BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037961
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HG2|A Chain A, The Structure Of A Putative Type Ii Methyltransferase From
Anaeromyxobacter Dehalogenans.
pdb|4HG2|B Chain B, The Structure Of A Putative Type Ii Methyltransferase From
Anaeromyxobacter Dehalogenans
Length = 257
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 120/257 (46%), Gaps = 17/257 (6%)
Query: 5 FIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTS 64
F A+ Y RP YP+ LF+ + P R A D G SGQA+ LA+ ++ V A D
Sbjct: 11 FTPVADAYRAFRPRYPRALFRWLGEVAPARGDALDCGCGSGQASLGLAEFFERVHAVDPG 70
Query: 65 PKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWV 124
Q++ A++ P + Y + P E +SVD+ A A HWFDL +F+ +++ V
Sbjct: 71 EAQIRQALRHPRVTYAVAPA------EDTGLPPASVDVAIAAQAXHWFDLDRFWAELRRV 124
Query: 125 LKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVD 184
+P V AA TY + ++ V AV W P+R V+ Y ++ FPF ++
Sbjct: 125 -ARPGAVFAAVTYGLTRVDPEVDAVVDRLYHGLLARDWPPERVHVESGYRTLPFPFPELE 183
Query: 185 GYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDK-GVELLTENVMEKFKAAWNEDG 243
+E+ D + ++ + SA + + G + L E + +AAW
Sbjct: 184 A-------PPLEIEERWPXDAFLGYLGTWSAVTAHRRRTGADPLAE-IAPALRAAWGTPE 235
Query: 244 QSQKIARFRVYLRIGKV 260
+ ++ + + +R G++
Sbjct: 236 RPLRVT-WPIAIRAGRI 251
>pdb|4HTF|A Chain A, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 9/168 (5%)
Query: 21 KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQ 80
++L +++A P++ D G GQ A A+ VI D S + + A + +
Sbjct: 56 QDLDRVLAEXGPQKLRVLDAGGGEGQTAIKXAERGHQVILCDLSAQXIDRAKQAAEAKGV 115
Query: 81 LTPTMSITELEQNVAT--QSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138
I Q+VA+ ++ VDL+ + L W P+ Q W + +P GV++ Y
Sbjct: 116 SDNXQFIHCAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLXFYN 175
Query: 139 MPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGY 186
+ V FD + P++K K+ +S D+P +P Y
Sbjct: 176 AHGLLXH-NXVAGNFDYVQAG---XPKKK---KRTLSPDYPRDPTQVY 216
>pdb|4HTF|B Chain B, Crystal Structure Of S-Adenosylmethionine-Dependent
Methyltransferase From Escherichia Coli In Complex With
S-Adenosylmethionine
Length = 285
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 72/168 (42%), Gaps = 9/168 (5%)
Query: 21 KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQ 80
++L +++A P++ D G GQ A A+ VI D S + + A + +
Sbjct: 56 QDLDRVLAEXGPQKLRVLDAGGGEGQTAIKXAERGHQVILCDLSAQXIDRAKQAAEAKGV 115
Query: 81 LTPTMSITELEQNVAT--QSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138
I Q+VA+ ++ VDL+ + L W P+ Q W + +P GV++ Y
Sbjct: 116 SDNXQFIHCAAQDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLXFYN 175
Query: 139 MPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGY 186
+ V FD + P++K K+ +S D+P +P Y
Sbjct: 176 AHGLLXH-NXVAGNFDYVQAG---XPKKK---KRTLSPDYPRDPTQVY 216
>pdb|3G5T|A Chain A, Crystal Structure Of Trans-Aconitate 3-Methyltransferase
From Yeast
Length = 299
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 12/119 (10%)
Query: 33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFA--IK------LPNIRYQL 81
+R L DVG G A AQ ++ +I +D S +K A IK N+ +++
Sbjct: 36 ERKLLVDVGCGPGTATLQXAQELKPFEQIIGSDLSATXIKTAEVIKEGSPDTYKNVSFKI 95
Query: 82 TPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMP 140
+ + L + + +D +T HWFD +F + L+K G IA W Y P
Sbjct: 96 SSSDDFKFLGADSVDKQKIDXITAVECAHWFDFEKFQRSAYANLRK-DGTIAIWGYADP 153
>pdb|3TDC|A Chain A, Crystal Structure Of Human Acetyl-Coa Carboxylase 2
Length = 762
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 132 IAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGP 191
I W MP+ N S + P D ID + P R D ++M P + G +G
Sbjct: 317 ILEWLSYMPKDNHSPVPIITPTDPIDREIEFLPSRAPYDPRWMLAGRPHPTLKGTWQSGF 376
Query: 192 FDQFVVEKMM 201
FD +++M
Sbjct: 377 FDHGSFKEIM 386
>pdb|3FF6|A Chain A, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|B Chain B, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|C Chain C, Human Acc2 Ct Domain With Cp-640186
pdb|3FF6|D Chain D, Human Acc2 Ct Domain With Cp-640186
Length = 760
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%)
Query: 132 IAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGP 191
I W MP+ N S + P D ID + P R D ++M P + G +G
Sbjct: 315 ILEWLSYMPKDNHSPVPIITPTDPIDREIEFLPSRAPYDPRWMLAGRPHPTLKGTWQSGF 374
Query: 192 FDQFVVEKMM 201
FD +++M
Sbjct: 375 FDHGSFKEIM 384
>pdb|2X24|A Chain A, Bovine Acc2 Ct Domain In Complex With Inhibitor
pdb|2X24|B Chain B, Bovine Acc2 Ct Domain In Complex With Inhibitor
Length = 793
Score = 32.3 bits (72), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 31/70 (44%)
Query: 132 IAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGP 191
I W MP+ N S V P D ID + P R D +++ P + G +G
Sbjct: 341 ILEWLSYMPKDNRSPVPVVTPKDPIDREIEFQPSRGPYDPRWLLAGRPHPTLKGSWQSGF 400
Query: 192 FDQFVVEKMM 201
FDQ +++M
Sbjct: 401 FDQGSFKEIM 410
>pdb|4D8V|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis At Ph 4.2
pdb|4D8V|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis At Ph 4.2
pdb|4D8X|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P6322 At Ph 4.6
pdb|4D8Y|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|C Chain C, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|D Chain D, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|E Chain E, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|F Chain F, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D98|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group H32
At Ph 7.5
pdb|4D98|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group H32
At Ph 7.5
pdb|4D9H|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenosine
pdb|4D9H|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenosine
pdb|4DA0|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
2'-Deoxyguanosine
pdb|4DA6|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Ganciclovir
pdb|4DA7|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Aciclovir
pdb|4DA8|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
8-Bromoguanosine
pdb|4DAB|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Hypoxanthine
pdb|4DAE|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
6-Chloroguanosine
pdb|4DAN|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
2-Fluoroadenosine
pdb|4DAN|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
2-Fluoroadenosine
pdb|4DAO|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenine
pdb|4DAO|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenine
pdb|4DAR|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Tubercidin
Length = 253
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 5/42 (11%)
Query: 214 SAYQKAKDKGVELLTENVM--EKFKAAWNEDGQSQKIARFRV 253
+AY AKDKGV + +V ++F +N+D Q +K+A++ V
Sbjct: 156 NAYDAAKDKGVPVTVGSVFTADQF---YNDDSQIEKLAKYGV 194
>pdb|2CF5|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol
Dehydrogenases, Atcad5
pdb|2CF6|A Chain A, Crystal Structures Of The Arabidopsis Cinnamyl Alcohol
Dehydrogenases Atcad5
Length = 357
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 119 KQVKWVLKKPSGVIAAWTYTMPE 141
K W + PSG+++ +TYT+ E
Sbjct: 9 KTTGWAARDPSGILSPYTYTLRE 31
>pdb|3CCF|A Chain A, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
pdb|3CCF|B Chain B, Crystal Structure Of Putative Methyltransferase
(Yp_321342.1) From Anabaena Variabilis Atcc 29413 At
1.90 A Resolution
Length = 279
Score = 27.7 bits (60), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 10/99 (10%)
Query: 19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK-LPNI 77
Y ++L +L+ + + L D+G +GQ +AQ V+ TD + ++ A + P++
Sbjct: 45 YGEDLLQLLNPQPGEFIL--DLGCGTGQLTEKIAQSGAEVLGTDNAATXIEKARQNYPHL 102
Query: 78 RYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQ 116
+ + +N +D V + LHW P+
Sbjct: 103 HFDVADA-------RNFRVDKPLDAVFSNAXLHWVKEPE 134
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,863,707
Number of Sequences: 62578
Number of extensions: 326537
Number of successful extensions: 844
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 14
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)