BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037958
         (247 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QHO|A Chain A, Crystal Analysis Of The Complex Structure,
           Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
           Horikoshii
 pdb|3QHO|B Chain B, Crystal Analysis Of The Complex Structure,
           Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
           Horikoshii
 pdb|3QHO|C Chain C, Crystal Analysis Of The Complex Structure,
           Y299f-Cellotetraose, Of Endocellulase From Pyrococcus
           Horikoshii
          Length = 458

 Score = 29.6 bits (65), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 21/73 (28%)

Query: 164 PFWLALFVEGTRFTQAK----------------LLAAQEYAASTGLPIPRNVLIPRTKGF 207
           P WL +FVEGT+FT  K                L+A ++Y  +    +PRN L+     F
Sbjct: 245 PHWL-IFVEGTQFTNPKTDSSYKWGYNAWWGGNLMAVKDYPVN----LPRNKLVYSPHVF 299

Query: 208 VSAVSHMRSFVPA 220
              V +   F PA
Sbjct: 300 GPDVYNQPYFGPA 312


>pdb|2Q0T|A Chain A, Crystal Structure Of A Putative Gamma-Carboxymuconolactone
           Decarboxylase Subunit (Bxe_b0980) From Burkholderia
           Xenovorans Lb400 At 1.70 A Resolution
 pdb|2Q0T|B Chain B, Crystal Structure Of A Putative Gamma-Carboxymuconolactone
           Decarboxylase Subunit (Bxe_b0980) From Burkholderia
           Xenovorans Lb400 At 1.70 A Resolution
 pdb|2Q0T|C Chain C, Crystal Structure Of A Putative Gamma-Carboxymuconolactone
           Decarboxylase Subunit (Bxe_b0980) From Burkholderia
           Xenovorans Lb400 At 1.70 A Resolution
          Length = 263

 Score = 28.5 bits (62), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 147 DESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLPIPRNVLIPRTKG 206
           D S L+  L RL     P W +L     RF  A       Y    G+P  RN L  +T+ 
Sbjct: 10  DPSRLRDELVRLHGKASPEWDSLVRLDPRFVDA-------YLKFAGVPQRRNHLDDKTRA 62

Query: 207 FVS 209
           F++
Sbjct: 63  FIA 65


>pdb|3DR5|A Chain A, Crystal Structure Of The Q8nrd3_corgl Protein From
           Corynebacterium Glutamicum. Northeast Structural
           Genomics Consortium Target Cgr117
          Length = 221

 Score = 27.3 bits (59), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 166 WLALFVEGTRFTQAKLLAAQEYAASTGLPIP 196
           +L  +VE T  T A +  A+E AA  GLP P
Sbjct: 7   YLRTYVESTTETDAAVARAREDAAEFGLPAP 37


>pdb|2DHB|B Chain B, Three Dimensional Fourier Synthesis Of Horse
           Deoxyhaemoglobin At 2.8 Angstroms Resolution
          Length = 146

 Score = 26.9 bits (58), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 13/23 (56%), Positives = 16/23 (69%)

Query: 70  KLFVDRETYRLMGKEHALVVSNH 92
           KL VD E +RL+G   ALVV+ H
Sbjct: 95  KLHVDPENFRLLGNVLALVVARH 117


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.137    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,329,560
Number of Sequences: 62578
Number of extensions: 229144
Number of successful extensions: 578
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 6
length of query: 247
length of database: 14,973,337
effective HSP length: 96
effective length of query: 151
effective length of database: 8,965,849
effective search space: 1353843199
effective search space used: 1353843199
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)