RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 037958
(247 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.9 bits (74), Expect = 0.090
Identities = 15/108 (13%), Positives = 35/108 (32%), Gaps = 19/108 (17%)
Query: 74 DRETYRLM------GKE--HALVVSNHKSDIDWLVGWVLAQRSGCLGSTLAVMKKSSKFL 125
T RL +E V + + +L+ ++ ++ +
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS---PIKTEQRQPSMMTRMYIEQRD 117
Query: 126 PVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFWLALFVEG 173
+ + F++Y + R + L+ L LR P + ++G
Sbjct: 118 RLYNDNQVFAKY-NVSR--LQPYLKLRQALLELR--PAKN---VLIDG 157
Score = 31.7 bits (71), Expect = 0.27
Identities = 35/208 (16%), Positives = 69/208 (33%), Gaps = 44/208 (21%)
Query: 31 FVTIRPLSKNTYRRINRWVAELLWLELVWIVDWWAGVKIKLFVDRETY-----RLMGKEH 85
F T+ + ++ +V E+L + +++ + + + Y RL
Sbjct: 68 FWTLLSKQEEMVQK---FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 86 ALV---VSNHKSDIDWLVGWVLAQRS----------GCLG-STLAVMK-KSSKFLPVIGW 130
VS + L +L R G G + +A+ S K + +
Sbjct: 125 VFAKYNVSRLQ-PYLKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVCLSYKVQCKMDF 182
Query: 131 SM-WFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFWLA---------LFVEGTRFTQAK 180
+ W + +N E+ L+ LQ+L P W + L + + +
Sbjct: 183 KIFWLN-----LKNCNSPETVLEM-LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 181 LLAAQEYAASTGLPIPRNVLIPRT-KGF 207
LL ++ Y L + NV + F
Sbjct: 237 LLKSKPYENC--LLVLLNVQNAKAWNAF 262
Score = 31.7 bits (71), Expect = 0.27
Identities = 37/238 (15%), Positives = 65/238 (27%), Gaps = 88/238 (36%)
Query: 7 AVIVPLGLLFFISGLVVNLIQAVCFVTIRPLSKNTYR-RINRWVAE------LLWLELVW 59
V+ L L + + N + L ++ + + R + LL L V
Sbjct: 197 TVLEMLQKLLYQ--IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 60 IVDWWA------GVKIKLFVDRE---TYRLMGKEHALVVSNHKSD-----------IDWL 99
+ A KI L R T L + +H S + +L
Sbjct: 255 --NAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 100 VGWVLAQ---RSGCLGSTLAVMKKSSKFLPVIG---------WSMWFSEYLFLERNWAKD 147
Q R + L +I W W +++ + K
Sbjct: 312 --DCRPQDLPREVLTTNPRR--------LSIIAESIRDGLATWDNW--KHVNCD----KL 355
Query: 148 ESTLKSGLQRLR--DYPQPFW-LALFVEGTRFTQAKLLAAQEYAASTGLPIPRNVLIP 202
+ ++S L L +Y + F L++F P + IP
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVF-------------------------PPSAHIP 388
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.38
Identities = 45/268 (16%), Positives = 78/268 (29%), Gaps = 93/268 (34%)
Query: 2 AIAAA--------AVIVPLGLLFFISGLVVNLIQAVCFVTIRP--LSKN--------TY- 42
AIA +V + +LFFI G+ +A ++ P L + +
Sbjct: 282 AIAETDSWESFFVSVRKAITVLFFI-GVRCY--EAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 43 ---RRINRWVAELLWLELVWIVDWWAGVKIKLFVDRETYRLMGKEH---AL-------VV 89
+ + +++ +V++ L + +L VV
Sbjct: 339 LSISNLTQ-------------------EQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 90 SNHKSDIDWLVGWVLAQRSGCLGSTLAVMKK---------SSKFLPVIGWSMWF-SEYLF 139
S L G L R S L + S++FLPV + F S L
Sbjct: 380 SGPPQS---LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV---ASPFHSHLL- 432
Query: 140 LERNWAKDESTLKSGLQRLRDYPQPFW---LALFVEGTRFTQAKLLAAQEYAASTGLPIP 196
+ L F + + V T F + L + + S I
Sbjct: 433 --------VPASDLINKDLVKNNVSFNAKDIQIPVYDT-FDGSDL---RVLSGSISERIV 480
Query: 197 RNVLI-----PRTKGFVSAVSHMRSFVP 219
++ T F +H+ F P
Sbjct: 481 DCIIRLPVKWETTTQF--KATHILDFGP 506
Score = 29.6 bits (66), Expect = 1.1
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 7/30 (23%)
Query: 174 TRFTQAKLLAAQEYAA-----STGLPIPRN 198
T+FTQ L E AA S GL IP +
Sbjct: 1729 TQFTQPALTLM-EKAAFEDLKSKGL-IPAD 1756
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.83
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 14/38 (36%)
Query: 141 ERNWAKD-ESTLKSGLQRLRDY-PQ--PFWLALFVEGT 174
E+ K +++LK L Y P AL ++ T
Sbjct: 18 EKQALKKLQASLK--L-----YADDSAP---ALAIKAT 45
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.8 bits (59), Expect = 8.3
Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 7/71 (9%)
Query: 175 RFTQAKLLAAQEYAASTGLPIP----RNVLIPRTKGFV-SAVSHMRSFVPAIYDVTVAIP 229
T L++ E ++G+ P + V + S + + + D P
Sbjct: 1011 PITLFVLVSVVEAFIASGITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEP 1070
Query: 230 KSSP--APTMI 238
+ + I
Sbjct: 1071 VQNDILQESFI 1081
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter
pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A*
Length = 371
Score = 26.4 bits (57), Expect = 9.7
Identities = 26/165 (15%), Positives = 53/165 (32%), Gaps = 11/165 (6%)
Query: 58 VWIVDWWAGVKIKLFVDRETYRLMGKEHALVVS-NHKSDIDWLVGWVLAQRSGCLGSTLA 116
+ + +WW +IK F + Y ++ + + + + N D + G L L A
Sbjct: 28 IAVANWWGDEEIKEFKNSVLYFILSQRYTITLHQNPNEFSDLVFGNPLGSARKILSYQNA 87
Query: 117 -----VMKKSSKFLPVIGWSMWFSEYLFLER--NWAKDESTLKSGLQRLRDYPQPFWLAL 169
+ S + +++ F E F +R L + + D P+ L
Sbjct: 88 KRVFYTGENESPNFNLFDYAIGFDELDFNDRYLRMPLYYDRLHHKAESVNDTTAPYKLKD 147
Query: 170 FVEGTRFTQAKLLAAQEYAASTGLPIPRNVLIPRTKGFVSAVSHM 214
+ + + + P +GF S V+
Sbjct: 148 NSLYALKKPSHCFKEKHPNLC---AVVNDESDPLKRGFASFVASN 189
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.137 0.436
Gapped
Lambda K H
0.267 0.0555 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,900,597
Number of extensions: 227823
Number of successful extensions: 594
Number of sequences better than 10.0: 1
Number of HSP's gapped: 594
Number of HSP's successfully gapped: 12
Length of query: 247
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 156
Effective length of database: 4,160,982
Effective search space: 649113192
Effective search space used: 649113192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.7 bits)