BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037960
(73 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LYS6|CALS6_ARATH Putative callose synthase 6 OS=Arabidopsis thaliana GN=CALS6 PE=3
SV=2
Length = 1921
Score = 97.4 bits (241), Expect = 2e-20, Method: Composition-based stats.
Identities = 51/73 (69%), Positives = 57/73 (78%), Gaps = 5/73 (6%)
Query: 2 ASSSGTKKAGGPPPRTQSTKM-SRAQTMFVDVQNEDGPAIDSELVPSSLAAIAPILRVAN 60
ASSSGT + PR+ S + SRA TM +D NED A+DSELVPSSLA+IAPILRVAN
Sbjct: 3 ASSSGTAEL----PRSLSRRAPSRATTMMIDRPNEDASAMDSELVPSSLASIAPILRVAN 58
Query: 61 EIEKDNPRVAYLC 73
EIEKDNPRVAYLC
Sbjct: 59 EIEKDNPRVAYLC 71
>sp|Q9SHJ3|CALS7_ARATH Callose synthase 7 OS=Arabidopsis thaliana GN=CALS7 PE=2 SV=3
Length = 1958
Score = 92.0 bits (227), Expect = 8e-19, Method: Composition-based stats.
Identities = 46/77 (59%), Positives = 57/77 (74%), Gaps = 5/77 (6%)
Query: 2 ASSSGTKKAGGPPP-----RTQSTKMSRAQTMFVDVQNEDGPAIDSELVPSSLAAIAPIL 56
++SSG + G PP R+ S KM+RA TM ++ NED IDSELVPSSLA+IAPIL
Sbjct: 3 STSSGGRGEDGRPPQMQPVRSMSRKMTRAGTMMIEHPNEDERPIDSELVPSSLASIAPIL 62
Query: 57 RVANEIEKDNPRVAYLC 73
RVAN+I++DN RVAYLC
Sbjct: 63 RVANDIDQDNARVAYLC 79
>sp|Q9LXT9|CALS3_ARATH Callose synthase 3 OS=Arabidopsis thaliana GN=CALS3 PE=2 SV=3
Length = 1955
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 36/66 (54%), Positives = 42/66 (63%), Gaps = 8/66 (12%)
Query: 11 GGP---PPRTQSTKMSRAQTMFVDVQNEDGPAIDSELVPSSLAAIAPILRVANEIEKDNP 67
GGP P + Q ++ R QT G + DSE+VPSSL IAPILRVANE+E NP
Sbjct: 6 GGPDQGPSQPQQRRIIRTQT-----AGNLGESFDSEVVPSSLVEIAPILRVANEVESSNP 60
Query: 68 RVAYLC 73
RVAYLC
Sbjct: 61 RVAYLC 66
>sp|Q9SL03|CALS2_ARATH Callose synthase 2 OS=Arabidopsis thaliana GN=CALS2 PE=2 SV=3
Length = 1950
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/62 (54%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 12 GPPPRTQSTKMSRAQTMFVDVQNEDGPAIDSELVPSSLAAIAPILRVANEIEKDNPRVAY 71
GP P ++ R QT N +DSE+VPSSL IAPILRVANE+E NPRVAY
Sbjct: 6 GPDPPPPQRRILRTQT----AGNLGEAMLDSEVVPSSLVEIAPILRVANEVEASNPRVAY 61
Query: 72 LC 73
LC
Sbjct: 62 LC 63
>sp|Q9AUE0|CALS1_ARATH Callose synthase 1 OS=Arabidopsis thaliana GN=CALS1 PE=1 SV=2
Length = 1950
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/61 (55%), Positives = 41/61 (67%), Gaps = 7/61 (11%)
Query: 13 PPPRTQSTKMSRAQTMFVDVQNEDGPAIDSELVPSSLAAIAPILRVANEIEKDNPRVAYL 72
PPP+ ++ R QT V + +DSE+VPSSL IAPILRVANE+E NPRVAYL
Sbjct: 10 PPPQR---RILRTQT----VGSLGEAMLDSEVVPSSLVEIAPILRVANEVEASNPRVAYL 62
Query: 73 C 73
C
Sbjct: 63 C 63
>sp|Q3B724|CALS5_ARATH Callose synthase 5 OS=Arabidopsis thaliana GN=CALS5 PE=1 SV=1
Length = 1923
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 42/73 (57%), Gaps = 8/73 (10%)
Query: 1 MASSSGTKKAGGPPPRTQSTKMSRAQTMFVDVQNEDGPAIDSELVPSSLAAIAPILRVAN 60
MA SS T GP + S A T+ ++V D E+VP+SL IAPILRVA
Sbjct: 1 MAQSS-TSHDSGPQGLMRRPSRSAATTVSIEV-------FDHEVVPASLGTIAPILRVAA 52
Query: 61 EIEKDNPRVAYLC 73
EIE + PRVAYLC
Sbjct: 53 EIEHERPRVAYLC 65
>sp|Q9LUD7|CALS8_ARATH Putative callose synthase 8 OS=Arabidopsis thaliana GN=CALS8 PE=2
SV=2
Length = 1976
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 10/76 (13%)
Query: 3 SSSGTKKAGGP----PPRTQSTKMSRAQTMFVDVQNEDGPAIDSELVPSSLAA-IAPILR 57
S+S ++ GP P R +T+ +R+ T V +E DSE +P++LA+ I LR
Sbjct: 15 STSYSRPILGPREDSPER--ATEFTRSLTFREHVSSE---PFDSERLPATLASEIQRFLR 69
Query: 58 VANEIEKDNPRVAYLC 73
+AN +E + PR+AYLC
Sbjct: 70 IANLVESEEPRIAYLC 85
>sp|Q9LTG5|CALS4_ARATH Callose synthase 4 OS=Arabidopsis thaliana GN=CALS4 PE=2 SV=2
Length = 1871
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/33 (63%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 41 DSELVPSSLAA-IAPILRVANEIEKDNPRVAYL 72
DSELVPSSL I PILRVA ++E NPR +L
Sbjct: 24 DSELVPSSLHEDITPILRVAKDVEDTNPRSLFL 56
>sp|O13703|VTA1_SCHPO Vacuolar protein sorting-associated protein vts1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vts1 PE=3 SV=2
Length = 389
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 40 IDSELVPSSLAAIAPILRVANEIEKDNPRVAYLC 73
I + +P L +I P +R NE+E NP +AY
Sbjct: 2 IQIDTIPKELQSIQPFVRRFNELEAHNPVIAYWS 35
>sp|B9MIT4|HSCA_ACIET Chaperone protein HscA homolog OS=Acidovorax ebreus (strain TPSY)
GN=hscA PE=3 SV=1
Length = 622
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 27 TMFVDVQNEDGPAIDSELVPSSLAAIAPILRVANEIEKDNPRVAYLC 73
T+ DV+ ED A+ +EL SLAA+ LR A +IE+D + L
Sbjct: 295 TVQFDVKREDFAAVTAELTQRSLAAVRRTLRDA-QIERDEVKGVVLV 340
>sp|Q86195|VP2_ROTGA Inner capsid protein VP2 OS=Rotavirus B (isolate
Human/China/ADRV/1982) PE=3 SV=1
Length = 933
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Query: 25 AQTMFVDVQNEDGPAIDSELVPSSLAAIAPILRVANEIEKDNPR 68
++T+FVDV+NED S +P+ A + P+L A I+ P+
Sbjct: 93 SKTLFVDVENEDY----SVYIPNDTAKLTPVLIDARPIQTYQPK 132
>sp|A1W7T4|HSCA_ACISJ Chaperone protein HscA homolog OS=Acidovorax sp. (strain JS42)
GN=hscA PE=3 SV=1
Length = 622
Score = 29.3 bits (64), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 27 TMFVDVQNEDGPAIDSELVPSSLAAIAPILRVANEIEKDNPRVAYLC 73
T+ DV+ ED A+ ++L SLAA+ LR A +IE+D + L
Sbjct: 295 TVQFDVKREDFAAVTADLTQRSLAAVRRTLRDA-QIERDEVKGVVLV 340
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.125 0.347
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,915,640
Number of Sequences: 539616
Number of extensions: 853798
Number of successful extensions: 1888
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1878
Number of HSP's gapped (non-prelim): 17
length of query: 73
length of database: 191,569,459
effective HSP length: 45
effective length of query: 28
effective length of database: 167,286,739
effective search space: 4684028692
effective search space used: 4684028692
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)