Query 037958
Match_columns 247
No_of_seqs 202 out of 1968
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 10:04:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037958.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037958hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iuq_A Glycerol-3-phosphate ac 99.7 1.1E-18 3.7E-23 150.3 2.9 118 81-201 127-276 (367)
2 2lnd_A De novo designed protei 44.7 44 0.0015 22.0 4.8 43 148-194 37-79 (112)
3 3p8k_A Hydrolase, carbon-nitro 40.3 39 0.0013 27.4 5.1 47 148-196 39-99 (281)
4 2w1v_A Nitrilase-2, nitrilase 33.9 51 0.0017 26.5 4.8 48 148-197 21-82 (276)
5 3ivz_A Nitrilase; alpha-beta s 32.5 51 0.0018 26.2 4.5 47 148-196 20-84 (262)
6 2wqp_A Polysialic acid capsule 31.4 42 0.0014 28.6 3.9 78 114-195 127-210 (349)
7 3hkx_A Amidase; alpha-beta-BET 29.4 56 0.0019 26.5 4.3 47 148-196 39-100 (283)
8 1f89_A 32.5 kDa protein YLR351 29.1 54 0.0018 26.5 4.2 48 148-197 29-96 (291)
9 1ems_A Nitfhit, NIT-fragIle hi 27.7 68 0.0023 27.8 4.8 49 148-198 32-95 (440)
10 3g8r_A Probable spore coat pol 26.4 60 0.002 27.7 4.0 50 114-164 114-163 (350)
11 2xw6_A MGS, methylglyoxal synt 25.9 79 0.0027 22.9 4.0 60 153-218 65-126 (134)
12 2e11_A Hydrolase; dimethylarse 24.8 75 0.0026 25.2 4.2 46 149-197 23-81 (266)
13 1uf5_A N-carbamyl-D-amino acid 23.0 70 0.0024 25.9 3.8 26 148-175 24-49 (303)
14 1vs1_A 3-deoxy-7-phosphoheptul 22.0 1.9E+02 0.0064 23.6 6.1 80 114-195 124-210 (276)
15 2yvq_A Carbamoyl-phosphate syn 20.7 1.4E+02 0.0047 21.5 4.6 45 153-198 87-131 (143)
No 1
>1iuq_A Glycerol-3-phosphate acyltransferase; open twisted alpha/beta, four helix bundle; 1.55A {Cucurbita moschata} SCOP: c.112.1.1 PDB: 1k30_A
Probab=99.72 E-value=1.1e-18 Score=150.29 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=90.3
Q ss_pred cCCccEEEEeCCchhhHHHHHHHHHHhcC--CccceeeeecccCCccchh---hHHHHhhccccc----c------CCch
Q 037958 81 MGKEHALVVSNHKSDIDWLVGWVLAQRSG--CLGSTLAVMKKSSKFLPVI---GWSMWFSEYLFL----E------RNWA 145 (247)
Q Consensus 81 ~~~~~~iivsNH~S~~D~~~l~~~~~~~~--~~~~~~~v~k~~l~~~P~~---g~~~~~~g~i~i----~------R~~~ 145 (247)
.+++++|++|||||.+|+.++..++.+.+ .-.++.||+|+++.+.|+. +++ +..+|++. + |++.
T Consensus 127 ~~~~~vIfisNHQS~~D~~vi~~~l~~~~~~l~~~~~fVAk~eL~~~Pl~~Pfs~g-~~l~cI~~kk~id~~p~l~r~~~ 205 (367)
T 1iuq_A 127 QQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIG-RNLICVYSKKHMFDIPELTETKR 205 (367)
T ss_dssp HTTCEEEEEECCCCTTHHHHHHHHHTTTCHHHHHHCEEEECTHHHHCTTTHHHHHT-SEEEECCCGGGTTSSGGGHHHHH
T ss_pred cCCCcEEEEECCccchhHHHHHHHHhhcccccccceEEEeehhhhcCccccchhhh-hheeeEEecccCCCcchhhhhhh
Confidence 45689999999999999999999886411 0015799999999977766 444 44677775 4 4433
Q ss_pred h-hHHHHHHHHHHhhcCCCCeEEEEeeCCcccChh----hH------HHHH----HHHHHcCCC--CCCeeec
Q 037958 146 K-DESTLKSGLQRLRDYPQPFWLALFVEGTRFTQA----KL------LAAQ----EYAASTGLP--IPRNVLI 201 (247)
Q Consensus 146 ~-~~~~i~~~~~~l~~~~~~~~l~IFPEGTr~~~~----~~------~~~~----~~A~~~~~p--i~~~~l~ 201 (247)
+ +.++++++.+.+++++ .+++|||||||++++ .+ .|++ ++|.++|+| |+|..+.
T Consensus 206 r~n~ksl~~~~~~Lk~GG--~sI~IFPEGTRsR~~~~~g~l~~~~Fk~gs~~~~~~LA~ksg~P~hIvPvaI~ 276 (367)
T 1iuq_A 206 KANTRSLKEMALLLRGGS--QLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALL 276 (367)
T ss_dssp HHHHHHHHHHHHHHHHCC--CEEEECTTCSCCCBCTTTCCBCCCCCCHHHHHHHHHHHHTSSSCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCC--eEEEEeCCCCCCCCCCCCCccccccccchhhhHHHHHHHHcCCCceEEEEEEE
Confidence 2 4789999999999854 369999999999963 32 2566 999999999 9998764
No 2
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=44.72 E-value=44 Score=21.96 Aligned_cols=43 Identities=21% Similarity=0.413 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEeeCCcccChhhHHHHHHHHHHcCCC
Q 037958 148 ESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLP 194 (247)
Q Consensus 148 ~~~i~~~~~~l~~~~~~~~l~IFPEGTr~~~~~~~~~~~~A~~~~~p 194 (247)
.+-+++.++.+++.+.+ +++|-.|..-+ ....++.-|++.|+.
T Consensus 37 sqdirdiiksmkdngkp--lvvfvngasqn--dvnefqneakkegvs 79 (112)
T 2lnd_A 37 SQDIRDIIKSMKDNGKP--LVVFVNGASQN--DVNEFQNEAKKEGVS 79 (112)
T ss_dssp HHHHHHHHHHHTTCCSC--EEEEECSCCHH--HHHHHHHHHHHHTCE
T ss_pred hhhHHHHHHHHHhcCCe--EEEEecCcccc--cHHHHHHHHHhcCcc
Confidence 44567777888887666 99999998643 334666777777753
No 3
>3p8k_A Hydrolase, carbon-nitrogen family; HET: PGE; 1.70A {Staphylococcus aureus subsp}
Probab=40.34 E-value=39 Score=27.38 Aligned_cols=47 Identities=9% Similarity=-0.017 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEeeCCcccC--------------hhhHHHHHHHHHHcCCCCC
Q 037958 148 ESTLKSGLQRLRDYPQPFWLALFVEGTRFT--------------QAKLLAAQEYAASTGLPIP 196 (247)
Q Consensus 148 ~~~i~~~~~~l~~~~~~~~l~IFPEGTr~~--------------~~~~~~~~~~A~~~~~pi~ 196 (247)
.+.+.+.+++..+.+ .-+++|||-...- ........++|++.++.++
T Consensus 39 l~~~~~~i~~A~~~g--adlvvfPE~~l~gy~~~~~~~~a~~~~~~~~~~l~~la~~~~i~iv 99 (281)
T 3p8k_A 39 ETQITQWFEKNMNAE--VDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIV 99 (281)
T ss_dssp HHHHHHHHHHHCCTT--CCEEECCSSTTTTTCGGGHHHHSEETTHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHHHhCC--CcEEEcCCCccCCCChhHHHHhhhccCcHHHHHHHHHHhhCCeEEE
Confidence 445555555554443 3499999975431 1123356778888887765
No 4
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=33.90 E-value=51 Score=26.47 Aligned_cols=48 Identities=8% Similarity=-0.095 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEeeCCcccC--------------hhhHHHHHHHHHHcCCCCCC
Q 037958 148 ESTLKSGLQRLRDYPQPFWLALFVEGTRFT--------------QAKLLAAQEYAASTGLPIPR 197 (247)
Q Consensus 148 ~~~i~~~~~~l~~~~~~~~l~IFPEGTr~~--------------~~~~~~~~~~A~~~~~pi~~ 197 (247)
.+.+.+..++..+.+. -+++|||...+. ........++|++.++.++-
T Consensus 21 ~~~~~~~i~~a~~~ga--dlvv~PE~~~~gy~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~ 82 (276)
T 2w1v_A 21 LTRACSLVREAAKQGA--NIVSLPECFNSPYGTTYFPDYAEKIPGESTQKLSEVAKESSIYLIG 82 (276)
T ss_dssp HHHHHHHHHHHHHTTC--SEEECCTTTTSCCSTTTHHHHCBCSSSHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHHHHHCCC--CEEEcCCCcccCCCHHHHHHHhccCCCHHHHHHHHHHHHcCeEEEe
Confidence 3444444444443333 399999975431 11223456778888877653
No 5
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=32.53 E-value=51 Score=26.24 Aligned_cols=47 Identities=15% Similarity=0.005 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEeeCCccc----Ch--------------hhHHHHHHHHHHcCCCCC
Q 037958 148 ESTLKSGLQRLRDYPQPFWLALFVEGTRF----TQ--------------AKLLAAQEYAASTGLPIP 196 (247)
Q Consensus 148 ~~~i~~~~~~l~~~~~~~~l~IFPEGTr~----~~--------------~~~~~~~~~A~~~~~pi~ 196 (247)
.+.+.+..++..+.+. -+++|||-..+ .+ .......++|++.++.++
T Consensus 20 ~~~~~~~i~~A~~~ga--dlvvfPE~~~~gy~~~~~~~~~~~a~~~~~~~~~~~l~~~a~~~~~~iv 84 (262)
T 3ivz_A 20 YSKAEKLIKEASKQGA--QLVVLPELFDTGYNFETREEVFEIAQKIPEGETTTFLMDVARDTGVYIV 84 (262)
T ss_dssp HHHHHHHHHHHHHTTC--SEEECCTTTTTCSCCSCHHHHHHHCBCTTTSHHHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHHHHHHCCC--CEEEeCCCcccCCCCCCHHHHHHhcCccCCCHHHHHHHHHHHHcCcEEE
Confidence 3444444444444333 39999996443 10 122345677777777665
No 6
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=31.36 E-value=42 Score=28.60 Aligned_cols=78 Identities=15% Similarity=0.203 Sum_probs=56.1
Q ss_pred eeeeecccCCccchhhHHHHhhccccccCCchhhHHHHHHHHHHhhcCCCCeEEEEeeCCcccChhh-----HHHHHHHH
Q 037958 114 TLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAK-----LLAAQEYA 188 (247)
Q Consensus 114 ~~~v~k~~l~~~P~~g~~~~~~g~i~i~R~~~~~~~~i~~~~~~l~~~~~~~~l~IFPEGTr~~~~~-----~~~~~~~A 188 (247)
..=++..++.+.|++..+.+....+.++|+.. +.+.+..+.+.+.+.+.. +++. |+++.-+.. +.....+.
T Consensus 127 ~~KI~S~~~~n~~LL~~va~~gkPviLstGma-t~~Ei~~Ave~i~~~G~~--iiLl-hc~s~Yp~~~~~~nL~ai~~lk 202 (349)
T 2wqp_A 127 AYKIGSGECNNYPLIKLVASFGKPIILSTGMN-SIESIKKSVEIIREAGVP--YALL-HCTNIYPTPYEDVRLGGMNDLS 202 (349)
T ss_dssp CEEECGGGTTCHHHHHHHHTTCSCEEEECTTC-CHHHHHHHHHHHHHHTCC--EEEE-ECCCCSSCCGGGCCTHHHHHHH
T ss_pred EEEECcccccCHHHHHHHHhcCCeEEEECCCC-CHHHHHHHHHHHHHcCCC--EEEE-eccCCCCCChhhcCHHHHHHHH
Confidence 45567889999999999998889999999986 777888888888876653 4443 687774331 23444555
Q ss_pred HHc-CCCC
Q 037958 189 AST-GLPI 195 (247)
Q Consensus 189 ~~~-~~pi 195 (247)
+.. ++||
T Consensus 203 ~~f~~lpV 210 (349)
T 2wqp_A 203 EAFPDAII 210 (349)
T ss_dssp HHCTTSEE
T ss_pred HHCCCCCE
Confidence 555 6766
No 7
>3hkx_A Amidase; alpha-beta-BETA-alpha:alpha-beta-BETA-alpha dimeric sandwich hydrolase; 1.66A {Nesterenkonia SP}
Probab=29.39 E-value=56 Score=26.45 Aligned_cols=47 Identities=15% Similarity=0.088 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEeeCCccc--Chh-------------hHHHHHHHHHHcCCCCC
Q 037958 148 ESTLKSGLQRLRDYPQPFWLALFVEGTRF--TQA-------------KLLAAQEYAASTGLPIP 196 (247)
Q Consensus 148 ~~~i~~~~~~l~~~~~~~~l~IFPEGTr~--~~~-------------~~~~~~~~A~~~~~pi~ 196 (247)
.+.+.+..++..+.+. -+++|||-..+ ..+ ......++|++.++.++
T Consensus 39 ~~~~~~~i~~A~~~ga--dlvvfPE~~l~gy~~~d~~~~~a~~~~~~~~~~l~~~a~~~~i~iv 100 (283)
T 3hkx_A 39 LDLIDDAAARASEQGA--QLLLTPELFGFGYVPSQICAQVSAEQVDAARSRLRGIARDRGIALV 100 (283)
T ss_dssp HHHHHHHHHHHHHTTC--SEEECCTTGGGCSCHHHHHHHCCHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHCCC--CEEEcCCCcccCCChHHHHHHhccccCCHHHHHHHHHHHHhCCEEE
Confidence 3444444444443333 39999996543 111 12245678888776654
No 8
>1f89_A 32.5 kDa protein YLR351C; nitrilase, dimer, structural genomics, four layer sandwich, PSI, protein structure initiative; 2.40A {Saccharomyces cerevisiae} SCOP: d.160.1.1
Probab=29.10 E-value=54 Score=26.50 Aligned_cols=48 Identities=8% Similarity=-0.049 Sum_probs=27.5
Q ss_pred HHHHHHHHHHh--hcCCCCeEEEEeeCCcccC------------------hhhHHHHHHHHHHcCCCCCC
Q 037958 148 ESTLKSGLQRL--RDYPQPFWLALFVEGTRFT------------------QAKLLAAQEYAASTGLPIPR 197 (247)
Q Consensus 148 ~~~i~~~~~~l--~~~~~~~~l~IFPEGTr~~------------------~~~~~~~~~~A~~~~~pi~~ 197 (247)
.+.+.+..++. .+. +.-+++|||...+. ........++|++.++.++-
T Consensus 29 ~~~~~~~i~~a~~~~~--gadlvv~PE~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~iv~ 96 (291)
T 1f89_A 29 LQRAATFIERAMKEQP--DTKLVVLPECFNSPYSTDQFRKYSEVINPKEPSTSVQFLSNLANKFKIILVG 96 (291)
T ss_dssp HHHHHHHHHHHHHHCT--TEEEEECCTTTTSCSCHHHHHHHTTBCCSSSCCHHHHHHHHHHHHSSCEEEC
T ss_pred HHHHHHHHHHHhhccC--CCeEEEcCCCcccCCChHHHHHHhhhhccCCCChHHHHHHHHHHHcCcEEEe
Confidence 34444455444 332 44699999965421 11233456778888877654
No 9
>1ems_A Nitfhit, NIT-fragIle histidine triad fusion protein; WORM, nitrilase, nucleotide-binding protein, cancer; 2.80A {Caenorhabditis elegans} SCOP: d.13.1.1 d.160.1.1
Probab=27.71 E-value=68 Score=27.78 Aligned_cols=49 Identities=12% Similarity=0.053 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEeeCCcccCh---h------------hHHHHHHHHHHcCCCCCCe
Q 037958 148 ESTLKSGLQRLRDYPQPFWLALFVEGTRFTQ---A------------KLLAAQEYAASTGLPIPRN 198 (247)
Q Consensus 148 ~~~i~~~~~~l~~~~~~~~l~IFPEGTr~~~---~------------~~~~~~~~A~~~~~pi~~~ 198 (247)
.+.+.+..++..+.+. -+++|||...... . ......++|++.|+.++--
T Consensus 32 l~~~~~li~~A~~~ga--dlvv~PE~~~~~~~~~~~~~~~a~~~~~~~~~~l~~~A~~~~i~iv~G 95 (440)
T 1ems_A 32 FQAAKNMIERAGEKKC--EMVFLPECFDFIGLNKNEQIDLAMATDCEYMEKYRELARKHNIWLSLG 95 (440)
T ss_dssp HHHHHHHHHHHHHTTC--SEEEECTTCSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHCCC--CEEECCCcccccCcchhHHHHhhccCCCHHHHHHHHHHHHcCeEEEec
Confidence 3444444444444333 3999999765311 0 1123567788888877543
No 10
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=26.38 E-value=60 Score=27.67 Aligned_cols=50 Identities=6% Similarity=-0.039 Sum_probs=41.4
Q ss_pred eeeeecccCCccchhhHHHHhhccccccCCchhhHHHHHHHHHHhhcCCCC
Q 037958 114 TLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQP 164 (247)
Q Consensus 114 ~~~v~k~~l~~~P~~g~~~~~~g~i~i~R~~~~~~~~i~~~~~~l~~~~~~ 164 (247)
..=++..++.+.|++..+.+....+.++|+.. +.+.+..+.+.+.+.+..
T Consensus 114 ~~KI~S~~~~N~pLL~~va~~gKPviLstGms-tl~Ei~~Ave~i~~~g~~ 163 (350)
T 3g8r_A 114 IIKIASCSFTDWPLLERIARSDKPVVASTAGA-RREDIDKVVSFMLHRGKD 163 (350)
T ss_dssp EEEECSSSTTCHHHHHHHHTSCSCEEEECTTC-CHHHHHHHHHHHHTTTCC
T ss_pred EEEECcccccCHHHHHHHHhhCCcEEEECCCC-CHHHHHHHHHHHHHcCCC
Confidence 44567778899999999999899999999985 778888888888877654
No 11
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=25.91 E-value=79 Score=22.87 Aligned_cols=60 Identities=13% Similarity=0.149 Sum_probs=37.5
Q ss_pred HHHHHhhcCCCCeEEEEeeC--CcccChhhHHHHHHHHHHcCCCCCCeeecCCchhHHHHHHHhcCCC
Q 037958 153 SGLQRLRDYPQPFWLALFVE--GTRFTQAKLLAAQEYAASTGLPIPRNVLIPRTKGFVSAVSHMRSFV 218 (247)
Q Consensus 153 ~~~~~l~~~~~~~~l~IFPE--GTr~~~~~~~~~~~~A~~~~~pi~~~~l~Pr~~g~~~~l~~l~~~~ 218 (247)
+..+.+++++-. .++.||+ |.......-....+.|.+.++|++... .+...+++.+...+
T Consensus 65 ~I~d~I~~geId-lVInt~~pl~~~~h~~D~~~IrR~A~~~~IP~~T~l-----atA~a~v~al~~~~ 126 (134)
T 2xw6_A 65 QMGARVAEGRIL-AVIFFRDPLTAQPHEPDVQALLRVCDVHGVPLATNP-----MAAEALIPWLQSLV 126 (134)
T ss_dssp HHHHHHHTTCEE-EEEEECCTTTCCTTSCCSHHHHHHHHHHTCCEECSH-----HHHHHHHHHHHTCT
T ss_pred hHHHHHHCCCcc-EEEEccCcccCCCccchHHHHHHHHHHcCCCeEcCH-----HHHHHHHHHHHHHh
Confidence 455566665432 4666787 744323333456788899999998763 46777777775443
No 12
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=24.78 E-value=75 Score=25.22 Aligned_cols=46 Identities=17% Similarity=-0.000 Sum_probs=25.7
Q ss_pred HHHHHHHHHhhcCCCCeEEEEeeCCcccCh-------------hhHHHHHHHHHHcCCCCCC
Q 037958 149 STLKSGLQRLRDYPQPFWLALFVEGTRFTQ-------------AKLLAAQEYAASTGLPIPR 197 (247)
Q Consensus 149 ~~i~~~~~~l~~~~~~~~l~IFPEGTr~~~-------------~~~~~~~~~A~~~~~pi~~ 197 (247)
+.+.+..++. +. +.-+++|||...... .......++|++.++.++-
T Consensus 23 ~~~~~~i~~a-~~--gadlvv~PE~~~~gy~~~~~~~a~~~~~~~~~~l~~~a~~~~~~iv~ 81 (266)
T 2e11_A 23 DYYGALLEPL-AG--QSDLVILPETFTSGFSNEAIDKAEDMDGPTVAWIRTQAARLGAAITG 81 (266)
T ss_dssp HHHHHHHGGG-TT--TCSEEECCTTTTTCSCSGGGGGCEETTSHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHh-cC--CCCEEECCCCccccCChhHHHhhccCCCHHHHHHHHHHHHhCCEEEE
Confidence 3444444443 32 334999999544211 1223466788888887753
No 13
>1uf5_A N-carbamyl-D-amino acid amidohydrolase; HET: CDT; 1.60A {Agrobacterium SP} SCOP: d.160.1.2 PDB: 1uf4_A* 1uf7_A* 1uf8_A* 1erz_A 1fo6_A 2ggl_A 2ggk_A
Probab=23.01 E-value=70 Score=25.90 Aligned_cols=26 Identities=15% Similarity=-0.000 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhhcCCCCeEEEEeeCCcc
Q 037958 148 ESTLKSGLQRLRDYPQPFWLALFVEGTR 175 (247)
Q Consensus 148 ~~~i~~~~~~l~~~~~~~~l~IFPEGTr 175 (247)
.+.+.+..++..+.+. -+++|||...
T Consensus 24 ~~~~~~~i~~a~~~ga--dlvv~PE~~~ 49 (303)
T 1uf5_A 24 VVRLLDMLTKAASRGA--NFIVFPELAL 49 (303)
T ss_dssp HHHHHHHHHHHHHTTC--SEEECCTTTT
T ss_pred HHHHHHHHHHHHhcCC--CEEEeccccc
Confidence 3444444444433332 3999999644
No 14
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=22.01 E-value=1.9e+02 Score=23.56 Aligned_cols=80 Identities=18% Similarity=0.192 Sum_probs=54.5
Q ss_pred eeeeecccCCccchhhHHHHhhccccccCCchhhHHHHHHHHHHhhcCCCCeEEEEeeC-CcccChh------hHHHHHH
Q 037958 114 TLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFWLALFVE-GTRFTQA------KLLAAQE 186 (247)
Q Consensus 114 ~~~v~k~~l~~~P~~g~~~~~~g~i~i~R~~~~~~~~i~~~~~~l~~~~~~~~l~IFPE-GTr~~~~------~~~~~~~ 186 (247)
..-+...+..+.|++..+.+....+.++++...+...+..+.+.+.+.+++. +++ =| |+++-+. .+.....
T Consensus 124 ~~kIgs~~~~n~~ll~~~a~~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~-i~L-~~Rg~~~yp~y~~~~vdl~~i~~ 201 (276)
T 1vs1_A 124 MLQIGARNMQNFPLLREVGRSGKPVLLKRGFGNTVEELLAAAEYILLEGNWQ-VVL-VERGIRTFEPSTRFTLDVAAVAV 201 (276)
T ss_dssp EEEECGGGTTCHHHHHHHHHHTCCEEEECCTTCCHHHHHHHHHHHHHTTCCC-EEE-EECCBCCSCCSSSSBCBHHHHHH
T ss_pred eEEECcccccCHHHHHHHHccCCeEEEcCCCCCCHHHHHHHHHHHHHcCCCe-EEE-EeCCcCCCCCcCcchhCHHHHHH
Confidence 4566778888888888888888889999987656677778888887766542 433 45 8765322 1333445
Q ss_pred HHHHcCCCC
Q 037958 187 YAASTGLPI 195 (247)
Q Consensus 187 ~A~~~~~pi 195 (247)
+.+..++||
T Consensus 202 lk~~~~lpV 210 (276)
T 1vs1_A 202 LKEATHLPV 210 (276)
T ss_dssp HHHHBSSCE
T ss_pred HHHHhCCCE
Confidence 555568885
No 15
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=20.72 E-value=1.4e+02 Score=21.53 Aligned_cols=45 Identities=16% Similarity=0.110 Sum_probs=28.6
Q ss_pred HHHHHhhcCCCCeEEEEeeCCcccChhhHHHHHHHHHHcCCCCCCe
Q 037958 153 SGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLPIPRN 198 (247)
Q Consensus 153 ~~~~~l~~~~~~~~l~IFPEGTr~~~~~~~~~~~~A~~~~~pi~~~ 198 (247)
+..+.+++++.. .++-+|+|.+.....-....+.|.++++|.+..
T Consensus 87 ~i~d~i~~g~i~-lVInt~~~~~~~~~d~~~iRR~Av~~~IP~~T~ 131 (143)
T 2yvq_A 87 SIRKLIRDGSID-LVINLPNNNTKFVHDNYVIRRTAVDSGIPLLTN 131 (143)
T ss_dssp CHHHHHHTTSCC-EEEECCCCCGGGHHHHHHHHHHHHHTTCCEECS
T ss_pred cHHHHHHCCCce-EEEECCCCCCcCCccHHHHHHHHHHhCCCeEcC
Confidence 345556665543 466678885433222235778899999999765
Done!