Query 037960
Match_columns 73
No_of_seqs 61 out of 63
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 10:07:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lxl_A Vacuolar protein sortin 98.4 1.6E-08 5.3E-13 71.3 -1.4 33 41-73 6-38 (183)
2 2rkk_A Vacuolar protein sortin 91.7 0.014 4.6E-07 41.0 -1.9 23 51-73 5-28 (168)
3 2bbw_A Adenylate kinase 4, AK4 18.8 38 0.0013 22.2 1.0 13 60-72 234-246 (246)
4 3uf6_A LMO1369 protein; struct 10.4 66 0.0023 23.2 0.3 15 59-73 159-173 (291)
5 1yco_A Branched-chain phosphot 9.8 76 0.0026 22.7 0.5 28 46-73 127-155 (279)
6 4sgb_I Potato inhibitor, PCI-1 9.4 80 0.0027 18.4 0.4 7 65-71 40-46 (51)
7 1hym_B CMTI-V, hydrolyzed cucu 9.2 81 0.0028 15.7 0.3 8 65-72 19-26 (26)
8 1otr_A Protein CUE2; protein-p 7.5 1.2E+02 0.004 16.9 0.5 18 43-60 13-31 (49)
9 2v7k_A PRNB; IDO, TDO, biosynt 7.2 93 0.0032 23.4 -0.0 26 42-71 89-114 (361)
10 1ecm_A Endo-oxabicyclic transi 6.4 1.1E+02 0.0038 18.5 0.0 11 62-72 99-109 (109)
No 1
>2lxl_A Vacuolar protein sorting-associated protein VTA1; MIT, protein transport; NMR {Homo sapiens} PDB: 2lxm_A
Probab=98.42 E-value=1.6e-08 Score=71.27 Aligned_cols=33 Identities=36% Similarity=0.607 Sum_probs=30.7
Q ss_pred CCccCCccccchhhHhhhccccccCCCcccccC
Q 037960 41 DSELVPSSLAAIAPILRVANEIEKDNPRVAYLC 73 (73)
Q Consensus 41 dSE~vPssl~~I~piLRvAneiE~~~PRVAyLC 73 (73)
+=..||++|..|.||||.|+|+|..+|+|||+|
T Consensus 6 ~l~~vP~~LK~I~p~L~~A~Ele~~~PvVaY~C 38 (183)
T 2lxl_A 6 PLPPLPAQFKSIQHHLRTAQEHDKRDPVVAYYC 38 (183)
T ss_dssp CCCCCCGGGSSSHHHHHHHHHHHHHCHHHHHHH
T ss_pred CCCCCChhHHhHHHHHHHHHHHhhcccHHHHHH
Confidence 345799999999999999999999999999999
No 2
>2rkk_A Vacuolar protein sorting-associated protein VTA1; MIT motif, cytoplasm, endosome, lipid transport, membrane, protein transport; 2.90A {Saccharomyces cerevisiae}
Probab=91.69 E-value=0.014 Score=41.03 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=21.8
Q ss_pred chhhHhhhccccccC-CCcccccC
Q 037960 51 AIAPILRVANEIEKD-NPRVAYLC 73 (73)
Q Consensus 51 ~I~piLRvAneiE~~-~PRVAyLC 73 (73)
.|.|+|+-|+|+|.. +|-|||-|
T Consensus 5 ~i~p~l~rA~Ele~~~~PvVaYyC 28 (168)
T 2rkk_A 5 NAARVVATAKDFDKVGLGIIGYYL 28 (168)
T ss_dssp HHHHHHHHHHHHHHTTBHHHHHHH
T ss_pred hHHHHHHHHHHHHhccCcchhHHH
Confidence 589999999999999 99999988
No 3
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=18.81 E-value=38 Score=22.16 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=9.7
Q ss_pred cccccCCCccccc
Q 037960 60 NEIEKDNPRVAYL 72 (73)
Q Consensus 60 neiE~~~PRVAyL 72 (73)
+.+...+||.|||
T Consensus 234 ~~~~~~~~~~~~~ 246 (246)
T 2bbw_A 234 NKITPIQSKEAYL 246 (246)
T ss_dssp TTSCCCCCGGGC-
T ss_pred hhCCCCCcccccC
Confidence 4567889999986
No 4
>3uf6_A LMO1369 protein; structural genomics, the center for structural genomics of I diseases, csgid, unknown function, transferase; HET: COD; 1.80A {Listeria monocytogenes} PDB: 3tng_A* 3u9e_A*
Probab=10.36 E-value=66 Score=23.23 Aligned_cols=15 Identities=40% Similarity=0.669 Sum_probs=10.9
Q ss_pred ccccccCCCcccccC
Q 037960 59 ANEIEKDNPRVAYLC 73 (73)
Q Consensus 59 AneiE~~~PRVAyLC 73 (73)
|..+.-++||||.|+
T Consensus 159 ar~~Gie~PkVAlLS 173 (291)
T 3uf6_A 159 AHQIGITNPKIALLS 173 (291)
T ss_dssp HHHHTCCSCCEEEEC
T ss_pred HHHhCCCCCeEEEEe
Confidence 344566789999985
No 5
>1yco_A Branched-chain phosphotransacylase; structural genomics, protein structure initiative, PSI, nysgxrc; 2.40A {Enterococcus faecalis}
Probab=9.77 E-value=76 Score=22.71 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=16.9
Q ss_pred Cccccchhh-HhhhccccccCCCcccccC
Q 037960 46 PSSLAAIAP-ILRVANEIEKDNPRVAYLC 73 (73)
Q Consensus 46 Pssl~~I~p-iLRvAneiE~~~PRVAyLC 73 (73)
|.-|++|+- =-..|....-++||||.|+
T Consensus 127 ~e~l~~ia~~a~~~a~~lGi~~PkVAlLs 155 (279)
T 1yco_A 127 QATLIEIVENAKEVAQKLGLHHPKIALLS 155 (279)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 445555332 1344445666799999985
No 6
>4sgb_I Potato inhibitor, PCI-1; complex(serine proteinase-inhibitor); 2.10A {Streptomyces griseus} SCOP: g.69.1.1 PDB: 2jzm_A 1tih_A 1qh2_B
Probab=9.40 E-value=80 Score=18.40 Aligned_cols=7 Identities=43% Similarity=0.975 Sum_probs=4.8
Q ss_pred CCCcccc
Q 037960 65 DNPRVAY 71 (73)
Q Consensus 65 ~~PRVAy 71 (73)
-+|||||
T Consensus 40 CD~rIay 46 (51)
T 4sgb_I 40 CDPHIAY 46 (51)
T ss_dssp BCTTCCE
T ss_pred CCCceee
Confidence 4677777
No 7
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=9.17 E-value=81 Score=15.74 Aligned_cols=8 Identities=25% Similarity=0.634 Sum_probs=3.7
Q ss_pred CCCccccc
Q 037960 65 DNPRVAYL 72 (73)
Q Consensus 65 ~~PRVAyL 72 (73)
.-|+|+||
T Consensus 19 ~~P~iG~~ 26 (26)
T 1hym_B 19 SPPRIGXX 26 (26)
T ss_dssp CCSBCC--
T ss_pred ECCcccCC
Confidence 45666665
No 8
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=7.53 E-value=1.2e+02 Score=16.90 Aligned_cols=18 Identities=17% Similarity=0.217 Sum_probs=14.1
Q ss_pred ccCCcccc-chhhHhhhcc
Q 037960 43 ELVPSSLA-AIAPILRVAN 60 (73)
Q Consensus 43 E~vPssl~-~I~piLRvAn 60 (73)
|+||+.-. .|.-.|+.||
T Consensus 13 EMFP~~~~~~ik~~L~~~~ 31 (49)
T 1otr_A 13 DMFPAISKSKLQVHLLENN 31 (49)
T ss_dssp HHCSSSCHHHHHHHHHHTT
T ss_pred HHCCCCCHHHHHHHHHHcC
Confidence 67887766 5888898885
No 9
>2v7k_A PRNB; IDO, TDO, biosynthetic protein; HET: HEM DTR; 1.70A {Pseudomonas fluorescens} PDB: 2v7j_A* 2v7i_A* 2v7l_A* 2v7m_A* 2x66_A* 2x67_A* 2x68_A*
Probab=7.20 E-value=93 Score=23.43 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=20.4
Q ss_pred CccCCccccchhhHhhhccccccCCCcccc
Q 037960 42 SELVPSSLAAIAPILRVANEIEKDNPRVAY 71 (73)
Q Consensus 42 SE~vPssl~~I~piLRvAneiE~~~PRVAy 71 (73)
++++|..++ |+++|+..++-- |+..|
T Consensus 89 ~~~lP~~ia---Pl~~vs~~Lglp-P~lty 114 (361)
T 2v7k_A 89 AEVVPGLEP---VLLDLARATNLP-PRETL 114 (361)
T ss_dssp HHHSTTHHH---HHHHHHHHHTSC-SSCCH
T ss_pred ccCCCcccc---HHHHHHHHcCcC-Ccccc
Confidence 368888777 999999988875 76555
No 10
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=6.39 E-value=1.1e+02 Score=18.49 Aligned_cols=11 Identities=36% Similarity=0.763 Sum_probs=0.0
Q ss_pred cccCCCccccc
Q 037960 62 IEKDNPRVAYL 72 (73)
Q Consensus 62 iE~~~PRVAyL 72 (73)
.+..+.||||+
T Consensus 99 ~~~~~~~v~~~ 109 (109)
T 1ecm_A 99 INPHSARIAFL 109 (109)
T ss_dssp -----------
T ss_pred cCCCCCeeeeC
Confidence 33355688885
Done!