Query 037959
Match_columns 222
No_of_seqs 154 out of 864
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 06:08:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037959.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037959hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2046 Calponin [Cytoskeleton 99.9 1.1E-25 2.4E-30 191.1 11.5 107 24-151 24-133 (193)
2 COG5199 SCP1 Calponin [Cytoske 99.8 7.1E-21 1.5E-25 156.2 8.4 108 24-153 12-122 (178)
3 cd00014 CH Calponin homology d 99.8 3.9E-20 8.5E-25 140.2 8.1 103 26-147 2-106 (107)
4 COG5261 IQG1 Protein involved 99.8 3E-19 6.6E-24 176.3 9.4 119 11-150 30-151 (1054)
5 KOG2128 Ras GTPase-activating 99.7 1.4E-18 3.1E-23 178.2 7.9 117 11-148 28-147 (1401)
6 smart00033 CH Calponin homolog 99.7 6.8E-18 1.5E-22 126.6 6.9 99 27-143 2-103 (103)
7 PF00307 CH: Calponin homology 99.7 1.4E-16 3.1E-21 120.5 7.3 106 27-148 1-108 (108)
8 KOG2996 Rho guanine nucleotide 99.6 3.7E-16 8.1E-21 150.2 8.5 107 28-152 5-124 (865)
9 KOG0532 Leucine-rich repeat (L 99.6 3.9E-16 8.4E-21 150.6 7.0 111 21-148 572-687 (722)
10 KOG0046 Ca2+-binding actin-bun 98.6 2.6E-08 5.6E-13 95.8 5.0 107 25-147 119-234 (627)
11 PF11971 CAMSAP_CH: CAMSAP CH 98.4 2.5E-07 5.4E-12 69.8 4.0 67 46-123 10-81 (85)
12 KOG0046 Ca2+-binding actin-bun 98.2 8.8E-06 1.9E-10 78.7 9.6 103 27-149 390-496 (627)
13 PF06395 CDC24: CDC24 Calponin 97.4 0.00038 8.2E-09 53.1 6.0 82 49-143 3-88 (89)
14 KOG0517 Beta-spectrin [Cytoske 96.7 0.0089 1.9E-07 65.1 9.7 100 21-142 44-145 (2473)
15 COG5069 SAC6 Ca2+-binding acti 95.5 0.017 3.7E-07 56.0 4.6 85 24-117 124-209 (612)
16 PF06294 DUF1042: Domain of Un 91.0 0.25 5.5E-06 41.1 3.5 96 30-144 1-99 (158)
17 KOG3631 Alpha-parvin and relat 90.1 1.8 3.8E-05 39.8 8.2 112 16-148 81-196 (365)
18 cd08539 SAM_PNT-ESE-3-like Ste 75.3 1.8 3.9E-05 32.0 1.6 42 24-67 7-48 (74)
19 KOG3000 Microtubule-binding pr 72.1 13 0.00028 34.3 6.6 78 26-123 16-96 (295)
20 cd08537 SAM_PNT-ESE-1-like Ste 70.9 3.3 7.1E-05 31.0 2.0 42 24-67 12-53 (78)
21 PF14604 SH3_9: Variant SH3 do 63.0 5.5 0.00012 26.4 1.8 19 203-221 4-23 (49)
22 COG5069 SAC6 Ca2+-binding acti 62.3 8.8 0.00019 37.9 3.6 106 30-150 384-497 (612)
23 cd08203 SAM_PNT Sterile alpha 62.0 6.3 0.00014 28.0 2.0 39 24-66 4-42 (66)
24 cd08757 SAM_PNT_ESE Sterile al 58.0 4.5 9.8E-05 29.0 0.7 41 24-66 4-44 (68)
25 PF05622 HOOK: HOOK protein; 56.6 11 0.00025 38.1 3.5 40 28-74 10-49 (713)
26 cd08535 SAM_PNT-Tel_Yan Steril 55.6 7.8 0.00017 28.0 1.6 40 24-67 5-44 (68)
27 KOG0035 Ca2+-binding actin-bun 52.9 13 0.00028 39.0 3.3 88 27-135 144-233 (890)
28 smart00251 SAM_PNT SAM / Point 51.6 10 0.00022 28.2 1.7 39 24-66 19-57 (82)
29 cd08533 SAM_PNT-ETS-1,2 Steril 50.5 9 0.00019 27.9 1.2 38 24-65 6-43 (71)
30 cd08532 SAM_PNT-PDEF-like Ster 49.9 9.3 0.0002 28.2 1.3 38 24-66 12-49 (76)
31 cd08538 SAM_PNT-ESE-2-like Ste 49.9 11 0.00025 28.0 1.7 42 24-67 9-50 (78)
32 cd08536 SAM_PNT-Mae Sterile al 48.0 14 0.0003 26.5 1.9 38 25-66 5-42 (66)
33 PF00018 SH3_1: SH3 domain; I 48.0 11 0.00025 24.3 1.3 20 202-221 4-24 (48)
34 cd08531 SAM_PNT-ERG_FLI-1 Ster 45.6 10 0.00022 27.9 0.9 38 24-65 7-45 (75)
35 cd08534 SAM_PNT-GABP-alpha Ste 43.2 17 0.00037 27.6 1.8 38 24-65 21-58 (89)
36 cd08541 SAM_PNT-FLI-1 Sterile 43.0 17 0.00036 27.9 1.7 38 24-65 19-57 (91)
37 PF07653 SH3_2: Variant SH3 do 42.4 18 0.0004 24.0 1.7 19 203-221 7-26 (55)
38 cd08540 SAM_PNT-ERG Sterile al 39.1 18 0.00039 26.6 1.3 38 24-65 7-45 (75)
39 cd08542 SAM_PNT-ETS-1 Sterile 38.0 17 0.00036 27.7 1.0 38 24-65 21-58 (88)
40 cd08543 SAM_PNT-ETS-2 Sterile 37.6 17 0.00037 27.7 1.1 38 24-65 21-58 (89)
41 KOG1029 Endocytic adaptor prot 35.6 17 0.00037 37.9 1.0 15 207-221 1065-1080(1118)
42 PF02198 SAM_PNT: Sterile alph 35.0 16 0.00035 26.9 0.5 40 24-67 19-58 (84)
43 KOG0081 GTPase Rab27, small G 34.7 64 0.0014 27.8 4.1 39 102-145 143-181 (219)
44 KOG0251 Clathrin assembly prot 33.8 58 0.0012 32.1 4.3 45 98-148 247-292 (491)
45 PRK14834 undecaprenyl pyrophos 31.9 86 0.0019 28.1 4.8 45 95-146 39-88 (249)
46 PF00536 SAM_1: SAM domain (St 30.7 18 0.0004 24.5 0.2 35 25-65 3-37 (64)
47 KOG0517 Beta-spectrin [Cytoske 29.9 1.8E+02 0.0039 33.6 7.4 79 27-123 169-249 (2473)
48 PF10281 Ish1: Putative stress 26.7 1.3E+02 0.0029 18.6 3.7 30 27-58 6-36 (38)
49 KOG3631 Alpha-parvin and relat 26.5 2.6E+02 0.0056 26.0 6.8 103 24-145 256-360 (365)
50 KOG4226 Adaptor protein NCK/Do 25.0 48 0.001 30.7 1.9 38 183-220 92-134 (379)
51 PRK14829 undecaprenyl pyrophos 22.3 1.4E+02 0.0031 26.5 4.4 44 95-145 39-87 (243)
52 PRK14835 undecaprenyl pyrophos 22.0 1.4E+02 0.0031 27.1 4.3 44 96-146 67-115 (275)
53 TIGR00055 uppS undecaprenyl di 21.3 1.5E+02 0.0032 26.2 4.2 44 95-145 24-72 (226)
54 PRK14837 undecaprenyl pyrophos 20.4 1.7E+02 0.0037 25.9 4.4 44 95-145 31-79 (230)
55 PRK14830 undecaprenyl pyrophos 20.3 1.7E+02 0.0036 26.2 4.4 42 97-145 49-95 (251)
56 PRK14839 undecaprenyl pyrophos 20.1 1.8E+02 0.0039 26.0 4.5 44 95-145 34-82 (239)
No 1
>KOG2046 consensus Calponin [Cytoskeleton]
Probab=99.93 E-value=1.1e-25 Score=191.08 Aligned_cols=107 Identities=34% Similarity=0.565 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCccccccCCccccccCCCCCCCCcchhhhhH
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENV 103 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~kI~~~ps~~~~~~~~~~~~~~F~~~ENI 103 (222)
...+.++++||+.++.. .. +...+|.+.|+||+|||+|+|+|+|+++++++. +...|.++|||
T Consensus 24 ~~~~~el~~WI~~~~~~-~~---~~~~~f~~~LKDG~iLCkl~N~l~p~~~~~~~~-------------s~~~f~qmEnI 86 (193)
T KOG2046|consen 24 DELEKELREWIENVVLT-EL---PARGDFQDLLKDGVILCKLINKLYPGVVKKINE-------------SKMAFVQMENI 86 (193)
T ss_pred HHHHHHHHHHHHHhhcc-CC---CcccCHHHHHcchHHHHHHHHHhCcCccccccc-------------ccccHHHHHHH
Confidence 56788999999997443 22 235799999999999999999999988888763 26889999999
Q ss_pred HHHHHHHHHCCCC---CccCCCCcccccccCChhHHHHHHHHHHHhHHHhh
Q 037959 104 RNFLVAVEELKLP---AFEASDLERDTLEAGSAAKIVDCILSLKSYHEWKQ 151 (222)
Q Consensus 104 ~~FL~ac~~lGv~---~Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r~~~~k~ 151 (222)
++||.||+.+||+ .|++.|| ||+||+.+|+.||++|++.+..+.
T Consensus 87 s~Fi~a~~~ygv~~~d~FqtvDL----fE~kd~~~V~vtL~aLa~~a~~~~ 133 (193)
T KOG2046|consen 87 SNFIKAAKKYGVPEVDLFQTVDL----FEGKDMAQVQVTLLALARKAQKKG 133 (193)
T ss_pred HHHHHHHHhcCCChhhccccccc----ccCCCHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999 5999999 999999999999999999998774
No 2
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=99.84 E-value=7.1e-21 Score=156.15 Aligned_cols=108 Identities=26% Similarity=0.557 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCccccccCCccccccCCCCCCCCcchhhhhH
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENV 103 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~kI~~~ps~~~~~~~~~~~~~~F~~~ENI 103 (222)
...+.+++.||+++++. .+. | ..+|.+.|+|||+||+..|...|+-|+-- . ....|.++|||
T Consensus 12 ~~~~kev~~Wie~~l~~-k~~--p-pgdll~~lkdGv~lCril~ea~~~~I~yK---e-----------SkmpFVQmenI 73 (178)
T COG5199 12 DKQQKEVTLWIETVLGE-KFE--P-PGDLLSLLKDGVRLCRILNEASPLDIKYK---E-----------SKMPFVQMENI 73 (178)
T ss_pred HHHHHHHHHHHHHHHHh-hhC--C-cccHHHHHhcchHHHHHHhhcCcccceec---c-----------cCCceeeHHHH
Confidence 34678999999999998 442 2 35999999999999999999988775321 1 26789999999
Q ss_pred HHHHHHHHHCCCC---CccCCCCcccccccCChhHHHHHHHHHHHhHHHhhcc
Q 037959 104 RNFLVAVEELKLP---AFEASDLERDTLEAGSAAKIVDCILSLKSYHEWKQMS 153 (222)
Q Consensus 104 ~~FL~ac~~lGv~---~Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r~~~~k~~~ 153 (222)
+.||.+.++++|| +|+|+|| ||+||..+|+.||.+|+|++.++-++
T Consensus 74 s~Fin~~~k~~vpe~elFQT~DL----FE~kd~~qV~~~l~slSRya~K~~~~ 122 (178)
T COG5199 74 SSFINGLKKLRVPEYELFQTNDL----FEAKDLRQVVICLYSLSRYAQKERMF 122 (178)
T ss_pred HHHHHHHHHhCCCHHHHHHhhhH----HhhcCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999 6999999 99999999999999999999987654
No 3
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.82 E-value=3.9e-20 Score=140.15 Aligned_cols=103 Identities=26% Similarity=0.501 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCccccccCCccccccCCCCCCCCcchhhhhHHH
Q 037959 26 RRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENVRN 105 (222)
Q Consensus 26 r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~kI~~~ps~~~~~~~~~~~~~~F~~~ENI~~ 105 (222)
+++++.+||+.+++.. .+ +...+|.+.|+||++||+|+|.+.|+.++..... +...|++++||..
T Consensus 2 ~~~~l~~Win~~l~~~-~~--~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~------------~~~~~~~~~Ni~~ 66 (107)
T cd00014 2 QKEELLRWINKVLGEY-GP--VTINNFSTDLKDGIALCKLLNSLSPDLIDKKKIN------------PLSRFKRLENINL 66 (107)
T ss_pred hHHHHHHHHHHHhccC-CC--ccHHHHHHHHhchHHHHHHHHHHCcccccccccc------------ccchhhHHHHHHH
Confidence 5789999999999983 21 2578999999999999999999999998766531 2567899999999
Q ss_pred HHHHHHHCCCC-C-ccCCCCcccccccCChhHHHHHHHHHHHhH
Q 037959 106 FLVAVEELKLP-A-FEASDLERDTLEAGSAAKIVDCILSLKSYH 147 (222)
Q Consensus 106 FL~ac~~lGv~-~-Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r~~ 147 (222)
|+++|+++|++ . |+++|| ++.+|.++|+.||++|.++.
T Consensus 67 ~l~~~~~~gi~~~~~~~~Dl----~~~~n~~~vl~~l~~l~~~~ 106 (107)
T cd00014 67 ALNFAEKLGVPVVNFDAEDL----VEDGDEKLVLGLLWSLIRKF 106 (107)
T ss_pred HHHHHHHcCCceeccCHHHH----hhCCCceeeHHHHHHHHHhh
Confidence 99999999999 4 999999 99999999999999999864
No 4
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms]
Probab=99.78 E-value=3e-19 Score=176.28 Aligned_cols=119 Identities=29% Similarity=0.478 Sum_probs=107.5
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCccccccCCccccccCCC
Q 037959 11 HDFNLASRKAEESAWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRE 90 (222)
Q Consensus 11 ~d~~~a~rka~e~~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~kI~~~ps~~~~~~~~ 90 (222)
++-+..+-+||||+||-.|++.||++++++ .+| ...|-+.||+||+|.+|..+++|+.+..|.. +
T Consensus 30 ~ak~r~~lraYeyLCRv~EaK~WIee~~~~-~l~----~~~fe~slRnGV~La~l~q~f~pd~~~~iF~--~-------- 94 (1054)
T COG5261 30 SAKNRSALRAYEYLCRVSEAKIWIEEVIEE-ALP----ELCFEDSLRNGVFLAKLTQRFNPDLTTVIFP--A-------- 94 (1054)
T ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHhcc-CCc----hhhHHHHHhccchHHHHHHHhCCCceeEeee--c--------
Confidence 555567778999999999999999999998 553 5789999999999999999999999999873 2
Q ss_pred CCCCCcchhhhhHHHHHHHHHHCCCCC---ccCCCCcccccccCChhHHHHHHHHHHHhHHHh
Q 037959 91 SQPPPAYQYFENVRNFLVAVEELKLPA---FEASDLERDTLEAGSAAKIVDCILSLKSYHEWK 150 (222)
Q Consensus 91 ~~~~~~F~~~ENI~~FL~ac~~lGv~~---Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r~~~~k 150 (222)
...+|++.+||+.||....++|+|. ||..|| ||+||++||+.||++|+.+..++
T Consensus 95 --~~LQfrHtdNIN~Fld~i~~vGlPe~FhFEl~Dl----YekKN~pkViyciHaL~~~ls~~ 151 (1054)
T COG5261 95 --DKLQFRHTDNINAFLDLIEHVGLPESFHFELQDL----YEKKNIPKVIYCIHALISMLSWP 151 (1054)
T ss_pred --ccceeeccccHHHHHhHhhhcCCcceeeeehHhh----hccCCcchhHHHHHHHHHHhcCC
Confidence 3789999999999999999999995 999999 99999999999999999998543
No 5
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=99.75 E-value=1.4e-18 Score=178.18 Aligned_cols=117 Identities=25% Similarity=0.360 Sum_probs=102.9
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCccccccCCccccccCCC
Q 037959 11 HDFNLASRKAEESAWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRE 90 (222)
Q Consensus 11 ~d~~~a~rka~e~~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~kI~~~ps~~~~~~~~ 90 (222)
+|=..-++.||||+||-+|++.||++++|+ ++|+ ..+|.+.|||||+|.+|.|.+.|+.-.++...
T Consensus 28 ~~~rr~~~vaYeyLCr~eE~k~W~e~cl~e-dL~p---ttele~~LRNGV~LAkL~~~f~PD~~~~~~~~---------- 93 (1401)
T KOG2128|consen 28 MDERREQNVAYEYLCRVEEAKRWIEECLGE-DLPP---TTELEEGLRNGVYLAKLGQFFAPDLEQTIYKA---------- 93 (1401)
T ss_pred HHHHHHHhHHHHHHHhHHHHHHHHHHHhcc-cCCC---chHHHHHhhhhhHHHHHHhhcCCcceeeeeec----------
Confidence 333477888999999999999999999999 7863 56999999999999999999999877666531
Q ss_pred CCCCCcchhhhhHHHHHHHHHHCCCCC---ccCCCCcccccccCChhHHHHHHHHHHHhHH
Q 037959 91 SQPPPAYQYFENVRNFLVAVEELKLPA---FEASDLERDTLEAGSAAKIVDCILSLKSYHE 148 (222)
Q Consensus 91 ~~~~~~F~~~ENI~~FL~ac~~lGv~~---Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r~~~ 148 (222)
....|++.+||..|++|..++|+|. ||+.|+ |++||++ |+.||++|+.+.-
T Consensus 94 --~~~~frHtdNi~q~~~~me~iglP~iF~~E~~Dv----y~~kN~p-~i~cihaLs~~l~ 147 (1401)
T KOG2128|consen 94 --NDLHFRHTDNINQWLRAMESIGLPEIFYPETTDV----YEGKNIP-VIYCIHALSLYLF 147 (1401)
T ss_pred --CCceeecchhHHHHHHHHhhcCCCcccccchhhh----hcCCCCc-eeeHHHHHHHHHh
Confidence 2345999999999999999999994 899999 9999999 9999999998864
No 6
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.73 E-value=6.8e-18 Score=126.57 Aligned_cols=99 Identities=26% Similarity=0.412 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCccccccCCccccccCCCCCCCCcchhhhhHHHH
Q 037959 27 RFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENVRNF 106 (222)
Q Consensus 27 ~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~kI~~~ps~~~~~~~~~~~~~~F~~~ENI~~F 106 (222)
++++.+|++..++. ..+ ....+|.+.|+||++||+|+|.+.|+.+++....+ +...|++++||+.|
T Consensus 2 ~~~l~~Win~~l~~-~~~--~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~~-----------~~~~~~~~~Ni~~~ 67 (103)
T smart00033 2 EKTLLRWVNSLLAE-YGK--PPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVNA-----------SLSRFKKIENINLA 67 (103)
T ss_pred hHHHHHHHHHHccc-CCC--CcHHHHHHHHccHHHHHHHHHHHCCCcCChhhccc-----------cccHHHHHHhHHHH
Confidence 67899999999987 321 45789999999999999999999999997664321 25679999999999
Q ss_pred HHHHHHCCCC--CccCCCCccccccc-CChhHHHHHHHHH
Q 037959 107 LVAVEELKLP--AFEASDLERDTLEA-GSAAKIVDCILSL 143 (222)
Q Consensus 107 L~ac~~lGv~--~Fe~~DL~~~~~e~-kn~~~Vv~cL~aL 143 (222)
+++|+++|.. .|+++|| +++ +++..|+.||+.+
T Consensus 68 l~~~~~~g~~~~~~~~~Dl----~~~~k~~~~v~~~l~~~ 103 (103)
T smart00033 68 LSFAEKLGGKLVLFEPEDL----VEGNKLILGVIWTLILL 103 (103)
T ss_pred HHHHHHcCCeeeccCHHHH----hhcchHHHHHHHHHHhC
Confidence 9999999963 6999999 998 7999999999763
No 7
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.67 E-value=1.4e-16 Score=120.54 Aligned_cols=106 Identities=28% Similarity=0.505 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCccccccCCccccccCCCCCCCCcchhhhhHHHH
Q 037959 27 RFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENVRNF 106 (222)
Q Consensus 27 ~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~kI~~~ps~~~~~~~~~~~~~~F~~~ENI~~F 106 (222)
|.++..||+.+++..+ ......+|.+.|+||++||+|+|.+.|+.++.-...|. ..+.|.+++||..|
T Consensus 1 e~~ll~Win~~l~~~~--~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~----------~~~~~~~~~Ni~~~ 68 (108)
T PF00307_consen 1 EKELLKWINSHLEKYG--KGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPN----------LKSPFDKLENIELA 68 (108)
T ss_dssp HHHHHHHHHHHHTTST--TTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTS----------SSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHccccc--CCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhcccc----------chhhhHHHHHHHHH
Confidence 5789999999998631 11234599999999999999999999998743221221 12679999999999
Q ss_pred HHHHHH-CCCC-CccCCCCcccccccCChhHHHHHHHHHHHhHH
Q 037959 107 LVAVEE-LKLP-AFEASDLERDTLEAGSAAKIVDCILSLKSYHE 148 (222)
Q Consensus 107 L~ac~~-lGv~-~Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r~~~ 148 (222)
+++|++ +|++ .++++|| ++.+|...|+.+|.+|.++.+
T Consensus 69 l~~~~~~lg~~~~~~~~dl----~~~~~~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 69 LEAAEKKLGIPPLLSPEDL----VEKGDEKSVLSFLWQLFRYFE 108 (108)
T ss_dssp HHHHHHHTTSSCTS-HHHH----HSTT-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCHHHH----HHCcCHHHHHHHHHHHHHHHC
Confidence 999998 9999 5899999 989999999999999998753
No 8
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=99.64 E-value=3.7e-16 Score=150.21 Aligned_cols=107 Identities=21% Similarity=0.392 Sum_probs=91.9
Q ss_pred HHHHHHHHHhhCCCCCCC-------CCCHhHHHHHchhhHHHHHHHHhhCCCCc--cccccCCccccccCCCCCCCCcch
Q 037959 28 FEAAEWLENLVGPLGVSS-------EPSEREFISCLRNGLILCNAINKINPGTV--TKVVENSSYIQSFSRESQPPPAYQ 98 (222)
Q Consensus 28 ~e~~~WI~~llg~~~lp~-------~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v--~kI~~~ps~~~~~~~~~~~~~~F~ 98 (222)
.+|+.||..+ .+ +|. .+..-+|.++|||||+||+|+|.|.|++| ++|+..|. .++|.
T Consensus 5 rqCarWLidc-kV--Lptnhrvtw~~a~v~dlAq~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQ-----------mSqFL 70 (865)
T KOG2996|consen 5 RQCARWLIDC-KV--LPTNHRVTWDSAQVFDLAQALRDGVLLCQLLNNLVPHSIDLKEINLRPQ-----------MSQFL 70 (865)
T ss_pred HHHHHHHhhc-cc--cCCCcccccCcchHHHHHHHHhhhhHHHHHHhhcCCCcccHHHhhcCCC-----------ccchh
Confidence 5799999998 33 222 24567999999999999999999999998 68887553 68899
Q ss_pred hhhhHHHHHHHHH-HCCCC---CccCCCCcccccccCChhHHHHHHHHHHHhHHHhhc
Q 037959 99 YFENVRNFLVAVE-ELKLP---AFEASDLERDTLEAGSAAKIVDCILSLKSYHEWKQM 152 (222)
Q Consensus 99 ~~ENI~~FL~ac~-~lGv~---~Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r~~~~k~~ 152 (222)
|..||+.||.+|. .+|+. +|++.|| |+-+++.+|+.||..|++...+...
T Consensus 71 ClkNIrtFl~~C~~~Fglr~seLF~afDL----fdv~dFgKVi~tlS~LS~t~ial~r 124 (865)
T KOG2996|consen 71 CLKNIRTFLMFCCEKFGLRDSELFEAFDL----FDVRDFGKVIKTLSRLSHTPIALNR 124 (865)
T ss_pred hHhhHHHHHHHHHHHhCCchhhhcchhhh----hhhhhHHHHHHHHHHhccChHHHhc
Confidence 9999999999995 69998 6999999 9999999999999999998776543
No 9
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.63 E-value=3.9e-16 Score=150.61 Aligned_cols=111 Identities=20% Similarity=0.329 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCccccccCCccccccCCCCCCCCcchhh
Q 037959 21 EESAWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYF 100 (222)
Q Consensus 21 ~e~~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~kI~~~ps~~~~~~~~~~~~~~F~~~ 100 (222)
+|...+..++++-|+.-+.. .+ .+||..+|.||||||+|+|.|+|.+|+.|+. |+|.+ ...+.-+|+
T Consensus 572 ~eE~eL~~QLRk~iEtRLk~-sL-----p~Dl~aALtDGViLChLaN~lRPRSV~SIHV-PSPaV------~klsmarcr 638 (722)
T KOG0532|consen 572 REEKELMLQLRKLIETRLKV-SL-----PEDLAAALTDGVILCHLANHLRPRSVASIHV-PSPAV------PKLSMARCR 638 (722)
T ss_pred hHHHHHHHHHHHHHHHHhcc-cC-----chhHHHHhhcchhhHhhhcccCCCCccceec-CCCcc------chhHHHHHH
Confidence 45556666777777777665 44 4799999999999999999999999999997 66542 135677999
Q ss_pred hhHHHHHHHHHHCCCC---CccCCCCccccccc--CChhHHHHHHHHHHHhHH
Q 037959 101 ENVRNFLVAVEELKLP---AFEASDLERDTLEA--GSAAKIVDCILSLKSYHE 148 (222)
Q Consensus 101 ENI~~FL~ac~~lGv~---~Fe~~DL~~~~~e~--kn~~~Vv~cL~aL~r~~~ 148 (222)
.||.+||+|||++||| ++.+.|+ +.+ +++++|+.+++.++..+.
T Consensus 639 rNVdnFLeaCRkiGVpEa~lCS~~Di----lq~~~r~~rk~~~t~~~~~~~a~ 687 (722)
T KOG0532|consen 639 RNVDNFLEACRKIGVPEADLCSPMDI----LQKIERNPRKVARTVLTVGKKAQ 687 (722)
T ss_pred HhHHHHHHHHHHcCCChHhhcCHHHh----hhhhcccchhHHHHHHhhccccC
Confidence 9999999999999999 5899999 666 999999999999887653
No 10
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.65 E-value=2.6e-08 Score=95.76 Aligned_cols=107 Identities=15% Similarity=0.241 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHhhCCC-----CCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCcc--ccccCCccccccCCCCCCCCcc
Q 037959 25 WRRFEAAEWLENLVGPL-----GVSSEPSEREFISCLRNGLILCNAINKINPGTVT--KVVENSSYIQSFSRESQPPPAY 97 (222)
Q Consensus 25 ~r~~e~~~WI~~llg~~-----~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~--kI~~~ps~~~~~~~~~~~~~~F 97 (222)
..+..+..||++.++.. -+|.+|...+|++.++|||+||+|||.-.|++|. .|+... ....|
T Consensus 119 eEk~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~kk-----------~Lnp~ 187 (627)
T KOG0046|consen 119 EEKRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINTKK-----------KLNPF 187 (627)
T ss_pred HHHHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhccCC-----------cCChh
Confidence 34567899999999762 3788899999999999999999999999999995 355321 37889
Q ss_pred hhhhhHHHHHHHHHHCCCCC--ccCCCCcccccccCChhHHHHHHHHHHHhH
Q 037959 98 QYFENVRNFLVAVEELKLPA--FEASDLERDTLEAGSAAKIVDCILSLKSYH 147 (222)
Q Consensus 98 ~~~ENI~~FL~ac~~lGv~~--Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r~~ 147 (222)
.+.||.+.-|..|+.+|+.. +-+.|| .|++. --|+--|+++-++.
T Consensus 188 ~~~EN~~l~lnSAkAiGc~VvNIga~Dl----~eGrp-hLVLGLiwQiIkig 234 (627)
T KOG0046|consen 188 ERNENLNLALNSAKAIGCTVVNIGAQDL----AEGRP-HLVLGLIWQIIKIG 234 (627)
T ss_pred hhccchhhHHhhcccccceEEecCchhh----hcCCc-eeeHHHHHHHHHHH
Confidence 99999999999999999884 899999 88774 24555556655543
No 11
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=98.42 E-value=2.5e-07 Score=69.77 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=56.0
Q ss_pred CCCHhHHHHHchhhHHHHHHHHhhCCCCcc--ccccCCccccccCCCCCCCCcchhhhhHHHHHHHHH-HCCCC--CccC
Q 037959 46 EPSEREFISCLRNGLILCNAINKINPGTVT--KVVENSSYIQSFSRESQPPPAYQYFENVRNFLVAVE-ELKLP--AFEA 120 (222)
Q Consensus 46 ~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~--kI~~~ps~~~~~~~~~~~~~~F~~~ENI~~FL~ac~-~lGv~--~Fe~ 120 (222)
.+..+||...|+||.+||.|++...|+.++ .|..++ ..+.+.+..|+..|..+|. ++|.. .+++
T Consensus 10 ~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~-----------~mS~~~~l~N~~ll~~~c~~~l~~~~~~l~~ 78 (85)
T PF11971_consen 10 FPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKT-----------TMSQADSLYNLQLLNSFCQSHLGFSCCHLEP 78 (85)
T ss_pred CcchhhhhhhhccHHHHHHHHHHhCcceecHhHccccc-----------chHHHHhhhhHHHHHHHHHHHcCCCcCcCCH
Confidence 467899999999999999999999999985 455433 2678999999999999995 58887 3678
Q ss_pred CCC
Q 037959 121 SDL 123 (222)
Q Consensus 121 ~DL 123 (222)
+||
T Consensus 79 edl 81 (85)
T PF11971_consen 79 EDL 81 (85)
T ss_pred HHH
Confidence 887
No 12
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=98.18 E-value=8.8e-06 Score=78.69 Aligned_cols=103 Identities=21% Similarity=0.376 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCcc--ccccCCccccccCCCCCCCCcchhhhhHH
Q 037959 27 RFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVT--KVVENSSYIQSFSRESQPPPAYQYFENVR 104 (222)
Q Consensus 27 ~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~--kI~~~ps~~~~~~~~~~~~~~F~~~ENI~ 104 (222)
+.-++.||+++ |. .|...++++-|+||.||-++..+|.||.|. +++..|+|. ...|+..||.+
T Consensus 390 er~fr~WmNSl-gv-----~p~vn~~f~Dl~dglVllq~~dki~pg~Vnwk~vnKp~~~~---------~~~~kklENcN 454 (627)
T KOG0046|consen 390 ERTFRLWMNSL-GV-----NPYVNNLFEDLRDGLVLLQLYDKVSPGSVNWKHVNKPPSPL---------KMPFKKVENCN 454 (627)
T ss_pred HHHHHHHHHhc-CC-----cHHHHHHHHhhhhhhHHHHHHHHccCCccchhhccCCCCcc---------cccHHHhhcch
Confidence 34478999999 66 367889999999999999999999999984 455443322 45599999999
Q ss_pred HHHHHHHHCCCCC--ccCCCCcccccccCChhHHHHHHHHHHHhHHH
Q 037959 105 NFLVAVEELKLPA--FEASDLERDTLEAGSAAKIVDCILSLKSYHEW 149 (222)
Q Consensus 105 ~FL~ac~~lGv~~--Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r~~~~ 149 (222)
.-++--+.++.++ ....|| ++ +|-.-.+.-+++|+|+.-.
T Consensus 455 yav~lGk~~~FSLVgi~G~DI----~d-GNk~LtLAlvWQLMR~ytL 496 (627)
T KOG0046|consen 455 YAVKLGKQLKFSLVGIAGQDI----VD-GNKTLTLALVWQLMRRYTL 496 (627)
T ss_pred HHHHHHhhcceeeeccccccc----cc-cchHhHHHHHHHHHHHHHH
Confidence 9999888888874 889999 77 5666677778899987543
No 13
>PF06395 CDC24: CDC24 Calponin; InterPro: IPR010481 This is a calponin homology domain.
Probab=97.44 E-value=0.00038 Score=53.11 Aligned_cols=82 Identities=24% Similarity=0.352 Sum_probs=60.2
Q ss_pred HhHHHHHchhhHHHHHHHHhhCCCCccccccCCccccccCCCCCCCCcchhhhhHHHHHHHHH-HCCCC---CccCCCCc
Q 037959 49 EREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENVRNFLVAVE-ELKLP---AFEASDLE 124 (222)
Q Consensus 49 ~~~f~~~LrDGvvLC~LiN~l~Pg~v~kI~~~ps~~~~~~~~~~~~~~F~~~ENI~~FL~ac~-~lGv~---~Fe~~DL~ 124 (222)
...+...+|-|.=||.+.|.++|..--.|+...+ ...=.+...|-.||.||+ ++|++ .|..+||-
T Consensus 3 Vt~LW~~fr~G~PLc~lfNal~p~~~L~v~~~~~-----------~~~k~~K~ai~~Fi~ack~~L~~~~~e~FtIsdl~ 71 (89)
T PF06395_consen 3 VTQLWKLFRQGYPLCVLFNALQPEEPLPVDPVSS-----------DDLKVCKKAIYKFIQACKQELGFPDEELFTISDLY 71 (89)
T ss_pred HHHHHHHHhCcCcHHHHHHccCCccCCCCCCCCc-----------chHHHHHHHHHHHHHHHHHhcCCCccceeeeeccc
Confidence 4679999999999999999999975334432111 222357889999999995 69999 59999993
Q ss_pred ccccccCChhHHHHHHHHH
Q 037959 125 RDTLEAGSAAKIVDCILSL 143 (222)
Q Consensus 125 ~~~~e~kn~~~Vv~cL~aL 143 (222)
.+ +...+.||+.++..|
T Consensus 72 ~~--dT~gfvKVi~~V~~v 88 (89)
T PF06395_consen 72 GD--DTNGFVKVIKVVNRV 88 (89)
T ss_pred cC--CCcchhhHHHHHHhh
Confidence 21 245588888877543
No 14
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=96.69 E-value=0.0089 Score=65.13 Aligned_cols=100 Identities=18% Similarity=0.316 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCccccccCCccccccCCCCCCCCcchhh
Q 037959 21 EESAWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYF 100 (222)
Q Consensus 21 ~e~~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~kI~~~ps~~~~~~~~~~~~~~F~~~ 100 (222)
|..+-+++.+.+|+++.++..+. ...|++.-|+||+.|.+|...|.-..++|-+. ......|.
T Consensus 44 ERe~vQKKTFTKWvNShL~rv~c----~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtr-------------GRMRIH~L 106 (2473)
T KOG0517|consen 44 EREAVQKKTFTKWVNSHLARVSC----RIGDLYTDLRDGIMLLKLLEVLSGERLPKPTR-------------GRMRIHCL 106 (2473)
T ss_pred HHHHHHHHhHHHHHHHHHHHhcc----hhHHHHHHHhhhHHHHHHHHHHccccCCCCCC-------------CceeehhH
Confidence 44566888999999999976433 45799999999999999999997766665432 25677899
Q ss_pred hhHHHHHHHHHHCCCC--CccCCCCcccccccCChhHHHHHHHH
Q 037959 101 ENVRNFLVAVEELKLP--AFEASDLERDTLEAGSAAKIVDCILS 142 (222)
Q Consensus 101 ENI~~FL~ac~~lGv~--~Fe~~DL~~~~~e~kn~~~Vv~cL~a 142 (222)
||+..-|++.++-.|+ ..-+.|+ ++ +|-.-++--|+.
T Consensus 107 ENvdKaLqFLkeqkVhLEniGshDI----VD-GN~rL~LGLIWT 145 (2473)
T KOG0517|consen 107 ENVDKALQFLKEQKVHLENIGSHDI----VD-GNHRLILGLIWT 145 (2473)
T ss_pred hhhHHHHHHHHhcccccccCCcccc----cC-CcchhhHHHHHH
Confidence 9999999999987766 3677777 66 454444444443
No 15
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=95.54 E-value=0.017 Score=56.01 Aligned_cols=85 Identities=18% Similarity=0.312 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCcc-ccccCCccccccCCCCCCCCcchhhhh
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVT-KVVENSSYIQSFSRESQPPPAYQYFEN 102 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~-kI~~~ps~~~~~~~~~~~~~~F~~~EN 102 (222)
...+..+..|=...+|. -.| +.+..+|...-|||.++|+|||.-.|+++. .+..-+ ..+.+...|++.||
T Consensus 124 lt~~~~lllwc~~~t~~-y~p-~vd~~df~rswrdGLaf~aLIh~~rPDtld~n~ld~q-------kknk~~n~~qafe~ 194 (612)
T COG5069 124 LTKHINLLLWCDEDTGG-YKP-EVDTFDFFRSWRDGLAFSALIHDSRPDTLDPNVLDLQ-------KKNKALNNFQAFEN 194 (612)
T ss_pred HHhhhhhheeccccccC-cCC-CccHHHHHHHhhhhHHHHHHHhhcCCcccCccccchh-------hcccchhHHHHHHH
Confidence 33444455555555555 344 467789999999999999999999999763 333211 11224678999999
Q ss_pred HHHHHHHHHHCCCCC
Q 037959 103 VRNFLVAVEELKLPA 117 (222)
Q Consensus 103 I~~FL~ac~~lGv~~ 117 (222)
-+.||...|.+|+-.
T Consensus 195 a~k~Igi~rli~ved 209 (612)
T COG5069 195 ANKVIGIARLIGVED 209 (612)
T ss_pred HHHhhchHhhcCcce
Confidence 999999999999763
No 16
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=90.96 E-value=0.25 Score=41.11 Aligned_cols=96 Identities=14% Similarity=0.272 Sum_probs=55.2
Q ss_pred HHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCccccccCCccccccCCCCCCCCcchhhhhHHHH-HH
Q 037959 30 AAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENVRNF-LV 108 (222)
Q Consensus 30 ~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~kI~~~ps~~~~~~~~~~~~~~F~~~ENI~~F-L~ 108 (222)
+..||.++ .. .. ...++...+.||++++.++.+.+|..|.--+..+. .+.-..+.|=..| -+
T Consensus 1 l~~WL~~l-~l-s~----~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~~~-----------~s~~~Kl~NW~~Ln~k 63 (158)
T PF06294_consen 1 LLKWLQSL-DL-SR----PPKNIRRDFSDGYLVAEILSRYYPKLVDLHNYSNG-----------NSVAQKLNNWETLNEK 63 (158)
T ss_dssp HHHHHHHS----S------SS-HHHHHTTSHHHHHHHHHH-TTT---SS---------------SSHHHHHHHHHHHHHH
T ss_pred ChHHHhcC-CC-CC----CCCchHHHcccccHHHHHHHHHCCCCccccccCCC-----------CCHHHHHHHHHHHHHH
Confidence 46899994 33 22 23689999999999999999999998865543221 3344678999999 88
Q ss_pred HHHHCCCCCccCCCCcccccc--cCChhHHHHHHHHHH
Q 037959 109 AVEELKLPAFEASDLERDTLE--AGSAAKIVDCILSLK 144 (222)
Q Consensus 109 ac~~lGv~~Fe~~DL~~~~~e--~kn~~~Vv~cL~aL~ 144 (222)
..+.+|++ |...++++ ... .+-...++..|...-
T Consensus 64 vl~kl~~~-l~~~~i~~-i~~~~~Gaae~lL~~L~~~l 99 (158)
T PF06294_consen 64 VLKKLGIK-LDKEDIEG-IINCKPGAAESLLYQLYTKL 99 (158)
T ss_dssp TTGGGT-----HHHHHH-HHTT-TTTTHHHHHHHHHHH
T ss_pred HHHHcCCC-CCHHHHHH-HHhCCCCHHHHHHHHHHHHH
Confidence 88999986 33333211 022 223445666666555
No 17
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton]
Probab=90.08 E-value=1.8 Score=39.78 Aligned_cols=112 Identities=19% Similarity=0.253 Sum_probs=78.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCccccccCCccccccCCCCCCCC
Q 037959 16 ASRKAEESAWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPP 95 (222)
Q Consensus 16 a~rka~e~~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~kI~~~ps~~~~~~~~~~~~~ 95 (222)
.||+--.......-+.+||++.+-.-.| -...+.+-|-||.||-+|..++.-- |++.... ..+
T Consensus 81 ~sr~DpK~~el~kvLi~WiN~~L~~erI----vVr~LeEDlfDGqilqkL~ekL~~~---klev~ev----------tqs 143 (365)
T KOG3631|consen 81 TSRKDPKFEELVKVLIDWINDVLVPERI----VVRSLEEDLFDGQILQKLFEKLAAL---KLEVAEV----------TQS 143 (365)
T ss_pred ccccChhHHHHHHHHHHHHHHhhcchhh----hHHhhHHhhhhhHHHHHHHHHHHhh---hccchhh----------hhh
Confidence 3444444555667789999999754233 4678999999999999999998532 2221000 123
Q ss_pred cchhhhhHHHHHHHH-HHCCCCCcc---CCCCcccccccCChhHHHHHHHHHHHhHH
Q 037959 96 AYQYFENVRNFLVAV-EELKLPAFE---ASDLERDTLEAGSAAKIVDCILSLKSYHE 148 (222)
Q Consensus 96 ~F~~~ENI~~FL~ac-~~lGv~~Fe---~~DL~~~~~e~kn~~~Vv~cL~aL~r~~~ 148 (222)
.--++.-+..-|+++ +.++.|.-+ ..|+ +.+||+..++.-|.+|+.+..
T Consensus 144 e~~QkqKLq~Vleavnr~L~~~~~q~kWsvds----Ih~Kdl~ailhLLVaLa~~fr 196 (365)
T KOG3631|consen 144 EIGQKQKLQTVLEAVNRSLQLPEWQAKWSVDS----IHNKDLVAILHLLVALAKHFR 196 (365)
T ss_pred hHHHHHHHHHHHHHHHHHhcCchhhhccchhh----hccchHHHHHHHHHHHHHHcC
Confidence 334667777788888 679998432 4566 788999999999999998754
No 18
>cd08539 SAM_PNT-ESE-3-like Sterile alpha motif (SAM)/Pointed domain of ESE-3 like ETS transcriptional regulators. SAM Pointed domain of ESE-3-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. The ESE-3 transcriptional activator is involved in regulation of glandular epithelium differentiation through the MAP kinase signaling cascade. It is found to be expressed in glandular epithelium of prostate, pancreas, salivary gland, and trachea. Additionally, ESE-3 is differentially expressed during monocyte-derived dendritic cells development. DNA binding consensus motif for ESE-3 consists of purine-rich GGAA/T core sequence. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=75.35 E-value=1.8 Score=31.99 Aligned_cols=42 Identities=26% Similarity=0.460 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHH
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAIN 67 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN 67 (222)
.+-+.++.+||.-.+....++ +...+|....-||--||.+.-
T Consensus 7 ~Wtk~~V~~WL~~~~~~~~~~--~~~i~~~~F~MnG~~LC~ms~ 48 (74)
T cd08539 7 YWTKYQVWEWLQHLLDTNQLD--ASCIPFQEFDINGEHLCSMSL 48 (74)
T ss_pred hCCHHHHHHHHHHHHHHcCCC--cccccHHHcCCChHHHHccCH
Confidence 356889999999996664442 455689999999999998744
No 19
>KOG3000 consensus Microtubule-binding protein involved in cell cycle control [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=72.15 E-value=13 Score=34.30 Aligned_cols=78 Identities=19% Similarity=0.370 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCcc--ccccCCccccccCCCCCCCCcchhhhhH
Q 037959 26 RRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVT--KVVENSSYIQSFSRESQPPPAYQYFENV 103 (222)
Q Consensus 26 r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~--kI~~~ps~~~~~~~~~~~~~~F~~~ENI 103 (222)
-+.|+..|+++++.. ++ .-.+-|..|-.-|+++..+.|+.|+ ++.-. +...+.+.-|-
T Consensus 16 sR~E~laW~N~~l~~-n~-------~kIEe~~tGaaycqlmd~l~p~~i~lkkVkf~------------A~~Ehe~i~Nf 75 (295)
T KOG3000|consen 16 SRLEILAWINDLLQL-NL-------TKIEELCTGAAYCQLMDMLFPPDIPLKKVKFA------------ARLEHEYIPNF 75 (295)
T ss_pred chHHHHHHHHhhhhc-ch-------hhhhhhcccchhhhhhhhccCCcccccccccc------------ccccchhhhhh
Confidence 357899999999877 32 4567889999999999999998873 55421 23445556666
Q ss_pred HHHHHHHHHCCCCC-ccCCCC
Q 037959 104 RNFLVAVEELKLPA-FEASDL 123 (222)
Q Consensus 104 ~~FL~ac~~lGv~~-Fe~~DL 123 (222)
..+-..-..+|+.. ...++|
T Consensus 76 k~lQ~~f~klgi~k~v~vdkL 96 (295)
T KOG3000|consen 76 KVLQTCFNKLGIDKVVDVDKL 96 (295)
T ss_pred HHHHHHHHhcCCcccccHHHH
Confidence 66555557788773 666666
No 20
>cd08537 SAM_PNT-ESE-1-like Sterile alpha motif (SAM)/Pointed domain of ESE-1 like ETS transcriptional regulators. SAM Pointed domain of ESE-1-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. SAM Pointed domain of ESE-1 provides a potential docking site for signaling kinase Pak1 in humans. ESE-1 factors are involved in regulation of gene expression in different types of epithelial cells. ESE-1 is expressed in many different organs including intestine, stomach, pancreas, lungs, kidneys, and prostate. The DNA binding consensus motif for ESE-1 consists of a purine-rich GGA[AT] core sequence. The expression profile of these factors is altered in epithelial cancers if compared to normal tissues. Members of this subfamily are potential targets for cancer therapy.
Probab=70.88 E-value=3.3 Score=30.96 Aligned_cols=42 Identities=26% Similarity=0.529 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHH
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAIN 67 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN 67 (222)
.+.+.++.+||.-.++...+ +....+|....-||--||.+.-
T Consensus 12 ~Wtk~qVleWL~~~~e~n~~--dl~~v~f~~F~MnG~~LC~l~~ 53 (78)
T cd08537 12 FWTKTQVLEWISYHVEKNKY--DASSIDFSRCDMDGATLCNCAL 53 (78)
T ss_pred cccHHHHHHHHHHHHHhccC--CcccCCHHHhCCchHHHHccCH
Confidence 46789999999999954223 2355689999999999998843
No 21
>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A ....
Probab=62.98 E-value=5.5 Score=26.36 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=12.9
Q ss_pred ccccccccceeeecc-eeee
Q 037959 203 GENLKLEGRLVFSTG-VFHV 221 (222)
Q Consensus 203 ~~~~~~~~~~~~~~~-~~~~ 221 (222)
.+.-+.+|||+|.+| +|.|
T Consensus 4 ~y~~~~~dELs~~~Gd~i~v 23 (49)
T PF14604_consen 4 DYEAQDPDELSFKKGDVITV 23 (49)
T ss_dssp CBCSSSTTB-EB-TTEEEEE
T ss_pred cCCCCCcCEeeEcCCCEEEE
Confidence 455567899999999 7665
No 22
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=62.28 E-value=8.8 Score=37.86 Aligned_cols=106 Identities=25% Similarity=0.214 Sum_probs=67.4
Q ss_pred HHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhC-CCCcc--ccccCCccccccCCCCCCCCcchhhhhHHHH
Q 037959 30 AAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKIN-PGTVT--KVVENSSYIQSFSRESQPPPAYQYFENVRNF 106 (222)
Q Consensus 30 ~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~-Pg~v~--kI~~~ps~~~~~~~~~~~~~~F~~~ENI~~F 106 (222)
..-|+..+ .++ |...+|+.-||||.+|-+...+.- |.+|. .++..| +++ .-...|++.||-+.-
T Consensus 384 ~Tf~l~~~----~vs--p~i~~l~gd~Rdql~~lq~l~k~l~p~tv~~~~vk~~~--asG-----~E~~rfka~en~nya 450 (612)
T COG5069 384 FTFWLNSL----DVS--PEITNLFGDLRDQLILLQALSKKLMPMTVTHKLVKKQP--ASG-----IEENRFKAFENENYA 450 (612)
T ss_pred HHHHHHHh----cCC--hhhhhhcccHHHHHHHHHHHHhhcCCceechhhhcccc--ccc-----chhhhhhhhcccchh
Confidence 35688887 232 456799999999999998877766 99884 444332 222 125679999998877
Q ss_pred HHHHHHCCCCC-----ccCCCCcccccccCChhHHHHHHHHHHHhHHHh
Q 037959 107 LVAVEELKLPA-----FEASDLERDTLEAGSAAKIVDCILSLKSYHEWK 150 (222)
Q Consensus 107 L~ac~~lGv~~-----Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r~~~~k 150 (222)
...-+.-|+.+ -+..|..+ ...+=..||+...-++-++..+|
T Consensus 451 vdlG~~~gf~~v~ik~le~~~~~r--~k~tl~~q~l~~~t~~f~h~lkk 497 (612)
T COG5069 451 VDLGITEGFSLVGIKGLEILDGIR--LKLTLVWQVLRSNTALFNHVLKK 497 (612)
T ss_pred hhhhhhcCeeeeeechhhhhhhhH--HHHHHHHHHHHHHHHHHHHHHhc
Confidence 66665555442 34444432 22223456666666666666555
No 23
>cd08203 SAM_PNT Sterile alpha motif (SAM)/Pointed domain. Sterile alpha motif (SAM)/Pointed domain is found in about 40% of transcriptional regulators of ETS family (initially named for Erythroblastosis virus, E26-E Twenty Six). SAM Pointed domain containing proteins of this family additionally have C-terminal ETS DNA-binding domain. In a few cases, SAM Pointed domain appears as a single domain protein. Members of this group are mostly involved in regulation of embryonic development and growth control in eukaryotes. SAM Pointed domains mediate protein-protein interactions. Depending on the subgroup, they can interact with other SAM Pointed domains forming homo or hetero dimers/oligomers and/or they can recruit a protein kinase to its target which can be the SAM Pointed domain containing protein itself or another protein that has no kinase docking site. Thus, SAM Pointed domains participate in transcriptional regulation and signal transduction. Some genes coding ETS family transcripti
Probab=61.97 E-value=6.3 Score=28.01 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHH
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAI 66 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~Li 66 (222)
.+-++++..||.-+..+.+|+. .....| --||.-||.+-
T Consensus 4 ~Wt~~~V~~Wl~w~~~~f~L~~-~~~~~F---~m~G~~Lc~ls 42 (66)
T cd08203 4 LWTKEHVLQWLEWAVKEFSLPP-IDFSKF---NMNGKELCLLT 42 (66)
T ss_pred hCCHHHHHHHHHHHHHhcCCCC-CChhhc---CCCHHHHHhCC
Confidence 3557899999999998877763 233344 88999999873
No 24
>cd08757 SAM_PNT_ESE Sterile alpha motif (SAM)/Pointed domain of ESE-like ETS transcriptional regulators. SAM Pointed domain of ESE-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ETS factors are important for cell differentiation. They can be involved in regulation of gene expression in different types of epithelial cells. They are expressed in salivary gland, intestine, stomach, pancreas, lungs, kidneys, colon, mammary gland, and prostate. Members of this group are proto-oncogenes. Expression profiles of these factors are altered in epithelial cancers, which makes them potential targets for cancer therapy.
Probab=58.02 E-value=4.5 Score=29.03 Aligned_cols=41 Identities=20% Similarity=0.402 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHH
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAI 66 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~Li 66 (222)
.+-+.++.+||.-...+..+|. ...++...--||--||.+-
T Consensus 4 ~Wt~~~V~~Wl~w~~~e~~l~~--~~i~~~~F~m~Gk~LC~ms 44 (68)
T cd08757 4 YWTKNDVLEWLQFVAEQNKLDA--ECISFQKFNIDGQTLCSMT 44 (68)
T ss_pred hCCHHHHHHHHHHHHHHcCCCC--CcCCccccCCCHHHHHcCC
Confidence 3567899999998876545542 2234555588999999874
No 25
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=56.56 E-value=11 Score=38.07 Aligned_cols=40 Identities=15% Similarity=0.336 Sum_probs=27.1
Q ss_pred HHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCc
Q 037959 28 FEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTV 74 (222)
Q Consensus 28 ~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v 74 (222)
.-+..||+++ +. .- +..=++.|.|||+|.++...|.|..-
T Consensus 10 ~~Lv~Wv~tf-~~-~~-----~~~~~~dL~DGv~L~evL~qIDp~~F 49 (713)
T PF05622_consen 10 DSLVTWVQTF-NL-SA-----PCSSYEDLSDGVALAEVLHQIDPEYF 49 (713)
T ss_dssp HHHHHHHTT-----SS--------SHHHHTTSHHHHHHHHHH-TTTS
T ss_pred HHHHHHHHHC-CC-CC-----CcCCHHHccchHHHHHHHHHhCcccc
Confidence 4589999985 43 22 22346789999999999999999753
No 26
>cd08535 SAM_PNT-Tel_Yan Sterile alpha motif (SAM)/Pointed domain of Tel/Yan protein. SAM Pointed domain of Tel (Translocation, Ets, Leukemia)/Yan subfamily of ETS transcriptional repressors is a protein-protein interaction domain. SAM Pointed domains of this type of regulators can interact with each other, forming head-to-tail homodimers or homooligomers, and/or interact with SAM Pointed domains of another subfamily of ETS factors forming heterodimers. The oligomeric form is able to block transcription of target genesand is involved in MAPK signaling. They participate in regulation of different processes during embryo development including hematopoietic differentiation and eye development. Tel/Yan transcriptional factors are frequent targets of chromosomal translocations resulting in fusions of SAM domain with new neighboring genes. Such chimeric proteins were found in different tumors. Members of this subfamily are potential targets for cancer therapy.
Probab=55.63 E-value=7.8 Score=27.96 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHH
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAIN 67 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN 67 (222)
.+-++++..||.-...+.++|. .+ +...-.||--||.+-.
T Consensus 5 ~Wt~~~V~~WL~wa~~ef~L~~-i~---~~~F~mnGk~LC~ls~ 44 (68)
T cd08535 5 YWSRDDVLQWLRWAENEFSLPP-ID---SNTFEMNGKALCLLTK 44 (68)
T ss_pred hCCHHHHHHHHHHHHHhcCCCC-CC---hhccCCCHHHHhcCCH
Confidence 3557899999999988877753 33 3344689999998843
No 27
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=52.93 E-value=13 Score=38.97 Aligned_cols=88 Identities=19% Similarity=0.367 Sum_probs=65.1
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCccccccCCccccccCCCCCCCCcchhhhhHHHH
Q 037959 27 RFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENVRNF 106 (222)
Q Consensus 27 ~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~kI~~~ps~~~~~~~~~~~~~~F~~~ENI~~F 106 (222)
++.+.-|=...+..-. .+...+|...-+||..+|.+++..+|..|.-+.. ...=...+|++.-
T Consensus 144 ~egllLwcq~~Ta~y~---~v~v~nF~~sw~~gl~f~A~ih~~Rpdli~~y~~--------------lt~~~~~~n~~~A 206 (890)
T KOG0035|consen 144 KEGLLLWCQRKTAPYS---NVNVQNFHTSWKDGLAFCALIHRHRPDLIDQYDK--------------LTKQDPVENLNLA 206 (890)
T ss_pred hhhhhhheecccCCcc---ccccccceecccchHHHHHHHHhcChhhhhhhhh--------------cCccchhHHhhhh
Confidence 3556667777766522 2567899999999999999999999999984432 1112468899887
Q ss_pred HHHHHH-CCCC-CccCCCCcccccccCChhH
Q 037959 107 LVAVEE-LKLP-AFEASDLERDTLEAGSAAK 135 (222)
Q Consensus 107 L~ac~~-lGv~-~Fe~~DL~~~~~e~kn~~~ 135 (222)
-..+.. +|++ +.+++|. .+......
T Consensus 207 ~~iAek~l~i~r~ld~ed~----~~~~~pde 233 (890)
T KOG0035|consen 207 FDIAEKFLGIPRLLDAEDI----VEAAIPDE 233 (890)
T ss_pred hhhhhhcCCcccccCcccc----ccCCCCch
Confidence 787865 9999 7999999 66655444
No 28
>smart00251 SAM_PNT SAM / Pointed domain. A subfamily of the SAM domain
Probab=51.55 E-value=10 Score=28.20 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHH
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAI 66 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~Li 66 (222)
.+-+.++.+||+-+..+.+++. .+|...--||.-||.+-
T Consensus 19 ~Wt~~~V~~Wl~w~~~ef~L~~----~~~~~f~m~G~~Lc~ls 57 (82)
T smart00251 19 LWTEDHVLEWLEWAVKEFSLSP----IDFSKFDMSGKELCSMS 57 (82)
T ss_pred hCCHHHHHHHHHHHHHhcCCCC----CCcccCCCCHHHHHcCC
Confidence 5778999999999998876652 24444478999999873
No 29
>cd08533 SAM_PNT-ETS-1,2 Sterile alpha motif (SAM)/Pointed domain of ETS-1,2 family. SAM Pointed domain of ETS-1,2 family of transcriptional activators is a protein-protein interaction domain. It carries a kinase docking site and mediates interaction between ETS transcriptional activators and protein kinases. This group of transcriptional factors is involved in the Ras/MAP kinase signaling pathway. MAP kinases phosphorylate the transcription factors. Phosphorylated factors then recruit coactivators and enhance transactivation. Members of this group play a role in regulation of different embryonic developmental processes. ETS-1,2 transcriptional activators are proto-oncogenes involved in malignant transformation and tumor progression. They are potential molecular targets for selective cancer therapy.
Probab=50.54 E-value=9 Score=27.95 Aligned_cols=38 Identities=21% Similarity=0.416 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHH
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNA 65 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~L 65 (222)
.+-+.+++.||.=.+.+.+|+ +.+...| -.||--||.+
T Consensus 6 ~Wt~~~V~~WL~Wa~~ef~L~-~v~~~~F---~m~Gk~LC~l 43 (71)
T cd08533 6 LWTETHVRQWLLWAVNEFSLE-GVNFQKF---CMSGRDLCAL 43 (71)
T ss_pred hCCHHHHHHHHHHHHHHcCCC-CCCcccC---CCCHHHHHcC
Confidence 456789999999998887665 2333334 7889999987
No 30
>cd08532 SAM_PNT-PDEF-like Sterile alpha motif (SAM)/Pointed domain of prostate-derived ETS factor. SAM Pointed domain of PDEF-like (Prostate-Derived ETS Factor) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. In human males this activator is highly expressed in the prostate gland and enhances androgen-mediated activation of the PSA promoter though interaction with the DNA binding domain of androgen receptor. PDEF may play a role in prostate cancer development as well as in goblet cell formation and mucus production in the epithelial lining of respiratory and intestinal tracts.
Probab=49.87 E-value=9.3 Score=28.20 Aligned_cols=38 Identities=18% Similarity=0.226 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHH
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAI 66 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~Li 66 (222)
.+-+++++.||+-...+.+|+. ++...--||.-||.+-
T Consensus 12 ~Ws~~~V~~WL~w~~~ef~L~~-----~~~~F~mnG~~LC~ls 49 (76)
T cd08532 12 QWSPANVQKWLLWTEHQYRLPP-----PPRCFELNGKDLCALS 49 (76)
T ss_pred hcCHHHHHHHHHHHHHHhCCCC-----chhcCCCCHHHHHcCC
Confidence 4667899999999999877752 4555588999999873
No 31
>cd08538 SAM_PNT-ESE-2-like Sterile alpha motif (SAM)/Pointed domain of ESE-2 like ETS transcriptional regulators. SAM Pointed domain of ESE-2-like (Epithelium-Specific ETS) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It can act as a major transactivator by providing a potential docking site for co-activators. ESE-2 factors are involved in regulation of gene expression in a variety of epithelial (glandular and secretory) cells. ESE-2 mRNA was found in skin keratinocytes, salivary gland, mammary gland, stomach, prostate, and kidneys. The DNA binding consensus motif for ESE-2 consists of a GGA core and AT-rich flanks. The expression profiles of these factors are altered in epithelial cancers. Members of this subfamily are potential targets for cancer therapy.
Probab=49.85 E-value=11 Score=27.98 Aligned_cols=42 Identities=21% Similarity=0.391 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHH
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAIN 67 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN 67 (222)
.+-+.++.+||.-.+.+..|+ +...+|...--||--||++..
T Consensus 9 ~Ws~~~V~~WL~Wav~ef~L~--~~~i~~~~f~m~Gk~LC~ms~ 50 (78)
T cd08538 9 YWTKRHVWEWLQFCCDQYKLD--ANCISFCHFNISGLQLCSMTQ 50 (78)
T ss_pred ccCHHHHHHHHHHHHHHcCCC--ccccchhhcCCCHHHHHcCCH
Confidence 356789999999999887774 333577777999999998843
No 32
>cd08536 SAM_PNT-Mae Sterile alpha motif (SAM)/Pointed domain of Mae protein homolog. Mae (Modulator of the Activity of ETS) subfamily represents a group of SAM Pointed monodomain proteins. SAM Pointed domain is a protein-protein interaction domain. It can interact with other SAM pointed domains forming head-to-tail heterodimers and also provides a kinase docking site. For example, in Drosophila Mae is required for facilitating phosphorylation of the Yan factor and for blocking phosphorylation of the ETS-2 regulator. Mae interacts with the SAM Pointed domains of Yan and ETS-2. Binding enhances access of the kinase to the Yan phosphorylation site by providing a kinase docking site, or inhibits phosphorylation of ETS-2 by blocking its docking site. This type of factors participates in regulation of kinase signaling particularly during embryogenesis.
Probab=47.97 E-value=14 Score=26.48 Aligned_cols=38 Identities=26% Similarity=0.439 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHH
Q 037959 25 WRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAI 66 (222)
Q Consensus 25 ~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~Li 66 (222)
+-+.+++.|+.-+..+.+|+. .+...| -.||--||.+-
T Consensus 5 Ws~~~V~~WL~w~~~ef~L~~-~~~~~F---~m~Gk~LC~ls 42 (66)
T cd08536 5 WSREHVRTWLRWVSARYQLEV-VDLDKF---LMNGKGLCLMS 42 (66)
T ss_pred CCHHHHHHHHHHHHHHhCCCC-CCcccc---CCCHHHHHcCC
Confidence 457889999999998877763 334455 46999999873
No 33
>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....
Probab=47.96 E-value=11 Score=24.32 Aligned_cols=20 Identities=20% Similarity=0.297 Sum_probs=14.5
Q ss_pred cccccccccceeeecc-eeee
Q 037959 202 NGENLKLEGRLVFSTG-VFHV 221 (222)
Q Consensus 202 ~~~~~~~~~~~~~~~~-~~~~ 221 (222)
+.|..+..|+|+|.+| +|+|
T Consensus 4 ydf~~~~~~eLs~~~Gd~i~v 24 (48)
T PF00018_consen 4 YDFDAEDPDELSFKKGDIIEV 24 (48)
T ss_dssp SCBETSSTTBSEB-TTEEEEE
T ss_pred eeeCCCCCCEEeEECCCEEEE
Confidence 3455666899999999 7766
No 34
>cd08531 SAM_PNT-ERG_FLI-1 Sterile alpha motif (SAM)/Pointed domain of ERG (Ets related gene) and FLI-1 (Friend leukemia integration 1) transcription factors. SAM Pointed domain of ERG/FLI-1 subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The ERG and FLI regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. They are proto-oncogenes implicated in cancer development such as myeloid leukemia, Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=45.58 E-value=10 Score=27.89 Aligned_cols=38 Identities=26% Similarity=0.488 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHH-chhhHHHHHH
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISC-LRNGLILCNA 65 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~-LrDGvvLC~L 65 (222)
.+-+++++.||.=+..+.+|+. . ++..- --||.-||.+
T Consensus 7 ~Wt~~~V~~WL~Wa~~ef~L~~-i---~~~~F~~m~Gk~LC~l 45 (75)
T cd08531 7 LWTREHVRQWLEWAVKEYGLQD-V---DVSRFQNIDGKELCKM 45 (75)
T ss_pred hcCHHHHHHHHHHHHHHcCCCC-C---ChhhccCCChHHHHcC
Confidence 4567899999999998877752 3 44444 5789999987
No 35
>cd08534 SAM_PNT-GABP-alpha Sterile alpha motif (SAM)/Pointed domain of GA-binding protein alpha chain. SAM Pointed domain of GABP-alpha subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. This type of transcriptional regulators forms heterotetramers containing two alpha and two beta subunits. It interacts with GA repeats (purine rich repeats). GABP transcriptional factors control gene expression in cell cycle control, apoptosis, and cellular respiration. GABP participates in regulation of transmembrane receptors and key hormones especially in myeloid cells and at the neuromuscular junction.
Probab=43.17 E-value=17 Score=27.64 Aligned_cols=38 Identities=16% Similarity=0.365 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHH
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNA 65 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~L 65 (222)
.|-+.++..||.-...+.+|+. .+...| -.||--||.|
T Consensus 21 ~Wt~~~V~~WL~Wa~~ef~L~~-v~~~~F---~m~Gk~LC~L 58 (89)
T cd08534 21 EWTEDQVLHWVVWAVKEFSLTD-IDLSDW---NITGRELCSL 58 (89)
T ss_pred HcCHHHHHHHHHHHHHHcCCCC-CChhhc---CCCHHHHhcC
Confidence 5778999999999999877762 333344 5699999987
No 36
>cd08541 SAM_PNT-FLI-1 Sterile alpha motif (SAM)/Pointed domain of friend leukemia integration 1 transcription activator. SAM Pointed domain of FLI-1 (Friend Leukemia Integration) subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. The FLI-1 protein participates in regulation of cellular differentiation, proliferation, and survival. The Fli-1 gene was initially described in Friend virus-induced erythroleukemias as a site for virus integration. It is highly expressed in hematopoietic tissues and at lower level in lungs, heart, and ovaries. Fli-1 is a proto-oncogene implicated in Ewing's sarcoma and erythroleukemia. Members of this subfamily are potential targets for cancer therapy.
Probab=42.97 E-value=17 Score=27.89 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHc-hhhHHHHHH
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISCL-RNGLILCNA 65 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~L-rDGvvLC~L 65 (222)
.|-+++++.||.=+..+.+|+ +. ++..-- .||.-||.|
T Consensus 19 ~Wt~~hV~~WL~Wa~~ef~L~-~v---d~~~F~~m~Gk~LC~L 57 (91)
T cd08541 19 LWTQEHVRQWLEWAIKEYGLM-EI---DTSFFQNMDGKELCKM 57 (91)
T ss_pred hcCHHHHHHHHHHHHHHcCCC-CC---ChhhccCCCHHHHHhC
Confidence 577899999999999887775 23 344443 689999987
No 37
>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....
Probab=42.39 E-value=18 Score=24.00 Aligned_cols=19 Identities=26% Similarity=0.286 Sum_probs=12.5
Q ss_pred ccccccccceeeecc-eeee
Q 037959 203 GENLKLEGRLVFSTG-VFHV 221 (222)
Q Consensus 203 ~~~~~~~~~~~~~~~-~~~~ 221 (222)
++.....++|+|.+| +|.|
T Consensus 7 d~~~~~~~~Ls~~~Gd~i~v 26 (55)
T PF07653_consen 7 DYVAEDPDELSFKKGDVIEV 26 (55)
T ss_dssp SBESSSTTB-EB-TTEEEEE
T ss_pred EECCCCCCceEEecCCEEEE
Confidence 444566788999999 7776
No 38
>cd08540 SAM_PNT-ERG Sterile alpha motif (SAM)/Pointed domain of ERG transcription factor. SAM Pointed domain of ERG subfamily of ETS transcriptional regulators is a putative protein-protein interaction domain. It may participate in formation of homodimers or heterodimers with ETS-2, Fli-1, ER81, and Pu-1. However, dimeric forms are inactive and SAM Pointed domain is not essential for dimerization, since ER81 and Pu-1 do not have it. In mouse, a regulator of this type binds the ESET histone H3-specific methyltransferase (human homolog is SETDB1), followed by modification of local chromatin structure through histone methylation. ERG regulators are involved in endothelial cell differentiation, bone morphogenesis and neural crest development. The Erg gene is a proto-oncogene. It is a target of chromosomal translocations resulting in fusions with new neighboring genes. Chimeric proteins were found in solid tumors such as myeloid leukemia or Ewing's sarcoma. Members of this subfamily are po
Probab=39.14 E-value=18 Score=26.64 Aligned_cols=38 Identities=24% Similarity=0.465 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHH-chhhHHHHHH
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISC-LRNGLILCNA 65 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~-LrDGvvLC~L 65 (222)
.+-++++++||.=+..+.+|+. . ++..- -.||.-||.|
T Consensus 7 ~Wt~~~V~~WL~Wa~~ef~L~~-~---~~~~F~~m~Gk~LC~L 45 (75)
T cd08540 7 LWSTDHVRQWLEWAVKEYGLPD-V---DVLLFQNIDGKELCKM 45 (75)
T ss_pred hcCHHHHHHHHHHHHHHhCCCC-C---CcccccCCCHHHHHhC
Confidence 4567899999999998877752 2 23333 3699999987
No 39
>cd08542 SAM_PNT-ETS-1 Sterile alpha motif (SAM)/Pointed domain of ETS-1. SAM Pointed domain of ETS-1 subfamily of ETS transcriptional activators is a protein-protein interaction domain. The ETS-1 activator is regulated by phosphorylation. It contains a docking site for the ERK2 MAP (Mitogen Activated Protein) kinase, while the ERK2 phosphorylation site is located in the N-terminal disordered region upstream of the SAM Pointed domain. Mutations of the kinase docking site residues inhibit phosphorylation. ETS-1 activators play role in a number of different physiological processes, and they are expressed during embryonic development, including blood vessel formation, hematopoietic, lymphoid, neuronal and osteogenic differentiation. The Ets-1 gene is a proto-oncogene involved in progression of different tumors (including breast cancer, meningioma, and prostate cancer). Members of this subfamily are potential molecular targets for selective cancer therapy.
Probab=38.04 E-value=17 Score=27.73 Aligned_cols=38 Identities=21% Similarity=0.488 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHH
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNA 65 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~L 65 (222)
.|-+.++..||.=...+.+++. .+..+| --||--||.|
T Consensus 21 ~Wt~~~V~~WL~Wa~~ef~L~~-i~~~~F---~m~Gk~LC~L 58 (88)
T cd08542 21 QWTETHVRDWVMWAVNEFSLKG-VDFQKF---CMNGAALCAL 58 (88)
T ss_pred hCCHHHHHHHHHHHHHHcCCCC-CCcccC---CCCHHHHHcC
Confidence 5788999999999988877652 333444 4888888877
No 40
>cd08543 SAM_PNT-ETS-2 Sterile alpha motif (SAM)/Pointed domain of ETS-2. SAM Pointed domain of ETS-2 subfamily of ETS transcriptional regulators is a protein-protein interaction domain. It contains a docking site for Cdk10 (cyclin-dependent kinase 10), a member of the Cdc2 kinase family. The interaction between ETS-2 and Cdk10 kinase inhibits ETS-2 transactivation activity in mammals. ETS-2 is also regulated by ERK2 MAP kinase. ETS-2, which is phosphorylated by ERK2, can interact with coactivators and enhance transactivation. ETS-2 transcriptional activators are involved in embryonic development and cell cycle control. The Ets-2 gene is a proto-oncogene. It is overexpressed in breast and prostate cancer cells and its overexpression is necessary for transformation of such cells. Members of ETS-2 subfamily are potential molecular targets for selective cancer therapy.
Probab=37.60 E-value=17 Score=27.72 Aligned_cols=38 Identities=24% Similarity=0.463 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHH
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNA 65 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~L 65 (222)
.|-+.++..||.=...+.+++. .+..+| --||--||.|
T Consensus 21 ~Wt~~~V~~WL~Wa~~ef~L~~-i~~~~F---~m~Gk~LC~L 58 (89)
T cd08543 21 LWTEQQVCQWLLWATNEFSLVN-VNFQQF---GMNGQELCNL 58 (89)
T ss_pred hCCHHHHHHHHHHHHHHcCCCC-CCcccC---CCChHHHHcC
Confidence 5778999999999988877752 333444 5888888877
No 41
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=35.62 E-value=17 Score=37.93 Aligned_cols=15 Identities=27% Similarity=0.605 Sum_probs=8.7
Q ss_pred ccccceeeecc-eeee
Q 037959 207 KLEGRLVFSTG-VFHV 221 (222)
Q Consensus 207 ~~~~~~~~~~~-~~~~ 221 (222)
.|+|||+|+|| +|.|
T Consensus 1065 qndDELsF~kgdiI~V 1080 (1118)
T KOG1029|consen 1065 QNDDELSFKKGDIINV 1080 (1118)
T ss_pred CCcccccccCCCEEEe
Confidence 45566666666 5544
No 42
>PF02198 SAM_PNT: Sterile alpha motif (SAM)/Pointed domain; InterPro: IPR003118 Transcription factors are protein molecules that bind to specific DNA sequences in the genome, resulting in the induction or inhibition of gene transcription []. The ets oncogene is such a factor, possessing a region of 85-90 amino acids known as the ETS (erythroblast transformation specific) domain [, ]. This domain is rich in positively-charged and aromatic residues, and binds to purine-rich segments of DNA. The ETS domain IPR000418 from INTERPRO has been identified in other transcription factors such as PU.1, human erg, human elf-1, human elk-1, GA binding protein, and a number of others [, , ]. It is generally localized at the C terminus of the protein, with the exception of ELF-1, ELK-1, ELK-3, ELK-4 and ERF where it is found at the N terminus. This entry describes the highly conserved PNT (or Pointed) domain which is found within a subset of the ETs domain (IPR000418 from INTERPRO ), including mammalian Ets-1, Ets-2, Erg, Fli-1, GABPalpha, and Tel, as well as Drosophila Pnt-P2 and Yan. The PNT domain (IPR001660 from INTERPRO ) through a common tertiary arrangement of four alpha-helices. A role in protein-protein association has been established for the PNT domain [, ].; GO: 0043565 sequence-specific DNA binding, 0005634 nucleus; PDB: 1SXE_A 1SXD_A 2KMD_A 2JV3_A 2E8P_A 1SV4_B 1SV0_B 1LKY_F 1JI7_B 2DKX_A ....
Probab=35.00 E-value=16 Score=26.89 Aligned_cols=40 Identities=23% Similarity=0.489 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHH
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAIN 67 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN 67 (222)
.|-+.++.+||+-+.....++ ..++...=-||.-||.+-.
T Consensus 19 ~Wt~~~V~~Wl~w~~~~f~l~----~~~~~~f~~~G~~Lc~lt~ 58 (84)
T PF02198_consen 19 LWTKEDVLQWLRWVVREFDLP----AIDFSRFNMNGRELCSLTK 58 (84)
T ss_dssp G--HHHHHHHHHHHHHHTT-S----SCHGGGGTS-HHHHHHSHH
T ss_pred hCCHHHHHHHHHHHHHhcCCC----cCchhccCCCHHHHHHcCH
Confidence 578899999999887765553 2244444678999998744
No 43
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.73 E-value=64 Score=27.84 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHCCCCCccCCCCcccccccCChhHHHHHHHHHHH
Q 037959 102 NVRNFLVAVEELKLPAFEASDLERDTLEAGSAAKIVDCILSLKS 145 (222)
Q Consensus 102 NI~~FL~ac~~lGv~~Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r 145 (222)
+-..-...|.++|+|-||++-- .+.|+.+-|.||+-|-.
T Consensus 143 s~~qa~~La~kyglPYfETSA~-----tg~Nv~kave~LldlvM 181 (219)
T KOG0081|consen 143 SEDQAAALADKYGLPYFETSAC-----TGTNVEKAVELLLDLVM 181 (219)
T ss_pred hHHHHHHHHHHhCCCeeeeccc-----cCcCHHHHHHHHHHHHH
Confidence 4455667789999999999964 78999999999987653
No 44
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.75 E-value=58 Score=32.10 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=35.7
Q ss_pred hhhhhHHHHHHHHHHCCCC-CccCCCCcccccccCChhHHHHHHHHHHHhHH
Q 037959 98 QYFENVRNFLVAVEELKLP-AFEASDLERDTLEAGSAAKIVDCILSLKSYHE 148 (222)
Q Consensus 98 ~~~ENI~~FL~ac~~lGv~-~Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r~~~ 148 (222)
+++|.+..|+++||.+|+. .|+..+|+ +=..+.+.+|-+..+...
T Consensus 247 ~q~e~L~~f~~~ck~~g~~r~~~iP~l~------~i~~s~l~~lEe~l~~~~ 292 (491)
T KOG0251|consen 247 SQTEKLSEFLKVCKSVGVDRGFEIPVLK------RIPISLLEALEEHLRDVE 292 (491)
T ss_pred HHHHHHHHHHHHHHHhcccccccCcchh------hcCHHHHHHHHHHHhhcc
Confidence 6899999999999999998 68988883 344566777777776654
No 45
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=31.91 E-value=86 Score=28.09 Aligned_cols=45 Identities=22% Similarity=0.234 Sum_probs=32.8
Q ss_pred CcchhhhhHHHHHHHHHHCCCC-----CccCCCCcccccccCChhHHHHHHHHHHHh
Q 037959 95 PAYQYFENVRNFLVAVEELKLP-----AFEASDLERDTLEAGSAAKIVDCILSLKSY 146 (222)
Q Consensus 95 ~~F~~~ENI~~FL~ac~~lGv~-----~Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r~ 146 (222)
+.-.-.+++..++.||.++||+ .|.++-. +-.+.-|..|+.|...
T Consensus 39 GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~-------~R~~~EV~~Lm~L~~~ 88 (249)
T PRK14834 39 GHRAGVEALRRVVRAAGELGIGYLTLFAFSSENW-------SRPASEVSDLFGLLRL 88 (249)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEEecccc-------CCCHHHHHHHHHHHHH
Confidence 3446689999999999999999 3777766 2334556777776643
No 46
>PF00536 SAM_1: SAM domain (Sterile alpha motif); InterPro: IPR021129 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents type 1 SAM domains. ; PDB: 2KIV_A 3HIL_B 3KKA_A 3K1R_B 3SEN_B 3SEI_B 1V85_A 2KE7_A 2EAM_A 1WWV_A ....
Probab=30.74 E-value=18 Score=24.47 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHH
Q 037959 25 WRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNA 65 (222)
Q Consensus 25 ~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~L 65 (222)
|..+++.+||+.+ |. + .-.+.|....-||-.|+.+
T Consensus 3 W~~~~V~~WL~~~-~l---~--~y~~~F~~~~i~g~~L~~l 37 (64)
T PF00536_consen 3 WSVEDVSEWLKSL-GL---E--QYAENFEKNYIDGEDLLSL 37 (64)
T ss_dssp TSHHHHHHHHHHT-TG---G--GGHHHHHHTTSSHHHHTTS
T ss_pred CCHHHHHHHHHHC-CC---H--HHHHHHHcCCchHHHHHhc
Confidence 4567899999997 54 2 3457888888899888765
No 47
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=29.85 E-value=1.8e+02 Score=33.64 Aligned_cols=79 Identities=23% Similarity=0.312 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCccccccCCccccccCCCCCCCCcchhhhhHHH-
Q 037959 27 RFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENVRN- 105 (222)
Q Consensus 27 ~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~kI~~~ps~~~~~~~~~~~~~~F~~~ENI~~- 105 (222)
+.-+.-|-..-+. +.| +....||-.+-|||...=.||.+=.|+.|..-...|+ ....|+.+
T Consensus 169 KDALLLWCQmKTA--GYp-nVNI~nFTtSWRdGLaFNALIHkHRPDLvDf~~L~k~---------------na~~NL~~A 230 (2473)
T KOG0517|consen 169 KDALLLWCQMKTA--GYP-NVNITNFTTSWRDGLAFNALIHKHRPDLVDFDKLKKS---------------NALYNLQHA 230 (2473)
T ss_pred HHHHHHHHHhhcc--CCC-CcccccCccchhcchhHHHHHHhcCcchhhhcccCCC---------------chhhHHHHH
Confidence 4556778877765 345 3667899999999999999999999999864332222 26778855
Q ss_pred HHHHHHHCCCC-CccCCCC
Q 037959 106 FLVAVEELKLP-AFEASDL 123 (222)
Q Consensus 106 FL~ac~~lGv~-~Fe~~DL 123 (222)
|..|-+++|+. +.+++|.
T Consensus 231 FdvAE~~LGia~LLDpEDV 249 (2473)
T KOG0517|consen 231 FDVAEQELGIAKLLDPEDV 249 (2473)
T ss_pred HHHHHHHcCchhcCCHhhc
Confidence 56666889998 6788887
No 48
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=26.67 E-value=1.3e+02 Score=18.64 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhhCCCCCCCCC-CHhHHHHHchh
Q 037959 27 RFEAAEWLENLVGPLGVSSEP-SEREFISCLRN 58 (222)
Q Consensus 27 ~~e~~~WI~~llg~~~lp~~~-~~~~f~~~LrD 58 (222)
..++++||.+- |. ..|... +.+++.+.+++
T Consensus 6 ~~~L~~wL~~~-gi-~~~~~~~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 6 DSDLKSWLKSH-GI-PVPKSAKTRDELLKLAKK 36 (38)
T ss_pred HHHHHHHHHHc-CC-CCCCCCCCHHHHHHHHHH
Confidence 47899999996 65 344333 67778777664
No 49
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton]
Probab=26.52 E-value=2.6e+02 Score=26.05 Aligned_cols=103 Identities=11% Similarity=0.074 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCHhHHHHHchhhHHHHHHHHhhCCCCccccccCCccccccCCCCCCCCcchhhhhH
Q 037959 24 AWRRFEAAEWLENLVGPLGVSSEPSEREFISCLRNGLILCNAINKINPGTVTKVVENSSYIQSFSRESQPPPAYQYFENV 103 (222)
Q Consensus 24 ~~r~~e~~~WI~~llg~~~lp~~~~~~~f~~~LrDGvvLC~LiN~l~Pg~v~kI~~~ps~~~~~~~~~~~~~~F~~~ENI 103 (222)
..-++.+..+.+.-+..+++ ...++-....|||+|.-|+--+.-=.++--+ ++-++.+.-...-|+
T Consensus 256 n~VK~sli~FvNkhLnklnL----eVt~LdtQFaDGV~LvLL~GlLEgyFvpL~~----------F~Ltp~S~eekv~NV 321 (365)
T KOG3631|consen 256 NVVKKSLITFVNKHLNKLNL----EVTELDTQFADGVYLVLLMGLLEGYFVPLHH----------FYLTPNSFEEKVHNV 321 (365)
T ss_pred HHHHHHHHHHHHHHhhhccc----eeehhhhhhccchHHHHHHHhhccceeecce----------eecCCCCHHHHHHHH
Confidence 45567777788777776555 4568888899999999999887644443211 111223334668999
Q ss_pred HHHHHHHHHCCCC--CccCCCCcccccccCChhHHHHHHHHHHH
Q 037959 104 RNFLVAVEELKLP--AFEASDLERDTLEAGSAAKIVDCILSLKS 145 (222)
Q Consensus 104 ~~FL~ac~~lGv~--~Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r 145 (222)
+.-+...++=|+. .-.+.|+ + +++.+.-+.-|+-|-.
T Consensus 322 sfAfeLm~D~GL~kp~~rpeDI----v-N~D~KSTLRvLy~LFt 360 (365)
T KOG3631|consen 322 SFAFELMKDGGLEKPKVRPEDI----V-NKDLKSTLRVLYNLFT 360 (365)
T ss_pred HHHHHHHHccCcCCCCCChHHh----h-cccHHHHHHHHHHHHH
Confidence 9999999999986 4778887 4 4666665555555543
No 50
>KOG4226 consensus Adaptor protein NCK/Dock, contains SH2 and SH3 domains [Signal transduction mechanisms]
Probab=24.95 E-value=48 Score=30.71 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=25.9
Q ss_pred CCCcccccccccccCCCC---Ccccccccccceeeecc--eee
Q 037959 183 SGSSRHLDMSALSEKQLP---ANGENLKLEGRLVFSTG--VFH 220 (222)
Q Consensus 183 ~~~~r~ld~s~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~ 220 (222)
+...++++....-.-+.| .||..-..||||+.-|| |++
T Consensus 92 p~~d~~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~v 134 (379)
T KOG4226|consen 92 PSTDAEYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRVTV 134 (379)
T ss_pred CCccccCCcchhhhcCCceEEEEeeccccccccccccCcEEEE
Confidence 344455555444333344 78889999999999999 544
No 51
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.32 E-value=1.4e+02 Score=26.50 Aligned_cols=44 Identities=11% Similarity=0.118 Sum_probs=30.9
Q ss_pred CcchhhhhHHHHHHHHHHCCCC-----CccCCCCcccccccCChhHHHHHHHHHHH
Q 037959 95 PAYQYFENVRNFLVAVEELKLP-----AFEASDLERDTLEAGSAAKIVDCILSLKS 145 (222)
Q Consensus 95 ~~F~~~ENI~~FL~ac~~lGv~-----~Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r 145 (222)
+...-.+.+..++.||.++||+ .|.++-. ++. +.=|..|+.|..
T Consensus 39 GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~------kR~-~~Ev~~lm~L~~ 87 (243)
T PRK14829 39 GHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENW------KRS-PDEVRFLMGFSR 87 (243)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhh------CCC-HHHHHHHHHHHH
Confidence 4456789999999999999999 2666665 232 334566666654
No 52
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.99 E-value=1.4e+02 Score=27.15 Aligned_cols=44 Identities=16% Similarity=0.203 Sum_probs=31.7
Q ss_pred cchhhhhHHHHHHHHHHCCCC-----CccCCCCcccccccCChhHHHHHHHHHHHh
Q 037959 96 AYQYFENVRNFLVAVEELKLP-----AFEASDLERDTLEAGSAAKIVDCILSLKSY 146 (222)
Q Consensus 96 ~F~~~ENI~~FL~ac~~lGv~-----~Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r~ 146 (222)
...-.+.+..++.||.++||+ .|.++.. ++ .+.-|..|+.|...
T Consensus 67 H~~G~~~l~~i~~~c~~lGIk~lTvYaFS~EN~------~R-~~~EV~~Lm~L~~~ 115 (275)
T PRK14835 67 HEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNF------SR-SPAEVETLMNLFER 115 (275)
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEEEEcccc------CC-CHHHHHHHHHHHHH
Confidence 345689999999999999999 3777765 22 34456677666643
No 53
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=21.26 E-value=1.5e+02 Score=26.19 Aligned_cols=44 Identities=18% Similarity=0.212 Sum_probs=32.3
Q ss_pred CcchhhhhHHHHHHHHHHCCCC-----CccCCCCcccccccCChhHHHHHHHHHHH
Q 037959 95 PAYQYFENVRNFLVAVEELKLP-----AFEASDLERDTLEAGSAAKIVDCILSLKS 145 (222)
Q Consensus 95 ~~F~~~ENI~~FL~ac~~lGv~-----~Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r 145 (222)
+...-.+++..++.||.++||+ .|.++-. ++ .+.=|..|+.|..
T Consensus 24 GH~~G~~~~~~v~~~c~~~GI~~lT~yaFStEN~------~R-p~~EV~~Lm~L~~ 72 (226)
T TIGR00055 24 GHKAGVKSLRRILRWCANLGVECLTLYAFSTENW------KR-PKEEVDFLMELFE 72 (226)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhc------Cc-CHHHHHHHHHHHH
Confidence 4456789999999999999999 3888776 23 3444667776654
No 54
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.38 E-value=1.7e+02 Score=25.95 Aligned_cols=44 Identities=7% Similarity=0.150 Sum_probs=31.4
Q ss_pred CcchhhhhHHHHHHHHHHCCCC-----CccCCCCcccccccCChhHHHHHHHHHHH
Q 037959 95 PAYQYFENVRNFLVAVEELKLP-----AFEASDLERDTLEAGSAAKIVDCILSLKS 145 (222)
Q Consensus 95 ~~F~~~ENI~~FL~ac~~lGv~-----~Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r 145 (222)
+...-.+++..++.||.++||+ .|.++-. ++ .+.=|..|+.|..
T Consensus 31 GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~------~R-p~~EV~~Lm~L~~ 79 (230)
T PRK14837 31 GHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENW------NR-TDSEIEHLMFLIA 79 (230)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhc------CC-CHHHHHHHHHHHH
Confidence 3446789999999999999999 3888776 22 2344566666654
No 55
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.26 E-value=1.7e+02 Score=26.25 Aligned_cols=42 Identities=17% Similarity=0.253 Sum_probs=28.7
Q ss_pred chhhhhHHHHHHHHHHCCCCC-----ccCCCCcccccccCChhHHHHHHHHHHH
Q 037959 97 YQYFENVRNFLVAVEELKLPA-----FEASDLERDTLEAGSAAKIVDCILSLKS 145 (222)
Q Consensus 97 F~~~ENI~~FL~ac~~lGv~~-----Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r 145 (222)
-.-.+.+..++.||.++||+. |.++-. ++ .+.=|..|+.|..
T Consensus 49 ~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~------~R-~~~Ev~~Lm~l~~ 95 (251)
T PRK14830 49 KAGMDTVKKITKAASELGVKVLTLYAFSTENW------KR-PKDEVKFLMNLPV 95 (251)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEEehhhc------CC-CHHHHHHHHHHHH
Confidence 356889999999999999992 666554 22 2344556665543
No 56
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=20.07 E-value=1.8e+02 Score=26.01 Aligned_cols=44 Identities=20% Similarity=0.239 Sum_probs=31.5
Q ss_pred CcchhhhhHHHHHHHHHHCCCC-----CccCCCCcccccccCChhHHHHHHHHHHH
Q 037959 95 PAYQYFENVRNFLVAVEELKLP-----AFEASDLERDTLEAGSAAKIVDCILSLKS 145 (222)
Q Consensus 95 ~~F~~~ENI~~FL~ac~~lGv~-----~Fe~~DL~~~~~e~kn~~~Vv~cL~aL~r 145 (222)
+...-.+.+..++.||.++||+ .|.++-. ++. +.=|..|+.|..
T Consensus 34 GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~------~R~-~~EV~~Lm~L~~ 82 (239)
T PRK14839 34 GHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNW------RRP-AAEVGGLMRLLR 82 (239)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEEEechhhc------CCC-HHHHHHHHHHHH
Confidence 3446689999999999999999 3777776 233 344566766654
Done!