
161 2h6f_A Protein farnesyltransfe 28.0 35 0.0012 37.1 3.6 59 569-630 174-233 (382)
162 1nm7_A Peroxisomal membrane pr 27.6 49 0.0017 27.3 3.6 42 171-216 26-68 (69)
163 2gw1_A Mitochondrial precursor 27.4 1.1E+02 0.0039 32.6 7.7 58 567-627 45-102 (514)
164 2y4t_A DNAJ homolog subfamily 26.9 1.1E+02 0.0037 32.3 7.2 59 568-629 33-92 (450)
165 4gyw_A UDP-N-acetylglucosamine 26.8 91 0.0031 37.1 7.2 60 568-630 84-144 (723)
166 3sf4_A G-protein-signaling mod 26.5 74 0.0025 32.7 5.7 66 561-626 267-335 (406)
167 3urz_A Uncharacterized protein 26.5 77 0.0026 30.4 5.5 65 563-630 7-87 (208)
168 1dce_A Protein (RAB geranylger 25.7 4.4E+02 0.015 30.0 12.6 50 577-629 89-141 (567)
169 3fp2_A TPR repeat-containing p 24.9 1.4E+02 0.0047 32.3 7.8 60 567-629 316-376 (537)
170 1kt0_A FKBP51, 51 kDa FK506-bi 24.7 72 0.0025 35.2 5.5 62 569-630 276-350 (457)
171 2gw1_A Mitochondrial precursor 24.5 1.5E+02 0.005 31.7 7.9 58 569-630 14-72 (514)
172 2vsy_A XCC0866; transferase, g 24.4 1.1E+02 0.0039 34.1 7.2 63 565-630 95-161 (568)
173 1wx6_A Cytoplasmic protein NCK 24.4 1.1E+02 0.0036 26.0 5.4 42 171-218 35-76 (91)
174 4abn_A Tetratricopeptide repea 24.3 62 0.0021 35.8 4.9 60 567-629 108-169 (474)
175 2qfc_A PLCR protein; TPR, HTH, 24.0 1.5E+02 0.0053 29.7 7.5 64 562-625 197-264 (293)
176 2xpi_A Anaphase-promoting comp 23.8 1.5E+02 0.0053 32.5 8.1 58 568-625 482-543 (597)
177 2lx7_A GAS-7, growth arrest-sp 23.6 43 0.0015 26.9 2.5 39 171-217 22-60 (60)
178 4abn_A Tetratricopeptide repea 23.5 86 0.0029 34.7 5.8 56 575-630 235-291 (474)
179 1cka_A C-CRK N-terminal SH3 do 23.5 62 0.0021 24.8 3.4 37 171-215 19-55 (57)
180 3n71_A Histone lysine methyltr 23.3 1.4E+02 0.0046 33.8 7.5 58 569-626 317-379 (490)
181 2jw4_A Cytoplasmic protein NCK 23.2 63 0.0021 26.3 3.5 41 171-220 25-65 (72)
182 2qfc_A PLCR protein; TPR, HTH, 22.8 1.2E+02 0.004 30.6 6.3 65 562-626 156-224 (293)
183 1a62_A RHO; transcription term 22.6 91 0.0031 29.1 4.8 37 380-417 3-40 (130)
184 1wxb_A Epidermal growth factor 22.5 68 0.0023 25.7 3.5 39 171-218 25-63 (68)
185 1u5s_A Cytoplasmic protein NCK 22.4 1E+02 0.0034 24.8 4.6 42 171-218 24-65 (71)
186 3q15_A PSP28, response regulat 21.3 1.2E+02 0.004 31.8 6.1 64 562-626 223-289 (378)
187 1jjr_A KU70, thyroid autoantig 21.3 20 0.00068 34.6 0.0 34 384-418 115-148 (151)
188 3ulq_A Response regulator aspa 21.3 1.4E+02 0.0047 31.2 6.6 64 562-626 225-292 (383)
189 1wao_1 Serine/threonine protei 21.1 99 0.0034 34.4 5.7 58 570-630 15-73 (477)
190 1wxt_A Hypothetical protein FL 21.0 1.3E+02 0.0046 23.9 5.1 39 171-218 25-63 (68)
191 1gl5_A Tyrosine-protein kinase 20.5 79 0.0027 25.2 3.5 39 171-217 20-58 (67)
No 1
>2l1i_A HLTF protein; hiran domain, transcription factor, DNA repair, transc regulation, transcription, structural genomics, structural consortium, SGC; NMR {Homo sapiens}
Probab=99.88 E-value=4.9e-25 Score=207.73 Aligned_cols=103 Identities=31% Similarity=0.418 Sum_probs=94.1
Q ss_pred cccccccceEEEEEeeeeeccCcccCCCCeEEEEeCCCCCCCCCceEEEecCCCccccccccccchhhhcccccccCCCc
Q 037957 148 TVDGMSEATLRTFIVGRRYSDEKEIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSEYLSPLMEKYSLS 227 (841)
Q Consensus 148 ~~~~~~~~~~~~~IvG~~yy~~~~~~~ge~v~L~REP~N~~D~nAI~V~~~~g~~~~~lGyipr~~a~~la~l~D~g~~~ 227 (841)
..+....|.++++|||++||++ .+++|+.|.|+|||+||||+|||+|.|.+| .+||||||.+|++++|+||+|.+.
T Consensus 5 ~~~~~l~g~~~~~I~G~ry~~g-~l~~G~~l~L~REp~N~yD~nAI~V~~~~g---~~vGYvPr~~a~~la~lmD~g~~~ 80 (122)
T 2l1i_A 5 EVDSVLFGSLRGHVVGLRYYTG-VVNNNEMVALQRDPNNPYDKNAIKVNNVNG---NQVGHLKKELAGALAYIMDNKLAQ 80 (122)
T ss_dssp HHTTCCCCBCCCCBCCSTTTTS-CCCSSSCEECCCCTTCTTHHHHHHCCCTTB---GGGGGHHHHHHHHHHHHTTSCCEE
T ss_pred cceeEEEeEEEEEEEEEecccC-CCCCCCEEEEEECCCCCCChhHEEEECCCC---CEEEEecHHHHHHHHhhccCCeEE
Confidence 3456777999999999999999 799999999999999999999999999999 999999999999999999999999
Q ss_pred eeEEEeecCCCCCceeEEEEEEEeccCC
Q 037957 228 FEGFVISAPKHSLDVVQIKITYHKIESD 255 (841)
Q Consensus 228 ~~g~v~~~~~~~~~~~pi~i~~~~~~s~ 255 (841)
++|+|+. ...+.++|||+|++|+++++
T Consensus 81 veg~v~~-g~~~~~~~pi~l~~~~~~~~ 107 (122)
T 2l1i_A 81 IEGVVPF-GANNAFTMPLHMTFWGKEEN 107 (122)
T ss_dssp EEEECCT-TTTTTCCCCCEEEEEECHHH
T ss_pred EEEEEec-CCCCCCceeEEEEEEeChhH
Confidence 9999973 24578999999999997654
No 2
>3k2y_A Uncharacterized protein LP_0118; nucleic acid binding,zinc ION binding, structural genomics, PSI-2, protein structure initiative; 2.40A {Lactobacillus plantarum}
Probab=99.82 E-value=1.1e-20 Score=174.62 Aligned_cols=92 Identities=24% Similarity=0.429 Sum_probs=82.9
Q ss_pred cceEEEEEeeeeeccCc-----ccCCCCeEEEEeCCCCCCCCCceEEEecCCCccccccccccchhhhcccccccCCCce
Q 037957 154 EATLRTFIVGRRYSDEK-----EIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSEYLSPLMEKYSLSF 228 (841)
Q Consensus 154 ~~~~~~~IvG~~yy~~~-----~~~~ge~v~L~REP~N~~D~nAI~V~~~~g~~~~~lGyipr~~a~~la~l~D~g~~~~ 228 (841)
-+.++++|||+|||+|. .+++|+.|.|+|||+||||+|||+|.|.+| .+||||||+.|+.++++||+|. .+
T Consensus 6 ~~l~~f~IaG~ryy~g~~~~~~~L~~Ge~l~L~rEp~N~yD~nAI~V~~~~g---~kvGYvPr~~a~~la~lmd~g~-~l 81 (109)
T 3k2y_A 6 VALDTVTVVGERYVDDIVATLTTLRVGMAVLLQRESGNQYDDNAISVWTLQH---AKLGYIARYQNQPYATLMDQGQ-RL 81 (109)
T ss_dssp EEEEEEEEECGGGCTTHHHHTTSCCTTCEEEEEECTTCSSCTTCEEEECTTC---CEEEEECGGGHHHHHHHHHTTC-EE
T ss_pred EEEEEEEEEeEEeecchhhhhhcCCCCCEEEEEECCCCcCChhHEEEEeCCC---CEEEEecHHHHHHHHHHhhCCC-EE
Confidence 37899999999999984 479999999999999999999999999999 9999999999999999999998 69
Q ss_pred eEEEeecCCCCCceeEEEEEEEec
Q 037957 229 EGFVISAPKHSLDVVQIKITYHKI 252 (841)
Q Consensus 229 ~g~v~~~~~~~~~~~pi~i~~~~~ 252 (841)
+|+|..+.+. ..|+.|+++..
T Consensus 82 ~a~V~~v~~~---~~~l~~~~~~~ 102 (109)
T 3k2y_A 82 YGIVTVLDQQ---KQHLELMLWRL 102 (109)
T ss_dssp EEEEEECCTT---TTCCEEEEEEE
T ss_pred EEEEEEECCC---CceeEeeeeeh
Confidence 9999987654 46777777764
No 3
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=81.07 E-value=11 Score=42.12 Aligned_cols=64 Identities=6% Similarity=0.005 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHhcC------CCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 562 KVVLLGISFLEREQRFNDAINLLRRLLSC------FTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 562 ril~~~~~~LER~k~~~~A~~ll~~Ll~~------~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
+.+...+.++..+++|++|..+|+..|.- ..++ .-|..+..|+..+.++|++++|..+.++++.
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL-NVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 55566668889999999999999887751 1222 2366688888888899999999988877653
No 4
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=79.76 E-value=5.5 Score=34.52 Aligned_cols=78 Identities=15% Similarity=0.037 Sum_probs=51.6
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-CcccccccHHHHHHHHHHh
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWVRAGSRVALQRRVLRL 645 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~~~~~r~aL~rRl~rL 645 (841)
.+..+.+.++|++|+..|+..+...+.......-+..++..+.++|++++|....++++. +|.... ......++..+
T Consensus 45 lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~a~~~l~~l 122 (129)
T 2xev_A 45 LGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA--ARVAQERLQSI 122 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH--HHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH--HHHHHHHHHHH
Confidence 345777899999999999988763222211122356677778899999999999998874 465422 22344455544
Q ss_pred C
Q 037957 646 G 646 (841)
Q Consensus 646 ~ 646 (841)
.
T Consensus 123 ~ 123 (129)
T 2xev_A 123 R 123 (129)
T ss_dssp C
T ss_pred H
Confidence 3
No 5
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=79.22 E-value=3.4 Score=35.36 Aligned_cols=56 Identities=11% Similarity=0.017 Sum_probs=42.7
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
+..+.+.++|++|+..|+..+...+-. ..-|..++..+..+|++++|....++++.
T Consensus 14 g~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 14 AQEHLKHDNASRALALFEELVETDPDY---VGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356777999999999999887622111 12366778778899999999999988874
No 6
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=78.54 E-value=12 Score=42.69 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHhcC---CCCC--CccchhHHHHHHhhhhcCCchHHHHHHHhhh
Q 037957 562 KVVLLGISFLEREQRFNDAINLLRRLLSC---FTCD--SRRGYWTLRLSIDLEHMGCPSESLSVAEGGL 625 (841)
Q Consensus 562 ril~~~~~~LER~k~~~~A~~ll~~Ll~~---~~~~--~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l 625 (841)
+.+...+.++..+++|++|..+|+..|.- .+.+ -.-+.-+..|+..+.++|++++|..+.++++
T Consensus 352 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 352 RLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55566667889999999999998877651 1211 1125557778887889999999998888775
No 7
>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=77.67 E-value=1.1 Score=40.38 Aligned_cols=39 Identities=10% Similarity=0.257 Sum_probs=34.0
Q ss_pred ccCCCCeEEEEeCCCCCCCCCceEEEecCCCccccccccccchhhhc
Q 037957 171 EIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSEYL 217 (841)
Q Consensus 171 ~~~~ge~v~L~REP~N~~D~nAI~V~~~~g~~~~~lGyipr~~a~~l 217 (841)
.+..||.|.+++-|+| +-+.+-|..| +.||||++.-..+
T Consensus 59 pfkkGE~LeVI~~~e~----~wwLcRNs~G----kyGyVP~~yl~~~ 97 (102)
T 1ri9_A 59 QVKPGESLEVIQTTDD----TKVLCRNEEG----KYGYVLRSYLADN 97 (102)
T ss_dssp CCCTTCBCEEEEESSS----SEEEEEETTT----EEEEEEGGGSCC-
T ss_pred CcCCCCEEEEEEeCCC----CEEEEECCCC----CCCceeHHHhccc
Confidence 5789999999999997 8889999998 9999999876644
No 8
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=76.67 E-value=19 Score=37.02 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=36.1
Q ss_pred hhCceeEecchHHHHHHHHHH-hhcccCCccchhHHHhhcCceeccccccccc------ccCCCChHHHHHHHH
Q 037957 434 RTGLCIRVASKAEHLIWRAER-LFFLNGEQDLSAFLLVDLGIVKYPTYNCIIA------EQIFSGLCDLLAYEE 500 (841)
Q Consensus 434 ~~g~cirl~~~~~~L~~Rl~l-LFF~n~~qdls~fvL~DLG~~~yp~y~~~~~------~~iF~sR~dl~~Y~~ 500 (841)
++++|..+.|...++.....- +-|....-+-..-+...+|+..+|++.+-.. ...+.+.+.+..+..
T Consensus 37 wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~G~~~~~~~g~~~~~~l~~~l~ 110 (287)
T 3qou_A 37 RSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAIRALLD 110 (287)
T ss_dssp TCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTCCSSSEEEEEETTEEEEEEESCCCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCCCCCCeEEEEECCEEEEEeeCCCCHHHHHHHHH
Confidence 357788777766666554321 1122222222344567889999998765322 223455555555443
No 9
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=76.43 E-value=4 Score=34.29 Aligned_cols=60 Identities=13% Similarity=0.162 Sum_probs=45.3
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
+..+-+.++|++|++.|+..+...+.. ...+..++..+.++|++++|+..+++++. +|..
T Consensus 11 g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 11 GNSLFKQGLYREAVHCYDQLITAQPQN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 357778999999999999887622111 23456677778899999999999999875 4654
No 10
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=75.40 E-value=4.1 Score=35.55 Aligned_cols=59 Identities=10% Similarity=0.001 Sum_probs=44.9
Q ss_pred HHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcC
Q 037957 566 LGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLD 627 (841)
Q Consensus 566 ~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~d 627 (841)
..+..+.+.++|++|+..|+..+...+-. ..-+..++..+..+|++++|+..+++++..
T Consensus 32 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 32 GLGSTFRTLGEYRKAEAVLANGVKQFPNH---QALRVFYAMVLYNLGRYEQGVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33467888999999999999887622211 234666787788999999999999988754
No 11
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=75.04 E-value=6.8 Score=36.04 Aligned_cols=63 Identities=8% Similarity=-0.220 Sum_probs=47.4
Q ss_pred HHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhh-cCcccc
Q 037957 566 LGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL-LDSWVR 631 (841)
Q Consensus 566 ~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l-~dP~~~ 631 (841)
..+..+-+.++|++|+..+...+...+.. ..-|.+++..+.++|++++|....++++ .+|...
T Consensus 68 nla~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 68 NMSQCYLNIGDLHEAEETSSEVLKREETN---EKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 33457778999999999999887622111 2236778888899999999999999887 567654
No 12
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=74.23 E-value=7.3 Score=34.97 Aligned_cols=61 Identities=16% Similarity=-0.008 Sum_probs=46.0
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhh-cCcccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL-LDSWVR 631 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l-~dP~~~ 631 (841)
+..+.+.+++++|++.|+..+.-.+.. ..-|.+++..+..+|++++|+...++++ .||...
T Consensus 54 ~~~~~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 54 AACLTKLMEFQRALDDCDTCIRLDSKF---IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hhHHHhhccHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence 357778999999999999877521111 2236777888899999999999999887 477763
No 13
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=73.75 E-value=4.1 Score=38.02 Aligned_cols=60 Identities=12% Similarity=-0.021 Sum_probs=45.4
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSW 629 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~ 629 (841)
.+..+.+.++|++|++.|+..+...+.. ..-|..++..+..+|++++|+...+++++ +|.
T Consensus 113 lg~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 113 LGLVYDSMGEHDKAIEAYEKTISIKPGF---IRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHhCCchhHHHHHHHHHHhcchh---hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 3467888999999999999887622111 22367778888899999999999998874 453
No 14
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=72.70 E-value=9.9 Score=35.06 Aligned_cols=56 Identities=11% Similarity=-0.136 Sum_probs=42.7
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
+..+.+.++|++|+..|+..+...+.. ...+..++..+.++|++++|....++++.
T Consensus 62 g~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 62 GACRQAMGQYDLAIHSYSYGAVMDIXE---PRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCC---chHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357788999999999999887522111 12356677778899999999999998875
No 15
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=72.32 E-value=9.3 Score=30.68 Aligned_cols=60 Identities=13% Similarity=0.052 Sum_probs=44.1
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
+..+.+.+++++|+.+|+..+... +.. ..-+..++..+..+|++++|+...++++. +|..
T Consensus 16 a~~~~~~~~~~~A~~~~~~a~~~~-~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 76 (91)
T 1na3_A 16 GNAYYKQGDYDEAIEYYQKALELD-PNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 76 (91)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHccCHHHHHHHHHHHHhcC-CCC--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 456777899999999999887522 111 22356677777889999999999998875 5654
No 16
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=71.65 E-value=6.6 Score=37.01 Aligned_cols=57 Identities=9% Similarity=-0.023 Sum_probs=42.1
Q ss_pred HHHhhhhchHHHHHHHHHHhc-CCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccc
Q 037957 569 SFLEREQRFNDAINLLRRLLS-CFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSW 629 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~-~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~ 629 (841)
..+.+.++|++|+..|+..+. .+..+ .-|..++..+.++|++++|....++++. +|.
T Consensus 78 ~~~~~~g~~~~Ai~~~~~al~l~P~~~----~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 78 AIYQIKEQFQQAADLYAVAFALGKNDY----TPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSSCC----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHccHHHHHHHHHHHHhhCCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 577888999999999988775 22211 1256777778899999999998888875 444
No 17
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=71.17 E-value=9.3 Score=31.51 Aligned_cols=59 Identities=12% Similarity=0.049 Sum_probs=43.0
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhc-CCchHHHHHHHhhhcC
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHM-GCPSESLSVAEGGLLD 627 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl-~~~~eAl~l~e~~l~d 627 (841)
+..+.+.+++++|+..|+..+..... ......+..++..+.++ |++++|.+..++++..
T Consensus 47 a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 47 GKALYNLERYEEAVDCYNYVINVIED-EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSCC-TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcc-cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 35677789999999999988763222 00123456677777899 9999999998888754
No 18
>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A
Probab=70.79 E-value=3.7 Score=36.73 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=32.5
Q ss_pred ccCCCCeEEEEeCCCCCCCCCceEEEecCCCccccccccccchhh
Q 037957 171 EIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSE 215 (841)
Q Consensus 171 ~~~~ge~v~L~REP~N~~D~nAI~V~~~~g~~~~~lGyipr~~a~ 215 (841)
.+..||.|.+++-|+||-+ -+.+-|+.| +.||||.....
T Consensus 45 p~~~GE~LeII~~~e~p~g--~Wl~RN~~G----~~GyVp~~~v~ 83 (96)
T 2gtj_A 45 SFKQGEQIEIIRITDNPEG--KWLGRTARG----SYGYIKTTAVE 83 (96)
T ss_dssp EECTTCCEEEEECTTCSSS--CCEEECTTC----CBCCCCGGGEE
T ss_pred CcCCCCEEEEEEccCCCCC--eEEEECCCC----CCCccchhhEE
Confidence 5889999999999998744 456668888 99999998754
No 19
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=69.94 E-value=0.96 Score=30.51 Aligned_cols=13 Identities=31% Similarity=0.345 Sum_probs=10.5
Q ss_pred HHHHHhhhhhHHh
Q 037957 32 VTLLNELLLDACL 44 (841)
Q Consensus 32 ~~~~~~~~~~~~~ 44 (841)
..--+|.|||-||
T Consensus 17 paahin~hldrcl 29 (29)
T 3vhs_A 17 PAAHINSHLDRCL 29 (29)
T ss_dssp EGGGHHHHHHHHC
T ss_pred cHHHHHHHHhccC
Confidence 4556899999997
No 20
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=69.36 E-value=11 Score=32.22 Aligned_cols=62 Identities=16% Similarity=-0.020 Sum_probs=45.1
Q ss_pred HHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 566 LGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 566 ~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
..+..+.+.+++++|+..++..+...... ..-+..++..+.++|++++|....++++. +|..
T Consensus 55 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 55 NRAACYTKLLEFQLALKDCEECIQLEPTF---IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHHHHHTTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 33467788999999999999877622211 22356677777899999999999988874 5544
No 21
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=69.18 E-value=16 Score=40.74 Aligned_cols=70 Identities=13% Similarity=0.046 Sum_probs=51.0
Q ss_pred CchHHH-HHHHHHHHHHHhhhhchHHHHHHHHHHhcC------CCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhh
Q 037957 555 SASWVY-SKVVLLGISFLEREQRFNDAINLLRRLLSC------FTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL 625 (841)
Q Consensus 555 ~~~~v~-~ril~~~~~~LER~k~~~~A~~ll~~Ll~~------~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l 625 (841)
.+.+.+ .+.+...+.++..+++|++|+.+++..|.- ..++ ..|.-+..|+..+.++|++++|..+.++++
T Consensus 322 g~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp-~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 322 PDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP-VRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 344444 356666677888899999999999887751 2222 236677888888889999999998887765
No 22
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=68.65 E-value=11 Score=35.48 Aligned_cols=63 Identities=10% Similarity=-0.066 Sum_probs=46.4
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhh-cCcccc
Q 037957 565 LLGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL-LDSWVR 631 (841)
Q Consensus 565 ~~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l-~dP~~~ 631 (841)
.+| ..+-+.++|++|+..|+..+...+ . ... .|.-++..+..+|++++|+...++++ .+|...
T Consensus 41 ~lg-~~~~~~g~~~eA~~~~~~al~~~P-~-~~~-~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 41 SYA-YDFYNKGRIEEAEVFFRFLCIYDF-Y-NVD-YIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp HHH-HHHHHTTCHHHHHHHHHHHHHHCT-T-CHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHH-HHHHHcCCHHHHHHHHHHHHHhCC-C-CHH-HHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 344 467789999999999999876221 1 112 35566777889999999999999887 567653
No 23
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=68.62 E-value=6.6 Score=33.82 Aligned_cols=60 Identities=18% Similarity=0.056 Sum_probs=44.7
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSW 629 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~ 629 (841)
.+..+.+.+++++|+..|+..+...+.. ...|..++..+..+|++++|....++++. +|.
T Consensus 25 lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 25 LGKTYAEHEQFDAALPHLRAALDFDPTY---SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 3457778999999999999887622111 22356677778899999999999998875 444
No 24
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=67.98 E-value=8.2 Score=31.92 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=34.5
Q ss_pred cHHHHHhhcCHHHHHHHHHhhhccCCCCchHHHHHHHHhhccCC
Q 037957 379 AIKDICNLLTVSELREISCVLQNCHRGSRKQKVIASLLCFYEDG 422 (841)
Q Consensus 379 ~~~ell~lLtk~EL~~l~~~~~~~~~~~~K~~Li~~L~~~~~~~ 422 (841)
++...+.-+.+.||..|+..+..+ ++.+|.||+...+.....+
T Consensus 6 el~~Mv~sfRVsELq~LLg~~gr~-KsGrK~eL~~RaL~LL~~~ 48 (65)
T 1v66_A 6 ELKQMVMSLRVSELQVLLGYAGRN-KHGRKHELLTKALHLLKAG 48 (65)
T ss_dssp HHHHHHTTCCHHHHHHHHHTTCCC-CCSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhHHHHHHHHHHcCCC-CcCcHHHHHHHHHHHHHcC
Confidence 466778899999999999887644 6779999999887765544
No 25
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=67.83 E-value=18 Score=29.94 Aligned_cols=59 Identities=15% Similarity=0.034 Sum_probs=44.3
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcC-cc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLD-SW 629 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~d-P~ 629 (841)
+..+.+.+++++|+..++..+..... ....+..++..+.++|++++|....++++.- |.
T Consensus 45 a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 45 SAAYAKKGDYQKAYEDGCKTVDLKPD---WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHhhccHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 35677789999999999988762221 1334667777788999999999999988754 54
No 26
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=67.76 E-value=14 Score=32.14 Aligned_cols=66 Identities=17% Similarity=0.070 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhhchHHHHHHHHHHhcCCC----CCCccchhHHHHHHhhhhcCCchHHHHHHHhhh-cCccc
Q 037957 564 VLLGISFLEREQRFNDAINLLRRLLSCFT----CDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL-LDSWV 630 (841)
Q Consensus 564 l~~~~~~LER~k~~~~A~~ll~~Ll~~~~----~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l-~dP~~ 630 (841)
+..| ..+-+.++|+.|+.||+.-+.... ....+..-+..|+..+.++|+.+.|+...++++ .+|..
T Consensus 9 ~~lG-~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~ 79 (104)
T 2v5f_A 9 FELG-KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEH 79 (104)
T ss_dssp HHHH-HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHH-HHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC
Confidence 3444 566778999999999987665211 112234446677777889999999999999998 67765
No 27
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=67.73 E-value=9.5 Score=34.39 Aligned_cols=56 Identities=5% Similarity=-0.161 Sum_probs=42.1
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
+..+.+.++|++|+..|+..+...+.. - ..+..++..+.++|++++|....++++.
T Consensus 59 g~~~~~~g~~~~A~~~~~~al~~~p~~-~--~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 59 GACRQSLGLYEQALQSYSYGALMDINE-P--RFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC-T--HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCC-c--HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357788999999999999887622111 1 1356677778899999999999988873
No 28
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=66.87 E-value=5.5 Score=33.15 Aligned_cols=61 Identities=11% Similarity=0.058 Sum_probs=43.8
Q ss_pred HHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhh-cCcccc
Q 037957 569 SFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL-LDSWVR 631 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l-~dP~~~ 631 (841)
..+-+.++|++|+..|+..+... +.... .-+..++..+..+|++++|+...++++ .+|...
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~-~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKD-EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHH-HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 46667899999999999887622 11111 025566777788999999999999887 456553
No 29
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=66.79 E-value=8.6 Score=34.41 Aligned_cols=59 Identities=10% Similarity=0.035 Sum_probs=43.9
Q ss_pred HHHhhhhchHHHHHHHHHHhcC--CCC--CCccchhHHHHHHhhhhcCCchHHHHHHHhhhcC
Q 037957 569 SFLEREQRFNDAINLLRRLLSC--FTC--DSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLD 627 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~~--~~~--~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~d 627 (841)
..+-+.++|++|++.++..+.- ... ...+|.-+.+++..+..+|++++|+...++++..
T Consensus 50 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 50 AVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 5777799999999999877651 111 1223445677777788999999999999998864
No 30
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=66.49 E-value=7.5 Score=33.06 Aligned_cols=61 Identities=7% Similarity=-0.011 Sum_probs=43.6
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCC--CCc--cchhHHHHHHhhhhcCCchHHHHHHHhhhcC
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTC--DSR--RGYWTLRLSIDLEHMGCPSESLSVAEGGLLD 627 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~--~~r--RG~W~~RLal~Lehl~~~~eAl~l~e~~l~d 627 (841)
.+..+.+.+++++|+..|+..+..... ... ...-+..++..+.++|++++|....++++.-
T Consensus 44 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 44 QAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 345677889999999999987752111 110 0334566777778999999999999988764
No 31
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=65.24 E-value=8.2 Score=35.56 Aligned_cols=61 Identities=10% Similarity=-0.129 Sum_probs=45.5
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWVR 631 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~~ 631 (841)
+..+.+.++|++|+..|+..+...... ..-|..++..+.++|++++|+...++++. +|...
T Consensus 52 ~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 52 AAAYSASGQHEKAAEDAELATVVDPKY---SKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 457778999999999999887622111 22366778778899999999999998874 46543
No 32
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=65.03 E-value=11 Score=32.82 Aligned_cols=56 Identities=11% Similarity=-0.049 Sum_probs=42.3
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
+..+.+.++|++|+..|+..+...+.. ..-+..++..+..+|++++|....++++.
T Consensus 45 a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 45 AAALAKLMSFPEAIADCNKAIEKDPNF---VRAYIRKATAQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 356778999999999999887622111 22366777778899999999999888864
No 33
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=64.92 E-value=14 Score=33.29 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=44.0
Q ss_pred HHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhh-cCccc
Q 037957 569 SFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL-LDSWV 630 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l-~dP~~ 630 (841)
..+-+.++|++|+..|+..+...+.. ...|..++..+..+|++++|+...++++ .+|..
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 85 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLDHYD---ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE 85 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHccHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 56777899999999999887622211 1235566777889999999999999887 45654
No 34
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=63.88 E-value=11 Score=32.22 Aligned_cols=59 Identities=7% Similarity=-0.117 Sum_probs=44.0
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSW 629 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~ 629 (841)
+..+.+.++|++|+..|+..+...... ..-+..++..+..+|++++|+..+++++. +|.
T Consensus 23 ~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 82 (133)
T 2lni_A 23 GNECFQKGDYPQAMKHYTEAIKRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82 (133)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHTTCTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 357778999999999999887632211 22356667777889999999999998875 454
No 35
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=63.84 E-value=16 Score=30.48 Aligned_cols=61 Identities=13% Similarity=0.045 Sum_probs=44.1
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
.+..+.+.+++++|+.+++..+.... .. ..-+..++..+.++|++++|....++++. +|..
T Consensus 49 la~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 49 LGNAYYKQGDYDEAIEYYQKALELDP-NN--AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC-cc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 34677789999999999998775221 11 22355667777889999999999988864 4543
No 36
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.93 E-value=12 Score=32.83 Aligned_cols=62 Identities=8% Similarity=-0.076 Sum_probs=38.9
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSW 629 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~ 629 (841)
+..+.+.++|++|+..|+..+....-......-+..++..+.++|++++|+..+++++. +|.
T Consensus 35 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 97 (148)
T 2dba_A 35 GNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG 97 (148)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc
Confidence 35666788888888888877652211100122245556666778888888888887764 343
No 37
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=62.59 E-value=7.8 Score=34.70 Aligned_cols=59 Identities=7% Similarity=-0.079 Sum_probs=43.6
Q ss_pred HHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 569 SFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
..+-+.|+|++|++.|+.-+.- .|.. ..-|..++..+.++|++++|+..+++++. +|..
T Consensus 16 ~~~~~~~~~~~A~~~y~~Al~~-~p~~--~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~ 75 (127)
T 4gcn_A 16 NAAYKQKDFEKAHVHYDKAIEL-DPSN--ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET 75 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCC--HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence 4666789999999999987752 1211 22355667778899999999999999874 5554
No 38
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=62.40 E-value=7.4 Score=34.92 Aligned_cols=62 Identities=10% Similarity=-0.032 Sum_probs=45.0
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 565 LLGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 565 ~~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
.+| ..+-+.|+|++|++.|+..+...+.. ..-|..++..+.++|++++|+..+++++. ||..
T Consensus 18 ~~G-~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 80 (126)
T 4gco_A 18 NKG-NEYFKKGDYPTAMRHYNEAVKRDPEN---AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF 80 (126)
T ss_dssp HHH-HHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHH-HHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence 455 45666899999999999877522111 12355567778899999999999999875 6665
No 39
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=62.38 E-value=12 Score=32.65 Aligned_cols=59 Identities=8% Similarity=0.024 Sum_probs=44.1
Q ss_pred HHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 569 SFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
..+-+.++|++|+..|+..+...+.. ..-|..++..+.++|++++|+..+++++. +|..
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (126)
T 3upv_A 12 KEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 56677999999999999887622111 22356667777899999999999998874 6654
No 40
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=62.07 E-value=16 Score=33.43 Aligned_cols=60 Identities=15% Similarity=0.095 Sum_probs=44.6
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhh-cCccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL-LDSWV 630 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l-~dP~~ 630 (841)
+..+-+.++|++|+..|+..+...... ..-|..++..+.++|++++|+..+++++ .+|..
T Consensus 18 g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 78 (164)
T 3sz7_A 18 GNAAMARKEYSKAIDLYTQALSIAPAN---PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY 78 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 356778999999999999887622111 2235667777889999999999999887 45654
No 41
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=61.81 E-value=7.8 Score=32.00 Aligned_cols=58 Identities=9% Similarity=0.037 Sum_probs=42.4
Q ss_pred HHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcC-cc
Q 037957 569 SFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLD-SW 629 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~d-P~ 629 (841)
..+.+.+++++|+..|+..+.... .. ..-+..++..+.++|++++|+...++++.- |.
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~-~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAIQLDP-EE--SKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHCC-CC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCc-CC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 466778999999999998875221 11 222456666678899999999999998754 44
No 42
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=61.40 E-value=22 Score=29.93 Aligned_cols=61 Identities=11% Similarity=0.018 Sum_probs=44.6
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
.+..+.+.+++++|+..++..+... +.. ...+..++..+.++|++++|....++++. +|..
T Consensus 52 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 52 RAAAYSKLGNYAGAVQDCERAICID-PAY--SKAYGRMGLALSSLNKHVEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHhhchHHHHHHHHHHHhcC-ccC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccc
Confidence 3456777899999999999887522 111 23466777777899999999999988864 5543
No 43
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=60.98 E-value=15 Score=31.63 Aligned_cols=62 Identities=8% Similarity=-0.110 Sum_probs=43.0
Q ss_pred HHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 569 SFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
..+-+.++|++|+..|+..+...+.......-+..++..+..+|++++|....++++. +|..
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC
Confidence 4666789999999999988763222211111244566667889999999999998875 4554
No 44
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=60.55 E-value=9.2 Score=30.23 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=28.3
Q ss_pred HhhcCHHHHHHHHHhhhccCCCCchHHHHHHHHhhcc
Q 037957 384 CNLLTVSELREISCVLQNCHRGSRKQKVIASLLCFYE 420 (841)
Q Consensus 384 l~lLtk~EL~~l~~~~~~~~~~~~K~~Li~~L~~~~~ 420 (841)
++-+|+.||++.++...... +.+|++||+.|.....
T Consensus 5 ~~kltV~eLK~~Lk~RGL~~-~G~KadLieRL~~~~~ 40 (51)
T 1h1j_S 5 YSSLTVVQLKDLLTKRNLSV-GGLKNELVQRLIKDDE 40 (51)
T ss_dssp GGGCCHHHHHHHHHHTTCCC-CSSHHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHcCCCC-CCcHHHHHHHHHHHHH
Confidence 45689999999999877553 4579999999986543
No 45
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=60.32 E-value=13 Score=31.06 Aligned_cols=57 Identities=12% Similarity=0.033 Sum_probs=42.0
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
.+..+.+.+++++|+.+|+..+... +.. ..-+..++..+.+.|++++|+...++++.
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 71 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKALELD-PNN--AEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-cCc--HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3456778999999999999887522 111 12355667667889999999999988875
No 46
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=60.21 E-value=18 Score=33.19 Aligned_cols=60 Identities=17% Similarity=0.069 Sum_probs=44.3
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
+..+-+.++|++|+..|+..+...+.. ...|..++..+..+|++++|+...++++. +|..
T Consensus 28 g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 88 (148)
T 2vgx_A 28 AFNQYQSGXYEDAHXVFQALCVLDHYD---SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE 88 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHHcCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence 357778999999999999887522111 12345667778899999999999998874 5654
No 47
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.03 E-value=13 Score=32.55 Aligned_cols=62 Identities=10% Similarity=-0.042 Sum_probs=45.6
Q ss_pred HHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 566 LGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 566 ~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
..+..+.+.++|++|+..++..+... +.. ...+..++..+.++|++++|....++++. +|..
T Consensus 70 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (148)
T 2dba_A 70 NRAACHLKLEDYDKAETEASKAIEKD-GGD--VKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKN 132 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT-SCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHccHHHHHHHHHHHHhhC-ccC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 33456778999999999999876522 211 33466777778899999999999998874 4554
No 48
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=59.72 E-value=14 Score=32.29 Aligned_cols=59 Identities=14% Similarity=-0.073 Sum_probs=43.5
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSW 629 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~ 629 (841)
+..+.+.++|++|+..|+..+... +. ...-+..++..+..+|++++|+...++++. +|.
T Consensus 50 ~~~~~~~~~~~~A~~~~~~al~~~-p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 50 ALCYLKMQQPEQALADCRRALELD-GQ--SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-ch--hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 457778999999999999887522 11 122366777778899999999998888764 344
No 49
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=59.62 E-value=9.8 Score=35.01 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=32.4
Q ss_pred cHHHHHhhcCHHHHHHHHHhhhccCCCCchHHHHHHHHhhcc
Q 037957 379 AIKDICNLLTVSELREISCVLQNCHRGSRKQKVIASLLCFYE 420 (841)
Q Consensus 379 ~~~ell~lLtk~EL~~l~~~~~~~~~~~~K~~Li~~L~~~~~ 420 (841)
++...+.-||++|||++++...... +.+|++|++.|...+.
T Consensus 32 ~~~~~l~kLtVaELK~~cr~~GL~~-sGkKaeLi~RI~~yl~ 72 (114)
T 2rnn_A 32 ETITLMELLKVSELKDICRSVSFPV-SGRKAVLQDLIRNFLQ 72 (114)
T ss_dssp HHHHHHTTCCHHHHHHHHHHTTCCT-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHcCCCc-CCcHHHHHHHHHHHHH
Confidence 4555578899999999999977553 4589999999986543
No 50
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=59.04 E-value=8.8 Score=37.63 Aligned_cols=65 Identities=9% Similarity=0.000 Sum_probs=45.7
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcCccccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLDSWVRA 632 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~dP~~~~ 632 (841)
+..+.+.++|+.|+..|+..+...+-......=+.+++..+.++|+.++|.+..+.+...+..+.
T Consensus 154 a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 154 AEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 46788899999999999998863322111111255667777899999999998888776654433
No 51
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=58.76 E-value=9.6 Score=33.83 Aligned_cols=62 Identities=8% Similarity=-0.095 Sum_probs=44.8
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhh-cCccc
Q 037957 565 LLGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL-LDSWV 630 (841)
Q Consensus 565 ~~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l-~dP~~ 630 (841)
.+| ..+-+.+++++|+..|+..+...+ .. ...|..++..+..+|++++|+...++++ .+|..
T Consensus 22 ~~g-~~~~~~g~~~~A~~~~~~al~~~P-~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 84 (121)
T 1hxi_A 22 EEG-LSMLKLANLAEAALAFEAVCQKEP-ER--EEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 84 (121)
T ss_dssp HHH-HHHHHTTCHHHHHHHHHHHHHHST-TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHH-HHHHHcCCHHHHHHHHHHHHHHCC-CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 344 456678999999999998876222 11 1235567777888999999999999887 46765
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=58.65 E-value=23 Score=32.72 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=42.9
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcC
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLD 627 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~d 627 (841)
+..+.+.|+|++|++.|+..+...+-. ..-+..++..+.++|++++|+...+.++..
T Consensus 12 G~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~~~~~~a~~~~~~~~~~ 68 (184)
T 3vtx_A 12 GDKKRTKGDFDGAIRAYKKVLKADPNN---VETLLKLGKTYMDIGLPNDAIESLKKFVVL 68 (184)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 357778999999999999887622111 223667777788999999999998888644
No 53
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=58.36 E-value=13 Score=36.03 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=44.1
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHhcC-----CCCCCccchhH----HHHHHhhhhcCCchHHHHHHHhhh
Q 037957 565 LLGISFLEREQRFNDAINLLRRLLSC-----FTCDSRRGYWT----LRLSIDLEHMGCPSESLSVAEGGL 625 (841)
Q Consensus 565 ~~~~~~LER~k~~~~A~~ll~~Ll~~-----~~~~~rRG~W~----~RLal~Lehl~~~~eAl~l~e~~l 625 (841)
++| ..+.++++|++|+..|..-|.- .-.+.. ++.| .|++..|..+|++++|+...++++
T Consensus 62 n~g-~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~-~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 62 GLA-EALAGLRSFDEALHSADKALHYFNRRGELNQDE-GKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHH-HHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHH-HHHHHCCCHHHHHHHHHHHHHhhhccccCCCch-HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 344 5788899999999999887752 002222 3445 777878999999999999888886
No 54
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=58.30 E-value=10 Score=30.38 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=28.2
Q ss_pred HhhcCHHHHHHHHHhhhccCCCCchHHHHHHHHhhc
Q 037957 384 CNLLTVSELREISCVLQNCHRGSRKQKVIASLLCFY 419 (841)
Q Consensus 384 l~lLtk~EL~~l~~~~~~~~~~~~K~~Li~~L~~~~ 419 (841)
+.-||+.||++.++...... +.+|++||+.|....
T Consensus 10 l~klkV~eLK~~L~~rGL~~-~G~KaeLieRL~~~l 44 (55)
T 2do1_A 10 LHKLKLAELKQECLARGLET-KGIKQDLIHRLQAYL 44 (55)
T ss_dssp TTTSCHHHHHHHHHHHTCCC-CSCHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHcCCCC-CCcHHHHHHHHHHHH
Confidence 56789999999999877654 347999999997653
No 55
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=57.68 E-value=26 Score=28.88 Aligned_cols=59 Identities=7% Similarity=-0.135 Sum_probs=43.1
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSW 629 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~ 629 (841)
+..+.+.+++++|+..|+..+...+.. ...+..++..+.++|++++|...+++++. +|.
T Consensus 11 ~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 70 (118)
T 1elw_A 11 GNKALSVGNIDDALQCYSEAIKLDPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD 70 (118)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence 356677899999999999887522111 22456667667789999999999998874 454
No 56
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=57.51 E-value=14 Score=33.05 Aligned_cols=61 Identities=11% Similarity=-0.124 Sum_probs=45.2
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
.+..+.+.++|++|+..|+..+... +.. ..-+..++..+.++|++++|....++++. +|..
T Consensus 53 ~a~~~~~~~~~~~A~~~~~~a~~~~-~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 53 RSLAYLRTECYGYALGDATRAIELD-KKY--IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 114 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccc--HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 3457778999999999999887622 111 23466777778899999999999998875 4544
No 57
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=56.98 E-value=16 Score=30.97 Aligned_cols=57 Identities=7% Similarity=-0.042 Sum_probs=42.3
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcC
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLD 627 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~d 627 (841)
+..+.+.++++.|+..|+..+...... ...+..++..+.++|++++|+..+++++.-
T Consensus 11 ~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 11 GNDAYKKKDFDTALKHYDKAKELDPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEV 67 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 356677899999999999887622111 234566777778899999999999888653
No 58
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=56.12 E-value=28 Score=30.19 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=44.5
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
+..+-+.++|++|+..|+..+...+.. ..-+..++..+..+|++++|+..+++++. +|..
T Consensus 16 g~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 76 (137)
T 3q49_B 16 GNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDGQS 76 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhCcHHHHHHHHHHHHhhCcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh
Confidence 356677899999999999887622111 22456667777899999999999998875 5654
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=55.46 E-value=24 Score=34.47 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=39.9
Q ss_pred HHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcCcc
Q 037957 569 SFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLDSW 629 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~dP~ 629 (841)
..+-+.++|++|+..|+..+...+.. ..-+..++..+.++|++++|+..+++++..|.
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 68 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLEAKKYNS---PYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHTTCCC---STTHHHHHHHHHHTTCHHHHHHHHHHHHTTSC
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhccC
Confidence 56667788888888888877532211 11255566666788888888888888887663
No 60
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=55.27 E-value=20 Score=32.81 Aligned_cols=60 Identities=7% Similarity=-0.022 Sum_probs=42.0
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
+.++.+.++|++|++.|+..+...+.. ..-|..++..+..+|++++|+...++++. +|..
T Consensus 38 a~~y~~~~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 98 (150)
T 4ga2_A 38 AKLYYEAKEYDLAKKYICTYINVQERD---PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ 98 (150)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC
Confidence 356677889999999988877521111 12356677777888999999888888774 6654
No 61
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=55.21 E-value=10 Score=33.68 Aligned_cols=59 Identities=12% Similarity=-0.083 Sum_probs=42.0
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSW 629 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~ 629 (841)
+.++.+.+++++|+..|+..+...+ .. ...+..++..+.++|++++|+...++++. +|.
T Consensus 58 g~~~~~~g~~~~A~~~~~~al~l~P-~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 58 GLTQAENEKDGLAIIALNHARMLDP-KD--IAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3567789999999999998876221 11 12356677778889999999999998875 454
No 62
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=54.59 E-value=19 Score=30.28 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=37.7
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
+..+.+.+++++|+.+++..+...... ...+..++..+.+.|++++|....++++.
T Consensus 76 ~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 76 GNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 456777888999988888776522111 22345566666778888888888777653
No 63
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=54.16 E-value=25 Score=35.57 Aligned_cols=67 Identities=9% Similarity=-0.103 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 561 SKVVLLGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 561 ~ril~~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
.......+..+.+.+++++|+..|+..+... +. . ...+..++..+.++|++++|....++++. +|..
T Consensus 272 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~-~-~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 272 VRSKERICHCFSKDEKPVEAIRICSEVLQME-PD-N-VNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEND 339 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cc-c-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 3444444578888999999999999887621 11 1 23466677778899999999999999885 5654
No 64
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=53.06 E-value=16 Score=28.73 Aligned_cols=35 Identities=23% Similarity=0.062 Sum_probs=27.9
Q ss_pred HhhcCHHHHHHHHHhhhccCCCCchHHHHHHHHhhc
Q 037957 384 CNLLTVSELREISCVLQNCHRGSRKQKVIASLLCFY 419 (841)
Q Consensus 384 l~lLtk~EL~~l~~~~~~~~~~~~K~~Li~~L~~~~ 419 (841)
+.-|++.||++.++...... +.+|++||+.|....
T Consensus 10 ~~klkV~eLK~eLk~RgL~~-~G~Ka~Li~RL~~~~ 44 (50)
T 1zrj_A 10 VRRLKVNELREELQRRGLDT-RGLKAELAERLQAAL 44 (50)
T ss_dssp GGGSCHHHHHHHHHHTTCCC-CSCHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHcCCCC-CCcHHHHHHHHHHHH
Confidence 45689999999998876553 457999999998654
No 65
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=52.85 E-value=49 Score=33.66 Aligned_cols=70 Identities=9% Similarity=0.074 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHhcCCCCCCc-c-c--hhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccccc
Q 037957 562 KVVLLGISFLEREQRFNDAINLLRRLLSCFTCDSR-R-G--YWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWVR 631 (841)
Q Consensus 562 ril~~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~r-R-G--~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~~ 631 (841)
.+....+.++.+.++|++|+..|+..+........ + + .-+..+++.+..+|++++|...+++++. +|...
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~ 233 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFA 233 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence 34445567888999999999999988763221111 0 1 0245666667889999999999999986 67643
No 66
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=52.67 E-value=33 Score=31.86 Aligned_cols=58 Identities=17% Similarity=0.067 Sum_probs=40.2
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
+..+.+.|++++|+..|+..+...+.... ..-+..++..+..+|+.++|.....+++.
T Consensus 115 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 115 AVQYNQVGRDEEALELLWNILKVNLGAQD-GEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTTTTT-THHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCcccCh-HHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 46788899999999999988763322111 12245566667888999998887776653
No 67
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=52.57 E-value=84 Score=34.22 Aligned_cols=56 Identities=13% Similarity=-0.103 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHH
Q 037957 563 VVLLGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVA 621 (841)
Q Consensus 563 il~~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~ 621 (841)
.+...+..+.+.+++++|+..++.++...+.. .+ +|..|...|.+.|+..+|++.-
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~-E~--~~~~lm~al~~~Gr~~~Al~~y 228 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYR-EP--LWTQLITAYYLSDRQSDALGAY 228 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-HH--HHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HH--HHHHHHHHHHHcCCHHHHHHHH
Confidence 33445667778999999999999887633333 22 4666656678999999987653
No 68
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=52.48 E-value=19 Score=34.87 Aligned_cols=62 Identities=11% Similarity=-0.034 Sum_probs=46.7
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccccc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWVR 631 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~~ 631 (841)
.+..+.+.+++++|+..|+..+...+.. ..-+..++..+..+|++++|+...++++. +|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 122 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNN---VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence 4568888999999999999887622111 12356677778889999999999999874 67653
No 69
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=52.18 E-value=28 Score=34.42 Aligned_cols=64 Identities=8% Similarity=-0.091 Sum_probs=45.5
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccc
Q 037957 565 LLGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSW 629 (841)
Q Consensus 565 ~~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~ 629 (841)
.+| ..+-+.++|++|+..|+.++...+-......-+..++..+..+|++++|+...++++. +|.
T Consensus 20 ~~a-~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 20 ERA-MEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI 84 (261)
T ss_dssp HHH-HHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHH-HHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC
Confidence 444 4566689999999999999873322211122355667777899999999999999886 354
No 70
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=52.18 E-value=85 Score=31.86 Aligned_cols=65 Identities=11% Similarity=-0.010 Sum_probs=44.4
Q ss_pred HHHHHHHHHhhh-hchHHHHHHHHHHhcCCCCCCc-c--chhHHHHHHhhhhcCCchHHHHHHHhhhcC
Q 037957 563 VVLLGISFLERE-QRFNDAINLLRRLLSCFTCDSR-R--GYWTLRLSIDLEHMGCPSESLSVAEGGLLD 627 (841)
Q Consensus 563 il~~~~~~LER~-k~~~~A~~ll~~Ll~~~~~~~r-R--G~W~~RLal~Lehl~~~~eAl~l~e~~l~d 627 (841)
.....+.++++. +++++|+..|+.-+.-....+. . ..-+..++..+..+|++++|+...++++.-
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344455788885 9999999999887651111111 1 123456666677899999999999988764
No 71
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=51.98 E-value=36 Score=32.15 Aligned_cols=63 Identities=16% Similarity=0.065 Sum_probs=44.1
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCC-C-Cccc-----------hhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTC-D-SRRG-----------YWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~-~-~rRG-----------~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
+..+-+.++|++|+..|+..+..... + ...+ .-+..++..+..+|++++|+..+++++. +|..
T Consensus 45 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 121 (198)
T 2fbn_A 45 GNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 121 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc
Confidence 35677789999999999988752111 1 1111 2355667777889999999999998875 5543
No 72
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=50.36 E-value=16 Score=31.24 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=28.4
Q ss_pred HhhcCHHHHHHHHHhhhccCCCCchHHHHHHHHhhc
Q 037957 384 CNLLTVSELREISCVLQNCHRGSRKQKVIASLLCFY 419 (841)
Q Consensus 384 l~lLtk~EL~~l~~~~~~~~~~~~K~~Li~~L~~~~ 419 (841)
++-||+.||++.++...... +.+|++||+.|....
T Consensus 26 l~klkVaeLK~eLk~RGL~~-sG~KaeLIeRL~~~~ 60 (75)
T 2kvu_A 26 LDDMKVAELKQELKLRSLPV-SGTKTELIERLRAYQ 60 (75)
T ss_dssp TTTSCHHHHHHHHHHTTCCC-CSCHHHHHHHHHHHH
T ss_pred HHHCcHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHH
Confidence 56789999999999876553 457999999998654
No 73
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=50.04 E-value=40 Score=28.19 Aligned_cols=59 Identities=8% Similarity=0.114 Sum_probs=42.9
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSW 629 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~ 629 (841)
+..+.+.++++.|+..|+..+...... ...+..++..+.++|++++|+..+++++. +|.
T Consensus 19 ~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 78 (131)
T 2vyi_A 19 GNEQMKVENFEAAVHFYGKAIELNPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA 78 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc
Confidence 356667899999999999887522111 22355666667889999999999998874 454
No 74
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=49.27 E-value=36 Score=36.74 Aligned_cols=63 Identities=8% Similarity=-0.100 Sum_probs=47.6
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhh-cCccc
Q 037957 565 LLGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL-LDSWV 630 (841)
Q Consensus 565 ~~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l-~dP~~ 630 (841)
...+..+.+.++|++|++.|+..+..... ..+-+.+++..+.++|++++|+...++++ .+|..
T Consensus 277 ~nla~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~ 340 (370)
T 1ihg_A 277 LNIGACKLKMSDWQGAVDSCLEALEIDPS---NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 340 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Confidence 33446777899999999999998863221 13346778888899999999999999886 45654
No 75
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=48.16 E-value=26 Score=30.45 Aligned_cols=65 Identities=15% Similarity=0.079 Sum_probs=41.9
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHhcC---CCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 562 KVVLLGISFLEREQRFNDAINLLRRLLSC---FTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 562 ril~~~~~~LER~k~~~~A~~ll~~Ll~~---~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
.+....+..+...+++++|++.++..+.. ...+...+..+..++..+..+|++++|...+++++.
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33344456777889999999998876641 111111233355566666788999999988877653
No 76
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=48.11 E-value=1.8e+02 Score=29.59 Aligned_cols=70 Identities=11% Similarity=0.032 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHhcCCC-CCCc--cchhHHHHHHhhhhcCCchHHHHHHHhhhcCcccc
Q 037957 562 KVVLLGISFLEREQRFNDAINLLRRLLSCFT-CDSR--RGYWTLRLSIDLEHMGCPSESLSVAEGGLLDSWVR 631 (841)
Q Consensus 562 ril~~~~~~LER~k~~~~A~~ll~~Ll~~~~-~~~r--RG~W~~RLal~Lehl~~~~eAl~l~e~~l~dP~~~ 631 (841)
.++...+.++.+.++|++|+..|+..+.... ...+ .+.-+..++..+..+|++++|+...++++.+|...
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~ 228 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFS 228 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Confidence 4445556788889999999999988765110 0001 11123334444456799999999999998777653
No 77
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=48.11 E-value=25 Score=34.29 Aligned_cols=65 Identities=9% Similarity=-0.040 Sum_probs=44.8
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 565 LLGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 565 ~~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
.+| ..+-+.|+|++|+..|+.++...+.......-+..++..+.++|++++|+...++++. +|..
T Consensus 9 ~~a-~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~ 74 (225)
T 2yhc_A 9 ATA-QQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH 74 (225)
T ss_dssp HHH-HHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHH-HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence 344 4566689999999999998863221111111245566667889999999999999874 6765
No 78
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=47.72 E-value=31 Score=32.62 Aligned_cols=63 Identities=13% Similarity=0.051 Sum_probs=46.7
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhh-cCccc
Q 037957 565 LLGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL-LDSWV 630 (841)
Q Consensus 565 ~~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l-~dP~~ 630 (841)
...+..+.+.++|++|+..++..+...... ..-+.+++..+.++|++++|+...++++ .+|..
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 155 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKIDKNN---VKALYKLGVANMYFGFLEEAKENLYKAASLNPNN 155 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 334467778999999999999887622111 2336777877889999999999999887 45654
No 79
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=46.80 E-value=29 Score=35.47 Aligned_cols=59 Identities=15% Similarity=-0.060 Sum_probs=44.4
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSW 629 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~ 629 (841)
+..+.+.++|++|+..|+..+... +.. ..-+.+++..+.++|++++|+...++++. +|.
T Consensus 45 a~~~~~~~~~~~A~~~~~~al~~~-p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 45 ALCYLKMQQPEQALADCRRALELD-GQS--VKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTSC-TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 357778999999999999887632 221 23466778788899999999999888763 443
No 80
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=46.46 E-value=69 Score=30.78 Aligned_cols=59 Identities=19% Similarity=0.097 Sum_probs=39.8
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
.+..+.+.+++++|+++|+..+.....+. ....+..++..+...|++++|....++++.
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 169 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPE-RSRVFENLGLVSLQMKKPAQAKEYFEKSLR 169 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34567778899999999988765111111 123355566666788899999888888765
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=46.25 E-value=36 Score=30.47 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=37.9
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
+..+.+.+++++|+..++..+.... . . ...+..++..+..+|++++|....++++.
T Consensus 117 a~~~~~~~~~~~A~~~~~~~~~~~~-~-~-~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 117 GVALDNLGRFDEAIDSFKIALGLRP-N-E-GKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-T-C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHhcCc-c-c-hHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566778888888888887765221 1 1 23355566666788888888888777653
No 82
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=46.04 E-value=30 Score=28.91 Aligned_cols=56 Identities=14% Similarity=0.053 Sum_probs=40.4
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
+..+.+.+++++|+.+++..+... +.. ..-+..++..+...|++++|....++++.
T Consensus 42 a~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 97 (136)
T 2fo7_A 42 GNAYYKQGDYDEAIEYYQKALELD-PRS--AEAWYNLGNAYYKQGDYDEAIEYYQKALE 97 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTC--HHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHC-CCc--hHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456677899999999999876522 111 12345566667788999999999988864
No 83
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=45.65 E-value=33 Score=29.81 Aligned_cols=64 Identities=8% Similarity=-0.136 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHhcCC---CCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 563 VVLLGISFLEREQRFNDAINLLRRLLSCF---TCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 563 il~~~~~~LER~k~~~~A~~ll~~Ll~~~---~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
+....+..+-..+++++|+..++..+... ..+...+.-+..++..+..+|++++|...+++++.
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34444567778899999999998766411 11111122344556666788999999998888764
No 84
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=45.50 E-value=68 Score=29.77 Aligned_cols=61 Identities=15% Similarity=0.004 Sum_probs=40.7
Q ss_pred HHHHhhh-hchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccc
Q 037957 568 ISFLERE-QRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSW 629 (841)
Q Consensus 568 ~~~LER~-k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~ 629 (841)
+..+.+. +++++|+..++..+.....+. ...-+..++..+.+.|++++|+...++++. +|.
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 145 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPT-PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ 145 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSC-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4566778 899999999988776111111 123345566667788899999888888764 343
No 85
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=45.44 E-value=25 Score=32.23 Aligned_cols=62 Identities=15% Similarity=-0.019 Sum_probs=43.2
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHH-HHHhhh-cCcccc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLS-VAEGGL-LDSWVR 631 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~-l~e~~l-~dP~~~ 631 (841)
.+.++.+.+++++|+..|+..+... |.. ..-+..++..+..+|+.++|.. .+++++ .+|...
T Consensus 71 lg~~~~~~~~~~~A~~~~~~al~~~-p~~--~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~ 134 (150)
T 4ga2_A 71 LGLLYELEENTDKAVECYRRSVELN-PTQ--KDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSP 134 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTC--HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhC-CCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCH
Confidence 3467888999999999999887621 111 1236677777788899877655 467766 478763
No 86
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=44.93 E-value=27 Score=36.86 Aligned_cols=61 Identities=13% Similarity=-0.153 Sum_probs=46.6
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhh-cCccc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL-LDSWV 630 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l-~dP~~ 630 (841)
.+..+.+.++|++|+..|+..+...+.. ...+.+++..+..+|++++|+...++++ .+|..
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELDSNN---EKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 3467788999999999999887622111 2346778888889999999999999887 46665
No 87
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=43.58 E-value=43 Score=32.63 Aligned_cols=62 Identities=10% Similarity=-0.049 Sum_probs=43.6
Q ss_pred HHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 569 SFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
..+.+.++|++|+..++..+.....+.-.+.-+..++..+..+|++++|+...++++. +|..
T Consensus 45 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~ 107 (272)
T 3u4t_A 45 VCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR 107 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc
Confidence 4677789999999999988862211111122256677777888999999999988875 4544
No 88
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=43.52 E-value=50 Score=31.52 Aligned_cols=61 Identities=10% Similarity=0.016 Sum_probs=43.0
Q ss_pred HHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccc
Q 037957 566 LGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSW 629 (841)
Q Consensus 566 ~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~ 629 (841)
..+..+.+.+++++|+..|+..+...... ..-+..++..+.++|++++|+..+++++. +|.
T Consensus 144 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 144 LEGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 34467778899999999998877522111 22356667667788999999999888874 444
No 89
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=43.39 E-value=30 Score=32.66 Aligned_cols=57 Identities=5% Similarity=-0.109 Sum_probs=42.2
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
.+..+.+.++|++|+..|+..+... +.. ..-+..++..+..+|++++|+...++++.
T Consensus 43 lg~~~~~~g~~~~A~~~~~~al~~~-~~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 99 (213)
T 1hh8_A 43 IGCMYTILKNMTEAEKAFTRSINRD-KHL--AVAYFQRGMLYYQTEKYDLAIKDLKEALI 99 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-ccc--hHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3457778999999999999877522 111 12355667777889999999999988875
No 90
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=42.96 E-value=71 Score=32.79 Aligned_cols=60 Identities=15% Similarity=0.074 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHhcCC-CCCCccchhHHHHHHhhhhcCCchHHHHHHHh
Q 037957 562 KVVLLGISFLEREQRFNDAINLLRRLLSCF-TCDSRRGYWTLRLSIDLEHMGCPSESLSVAEG 623 (841)
Q Consensus 562 ril~~~~~~LER~k~~~~A~~ll~~Ll~~~-~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~ 623 (841)
..+...+..+.+.++++.|++.|+.++... .|. . ..++..++..+.+.|++++|+..+++
T Consensus 66 ~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~-~-~~~~~~la~~~~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 66 QAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT-N-TTFLLMAASIYFYDQNPDAALRTLHQ 126 (291)
T ss_dssp HHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS-C-HHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC-C-HHHHHHHHHHHHHCCCHHHHHHHHhC
Confidence 344455678889999999999999987643 232 2 34567777778899999999999887
No 91
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=42.96 E-value=24 Score=37.32 Aligned_cols=60 Identities=12% Similarity=-0.010 Sum_probs=43.8
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
+..+-+.++|++|+..|+..+...... .+-|.+++..+.++|++++|....++++. +|..
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~ 297 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEEEKN---PKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 457778999999999999887622111 23477888888999999999999999874 5654
No 92
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=42.94 E-value=29 Score=33.35 Aligned_cols=60 Identities=8% Similarity=-0.026 Sum_probs=45.2
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
+..+.+.++|++|+..|+..+...+.. ...+..++..+..+|++++|+..+++++. +|..
T Consensus 49 ~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 109 (228)
T 4i17_A 49 GVCADNIKKYKEAADYFDIAIKKNYNL---ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGN 109 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCSH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHhhcHHHHHHHHHHHHHhCcch---HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence 457778999999999999887532211 23466777778899999999999998875 5654
No 93
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=42.36 E-value=45 Score=34.33 Aligned_cols=59 Identities=14% Similarity=0.002 Sum_probs=42.6
Q ss_pred HHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 569 SFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
..+...+++++|+.+|+.++... +. . ..-+..++..+.++|++++|.+..++++. +|..
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~~-p~-~-~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADKC-SP-T-LLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHS-CC-C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhCchHHHHHHHHHHHHHHhC-CC-c-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 34445689999999999988742 22 1 22355566677899999999999999874 5654
No 94
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=42.32 E-value=42 Score=32.54 Aligned_cols=59 Identities=17% Similarity=0.071 Sum_probs=44.7
Q ss_pred HHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhh-cCccc
Q 037957 569 SFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL-LDSWV 630 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l-~dP~~ 630 (841)
..+-+.+++++|+..|+..+...+-. ...+..++..+..+|++++|+...++++ .+|..
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 72 (217)
T 2pl2_A 13 VQLYALGRYDAALTLFERALKENPQD---PEALYWLARTQLKLGLVNPALENGKTLVARTPRY 72 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 56777899999999999987632221 2235566777788999999999999987 46765
No 95
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=42.31 E-value=54 Score=29.26 Aligned_cols=57 Identities=18% Similarity=0.099 Sum_probs=41.8
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcC
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLD 627 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~d 627 (841)
+..+.+.+++++|+..++..+... +.. ...+..++..+.++|++++|....++++..
T Consensus 83 a~~~~~~~~~~~A~~~~~~~~~~~-~~~--~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 83 GLTYVQVQKYDLAVPLLIKVAEAN-PIN--FNVRFRLGVALDNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-cHh--HHHHHHHHHHHHHcCcHHHHHHHHHHHHhc
Confidence 456777899999999999876522 111 223556666678899999999999888743
No 96
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=41.43 E-value=62 Score=32.22 Aligned_cols=62 Identities=10% Similarity=-0.039 Sum_probs=46.6
Q ss_pred HHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 566 LGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 566 ~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
..+..+.+.+++++|+..|+..+..... ....+..++..+.++|++++|....++++. +|..
T Consensus 241 ~la~~~~~~g~~~~A~~~~~~a~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 303 (330)
T 3hym_B 241 NLGHVCRKLKKYAEALDYHRQALVLIPQ---NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDD 303 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT---CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhCcc---chHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCc
Confidence 3346778899999999999988752211 133467777778899999999999999985 4543
No 97
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=41.37 E-value=26 Score=33.90 Aligned_cols=61 Identities=16% Similarity=0.057 Sum_probs=42.0
Q ss_pred HHHHHHHHhhhhchHHHHHHHHHHhc-CCC-CC----Ccc----chhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 564 VLLGISFLEREQRFNDAINLLRRLLS-CFT-CD----SRR----GYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 564 l~~~~~~LER~k~~~~A~~ll~~Ll~-~~~-~~----~rR----G~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
+.+|. .+-+.++|++|+..|+.-|. .+- +. ... -.| ..++..+..+|++++|+..+.+++.
T Consensus 15 ~~~G~-~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~-~n~g~al~~Lgr~~eAl~~~~kAL~ 85 (159)
T 2hr2_A 15 LSDAQ-RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCH-AGLAEALAGLRSFDEALHSADKALH 85 (159)
T ss_dssp HHHHH-HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHH-HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHH-HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45554 45568999999999998775 221 11 110 034 4445668899999999999999985
No 98
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=41.27 E-value=39 Score=30.02 Aligned_cols=59 Identities=12% Similarity=0.129 Sum_probs=42.8
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSW 629 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~ 629 (841)
+..+-+.++|+.|+..|+..+...... ..-+..++..+.++|++++|+...++++. +|.
T Consensus 20 a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 79 (166)
T 1a17_A 20 ANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKK 79 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 356667899999999999887622111 22355667677889999999999988874 454
No 99
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=41.13 E-value=42 Score=31.28 Aligned_cols=57 Identities=12% Similarity=-0.111 Sum_probs=42.7
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
.+..+.+.+++++|+..++..+.... . ....+..++..+.++|++++|....++++.
T Consensus 119 l~~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 175 (225)
T 2vq2_A 119 KGICSAKQGQFGLAEAYLKRSLAAQP-Q--FPPAFKELARTKMLAGQLGDADYYFKKYQS 175 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST-T--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-C--CchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34677889999999999998775221 1 133466677777889999999999988875
No 100
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=40.64 E-value=40 Score=33.34 Aligned_cols=59 Identities=7% Similarity=-0.092 Sum_probs=35.2
Q ss_pred HHHHhhhhchHHHHHHHHHHhcC-CCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSC-FTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~-~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
+..+.+.+++++|+.+|+..+.. .-.+..++..+..++..+...|++++|+..+++++.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 71 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 71 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35666678888888888777652 111111122344555555677888888777766643
No 101
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=40.60 E-value=19 Score=34.68 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=28.4
Q ss_pred HhhcCHHHHHHHHHhhhccCCCCchHHHHHHHHhhcc
Q 037957 384 CNLLTVSELREISCVLQNCHRGSRKQKVIASLLCFYE 420 (841)
Q Consensus 384 l~lLtk~EL~~l~~~~~~~~~~~~K~~Li~~L~~~~~ 420 (841)
+.-||++||+++++..... .+.+|++||+.|.....
T Consensus 61 L~kltV~eLK~~l~~~gL~-~~GkKadLI~Ri~~~l~ 96 (151)
T 1jjr_A 61 LGKFTVPMLKEACRAYGLK-SGLKKQELLEALTKHFQ 96 (151)
T ss_dssp TTSSCHHHHHHHHHHHTCC-CCSSSHHHHHHHHHTTC
T ss_pred HHhccHHHHHHHHHHcCCC-CcccHHHHHHHHHHHHh
Confidence 3458999999999987654 35689999999987543
No 102
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=40.60 E-value=40 Score=32.81 Aligned_cols=61 Identities=16% Similarity=0.004 Sum_probs=44.6
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
.+..+.+.+++++|+..|+..+...... ...+..++..+..+|++++|+...++++. +|..
T Consensus 83 la~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 83 LGIYLTQAGNFDAAYEAFDSVLELDPTY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHhcCccc---cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 3467778999999999999887622111 23466677777889999999999988874 4543
No 103
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=40.49 E-value=66 Score=32.75 Aligned_cols=60 Identities=13% Similarity=0.075 Sum_probs=44.6
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
+..+.+.++|++|+..|+..+...+. ....+..++..+.++|++++|+..+++++. +|..
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 71 (281)
T 2c2l_A 11 GNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELDGQS 71 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 35677899999999999988762211 123456667777899999999999999875 4544
No 104
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=40.23 E-value=65 Score=30.95 Aligned_cols=57 Identities=11% Similarity=-0.164 Sum_probs=43.4
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
.+..+.+.+++++|++.|+..+.... . ....+..++..+..+|++++|+...++++.
T Consensus 77 la~~~~~~~~~~~A~~~~~~a~~~~~-~--~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 77 LAVVFQTEMEPKLADEEYRKALASDS-R--NARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCc-C--cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34677789999999999998875221 1 123456667667889999999999999988
No 105
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=40.23 E-value=53 Score=31.35 Aligned_cols=55 Identities=9% Similarity=0.021 Sum_probs=43.4
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
+..+-+.++|++|+..|+..+... . ....+..++..+.++|++++|+..+++++.
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~~-~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 66 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWELH-K---DITYLNNRAAAEYEKGEYETAISTLNDAVE 66 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-C---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhh-c---cHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 356677899999999999887633 2 234567777778899999999999998875
No 106
>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Probab=40.18 E-value=29 Score=30.07 Aligned_cols=55 Identities=18% Similarity=0.284 Sum_probs=39.7
Q ss_pred EEEEEeeeeeccCc----ccCCCCeEEEEeCCCCCCCCCceEEEecCCCccccccccccchh
Q 037957 157 LRTFIVGRRYSDEK----EIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELS 214 (841)
Q Consensus 157 ~~~~IvG~~yy~~~----~~~~ge~v~L~REP~N~~D~nAI~V~~~~g~~~~~lGyipr~~a 214 (841)
.+..+|-..|.... .++.|+.|.++-.+++ |++=..|.+..+ ...+-||||..+-
T Consensus 17 ~e~~valydF~Ar~~~ELS~~kGd~vevle~~~~--~peW~lvr~~~~-~~~qeGlVPsnyl 75 (82)
T 1u3o_A 17 CELTVVLQDFSAAHSSELSIQVGQTVELLERPSE--RPGWCLVRTTER-SPPQEGLVPSSTL 75 (82)
T ss_dssp CEEEECSSCBCCCSTTCCCBCTTCEEEESSCTTS--STTEEEEEESSS-SSCEEEEEEGGGS
T ss_pred ceEEEEEeeecCCCCCeeeEcCCCEEEEEecCCC--CCCEEEEEECCC-CCCcEeeccccEE
Confidence 45666666666433 6889999999987765 888888876443 1136799999875
No 107
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=38.80 E-value=91 Score=32.39 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=23.4
Q ss_pred HHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhh
Q 037957 569 SFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL 625 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l 625 (841)
..+.+.+++++|+..|+..+... +. . ..-+..++..+.+.|++++|+...++++
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PE-F-AAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TT-C-HHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CC-c-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444555555555555444311 11 0 1123333434445555555555555444
No 108
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=38.42 E-value=66 Score=30.13 Aligned_cols=63 Identities=8% Similarity=-0.102 Sum_probs=44.7
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCC-------------ccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDS-------------RRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~-------------rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
+..+.+.++|++|++.|+..+....... .-..-+..++..+.++|++++|....++++. +|..
T Consensus 78 g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 78 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 4677789999999999998876321111 0113355667777899999999999998874 4554
No 109
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=37.67 E-value=39 Score=32.67 Aligned_cols=66 Identities=12% Similarity=0.009 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHhcCC-----CCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcC
Q 037957 562 KVVLLGISFLEREQRFNDAINLLRRLLSCF-----TCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLD 627 (841)
Q Consensus 562 ril~~~~~~LER~k~~~~A~~ll~~Ll~~~-----~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~d 627 (841)
.+....+..+.+.+++++|+..|+..+... .........+..++..+..+|++++|+..+++++.-
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344445578888999999999998876521 111122445666777778899999999998888754
No 110
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=37.28 E-value=32 Score=36.30 Aligned_cols=63 Identities=13% Similarity=-0.040 Sum_probs=45.6
Q ss_pred HHHHHHhhhhchHHHHHHHHHHhcCCC-CCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccc
Q 037957 566 LGISFLEREQRFNDAINLLRRLLSCFT-CDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSW 629 (841)
Q Consensus 566 ~~~~~LER~k~~~~A~~ll~~Ll~~~~-~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~ 629 (841)
.....+++++++++|+.+|+.-+.... +..---. +.++++.|.++|+.++|.++.++++. +|.
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da-~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAI-AWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHH-HHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 334789999999999999998765332 2111111 45566778999999999999998874 565
No 111
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=36.85 E-value=41 Score=37.60 Aligned_cols=61 Identities=11% Similarity=-0.131 Sum_probs=45.9
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
.+..+.+.++|++|++.|+..+...+.. ...+.+++..+.++|++++|++..++++. +|..
T Consensus 46 lg~~~~~~g~~~~A~~~~~~al~l~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~ 107 (477)
T 1wao_1 46 RSLAYLRTECYGYALGDATRAIELDKKY---IKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107 (477)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3467778999999999999887632211 23466778778899999999999998874 5654
No 112
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=36.74 E-value=1.1e+02 Score=31.19 Aligned_cols=64 Identities=13% Similarity=0.030 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHhcCCCC---CCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 562 KVVLLGISFLEREQRFNDAINLLRRLLSCFTC---DSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 562 ril~~~~~~LER~k~~~~A~~ll~~Ll~~~~~---~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
......+.++.+.++|++|+..|+.-+.-... +..-..-+..++..++. |++++|+...++++.
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~ 143 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA 143 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 34444556777788888888888765541100 11112335566666667 899998888887764
No 113
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=36.63 E-value=36 Score=40.62 Aligned_cols=61 Identities=10% Similarity=0.032 Sum_probs=41.0
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
.+.++.+.+++++|++.|+..+.-. +. . ..-|..|+..+..+|++++|++..+++++ +|..
T Consensus 49 Lg~~l~~~g~~~eA~~~~~~Al~l~-P~-~-~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~ 110 (723)
T 4gyw_A 49 LASVLQQQGKLQEALMHYKEAIRIS-PT-F-ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF 110 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TT-C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CC-C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 3457778888888888888776511 11 1 12255566667788888888888888764 6654
No 114
>2out_A MU-like prophage flumu protein GP35, protein HI1507 in MU-like prophage flumu region...; structural genomics, hypothetical protein; NMR {Haemophilus influenzae} SCOP: a.140.3.2 d.344.1.1
Probab=36.52 E-value=14 Score=34.66 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=27.4
Q ss_pred HhhcCHHHHHHHHHhhhcc-CCCCchHHHHHHHHh
Q 037957 384 CNLLTVSELREISCVLQNC-HRGSRKQKVIASLLC 417 (841)
Q Consensus 384 l~lLtk~EL~~l~~~~~~~-~~~~~K~~Li~~L~~ 417 (841)
++-+|++|||+.+.+..+. .++.+|++|+..|..
T Consensus 89 l~~lTV~ELKa~Lde~gIe~~ssakKaELiaLL~~ 123 (131)
T 2out_A 89 LNTFTVEQLKAQLTERGITFKQSATKAELIALFAP 123 (131)
T ss_dssp STTCCSHHHHHHHHHHTCCCSSSCCSHHHHHHCCS
T ss_pred cccccHHHHHHHHHHcCCcccccCCHHHHHHHHHH
Confidence 4558999999999987743 357889999988864
No 115
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=36.28 E-value=39 Score=30.72 Aligned_cols=67 Identities=16% Similarity=0.095 Sum_probs=44.9
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHhcCC-------CC--------CCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-
Q 037957 563 VVLLGISFLEREQRFNDAINLLRRLLSCF-------TC--------DSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL- 626 (841)
Q Consensus 563 il~~~~~~LER~k~~~~A~~ll~~Ll~~~-------~~--------~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~- 626 (841)
+..+| ..+-+.++|++|+..|...+... .+ ......-|..++..+.++|++++|+..+++++.
T Consensus 14 ~~~~G-~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 14 LRQKG-NELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 33455 45566899999999998776520 00 011122355566677889999999999999875
Q ss_pred Cccc
Q 037957 627 DSWV 630 (841)
Q Consensus 627 dP~~ 630 (841)
||..
T Consensus 93 ~p~~ 96 (162)
T 3rkv_A 93 EETN 96 (162)
T ss_dssp STTC
T ss_pred CCcc
Confidence 6664
No 116
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=36.04 E-value=69 Score=31.00 Aligned_cols=62 Identities=16% Similarity=-0.074 Sum_probs=46.4
Q ss_pred HHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 566 LGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 566 ~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
..+..+-+.+++++|+..|+..+...+ . ....+..++..+.++|++++|+...++++. +|..
T Consensus 48 ~l~~~~~~~~~~~~A~~~~~~al~~~~-~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~ 110 (275)
T 1xnf_A 48 ERGVLYDSLGLRALARNDFSQALAIRP-D--MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY 110 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHcCC-C--cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccc
Confidence 334677789999999999998876221 1 123467778778899999999999999886 5654
No 117
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=35.84 E-value=39 Score=34.86 Aligned_cols=57 Identities=19% Similarity=0.050 Sum_probs=37.0
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
.+..+.+.+++++|+..|+..+...+.. ..-+..++..+.++|++++|....++++.
T Consensus 253 l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 253 LGATLANGDRSEEAVEAYTRALEIQPGF---IRSRYNLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456677888888888887766521111 22345566666778888888887777753
No 118
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=35.83 E-value=49 Score=31.77 Aligned_cols=56 Identities=20% Similarity=0.198 Sum_probs=40.1
Q ss_pred hchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhh-cCcccc
Q 037957 575 QRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL-LDSWVR 631 (841)
Q Consensus 575 k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l-~dP~~~ 631 (841)
.+.++++.+|+.++....+..+|-.+|. ||+-..++|++++|...++.+| .+|.+.
T Consensus 49 ~~~~~gI~lLe~ll~~~~p~~~rd~lY~-LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 49 DDIRKGIVLLEELLPKGSKEEQRDYVFY-LAVGNYRLKEYEKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHH-HHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHhcCCccchHHHHHH-HHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 3778899999988764323244554443 4555689999999999999998 567664
No 119
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=35.79 E-value=60 Score=33.43 Aligned_cols=61 Identities=18% Similarity=0.070 Sum_probs=45.5
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
.+..+.+.+++++|+..|+..+...+.. ..-|..++..+..+|++++|+...++++. +|..
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 280 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPED---YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF 280 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 3467788999999999999887622111 22456677777889999999999999875 5654
No 120
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=35.70 E-value=76 Score=35.02 Aligned_cols=62 Identities=10% Similarity=-0.085 Sum_probs=44.0
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccccc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWVR 631 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~~ 631 (841)
.+..+-+.++|++|+..|...+...... .+-+.+++..+.++|++++|+...++++. +|...
T Consensus 323 la~~~~~~g~~~~A~~~~~~al~~~p~~---~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 323 LAMCYLKLREYTKAVECCDKALGLDSAN---EKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 3457778999999999999887622211 22366777778899999999999999874 56553
No 121
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=35.54 E-value=40 Score=32.63 Aligned_cols=65 Identities=12% Similarity=0.063 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHhcCC-----CCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcC
Q 037957 563 VVLLGISFLEREQRFNDAINLLRRLLSCF-----TCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLD 627 (841)
Q Consensus 563 il~~~~~~LER~k~~~~A~~ll~~Ll~~~-----~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~d 627 (841)
+....+..+...+++++|+..|+..+... ......+.-+..++..+..+|++++|+...++++.-
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 114 (283)
T 3edt_B 45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114 (283)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 33344467788999999999998776421 111122334566777778899999999998888653
No 122
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=35.30 E-value=74 Score=30.12 Aligned_cols=57 Identities=11% Similarity=-0.040 Sum_probs=40.7
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
.+..+.+.+++++|+..++..+..... -..-+..++..+..+|++++|+...++++.
T Consensus 63 la~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 119 (243)
T 2q7f_A 63 FANLLSSVNELERALAFYDKALELDSS---AATAYYGAGNVYVVKEMYKEAKDMFEKALR 119 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345677889999999999887652211 123355566667788999999998888864
No 123
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=35.26 E-value=96 Score=29.53 Aligned_cols=62 Identities=6% Similarity=-0.114 Sum_probs=44.2
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcC-cc
Q 037957 565 LLGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLD-SW 629 (841)
Q Consensus 565 ~~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~d-P~ 629 (841)
.+| ..+-+.++|++|+..|+..+........ ..|+. ++..+.++|++++|+..+++++.. |.
T Consensus 12 ~~g-~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~-~~~~~~~~~~~~~A~~~~~~al~~~p~ 74 (228)
T 4i17_A 12 NEG-NDALNAKNYAVAFEKYSEYLKLTNNQDS-VTAYN-CGVCADNIKKYKEAADYFDIAIKKNYN 74 (228)
T ss_dssp HHH-HHHHHTTCHHHHHHHHHHHHHHTTTCCH-HHHHH-HHHHHHHTTCHHHHHHHHHHHHHTTCS
T ss_pred HHH-HHHHHccCHHHHHHHHHHHHhccCCCCc-HHHHH-HHHHHHHhhcHHHHHHHHHHHHHhCcc
Confidence 344 4666789999999999988762221222 23444 677788999999999999998854 44
No 124
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=35.11 E-value=64 Score=32.95 Aligned_cols=60 Identities=13% Similarity=0.067 Sum_probs=43.9
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSW 629 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~ 629 (841)
.+..+.+.+++++|+..|+..+...+.. ..-+..++..+.++|++++|+...++++. +|.
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 283 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVRPND---YLLWNKLGATLANGNQSEEAVAAYRRALELQPG 283 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3467778999999999999877522111 22356677777889999999999998875 454
No 125
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=34.68 E-value=95 Score=29.30 Aligned_cols=58 Identities=16% Similarity=0.055 Sum_probs=40.1
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcC
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLD 627 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~d 627 (841)
.+..+.+.+++++|+..|+..+.... . ....+..++..+...|++++|+...++++..
T Consensus 131 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 131 LGTVLVKLEQPKLALPYLQRAVELNE-N--DTEARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHCT-T--CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-c--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567778899999999887765211 1 1224556666667888999998888887643
No 126
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=34.42 E-value=17 Score=33.85 Aligned_cols=56 Identities=14% Similarity=-0.021 Sum_probs=39.5
Q ss_pred HHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcC
Q 037957 569 SFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLD 627 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~d 627 (841)
..+.+.+++++|+..|+..+... |..- .-+..++..+...|++++|+...++++..
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~-P~~~--~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDEL-QSRG--DVKLAKADCLLETKQFELAQELLATIPLE 69 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHH-HTSH--HHHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcH--HHHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence 46667889999999998776521 1111 12455666677889999999999988754
No 127
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=34.01 E-value=72 Score=33.19 Aligned_cols=59 Identities=12% Similarity=-0.020 Sum_probs=38.4
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcC-cc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLD-SW 629 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~d-P~ 629 (841)
+..+.+.+++++|++.|+..+...+. . ..-+..++..+...|+.++|....++++.. |.
T Consensus 278 ~~~~~~~g~~~~A~~~~~~al~~~p~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 337 (388)
T 1w3b_A 278 ANALKEKGSVAEAEDCYNTALRLCPT--H-ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE 337 (388)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHCTT--C-HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcc--c-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 35677778888888888877652111 1 122455565567778888888888887653 44
No 128
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=33.89 E-value=41 Score=33.20 Aligned_cols=65 Identities=6% Similarity=-0.086 Sum_probs=44.9
Q ss_pred HHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhh--------cCCchHHHHHHHhhhc-Cccc
Q 037957 566 LGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEH--------MGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 566 ~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Leh--------l~~~~eAl~l~e~~l~-dP~~ 630 (841)
..+..+.+.++|++|+..|+..+...+-......-+..++..+.. +|++++|+...++++. +|..
T Consensus 57 ~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 57 YLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence 344677889999999999999886322111111224456666667 8999999999998874 5654
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=33.65 E-value=93 Score=28.33 Aligned_cols=57 Identities=7% Similarity=-0.039 Sum_probs=41.3
Q ss_pred Hhhhhch--HHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 571 LEREQRF--NDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 571 LER~k~~--~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
+.+.+++ ++|+..|+..+...+ .. ...+..++..+..+|++++|....++++. +|..
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~~~p-~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 89 YYQASQHMTAQTRAMIDKALALDS-NE--ITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHCT-TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHhcCCcchHHHHHHHHHHHHhCC-Cc--HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 5577888 999999998876221 11 12355667677889999999999998875 4654
No 130
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=33.62 E-value=24 Score=30.41 Aligned_cols=57 Identities=11% Similarity=-0.024 Sum_probs=36.4
Q ss_pred hhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 574 EQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 574 ~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
.+++++|+..|+..+...........-+..++..+..+|++++|+...++++. +|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 60 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH 60 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 57788899999888763100011122355666677889999999999999875 5665
No 131
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=33.60 E-value=57 Score=33.26 Aligned_cols=57 Identities=19% Similarity=0.091 Sum_probs=36.7
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhh
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL 625 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l 625 (841)
+..+.+.+++++|+..|+..+... +...++.-+.+|+..+..+|+.++|.....+++
T Consensus 226 a~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 226 ALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 457777888888888888877522 111223335666666777888877776655443
No 132
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=33.37 E-value=47 Score=36.14 Aligned_cols=59 Identities=15% Similarity=0.163 Sum_probs=32.2
Q ss_pred HHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCC-chHHHHHHHhhhc-Cccc
Q 037957 569 SFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGC-PSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~-~~eAl~l~e~~l~-dP~~ 630 (841)
.++.+.+++++|++.|+..+... +..- -.| ..++..+.++|+ +++|+..+++++. +|..
T Consensus 105 ~~~~~~g~~~~Al~~~~~al~l~-P~~~-~a~-~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~ 165 (382)
T 2h6f_A 105 AVLQRDERSERAFKLTRDAIELN-AANY-TVW-HFRRVLLKSLQKDLHEEMNYITAIIEEQPKN 165 (382)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHC-TTCH-HHH-HHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHCCChHHHHHHHHHHHHhC-ccCH-HHH-HHHHHHHHHcccCHHHHHHHHHHHHHHCCCC
Confidence 45666677777777777665411 1111 123 333344566665 7777777766653 4543
No 133
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=33.36 E-value=61 Score=34.28 Aligned_cols=66 Identities=9% Similarity=-0.113 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 562 KVVLLGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 562 ril~~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
.+....+..+.+.+++++|+..++..+... +. . ...|..++..+..+|++++|....++++. +|..
T Consensus 296 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~-~-~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 296 RSKERICHCFSKDEKPVEAIRVCSEVLQME-PD-N-VNALKDRAEAYLIEEMYDEAIQDYETAQEHNEND 362 (450)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT-C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cc-c-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcch
Confidence 344445578899999999999999876521 11 1 23456666667889999999999999875 4654
No 134
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=33.32 E-value=46 Score=32.88 Aligned_cols=64 Identities=9% Similarity=-0.042 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHhcC---CCC--CCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 563 VVLLGISFLEREQRFNDAINLLRRLLSC---FTC--DSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 563 il~~~~~~LER~k~~~~A~~ll~~Ll~~---~~~--~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
+....+..+.+.+++++|+++|+..+.. ... .......+..++..+.++|++++|....++++.
T Consensus 155 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 155 QLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344557888899999999999887652 100 111223455567677889999999999988874
No 135
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=33.05 E-value=69 Score=30.94 Aligned_cols=49 Identities=10% Similarity=0.064 Sum_probs=30.9
Q ss_pred hchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 575 QRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 575 k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
+++++|+..|+..+...+.. ...+..++..+..+|++++|+...++++.
T Consensus 98 g~~~~A~~~~~~al~~~P~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPRY---APLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 78888888887766521111 11244555556777888888877777664
No 136
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=32.84 E-value=1.2e+02 Score=30.06 Aligned_cols=57 Identities=7% Similarity=-0.097 Sum_probs=41.6
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcC
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLD 627 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~d 627 (841)
+..+.+.+++++|+..|+..+...... .. -+..++..+...|++++|....++++..
T Consensus 132 ~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~--~~~~l~~~~~~~~~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 132 GHSFAVESEHDQAMAAYFTAAQLMKGC-HL--PMLYIGLEYGLTNNSKLAERFFSQALSI 188 (330)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTC-SH--HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHhcccc-HH--HHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 467778899999999999877522111 11 2444666678899999999999998764
No 137
>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A
Probab=32.69 E-value=20 Score=28.16 Aligned_cols=39 Identities=15% Similarity=0.262 Sum_probs=29.6
Q ss_pred ccCCCCeEEEEeCCCCCCCCCceEEEecCCCccccccccccchhhhcc
Q 037957 171 EIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSEYLS 218 (841)
Q Consensus 171 ~~~~ge~v~L~REP~N~~D~nAI~V~~~~g~~~~~lGyipr~~a~~la 218 (841)
.++.|+.|.+..+ |.+=..+.+.+| +.|++|......+.
T Consensus 19 s~~~Gd~i~v~~~-----~~~Ww~~~~~~g----~~G~~P~~yv~~~~ 57 (60)
T 1i07_A 19 SVMKDDVLEILDD-----RRQWWKVRNASG----DSGFVPNNILDIMR 57 (60)
T ss_dssp CBCTTCEEEECGG-----GCCEEEEECTTS----CEEEEEGGGEEEEC
T ss_pred cCCCCCEEEEEEc-----CCCeEEEEECCC----CEEEEEHHHeEEcc
Confidence 5789999999987 445566666666 89999998776554
No 138
>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1
Probab=32.24 E-value=34 Score=27.52 Aligned_cols=41 Identities=15% Similarity=0.213 Sum_probs=29.7
Q ss_pred ccCCCCeEEEEeCCCCCCCCCceEEEecCCCccccccccccchhhhccc
Q 037957 171 EIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSEYLSP 219 (841)
Q Consensus 171 ~~~~ge~v~L~REP~N~~D~nAI~V~~~~g~~~~~lGyipr~~a~~la~ 219 (841)
.++.||.|.+..+.+ .+=..+.+.+| +.|++|.......+|
T Consensus 21 sf~~Gd~i~v~~~~~----~~Ww~g~~~~g----~~G~~P~~yv~~~~~ 61 (65)
T 1b07_A 21 PFKKGDILRIRDKPE----EQWWNAEDSEG----KRGMIPVPYVEKYHH 61 (65)
T ss_dssp CBCTTCEEEEEECSS----SSEEEEECTTS----CEEEEEGGGEEECC-
T ss_pred CCcCCCEEEEEEecC----CCeEEEEECCC----CEEEEChHHEeecCC
Confidence 578999999998754 33355555555 899999998766654
No 139
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=32.13 E-value=51 Score=34.47 Aligned_cols=59 Identities=7% Similarity=-0.058 Sum_probs=37.4
Q ss_pred HHHHhhhhchHHHHHHHHHHhcC-CCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSC-FTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~-~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
+..+.+.++|++|+..|+..+.. .-.+...+.-+..++..+.++|++++|+...++++.
T Consensus 55 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (411)
T 4a1s_A 55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLT 114 (411)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35667788888888888877652 111111122345556666778888888887777654
No 140
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=32.11 E-value=81 Score=31.26 Aligned_cols=60 Identities=18% Similarity=0.139 Sum_probs=42.2
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSW 629 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~ 629 (841)
.+..+.+.+++++|+..++..+.... .. ..-+..++..+...|++++|+...++++. +|.
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRP-DD--AQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-Cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 34677788999999999988765221 11 22355666667788999999999888764 344
No 141
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=32.03 E-value=63 Score=32.46 Aligned_cols=63 Identities=14% Similarity=0.075 Sum_probs=44.0
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCC-CccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCD-SRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~-~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
+..+.+.+++++|+..|+..+...... .-....+..++..+.++|++++|+..+++++. +|..
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 305 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN 305 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc
Confidence 467888999999999999887622111 00011133456667889999999999999986 5654
No 142
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=31.95 E-value=72 Score=32.55 Aligned_cols=64 Identities=17% Similarity=0.077 Sum_probs=40.9
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcC-CCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSC-FTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~-~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
.+.++.+.+++++|..+|+..+.. ..++......|..++..+...|+.++|..+..+++. .|..
T Consensus 209 ~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 209 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 346777788888888888887763 223322223344444434567888888888877764 5653
No 143
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=31.47 E-value=90 Score=34.99 Aligned_cols=62 Identities=16% Similarity=-0.034 Sum_probs=41.9
Q ss_pred HHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 566 LGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 566 ~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
..+..+.+.+++++|++.|+..+... +.. ..-+..++..+..+|++++|.+..++++. +|..
T Consensus 62 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 124 (568)
T 2vsy_A 62 RLGRVRWTQQRHAEAAVLLQQASDAA-PEH--PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 34467777888888888888776521 111 22355666667788888888888888764 4543
No 144
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=30.91 E-value=60 Score=33.46 Aligned_cols=57 Identities=7% Similarity=-0.061 Sum_probs=30.6
Q ss_pred HHHhhhhchHHHHHHHHHHhcC-CCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhh
Q 037957 569 SFLEREQRFNDAINLLRRLLSC-FTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL 625 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~~-~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l 625 (841)
..+-+.++|++|+..|+..+.. .-.+...+.-+..++..+.++|++++|+...++++
T Consensus 17 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 74 (406)
T 3sf4_A 17 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 4555667777777777666542 11111112234445555556677777766666553
No 145
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=30.90 E-value=69 Score=29.47 Aligned_cols=66 Identities=8% Similarity=-0.228 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHhcCC-CCCCcc--chhHHHHHHhhhhcCCchHHHHHHHhhhcC
Q 037957 562 KVVLLGISFLEREQRFNDAINLLRRLLSCF-TCDSRR--GYWTLRLSIDLEHMGCPSESLSVAEGGLLD 627 (841)
Q Consensus 562 ril~~~~~~LER~k~~~~A~~ll~~Ll~~~-~~~~rR--G~W~~RLal~Lehl~~~~eAl~l~e~~l~d 627 (841)
.+....+..+.+.+++++|+..++..+... ...... +.-+..++..+..+|++++|....++++.-
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 344444567777899999999998766411 011111 111234555567889999999888877643
No 146
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=30.88 E-value=74 Score=32.49 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=41.5
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcC
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLD 627 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~d 627 (841)
.+.++++.+++++|..+|+..+...+..... . |..++..+.+.|+.++|..+.++++..
T Consensus 105 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~-~-~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTL-V-YIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHH-H-HHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhccccCccH-H-HHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3467888999999999999988632211110 2 444444456789999999999998875
No 147
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=30.84 E-value=52 Score=32.50 Aligned_cols=65 Identities=15% Similarity=0.057 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHhcCC---CCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 562 KVVLLGISFLEREQRFNDAINLLRRLLSCF---TCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 562 ril~~~~~~LER~k~~~~A~~ll~~Ll~~~---~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
.+....+..+.+.+++++|+..|+..+... ........-+..++..+.++|++++|....++++.
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 334444567777788888888777655411 00001111233455556677888888777776653
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=30.74 E-value=67 Score=29.59 Aligned_cols=65 Identities=8% Similarity=-0.110 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHhcC--CCC--CCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 562 KVVLLGISFLEREQRFNDAINLLRRLLSC--FTC--DSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 562 ril~~~~~~LER~k~~~~A~~ll~~Ll~~--~~~--~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
.+....+..+...+++++|+..++..+.. ... +...+..+..++..+..+|++++|...+++++.
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444456777899999999999877652 111 112233455566667788999999999888764
No 149
>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A
Probab=30.66 E-value=34 Score=27.88 Aligned_cols=41 Identities=24% Similarity=0.266 Sum_probs=28.9
Q ss_pred ccCCCCeEEEEeCCCCCCCCCceEEEecCCCccccccccccchhhhcccc
Q 037957 171 EIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSEYLSPL 220 (841)
Q Consensus 171 ~~~~ge~v~L~REP~N~~D~nAI~V~~~~g~~~~~lGyipr~~a~~la~l 220 (841)
.++.||.|.+..+ + .+=-.+.+.+| +.|++|......+.|+
T Consensus 22 sf~~Gd~i~vl~~-~----~~Ww~~~~~~g----~~G~~Psnyv~~~~~~ 62 (67)
T 2b86_A 22 DIKKNERLWLLDD-S----KTWWRVRNAAN----RTGYVPSNYVERKLEH 62 (67)
T ss_dssp CBCTTCEEEEEEC-S----SSSCEEECTTS----CEEECCCCSEEEC---
T ss_pred ccCCCCEEEEEec-C----CCeEEEEeCCC----CEEEeChHHEeEcCCC
Confidence 5789999999987 2 24455655556 8999999987766654
No 150
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=30.62 E-value=52 Score=34.41 Aligned_cols=67 Identities=18% Similarity=0.027 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHhcCC---CCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcC
Q 037957 561 SKVVLLGISFLEREQRFNDAINLLRRLLSCF---TCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLD 627 (841)
Q Consensus 561 ~ril~~~~~~LER~k~~~~A~~ll~~Ll~~~---~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~d 627 (841)
..+....+.++.+.+++++|+..|+..+... .-.......+..++..+.++|++++|+...++++.-
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 303 AQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3445555678889999999999998776411 001111223455666678899999999999888654
No 151
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=30.57 E-value=70 Score=33.61 Aligned_cols=64 Identities=17% Similarity=0.152 Sum_probs=45.1
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCC------------ccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDS------------RRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~------------rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
.+..+-+.++|++|+..|+..+....... .+..-|..++..+.++|++++|+..+++++. +|..
T Consensus 153 ~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 229 (336)
T 1p5q_A 153 RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNN 229 (336)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 34577789999999999998876211110 0012356677777889999999999999874 5654
No 152
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=30.27 E-value=3.7e+02 Score=26.18 Aligned_cols=70 Identities=13% Similarity=0.163 Sum_probs=43.9
Q ss_pred cCchHHHHHHHHHHHHHHhhhhchHHHHHHHHHHhc--CCCCCCccc--------------------hhHHHHHHhhhhc
Q 037957 554 FSASWVYSKVVLLGISFLEREQRFNDAINLLRRLLS--CFTCDSRRG--------------------YWTLRLSIDLEHM 611 (841)
Q Consensus 554 F~~~~v~~ril~~~~~~LER~k~~~~A~~ll~~Ll~--~~~~~~rRG--------------------~W~~RLal~Lehl 611 (841)
++|..-|.-++..| +.+=..++|-+|...|++-|. +.....+.+ .-.-++|.++-.+
T Consensus 57 ~sp~~~~~~l~~la-dalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l 135 (167)
T 3ffl_A 57 FSPPQKYQLLVYHA-DSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVL 135 (167)
T ss_dssp SCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHH
Confidence 35556665555555 566668999999999887543 111000000 1234577888889
Q ss_pred CCchHHHHHHHhh
Q 037957 612 GCPSESLSVAEGG 624 (841)
Q Consensus 612 ~~~~eAl~l~e~~ 624 (841)
|++++|+.+.+.+
T Consensus 136 ~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 136 KQDKDAIAILDGI 148 (167)
T ss_dssp TCHHHHHHHHHTS
T ss_pred CCHHHHHHHHhcC
Confidence 9999999988754
No 153
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=29.72 E-value=55 Score=33.46 Aligned_cols=58 Identities=17% Similarity=0.062 Sum_probs=43.4
Q ss_pred HHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 566 LGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 566 ~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
..+..+.+.+++++|+..|+..+...+ . ...-+..++..+.++|++++|....++++.
T Consensus 256 ~l~~~~~~~g~~~~A~~~~~~al~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 256 KLGATLANGNQSEEAVAAYRRALELQP-G--YIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-T--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-C--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344678889999999999998875221 1 123356677777899999999999888864
No 154
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=29.40 E-value=68 Score=34.48 Aligned_cols=63 Identities=13% Similarity=0.000 Sum_probs=43.5
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCC--C-----------CCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCF--T-----------CDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~--~-----------~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
+..+-+.++|++|+..|+..+... . .......-|..++..+.++|++++|+..+++++. +|..
T Consensus 230 g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 306 (370)
T 1ihg_A 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSN 306 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchh
Confidence 356777899999999998776410 0 0001123356677777899999999999999985 4643
No 155
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=29.19 E-value=63 Score=32.10 Aligned_cols=58 Identities=10% Similarity=0.006 Sum_probs=42.6
Q ss_pred HHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 566 LGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 566 ~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
..+..+.+.+++++|+..|+..+.... . ....+..++..+..+|++++|....++++.
T Consensus 211 ~l~~~~~~~~~~~~A~~~~~~a~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 211 KLGATLANGNRPQEALDAYNRALDINP-G--YVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC-C--CHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344677789999999999998775221 1 122355667667889999999999888764
No 156
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=28.53 E-value=1.2e+02 Score=33.48 Aligned_cols=70 Identities=13% Similarity=0.033 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHhhhhchHHHHHHHHHHhcC---CCCCCcc--chhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 557 SWVYSKVVLLGISFLEREQRFNDAINLLRRLLSC---FTCDSRR--GYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 557 ~~v~~ril~~~~~~LER~k~~~~A~~ll~~Ll~~---~~~~~rR--G~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
.|...+-+...+.-+.++++|++|+++|+..|.. .+.+..- ..=+.-|+..+..+|++++|+.++++++.
T Consensus 283 ~~~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 283 VWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3444433333445667789999999999988862 2222221 11123344445678999999999887753
No 157
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=28.50 E-value=66 Score=31.66 Aligned_cols=63 Identities=13% Similarity=-0.022 Sum_probs=43.3
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHhcCC-----CCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcC
Q 037957 565 LLGISFLEREQRFNDAINLLRRLLSCF-----TCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLD 627 (841)
Q Consensus 565 ~~~~~~LER~k~~~~A~~ll~~Ll~~~-----~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~d 627 (841)
...+..+.+.+++++|+..|+..+... .........+..++..+..+|++++|+...++++.-
T Consensus 115 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 115 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334567888999999999998876521 111112333555666678899999999998888653
No 158
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=28.36 E-value=1.1e+02 Score=27.86 Aligned_cols=61 Identities=10% Similarity=0.028 Sum_probs=43.2
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHh-hhhcCCc--hHHHHHHHhhhc-Cccc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSID-LEHMGCP--SESLSVAEGGLL-DSWV 630 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~-Lehl~~~--~eAl~l~e~~l~-dP~~ 630 (841)
.+..+.+.++|++|+..|+..+...+.. ...+..++.. +...|++ ++|...+++++. +|..
T Consensus 50 lg~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~ 114 (177)
T 2e2e_A 50 LGEYYLWQNDYSNSLLAYRQALQLRGEN---AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNE 114 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHCSC---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCc
Confidence 3457778999999999999877522111 2235666666 4578998 999999998874 5654
No 159
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=28.36 E-value=1.1e+02 Score=30.82 Aligned_cols=66 Identities=11% Similarity=0.050 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHhcC---CCCCCccchhHHHHHHhhhhcCCc-hHHHHHHHhhh
Q 037957 560 YSKVVLLGISFLEREQRFNDAINLLRRLLSC---FTCDSRRGYWTLRLSIDLEHMGCP-SESLSVAEGGL 625 (841)
Q Consensus 560 ~~ril~~~~~~LER~k~~~~A~~ll~~Ll~~---~~~~~rRG~W~~RLal~Lehl~~~-~eAl~l~e~~l 625 (841)
...+..-.+..+.+.++|++|++.++..+.- .-.....+.-+..++..+.++|+. ++|+...++++
T Consensus 195 ~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 3445555557888899999999999877641 111111244567777777889964 88888777664
No 160
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=28.30 E-value=57 Score=36.12 Aligned_cols=64 Identities=11% Similarity=0.003 Sum_probs=46.9
Q ss_pred HHHHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 564 VLLGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 564 l~~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
....+..+.+.|++++|+++|+..+... +. . ..-|..++..+.+.|+.++|....++++. +|..
T Consensus 519 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 519 WANLGHAYRKLKMYDAAIDALNQGLLLS-TN-D-ANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC-C-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC-C-hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Confidence 3344578888999999999999887522 11 1 23456677677899999999999998874 5654
No 161
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=27.98 E-value=35 Score=37.14 Aligned_cols=59 Identities=10% Similarity=0.079 Sum_probs=34.5
Q ss_pred HHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 569 SFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
.++.+.+++++|+..|+..+...+.. - ..| ..++..+.++|++++|++.+++++. ||..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~-~-~a~-~~lg~~~~~~g~~~eAl~~~~~al~l~P~~ 233 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKN-Y-HAW-QHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTC-H-HHH-HHHHHHHHHHTCCTTHHHHHHHHHHHCTTC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccC-H-HHH-HHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 45566677777777777766511111 1 123 3334446677777777777777763 5554
No 162
>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1
Probab=27.61 E-value=49 Score=27.26 Aligned_cols=42 Identities=21% Similarity=0.377 Sum_probs=29.6
Q ss_pred ccCCCCeEEEEeCCCC-CCCCCceEEEecCCCccccccccccchhhh
Q 037957 171 EIKIGAHISLSRDPNN-VKDPNAIKVFSADSGCCKVLGYLPKELSEY 216 (841)
Q Consensus 171 ~~~~ge~v~L~REP~N-~~D~nAI~V~~~~g~~~~~lGyipr~~a~~ 216 (841)
.++.||.|.+..+.+. ..|.+=-++.+.+| +.||+|..+.+.
T Consensus 26 sf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G----~~G~~PsnyV~~ 68 (69)
T 1nm7_A 26 ALKKGDLMAILSKKDPLGRDSDWWKVRTKNG----NIGYIPYNYIEI 68 (69)
T ss_dssp CCCTTCEEEECCSSSSSCCSSSCEEEEETTT----EEEEECGGGEEE
T ss_pred CCCCCCEEEEEecCCCCCCCCCeeEEEeCCC----CEEEecHHHEEE
Confidence 4789999999987652 23445556656556 899999887653
No 163
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=27.42 E-value=1.1e+02 Score=32.57 Aligned_cols=58 Identities=12% Similarity=-0.017 Sum_probs=43.6
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcC
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLD 627 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~d 627 (841)
.+..+.+.+++++|+..++..+... +.. ..-+..++..+.++|++++|+...++++.-
T Consensus 45 la~~~~~~g~~~~A~~~~~~al~~~-p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 102 (514)
T 2gw1_A 45 LSACYVSVGDLKKVVEMSTKALELK-PDY--SKVLLRRASANEGLGKFADAMFDLSVLSLN 102 (514)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccC-hHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3467778999999999999887622 211 123566777788999999999999988754
No 164
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=26.92 E-value=1.1e+02 Score=32.34 Aligned_cols=59 Identities=12% Similarity=-0.060 Sum_probs=38.3
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSW 629 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~ 629 (841)
+..+-+.++|++|+.+|+..+...+.. ...+..++..+.++|++++|+...++++. +|.
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 92 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGDPDN---YIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD 92 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 356667788888888888776521111 22355556666778888888888887764 444
No 165
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=26.79 E-value=91 Score=37.11 Aligned_cols=60 Identities=13% Similarity=-0.003 Sum_probs=44.1
Q ss_pred HHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 568 ISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
+..+.+.+++++|++.|+..+.-.+-. ..-|..|+..+..+|++++|++..+++++ +|..
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~ 144 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAF---ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDF 144 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 367888999999999998877521111 12356677778889999999999988874 6654
No 166
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=26.48 E-value=74 Score=32.74 Aligned_cols=66 Identities=15% Similarity=0.085 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHhcC---CCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 561 SKVVLLGISFLEREQRFNDAINLLRRLLSC---FTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 561 ~ril~~~~~~LER~k~~~~A~~ll~~Ll~~---~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
..+....+..+.+.+++++|+..|+..+.. .........-+..++..+.++|++++|....++++.
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444557888899999999999877641 110111122344566667789999999998888764
No 167
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=26.46 E-value=77 Score=30.36 Aligned_cols=65 Identities=9% Similarity=0.028 Sum_probs=43.8
Q ss_pred HHHHHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHH---------------HHHhhhhcCCchHHHHHHHhhhc-
Q 037957 563 VVLLGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLR---------------LSIDLEHMGCPSESLSVAEGGLL- 626 (841)
Q Consensus 563 il~~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~R---------------Lal~Lehl~~~~eAl~l~e~~l~- 626 (841)
++.+|.. +-+.++|++|+..|+..+...+ . .-..|+.+ ++..+..+|++++|+...++++.
T Consensus 7 ~~~~g~~-~~~~g~~~~A~~~~~~al~~~p-~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 7 MLQKVSA-AIEAGQNGQAVSYFRQTIALNI-D-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHH-HHHTTCHHHHHHHHHHHHHHCH-H-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHCCCHHHHHHHHHHHHHhCC-C-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3455643 4458999999999998875211 1 11123331 66667889999999999999874
Q ss_pred Cccc
Q 037957 627 DSWV 630 (841)
Q Consensus 627 dP~~ 630 (841)
+|..
T Consensus 84 ~p~~ 87 (208)
T 3urz_A 84 APNN 87 (208)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 6664
No 168
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=25.74 E-value=4.4e+02 Score=30.02 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcC--CchHHHHHHHhhh-cCcc
Q 037957 577 FNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMG--CPSESLSVAEGGL-LDSW 629 (841)
Q Consensus 577 ~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~--~~~eAl~l~e~~l-~dP~ 629 (841)
+++|++.+...+... +. --..|+.|-- .+++++ +.++|++.+++++ .||.
T Consensus 89 ~~~eL~~~~~~l~~~-pK-~y~aW~hR~w-~l~~l~~~~~~~el~~~~k~l~~d~~ 141 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PK-SYGTWHHRCW-LLSRLPEPNWARELELCARFLEADER 141 (567)
T ss_dssp HHHHHHHHHHHHHHC-TT-CHHHHHHHHH-HHHTCSSCCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhC-CC-CHHHHHHHHH-HHHHcccccHHHHHHHHHHHHhhccc
Confidence 667777766665411 11 1134666642 245666 3366777666665 3443
No 169
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=24.90 E-value=1.4e+02 Score=32.31 Aligned_cols=60 Identities=17% Similarity=-0.027 Sum_probs=40.7
Q ss_pred HHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Ccc
Q 037957 567 GISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSW 629 (841)
Q Consensus 567 ~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~ 629 (841)
.+..+.+.+++++|+..|+..+...... ..-+..++..+.++|++++|+..+++++. +|.
T Consensus 316 l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~ 376 (537)
T 3fp2_A 316 RGQMYFILQDYKNAKEDFQKAQSLNPEN---VYPYIQLACLLYKQGKFTESEAFFNETKLKFPT 376 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3456777888999988888876522111 12355566667788888888888888764 344
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=24.66 E-value=72 Score=35.18 Aligned_cols=62 Identities=11% Similarity=-0.012 Sum_probs=43.3
Q ss_pred HHHhhhhchHHHHHHHHHHhcC-CCCCC-----------ccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 569 SFLEREQRFNDAINLLRRLLSC-FTCDS-----------RRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~~-~~~~~-----------rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
..+-+.++|++|+..|+..+.. ..... .+..-|..++..+.++|++++|+..+++++. +|..
T Consensus 276 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~ 350 (457)
T 1kt0_A 276 TVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSAN 350 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Confidence 4666789999999999987752 11110 0012355667777899999999999999874 5554
No 171
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=24.55 E-value=1.5e+02 Score=31.69 Aligned_cols=58 Identities=19% Similarity=0.180 Sum_probs=45.4
Q ss_pred HHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhh-cCccc
Q 037957 569 SFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL-LDSWV 630 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l-~dP~~ 630 (841)
..+-+.|+|++|+..|+..+... +. ...+..++..+.++|++++|+..+++++ .+|..
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~-p~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 72 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK-ED---PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDY 72 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC-CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCC
T ss_pred HHHHHhccHHHHHHHHHHHHhcC-cc---HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHH
Confidence 56677899999999999988633 21 3457777777889999999999999987 45654
No 172
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=24.43 E-value=1.1e+02 Score=34.12 Aligned_cols=63 Identities=13% Similarity=-0.026 Sum_probs=45.7
Q ss_pred HHHHHHHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhc---CCchHHHHHHHhhhc-Cccc
Q 037957 565 LLGISFLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHM---GCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 565 ~~~~~~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl---~~~~eAl~l~e~~l~-dP~~ 630 (841)
...+..+.+.+++++|++.|+..+.... . . ...+..++..+.++ |+.++|.+..++++. +|..
T Consensus 95 ~~la~~~~~~g~~~~A~~~~~~al~~~p-~-~-~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 95 LWLGHALEDAGQAEAAAAAYTRAHQLLP-E-E-PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-T-C-HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-C-C-HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 3345788899999999999998876221 1 1 22355667667788 999999999998874 4554
No 173
>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
Probab=24.42 E-value=1.1e+02 Score=26.05 Aligned_cols=42 Identities=29% Similarity=0.453 Sum_probs=30.2
Q ss_pred ccCCCCeEEEEeCCCCCCCCCceEEEecCCCccccccccccchhhhcc
Q 037957 171 EIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSEYLS 218 (841)
Q Consensus 171 ~~~~ge~v~L~REP~N~~D~nAI~V~~~~g~~~~~lGyipr~~a~~la 218 (841)
.++.||.|.+..++++ |.+=..+.+.+| +.||+|..+...+.
T Consensus 35 s~~~Gd~i~v~~~~~~--~~~Ww~g~~~~g----~~G~~P~~yv~~~~ 76 (91)
T 1wx6_A 35 NFEKGETMEVIEKPEN--DPEWWKCKNARG----QVGLVPKNYVVVLS 76 (91)
T ss_dssp CCCTTCEEEEEECCSS--CTTEEEEECTTC----CEEEEEGGGEEEEE
T ss_pred cCCCCCEEEEEECCCC--CCCcEEEEeCCC----CEEEEchHHEEECC
Confidence 5889999999998533 344455555555 89999998776554
No 174
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=24.31 E-value=62 Score=35.82 Aligned_cols=60 Identities=13% Similarity=-0.078 Sum_probs=44.9
Q ss_pred HHHHHhhhhch-HHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhcC-cc
Q 037957 567 GISFLEREQRF-NDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLLD-SW 629 (841)
Q Consensus 567 ~~~~LER~k~~-~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~d-P~ 629 (841)
.+..+.+.++| ++|++.|+..+...+.. ..-|..++..+..+|++++|....++++.- |.
T Consensus 108 lg~~~~~~g~~~~~A~~~~~~al~~~p~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 169 (474)
T 4abn_A 108 KGKALNVTPDYSPEAEVLLSKAVKLEPEL---VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN 169 (474)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHhccccHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 34677889999 99999999887622111 223667777788899999999999998754 44
No 175
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=24.02 E-value=1.5e+02 Score=29.69 Aligned_cols=64 Identities=9% Similarity=0.058 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHhcC---CCCCCccchhHHHHHHhhhhcCCchHH-HHHHHhhh
Q 037957 562 KVVLLGISFLEREQRFNDAINLLRRLLSC---FTCDSRRGYWTLRLSIDLEHMGCPSES-LSVAEGGL 625 (841)
Q Consensus 562 ril~~~~~~LER~k~~~~A~~ll~~Ll~~---~~~~~rRG~W~~RLal~Lehl~~~~eA-l~l~e~~l 625 (841)
.+....+..+.+.++|++|+..++..+.- .......+.-+..++..+..+|++++| ....++++
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 34444456888999999999999876641 111111244466677777899999999 66555553
No 176
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=23.84 E-value=1.5e+02 Score=32.55 Aligned_cols=58 Identities=12% Similarity=0.044 Sum_probs=32.3
Q ss_pred HHHHhhhhchHHHHHHHHHHhcC----CCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhh
Q 037957 568 ISFLEREQRFNDAINLLRRLLSC----FTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL 625 (841)
Q Consensus 568 ~~~LER~k~~~~A~~ll~~Ll~~----~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l 625 (841)
+..+.+.|++++|+++|+..+.. ...+.....-|..++..+.++|+.++|....++++
T Consensus 482 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 482 GVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 35566677777777777766542 11111111223444444566777777777777665
No 177
>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}
Probab=23.62 E-value=43 Score=26.87 Aligned_cols=39 Identities=21% Similarity=0.324 Sum_probs=27.8
Q ss_pred ccCCCCeEEEEeCCCCCCCCCceEEEecCCCccccccccccchhhhc
Q 037957 171 EIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSEYL 217 (841)
Q Consensus 171 ~~~~ge~v~L~REP~N~~D~nAI~V~~~~g~~~~~lGyipr~~a~~l 217 (841)
.++.||.|.+....+ .+=-.+.+.+| +.|++|..+.+.|
T Consensus 22 s~~~Gd~i~v~~~~~----~~Ww~g~~~~G----~~G~fP~nyVe~i 60 (60)
T 2lx7_A 22 RFAAGELITLLQVPD----GGWWEGEKEDG----LRGWFPASYVQLL 60 (60)
T ss_dssp CCCTTCEEEBSCCCT----TSCEEEECTTS----CEEEECGGGEEEC
T ss_pred cCCCCCEEEEeEecC----CCeEEEEeCCC----CEEEEcHHHEEEC
Confidence 588999999886543 34455555556 7899999886643
No 178
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=23.50 E-value=86 Score=34.65 Aligned_cols=56 Identities=13% Similarity=-0.093 Sum_probs=40.7
Q ss_pred hchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhh-cCccc
Q 037957 575 QRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGL-LDSWV 630 (841)
Q Consensus 575 k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l-~dP~~ 630 (841)
++|++|+..|+..+...+....-...|..++..+..+|++++|+...++++ .+|..
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 291 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW 291 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 889999999998876211000123456777877889999999999999886 46665
No 179
>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A
Probab=23.46 E-value=62 Score=24.82 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=26.7
Q ss_pred ccCCCCeEEEEeCCCCCCCCCceEEEecCCCccccccccccchhh
Q 037957 171 EIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSE 215 (841)
Q Consensus 171 ~~~~ge~v~L~REP~N~~D~nAI~V~~~~g~~~~~lGyipr~~a~ 215 (841)
.++.||.|.+..+.+ .+=..+.+.+| +.|++|....+
T Consensus 19 s~~~Gd~i~v~~~~~----~~Ww~g~~~~g----~~G~~P~~yv~ 55 (57)
T 1cka_A 19 PFKKGDILRIRDKPE----EQWWNAEDSEG----KRGMIPVPYVE 55 (57)
T ss_dssp CBCTTCEEEEEECSS----SSEEEEECTTS----CEEEEEGGGEE
T ss_pred CCCCCCEEEEEEecC----CCcEEEEeCCC----CEEEEeHHHEE
Confidence 578999999998754 23345555555 89999988654
No 180
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=23.31 E-value=1.4e+02 Score=33.84 Aligned_cols=58 Identities=16% Similarity=0.009 Sum_probs=39.2
Q ss_pred HHHhhhhchHHHHHHHHHHhc---CCCCCCc--cchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 569 SFLEREQRFNDAINLLRRLLS---CFTCDSR--RGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 569 ~~LER~k~~~~A~~ll~~Ll~---~~~~~~r--RG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
..+..+++|++|+.+|+..|. +.+.+.. -..-+.-|+..+..+|++++|..+++++|.
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 379 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD 379 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456788999999999988876 2222211 112234455556688999999998887653
No 181
>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}
Probab=23.24 E-value=63 Score=26.30 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=30.0
Q ss_pred ccCCCCeEEEEeCCCCCCCCCceEEEecCCCccccccccccchhhhcccc
Q 037957 171 EIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSEYLSPL 220 (841)
Q Consensus 171 ~~~~ge~v~L~REP~N~~D~nAI~V~~~~g~~~~~lGyipr~~a~~la~l 220 (841)
.++.||.|.+..+ |.+=..+.+.+| +.|++|..+...+.++
T Consensus 25 s~~~Gd~i~v~~~-----~~~Ww~g~~~~g----~~G~~P~~yv~~~~~~ 65 (72)
T 2jw4_A 25 DIKKNERLWLLDD-----SKSWWRVRNSMN----KTGFVPSNYVERKNSA 65 (72)
T ss_dssp CCCTTCEEEEEEC-----SSSSEEEECTTS----CEEEECTTSCEECCCC
T ss_pred cCCCCCEEEEEEC-----CCCEEEEEECCC----CEEEEEhhHEEEcCCC
Confidence 5889999999986 234455655555 8999999887766543
No 182
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=22.82 E-value=1.2e+02 Score=30.60 Aligned_cols=65 Identities=12% Similarity=0.023 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHhc--CCCCCCcc-c-hhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 562 KVVLLGISFLEREQRFNDAINLLRRLLS--CFTCDSRR-G-YWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 562 ril~~~~~~LER~k~~~~A~~ll~~Ll~--~~~~~~rR-G-~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
.+....+..+...++|++|+..|+..+. ...+.... . .=+.-++..+..+|++++|+...++++.
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~ 224 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444445678889999999999988763 11111110 0 1234456667789999999999888864
No 183
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=22.60 E-value=91 Score=29.07 Aligned_cols=37 Identities=24% Similarity=0.260 Sum_probs=29.0
Q ss_pred HHHHHhhcCHHHHHHHHHhhhccC-CCCchHHHHHHHHh
Q 037957 380 IKDICNLLTVSELREISCVLQNCH-RGSRKQKVIASLLC 417 (841)
Q Consensus 380 ~~ell~lLtk~EL~~l~~~~~~~~-~~~~K~~Li~~L~~ 417 (841)
++++ .-++..||+++|+.+.+.. ...+|++|+..++.
T Consensus 3 ~~eL-k~~~~~eL~eiAk~LgI~~~s~mrKqeLI~~IL~ 40 (130)
T 1a62_A 3 LTEL-KNTPVSELITLGENMGLENLARMRKQDIIFAILK 40 (130)
T ss_dssp HHHH-HTSCHHHHHHHHHTTTCCCCTTSCHHHHHHHHHH
T ss_pred hHHH-hhCCHHHHHHHHHHcCCCCccccCHHHHHHHHHH
Confidence 4454 7889999999999988643 34589998888775
No 184
>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.46 E-value=68 Score=25.73 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=28.5
Q ss_pred ccCCCCeEEEEeCCCCCCCCCceEEEecCCCccccccccccchhhhcc
Q 037957 171 EIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSEYLS 218 (841)
Q Consensus 171 ~~~~ge~v~L~REP~N~~D~nAI~V~~~~g~~~~~lGyipr~~a~~la 218 (841)
.++.||.|.+..+ |.+=..+.+.+| +.|++|..+...+.
T Consensus 25 s~~~Gd~i~v~~~-----~~~Ww~~~~~~g----~~G~~P~~yv~~~~ 63 (68)
T 1wxb_A 25 SVLKDEVLEVLED-----GRQWWKLRSRSG----QAGYVPCNILGEAS 63 (68)
T ss_dssp CBCTTCEEEEEEC-----SSSEEEEECTTS----CEEEEETTTCCBCC
T ss_pred CCCCCCEEEEEEc-----CCCEEEEEECCC----CEEEEEHHHeEECC
Confidence 5789999999986 234455555555 89999998776553
No 185
>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A
Probab=22.38 E-value=1e+02 Score=24.76 Aligned_cols=42 Identities=29% Similarity=0.453 Sum_probs=29.7
Q ss_pred ccCCCCeEEEEeCCCCCCCCCceEEEecCCCccccccccccchhhhcc
Q 037957 171 EIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSEYLS 218 (841)
Q Consensus 171 ~~~~ge~v~L~REP~N~~D~nAI~V~~~~g~~~~~lGyipr~~a~~la 218 (841)
.+..||.|.+..++++ |.+=..+.+.+| +.|++|..+...+.
T Consensus 24 s~~~Gd~i~v~~~~~~--~~~Ww~g~~~~g----~~G~~P~~yv~~~~ 65 (71)
T 1u5s_A 24 NFEKGETMEVIEKPEN--DPEWWKCKNARG----QVGLVPKNYVVVLS 65 (71)
T ss_dssp CCCSSCCEEEEECCCT--TTCEEEEEETTT----EEEEEETTSEEECC
T ss_pred cCCCCCEEEEEECCCC--CCCCEEEEeCCC----CEEEEeHHHEEECC
Confidence 5789999999998532 333345545555 89999998876553
No 186
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=21.34 E-value=1.2e+02 Score=31.78 Aligned_cols=64 Identities=17% Similarity=0.059 Sum_probs=43.5
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHhcC---CCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 562 KVVLLGISFLEREQRFNDAINLLRRLLSC---FTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 562 ril~~~~~~LER~k~~~~A~~ll~~Ll~~---~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
.+....+..+.+.+++++|+..|+..+.- .-.+.. ..-+..++..+.++|++++|....++++.
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444446778889999999999877651 011111 23355566667889999999999888865
No 187
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=21.29 E-value=20 Score=34.59 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=0.0
Q ss_pred HhhcCHHHHHHHHHhhhccCCCCchHHHHHHHHhh
Q 037957 384 CNLLTVSELREISCVLQNCHRGSRKQKVIASLLCF 418 (841)
Q Consensus 384 l~lLtk~EL~~l~~~~~~~~~~~~K~~Li~~L~~~ 418 (841)
+.-||+++|+++++..... .+.+|++||+.|...
T Consensus 115 l~klTV~~Lk~~l~~~gl~-~~GkKaeLieRi~~~ 148 (151)
T 1jjr_A 115 LGKFTVPMLKEACRAYGLK-SGLKKQELLEALTKH 148 (151)
T ss_dssp -----------------------------------
T ss_pred cccccHHHHHHHHHHcCCC-CCCcHHHHHHHHHHH
Confidence 5668999999999887644 345899999998653
No 188
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=21.27 E-value=1.4e+02 Score=31.18 Aligned_cols=64 Identities=9% Similarity=0.042 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHhcC----CCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc
Q 037957 562 KVVLLGISFLEREQRFNDAINLLRRLLSC----FTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL 626 (841)
Q Consensus 562 ril~~~~~~LER~k~~~~A~~ll~~Ll~~----~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~ 626 (841)
.+....+..+.+.+++++|+..|+..+.- ...+ ....-+..++..+.++|++++|....++++.
T Consensus 225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP-SLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444456788899999999998877651 1101 1133355666667788999999998888765
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=21.05 E-value=99 Score=34.39 Aligned_cols=58 Identities=12% Similarity=0.125 Sum_probs=42.1
Q ss_pred HHhhhhchHHHHHHHHHHhcCCCCCCccchhHHHHHHhhhhcCCchHHHHHHHhhhc-Cccc
Q 037957 570 FLEREQRFNDAINLLRRLLSCFTCDSRRGYWTLRLSIDLEHMGCPSESLSVAEGGLL-DSWV 630 (841)
Q Consensus 570 ~LER~k~~~~A~~ll~~Ll~~~~~~~rRG~W~~RLal~Lehl~~~~eAl~l~e~~l~-dP~~ 630 (841)
.+.+.++|++|++.|+..+...... ..-|..++..+..+|++++|++.++++++ +|..
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 73 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKY 73 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 4456889999999999887622111 22356667777899999999999999875 4543
No 190
>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}
Probab=20.99 E-value=1.3e+02 Score=23.88 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=29.0
Q ss_pred ccCCCCeEEEEeCCCCCCCCCceEEEecCCCccccccccccchhhhcc
Q 037957 171 EIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSEYLS 218 (841)
Q Consensus 171 ~~~~ge~v~L~REP~N~~D~nAI~V~~~~g~~~~~lGyipr~~a~~la 218 (841)
.+..||.|.+..+ |.+=..+.+.+| +.|++|......+.
T Consensus 25 s~~~Gd~i~v~~~-----~~~Ww~~~~~~g----~~G~~P~~yv~~~~ 63 (68)
T 1wxt_A 25 TVVQGEKLEVLDH-----SKRWWLVKNEAG----RSGYIPSNILEPLS 63 (68)
T ss_dssp CBCTTCEEEEEEC-----SSSEEEEECTTS----CEEEEEGGGEECCC
T ss_pred CCCCCCEEEEEEc-----CCCEEEEEECCC----CEEEEEhHHcEECC
Confidence 6889999999988 234456655555 89999998776553
No 191
>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1
Probab=20.51 E-value=79 Score=25.19 Aligned_cols=39 Identities=10% Similarity=0.129 Sum_probs=29.4
Q ss_pred ccCCCCeEEEEeCCCCCCCCCceEEEecCCCccccccccccchhhhc
Q 037957 171 EIKIGAHISLSRDPNNVKDPNAIKVFSADSGCCKVLGYLPKELSEYL 217 (841)
Q Consensus 171 ~~~~ge~v~L~REP~N~~D~nAI~V~~~~g~~~~~lGyipr~~a~~l 217 (841)
.++.|+.|.+....+ .+=..+.+.+| +.|++|......+
T Consensus 20 s~~~Gd~i~v~~~~~----~~Ww~g~~~~g----~~G~~P~~yv~~~ 58 (67)
T 1gl5_A 20 RLERGQEYIILEKND----LHWWRARDKYG----SEGYIPSNYVTGK 58 (67)
T ss_dssp CBCTTCEEEEEECSS----SSEEEEECSSS----CEEEEETTSEESS
T ss_pred cCCcCCEEEEEEccC----CCcEEEEECCC----CEEEEEhHhEEEc
Confidence 578999999999843 34455555556 8999999887766
Done!