Query 037960
Match_columns 73
No_of_seqs 61 out of 63
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 06:09:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0916 1,3-beta-glucan syntha 98.4 1.5E-07 3.2E-12 84.4 2.0 46 27-73 14-60 (1679)
2 KOG0917 Uncharacterized conser 83.5 0.32 7E-06 38.7 -0.2 23 51-73 10-32 (338)
3 PRK07742 phosphate butyryltran 20.6 38 0.00082 25.4 0.3 17 57-73 161-177 (299)
4 TIGR03413 GSH_gloB hydroxyacyl 19.9 30 0.00064 24.8 -0.4 21 41-61 198-221 (248)
5 PF00525 Crystallin: Alpha cry 18.8 42 0.00091 20.9 0.2 23 33-55 26-48 (59)
6 PF06469 DUF1088: Domain of Un 18.6 40 0.00087 24.7 0.0 10 54-63 12-21 (169)
7 PRK10241 hydroxyacylglutathion 18.5 39 0.00084 24.3 -0.0 20 41-60 199-221 (251)
8 PRK05805 phosphate butyryltran 18.5 46 0.001 25.2 0.4 18 56-73 161-178 (301)
9 TIGR02709 branched_ptb branche 17.9 47 0.001 25.4 0.3 18 56-73 137-154 (271)
10 TIGR02706 P_butyryltrans phosp 16.0 56 0.0012 24.5 0.3 28 46-73 146-174 (294)
No 1
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=98.37 E-value=1.5e-07 Score=84.38 Aligned_cols=46 Identities=59% Similarity=0.765 Sum_probs=37.7
Q ss_pred eeeecccCCCCCCCCCccCCcccc-chhhHhhhccccccCCCcccccC
Q 037960 27 TMFVDVQNEDGPAIDSELVPSSLA-AIAPILRVANEIEKDNPRVAYLC 73 (73)
Q Consensus 27 t~~v~~~~~~~~~~dSE~vPssl~-~I~piLRvAneiE~~~PRVAyLC 73 (73)
+.+++.++.+ +.+|++.+|+|+. +|+||||+||+||++|||+||||
T Consensus 14 ~~~~~~~~~~-~~~~~~~~~~s~~~~i~pilr~a~~i~~~~p~~a~l~ 60 (1679)
T KOG0916|consen 14 DQTIYDGYEY-ESYDSSGLPSSLYDDIAPILRVANEIEQQNPRVAYLC 60 (1679)
T ss_pred hhhhccCCCC-CCCCcccCCcccccccchhhhccccccccCchhhhcc
Confidence 3333345555 5888888888888 59999999999999999999999
No 2
>KOG0917 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.53 E-value=0.32 Score=38.72 Aligned_cols=23 Identities=48% Similarity=0.772 Sum_probs=22.3
Q ss_pred chhhHhhhccccccCCCcccccC
Q 037960 51 AIAPILRVANEIEKDNPRVAYLC 73 (73)
Q Consensus 51 ~I~piLRvAneiE~~~PRVAyLC 73 (73)
.|.++||.|.|.++.+|-|||.|
T Consensus 10 si~~~l~~a~e~~k~dpvvayyc 32 (338)
T KOG0917|consen 10 SIQHHLRTAQEHDKRDPVVAYYC 32 (338)
T ss_pred HHHHHHHHHHhhcccccHHHHHH
Confidence 79999999999999999999988
No 3
>PRK07742 phosphate butyryltransferase; Validated
Probab=20.59 E-value=38 Score=25.45 Aligned_cols=17 Identities=47% Similarity=0.526 Sum_probs=13.1
Q ss_pred hhccccccCCCcccccC
Q 037960 57 RVANEIEKDNPRVAYLC 73 (73)
Q Consensus 57 RvAneiE~~~PRVAyLC 73 (73)
.+|+.+.-++||||.||
T Consensus 161 ~~a~~lGie~PkVAlLs 177 (299)
T PRK07742 161 EVARAIGIDLPKVAPLA 177 (299)
T ss_pred HHHHHhCCCCCeEEEEe
Confidence 55666766789999986
No 4
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=19.86 E-value=30 Score=24.85 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=16.5
Q ss_pred CCccCCcccc-c--hhhHhhhccc
Q 037960 41 DSELVPSSLA-A--IAPILRVANE 61 (73)
Q Consensus 41 dSE~vPssl~-~--I~piLRvAne 61 (73)
+-..||++|+ | +-||||+-+.
T Consensus 198 ~~~t~pstl~~E~~~Npflr~~~~ 221 (248)
T TIGR03413 198 GQPTLPSTLGLERATNPFLRADDP 221 (248)
T ss_pred CCCCCCccHHHHHhhCCeecCCCH
Confidence 3467999999 3 9999998543
No 5
>PF00525 Crystallin: Alpha crystallin A chain, N terminal; InterPro: IPR003090 The crystallins are water-soluble structural proteins that occur in high concentration in the cytoplasm of eye lens fibre cells. Four major groups of crystallin have been distinguished on the basis of size, charge and immunological properties: alpha-, beta- and gamma-crystallins occur in all vertebrate classes (though gamma-crystallins are low or absent in avian lenses); and delta-crystallin is found exclusively in reptiles and birds [, ]. Alpha-crystallin occurs as large aggregates, comprising two types of related subunits (A and B) that are highly similar to the small (15-30kDa) heat shock proteins (HSPs), particularly in their C-terminal halves. The relationship between these families is one of classic gene duplication and divergence, from the small HSP family, allowing adaptation to novel functions. Divergence probably occurred prior to evolution of the eye lens, alpha-crystallin being found in small amounts in tissues outside the lens []. Alpha-crystallin has chaperone-like properties including the ability to prevent the precipitation of denatured proteins and to increase cellular tolerance to stress []. It has been suggested that these functions are important for the maintenance of lens transparency and the prevention of cataracts. This is supported by the observation that alpha-crystallin mutations show an association with cataract formation. This entry represents the N-terminal domain of alpha-crystallin. It is not necessary for dimerisation or chaperone activity, but appears to be required for the formation of higher order aggregates [, ].; GO: 0005212 structural constituent of eye lens; PDB: 2YGD_P.
Probab=18.76 E-value=42 Score=20.87 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=13.1
Q ss_pred cCCCCCCCCCccCCccccchhhH
Q 037960 33 QNEDGPAIDSELVPSSLAAIAPI 55 (73)
Q Consensus 33 ~~~~~~~~dSE~vPssl~~I~pi 55 (73)
+++++-.+|+|++|.+...+.|+
T Consensus 26 Q~FGEgL~d~DLf~~~~s~lsp~ 48 (59)
T PF00525_consen 26 QNFGEGLFDSDLFPSSSSTLSPY 48 (59)
T ss_dssp TTSEESSTTTT---BT-TCSS--
T ss_pred HhhccccCHhhhccccccccCcc
Confidence 57888899999999984444444
No 6
>PF06469 DUF1088: Domain of Unknown Function (DUF1088); InterPro: IPR010508 This domain is found in the neurobeachins. The function of this region is not known.
Probab=18.58 E-value=40 Score=24.73 Aligned_cols=10 Identities=70% Similarity=0.846 Sum_probs=8.0
Q ss_pred hHhhhccccc
Q 037960 54 PILRVANEIE 63 (73)
Q Consensus 54 piLRvAneiE 63 (73)
=|+|||||-|
T Consensus 12 HivRVAnEAe 21 (169)
T PF06469_consen 12 HIVRVANEAE 21 (169)
T ss_pred HHHHHhHHHH
Confidence 4899999865
No 7
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=18.54 E-value=39 Score=24.34 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=15.9
Q ss_pred CCccCCcccc-c--hhhHhhhcc
Q 037960 41 DSELVPSSLA-A--IAPILRVAN 60 (73)
Q Consensus 41 dSE~vPssl~-~--I~piLRvAn 60 (73)
+-.-||++|+ | |-||||+-+
T Consensus 199 ~~~t~pstl~~E~~~Npflr~~~ 221 (251)
T PRK10241 199 NQITLPVILKNERQINLFLRTED 221 (251)
T ss_pred CCCcCCccHHHHHhhCCeecCCC
Confidence 3467999999 3 999999754
No 8
>PRK05805 phosphate butyryltransferase; Validated
Probab=18.52 E-value=46 Score=25.15 Aligned_cols=18 Identities=44% Similarity=0.805 Sum_probs=14.4
Q ss_pred hhhccccccCCCcccccC
Q 037960 56 LRVANEIEKDNPRVAYLC 73 (73)
Q Consensus 56 LRvAneiE~~~PRVAyLC 73 (73)
.++|+.+.-++||||.||
T Consensus 161 ~~~~~~lG~e~PkVA~LS 178 (301)
T PRK05805 161 VTVAHAIGIENPKVAPIC 178 (301)
T ss_pred HHHHHHcCCCCCeEEEEe
Confidence 366777777889999986
No 9
>TIGR02709 branched_ptb branched-chain phosphotransacylase. This model distinguishes branched-chain phosphotransacylases like that of Enterococcus faecalis from closely related subfamilies of phosphate butyryltransferase (EC 2.3.1.19) (TIGR02706) and phosphate acetyltransferase (EC 2.3.1.8) (TIGR00651). Members of this family and of TIGR02706 show considerable crossreactivity, and the occurrence of a member of either family near an apparent leucine dehydrogenase will suggest activity on branched chain-acyl-CoA compounds.
Probab=17.93 E-value=47 Score=25.44 Aligned_cols=18 Identities=28% Similarity=0.508 Sum_probs=14.3
Q ss_pred hhhccccccCCCcccccC
Q 037960 56 LRVANEIEKDNPRVAYLC 73 (73)
Q Consensus 56 LRvAneiE~~~PRVAyLC 73 (73)
.++|+.+.-++||||.||
T Consensus 137 ~~~ar~lGie~PkVAlLS 154 (271)
T TIGR02709 137 KEVAQKLGLHHPKIALLS 154 (271)
T ss_pred HHHHHHcCCCCCeEEEEe
Confidence 366677777899999986
No 10
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=16.01 E-value=56 Score=24.48 Aligned_cols=28 Identities=32% Similarity=0.361 Sum_probs=17.3
Q ss_pred Cccccchh-hHhhhccccccCCCcccccC
Q 037960 46 PSSLAAIA-PILRVANEIEKDNPRVAYLC 73 (73)
Q Consensus 46 Pssl~~I~-piLRvAneiE~~~PRVAyLC 73 (73)
|.-|++|. -=...|+.+.-++||||.|+
T Consensus 146 ~e~l~~ia~~a~~~ar~lGie~PrVAlLs 174 (294)
T TIGR02706 146 LKDKVQIINNAVKVAHAIGIDVPKVAPLA 174 (294)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 33444442 22356677766789999985
Done!