RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 037958
         (247 letters)



>d1iuqa_ c.112.1.1 (A:) Glycerol-3-phosphate (1)-acyltransferase
           {Cushaw squash (Cucurbita moschata) [TaxId: 3662]}
          Length = 367

 Score = 37.7 bits (87), Expect = 9e-04
 Identities = 16/160 (10%), Positives = 43/160 (26%), Gaps = 27/160 (16%)

Query: 83  KEHALVVSNHKSDIDWLVGWVLAQRSGC--LGSTLAVMKKSSKFLPVIGWSMWFSEYLFL 140
             + +++SNH+++ D  +  +L +++      +T+ V        P+          + +
Sbjct: 129 GHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICV 188

Query: 141 ERNW-------------AKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEY 187
                              +  +LK     LR   Q  W  +   G R            
Sbjct: 189 YSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIW--IAPSGGRDRPDPS------ 240

Query: 188 AASTGLPIPRNVLIPRTKGFVSAVSHMRSFVPAIYDVTVA 227
                           +   +  +         ++ + + 
Sbjct: 241 ----TGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALL 276


>d1hdmb2 d.19.1.1 (B:3-87) Class II MHC beta chain, N-terminal
           domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}
          Length = 85

 Score = 25.2 bits (55), Expect = 2.8
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 123 KFLPVIGWSMWFSEYLFLERNWAKDESTLKSGLQRLRDYPQPFWLAL 169
           K  P    +   S++L  +    +      +GLQ    + QPFW +L
Sbjct: 40  KMAPCNSLANVLSQHLNQKDTLMQR----LNGLQNCATHTQPFWGSL 82


>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase
           {Synechococcus elongatus [TaxId: 32046]}
          Length = 271

 Score = 26.1 bits (56), Expect = 3.5
 Identities = 8/55 (14%), Positives = 17/55 (30%)

Query: 16  FFISGLVVNLIQAVCFVTIRPLSKNTYRRINRWVAELLWLELVWIVDWWAGVKIK 70
              SG+    ++     +       T   I RW+ EL  +    ++        +
Sbjct: 189 SASSGMDPKPLRIFNPASQAKKFDATATYIKRWLPELRHVHPKDLISGEITPIER 243


>d2ijqa1 a.246.2.1 (A:14-158) Hypothetical protein rrnAC1037
           {Haloarcula marismortui [TaxId: 2238]}
          Length = 145

 Score = 25.6 bits (56), Expect = 4.2
 Identities = 8/57 (14%), Positives = 18/57 (31%), Gaps = 1/57 (1%)

Query: 143 NWAKDESTLKSGLQRLRDYPQPFWLALFVEGTRFTQAKLLAAQEYAASTGLPIPRNV 199
           +     S  ++ LQ  R  P  ++  + +   R T    L+         + +    
Sbjct: 75  DDDGMRSLFRTSLQYFRGVPNDYY-GVDLLDVRTTVTNALSDPSALHGWQIRLDGEY 130


>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase
           {Trypanosoma cruzi [TaxId: 5693]}
          Length = 238

 Score = 25.0 bits (53), Expect = 9.1
 Identities = 8/35 (22%), Positives = 12/35 (34%)

Query: 205 KGFVSAVSHMRSFVPAIYDVTVAIPKSSPAPTMIR 239
            G V    + R+ V  IY +     +    P  I 
Sbjct: 187 NGGVQVDEYSRTNVSNIYAIGDVTNRVMLTPVAIN 221


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.137    0.436 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 948,208
Number of extensions: 43279
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 6
Length of query: 247
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,268,006
Effective search space: 207952984
Effective search space used: 207952984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.1 bits)