BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037959
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WYP|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin 1
Length = 136
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 26/140 (18%)
Query: 26 RRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQ 85
R E EW+E GV+ F+ L++G+ILC INK+ PG+V K+ E++
Sbjct: 18 REQELREWIE------GVTGRRIGNNFMDGLKDGIILCEFINKLQPGSVKKINESTQ--- 68
Query: 86 SFSRESQPPPAYQYFENVRNFLVAVEELKLP---AFEASDLERDTLEAGSAAKIVDCILS 142
+ EN+ NF+ A+ + + FEA+DL +T + ++ +L+
Sbjct: 69 ----------NWHQLENIGNFIKAITKYGVKPHDIFEANDLFENT----NHTQVQSTLLA 114
Query: 143 LKSYHEWKQMSCENGFYKPA 162
L S + K G P+
Sbjct: 115 LASMAKTKGNKVNVGVSGPS 134
>pdb|1H67|A Chain A, Nmr Structure Of The Ch Domain Of Calponin
Length = 108
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 22/98 (22%)
Query: 33 WLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQ 92
W+E G + F+ L++G+ILC INK+ PG+V KV +
Sbjct: 11 WIE------GATGRRIGDNFMDGLKDGVILCELINKLQPGSVQKV-------------ND 51
Query: 93 PPPAYQYFENVRNFLVAVEELKLP---AFEASDLERDT 127
P + EN+ NFL A++ + FEA+DL +T
Sbjct: 52 PVQNWHKLENIGNFLRAIKHYGVKPHDIFEANDLFENT 89
>pdb|1WYN|A Chain A, Solution Structure Of The Ch Domain Of Human Calponin-2
Length = 146
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 26/121 (21%)
Query: 26 RRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQ 85
+ E W+E L G +S P +F L++G ILC +NK+ PG+V K+
Sbjct: 18 KEAELRTWIEGLTG---LSIGP---DFQKGLKDGTILCTLMNKLQPGSVPKI-------- 63
Query: 86 SFSRESQPPPAYQYFENVRNFLVAVEELKL---PAFEASDLERDTLEAGSAAKIVDCILS 142
+R Q + EN+ NF+ A+ + FEA+DL E+G+ ++ +L+
Sbjct: 64 --NRSMQ---NWHQLENLSNFIKAMVSYGMNPVDLFEANDL----FESGNMTQVQVSLLA 114
Query: 143 L 143
L
Sbjct: 115 L 115
>pdb|1WYR|A Chain A, Solution Structure Of The Ch Domain Of Human Rho Guanine
Nucleotide Exchange Factor 6
Length = 121
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 18/89 (20%)
Query: 41 LGVSSEPSE-----REFI-SCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPP 94
LGV P + EF+ S L+NG++LC IN++ PG+V K + P
Sbjct: 18 LGVLESPKKTICDPEEFLKSSLKNGVVLCKLINRLMPGSVEKFCLD------------PQ 65
Query: 95 PAYQYFENVRNFLVAVEELKLPAFEASDL 123
N+ +FL L++ F+ DL
Sbjct: 66 TEADCINNINDFLKGCATLQVEIFDPDDL 94
>pdb|2L3G|A Chain A, Solution Nmr Structure Of Ch Domain Of Rho Guanine
Nucleotide Exchange Factor 7 From Homo Sapiens,
Northeast Structural Genomics Consortium Target Hr4495e
Length = 126
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 13/69 (18%)
Query: 56 LRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENVRNFLVAV-EELK 114
L++G++LC + ++ PGT+ KV +P + N+R FL L+
Sbjct: 45 LKDGVVLCRLLERLLPGTIEKVY------------PEPRSESECLSNIREFLRGCGASLR 92
Query: 115 LPAFEASDL 123
L F+A+DL
Sbjct: 93 LETFDANDL 101
>pdb|1RT8|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Schizosaccharomyces Pombe Fimbrin
Length = 513
Score = 33.5 bits (75), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 47 PSEREFISCLRNGLILCNAINKINPGTV 74
PS +F + LR+GLIL A +KI P TV
Sbjct: 301 PSIHDFFNNLRDGLILLQAYDKITPNTV 328
>pdb|1UJO|A Chain A, Solution Structure Of The Ch Domain From Mouse Trangelin
Length = 144
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 48/118 (40%), Gaps = 16/118 (13%)
Query: 31 AEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRE 90
EW+ GP + F L+NG+IL +N + P E S ++ E
Sbjct: 15 VEWIVVQCGPDVGRPDRGRLGFQVWLKNGVILSKLVNSLYP-------EGSKPVK--VPE 65
Query: 91 SQPPPAYQYFENVRNFLVAVEE---LKLPAFEASDLERDTLEAGSAAKIVDCILSLKS 145
+ P ++ E V FL A E+ +K F+ DL E A + +++L S
Sbjct: 66 NPPSMVFKQMEQVAQFLKAAEDYGVIKTDMFQTVDL----YEGKDMAAVQRTLMALGS 119
>pdb|1PXY|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
pdb|1PXY|B Chain B, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
Length = 506
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 46 EPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYI 84
+P + +++G++LC IN PGT+ + N+ +
Sbjct: 33 DPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRV 71
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 43 VSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFEN 102
+SSE E + C +L A I PG T+ ++++ ++ +R P P Y+
Sbjct: 76 LSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSP-LNYYNF 134
Query: 103 VRNFLVAVEELKLPAFEASDLERDTLEAGSAAKIVDCILSLKSYH 147
++ +V E+ +R L+ G VD L YH
Sbjct: 135 PKSCCTSVNEVICHGIP----DRRPLQEGDIVN-VDITLYRNGYH 174
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 43 VSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFEN 102
+SSE E + C +L A I PG T+ ++++ ++ +R P P Y+
Sbjct: 52 LSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPL-NYYNF 110
Query: 103 VRNFLVAVEELKLPAFEASDLERDTLEAGSAAKIVDCILSLKSYH 147
++ +V E+ +R L+ G VD L YH
Sbjct: 111 PKSCCTSVNEVICHGIP----DRRPLQEGDIVN-VDITLYRNGYH 150
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 43 VSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFEN 102
+SSE E + C +L A I PG T+ ++++ ++ +R P P Y+
Sbjct: 51 LSSEDIEGMRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPL-NYYNF 109
Query: 103 VRNFLVAVEELKLPAFEASDLERDTLEAGSAAKIVDCILSLKSYH 147
++ +V E+ +R L+ G VD L YH
Sbjct: 110 PKSCCTSVNEVICHGIP----DRRPLQEGDIVN-VDITLYRNGYH 149
>pdb|3CRV|A Chain A, "xpd_helicase"
pdb|3CRW|1 Chain 1, "xpd_apo"
Length = 551
Score = 26.9 bits (58), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 24/109 (22%)
Query: 50 REFISC-LRNGLILCN------AINKINPGTVTKVVENSSYIQSFSRESQ---------- 92
REFI LR +I+ + +N++ +++++ + QS S ES+
Sbjct: 165 REFIDIDLREYMIVIDEAHNLDKVNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQL 224
Query: 93 -----PPPAYQYFENVRNFLVAVEELKLPAFEASDLERDTLEAGSAAKI 136
P Y ENV ++ EEL++ A + D+ +D+L+ G KI
Sbjct: 225 REVVLPDEKYIKVENVPK--LSKEELEILADDYEDIRKDSLKQGKVNKI 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,268,835
Number of Sequences: 62578
Number of extensions: 229411
Number of successful extensions: 548
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 535
Number of HSP's gapped (non-prelim): 15
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)