RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 037958
(247 letters)
>gnl|CDD|178006 PLN02380, PLN02380, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 376
Score = 492 bits (1269), Expect = e-177
Identities = 206/247 (83%), Positives = 233/247 (94%)
Query: 1 MAIAAAAVIVPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRWVAELLWLELVWI 60
MAI AA VI+PLGLLF +SGL+VNLIQAVCF+ +RPLSK+ YRRINR VAELLWLEL+W+
Sbjct: 1 MAIPAALVILPLGLLFLLSGLIVNLIQAVCFILVRPLSKSLYRRINRAVAELLWLELIWL 60
Query: 61 VDWWAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKK 120
VDWWAGVK++L+ D ET+ LMGKEHALV+SNH+SDIDWLVGW+LAQRSGCLGS LAVMKK
Sbjct: 61 VDWWAGVKVQLYADEETFELMGKEHALVISNHRSDIDWLVGWILAQRSGCLGSALAVMKK 120
Query: 121 SSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAK 180
SSKFLPVIGWSMWFSEY+FLER+WAKDE+TLKSG QRL+D+P+PFWLALFVEGTRFTQAK
Sbjct: 121 SSKFLPVIGWSMWFSEYVFLERSWAKDENTLKSGFQRLKDFPRPFWLALFVEGTRFTQAK 180
Query: 181 LLAAQEYAASTGLPIPRNVLIPRTKGFVSAVSHMRSFVPAIYDVTVAIPKSSPAPTMIRL 240
LLAAQEYAAS GLP+PRNVLIPRTKGFVSAVS+MRSFVPAIYDVTVA+PK PAPTM+R+
Sbjct: 181 LLAAQEYAASRGLPVPRNVLIPRTKGFVSAVSNMRSFVPAIYDVTVAVPKGQPAPTMLRI 240
Query: 241 FKGQSSV 247
F+GQSSV
Sbjct: 241 FRGQSSV 247
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 233 bits (596), Expect = 4e-78
Identities = 86/190 (45%), Positives = 123/190 (64%), Gaps = 3/190 (1%)
Query: 58 VWIVDWWAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAV 117
V++ +W +GVK+ ++ D + KE AL++SNH+S++DWLV W+LA R G LG V
Sbjct: 1 VFLFEWLSGVKVVVYGDEP---KLPKERALIISNHRSEVDWLVLWMLADRFGRLGRLKIV 57
Query: 118 MKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFT 177
+K S K+ P+ GW E++FL+R W KDE T+K L+RL+D P+PFWL +F EGTRFT
Sbjct: 58 LKDSLKYPPLGGWGWQLGEFIFLKRKWEKDEKTIKRQLKRLKDSPEPFWLLIFPEGTRFT 117
Query: 178 QAKLLAAQEYAASTGLPIPRNVLIPRTKGFVSAVSHMRSFVPAIYDVTVAIPKSSPAPTM 237
+ K +QE+A GLP ++VL+PRTKGFV+ + +R V A+YDVT+A P P
Sbjct: 118 EEKKERSQEFAEKNGLPPLKHVLLPRTKGFVAILETLRDAVDAVYDVTIAYPDGKPPSEQ 177
Query: 238 IRLFKGQSSV 247
L G+
Sbjct: 178 RLLLGGKPRE 187
>gnl|CDD|178126 PLN02510, PLN02510, probable 1-acyl-sn-glycerol-3-phosphate
acyltransferase.
Length = 374
Score = 151 bits (383), Expect = 7e-44
Identities = 66/152 (43%), Positives = 95/152 (62%)
Query: 82 GKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLE 141
+E L+++NH++++DW+ W LA R GCLG V+K S LPV GW+ E++ +E
Sbjct: 90 PEERVLLIANHRTEVDWMYLWDLALRKGCLGYIKYVLKSSLMKLPVFGWAFHIFEFIPVE 149
Query: 142 RNWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLPIPRNVLI 201
R W DE ++ L +D P WLALF EGT +T+AK +Q++AA GLPI NVL+
Sbjct: 150 RKWEVDEPNIRQMLSSFKDPRDPLWLALFPEGTDYTEAKCQRSQKFAAEHGLPILNNVLL 209
Query: 202 PRTKGFVSAVSHMRSFVPAIYDVTVAIPKSSP 233
P+TKGFVS + +R + A+YDVT+ P
Sbjct: 210 PKTKGFVSCLQELRCSLDAVYDVTIGYKHRCP 241
>gnl|CDD|214724 smart00563, PlsC, Phosphate acyltransferases. Function in
phospholipid biosynthesis and have either
glycerolphosphate, 1-acylglycerolphosphate, or
2-acylglycerolphosphoethanolamine acyltransferase
activities. Tafazzin, the product of the gene mutated in
patients with Barth syndrome, is a member of this
family.
Length = 118
Score = 80.5 bits (199), Expect = 2e-19
Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 7/123 (5%)
Query: 86 ALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNW- 144
ALVV+NH+S +D LV L R G V KK ++P++GW + +F++R+
Sbjct: 1 ALVVANHQSFLDPLVLSALLPRKL--GRVRFVAKKELFYVPLLGWLLRLLGAIFIDRSNG 58
Query: 145 AKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLPIPRNVLIPRT 204
K + L+ ++ L++ WL +F EGTR KLL ++ AA L ++P
Sbjct: 59 RKARAALREAVELLKE---GEWLLIFPEGTRSRPGKLLPFKKGAARLALE-AGVPIVPVA 114
Query: 205 KGF 207
Sbjct: 115 IRG 117
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 72.3 bits (177), Expect = 4e-15
Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 14/165 (8%)
Query: 36 PLSKNTYRRINRWVAELLWLELVWIVDWWAGVKIKLFVDRETYRLMGKEHALVVSNHKSD 95
PL+ R+ R V LV ++ G+++++ L ALVV+NH+S
Sbjct: 19 PLALIALFRLRRPVLRRWLRFLVLLLLLLFGLRVEV---EGLENLPKGGPALVVANHQSF 75
Query: 96 IDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGL 155
+D L+ + R G V KK +P++GW + + ++R DE TL++ +
Sbjct: 76 LDPLLLSLALPRRG---PVRFVAKKELFKVPLLGWLLRLLGAIPVDRENPDDE-TLRAAV 131
Query: 156 QRLRDYPQPFWLALFVEGTRFTQAKLLAAQE-----YAASTGLPI 195
RL+ L +F EGTR + L + A G+PI
Sbjct: 132 ARLKA--GGRSLVIFPEGTRSRGGEELLPFKRGAARLALEAGVPI 174
>gnl|CDD|216567 pfam01553, Acyltransferase, Acyltransferase. This family contains
acyltransferases involved in phospholipid biosynthesis
and other proteins of unknown function. This family also
includes tafazzin, the Barth syndrome gene.
Length = 131
Score = 56.1 bits (136), Expect = 3e-10
Identities = 36/114 (31%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 86 ALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWA 145
A+VV+NH+S +D L+ +L + G +A K LP++GW M +F++R A
Sbjct: 16 AIVVANHQSYLDPLLLSLLLPKRGRPLVFVA--KDELLNLPLLGWLMRLLGCIFIDRKNA 73
Query: 146 KDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLL----AAQEYAASTGLPI 195
KD + L L + +F EGTR +LL A A G+PI
Sbjct: 74 KDAANTLEYLVELLREGELVL--IFPEGTRSRGGELLPFKKGAFRLAREAGVPI 125
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 55.7 bits (135), Expect = 1e-09
Identities = 34/138 (24%), Positives = 58/138 (42%), Gaps = 16/138 (11%)
Query: 63 WWAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSS 122
GV+++ E L K ++V+NH+S +D LV R V KK
Sbjct: 6 RLLGVRVR-VEGLE--NLPPKGPVIIVANHQSYLDPLVLGAALPRPIR-----FVAKKEL 57
Query: 123 KFLPVIGWSMWFSEYLFLER-NWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKL 181
+P +GW + + ++R N L+ ++ L+ + + +F EGTR +L
Sbjct: 58 FKIPFLGWLLRLLGAIPIDRGNGRSAREALREAIEALK---EGESVVIFPEGTRSRDGEL 114
Query: 182 LAAQE----YAASTGLPI 195
L + A G+PI
Sbjct: 115 LPFKSGAFRLAKEAGVPI 132
>gnl|CDD|237584 PRK14014, PRK14014, putative acyltransferase; Provisional.
Length = 301
Score = 50.6 bits (122), Expect = 2e-07
Identities = 61/261 (23%), Positives = 104/261 (39%), Gaps = 55/261 (21%)
Query: 14 LLFFISGLVVNLIQAVCFVTIRPLS--------KNTYRRINR---WVAELLWLE-LVWIV 61
L +S L++ L V I L R +R ++AE W+ I+
Sbjct: 9 LRGLLSILLLILNTLFWSVPIIILGLLKLLLPIPAIRRACSRLLNFIAEA-WISINNVIL 67
Query: 62 DWWAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLV-GWVLAQRSGCLGSTLAV--- 117
+ + L K LV+SNH+S +D LV +V +R + +
Sbjct: 68 RLLPRTQWDVEGLEG---LSKKGWYLVISNHQSWVDILVLQYVFNRR-------IPMLKF 117
Query: 118 -MKKSSKFLPVIGWSMWFSEYLF--------LERNWA---KD-ESTLKSGLQRLRDYPQP 164
+K+ ++P +G + W ++ F L +N KD E+T ++ ++ + P
Sbjct: 118 FLKQELIWVPFLGLAWWALDFPFMKRYSKAYLAKNPELKGKDLETTRRA-CEKFKR--MP 174
Query: 165 FWLALFVEGTRFTQAKLLAAQ-EYAASTGLPIPRNVLIPRTKGFVSAVSHMRSFVPAIYD 223
+ FVEGTRFT K Q Y +++L P+ G A++ M + D
Sbjct: 175 TTIVNFVEGTRFTPEKHQQQQSPY---------QHLLKPKAGGIAFALNAMGEQFDGLLD 225
Query: 224 VTVAIPKSSPAPTMIRLFKGQ 244
VT+ P P+ L G+
Sbjct: 226 VTIVYP--DGRPSFWDLLSGR 244
>gnl|CDD|215488 PLN02901, PLN02901, 1-acyl-sn-glycerol-3-phosphate acyltransferase.
Length = 214
Score = 48.6 bits (116), Expect = 6e-07
Identities = 46/149 (30%), Positives = 70/149 (46%), Gaps = 26/149 (17%)
Query: 60 IVDWWAGVKIKLFVDRETYRLMGKEH-------ALVVSNHKSDIDWLVGWVLAQRSGCLG 112
I WA + F E + G E+ A+ VSNH+S +D + L LG
Sbjct: 22 INKVWATLSTSPFYKIE---VEGLENLPSPDEPAVYVSNHQSFLDI---YTLFH----LG 71
Query: 113 STLAVMKKSSKFL-PVIGWSMWFSEYLFLERNWAKDE-STLKSGLQRLRDYPQPFWLALF 170
+ K+S FL P+IGW+M+ + ++ L+R + + LK ++ L+ F+ F
Sbjct: 72 RPFKFISKTSIFLIPIIGWAMYMTGHIPLKRMDRRSQLECLKRCMELLKKGASVFF---F 128
Query: 171 VEGTRFTQAKLLA----AQEYAASTGLPI 195
EGTR KL A A AA TG+P+
Sbjct: 129 PEGTRSKDGKLAAFKKGAFSVAAKTGVPV 157
>gnl|CDD|129621 TIGR00530, AGP_acyltrn, 1-acyl-sn-glycerol-3-phosphate
acyltransferases. This model describes the core
homologous region of a collection of related proteins,
several of which are known to act as
1-acyl-sn-glycerol-3-phosphate acyltransferases (EC
2.3.1.51). Proteins scoring above the trusted cutoff are
likely to have the same general activity. However, there
is variation among characterized members as to whether
the acyl group can be donated by acyl carrier protein or
coenzyme A, and in the length and saturation of the
donated acyl group. 1-acyl-sn-glycerol-3-phosphate
acyltransferase is also called 1-AGP acyltransferase,
lysophosphatidic acid acyltransferase, and LPA
acyltransferase [Fatty acid and phospholipid metabolism,
Biosynthesis].
Length = 130
Score = 43.1 bits (102), Expect = 1e-05
Identities = 29/117 (24%), Positives = 48/117 (41%), Gaps = 11/117 (9%)
Query: 83 KEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLER 142
K LVV+NH+S++D L + KK K++P G +W + +F++R
Sbjct: 15 KSPVLVVANHQSNLDPLTLSAAFPPPIVF-----IAKKELKWIPFFGIMLWLTGAIFIDR 69
Query: 143 NWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLL----AAQEYAASTGLPI 195
+ +T + + +F EGTR +L A A G+PI
Sbjct: 70 ENIRAIATALKAAIEVLKQGRSIG--VFPEGTRSRGRDILPFKKGAFHIAIKAGVPI 124
>gnl|CDD|153244 cd06551, LPLAT, Lysophospholipid acyltransferases (LPLATs) of
glycerophospholipid biosynthesis. Lysophospholipid
acyltransferase (LPLAT) superfamily members are
acyltransferases of de novo and remodeling pathways of
glycerophospholipid biosynthesis. These proteins
catalyze the incorporation of an acyl group from either
acylCoAs or acyl-acyl carrier proteins (acylACPs) into
acceptors such as glycerol 3-phosphate, dihydroxyacetone
phosphate or lyso-phosphatidic acid. Included in this
superfamily are LPLATs such as glycerol-3-phosphate
1-acyltransferase (GPAT, PlsB),
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), lysophosphatidylcholine acyltransferase 1
(LPCAT-1), lysophosphatidylethanolamine acyltransferase
(LPEAT, also known as, MBOAT2, membrane-bound
O-acyltransferase domain-containing protein 2), lipid A
biosynthesis lauroyl/myristoyl acyltransferase,
2-acylglycerol O-acyltransferase (MGAT),
dihydroxyacetone phosphate acyltransferase (DHAPAT, also
known as 1 glycerol-3-phosphate O-acyltransferase 1) and
Tafazzin (the protein product of the Barth syndrome
(TAZ) gene).
Length = 187
Score = 42.8 bits (101), Expect = 3e-05
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 7/90 (7%)
Query: 87 LVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAK 146
L VSNH S D L+ ++L +R + ++ + P FS ++R+ +
Sbjct: 29 LFVSNHSSWWDGLILFLLLERGLRRDVYGLMDEELLERYPFFTRLGAFS----VDRDSPR 84
Query: 147 -DESTLKSGLQRLRDYPQPFWLALFVEGTR 175
+LK + L W +F EGTR
Sbjct: 85 SAAKSLKYVARLLSKPGSVVW--IFPEGTR 112
>gnl|CDD|153253 cd07991, LPLAT_LPCAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LPCAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
lysophosphatidylcholine acyltransferase 1 (LPCAT-1),
glycerol-3-phosphate acyltransferase 3 (GPAT3), and
similar sequences.
Length = 211
Score = 38.4 bits (90), Expect = 0.001
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 87 LVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAK 146
++V+NH S ID L+ L V KK LP IG + +F++R+ K
Sbjct: 27 IIVANHTSFIDPLI---LFSDLFPSI----VAKKELGKLPFIGTILRALGCIFVDRSEPK 79
Query: 147 DES-TLKSGLQRLRD--YPQPFWLALFVEGT 174
D ++ +R D +P + +F EGT
Sbjct: 80 DRKKVVEEIKERATDPNWPP---ILIFPEGT 107
>gnl|CDD|184979 PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase;
Provisional.
Length = 245
Score = 38.5 bits (89), Expect = 0.002
Identities = 34/127 (26%), Positives = 56/127 (44%), Gaps = 17/127 (13%)
Query: 74 DRETYRLMGKEHALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFLPVIGWSMW 133
D E+Y +A+ ++NH+++ D + + Q T+ V KKS ++P G W
Sbjct: 60 DAESY-----GNAIYIANHQNNYDMVTASNIVQPP-----TVTVGKKSLLWIPFFGQLYW 109
Query: 134 FSEYLFLER-NWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLL----AAQEYA 188
+ L ++R N K T+ + + W +F EGTR LL A A
Sbjct: 110 LTGNLLIDRNNRTKAHGTIAEVVNHFKKRRISIW--MFPEGTRSRGRGLLPFKTGAFHAA 167
Query: 189 ASTGLPI 195
+ G+PI
Sbjct: 168 IAAGVPI 174
>gnl|CDD|132337 TIGR03294, FrhG, coenzyme F420 hydrogenase, subunit gamma. This
model represents that clade of F420-dependent
hydrogenases (FRH) beta subunits found exclusively and
universally in methanogenic archaea. This protein
contains two 4Fe-4S cluster binding domains (pfam00037)
and scores above the trusted cutoff to model pfam01058
for the "NADH ubiquinone oxidoreductase, 20 Kd subunit"
family.
Length = 228
Score = 30.6 bits (69), Expect = 0.61
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 178 QAKLLAAQEYAASTGLPIPRNVLIPRTKGFVSAVSHMRSFVP--AIYDVTVAIPKSSPAP 235
+AK++ A A+TG N G + H SFVP + DV +AIP P+P
Sbjct: 77 KAKVVVALGACAATG-----NFTRYSRGGQQAQPQH-ESFVPITDVIDVDLAIPGCPPSP 130
Query: 236 TMIR 239
IR
Sbjct: 131 EAIR 134
>gnl|CDD|234340 TIGR03744, traC_PFL_4706, conjugative transfer ATPase, PFL_4706
family. Members of this protein family are predicted
ATP-binding proteins apparently associated with DNA
conjugal transfer. Members are found both in plasmids
and in bacterial chromosomal regions that appear to
derive from integrative elements such as conjugative
transposons. More distant homologs, outside the scope of
this family, include type IV secretion/conjugal transfer
proteins such as TraC, VirB4 and TrsE. The granularity
of this protein family definition is chosen so as to
represent one distinctive clade and act as a marker
through which to define and recognize the class of
mobile element it serves [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 893
Score = 30.0 bits (68), Expect = 1.3
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 144 WAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKL 181
+ +DE+ L ++RLRDY P G+ FTQA L
Sbjct: 86 YCQDETDLDQYVERLRDYIHP-----RARGSEFTQAWL 118
>gnl|CDD|227605 COG5280, COG5280, Phage-related minor tail protein [Function
unknown].
Length = 634
Score = 29.0 bits (65), Expect = 2.6
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 2 AIAAAAVIVPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYRRINRWVAELLWLELVW-- 59
++ + L S ++V I A+ IRPL+ + W A + W L W
Sbjct: 535 SVNHWDDLKTAVKLVIPSLILVAGILAI----IRPLAAGI-GTVGSWGAIMDWDALNWIS 589
Query: 60 IVDWW 64
+
Sbjct: 590 QAIFG 594
>gnl|CDD|215447 PLN02833, PLN02833, glycerol acyltransferase family protein.
Length = 376
Score = 28.6 bits (64), Expect = 3.0
Identities = 50/190 (26%), Positives = 78/190 (41%), Gaps = 55/190 (28%)
Query: 8 VIVPLGLLFFISGLVVN---LIQAVCFVTIRPLSKNTYRR--INRWVAELLWLELVWIVD 62
V++ G+LF + L++ +I F+ + L K R I R + E + ++
Sbjct: 90 VVIRYGILFPVRVLLLAIGWIIFLSAFIPVHFLLKGHKLRKKIERKLVE--LICSAFVAS 147
Query: 63 WWAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDWLV---------------GWVLAQR 107
W GV IK R + R + V+NH S ID++V GWV
Sbjct: 148 W-TGV-IKYHGPRPSRR----PKQVFVANHTSMIDFIVLEQMTPFAVIMQKHPGWV---- 197
Query: 108 SGCLGSTLAVMKKSSKFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDY---PQP 164
G L +T+ L +G +WF+ R AKD + ++LRD+ P
Sbjct: 198 -GFLQNTI---------LESVG-CIWFN------RTEAKDREVVA---KKLRDHVQDPDR 237
Query: 165 FWLALFVEGT 174
L +F EGT
Sbjct: 238 NPLLIFPEGT 247
>gnl|CDD|185139 PRK15217, PRK15217, fimbrial outer membrane usher protein;
Provisional.
Length = 826
Score = 28.2 bits (63), Expect = 5.1
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 133 WFSEYLFLERNWAKDESTLKSGLQ 156
W S L+LER +A+ TL+ G
Sbjct: 207 WKSNTLYLERGFAQLLGTLRVGDM 230
>gnl|CDD|182395 PRK10345, PRK10345, hypothetical protein; Provisional.
Length = 210
Score = 27.4 bits (61), Expect = 5.9
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 122 SKFLPVIGWSMWFSEYLFLERNWAK 146
S F+P+ WS W ER W +
Sbjct: 157 STFIPLATWSKWCCRRK-QERKWKR 180
>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional.
Length = 216
Score = 27.2 bits (60), Expect = 7.0
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 180 KLLAAQEYAASTGLP 194
K LAAQE AA++GLP
Sbjct: 180 KALAAQEAAANSGLP 194
>gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional.
Length = 381
Score = 27.3 bits (61), Expect = 8.6
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 54 WLELVWIVDWWAG-VKIKLFVDRETYRLMGKEHA--LVVSNH 92
W +L WI D+W G + IK +D E R + A +VVSNH
Sbjct: 234 WKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNH 275
>gnl|CDD|216672 pfam01738, DLH, Dienelactone hydrolase family.
Length = 215
Score = 26.9 bits (60), Expect = 8.8
Identities = 18/90 (20%), Positives = 30/90 (33%), Gaps = 12/90 (13%)
Query: 39 KNTYRRINRWVAELLWLELVWIVDWWAGVKIKLFVDRETYRLMGKEHALVVSNHKSDIDW 98
N R I +AE ++ D +A + RE R M + + D+
Sbjct: 27 NNFIRDIAARLAEEGYV--ALCPDLYARQGLDPTDPREAARAMRGLLSKRMEAVVDDLLA 84
Query: 99 LVGWVLAQRSG----------CLGSTLAVM 118
+ ++ Q CLG LA +
Sbjct: 85 AINYLRGQPYVDTKKVGVVGFCLGGRLAFL 114
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.137 0.436
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,957,129
Number of extensions: 1237185
Number of successful extensions: 1761
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1747
Number of HSP's successfully gapped: 42
Length of query: 247
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 153
Effective length of database: 6,768,326
Effective search space: 1035553878
Effective search space used: 1035553878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.2 bits)