AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>037960
MASSSGTKKAGGPPPRTQSTKMSRAQTMFVDVQNEDGPAIDSELVPSSLAAIAPILRVAN
EIEKDNPRVAYLC
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with CALS1 CALS1 CALS1 AT1G05570	protein from Arabidopsis thaliana	2.1e-08
BLAST match view associations BLAST with CALS5 CALS5 CALS5 AT2G13680	protein from Arabidopsis thaliana	3.1e-07
BLAST match view associations BLAST with AT3G14780 AT3G14780 AT3G14780	protein from Arabidopsis thaliana	0.00020
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  037960
        (73 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2031938 - symbol:CALS1 "callose synthase 1" sp...   144  2.1e-08   1
TAIR|locus:2040456 - symbol:CALS5 "callose synthase 5" sp...   133  3.1e-07   1
TAIR|locus:2099367 - symbol:AT3G14780 "AT3G14780" species...    98  0.00020   1


>TAIR|locus:2031938 [details] [associations]
            symbol:CALS1 "callose synthase 1" species:3702
            "Arabidopsis thaliana" [GO:0000148 "1,3-beta-D-glucan synthase
            complex" evidence=IEA;ISS] [GO:0003843 "1,3-beta-D-glucan synthase
            activity" evidence=IEA;ISS] [GO:0005886 "plasma membrane"
            evidence=ISM;IDA] [GO:0006075 "(1->3)-beta-D-glucan biosynthetic
            process" evidence=IEA;ISS] [GO:0016020 "membrane" evidence=IEA]
            [GO:0016757 "transferase activity, transferring glycosyl groups"
            evidence=ISS] [GO:0009504 "cell plate" evidence=IDA] [GO:0009506
            "plasmodesma" evidence=IDA] [GO:0006944 "cellular membrane fusion"
            evidence=RCA] [GO:0009556 "microsporogenesis" evidence=RCA]
            [GO:0052543 "callose deposition in cell wall" evidence=RCA]
            InterPro:IPR003440 InterPro:IPR026953 Pfam:PF02364 GO:GO:0016021
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0009506
            GO:GO:0008360 GO:GO:0009504 CAZy:GT48 eggNOG:NOG307043
            GO:GO:0000148 GO:GO:0003843 InterPro:IPR026899 Pfam:PF14288
            EMBL:AC007153 EMBL:AF237733 EMBL:AC005106 EMBL:AK228963
            IPI:IPI00544652 PIR:E86189 RefSeq:NP_563743.2 UniGene:At.15333
            ProteinModelPortal:Q9AUE0 IntAct:Q9AUE0 STRING:Q9AUE0 PaxDb:Q9AUE0
            PRIDE:Q9AUE0 EnsemblPlants:AT1G05570.1 GeneID:837059
            KEGG:ath:AT1G05570 TAIR:At1g05570 HOGENOM:HOG000029513
            InParanoid:Q9AUE0 KO:K11000 OMA:RCPTILG PhylomeDB:Q9AUE0
            ProtClustDB:CLSN2918146 Genevestigator:Q9AUE0 GO:GO:0006075
            Gene3D:1.25.40.270 InterPro:IPR023175 PANTHER:PTHR12741:SF4
            Uniprot:Q9AUE0
        Length = 1950

 Score = 144 (55.7 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 35/62 (56%), Positives = 42/62 (67%)

Query:    13 PPPRTQSTKMSRAQTMFVDVQNEDGPA-IDSELVPSSLAAIAPILRVANEIEKDNPRVAY 71
             PPP+    ++ R QT+        G A +DSE+VPSSL  IAPILRVANE+E  NPRVAY
Sbjct:    10 PPPQR---RILRTQTV-----GSLGEAMLDSEVVPSSLVEIAPILRVANEVEASNPRVAY 61

Query:    72 LC 73
             LC
Sbjct:    62 LC 63


>TAIR|locus:2040456 [details] [associations]
            symbol:CALS5 "callose synthase 5" species:3702
            "Arabidopsis thaliana" [GO:0000148 "1,3-beta-D-glucan synthase
            complex" evidence=IEA;ISS] [GO:0003843 "1,3-beta-D-glucan synthase
            activity" evidence=IEA;ISS] [GO:0005886 "plasma membrane"
            evidence=ISM] [GO:0006075 "(1->3)-beta-D-glucan biosynthetic
            process" evidence=IEA;ISS;IMP] [GO:0016020 "membrane" evidence=IEA]
            [GO:0009556 "microsporogenesis" evidence=IMP] [GO:0010208 "pollen
            wall assembly" evidence=IMP] [GO:0009846 "pollen germination"
            evidence=IMP] [GO:0009860 "pollen tube growth" evidence=RCA;IMP]
            [GO:0080092 "regulation of pollen tube growth" evidence=IMP]
            [GO:0009827 "plant-type cell wall modification" evidence=RCA]
            [GO:0010584 "pollen exine formation" evidence=RCA]
            InterPro:IPR003440 InterPro:IPR026953 Pfam:PF02364 GO:GO:0016021
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0008360 EMBL:AC007063
            GO:GO:0009860 EMBL:AC006436 GO:GO:0009846 CAZy:GT48
            eggNOG:NOG307043 GO:GO:0000148 GO:GO:0003843 InterPro:IPR026899
            Pfam:PF14288 HOGENOM:HOG000029513 KO:K11000 GO:GO:0006075
            Gene3D:1.25.40.270 InterPro:IPR023175 PANTHER:PTHR12741:SF4
            EMBL:AY337762 EMBL:BK001470 IPI:IPI00516810 RefSeq:NP_849953.2
            UniGene:At.52728 ProteinModelPortal:Q3B724 PaxDb:Q3B724
            PRIDE:Q3B724 EnsemblPlants:AT2G13680.1 GeneID:815852
            KEGG:ath:AT2G13680 TAIR:At2g13680 InParanoid:Q3B724 OMA:RWIENSD
            PhylomeDB:Q3B724 ProtClustDB:CLSN2681240 ArrayExpress:Q3B724
            Genevestigator:Q3B724 GO:GO:0009556 GO:GO:0010208 GO:GO:0080092
            Uniprot:Q3B724
        Length = 1923

 Score = 133 (51.9 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 35/73 (47%), Positives = 42/73 (57%)

Query:     1 MASSSGTKKAGGPPPRTQSTKMSRAQTMFVDVQNEDGPAIDSELVPSSLAAIAPILRVAN 60
             MA SS T    GP    +    S A T+ ++V        D E+VP+SL  IAPILRVA 
Sbjct:     1 MAQSS-TSHDSGPQGLMRRPSRSAATTVSIEV-------FDHEVVPASLGTIAPILRVAA 52

Query:    61 EIEKDNPRVAYLC 73
             EIE + PRVAYLC
Sbjct:    53 EIEHERPRVAYLC 65


>TAIR|locus:2099367 [details] [associations]
            symbol:AT3G14780 "AT3G14780" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR
            eggNOG:NOG307043 Gene3D:1.25.40.270 InterPro:IPR023175
            InterPro:IPR004252 Pfam:PF03004 EMBL:BT005442 EMBL:AK119031
            IPI:IPI00531476 RefSeq:NP_188096.2 UniGene:At.39176
            ProteinModelPortal:Q8GW77 IntAct:Q8GW77 PaxDb:Q8GW77 PRIDE:Q8GW77
            EnsemblPlants:AT3G14780.1 GeneID:820706 KEGG:ath:AT3G14780
            TAIR:At3g14780 ArrayExpress:Q8GW77 Genevestigator:Q8GW77
            Uniprot:Q8GW77
        Length = 347

 Score = 98 (39.6 bits), Expect = 0.00020, P = 0.00020
 Identities = 21/34 (61%), Positives = 26/34 (76%)

Query:    41 DSELVPSSLAA-IAPILRVANEIEKDNPRVAYLC 73
             DSE +P +LA+ I   LRVAN +E D+PRVAYLC
Sbjct:    48 DSEKLPETLASGIQRFLRVANLVESDDPRVAYLC 81


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.125   0.347    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       73        73   0.00091  102 3  11 23  0.40    29
                                                     29  0.45    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  400 (43 KB)
  Total size of DFA:  68 KB (2061 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.47u 0.18s 9.65t   Elapsed:  00:00:00
  Total cpu time:  9.47u 0.18s 9.65t   Elapsed:  00:00:00
  Start:  Fri May 10 07:36:43 2013   End:  Fri May 10 07:36:43 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
