Query 037961
Match_columns 262
No_of_seqs 212 out of 2308
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 06:09:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037961.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037961hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3010 Methyltransferase [Gen 100.0 3E-45 6.4E-50 293.6 18.4 258 1-261 1-261 (261)
2 PRK10258 biotin biosynthesis p 99.9 3.4E-24 7.4E-29 180.8 19.2 236 2-260 10-250 (251)
3 COG2226 UbiE Methylase involve 99.9 1.6E-22 3.4E-27 166.6 15.1 144 2-153 14-172 (238)
4 PRK14103 trans-aconitate 2-met 99.9 2.1E-21 4.5E-26 164.1 18.4 211 32-261 28-254 (255)
5 PF01209 Ubie_methyltran: ubiE 99.9 5.8E-22 1.3E-26 164.5 9.7 143 2-152 10-168 (233)
6 PRK01683 trans-aconitate 2-met 99.9 3.2E-20 6.9E-25 157.2 18.0 235 8-261 5-257 (258)
7 PLN02233 ubiquinone biosynthes 99.8 6.3E-20 1.4E-24 155.3 14.8 130 3-139 37-185 (261)
8 PRK05785 hypothetical protein; 99.8 1.7E-19 3.8E-24 149.5 15.0 119 2-129 12-140 (226)
9 TIGR02072 BioC biotin biosynth 99.8 2.7E-19 5.9E-24 149.3 16.2 228 4-260 1-240 (240)
10 PLN02244 tocopherol O-methyltr 99.8 3.9E-19 8.5E-24 156.0 16.5 99 32-137 117-224 (340)
11 PF08241 Methyltransf_11: Meth 99.8 5.6E-20 1.2E-24 131.2 8.7 90 38-134 1-95 (95)
12 COG4106 Tam Trans-aconitate me 99.8 3.4E-19 7.4E-24 141.3 12.2 216 26-261 21-256 (257)
13 PRK11036 putative S-adenosyl-L 99.8 1.1E-18 2.4E-23 147.5 13.3 130 2-138 3-151 (255)
14 PF13489 Methyltransf_23: Meth 99.8 3.2E-18 6.9E-23 134.2 10.3 116 12-138 1-117 (161)
15 PRK08317 hypothetical protein; 99.8 1.5E-16 3.2E-21 132.7 20.9 109 22-137 6-125 (241)
16 PLN02396 hexaprenyldihydroxybe 99.8 8.6E-18 1.9E-22 145.5 12.7 99 33-138 131-237 (322)
17 COG2227 UbiG 2-polyprenyl-3-me 99.8 3.4E-18 7.3E-23 138.8 9.3 105 33-139 59-164 (243)
18 TIGR02752 MenG_heptapren 2-hep 99.8 1.9E-17 4.2E-22 137.8 13.7 132 2-140 8-155 (231)
19 KOG1540 Ubiquinone biosynthesi 99.7 2.2E-17 4.8E-22 134.2 12.0 145 3-155 64-232 (296)
20 PTZ00098 phosphoethanolamine N 99.7 2E-16 4.3E-21 134.1 16.4 99 32-137 51-157 (263)
21 PRK15451 tRNA cmo(5)U34 methyl 99.7 1.5E-16 3.2E-21 133.8 12.8 124 4-136 19-164 (247)
22 PRK11207 tellurite resistance 99.7 2.4E-16 5.3E-21 128.1 12.6 111 15-135 13-133 (197)
23 PF12847 Methyltransf_18: Meth 99.7 1.7E-16 3.6E-21 117.1 10.0 96 33-135 1-110 (112)
24 PRK11088 rrmA 23S rRNA methylt 99.7 1.6E-15 3.5E-20 129.3 17.2 189 22-256 73-268 (272)
25 PF13847 Methyltransf_31: Meth 99.7 1.7E-16 3.6E-21 123.8 10.1 98 33-138 3-112 (152)
26 PLN02336 phosphoethanolamine N 99.7 7.9E-16 1.7E-20 141.2 15.3 99 32-137 265-370 (475)
27 KOG4300 Predicted methyltransf 99.7 4.8E-16 1E-20 122.7 11.6 128 19-154 60-199 (252)
28 PF08242 Methyltransf_12: Meth 99.7 2.5E-17 5.3E-22 119.0 2.4 90 38-132 1-99 (99)
29 KOG1270 Methyltransferases [Co 99.7 2E-16 4.4E-21 129.4 7.8 100 34-139 90-198 (282)
30 PLN02490 MPBQ/MSBQ methyltrans 99.7 7.9E-16 1.7E-20 133.8 11.6 124 6-136 81-215 (340)
31 TIGR00477 tehB tellurite resis 99.7 8.1E-16 1.8E-20 124.8 11.0 95 33-135 30-132 (195)
32 TIGR00740 methyltransferase, p 99.7 1.2E-15 2.6E-20 127.8 12.0 124 4-137 16-162 (239)
33 PRK15068 tRNA mo(5)U34 methylt 99.6 1.5E-15 3.2E-20 132.2 12.3 103 25-135 112-225 (322)
34 PF13649 Methyltransf_25: Meth 99.6 5.3E-16 1.2E-20 112.5 6.9 87 37-130 1-101 (101)
35 TIGR00452 methyltransferase, p 99.6 4.8E-15 1E-19 127.9 12.8 103 26-136 112-225 (314)
36 PRK00216 ubiE ubiquinone/menaq 99.6 1.2E-14 2.5E-19 121.3 14.8 129 3-138 15-160 (239)
37 TIGR03587 Pse_Me-ase pseudamin 99.6 8.6E-15 1.9E-19 119.4 13.2 102 26-137 36-143 (204)
38 PRK11873 arsM arsenite S-adeno 99.6 5.7E-15 1.2E-19 126.0 12.1 99 32-137 76-184 (272)
39 PRK06922 hypothetical protein; 99.6 3.1E-15 6.8E-20 137.9 9.8 97 33-136 418-537 (677)
40 TIGR01934 MenG_MenH_UbiE ubiqu 99.6 2.4E-14 5.1E-19 118.2 13.9 130 2-138 2-145 (223)
41 PRK00121 trmB tRNA (guanine-N( 99.6 5.1E-15 1.1E-19 120.8 8.9 99 33-138 40-158 (202)
42 TIGR03840 TMPT_Se_Te thiopurin 99.6 3.8E-14 8.1E-19 116.3 13.0 111 20-137 19-153 (213)
43 PRK00107 gidB 16S rRNA methylt 99.6 2.4E-14 5.2E-19 115.0 11.4 97 29-136 41-145 (187)
44 smart00138 MeTrc Methyltransfe 99.6 1.1E-14 2.5E-19 123.3 9.9 95 33-134 99-240 (264)
45 PRK06202 hypothetical protein; 99.6 1.5E-14 3.3E-19 120.5 10.2 89 32-126 59-159 (232)
46 PRK12335 tellurite resistance 99.6 3.5E-14 7.6E-19 122.0 12.5 105 21-135 110-222 (287)
47 PRK11188 rrmJ 23S rRNA methylt 99.6 3.2E-14 6.9E-19 116.6 11.5 106 31-142 49-171 (209)
48 PF05401 NodS: Nodulation prot 99.5 2.4E-14 5.2E-19 113.4 8.6 98 33-138 43-148 (201)
49 COG2230 Cfa Cyclopropane fatty 99.5 4.4E-14 9.6E-19 118.7 10.5 106 24-139 61-179 (283)
50 PLN02336 phosphoethanolamine N 99.5 3.8E-14 8.3E-19 130.1 10.9 98 33-135 37-141 (475)
51 TIGR00138 gidB 16S rRNA methyl 99.5 7.3E-14 1.6E-18 111.9 11.1 114 11-136 14-142 (181)
52 PF05175 MTS: Methyltransferas 99.5 1.1E-13 2.5E-18 109.8 12.0 111 33-151 31-155 (170)
53 KOG2940 Predicted methyltransf 99.5 1.5E-13 3.3E-18 110.3 12.5 240 4-261 30-297 (325)
54 PF02353 CMAS: Mycolic acid cy 99.5 9.7E-14 2.1E-18 117.9 11.9 101 24-134 51-164 (273)
55 smart00828 PKS_MT Methyltransf 99.5 5.6E-14 1.2E-18 116.4 9.4 94 36-137 2-105 (224)
56 PRK11705 cyclopropane fatty ac 99.5 1.7E-13 3.6E-18 122.0 11.7 105 24-138 156-269 (383)
57 TIGR02081 metW methionine bios 99.5 1.6E-13 3.4E-18 111.4 10.3 95 25-126 5-103 (194)
58 TIGR02469 CbiT precorrin-6Y C5 99.5 4.3E-13 9.3E-18 100.4 12.0 107 21-136 5-122 (124)
59 PF03848 TehB: Tellurite resis 99.5 2.5E-13 5.4E-18 108.7 10.7 96 33-136 30-133 (192)
60 TIGR00091 tRNA (guanine-N(7)-) 99.5 2.6E-13 5.6E-18 110.1 10.3 98 33-137 16-133 (194)
61 PF07021 MetW: Methionine bios 99.5 3.5E-13 7.6E-18 106.6 10.5 96 25-126 5-103 (193)
62 PRK15001 SAM-dependent 23S rib 99.5 6.6E-13 1.4E-17 117.2 12.6 118 25-150 218-354 (378)
63 PRK09489 rsmC 16S ribosomal RN 99.5 7.4E-13 1.6E-17 116.0 12.5 108 34-150 197-317 (342)
64 TIGR01983 UbiG ubiquinone bios 99.5 7E-13 1.5E-17 109.8 11.6 98 33-137 45-150 (224)
65 TIGR00537 hemK_rel_arch HemK-r 99.5 9.2E-13 2E-17 105.4 11.8 97 33-138 19-142 (179)
66 TIGR02021 BchM-ChlM magnesium 99.5 5.8E-13 1.3E-17 110.0 10.7 93 32-134 54-156 (219)
67 PRK05134 bifunctional 3-demeth 99.4 2.1E-12 4.5E-17 107.7 13.8 107 24-137 37-152 (233)
68 COG4976 Predicted methyltransf 99.4 1.7E-13 3.7E-18 110.0 6.8 128 3-136 89-225 (287)
69 PF08003 Methyltransf_9: Prote 99.4 5.5E-13 1.2E-17 112.3 9.4 149 24-184 104-264 (315)
70 PRK13944 protein-L-isoaspartat 99.4 1.8E-12 3.8E-17 106.1 11.6 101 22-134 59-171 (205)
71 PRK13255 thiopurine S-methyltr 99.4 1.2E-12 2.5E-17 107.9 10.4 96 32-134 36-153 (218)
72 KOG1541 Predicted protein carb 99.4 5.8E-13 1.3E-17 106.4 8.1 100 33-138 50-162 (270)
73 PRK13942 protein-L-isoaspartat 99.4 2.3E-12 5E-17 105.9 11.6 102 21-134 62-174 (212)
74 PRK14967 putative methyltransf 99.4 5.4E-12 1.2E-16 104.5 13.7 116 15-138 16-161 (223)
75 PRK04266 fibrillarin; Provisio 99.4 2E-12 4.4E-17 106.9 11.0 98 32-134 71-174 (226)
76 PF13659 Methyltransf_26: Meth 99.4 1.1E-12 2.4E-17 97.4 8.3 95 35-136 2-115 (117)
77 TIGR03438 probable methyltrans 99.4 2.8E-12 6.1E-17 110.9 11.7 104 24-134 54-175 (301)
78 TIGR00438 rrmJ cell division p 99.4 3E-12 6.4E-17 103.3 10.7 104 30-139 29-149 (188)
79 TIGR00080 pimt protein-L-isoas 99.4 3.9E-12 8.5E-17 104.8 11.5 101 23-135 65-176 (215)
80 TIGR00406 prmA ribosomal prote 99.4 1E-12 2.2E-17 113.0 8.2 104 24-138 150-261 (288)
81 PRK08287 cobalt-precorrin-6Y C 99.4 9.3E-12 2E-16 100.3 12.4 110 16-136 12-131 (187)
82 PRK14121 tRNA (guanine-N(7)-)- 99.4 5.1E-12 1.1E-16 111.2 11.2 100 33-139 122-238 (390)
83 PRK00517 prmA ribosomal protei 99.4 2.3E-12 5E-17 108.6 8.7 104 22-138 108-215 (250)
84 TIGR01177 conserved hypothetic 99.4 1.1E-11 2.4E-16 108.6 13.2 114 21-141 168-299 (329)
85 PLN03075 nicotianamine synthas 99.3 1.2E-11 2.5E-16 105.2 12.1 94 33-134 123-231 (296)
86 PRK00312 pcm protein-L-isoaspa 99.3 1.2E-11 2.6E-16 101.7 11.6 104 21-136 64-175 (212)
87 PLN02232 ubiquinone biosynthes 99.3 3.2E-12 7E-17 100.4 7.8 74 59-139 1-84 (160)
88 PRK07580 Mg-protoporphyrin IX 99.3 1E-11 2.2E-16 103.2 11.2 91 32-132 62-162 (230)
89 COG2264 PrmA Ribosomal protein 99.3 3E-12 6.4E-17 108.6 7.4 108 24-137 153-264 (300)
90 PHA03411 putative methyltransf 99.3 2.9E-11 6.3E-16 101.4 13.1 128 20-155 51-207 (279)
91 PLN02585 magnesium protoporphy 99.3 1.9E-11 4.1E-16 105.8 12.3 92 33-135 144-249 (315)
92 PTZ00146 fibrillarin; Provisio 99.3 2.1E-11 4.5E-16 103.3 12.2 117 12-134 107-235 (293)
93 PRK00811 spermidine synthase; 99.3 3.3E-11 7.1E-16 103.2 12.9 100 30-136 73-191 (283)
94 TIGR03534 RF_mod_PrmC protein- 99.3 3.2E-11 7E-16 101.4 11.9 107 21-135 74-216 (251)
95 PRK00377 cbiT cobalt-precorrin 99.3 5.3E-11 1.2E-15 96.8 12.4 107 21-136 26-145 (198)
96 PRK07402 precorrin-6B methylas 99.3 8.4E-11 1.8E-15 95.5 13.3 112 17-138 22-144 (196)
97 TIGR02716 C20_methyl_CrtF C-20 99.3 5.2E-11 1.1E-15 103.3 12.8 96 32-137 148-255 (306)
98 PRK14968 putative methyltransf 99.3 4.1E-11 8.8E-16 96.3 11.0 97 32-136 22-148 (188)
99 PRK01581 speE spermidine synth 99.3 8E-11 1.7E-15 102.4 12.9 112 19-137 136-269 (374)
100 cd02440 AdoMet_MTases S-adenos 99.3 6.7E-11 1.4E-15 84.5 10.5 93 36-135 1-103 (107)
101 PF06325 PrmA: Ribosomal prote 99.2 1.1E-11 2.3E-16 106.0 5.4 106 23-139 151-262 (295)
102 TIGR03533 L3_gln_methyl protei 99.2 1.5E-10 3.3E-15 99.2 12.5 94 33-134 121-249 (284)
103 PF05219 DREV: DREV methyltran 99.2 1.4E-10 3E-15 95.8 11.3 92 33-134 94-186 (265)
104 PRK14966 unknown domain/N5-glu 99.2 1.3E-10 2.8E-15 103.1 11.9 107 21-134 239-379 (423)
105 PRK13256 thiopurine S-methyltr 99.2 3.3E-10 7.2E-15 93.2 13.6 111 20-137 29-164 (226)
106 PRK04457 spermidine synthase; 99.2 1.7E-10 3.7E-15 97.7 12.2 95 32-134 65-175 (262)
107 COG4123 Predicted O-methyltran 99.2 8.7E-11 1.9E-15 97.2 9.9 98 32-136 43-170 (248)
108 PRK11805 N5-glutamine S-adenos 99.2 1.7E-10 3.6E-15 99.9 12.1 92 35-134 135-261 (307)
109 smart00650 rADc Ribosomal RNA 99.2 7.5E-11 1.6E-15 93.5 8.8 94 32-134 12-111 (169)
110 PHA03412 putative methyltransf 99.2 2.8E-10 6E-15 93.5 11.9 106 20-134 36-160 (241)
111 COG2813 RsmC 16S RNA G1207 met 99.2 4.2E-11 9E-16 101.1 7.3 119 26-153 149-283 (300)
112 TIGR00536 hemK_fam HemK family 99.2 3.8E-10 8.2E-15 96.9 11.7 106 21-134 99-242 (284)
113 PRK03612 spermidine synthase; 99.2 5E-10 1.1E-14 103.7 13.2 111 19-136 283-415 (521)
114 PF03291 Pox_MCEL: mRNA cappin 99.2 1.6E-10 3.4E-15 100.7 9.1 105 33-139 62-189 (331)
115 TIGR00417 speE spermidine synt 99.1 6.7E-10 1.5E-14 94.6 12.7 98 32-136 71-186 (270)
116 PRK09328 N5-glutamine S-adenos 99.1 6.6E-10 1.4E-14 94.8 12.6 106 21-134 94-236 (275)
117 PRK13943 protein-L-isoaspartat 99.1 6.9E-10 1.5E-14 96.3 12.5 102 21-134 66-178 (322)
118 COG2242 CobL Precorrin-6B meth 99.1 1.1E-09 2.4E-14 86.3 12.4 104 21-134 20-133 (187)
119 PF06080 DUF938: Protein of un 99.1 3.5E-10 7.6E-15 90.8 9.3 110 21-138 12-143 (204)
120 PLN02366 spermidine synthase 99.1 1.2E-09 2.5E-14 94.4 13.1 98 30-134 88-204 (308)
121 TIGR03704 PrmC_rel_meth putati 99.1 1.2E-09 2.6E-14 92.1 11.9 109 21-136 71-216 (251)
122 KOG2361 Predicted methyltransf 99.1 2.3E-10 4.9E-15 93.0 6.8 104 35-141 73-188 (264)
123 KOG2899 Predicted methyltransf 99.1 5E-10 1.1E-14 91.0 8.7 112 20-134 45-207 (288)
124 KOG3045 Predicted RNA methylas 99.1 3.4E-10 7.4E-15 92.7 7.0 87 32-137 179-265 (325)
125 PRK01544 bifunctional N5-gluta 99.1 1.3E-09 2.7E-14 100.6 11.6 93 34-134 139-267 (506)
126 PRK10901 16S rRNA methyltransf 99.1 1.3E-09 2.7E-14 98.9 11.3 100 32-138 243-374 (427)
127 COG2518 Pcm Protein-L-isoaspar 99.1 1.1E-09 2.4E-14 88.1 9.5 91 32-134 71-167 (209)
128 KOG1271 Methyltransferases [Ge 99.1 1.5E-09 3.3E-14 84.5 9.8 113 21-140 49-185 (227)
129 PRK13168 rumA 23S rRNA m(5)U19 99.1 1.3E-09 2.8E-14 99.3 11.0 122 21-149 283-412 (443)
130 PF05148 Methyltransf_8: Hypot 99.0 1.2E-09 2.6E-14 87.5 9.2 106 32-155 71-178 (219)
131 PRK15128 23S rRNA m(5)C1962 me 99.0 3.1E-09 6.7E-14 94.9 12.9 118 32-152 219-355 (396)
132 KOG1975 mRNA cap methyltransfe 99.0 6.7E-10 1.5E-14 93.7 7.9 109 29-139 113-240 (389)
133 PF01135 PCMT: Protein-L-isoas 99.0 9.6E-10 2.1E-14 89.8 8.5 100 23-134 60-170 (209)
134 PRK14904 16S rRNA methyltransf 99.0 3E-09 6.4E-14 96.9 12.5 99 32-138 249-379 (445)
135 PF05891 Methyltransf_PK: AdoM 99.0 9.3E-10 2E-14 88.9 8.0 95 33-134 55-159 (218)
136 TIGR00446 nop2p NOL1/NOP2/sun 99.0 3.9E-09 8.5E-14 89.6 12.0 100 32-138 70-201 (264)
137 PRK14903 16S rRNA methyltransf 99.0 2.3E-09 4.9E-14 97.1 11.0 100 32-138 236-368 (431)
138 PRK14901 16S rRNA methyltransf 99.0 2.4E-09 5.2E-14 97.2 11.1 100 32-138 251-386 (434)
139 PRK03522 rumB 23S rRNA methylu 99.0 4.7E-09 1E-13 91.4 12.2 118 22-149 160-286 (315)
140 PF05724 TPMT: Thiopurine S-me 99.0 2.4E-09 5.2E-14 88.1 9.5 108 20-134 23-153 (218)
141 PRK10909 rsmD 16S rRNA m(2)G96 99.0 7.3E-09 1.6E-13 84.0 11.5 115 15-137 33-160 (199)
142 PF00891 Methyltransf_2: O-met 99.0 5.2E-09 1.1E-13 87.7 10.6 95 32-137 99-200 (241)
143 PLN02781 Probable caffeoyl-CoA 99.0 7.5E-09 1.6E-13 86.3 11.0 98 32-134 67-176 (234)
144 TIGR00563 rsmB ribosomal RNA s 98.9 6.1E-09 1.3E-13 94.4 10.9 102 32-138 237-370 (426)
145 PRK11783 rlmL 23S rRNA m(2)G24 98.9 4.9E-09 1.1E-13 100.4 10.7 101 32-138 537-658 (702)
146 PRK14902 16S rRNA methyltransf 98.9 6.3E-09 1.4E-13 94.8 10.8 99 32-138 249-381 (444)
147 TIGR00478 tly hemolysin TlyA f 98.9 1.2E-08 2.6E-13 84.3 10.5 93 33-134 75-169 (228)
148 PF02390 Methyltransf_4: Putat 98.9 1.6E-08 3.5E-13 81.9 10.7 100 35-138 19-135 (195)
149 PRK00274 ksgA 16S ribosomal RN 98.9 6.6E-09 1.4E-13 88.6 8.7 84 20-109 27-115 (272)
150 COG2890 HemK Methylase of poly 98.9 2.4E-08 5.1E-13 85.4 11.2 121 21-153 97-253 (280)
151 COG2519 GCD14 tRNA(1-methylade 98.9 2.2E-08 4.8E-13 82.5 10.3 114 15-140 75-199 (256)
152 TIGR00479 rumA 23S rRNA (uraci 98.9 1E-08 2.2E-13 93.2 9.0 111 19-134 276-394 (431)
153 PRK14896 ksgA 16S ribosomal RN 98.8 1.5E-08 3.3E-13 85.8 9.2 84 21-112 15-104 (258)
154 PF01739 CheR: CheR methyltran 98.8 1.4E-08 3E-13 82.1 8.1 95 33-134 31-173 (196)
155 TIGR00755 ksgA dimethyladenosi 98.8 3.7E-08 7.9E-13 83.2 11.0 83 21-111 15-106 (253)
156 PRK10611 chemotaxis methyltran 98.8 3.7E-08 8E-13 84.1 10.9 100 34-134 116-260 (287)
157 PF10294 Methyltransf_16: Puta 98.8 1.9E-08 4E-13 80.1 8.0 99 32-134 44-154 (173)
158 PF05185 PRMT5: PRMT5 arginine 98.8 1.2E-08 2.6E-13 92.4 7.8 119 3-133 154-294 (448)
159 COG3963 Phospholipid N-methylt 98.8 9.4E-08 2E-12 73.6 11.4 114 23-139 36-159 (194)
160 KOG1331 Predicted methyltransf 98.8 9.8E-09 2.1E-13 85.6 6.1 124 5-138 18-145 (293)
161 PF03141 Methyltransf_29: Puta 98.8 5.7E-09 1.2E-13 93.4 5.0 98 33-136 117-219 (506)
162 TIGR02085 meth_trns_rumB 23S r 98.8 4.9E-08 1.1E-12 87.0 11.0 119 21-149 219-346 (374)
163 KOG1499 Protein arginine N-met 98.8 1.5E-08 3.3E-13 86.9 6.8 93 33-133 60-164 (346)
164 PLN02823 spermine synthase 98.8 8.3E-08 1.8E-12 83.8 11.6 111 19-136 89-220 (336)
165 PTZ00338 dimethyladenosine tra 98.8 4.3E-08 9.4E-13 84.2 9.7 85 21-113 22-115 (294)
166 TIGR00095 RNA methyltransferas 98.8 1.1E-07 2.4E-12 76.7 11.3 108 23-134 40-157 (189)
167 COG4122 Predicted O-methyltran 98.8 8.6E-08 1.9E-12 78.3 10.3 95 32-134 58-164 (219)
168 COG0220 Predicted S-adenosylme 98.8 1.8E-07 3.8E-12 77.3 12.3 100 35-138 50-166 (227)
169 COG1041 Predicted DNA modifica 98.7 8.4E-08 1.8E-12 82.8 10.6 114 18-137 180-311 (347)
170 COG2263 Predicted RNA methylas 98.7 4.5E-08 9.9E-13 77.1 8.0 85 33-126 45-138 (198)
171 PLN02476 O-methyltransferase 98.7 9.9E-08 2.2E-12 80.9 10.4 98 32-134 117-226 (278)
172 PRK04148 hypothetical protein; 98.7 2.9E-07 6.2E-12 69.3 11.5 106 22-138 3-111 (134)
173 PF08704 GCD14: tRNA methyltra 98.7 1.8E-07 3.9E-12 78.1 11.3 112 18-140 24-150 (247)
174 PF01596 Methyltransf_3: O-met 98.7 7.5E-08 1.6E-12 78.4 8.2 105 24-134 37-153 (205)
175 COG1092 Predicted SAM-dependen 98.7 1.3E-07 2.7E-12 83.9 9.9 121 26-150 211-350 (393)
176 KOG1500 Protein arginine N-met 98.7 1.1E-07 2.5E-12 80.8 9.1 92 33-133 177-279 (517)
177 PF03602 Cons_hypoth95: Conser 98.7 5.9E-08 1.3E-12 77.7 6.8 119 14-135 20-152 (183)
178 PRK00536 speE spermidine synth 98.7 3.2E-07 6.9E-12 77.3 11.2 102 19-134 58-169 (262)
179 COG1352 CheR Methylase of chem 98.6 4.8E-07 1E-11 76.3 11.9 101 33-134 96-239 (268)
180 KOG1661 Protein-L-isoaspartate 98.6 2.2E-07 4.7E-12 74.3 8.5 102 21-134 70-191 (237)
181 PLN02672 methionine S-methyltr 98.6 2E-07 4.4E-12 91.8 10.0 94 34-134 119-276 (1082)
182 PF01564 Spermine_synth: Sperm 98.6 4.6E-07 1E-11 76.1 10.9 111 19-136 62-191 (246)
183 KOG2904 Predicted methyltransf 98.6 1.2E-06 2.6E-11 72.8 11.7 113 21-136 131-285 (328)
184 PLN02589 caffeoyl-CoA O-methyl 98.6 5.5E-07 1.2E-11 75.4 9.9 97 33-134 79-188 (247)
185 TIGR02143 trmA_only tRNA (urac 98.5 1.8E-07 3.9E-12 82.7 7.1 119 21-150 184-324 (353)
186 KOG0820 Ribosomal RNA adenine 98.5 3.9E-07 8.4E-12 75.6 8.3 82 21-110 44-134 (315)
187 KOG3987 Uncharacterized conser 98.5 4.3E-08 9.2E-13 78.0 2.6 93 33-134 112-205 (288)
188 PF01728 FtsJ: FtsJ-like methy 98.5 2.7E-07 5.8E-12 73.9 7.3 104 33-142 23-145 (181)
189 COG2521 Predicted archaeal met 98.5 2.2E-07 4.9E-12 75.4 6.6 101 32-139 133-248 (287)
190 PRK05031 tRNA (uracil-5-)-meth 98.5 2.4E-07 5.3E-12 82.2 7.2 123 20-149 192-332 (362)
191 COG0421 SpeE Spermidine syntha 98.5 1.2E-06 2.5E-11 74.7 11.0 96 32-135 75-189 (282)
192 COG0293 FtsJ 23S rRNA methylas 98.5 1.2E-06 2.6E-11 70.6 9.7 103 31-139 43-162 (205)
193 KOG1269 SAM-dependent methyltr 98.5 2.8E-07 6E-12 81.1 5.7 108 27-135 104-214 (364)
194 PF02475 Met_10: Met-10+ like- 98.5 9.5E-07 2.1E-11 71.6 8.4 98 25-133 93-199 (200)
195 COG0500 SmtA SAM-dependent met 98.4 2.4E-06 5.3E-11 65.1 10.2 94 37-138 52-157 (257)
196 PRK11727 23S rRNA mA1618 methy 98.4 7.1E-07 1.5E-11 77.4 7.4 77 33-112 114-202 (321)
197 COG0030 KsgA Dimethyladenosine 98.4 2E-06 4.2E-11 72.0 9.0 83 22-110 17-106 (259)
198 PRK04338 N(2),N(2)-dimethylgua 98.4 2.1E-06 4.6E-11 76.5 9.7 108 18-135 39-157 (382)
199 PRK01544 bifunctional N5-gluta 98.3 3.3E-06 7.2E-11 78.1 10.4 101 33-138 347-464 (506)
200 KOG3178 Hydroxyindole-O-methyl 98.3 2.3E-06 4.9E-11 73.8 8.6 94 34-137 178-276 (342)
201 PF10672 Methyltrans_SAM: S-ad 98.3 1.4E-06 3.1E-11 74.3 7.2 121 26-151 117-253 (286)
202 COG0742 N6-adenine-specific me 98.3 6.5E-06 1.4E-10 65.4 9.7 114 15-134 22-152 (187)
203 PF01170 UPF0020: Putative RNA 98.3 4.6E-06 1E-10 66.7 8.7 102 20-128 13-143 (179)
204 COG2265 TrmA SAM-dependent met 98.3 5.8E-06 1.2E-10 74.7 10.2 121 21-151 279-410 (432)
205 TIGR03439 methyl_EasF probable 98.3 2.1E-05 4.6E-10 68.3 13.1 105 26-134 69-195 (319)
206 PRK00050 16S rRNA m(4)C1402 me 98.3 4.8E-06 1E-10 71.4 8.8 90 15-109 3-100 (296)
207 PF05958 tRNA_U5-meth_tr: tRNA 98.3 2.7E-06 5.7E-11 75.3 7.5 123 21-151 183-324 (352)
208 PF09243 Rsm22: Mitochondrial 98.3 1.5E-05 3.3E-10 68.0 11.9 116 22-141 20-144 (274)
209 PRK11760 putative 23S rRNA C24 98.3 6.3E-06 1.4E-10 71.3 9.3 96 32-138 210-306 (357)
210 KOG3420 Predicted RNA methylas 98.3 2E-06 4.3E-11 64.8 5.4 90 16-111 29-126 (185)
211 KOG3191 Predicted N6-DNA-methy 98.2 1.2E-05 2.6E-10 63.0 9.6 99 33-139 43-171 (209)
212 COG1189 Predicted rRNA methyla 98.2 2E-05 4.4E-10 64.5 10.0 97 32-134 78-176 (245)
213 PF02527 GidB: rRNA small subu 98.2 2.3E-05 4.9E-10 62.8 10.1 90 36-136 51-148 (184)
214 PF12147 Methyltransf_20: Puta 98.1 9.8E-05 2.1E-09 62.4 13.5 117 32-153 134-266 (311)
215 COG2520 Predicted methyltransf 98.1 9.7E-06 2.1E-10 70.5 7.6 104 26-139 181-292 (341)
216 PF00398 RrnaAD: Ribosomal RNA 98.1 2.1E-05 4.4E-10 66.8 8.6 98 21-126 16-122 (262)
217 PF09445 Methyltransf_15: RNA 98.1 7.8E-06 1.7E-10 63.9 5.4 72 35-109 1-79 (163)
218 KOG1663 O-methyltransferase [S 98.0 6.2E-05 1.3E-09 61.3 10.1 97 33-134 73-181 (237)
219 PF02384 N6_Mtase: N-6 DNA Met 98.0 1.7E-05 3.8E-10 68.9 7.5 112 20-137 31-184 (311)
220 PRK11933 yebU rRNA (cytosine-C 98.0 7.5E-05 1.6E-09 68.3 11.8 100 32-138 112-244 (470)
221 KOG1709 Guanidinoacetate methy 97.9 9.3E-05 2E-09 59.6 9.6 108 24-137 91-207 (271)
222 PF08123 DOT1: Histone methyla 97.9 3.7E-05 8.1E-10 62.6 7.0 107 24-134 31-156 (205)
223 PF07942 N2227: N2227-like pro 97.9 0.0001 2.3E-09 62.2 9.3 112 21-133 38-199 (270)
224 TIGR02987 met_A_Alw26 type II 97.9 8.2E-05 1.8E-09 69.4 9.5 90 20-110 9-123 (524)
225 KOG2352 Predicted spermine/spe 97.9 0.0002 4.3E-09 64.5 11.4 110 21-137 35-162 (482)
226 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.8 3.2E-05 6.9E-10 64.9 5.8 98 33-137 56-200 (256)
227 PF11968 DUF3321: Putative met 97.8 0.00014 3E-09 59.0 8.4 118 21-155 33-174 (219)
228 PF04672 Methyltransf_19: S-ad 97.8 0.00012 2.5E-09 61.6 8.2 135 35-174 70-227 (267)
229 COG0357 GidB Predicted S-adeno 97.7 0.00035 7.6E-09 57.1 10.2 116 8-134 34-166 (215)
230 TIGR00308 TRM1 tRNA(guanine-26 97.7 0.00028 6E-09 62.8 10.4 92 35-136 46-147 (374)
231 PF01269 Fibrillarin: Fibrilla 97.7 0.00053 1.1E-08 55.9 9.9 109 21-136 56-178 (229)
232 COG4076 Predicted RNA methylas 97.6 0.00011 2.5E-09 57.9 5.6 90 35-133 34-132 (252)
233 COG0144 Sun tRNA and rRNA cyto 97.6 0.00069 1.5E-08 60.0 10.7 103 32-138 155-290 (355)
234 KOG2187 tRNA uracil-5-methyltr 97.6 0.00018 3.9E-09 65.1 6.5 63 21-83 369-439 (534)
235 COG4262 Predicted spermidine s 97.5 0.00043 9.4E-09 60.1 8.0 109 19-134 275-405 (508)
236 COG3897 Predicted methyltransf 97.5 0.0012 2.6E-08 52.6 9.8 108 24-140 68-183 (218)
237 KOG2730 Methylase [General fun 97.5 0.00014 3E-09 58.8 4.5 87 20-108 78-174 (263)
238 PRK11783 rlmL 23S rRNA m(2)G24 97.5 0.0015 3.2E-08 63.1 12.0 112 20-138 174-349 (702)
239 KOG4589 Cell division protein 97.3 0.0025 5.3E-08 50.5 9.6 95 32-134 68-182 (232)
240 PF13578 Methyltransf_24: Meth 97.3 0.00011 2.4E-09 53.2 2.1 92 38-134 1-103 (106)
241 TIGR01444 fkbM_fam methyltrans 97.3 0.00034 7.3E-09 53.4 4.7 38 36-73 1-40 (143)
242 PF13679 Methyltransf_32: Meth 97.3 0.00074 1.6E-08 51.7 6.5 42 32-73 24-71 (141)
243 PF03059 NAS: Nicotianamine sy 97.2 0.0028 6E-08 53.9 9.2 94 34-134 121-228 (276)
244 COG1063 Tdh Threonine dehydrog 97.1 0.0066 1.4E-07 53.8 11.0 100 33-139 168-272 (350)
245 COG0116 Predicted N6-adenine-s 97.1 0.0039 8.4E-08 55.1 9.3 84 21-110 177-310 (381)
246 KOG2915 tRNA(1-methyladenosine 97.0 0.0067 1.4E-07 50.9 9.1 95 31-134 103-208 (314)
247 PF01555 N6_N4_Mtase: DNA meth 97.0 0.0018 3.9E-08 53.2 5.8 59 15-73 172-231 (231)
248 PF05971 Methyltransf_10: Prot 96.9 0.0021 4.5E-08 55.2 5.8 77 34-112 103-190 (299)
249 cd08283 FDH_like_1 Glutathione 96.8 0.016 3.5E-07 51.9 11.4 103 32-136 183-306 (386)
250 COG1064 AdhP Zn-dependent alco 96.8 0.011 2.4E-07 51.6 9.5 96 31-138 164-261 (339)
251 TIGR00006 S-adenosyl-methyltra 96.8 0.011 2.3E-07 51.1 9.2 90 15-109 4-102 (305)
252 KOG3201 Uncharacterized conser 96.8 0.0015 3.3E-08 50.4 3.5 107 33-141 29-145 (201)
253 PRK11524 putative methyltransf 96.7 0.0041 8.9E-08 53.4 6.6 57 18-74 192-249 (284)
254 KOG1099 SAM-dependent methyltr 96.7 0.0024 5.2E-08 52.1 4.6 116 33-154 41-184 (294)
255 PRK10742 putative methyltransf 96.7 0.016 3.5E-07 48.3 9.6 86 36-126 91-191 (250)
256 PF07091 FmrO: Ribosomal RNA m 96.6 0.0055 1.2E-07 51.0 6.0 99 21-126 93-200 (251)
257 COG4798 Predicted methyltransf 96.6 0.0093 2E-07 47.6 6.8 100 31-138 46-168 (238)
258 PF04989 CmcI: Cephalosporin h 96.6 0.022 4.7E-07 46.2 9.1 115 18-134 16-145 (206)
259 PF00107 ADH_zinc_N: Zinc-bind 96.6 0.018 3.8E-07 42.9 8.2 90 43-139 1-92 (130)
260 PF04816 DUF633: Family of unk 96.6 0.0066 1.4E-07 49.5 6.2 89 37-134 1-99 (205)
261 COG5459 Predicted rRNA methyla 96.5 0.0096 2.1E-07 51.7 7.2 106 33-140 113-229 (484)
262 PRK13699 putative methylase; P 96.5 0.0085 1.8E-07 49.7 6.7 58 17-74 146-204 (227)
263 PF01189 Nol1_Nop2_Fmu: NOL1/N 96.5 0.011 2.4E-07 50.7 7.6 100 32-138 84-221 (283)
264 PRK09880 L-idonate 5-dehydroge 96.5 0.033 7.1E-07 49.0 10.7 96 33-137 169-267 (343)
265 PRK09424 pntA NAD(P) transhydr 96.5 0.026 5.6E-07 52.3 10.1 103 33-137 164-286 (509)
266 KOG0024 Sorbitol dehydrogenase 96.4 0.048 1E-06 47.1 10.8 101 32-139 168-276 (354)
267 PLN02668 indole-3-acetate carb 96.4 0.023 4.9E-07 50.7 8.7 25 89-113 152-176 (386)
268 cd08254 hydroxyacyl_CoA_DH 6-h 96.3 0.064 1.4E-06 46.6 11.5 100 31-138 163-265 (338)
269 KOG2798 Putative trehalase [Ca 96.2 0.027 5.8E-07 48.3 7.8 112 21-133 132-293 (369)
270 COG0286 HsdM Type I restrictio 96.1 0.065 1.4E-06 49.7 10.6 117 20-138 171-328 (489)
271 PF01795 Methyltransf_5: MraW 96.1 0.032 7E-07 48.2 7.9 90 15-109 4-103 (310)
272 KOG2793 Putative N2,N2-dimethy 96.0 0.056 1.2E-06 45.2 8.9 98 33-134 86-197 (248)
273 PHA01634 hypothetical protein 96.0 0.057 1.2E-06 40.2 7.7 70 33-105 28-98 (156)
274 PF03141 Methyltransf_29: Puta 95.9 0.014 2.9E-07 53.2 5.3 138 3-153 337-482 (506)
275 COG4627 Uncharacterized protei 95.8 0.0042 9.2E-08 47.7 1.3 44 93-137 41-87 (185)
276 KOG3115 Methyltransferase-like 95.8 0.029 6.2E-07 45.2 5.8 38 35-72 62-101 (249)
277 cd05188 MDR Medium chain reduc 95.7 0.14 3E-06 42.7 10.4 99 32-138 133-234 (271)
278 KOG1562 Spermidine synthase [A 95.7 0.027 5.9E-07 47.9 5.8 115 16-135 104-235 (337)
279 TIGR03451 mycoS_dep_FDH mycoth 95.6 0.18 3.9E-06 44.5 11.2 100 32-138 175-278 (358)
280 PF06962 rRNA_methylase: Putat 95.5 0.081 1.7E-06 40.3 7.2 79 57-140 1-97 (140)
281 PF04445 SAM_MT: Putative SAM- 95.3 0.014 3.1E-07 48.3 2.8 73 35-112 77-164 (234)
282 COG3129 Predicted SAM-dependen 95.2 0.034 7.3E-07 45.7 4.6 96 16-112 57-166 (292)
283 cd08230 glucose_DH Glucose deh 95.1 0.25 5.5E-06 43.5 10.3 96 32-138 171-271 (355)
284 KOG0822 Protein kinase inhibit 95.1 0.036 7.8E-07 50.7 4.8 120 3-134 336-476 (649)
285 TIGR01202 bchC 2-desacetyl-2-h 95.0 0.27 5.8E-06 42.6 10.1 86 33-137 144-232 (308)
286 TIGR02822 adh_fam_2 zinc-bindi 95.0 0.34 7.4E-06 42.3 10.8 91 31-137 163-255 (329)
287 COG2384 Predicted SAM-dependen 94.9 0.11 2.3E-06 42.5 6.7 77 24-106 7-92 (226)
288 cd08232 idonate-5-DH L-idonate 94.9 0.38 8.2E-06 41.9 11.0 96 33-137 165-263 (339)
289 PF06859 Bin3: Bicoid-interact 94.8 0.016 3.5E-07 41.9 1.7 35 99-134 1-42 (110)
290 cd08237 ribitol-5-phosphate_DH 94.8 0.25 5.3E-06 43.4 9.6 92 32-137 162-257 (341)
291 cd08239 THR_DH_like L-threonin 94.7 0.45 9.8E-06 41.5 11.0 99 32-137 162-263 (339)
292 cd08281 liver_ADH_like1 Zinc-d 94.7 0.4 8.8E-06 42.6 10.7 98 32-137 190-291 (371)
293 TIGR03366 HpnZ_proposed putati 94.7 0.39 8.6E-06 40.8 10.2 97 33-137 120-219 (280)
294 COG3510 CmcI Cephalosporin hyd 94.6 0.29 6.2E-06 39.2 8.3 116 19-136 54-180 (237)
295 KOG2198 tRNA cytosine-5-methyl 94.6 0.2 4.4E-06 44.0 8.2 107 32-139 154-299 (375)
296 PF03492 Methyltransf_7: SAM d 94.6 0.13 2.8E-06 45.3 7.1 79 31-112 14-120 (334)
297 PRK10309 galactitol-1-phosphat 94.6 0.52 1.1E-05 41.3 11.1 99 32-137 159-261 (347)
298 cd00315 Cyt_C5_DNA_methylase C 94.6 0.11 2.4E-06 44.4 6.5 68 36-110 2-73 (275)
299 KOG2920 Predicted methyltransf 94.5 0.025 5.4E-07 47.9 2.2 100 33-134 116-232 (282)
300 COG1889 NOP1 Fibrillarin-like 94.3 0.54 1.2E-05 38.0 9.3 116 11-134 50-178 (231)
301 PF11599 AviRa: RRNA methyltra 94.2 0.053 1.2E-06 44.1 3.5 59 15-73 27-95 (246)
302 cd05278 FDH_like Formaldehyde 94.2 0.67 1.5E-05 40.4 10.8 99 31-136 165-267 (347)
303 cd00401 AdoHcyase S-adenosyl-L 94.2 0.43 9.3E-06 43.2 9.6 100 22-139 187-292 (413)
304 COG4301 Uncharacterized conser 94.2 0.65 1.4E-05 38.8 9.7 96 33-134 78-191 (321)
305 cd08236 sugar_DH NAD(P)-depend 94.2 1.1 2.5E-05 39.0 12.2 100 31-137 157-259 (343)
306 PF07757 AdoMet_MTase: Predict 94.1 0.048 1E-06 39.3 2.7 32 33-64 58-89 (112)
307 TIGR00561 pntA NAD(P) transhyd 94.1 0.24 5.2E-06 46.0 7.9 99 33-134 163-282 (511)
308 cd08261 Zn_ADH7 Alcohol dehydr 94.0 0.83 1.8E-05 39.7 11.0 99 31-136 157-258 (337)
309 PLN02586 probable cinnamyl alc 93.9 0.46 9.9E-06 42.1 9.3 95 32-137 182-279 (360)
310 PLN03154 putative allyl alcoho 93.7 1.2 2.5E-05 39.4 11.5 98 31-137 156-259 (348)
311 PLN02740 Alcohol dehydrogenase 93.7 0.95 2E-05 40.4 10.9 99 31-137 196-301 (381)
312 KOG1501 Arginine N-methyltrans 93.6 0.094 2E-06 47.1 4.2 49 35-83 68-124 (636)
313 KOG1227 Putative methyltransfe 93.6 0.062 1.3E-06 45.8 2.8 103 27-134 188-295 (351)
314 TIGR02825 B4_12hDH leukotriene 93.5 1.3 2.8E-05 38.4 11.3 98 31-137 136-238 (325)
315 PF03686 UPF0146: Uncharacteri 93.5 0.45 9.9E-06 35.4 7.0 101 22-138 3-104 (127)
316 TIGR02819 fdhA_non_GSH formald 93.5 1.3 2.8E-05 39.9 11.4 103 32-137 184-300 (393)
317 COG0275 Predicted S-adenosylme 93.4 0.63 1.4E-05 40.0 8.7 90 16-110 8-107 (314)
318 cd08234 threonine_DH_like L-th 93.4 1.3 2.8E-05 38.4 11.1 99 32-138 158-259 (334)
319 cd08285 NADP_ADH NADP(H)-depen 93.1 1.5 3.3E-05 38.4 11.2 98 32-136 165-266 (351)
320 TIGR03201 dearomat_had 6-hydro 93.0 1.3 2.8E-05 38.9 10.6 100 32-138 165-274 (349)
321 KOG1098 Putative SAM-dependent 92.9 0.16 3.6E-06 47.4 4.7 98 30-134 41-156 (780)
322 cd08293 PTGR2 Prostaglandin re 92.8 1.4 3.1E-05 38.3 10.6 93 35-136 156-254 (345)
323 PLN02827 Alcohol dehydrogenase 92.6 1.5 3.3E-05 39.1 10.5 99 31-137 191-296 (378)
324 TIGR02818 adh_III_F_hyde S-(hy 92.5 1.7 3.6E-05 38.7 10.6 99 31-137 183-288 (368)
325 cd08294 leukotriene_B4_DH_like 92.3 2.5 5.3E-05 36.5 11.3 97 31-136 141-241 (329)
326 COG0604 Qor NADPH:quinone redu 92.3 3.2 6.9E-05 36.4 12.0 101 31-139 140-244 (326)
327 KOG2651 rRNA adenine N-6-methy 92.2 0.29 6.2E-06 43.3 5.0 41 33-73 153-194 (476)
328 cd08295 double_bond_reductase_ 92.1 2.4 5.3E-05 36.9 11.1 98 31-137 149-252 (338)
329 cd05285 sorbitol_DH Sorbitol d 92.1 2.3 5E-05 37.1 10.9 100 31-137 160-266 (343)
330 cd08300 alcohol_DH_class_III c 92.0 2.3 5E-05 37.7 11.0 99 31-137 184-289 (368)
331 COG1255 Uncharacterized protei 91.8 1.4 3.1E-05 32.2 7.4 96 25-136 6-102 (129)
332 PRK05708 2-dehydropantoate 2-r 91.7 2.1 4.7E-05 37.0 10.2 100 35-139 3-107 (305)
333 cd08245 CAD Cinnamyl alcohol d 91.7 4.1 8.8E-05 35.2 12.0 95 31-136 160-256 (330)
334 cd08291 ETR_like_1 2-enoyl thi 91.4 3.1 6.6E-05 36.0 10.9 89 41-137 152-243 (324)
335 PLN02178 cinnamyl-alcohol dehy 91.2 2 4.4E-05 38.3 9.8 95 32-137 177-274 (375)
336 cd08265 Zn_ADH3 Alcohol dehydr 91.1 3.5 7.7E-05 36.7 11.2 100 31-137 201-308 (384)
337 cd08263 Zn_ADH10 Alcohol dehyd 91.0 2.6 5.7E-05 37.2 10.2 99 32-137 186-288 (367)
338 cd08301 alcohol_DH_plants Plan 90.9 3 6.5E-05 36.9 10.6 100 31-138 185-291 (369)
339 cd08277 liver_alcohol_DH_like 90.9 3.1 6.8E-05 36.8 10.6 99 32-138 183-288 (365)
340 cd08278 benzyl_alcohol_DH Benz 90.8 3.4 7.3E-05 36.6 10.8 98 32-137 185-286 (365)
341 cd08233 butanediol_DH_like (2R 90.8 4.1 8.9E-05 35.6 11.3 98 32-137 171-273 (351)
342 PRK13699 putative methylase; P 90.8 0.32 7E-06 40.3 3.9 42 95-137 16-73 (227)
343 PRK01747 mnmC bifunctional tRN 90.7 0.74 1.6E-05 44.4 6.9 105 32-137 56-207 (662)
344 PF01861 DUF43: Protein of unk 90.7 2.4 5.3E-05 35.3 8.8 99 33-138 44-150 (243)
345 cd08255 2-desacetyl-2-hydroxye 90.6 3.4 7.4E-05 34.7 10.2 95 31-138 95-192 (277)
346 KOG1596 Fibrillarin and relate 90.6 1.2 2.7E-05 37.0 7.0 100 31-137 154-262 (317)
347 cd08286 FDH_like_ADH2 formalde 90.4 4.1 8.9E-05 35.5 10.9 99 32-137 165-267 (345)
348 cd08231 MDR_TM0436_like Hypoth 90.4 4.6 9.9E-05 35.5 11.2 98 33-137 177-281 (361)
349 PLN02514 cinnamyl-alcohol dehy 90.4 2.8 6E-05 37.0 9.8 96 32-137 179-276 (357)
350 KOG2352 Predicted spermine/spe 90.2 0.63 1.4E-05 42.5 5.5 110 33-146 295-427 (482)
351 cd08296 CAD_like Cinnamyl alco 90.1 4.6 0.0001 35.1 10.8 96 32-137 162-260 (333)
352 PRK11524 putative methyltransf 90.0 0.35 7.6E-06 41.5 3.6 41 95-136 23-80 (284)
353 PF00145 DNA_methylase: C-5 cy 90.0 0.35 7.5E-06 41.9 3.7 70 36-110 2-72 (335)
354 COG2933 Predicted SAM-dependen 89.9 1.8 3.9E-05 36.6 7.4 85 32-126 210-294 (358)
355 PF03269 DUF268: Caenorhabditi 89.7 0.6 1.3E-05 36.4 4.2 94 35-134 3-109 (177)
356 cd08289 MDR_yhfp_like Yhfp put 89.7 4.7 0.0001 34.7 10.5 95 33-137 146-244 (326)
357 cd08279 Zn_ADH_class_III Class 89.7 5.6 0.00012 35.1 11.2 99 32-137 181-283 (363)
358 cd08240 6_hydroxyhexanoate_dh_ 89.6 4.7 0.0001 35.2 10.6 95 33-136 175-274 (350)
359 PRK05396 tdh L-threonine 3-deh 89.6 5.8 0.00013 34.5 11.1 99 33-138 163-265 (341)
360 TIGR00692 tdh L-threonine 3-de 89.6 6.7 0.00015 34.1 11.5 99 32-137 160-262 (340)
361 cd05284 arabinose_DH_like D-ar 89.4 6.2 0.00013 34.2 11.1 99 32-137 166-267 (340)
362 cd08241 QOR1 Quinone oxidoredu 89.4 6.7 0.00015 33.2 11.2 99 31-137 137-239 (323)
363 COG0270 Dcm Site-specific DNA 89.2 1.5 3.2E-05 38.5 7.0 74 34-112 3-80 (328)
364 PTZ00357 methyltransferase; Pr 89.2 1.1 2.3E-05 42.9 6.2 127 3-131 643-830 (1072)
365 cd05281 TDH Threonine dehydrog 89.2 5.3 0.00011 34.8 10.6 98 32-136 162-262 (341)
366 PF02254 TrkA_N: TrkA-N domain 89.1 6.6 0.00014 28.2 9.5 87 42-136 4-96 (116)
367 KOG4058 Uncharacterized conser 89.1 0.56 1.2E-05 36.0 3.6 41 33-73 72-113 (199)
368 KOG1122 tRNA and rRNA cytosine 88.9 2.9 6.4E-05 37.6 8.4 101 33-138 241-373 (460)
369 cd08238 sorbose_phosphate_red 88.8 6.1 0.00013 35.7 10.9 97 32-135 174-287 (410)
370 cd08243 quinone_oxidoreductase 88.4 8.5 0.00018 32.7 11.2 95 32-137 141-239 (320)
371 PF02636 Methyltransf_28: Puta 88.3 0.73 1.6E-05 38.8 4.3 40 34-73 19-68 (252)
372 COG0686 Ald Alanine dehydrogen 88.3 2.2 4.8E-05 37.0 7.0 94 34-134 168-266 (371)
373 cd08242 MDR_like Medium chain 88.2 7.1 0.00015 33.5 10.7 88 32-134 154-243 (319)
374 cd05286 QOR2 Quinone oxidoredu 88.1 9.4 0.0002 32.2 11.3 97 32-137 135-236 (320)
375 cd08298 CAD2 Cinnamyl alcohol 88.0 7.6 0.00017 33.4 10.7 89 32-136 166-256 (329)
376 PRK07417 arogenate dehydrogena 87.8 2.9 6.3E-05 35.6 7.8 83 37-132 3-87 (279)
377 COG0569 TrkA K+ transport syst 87.5 3.2 7E-05 34.3 7.6 70 36-107 2-74 (225)
378 TIGR00518 alaDH alanine dehydr 87.4 2.3 5E-05 38.0 7.1 100 34-138 167-269 (370)
379 KOG2078 tRNA modification enzy 87.1 0.48 1E-05 42.5 2.5 49 25-73 241-289 (495)
380 cd08235 iditol_2_DH_like L-idi 87.0 10 0.00022 32.9 11.0 100 31-137 163-266 (343)
381 PF11899 DUF3419: Protein of u 86.7 1.4 3.1E-05 39.5 5.3 59 75-140 275-338 (380)
382 PF07652 Flavi_DEAD: Flaviviru 86.6 13 0.00028 28.6 9.8 105 34-139 5-136 (148)
383 PRK05476 S-adenosyl-L-homocyst 86.6 5 0.00011 36.5 8.8 90 33-140 211-303 (425)
384 PF03514 GRAS: GRAS domain fam 86.4 8.6 0.00019 34.4 10.2 120 33-153 110-264 (374)
385 cd08287 FDH_like_ADH3 formalde 86.3 11 0.00024 32.7 10.9 97 32-136 167-268 (345)
386 PRK10083 putative oxidoreducta 85.8 12 0.00025 32.5 10.7 98 32-138 159-261 (339)
387 cd08260 Zn_ADH6 Alcohol dehydr 85.7 10 0.00023 32.9 10.4 98 32-137 164-265 (345)
388 cd08269 Zn_ADH9 Alcohol dehydr 85.6 15 0.00033 31.1 11.3 99 32-137 128-230 (312)
389 TIGR00675 dcm DNA-methyltransf 85.3 2.3 5.1E-05 37.0 6.0 67 37-110 1-70 (315)
390 PRK09422 ethanol-active dehydr 85.3 11 0.00024 32.6 10.3 97 31-137 160-262 (338)
391 cd08282 PFDH_like Pseudomonas 85.2 15 0.00033 32.5 11.3 101 32-136 175-285 (375)
392 KOG2539 Mitochondrial/chloropl 85.1 5.6 0.00012 36.3 8.2 102 33-138 200-317 (491)
393 TIGR00936 ahcY adenosylhomocys 85.1 5.6 0.00012 36.0 8.3 101 22-140 180-286 (406)
394 PRK10458 DNA cytosine methylas 85.0 6.9 0.00015 36.1 9.0 40 34-73 88-128 (467)
395 cd08266 Zn_ADH_like1 Alcohol d 84.4 16 0.00034 31.3 10.8 97 32-136 165-265 (342)
396 cd05283 CAD1 Cinnamyl alcohol 84.0 13 0.00028 32.3 10.1 95 32-137 168-264 (337)
397 PTZ00354 alcohol dehydrogenase 83.9 19 0.00041 30.8 11.1 97 32-136 139-240 (334)
398 cd05280 MDR_yhdh_yhfp Yhdh and 83.8 16 0.00035 31.1 10.7 94 34-137 147-244 (325)
399 cd05279 Zn_ADH1 Liver alcohol 83.8 16 0.00034 32.3 10.7 99 32-137 182-286 (365)
400 PRK12742 oxidoreductase; Provi 83.7 18 0.00039 29.3 10.5 102 34-136 6-131 (237)
401 COG1062 AdhC Zn-dependent alco 83.7 19 0.0004 31.8 10.5 100 32-139 184-288 (366)
402 cd08268 MDR2 Medium chain dehy 83.7 20 0.00044 30.4 11.2 98 32-137 143-244 (328)
403 PRK10754 quinone oxidoreductas 83.6 21 0.00045 30.6 11.3 98 32-137 139-240 (327)
404 PF02086 MethyltransfD12: D12 83.6 1.4 3E-05 37.0 3.6 51 22-72 7-59 (260)
405 cd08276 MDR7 Medium chain dehy 83.5 22 0.00049 30.4 11.4 97 32-137 159-260 (336)
406 cd08297 CAD3 Cinnamyl alcohol 83.4 19 0.00042 31.1 11.0 99 31-137 163-266 (341)
407 COG0863 DNA modification methy 83.4 4.1 8.8E-05 34.8 6.6 59 15-73 203-262 (302)
408 PF02558 ApbA: Ketopantoate re 83.3 3.2 6.9E-05 31.5 5.4 99 37-140 1-105 (151)
409 KOG2671 Putative RNA methylase 83.2 0.83 1.8E-05 40.0 2.1 42 31-72 206-247 (421)
410 cd08292 ETR_like_2 2-enoyl thi 83.1 17 0.00036 31.1 10.4 98 31-137 137-239 (324)
411 PF08484 Methyltransf_14: C-me 82.8 9.2 0.0002 29.8 7.7 110 5-134 43-157 (160)
412 cd08274 MDR9 Medium chain dehy 82.5 19 0.00041 31.2 10.6 95 31-136 175-273 (350)
413 PF02005 TRM: N2,N2-dimethylgu 82.1 1.8 3.9E-05 38.8 4.0 94 33-137 49-155 (377)
414 PRK08177 short chain dehydroge 82.0 16 0.00035 29.6 9.4 74 36-109 3-81 (225)
415 cd05288 PGDH Prostaglandin deh 81.6 23 0.00049 30.4 10.7 96 32-136 144-244 (329)
416 cd08244 MDR_enoyl_red Possible 81.5 30 0.00065 29.5 11.4 97 32-137 141-242 (324)
417 TIGR00497 hsdM type I restrict 81.5 6.6 0.00014 36.6 7.6 112 20-136 200-355 (501)
418 PRK06522 2-dehydropantoate 2-r 81.3 13 0.00028 31.8 9.0 98 36-138 2-102 (304)
419 PRK11064 wecC UDP-N-acetyl-D-m 81.2 19 0.00042 32.6 10.4 111 35-148 4-131 (415)
420 PRK09260 3-hydroxybutyryl-CoA 81.2 8 0.00017 33.1 7.6 38 36-73 3-42 (288)
421 PF11899 DUF3419: Protein of u 81.0 4.7 0.0001 36.2 6.2 43 30-72 32-74 (380)
422 cd08246 crotonyl_coA_red croto 81.0 23 0.0005 31.5 10.8 99 31-137 191-316 (393)
423 PRK03659 glutathione-regulated 80.5 15 0.00034 35.1 9.9 92 35-134 401-496 (601)
424 COG1565 Uncharacterized conser 80.2 7.4 0.00016 34.5 6.9 40 33-72 77-126 (370)
425 PRK06035 3-hydroxyacyl-CoA deh 80.1 9.3 0.0002 32.7 7.6 38 35-72 4-43 (291)
426 PRK08293 3-hydroxybutyryl-CoA 80.1 11 0.00024 32.2 8.1 38 35-72 4-43 (287)
427 KOG3924 Putative protein methy 79.8 4.4 9.6E-05 36.2 5.4 119 10-134 163-306 (419)
428 PF05206 TRM13: Methyltransfer 79.7 4.8 0.00011 34.1 5.5 45 22-66 5-58 (259)
429 PRK05786 fabG 3-ketoacyl-(acyl 79.6 22 0.00049 28.8 9.6 103 34-137 5-136 (238)
430 PRK07502 cyclohexadienyl dehyd 79.5 12 0.00026 32.3 8.2 88 35-134 7-98 (307)
431 PLN02702 L-idonate 5-dehydroge 79.3 32 0.0007 30.2 11.1 98 32-136 180-285 (364)
432 cd05282 ETR_like 2-enoyl thioe 79.1 23 0.0005 30.2 9.9 97 32-137 137-238 (323)
433 PLN02494 adenosylhomocysteinas 79.1 11 0.00024 34.8 8.0 104 21-141 238-346 (477)
434 cd08284 FDH_like_2 Glutathione 79.0 34 0.00073 29.6 11.0 99 32-138 166-268 (344)
435 PRK15057 UDP-glucose 6-dehydro 78.8 28 0.0006 31.4 10.4 37 37-73 3-40 (388)
436 COG1893 ApbA Ketopantoate redu 78.5 31 0.00066 30.0 10.3 111 36-152 2-116 (307)
437 KOG0023 Alcohol dehydrogenase, 78.5 18 0.00039 31.7 8.5 97 32-138 180-281 (360)
438 PRK08265 short chain dehydroge 78.0 18 0.00039 30.1 8.7 76 34-109 6-90 (261)
439 PRK10669 putative cation:proto 77.8 7.4 0.00016 36.8 6.8 92 35-134 418-513 (558)
440 PRK08306 dipicolinate synthase 77.8 16 0.00035 31.5 8.4 91 33-138 151-243 (296)
441 COG4017 Uncharacterized protei 77.8 7.7 0.00017 31.3 5.7 73 32-116 43-116 (254)
442 PRK03562 glutathione-regulated 77.7 28 0.00061 33.4 10.7 93 34-134 400-496 (621)
443 COG1867 TRM1 N2,N2-dimethylgua 77.7 7.2 0.00016 34.6 6.1 92 34-136 53-154 (380)
444 PF05050 Methyltransf_21: Meth 77.4 4.1 8.9E-05 31.1 4.2 36 39-74 1-42 (167)
445 PRK09496 trkA potassium transp 77.3 22 0.00048 32.3 9.7 90 33-129 230-324 (453)
446 cd08250 Mgc45594_like Mgc45594 77.3 45 0.00098 28.5 11.4 97 31-136 137-237 (329)
447 cd05289 MDR_like_2 alcohol deh 77.2 42 0.00091 28.1 11.2 95 31-137 142-239 (309)
448 TIGR02824 quinone_pig3 putativ 77.2 43 0.00094 28.2 11.2 98 31-137 137-239 (325)
449 cd08256 Zn_ADH2 Alcohol dehydr 77.1 42 0.00092 29.2 11.1 97 32-136 173-274 (350)
450 PRK07530 3-hydroxybutyryl-CoA 77.0 16 0.00035 31.2 8.2 38 35-72 5-44 (292)
451 PRK07066 3-hydroxybutyryl-CoA 76.8 22 0.00048 31.1 9.0 94 35-133 8-116 (321)
452 PRK12921 2-dehydropantoate 2-r 76.3 18 0.0004 30.9 8.4 96 36-136 2-102 (305)
453 TIGR00872 gnd_rel 6-phosphoglu 76.1 25 0.00054 30.3 9.1 86 37-133 3-90 (298)
454 TIGR02823 oxido_YhdH putative 76.1 42 0.00091 28.6 10.7 96 31-137 142-242 (323)
455 PRK08267 short chain dehydroge 75.9 35 0.00076 28.2 9.9 75 35-109 2-87 (260)
456 PRK13771 putative alcohol dehy 75.5 21 0.00047 30.7 8.7 93 32-137 161-256 (334)
457 cd08270 MDR4 Medium chain dehy 75.0 45 0.00098 28.1 10.5 89 33-137 132-223 (305)
458 PRK07576 short chain dehydroge 75.0 26 0.00057 29.2 8.9 76 33-108 8-95 (264)
459 PRK05808 3-hydroxybutyryl-CoA 74.6 15 0.00033 31.2 7.4 85 36-132 5-114 (282)
460 TIGR02817 adh_fam_1 zinc-bindi 74.4 55 0.0012 28.1 11.0 93 34-135 149-246 (336)
461 PF12692 Methyltransf_17: S-ad 74.3 10 0.00022 29.2 5.3 108 22-134 16-132 (160)
462 PRK06249 2-dehydropantoate 2-r 74.0 23 0.0005 30.7 8.4 99 34-138 5-108 (313)
463 cd08262 Zn_ADH8 Alcohol dehydr 73.9 53 0.0012 28.3 10.8 100 31-137 159-265 (341)
464 PF02153 PDH: Prephenate dehyd 73.9 11 0.00023 31.8 6.2 91 48-151 2-94 (258)
465 PF01555 N6_N4_Mtase: DNA meth 73.8 4.5 9.7E-05 32.7 3.8 24 114-138 35-58 (231)
466 PRK08324 short chain dehydroge 73.8 19 0.00042 34.9 8.6 103 33-136 421-557 (681)
467 cd05276 p53_inducible_oxidored 73.8 53 0.0011 27.6 11.0 99 31-137 137-239 (323)
468 PF10354 DUF2431: Domain of un 73.6 22 0.00047 27.9 7.4 95 39-139 2-128 (166)
469 KOG0821 Predicted ribosomal RN 73.2 9.2 0.0002 31.6 5.2 49 23-71 38-89 (326)
470 TIGR02437 FadB fatty oxidation 72.6 19 0.00041 35.3 8.2 94 35-134 314-426 (714)
471 TIGR01751 crot-CoA-red crotony 72.5 59 0.0013 29.1 11.0 98 32-137 188-311 (398)
472 PRK06130 3-hydroxybutyryl-CoA 72.1 24 0.00052 30.4 8.1 39 35-73 5-45 (311)
473 cd08299 alcohol_DH_class_I_II_ 72.1 59 0.0013 28.8 10.8 98 32-137 189-293 (373)
474 cd08249 enoyl_reductase_like e 72.0 41 0.00089 29.2 9.7 97 32-137 153-255 (339)
475 COG1748 LYS9 Saccharopine dehy 71.8 16 0.00035 32.8 7.0 69 35-106 2-75 (389)
476 PTZ00075 Adenosylhomocysteinas 71.6 14 0.0003 34.2 6.6 89 33-139 253-344 (476)
477 cd01842 SGNH_hydrolase_like_5 71.2 9.1 0.0002 30.4 4.6 44 95-140 46-102 (183)
478 cd08251 polyketide_synthase po 71.2 59 0.0013 27.1 10.3 97 32-136 119-219 (303)
479 COG2910 Putative NADH-flavin r 71.1 12 0.00025 30.2 5.2 79 42-126 7-93 (211)
480 smart00829 PKS_ER Enoylreducta 70.8 58 0.0013 26.8 10.7 98 32-137 103-206 (288)
481 PRK11730 fadB multifunctional 70.7 21 0.00045 35.0 8.0 87 35-134 314-426 (715)
482 COG5379 BtaA S-adenosylmethion 70.7 9.7 0.00021 32.8 5.0 41 32-72 62-102 (414)
483 cd08252 AL_MDR Arginate lyase 70.4 69 0.0015 27.4 10.9 94 34-136 150-248 (336)
484 PF10237 N6-adenineMlase: Prob 70.3 50 0.0011 25.8 9.5 106 23-136 15-123 (162)
485 KOG1209 1-Acyl dihydroxyaceton 70.0 42 0.0009 27.8 8.2 74 33-106 6-88 (289)
486 TIGR02441 fa_ox_alpha_mit fatt 70.0 17 0.00036 35.8 7.2 94 35-134 336-448 (737)
487 cd08267 MDR1 Medium chain dehy 69.9 63 0.0014 27.2 10.3 98 31-138 141-242 (319)
488 PF11312 DUF3115: Protein of u 69.0 15 0.00033 31.9 5.9 100 35-136 88-242 (315)
489 PF03446 NAD_binding_2: NAD bi 68.7 9.7 0.00021 29.5 4.5 100 37-150 4-108 (163)
490 cd08290 ETR 2-enoyl thioester 67.3 74 0.0016 27.4 10.3 96 32-136 145-251 (341)
491 PRK09496 trkA potassium transp 67.2 29 0.00062 31.6 7.9 92 36-134 2-97 (453)
492 cd08264 Zn_ADH_like2 Alcohol d 66.7 56 0.0012 27.9 9.3 91 31-137 160-254 (325)
493 TIGR00027 mthyl_TIGR00027 meth 66.6 51 0.0011 27.8 8.7 100 34-134 82-195 (260)
494 PF01262 AlaDh_PNT_C: Alanine 66.1 10 0.00022 29.6 4.1 42 33-74 19-62 (168)
495 cd08258 Zn_ADH4 Alcohol dehydr 66.1 84 0.0018 26.8 10.6 98 32-137 163-265 (306)
496 PF02737 3HCDH_N: 3-hydroxyacy 65.9 13 0.00028 29.5 4.7 86 37-134 2-112 (180)
497 PRK09599 6-phosphogluconate de 65.7 63 0.0014 27.8 9.3 90 37-136 3-94 (301)
498 PRK06182 short chain dehydroge 65.4 80 0.0017 26.3 10.5 75 34-110 3-85 (273)
499 PRK08655 prephenate dehydrogen 64.9 27 0.00058 32.0 7.1 84 36-133 2-89 (437)
500 PF03721 UDPG_MGDP_dh_N: UDP-g 64.8 16 0.00036 29.1 5.1 109 37-154 3-139 (185)
No 1
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=100.00 E-value=3e-45 Score=293.64 Aligned_cols=258 Identities=42% Similarity=0.688 Sum_probs=223.6
Q ss_pred ChhhhHHHHHHHHhhCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEE
Q 037961 1 MAELFIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQ 80 (262)
Q Consensus 1 ~~~~F~~~a~~Y~~~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~ 80 (262)
|+.+|+.+|+.|...||+||..++..+.......+.++|+|||+|+.++.++.++.+|+|+|+|+.||+.|++.+++++.
T Consensus 1 ~~~~~~~~a~~Y~~ARP~YPtdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~ 80 (261)
T KOG3010|consen 1 MAKLFDKQAADYLNARPSYPTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYC 80 (261)
T ss_pred CcccccccHHHHhhcCCCCcHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccc
Confidence 78899999999999999999999999998887666999999999999999999999999999999999999998888887
Q ss_pred eCC-CCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCC-CcccHHHHHhhcccccCCC
Q 037961 81 LTP-TMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM-PEINESVGAVFKPFDTIDC 158 (262)
Q Consensus 81 ~~~-~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~-~~~~~~~~~~~~~~~~~~~ 158 (262)
... ..+-++...+.-.++|+|+|+|++|+||||.+.+++++.|+||++||++++|+|++ ....+++..++.+++. ..
T Consensus 81 ~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFdle~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE~dsv~~r~~~-~~ 159 (261)
T KOG3010|consen 81 HTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFDLERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPEFDSVMLRLYD-ST 159 (261)
T ss_pred cCCccccccccccccCCCcceeeehhhhhHHhhchHHHHHHHHHHcCCCCCEEEEEEccCCCcCCHHHHHHHHHHhh-cc
Confidence 766 44333444443348999999999999999999999999999997888999999994 4447899999999887 57
Q ss_pred CCCcc-ccchhHHhcCCCCCCCCCCCCCCCCCCCCcceeEeEeecHHHHHHHHhhhhHHHHHHHhCCccchHHHHHHHHH
Q 037961 159 NPFWA-PQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKA 237 (262)
Q Consensus 159 ~~~~~-~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~~~~~~~~~~~~l~~~~~~~l~~ 237 (262)
+|+|. +.+.++-.+|+.+.|||+.+.-.....+. .+.+..+++++++.+|++|||.|..+++++.+.+.+.+..++++
T Consensus 160 ~p~~r~~~~n~~fdgy~~~~F~~e~v~~~s~~~~~-~l~~~~~lsl~~F~~~~rsws~~~~akek~~e~i~~~~I~e~~~ 238 (261)
T KOG3010|consen 160 LPYWRSPLRNLLFDGYKTIEFPFESVGMGSQGKPK-TLEIPHTLSLEGFSGFLRSWSAYKEAKEKGLELIADIFIPEFEE 238 (261)
T ss_pred CchhhhHHHHhhccccccccccccccCCCCCCCce-eehhhHHHHHHHHHHHHhCcHHHHHHHhcChHHHHHHHHHHHHh
Confidence 78754 66777889999999999887533222233 78889999999999999999999999999999999989999999
Q ss_pred HhccCCCCeEEEEEeEEEEEEEeC
Q 037961 238 AWNEDGQSQKIARFRVYLRIGKVG 261 (262)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~rk~ 261 (262)
.|+... ....+.|.+++++||++
T Consensus 239 ~~~~~~-~~~~V~y~tf~~~gk~~ 261 (261)
T KOG3010|consen 239 AWGEDN-LVKTVVYSTFMLLGKVR 261 (261)
T ss_pred hccccc-ceeEEEeeeeeeecccC
Confidence 999874 47799999999999975
No 2
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.93 E-value=3.4e-24 Score=180.75 Aligned_cols=236 Identities=17% Similarity=0.236 Sum_probs=155.0
Q ss_pred hhhhHHHHHHHHhhCCCChHHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-CCce
Q 037961 2 AELFIKQANLYAVARPNYPKELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-PNIR 78 (262)
Q Consensus 2 ~~~F~~~a~~Y~~~rp~yp~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~ 78 (262)
++.|+++|..|+++.. .-....+.+.+.++ +..+|||+|||+|.++..++..+.+|+++|+|+.|++.+++. ....
T Consensus 10 ~~~F~~aa~~Y~~~~~-~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~ 88 (251)
T PRK10258 10 AAAFGRAAAHYEQHAE-LQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADH 88 (251)
T ss_pred HHHHHHHHHhHhHHHH-HHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCC
Confidence 5789999999998643 22444555666554 457899999999999999998899999999999999999865 3455
Q ss_pred EEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcccccCC
Q 037961 79 YQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTID 157 (262)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~ 157 (262)
++.+ |++.+++++++||+|+++.++||+ |+..++.++.++|+ |||.+++.......+ .++...+.......
T Consensus 89 ~~~~------d~~~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk-~gG~l~~~~~~~~~~-~el~~~~~~~~~~~ 160 (251)
T PRK10258 89 YLAG------DIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVR-PGGVVAFTTLVQGSL-PELHQAWQAVDERP 160 (251)
T ss_pred EEEc------CcccCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcC-CCeEEEEEeCCCCch-HHHHHHHHHhccCC
Confidence 6654 467777888899999999999999 99999999999999 999999977665543 44555554432211
Q ss_pred -CCCCccccchhHHhcCCCCCCCCCCCCCCCCCCCCcceeEeEeecHHHHHHHHhhhhHHHHHHHhCCccchHHHHHHHH
Q 037961 158 -CNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFK 236 (262)
Q Consensus 158 -~~~~~~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~~~~~~~~~~~~l~~~~~~~l~ 236 (262)
..++.+ ...+...+...+ +. .+. .......-+..+++..++............+..+....++++.
T Consensus 161 ~~~~~~~--~~~l~~~l~~~~--~~-~~~--------~~~~~~f~~~~~~l~~lk~~G~~~~~~~~~~~~~~~~~~~~~~ 227 (251)
T PRK10258 161 HANRFLP--PDAIEQALNGWR--YQ-HHI--------QPITLWFDDALSAMRSLKGIGATHLHEGRDPRILTRSQLQRLQ 227 (251)
T ss_pred ccccCCC--HHHHHHHHHhCC--ce-eee--------eEEEEECCCHHHHHHHHHHhCCCCCCCCCCCCCCcHHHHHHHH
Confidence 112222 112223322222 11 000 1111122244455555554433222111234455555566677
Q ss_pred HHhccCCCCeEEEEEeEEEEEEEe
Q 037961 237 AAWNEDGQSQKIARFRVYLRIGKV 260 (262)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~rk 260 (262)
+.|...+ +.++++|.+++..++|
T Consensus 228 ~~~~~~~-g~~~lty~v~~~~~~~ 250 (251)
T PRK10258 228 LAWPQQQ-GRYPLTYHLFLGVIER 250 (251)
T ss_pred HhccccC-CCcceEEEEEEEEEEc
Confidence 7776533 3689999999988876
No 3
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.89 E-value=1.6e-22 Score=166.55 Aligned_cols=144 Identities=23% Similarity=0.303 Sum_probs=111.9
Q ss_pred hhhhHHHHHHHHhhCC----CChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhc
Q 037961 2 AELFIKQANLYAVARP----NYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIK 73 (262)
Q Consensus 2 ~~~F~~~a~~Y~~~rp----~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~ 73 (262)
..-|++.|..|+..-. .--...-+.+.... +++..|||||||||..+..+++.. .+|+|+|+|+.||+.|++
T Consensus 14 ~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~ 93 (238)
T COG2226 14 QKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVARE 93 (238)
T ss_pred HHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHH
Confidence 4679999999988531 11122222333332 278999999999999999999975 799999999999999986
Q ss_pred C------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHH
Q 037961 74 L------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESV 146 (262)
Q Consensus 74 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~ 146 (262)
. .+++++++ |++++|+++++||+|+++++++++ |.+++|+|++|||| |||.+++.....+. ...+
T Consensus 94 k~~~~~~~~i~fv~~------dAe~LPf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlK-pgG~~~vle~~~p~-~~~~ 165 (238)
T COG2226 94 KLKKKGVQNVEFVVG------DAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLK-PGGRLLVLEFSKPD-NPVL 165 (238)
T ss_pred HhhccCccceEEEEe------chhhCCCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhc-CCeEEEEEEcCCCC-chhh
Confidence 3 23778875 599999999999999999999999 99999999999999 99999986666543 2333
Q ss_pred HHhhccc
Q 037961 147 GAVFKPF 153 (262)
Q Consensus 147 ~~~~~~~ 153 (262)
...+..+
T Consensus 166 ~~~~~~~ 172 (238)
T COG2226 166 RKAYILY 172 (238)
T ss_pred HHHHHHH
Confidence 4444333
No 4
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.88 E-value=2.1e-21 Score=164.12 Aligned_cols=211 Identities=14% Similarity=0.126 Sum_probs=135.9
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL 109 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~ 109 (262)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++. ++++..++ +++++ ++++||+|+++.++
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-~~~~~~~d------~~~~~-~~~~fD~v~~~~~l 99 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-GVDARTGD------VRDWK-PKPDTDVVVSNAAL 99 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-CCcEEEcC------hhhCC-CCCCceEEEEehhh
Confidence 46688999999999999999987 67999999999999999864 67777764 55553 56789999999999
Q ss_pred ccC-ChhHHHHHHHHhhcCCCeEEEEEecCCC--cccHHHHHhh-----cccccCC-CC-CCccccchhHHhcCCCCCCC
Q 037961 110 HWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMP--EINESVGAVF-----KPFDTID-CN-PFWAPQRKLVDKKYMSIDFP 179 (262)
Q Consensus 110 ~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~--~~~~~~~~~~-----~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~ 179 (262)
||+ |+.+++++++++|| |||.+++...... ........+. ....... .. +........+.+.+++.+|
T Consensus 100 ~~~~d~~~~l~~~~~~Lk-pgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf- 177 (255)
T PRK14103 100 QWVPEHADLLVRWVDELA-PGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGC- 177 (255)
T ss_pred hhCCCHHHHHHHHHHhCC-CCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCC-
Confidence 999 99999999999999 9999998433211 1111111111 1111000 00 0000112234566666663
Q ss_pred CCCCCCCCCCCCCcceeEeEee-cHHHHHHHHhhhh---HHHHHHHhCCccchHHHHHHHHHHhccCCCCeEEEEEeEEE
Q 037961 180 FEPVDGYENTGPFDQFVVEKMM-DLDDYFKFIRSCS---AYQKAKDKGVELLTENVMEKFKAAWNEDGQSQKIARFRVYL 255 (262)
Q Consensus 180 f~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~l~s~s---~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 255 (262)
..... ........ ..+.+.+++...+ ....+.++..+.+.+++.+.+.+.+...+.+.+...|....
T Consensus 178 -~v~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~ 248 (255)
T PRK14103 178 -KVDAW--------ETTYVHQLTGEDPVLDWITGTALRPVRERLSDDSWEQFRAELIPLLREAYPPRADGTTFFPFRRVF 248 (255)
T ss_pred -eEEEE--------eeeeeeeCCCchhhhhhhhccchhhhhhhCCHHHHHHHHHHHHHHHHHHCCCCCCCcEEeeeccEE
Confidence 21110 00111122 3455777776433 33344455566777778888887764322236789999999
Q ss_pred EEEEeC
Q 037961 256 RIGKVG 261 (262)
Q Consensus 256 ~~~rk~ 261 (262)
+.|+|+
T Consensus 249 ~~a~~~ 254 (255)
T PRK14103 249 VVARVG 254 (255)
T ss_pred EEEEeC
Confidence 999997
No 5
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.87 E-value=5.8e-22 Score=164.48 Aligned_cols=143 Identities=24% Similarity=0.302 Sum_probs=84.7
Q ss_pred hhhhHHHHHHHHhhCC----CChHHHHHHHHhh--CCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHh
Q 037961 2 AELFIKQANLYAVARP----NYPKELFKLIASK--TPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAI 72 (262)
Q Consensus 2 ~~~F~~~a~~Y~~~rp----~yp~~~~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~ 72 (262)
.+.|++.|..|+..-- ......-+.+.+. ..++.+|||+|||||.++..+++. ..+|+|+|+|+.|++.|+
T Consensus 10 ~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~ 89 (233)
T PF01209_consen 10 RKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVAR 89 (233)
T ss_dssp ---------------------------SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHH
Confidence 3679999999987511 1111111222222 246789999999999999999886 358999999999999998
Q ss_pred cC------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHH
Q 037961 73 KL------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINES 145 (262)
Q Consensus 73 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~ 145 (262)
+. .+++++++ |++++|+++++||+|++++++|.+ |+.++++|++|+|| |||++++..++.+. .+.
T Consensus 90 ~k~~~~~~~~i~~v~~------da~~lp~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLk-PGG~l~ile~~~p~-~~~ 161 (233)
T PF01209_consen 90 KKLKREGLQNIEFVQG------DAEDLPFPDNSFDAVTCSFGLRNFPDRERALREMYRVLK-PGGRLVILEFSKPR-NPL 161 (233)
T ss_dssp HHHHHTT--SEEEEE-------BTTB--S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEE-EEEEEEEEEEEB-S-SHH
T ss_pred HHHHhhCCCCeeEEEc------CHHHhcCCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcC-CCeEEEEeeccCCC-Cch
Confidence 52 47888875 588999999999999999999999 99999999999999 99999996665543 244
Q ss_pred HHHhhcc
Q 037961 146 VGAVFKP 152 (262)
Q Consensus 146 ~~~~~~~ 152 (262)
+..++.-
T Consensus 162 ~~~~~~~ 168 (233)
T PF01209_consen 162 LRALYKF 168 (233)
T ss_dssp HHHHHHH
T ss_pred hhceeee
Confidence 4444443
No 6
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.86 E-value=3.2e-20 Score=157.18 Aligned_cols=235 Identities=12% Similarity=0.144 Sum_probs=143.2
Q ss_pred HHHHHHhhCCCChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-CCceEEeC
Q 037961 8 QANLYAVARPNYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-PNIRYQLT 82 (262)
Q Consensus 8 ~a~~Y~~~rp~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-~~~~~~~~ 82 (262)
.|+.|+++.+... .....++... .++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.+++. +++.+..+
T Consensus 5 ~~~~Y~~~~~~~~-~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~ 83 (258)
T PRK01683 5 NPSLYLKFEDERT-RPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEA 83 (258)
T ss_pred CHHHHHHHHHHhh-cHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEEC
Confidence 4667776544321 1233333333 46789999999999999999886 57999999999999999864 67788776
Q ss_pred CCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCC-ccc-HHHHHhh-----cccc
Q 037961 83 PTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMP-EIN-ESVGAVF-----KPFD 154 (262)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~-~~~-~~~~~~~-----~~~~ 154 (262)
+ +..+. ++++||+|+++.++||+ |+..+++++.++|| |||.+++...... ... ..+.++. ...+
T Consensus 84 d------~~~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lk-pgG~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~ 155 (258)
T PRK01683 84 D------IASWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLA-PGGVLAVQMPDNLDEPSHVLMREVAENGPWEQNL 155 (258)
T ss_pred c------hhccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcC-CCcEEEEECCCCCCCHHHHHHHHHHccCchHHHh
Confidence 5 44443 45689999999999999 99999999999999 9999988432211 111 1111111 1111
Q ss_pred cCCC-CCCccccchhHHhcCCCCCCCCCCCCCCCCCCCCcceeEe-EeecHHHHHHHHhhhh---HHHHHHHhCCccchH
Q 037961 155 TIDC-NPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVE-KMMDLDDYFKFIRSCS---AYQKAKDKGVELLTE 229 (262)
Q Consensus 155 ~~~~-~~~~~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~l~s~s---~~~~~~~~~~~~l~~ 229 (262)
.... .+...+......+.+...++ ...+. ..... ..-+.+++++++++.+ ....+.++.++.+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~g~-~v~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~f~~ 225 (258)
T PRK01683 156 PDRGARRAPLPPPHAYYDALAPAAC-RVDIW---------HTTYYHPMPSAQAIVEWVKGTGLRPFLDPLTESEQAAFLA 225 (258)
T ss_pred ccccccCcCCCCHHHHHHHHHhCCC-ceeee---------eeeeeeecCCchhhhhhhhhccHHHHHhhCCHHHHHHHHH
Confidence 1000 01111111112233333331 11111 11111 2225677888877542 223344455667777
Q ss_pred HHHHHHHHHhccCCCCeEEEEEeEEEEEEEeC
Q 037961 230 NVMEKFKAAWNEDGQSQKIARFRVYLRIGKVG 261 (262)
Q Consensus 230 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rk~ 261 (262)
++.+.+.+.+.....+.+.++|.-..++|+|.
T Consensus 226 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 257 (258)
T PRK01683 226 AYLARIAEAYPLQADGKVLLAFPRLFIVARRK 257 (258)
T ss_pred HHHHHHHHHCCCCCCCcEEcccceEEEEEEec
Confidence 78877877765322236899998888999884
No 7
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.84 E-value=6.3e-20 Score=155.35 Aligned_cols=130 Identities=21% Similarity=0.215 Sum_probs=102.5
Q ss_pred hhhHHHHHHHHhhCCCC--h-HHHHH-HHHhh--CCCCCeEEEEcCcccHhHHHHHhh-C--CeEEEEcCCHHHHHHHhc
Q 037961 3 ELFIKQANLYAVARPNY--P-KELFK-LIASK--TPKRNLAWDVGTRSGQAAASLAQI-Y--QHVIATDTSPKQLKFAIK 73 (262)
Q Consensus 3 ~~F~~~a~~Y~~~rp~y--p-~~~~~-~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~ 73 (262)
..|++.|..|+...... . ..... .+... .+++.+|||+|||+|..+..+++. + .+|+|+|+|++|++.|++
T Consensus 37 ~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~ 116 (261)
T PLN02233 37 ALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAAS 116 (261)
T ss_pred HHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHH
Confidence 57999999999753211 1 22222 22222 356789999999999999999876 3 489999999999999874
Q ss_pred C---------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961 74 L---------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 74 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
. .++.++++ |++++|+++++||+|+++.++|++ |+.++++++.|+|| |||.|++..+..
T Consensus 117 r~~~~~~~~~~~i~~~~~------d~~~lp~~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLk-pGG~l~i~d~~~ 185 (261)
T PLN02233 117 RQELKAKSCYKNIEWIEG------DATDLPFDDCYFDAITMGYGLRNVVDRLKAMQEMYRVLK-PGSRVSILDFNK 185 (261)
T ss_pred HhhhhhhccCCCeEEEEc------ccccCCCCCCCEeEEEEecccccCCCHHHHHHHHHHHcC-cCcEEEEEECCC
Confidence 3 25667665 477788899999999999999999 99999999999999 999999866554
No 8
>PRK05785 hypothetical protein; Provisional
Probab=99.83 E-value=1.7e-19 Score=149.45 Aligned_cols=119 Identities=20% Similarity=0.206 Sum_probs=97.4
Q ss_pred hhhhHHHHHHHHhhCCC--------ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHh
Q 037961 2 AELFIKQANLYAVARPN--------YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAI 72 (262)
Q Consensus 2 ~~~F~~~a~~Y~~~rp~--------yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~ 72 (262)
.+.|++.|..|+..... ....+.+.+....+++.+|||+|||||..+..+++. +.+|+|+|+|++|++.|+
T Consensus 12 ~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~ 91 (226)
T PRK05785 12 QEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNL 91 (226)
T ss_pred HHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHH
Confidence 46799999999986421 113345555555556789999999999999999988 589999999999999998
Q ss_pred cCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCC
Q 037961 73 KLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPS 129 (262)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pg 129 (262)
+.. .+++ ++++++|+++++||+|++++++||+ |++++++++.|+|| |.
T Consensus 92 ~~~--~~~~------~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLk-p~ 140 (226)
T PRK05785 92 VAD--DKVV------GSFEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSR-KQ 140 (226)
T ss_pred hcc--ceEE------echhhCCCCCCCEEEEEecChhhccCCHHHHHHHHHHHhc-Cc
Confidence 642 3344 4578889999999999999999999 99999999999999 84
No 9
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.83 E-value=2.7e-19 Score=149.27 Aligned_cols=228 Identities=20% Similarity=0.241 Sum_probs=141.9
Q ss_pred hhHHHHHHHHhhCCCChHHHHHHHHhhC-----CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC--
Q 037961 4 LFIKQANLYAVARPNYPKELFKLIASKT-----PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-- 74 (262)
Q Consensus 4 ~F~~~a~~Y~~~rp~yp~~~~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-- 74 (262)
+|++++..|+++. .+-..+...+.... ....+|||+|||+|.++..+++.+ .+++++|+++.+++.+++.
T Consensus 1 ~~~~~~~~y~~~~-~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~ 79 (240)
T TIGR02072 1 SFNKAAKTYDRHA-KIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS 79 (240)
T ss_pred CcchhhhchhHHH-HHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC
Confidence 4788888888752 22233333333322 234689999999999999999875 4689999999999988764
Q ss_pred CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhccc
Q 037961 75 PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPF 153 (262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~~ 153 (262)
+++.++.++ +++.++++++||+|+++.++||+ |+..++.++.++|+ |||.+++.......+ ..+...+...
T Consensus 80 ~~~~~~~~d------~~~~~~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~-~~G~l~~~~~~~~~~-~~~~~~~~~~ 151 (240)
T TIGR02072 80 ENVQFICGD------AEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLK-PGGLLAFSTFGPGTL-HELRQSFGQH 151 (240)
T ss_pred CCCeEEecc------hhhCCCCCCceeEEEEhhhhhhccCHHHHHHHHHHHcC-CCcEEEEEeCCccCH-HHHHHHHHHh
Confidence 356777654 66666778899999999999999 99999999999999 999999865554433 3333333321
Q ss_pred ccCCCCCCccccchhHHhcCCCCCCCCCCCCCCCCCCCCccee-EeEeecHHHHHHHHhhhhHHHHHHH-hCCccchHHH
Q 037961 154 DTIDCNPFWAPQRKLVDKKYMSIDFPFEPVDGYENTGPFDQFV-VEKMMDLDDYFKFIRSCSAYQKAKD-KGVELLTENV 231 (262)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~l~s~s~~~~~~~-~~~~~l~~~~ 231 (262)
. .++.+. ..+.+.+... |..+... ... .....+..+++.+++.........+ ..++.+.+ +
T Consensus 152 ~----~~~~~~--~~~~~~l~~~---f~~~~~~-------~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~-~ 214 (240)
T TIGR02072 152 G----LRYLSL--DELKALLKNS---FELLTLE-------EELITLSFDDPLDVLRHLKKTGANGLSSGRTSRKQLKA-F 214 (240)
T ss_pred c----cCCCCH--HHHHHHHHHh---cCCcEEE-------EEEEEEeCCCHHHHHHHHHHhccCcCCCCCCCHHHHHH-H
Confidence 1 122221 1112222221 2211100 111 1122356777777777543222111 12222222 4
Q ss_pred HHHHHHHhccCCCCeEEEEEeEEEEEEEe
Q 037961 232 MEKFKAAWNEDGQSQKIARFRVYLRIGKV 260 (262)
Q Consensus 232 ~~~l~~~~~~~~~~~~~~~~~~~~~~~rk 260 (262)
.+.+.+.+.. + .+.++|.+.+++|+|
T Consensus 215 ~~~~~~~~~~-~--gi~~~~~~~~~~~~k 240 (240)
T TIGR02072 215 LERYEQEFQP-D--GLPLTYHVVYGIAKK 240 (240)
T ss_pred HHHHHHhhcC-C--CceeEEEEEEEEEEC
Confidence 4455554543 2 289999999999987
No 10
>PLN02244 tocopherol O-methyltransferase
Probab=99.82 E-value=3.9e-19 Score=155.96 Aligned_cols=99 Identities=23% Similarity=0.235 Sum_probs=85.8
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLV 103 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V 103 (262)
.++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.+++. .+++++++| +.++++++++||+|
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D------~~~~~~~~~~FD~V 190 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVAD------ALNQPFEDGQFDLV 190 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcC------cccCCCCCCCccEE
Confidence 35678999999999999999986 78999999999999988752 357777654 66677889999999
Q ss_pred EEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 104 TIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 104 ~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
++..++||+ |+.++++++.|+|| |||.|++..+
T Consensus 191 ~s~~~~~h~~d~~~~l~e~~rvLk-pGG~lvi~~~ 224 (340)
T PLN02244 191 WSMESGEHMPDKRKFVQELARVAA-PGGRIIIVTW 224 (340)
T ss_pred EECCchhccCCHHHHHHHHHHHcC-CCcEEEEEEe
Confidence 999999988 99999999999999 9999998443
No 11
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.82 E-value=5.6e-20 Score=131.23 Aligned_cols=90 Identities=29% Similarity=0.358 Sum_probs=77.6
Q ss_pred EEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC---CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-
Q 037961 38 WDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL---PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF- 112 (262)
Q Consensus 38 lDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~- 112 (262)
||+|||+|..+..++++ +.+|+++|+++.|++.+++. .++.+..+ +++++++++++||+|++..++||+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~------d~~~l~~~~~sfD~v~~~~~~~~~~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQG------DAEDLPFPDNSFDVVFSNSVLHHLE 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEES------BTTSSSS-TT-EEEEEEESHGGGSS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheee------hHHhCccccccccccccccceeecc
Confidence 89999999999999999 89999999999999999863 34556654 578889999999999999999999
Q ss_pred ChhHHHHHHHHhhcCCCeEEEE
Q 037961 113 DLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 113 d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
++.++++++.|+|| |||++++
T Consensus 75 ~~~~~l~e~~rvLk-~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLK-PGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEE-EEEEEEE
T ss_pred CHHHHHHHHHHHcC-cCeEEeC
Confidence 89999999999999 9999986
No 12
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.81 E-value=3.4e-19 Score=141.35 Aligned_cols=216 Identities=16% Similarity=0.259 Sum_probs=143.2
Q ss_pred HHHhhCC--CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc-CCCceEEeCCCCchhhhhhccCCCCce
Q 037961 26 LIASKTP--KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK-LPNIRYQLTPTMSITELEQNVATQSSV 100 (262)
Q Consensus 26 ~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (262)
.|+.+++ +...|.|+|||+|..|..|+++ ++.|+|+|-|++|++.|++ .++++|..+| +.+|. +..+.
T Consensus 21 dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aD------l~~w~-p~~~~ 93 (257)
T COG4106 21 DLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEAD------LRTWK-PEQPT 93 (257)
T ss_pred HHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceeccc------HhhcC-CCCcc
Confidence 3444544 5678999999999999999997 6799999999999998875 5899999865 66664 67789
Q ss_pred eeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC---CCcccHHHHHhhc-----ccccC-CC--CCCccccchh
Q 037961 101 DLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT---MPEINESVGAVFK-----PFDTI-DC--NPFWAPQRKL 168 (262)
Q Consensus 101 D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~---~~~~~~~~~~~~~-----~~~~~-~~--~~~~~~~~~~ 168 (262)
|+++++-++||+ |..+.+..+...|. |||+|++--.. .++ ...+++.-. .-..+ .. .+.-++ ..+
T Consensus 94 dllfaNAvlqWlpdH~~ll~rL~~~L~-Pgg~LAVQmPdN~deps-H~~mr~~A~~~p~~~~l~~~~~~r~~v~s~-a~Y 170 (257)
T COG4106 94 DLLFANAVLQWLPDHPELLPRLVSQLA-PGGVLAVQMPDNLDEPS-HRLMRETADEAPFAQELGGRGLTRAPLPSP-AAY 170 (257)
T ss_pred chhhhhhhhhhccccHHHHHHHHHhhC-CCceEEEECCCccCchh-HHHHHHHHhcCchhhhhCccccccCCCCCH-HHH
Confidence 999999999999 99999999999999 99999983222 111 122222221 11110 00 000000 111
Q ss_pred HHhcCCCCCCCCCCCCCCCCCCCCcceeEeEeecHHHHHHHHhhh---hHHHHHHHhCCccchHHHHHHHHHHhccCCCC
Q 037961 169 VDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSC---SAYQKAKDKGVELLTENVMEKFKAAWNEDGQS 245 (262)
Q Consensus 169 ~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~---s~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~ 245 (262)
.+.+.... ..|+ -++.......-..+.++++++.+ +....+.++.+..+.....+.|.+++.....+
T Consensus 171 -y~lLa~~~---~rvD------iW~T~Y~h~l~~a~aIvdWvkgTgLrP~L~~L~e~~~~~FL~~Y~~~l~~aYP~~~dG 240 (257)
T COG4106 171 -YELLAPLA---CRVD------IWHTTYYHQLPGADAIVDWVKGTGLRPYLDRLDEEERQRFLDRYLALLAEAYPPRADG 240 (257)
T ss_pred -HHHhCccc---ceee------eeeeeccccCCCccchhhheeccccceeccccCHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 12211110 1111 00011112223567788888875 33444566666777777888999998887555
Q ss_pred eEEEEEeEEEEEEEeC
Q 037961 246 QKIARFRVYLRIGKVG 261 (262)
Q Consensus 246 ~~~~~~~~~~~~~rk~ 261 (262)
.+-+.|+=.++.|+|+
T Consensus 241 r~ll~FpRlFiVA~~~ 256 (257)
T COG4106 241 RVLLAFPRLFIVATRG 256 (257)
T ss_pred cEEeecceEEEEEecC
Confidence 8899999999998875
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.79 E-value=1.1e-18 Score=147.46 Aligned_cols=130 Identities=22% Similarity=0.310 Sum_probs=101.8
Q ss_pred hhhhHHHHHHHHhhCCCChHHH---------HHHHHhhC-CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHH
Q 037961 2 AELFIKQANLYAVARPNYPKEL---------FKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFA 71 (262)
Q Consensus 2 ~~~F~~~a~~Y~~~rp~yp~~~---------~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a 71 (262)
.++|+..|+.|++.--.-+... ++.++..+ +++.+|||+|||+|..+..+++.+.+|+++|+|+.|++.|
T Consensus 3 ~~~fd~~a~~f~~~~y~~~~g~~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a 82 (255)
T PRK11036 3 DRNFDDIAEKFSRNIYGTTKGQIRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRA 82 (255)
T ss_pred CCChhhHHHHHHHhccCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence 4789999999988542222211 22333333 4567899999999999999999999999999999999998
Q ss_pred hcC-------CCceEEeCCCCchhhhhhc-cCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 72 IKL-------PNIRYQLTPTMSITELEQN-VATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 72 ~~~-------~~~~~~~~~~~~~~~~~~~-~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
++. .++++++++ +.++ +..+++||+|++..++||+ ++..+++++.++|| |||.|++..++
T Consensus 83 ~~~~~~~g~~~~v~~~~~d------~~~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~n 151 (255)
T PRK11036 83 KQAAEAKGVSDNMQFIHCA------AQDIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLR-PGGALSLMFYN 151 (255)
T ss_pred HHHHHhcCCccceEEEEcC------HHHHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcC-CCeEEEEEEEC
Confidence 753 356777765 3333 2456899999999999999 99999999999999 99999985544
No 14
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.76 E-value=3.2e-18 Score=134.15 Aligned_cols=116 Identities=22% Similarity=0.302 Sum_probs=92.9
Q ss_pred HHhhCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhh
Q 037961 12 YAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELE 91 (262)
Q Consensus 12 Y~~~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~ 91 (262)
|++.+.....+++..+....++..+|||+|||+|.++..+++.+.+++|+|+++.+++. ..+..... +..
T Consensus 1 y~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----~~~~~~~~------~~~ 70 (161)
T PF13489_consen 1 YARHRYRAYADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----RNVVFDNF------DAQ 70 (161)
T ss_dssp ---GCCHCHHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----TTSEEEEE------ECH
T ss_pred CchhHHHHHHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----hhhhhhhh------hhh
Confidence 66777766777778777767788999999999999999999999999999999999988 22222221 122
Q ss_pred hccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 92 QNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 92 ~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
....++++||+|+|+.++||+ |+..+++++.++|| |||.+++....
T Consensus 71 ~~~~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~Lk-pgG~l~~~~~~ 117 (161)
T PF13489_consen 71 DPPFPDGSFDLIICNDVLEHLPDPEEFLKELSRLLK-PGGYLVISDPN 117 (161)
T ss_dssp THHCHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEE-EEEEEEEEEEB
T ss_pred hhhccccchhhHhhHHHHhhcccHHHHHHHHHHhcC-CCCEEEEEEcC
Confidence 333467899999999999999 99999999999999 99999985544
No 15
>PRK08317 hypothetical protein; Provisional
Probab=99.76 E-value=1.5e-16 Score=132.67 Aligned_cols=109 Identities=21% Similarity=0.243 Sum_probs=88.4
Q ss_pred HHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhh
Q 037961 22 ELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELE 91 (262)
Q Consensus 22 ~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~ 91 (262)
...+.+.... .++.+|||+|||+|.++..+++.. .+++|+|+|+.+++.+++. .++.+..++ ++
T Consensus 6 ~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d------~~ 79 (241)
T PRK08317 6 RYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGD------AD 79 (241)
T ss_pred HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecc------cc
Confidence 3344444433 467899999999999999998863 5899999999999988764 456666654 55
Q ss_pred hccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 92 QNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 92 ~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
..++++++||+|++..+++++ |+..+++++.++|+ |||.+++...
T Consensus 80 ~~~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~ 125 (241)
T PRK08317 80 GLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLR-PGGRVVVLDT 125 (241)
T ss_pred cCCCCCCCceEEEEechhhccCCHHHHHHHHHHHhc-CCcEEEEEec
Confidence 556678899999999999999 99999999999999 9999998543
No 16
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.76 E-value=8.6e-18 Score=145.49 Aligned_cols=99 Identities=21% Similarity=0.226 Sum_probs=86.5
Q ss_pred CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTI 105 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~ 105 (262)
++.+|||||||+|.++..+++.+.+|+|+|+++.|++.|++. .++++..+ ++++++.++++||+|++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~------dae~l~~~~~~FD~Vi~ 204 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCT------TAEKLADEGRKFDAVLS 204 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEec------CHHHhhhccCCCCEEEE
Confidence 456899999999999999999999999999999999999853 25666664 46777777889999999
Q ss_pred ccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 106 ASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 106 ~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
..++||+ |+..+++++.++|| |||.+++....
T Consensus 205 ~~vLeHv~d~~~~L~~l~r~Lk-PGG~liist~n 237 (322)
T PLN02396 205 LEVIEHVANPAEFCKSLSALTI-PNGATVLSTIN 237 (322)
T ss_pred hhHHHhcCCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence 9999999 99999999999999 99999996554
No 17
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.76 E-value=3.4e-18 Score=138.79 Aligned_cols=105 Identities=21% Similarity=0.197 Sum_probs=86.1
Q ss_pred CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF 112 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~ 112 (262)
++.+|||+|||-|.++..+|+.|++|+|+|+++.+++.|+.+.....+..+ +....++++....++||+|+|..+++|+
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~-y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNID-YRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccccc-chhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 678999999999999999999999999999999999999965322222211 1123455554445899999999999999
Q ss_pred -ChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961 113 -DLPQFYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 113 -d~~~~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
|++.+++.|.+++| |||.+++.+.+.
T Consensus 138 ~dp~~~~~~c~~lvk-P~G~lf~STinr 164 (243)
T COG2227 138 PDPESFLRACAKLVK-PGGILFLSTINR 164 (243)
T ss_pred CCHHHHHHHHHHHcC-CCcEEEEecccc
Confidence 99999999999999 999999977653
No 18
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.75 E-value=1.9e-17 Score=137.82 Aligned_cols=132 Identities=23% Similarity=0.204 Sum_probs=102.9
Q ss_pred hhhhHHHHHHHHhhCCCC----hHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHh
Q 037961 2 AELFIKQANLYAVARPNY----PKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAI 72 (262)
Q Consensus 2 ~~~F~~~a~~Y~~~rp~y----p~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~ 72 (262)
.+.|++.+..|+...... .....+.++... +++.+|||+|||+|..+..+++. ..+|+|+|+|+.|++.++
T Consensus 8 ~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~ 87 (231)
T TIGR02752 8 HKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGR 87 (231)
T ss_pred HHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHH
Confidence 578999999999853311 122233344444 36789999999999999999875 358999999999999887
Q ss_pred cC------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCC
Q 037961 73 KL------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMP 140 (262)
Q Consensus 73 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~ 140 (262)
+. +++++..++ ++.+++++++||+|+++.++||+ ++.++++++.++|+ |||.+++.....+
T Consensus 88 ~~~~~~~~~~v~~~~~d------~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk-~gG~l~~~~~~~~ 155 (231)
T TIGR02752 88 QKVKDAGLHNVELVHGN------AMELPFDDNSFDYVTIGFGLRNVPDYMQVLREMYRVVK-PGGKVVCLETSQP 155 (231)
T ss_pred HHHHhcCCCceEEEEec------hhcCCCCCCCccEEEEecccccCCCHHHHHHHHHHHcC-cCeEEEEEECCCC
Confidence 52 456776654 55666778899999999999999 89999999999999 9999988654443
No 19
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.74 E-value=2.2e-17 Score=134.22 Aligned_cols=145 Identities=19% Similarity=0.244 Sum_probs=105.2
Q ss_pred hhhHHHHHHHHhhC--CCCh--HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh--------CCeEEEEcCCHHHH
Q 037961 3 ELFIKQANLYAVAR--PNYP--KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI--------YQHVIATDTSPKQL 68 (262)
Q Consensus 3 ~~F~~~a~~Y~~~r--p~yp--~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~--------~~~v~~vD~s~~~~ 68 (262)
+.|++.|..|+--= -+-+ .-.-+.....+ +++..+||++||||..+..+.++ ..+|+++|+||+||
T Consensus 64 ~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL 143 (296)
T KOG1540|consen 64 HVFESVAKKYDIMNDAMSLGIHRLWKDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHML 143 (296)
T ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHH
Confidence 45777787775420 0000 11122233333 36689999999999999998874 26899999999999
Q ss_pred HHHhcCC---------CceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 69 KFAIKLP---------NIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 69 ~~a~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
+.++++. .+.+++ +|++++|+++.+||..++++++..+ |++++++|++|||| |||+|.+..++
T Consensus 144 ~vgkqRa~~~~l~~~~~~~w~~------~dAE~LpFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLK-pGGrf~cLeFs 216 (296)
T KOG1540|consen 144 AVGKQRAKKRPLKASSRVEWVE------GDAEDLPFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLK-PGGRFSCLEFS 216 (296)
T ss_pred HHHHHHHhhcCCCcCCceEEEe------CCcccCCCCCCcceeEEEecceecCCCHHHHHHHHHHhcC-CCcEEEEEEcc
Confidence 9987641 245554 5799999999999999999999877 99999999999999 99999986554
Q ss_pred CCcccHHHHHhhccccc
Q 037961 139 MPEINESVGAVFKPFDT 155 (262)
Q Consensus 139 ~~~~~~~~~~~~~~~~~ 155 (262)
.-. ++.+..+++.+..
T Consensus 217 kv~-~~~l~~fy~~ysf 232 (296)
T KOG1540|consen 217 KVE-NEPLKWFYDQYSF 232 (296)
T ss_pred ccc-cHHHHHHHHhhhh
Confidence 322 2445555555544
No 20
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.73 E-value=2e-16 Score=134.12 Aligned_cols=99 Identities=17% Similarity=0.288 Sum_probs=83.4
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~ 106 (262)
+++.+|||||||+|..+..++.. +.+|+|+|+|+.|++.|+++ .++.+..++ +...++++++||+|++.
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D------~~~~~~~~~~FD~V~s~ 124 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEAND------ILKKDFPENTFDMIYSR 124 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECC------cccCCCCCCCeEEEEEh
Confidence 57789999999999999999775 67999999999999998863 356666654 55667788999999998
Q ss_pred cccccC---ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 107 SALHWF---DLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 107 ~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.+++++ ++..++++++++|| |||.|++..+
T Consensus 125 ~~l~h~~~~d~~~~l~~i~r~Lk-PGG~lvi~d~ 157 (263)
T PTZ00098 125 DAILHLSYADKKKLFEKCYKWLK-PNGILLITDY 157 (263)
T ss_pred hhHHhCCHHHHHHHHHHHHHHcC-CCcEEEEEEe
Confidence 887766 67789999999999 9999998554
No 21
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.71 E-value=1.5e-16 Score=133.82 Aligned_cols=124 Identities=16% Similarity=0.273 Sum_probs=94.1
Q ss_pred hhHH-HHHHH----HhhCCCChHHH--HHHHH-hhCCCCCeEEEEcCcccHhHHHHHh----hCCeEEEEcCCHHHHHHH
Q 037961 4 LFIK-QANLY----AVARPNYPKEL--FKLIA-SKTPKRNLAWDVGTRSGQAAASLAQ----IYQHVIATDTSPKQLKFA 71 (262)
Q Consensus 4 ~F~~-~a~~Y----~~~rp~yp~~~--~~~l~-~~~~~~~~vlDvGcG~G~~~~~l~~----~~~~v~~vD~s~~~~~~a 71 (262)
.|++ .|..| .+..|.|.... +..+. ...+++.+|||+|||+|..+..+++ .+.+++|+|+|+.|++.|
T Consensus 19 ~f~~~~a~~yd~~~~~~~p~y~~~~~~~~~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A 98 (247)
T PRK15451 19 TFDERVAEVFPDMIQRSVPGYSNIISMIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERC 98 (247)
T ss_pred ccChHHHHhhhhHHHhcCCChHHHHHHHHHHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHH
Confidence 3555 46788 55678885332 22232 3346778999999999999988876 257999999999999999
Q ss_pred hcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCCh---hHHHHHHHHhhcCCCeEEEEEe
Q 037961 72 IKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDL---PQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 72 ~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~---~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
+++ .++++++++ +.++++ +.+|+|+++.++|++++ ..++++++++|| |||.|++..
T Consensus 99 ~~~~~~~~~~~~v~~~~~d------~~~~~~--~~~D~vv~~~~l~~l~~~~~~~~l~~i~~~Lk-pGG~l~l~e 164 (247)
T PRK15451 99 RRHIDAYKAPTPVDVIEGD------IRDIAI--ENASMVVLNFTLQFLEPSERQALLDKIYQGLN-PGGALVLSE 164 (247)
T ss_pred HHHHHhcCCCCCeEEEeCC------hhhCCC--CCCCEEehhhHHHhCCHHHHHHHHHHHHHhcC-CCCEEEEEE
Confidence 753 257777654 555543 35899999999999943 459999999999 999999965
No 22
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.70 E-value=2.4e-16 Score=128.07 Aligned_cols=111 Identities=17% Similarity=0.229 Sum_probs=84.5
Q ss_pred hCCCChH-HHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCch
Q 037961 15 ARPNYPK-ELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSI 87 (262)
Q Consensus 15 ~rp~yp~-~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~ 87 (262)
+-+..|. .+.+.+ .. .++.+|||+|||+|..+..+++++.+|+|+|+|+.|++.+++. .++++...+
T Consensus 13 ~~~~~~~~~l~~~l-~~-~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d---- 86 (197)
T PRK11207 13 YGLTRTHSEVLEAV-KV-VKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVD---- 86 (197)
T ss_pred cCCCCChHHHHHhc-cc-CCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecC----
Confidence 3344543 444443 33 3457899999999999999999999999999999999988752 345555543
Q ss_pred hhhhhccCCCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEEE
Q 037961 88 TELEQNVATQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAAW 135 (262)
Q Consensus 88 ~~~~~~~~~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i~ 135 (262)
+.+.++ +++||+|+++.++||++ ...+++++.++|| |||.+++.
T Consensus 87 --~~~~~~-~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~~~~~ 133 (197)
T PRK11207 87 --LNNLTF-DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTK-PGGYNLIV 133 (197)
T ss_pred --hhhCCc-CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcC-CCcEEEEE
Confidence 444444 45799999999999984 4579999999999 99997653
No 23
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.69 E-value=1.7e-16 Score=117.06 Aligned_cols=96 Identities=23% Similarity=0.344 Sum_probs=78.1
Q ss_pred CCCeEEEEcCcccHhHHHHHh--hCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961 33 KRNLAWDVGTRSGQAAASLAQ--IYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLV 103 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~--~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V 103 (262)
|+.+|||+|||+|.++..+++ .+.+|+|+|+|+.|++.++++ +++++..++ +....-..+.||+|
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d------~~~~~~~~~~~D~v 74 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGD------AEFDPDFLEPFDLV 74 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESC------CHGGTTTSSCEEEE
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECc------cccCcccCCCCCEE
Confidence 467899999999999999999 689999999999999998752 688888876 31111234569999
Q ss_pred EEcc-ccccC-C---hhHHHHHHHHhhcCCCeEEEEE
Q 037961 104 TIAS-ALHWF-D---LPQFYKQVKWVLKKPSGVIAAW 135 (262)
Q Consensus 104 ~~~~-~~~~~-d---~~~~l~~~~r~Lk~pgG~l~i~ 135 (262)
++.. +++++ + ..++++++.+.|+ |||+|++-
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~L~-pgG~lvi~ 110 (112)
T PF12847_consen 75 ICSGFTLHFLLPLDERRRVLERIRRLLK-PGGRLVIN 110 (112)
T ss_dssp EECSGSGGGCCHHHHHHHHHHHHHHHEE-EEEEEEEE
T ss_pred EECCCccccccchhHHHHHHHHHHHhcC-CCcEEEEE
Confidence 9999 66644 3 4669999999999 99999983
No 24
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.69 E-value=1.6e-15 Score=129.31 Aligned_cols=189 Identities=16% Similarity=0.212 Sum_probs=117.2
Q ss_pred HHHHHHHhhCC-CCCeEEEEcCcccHhHHHHHhhC-----CeEEEEcCCHHHHHHHhcC-CCceEEeCCCCchhhhhhcc
Q 037961 22 ELFKLIASKTP-KRNLAWDVGTRSGQAAASLAQIY-----QHVIATDTSPKQLKFAIKL-PNIRYQLTPTMSITELEQNV 94 (262)
Q Consensus 22 ~~~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~-----~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~ 94 (262)
.+...+....+ +..+|||+|||+|.++..++... .+++|+|+|+.|++.|++. +++.+.+++ +.++|
T Consensus 73 ~i~~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d------~~~lp 146 (272)
T PRK11088 73 AVANLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVAS------SHRLP 146 (272)
T ss_pred HHHHHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEee------cccCC
Confidence 33344544444 44779999999999999988652 3789999999999998754 778887754 66678
Q ss_pred CCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcccccCCCCCCccccchhHHhcCC
Q 037961 95 ATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFDTIDCNPFWAPQRKLVDKKYM 174 (262)
Q Consensus 95 ~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (262)
+++++||+|++..+ ...++++.|+|| |||.|++.......+ .++++.. +. . +....... ...
T Consensus 147 ~~~~sfD~I~~~~~------~~~~~e~~rvLk-pgG~li~~~p~~~~l-~el~~~~---~~-~--~~~~~~~~---~~~- 208 (272)
T PRK11088 147 FADQSLDAIIRIYA------PCKAEELARVVK-PGGIVITVTPGPRHL-FELKGLI---YD-E--VRLHAPEA---EQL- 208 (272)
T ss_pred CcCCceeEEEEecC------CCCHHHHHhhcc-CCCEEEEEeCCCcch-HHHHHHh---cc-c--ccccccch---hhc-
Confidence 88999999998654 235689999999 999999876554332 2333322 11 0 00000000 000
Q ss_pred CCCCCCCCCCCCCCCCCCcceeEeEeecHHHHHHHHhhhhHHHHHHHhCCccchHHHHHHHHHHhccCCCCeEEEEEeEE
Q 037961 175 SIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKAKDKGVELLTENVMEKFKAAWNEDGQSQKIARFRVY 254 (262)
Q Consensus 175 ~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~ 254 (262)
.+ |+.++. ..+.....++-++.+.++..++.+....++ -++.+.+. ....+++.|.+.
T Consensus 209 -~g--F~~~~~-------~~~~~~~~l~~~~~~~ll~mtP~~~~~~~e--------~~~~~~~~----~~~~~~~~~~i~ 266 (272)
T PRK11088 209 -EG--FELQHS-------ERLAYPMRLTGSEAVALLQMTPFAWKATPE--------VKQQLAAK----GVFSCETDFNIR 266 (272)
T ss_pred -cC--CCeeeE-------EEEEEEEEeCHHHHHHHHcCCccccCCCHH--------HHHHHHcC----CCceEEEEEEEE
Confidence 12 332321 144555666667788888877766554444 23334321 112467777666
Q ss_pred EE
Q 037961 255 LR 256 (262)
Q Consensus 255 ~~ 256 (262)
++
T Consensus 267 ~~ 268 (272)
T PRK11088 267 VY 268 (272)
T ss_pred EE
Confidence 53
No 25
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.69 E-value=1.7e-16 Score=123.76 Aligned_cols=98 Identities=24% Similarity=0.375 Sum_probs=82.8
Q ss_pred CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhcc--CCCCcee
Q 037961 33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNV--ATQSSVD 101 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~D 101 (262)
++.+|||+|||+|.++..+++. +.+++|+|+|+.|++.|++ .+++++.+++ +.+++ ++ ++||
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d------~~~l~~~~~-~~~D 75 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGD------IEDLPQELE-EKFD 75 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESB------TTCGCGCSS-TTEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEee------hhccccccC-CCee
Confidence 5678999999999999999953 6799999999999999986 2578898876 33333 44 7899
Q ss_pred eEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 102 LVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 102 ~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
+|++..++||+ ++..+++++.++|+ +||.+++....
T Consensus 76 ~I~~~~~l~~~~~~~~~l~~~~~~lk-~~G~~i~~~~~ 112 (152)
T PF13847_consen 76 IIISNGVLHHFPDPEKVLKNIIRLLK-PGGILIISDPN 112 (152)
T ss_dssp EEEEESTGGGTSHHHHHHHHHHHHEE-EEEEEEEEEEE
T ss_pred EEEEcCchhhccCHHHHHHHHHHHcC-CCcEEEEEECC
Confidence 99999999999 88899999999999 99999985544
No 26
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.68 E-value=7.9e-16 Score=141.21 Aligned_cols=99 Identities=20% Similarity=0.322 Sum_probs=84.4
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVATQSSVDLVTI 105 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~ 105 (262)
+++.+|||+|||+|..+..++.. +.+|+|+|+|+.|++.|+++ .++.+..+| +...++++++||+|++
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d------~~~~~~~~~~fD~I~s 338 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVAD------CTKKTYPDNSFDVIYS 338 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcC------cccCCCCCCCEEEEEE
Confidence 46778999999999999998875 67999999999999998753 356666654 5556667789999999
Q ss_pred ccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 106 ASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 106 ~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
..+++|+ |+..++++++|+|| |||.|++..+
T Consensus 339 ~~~l~h~~d~~~~l~~~~r~Lk-pgG~l~i~~~ 370 (475)
T PLN02336 339 RDTILHIQDKPALFRSFFKWLK-PGGKVLISDY 370 (475)
T ss_pred CCcccccCCHHHHHHHHHHHcC-CCeEEEEEEe
Confidence 9999999 99999999999999 9999998544
No 27
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.68 E-value=4.8e-16 Score=122.65 Aligned_cols=128 Identities=20% Similarity=0.190 Sum_probs=96.5
Q ss_pred ChHHHHHHHHhhCCC--CCeEEEEcCcccHhHHHHH-hhCCeEEEEcCCHHHHHHHhc------CCCce-EEeCCCCchh
Q 037961 19 YPKELFKLIASKTPK--RNLAWDVGTRSGQAAASLA-QIYQHVIATDTSPKQLKFAIK------LPNIR-YQLTPTMSIT 88 (262)
Q Consensus 19 yp~~~~~~l~~~~~~--~~~vlDvGcG~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~------~~~~~-~~~~~~~~~~ 88 (262)
|..++++-+.....+ ...|||||||||..-...- ..+.+|+++|+++.|-+.+.+ ..++. ++++
T Consensus 60 ykrelFs~i~~~~gk~~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva------ 133 (252)
T KOG4300|consen 60 YKRELFSGIYYFLGKSGKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVA------ 133 (252)
T ss_pred HHHHHHhhhHHHhcccCccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEee------
Confidence 345666665544432 2346999999998766553 358899999999999998864 25666 5554
Q ss_pred hhhhcc-CCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcccc
Q 037961 89 ELEQNV-ATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPFD 154 (262)
Q Consensus 89 ~~~~~~-~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~~~ 154 (262)
+.++++ ++++++|.|++..++--. |+.+.++++.|+|| |||+++++.+..... .-+..+++...
T Consensus 134 ~ge~l~~l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLR-pgG~iifiEHva~~y-~~~n~i~q~v~ 199 (252)
T KOG4300|consen 134 DGENLPQLADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLR-PGGRIIFIEHVAGEY-GFWNRILQQVA 199 (252)
T ss_pred chhcCcccccCCeeeEEEEEEEeccCCHHHHHHHHHHhcC-CCcEEEEEecccccc-hHHHHHHHHHh
Confidence 577777 789999999999999988 99999999999999 999999988765442 34445555443
No 28
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.66 E-value=2.5e-17 Score=119.03 Aligned_cols=90 Identities=24% Similarity=0.353 Sum_probs=58.5
Q ss_pred EEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961 38 WDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL 109 (262)
Q Consensus 38 lDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~ 109 (262)
||+|||+|.++..+++. ..+++|+|+|+.|++.++++ .+........ .+.... ...++||+|++..++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~fD~V~~~~vl 76 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDV---LDLFDY-DPPESFDLVVASNVL 76 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--S---SS---C-CC----SEEEEE-TT
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeec---CChhhc-ccccccceehhhhhH
Confidence 79999999999999998 77999999999999877753 2222332221 111111 123699999999999
Q ss_pred ccC-ChhHHHHHHHHhhcCCCeEE
Q 037961 110 HWF-DLPQFYKQVKWVLKKPSGVI 132 (262)
Q Consensus 110 ~~~-d~~~~l~~~~r~Lk~pgG~l 132 (262)
||+ ++..+++.+.++|+ |||.|
T Consensus 77 ~~l~~~~~~l~~~~~~L~-pgG~l 99 (99)
T PF08242_consen 77 HHLEDIEAVLRNIYRLLK-PGGIL 99 (99)
T ss_dssp S--S-HHHHHHHHTTT-T-SS-EE
T ss_pred hhhhhHHHHHHHHHHHcC-CCCCC
Confidence 999 99999999999999 99986
No 29
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.66 E-value=2e-16 Score=129.39 Aligned_cols=100 Identities=25% Similarity=0.289 Sum_probs=80.6
Q ss_pred CCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961 34 RNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQNVATQSSVDLVTI 105 (262)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~ 105 (262)
++.|||+|||+|.++.+|++.|++|+|+|+++.|++.|++. .++.+... +...+++.. .+.||.|+|
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~--~~~~~~E~~---~~~fDaVvc 164 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLE--YEDTDVEGL---TGKFDAVVC 164 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeee--hhhcchhhc---ccccceeee
Confidence 47799999999999999999999999999999999999864 12222211 111234443 345999999
Q ss_pred ccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961 106 ASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 106 ~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
..+++|+ |++.++..+.++|| |||.+++.+...
T Consensus 165 sevleHV~dp~~~l~~l~~~lk-P~G~lfittinr 198 (282)
T KOG1270|consen 165 SEVLEHVKDPQEFLNCLSALLK-PNGRLFITTINR 198 (282)
T ss_pred HHHHHHHhCHHHHHHHHHHHhC-CCCceEeeehhh
Confidence 9999999 99999999999999 999999966653
No 30
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.66 E-value=7.9e-16 Score=133.78 Aligned_cols=124 Identities=18% Similarity=0.158 Sum_probs=96.9
Q ss_pred HHHHHHHHh-hCCC-ChHHHHHHHHhhC---CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC---C
Q 037961 6 IKQANLYAV-ARPN-YPKELFKLIASKT---PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL---P 75 (262)
Q Consensus 6 ~~~a~~Y~~-~rp~-yp~~~~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---~ 75 (262)
+..|..|+. .+|. +.+.+.+.+.+.. .++.+|||+|||+|..+..+++. +.+|+++|+|+.|++.|++. .
T Consensus 81 ~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~ 160 (340)
T PLN02490 81 RFLSIVYDHIINPGHWTEDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK 160 (340)
T ss_pred cceeeecCCCeecCcchHHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc
Confidence 344666665 2233 3345555555433 35679999999999999988875 46899999999999999864 4
Q ss_pred CceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 76 NIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
+++++.+ |++++++++++||+|+++.++|++ |++.+++++.++|| |||++++..
T Consensus 161 ~i~~i~g------D~e~lp~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLk-PGG~LvIi~ 215 (340)
T PLN02490 161 ECKIIEG------DAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLK-IGGKACLIG 215 (340)
T ss_pred CCeEEec------cHHhCCCCCCceeEEEEcChhhhCCCHHHHHHHHHHhcC-CCcEEEEEE
Confidence 6666654 577778888999999999999988 99999999999999 999998754
No 31
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.66 E-value=8.1e-16 Score=124.80 Aligned_cols=95 Identities=15% Similarity=0.245 Sum_probs=75.8
Q ss_pred CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC---CC--ceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL---PN--IRYQLTPTMSITELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~ 107 (262)
++.+|||+|||+|..+..+++++.+|+|+|+|+.|++.+++. .+ +.+... ++...++ +++||+|+++.
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~------d~~~~~~-~~~fD~I~~~~ 102 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAY------DINAAAL-NEDYDFIFSTV 102 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEec------cchhccc-cCCCCEEEEec
Confidence 456899999999999999999999999999999999987642 22 334333 3333443 35799999999
Q ss_pred ccccCC---hhHHHHHHHHhhcCCCeEEEEE
Q 037961 108 ALHWFD---LPQFYKQVKWVLKKPSGVIAAW 135 (262)
Q Consensus 108 ~~~~~d---~~~~l~~~~r~Lk~pgG~l~i~ 135 (262)
++|+++ ...+++++.++|+ |||.+++.
T Consensus 103 ~~~~~~~~~~~~~l~~~~~~Lk-pgG~lli~ 132 (195)
T TIGR00477 103 VFMFLQAGRVPEIIANMQAHTR-PGGYNLIV 132 (195)
T ss_pred ccccCCHHHHHHHHHHHHHHhC-CCcEEEEE
Confidence 999984 3569999999999 99996653
No 32
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.65 E-value=1.2e-15 Score=127.78 Aligned_cols=124 Identities=16% Similarity=0.234 Sum_probs=92.6
Q ss_pred hhH-HHHHHHHhh----CCCChHHHHHHH---Hh-hCCCCCeEEEEcCcccHhHHHHHhh----CCeEEEEcCCHHHHHH
Q 037961 4 LFI-KQANLYAVA----RPNYPKELFKLI---AS-KTPKRNLAWDVGTRSGQAAASLAQI----YQHVIATDTSPKQLKF 70 (262)
Q Consensus 4 ~F~-~~a~~Y~~~----rp~yp~~~~~~l---~~-~~~~~~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~ 70 (262)
.|+ ..|+.|+.. .|.|. ++.+.+ .. ..+++.+|||+|||+|..+..+++. +.+++|+|+|+.|++.
T Consensus 16 ~~~~~~a~~y~~~~~~~~p~y~-~~~~~~~~l~~~~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~ 94 (239)
T TIGR00740 16 IFDENVAEVFPDMIQRSVPGYS-NIITAIGMLAERFVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVER 94 (239)
T ss_pred ccChHHHHhCcchhhccCCCHH-HHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHH
Confidence 355 357788764 26664 333333 22 2357788999999999999998874 5689999999999999
Q ss_pred HhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEEEec
Q 037961 71 AIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 71 a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
|+++ .+++++.++ +..++++ .+|+|+++.++||+. ...+++++.++|+ |||.|++...
T Consensus 95 a~~~~~~~~~~~~v~~~~~d------~~~~~~~--~~d~v~~~~~l~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~d~ 162 (239)
T TIGR00740 95 CRQHIAAYHSEIPVEILCND------IRHVEIK--NASMVILNFTLQFLPPEDRIALLTKIYEGLN-PNGVLVLSEK 162 (239)
T ss_pred HHHHHHhcCCCCCeEEEECC------hhhCCCC--CCCEEeeecchhhCCHHHHHHHHHHHHHhcC-CCeEEEEeec
Confidence 8753 246777654 5555443 589999999999994 4669999999999 9999998543
No 33
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.65 E-value=1.5e-15 Score=132.17 Aligned_cols=103 Identities=20% Similarity=0.067 Sum_probs=84.4
Q ss_pred HHHHhhCC--CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhc-------CCCceEEeCCCCchhhhhhcc
Q 037961 25 KLIASKTP--KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIK-------LPNIRYQLTPTMSITELEQNV 94 (262)
Q Consensus 25 ~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~~~ 94 (262)
+.+..+++ ++.+|||||||+|.++..++..+. .|+|+|+|+.|+.+++. ..++.++.+ ++++++
T Consensus 112 ~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~------d~e~lp 185 (322)
T PRK15068 112 DRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPL------GIEQLP 185 (322)
T ss_pred HHHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeC------CHHHCC
Confidence 34444543 568999999999999999998875 59999999999875432 235777765 467777
Q ss_pred CCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEE
Q 037961 95 ATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAW 135 (262)
Q Consensus 95 ~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~ 135 (262)
+ +++||+|+|..++||. |+..++++++++|+ |||.|++-
T Consensus 186 ~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~Lk-pGG~lvl~ 225 (322)
T PRK15068 186 A-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLV-PGGELVLE 225 (322)
T ss_pred C-cCCcCEEEECChhhccCCHHHHHHHHHHhcC-CCcEEEEE
Confidence 6 7889999999999998 99999999999999 99999873
No 34
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.64 E-value=5.3e-16 Score=112.49 Aligned_cols=87 Identities=28% Similarity=0.512 Sum_probs=70.5
Q ss_pred EEEEcCcccHhHHHHHhhC-----CeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961 37 AWDVGTRSGQAAASLAQIY-----QHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 37 vlDvGcG~G~~~~~l~~~~-----~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~ 106 (262)
|||+|||+|..+..+.+.+ .+++|+|+|+.|++.+++. .++++.++| +.+++..+++||+|++.
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D------~~~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQAD------ARDLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESC------TTCHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECC------HhHCcccCCCeeEEEEc
Confidence 6999999999999999875 7999999999999998853 478888765 55566678899999995
Q ss_pred -cccccCC---hhHHHHHHHHhhcCCCe
Q 037961 107 -SALHWFD---LPQFYKQVKWVLKKPSG 130 (262)
Q Consensus 107 -~~~~~~d---~~~~l~~~~r~Lk~pgG 130 (262)
.++|+++ ..++++++.++|| |||
T Consensus 75 ~~~~~~~~~~~~~~ll~~~~~~l~-pgG 101 (101)
T PF13649_consen 75 GLSLHHLSPEELEALLRRIARLLR-PGG 101 (101)
T ss_dssp TTGGGGSSHHHHHHHHHHHHHTEE-EEE
T ss_pred CCccCCCCHHHHHHHHHHHHHHhC-CCC
Confidence 5499895 3458999999999 998
No 35
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.62 E-value=4.8e-15 Score=127.90 Aligned_cols=103 Identities=18% Similarity=0.022 Sum_probs=81.6
Q ss_pred HHHhhC--CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhc-------CCCceEEeCCCCchhhhhhccC
Q 037961 26 LIASKT--PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIK-------LPNIRYQLTPTMSITELEQNVA 95 (262)
Q Consensus 26 ~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~~~~~~~ 95 (262)
.+..++ .++.+|||+|||+|.++..++..++ .|+|+|+|+.|+.+++. ..++.+... ++++++.
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~------~ie~lp~ 185 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPL------GIEQLHE 185 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEEC------CHHHCCC
Confidence 344443 3568999999999999999988876 69999999999876431 134555544 3566654
Q ss_pred CCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 96 TQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 96 ~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
..+||+|+|+.+++|. ++..++++++++|| |||.|++.+
T Consensus 186 -~~~FD~V~s~gvL~H~~dp~~~L~el~r~Lk-pGG~Lvlet 225 (314)
T TIGR00452 186 -LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLV-IKGELVLET 225 (314)
T ss_pred -CCCcCEEEEcchhhccCCHHHHHHHHHHhcC-CCCEEEEEE
Confidence 3589999999999999 99999999999999 999999843
No 36
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.62 E-value=1.2e-14 Score=121.34 Aligned_cols=129 Identities=22% Similarity=0.236 Sum_probs=98.5
Q ss_pred hhhHHHHHHHHhhC--C--CChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhc
Q 037961 3 ELFIKQANLYAVAR--P--NYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIK 73 (262)
Q Consensus 3 ~~F~~~a~~Y~~~r--p--~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~ 73 (262)
..|+..++.|++.. . .+.......+.... .++.+|||+|||+|..+..+++.+ .+++++|+++.+++.+++
T Consensus 15 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~ 94 (239)
T PRK00216 15 EMFDSIAPKYDLMNDLLSFGLHRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGRE 94 (239)
T ss_pred HHHHHhhhhHHHHHHHHhcCCcHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHH
Confidence 57888999997531 1 22333333333332 356789999999999999998875 799999999999999886
Q ss_pred C-------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 74 L-------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 74 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
. .++.+..++ +...+.+.++||+|+++.++|++ ++..+++++.++|+ |||.+++....
T Consensus 95 ~~~~~~~~~~~~~~~~d------~~~~~~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~-~gG~li~~~~~ 160 (239)
T PRK00216 95 KLRDLGLSGNVEFVQGD------AEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLK-PGGRLVILEFS 160 (239)
T ss_pred hhcccccccCeEEEecc------cccCCCCCCCccEEEEecccccCCCHHHHHHHHHHhcc-CCcEEEEEEec
Confidence 4 345565544 44455567889999999999999 99999999999999 99999885543
No 37
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.62 E-value=8.6e-15 Score=119.42 Aligned_cols=102 Identities=21% Similarity=0.279 Sum_probs=80.4
Q ss_pred HHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc-CCCceEEeCCCCchhhhhhccCCCCceee
Q 037961 26 LIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK-LPNIRYQLTPTMSITELEQNVATQSSVDL 102 (262)
Q Consensus 26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 102 (262)
.++...++..+|||+|||+|..+..+++. +.+++|+|+|+.|++.|++ .+++.+.+++ +.+ ++++++||+
T Consensus 36 ~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d------~~~-~~~~~sfD~ 108 (204)
T TIGR03587 36 RALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGS------LFD-PFKDNFFDL 108 (204)
T ss_pred HHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEee------ccC-CCCCCCEEE
Confidence 33445567788999999999999999886 6799999999999999987 4677777654 444 667889999
Q ss_pred EEEccccccCCh---hHHHHHHHHhhcCCCeEEEEEec
Q 037961 103 VTIASALHWFDL---PQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 103 V~~~~~~~~~d~---~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
|+++.++||+++ .++++++.|+++ +.++++.+
T Consensus 109 V~~~~vL~hl~p~~~~~~l~el~r~~~---~~v~i~e~ 143 (204)
T TIGR03587 109 VLTKGVLIHINPDNLPTAYRELYRCSN---RYILIAEY 143 (204)
T ss_pred EEECChhhhCCHHHHHHHHHHHHhhcC---cEEEEEEe
Confidence 999999999864 447777777754 46666554
No 38
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.61 E-value=5.7e-15 Score=125.98 Aligned_cols=99 Identities=25% Similarity=0.313 Sum_probs=83.6
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh-C--CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceee
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI-Y--QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDL 102 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 102 (262)
+++.+|||+|||+|..+..++.. + .+|+++|+++.|++.|+++ .++++..+ +++.+++++++||+
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~------d~~~l~~~~~~fD~ 149 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLG------EIEALPVADNSVDV 149 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEc------chhhCCCCCCceeE
Confidence 47789999999999988877664 3 3799999999999999863 45666654 46777777889999
Q ss_pred EEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 103 VTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 103 V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
|+++.++|+. +..++++++.++|| |||+|++...
T Consensus 150 Vi~~~v~~~~~d~~~~l~~~~r~Lk-pGG~l~i~~~ 184 (272)
T PRK11873 150 IISNCVINLSPDKERVFKEAFRVLK-PGGRFAISDV 184 (272)
T ss_pred EEEcCcccCCCCHHHHHHHHHHHcC-CCcEEEEEEe
Confidence 9999999999 89999999999999 9999998543
No 39
>PRK06922 hypothetical protein; Provisional
Probab=99.60 E-value=3.1e-15 Score=137.85 Aligned_cols=97 Identities=21% Similarity=0.152 Sum_probs=79.4
Q ss_pred CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhcc--CCCCceeeE
Q 037961 33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNV--ATQSSVDLV 103 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~D~V 103 (262)
++.+|||+|||+|..+..+++. +.+++|+|+|+.|++.|++. .++.++.++ +.+++ +++++||+|
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gD------a~dLp~~fedeSFDvV 491 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGD------AINLSSSFEKESVDTI 491 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcc------hHhCccccCCCCEEEE
Confidence 5678999999999999988875 56999999999999998753 234555554 44555 678899999
Q ss_pred EEccccccC--------------ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 104 TIASALHWF--------------DLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 104 ~~~~~~~~~--------------d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
+++.++||+ +..+++++++++|| |||.+++..
T Consensus 492 Vsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLK-PGGrLII~D 537 (677)
T PRK06922 492 VYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLK-PGGRIIIRD 537 (677)
T ss_pred EEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcC-CCcEEEEEe
Confidence 999999964 34679999999999 999999854
No 40
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.60 E-value=2.4e-14 Score=118.21 Aligned_cols=130 Identities=25% Similarity=0.258 Sum_probs=100.6
Q ss_pred hhhhHHHHHHHHhhCCCC----hHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCC---eEEEEcCCHHHHHHHh
Q 037961 2 AELFIKQANLYAVARPNY----PKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQ---HVIATDTSPKQLKFAI 72 (262)
Q Consensus 2 ~~~F~~~a~~Y~~~rp~y----p~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~ 72 (262)
.+.|+..+..|+.....+ .......+.... .++.+|||+|||+|..+..+++.+. +++++|+++.+++.++
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~ 81 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFGLHRLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAK 81 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcccHHHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHH
Confidence 357899999999874322 122233333332 3678999999999999999988743 8999999999999887
Q ss_pred cC----CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 73 KL----PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 73 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
+. .++.+..++ +.+.+++.++||+|+++.++|++ ++..+++++.++|+ |||++++....
T Consensus 82 ~~~~~~~~i~~~~~d------~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~~~~~~ 145 (223)
T TIGR01934 82 KKSELPLNIEFIQAD------AEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLK-PGGRLVILEFS 145 (223)
T ss_pred HHhccCCCceEEecc------hhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcC-CCcEEEEEEec
Confidence 53 356666654 45555667789999999999999 99999999999999 99999986654
No 41
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.59 E-value=5.1e-15 Score=120.76 Aligned_cols=99 Identities=20% Similarity=0.222 Sum_probs=80.8
Q ss_pred CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhh-hhcc--CCCCcee
Q 037961 33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITEL-EQNV--ATQSSVD 101 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~-~~~~--~~~~~~D 101 (262)
+..+|||+|||+|..+..++.. +.+|+|+|+|+.|++.+++. .++.+++++ + +.++ +++++||
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d------~~~~l~~~~~~~~~D 113 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGD------AVEVLLDMFPDGSLD 113 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecC------HHHHHHHHcCccccc
Confidence 5678999999999999999876 45899999999999988752 567777765 4 4444 6678999
Q ss_pred eEEEccccccCC---------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 102 LVTIASALHWFD---------LPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 102 ~V~~~~~~~~~d---------~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
+|+++.+.+|.. ...+++++.++|| |||.|++....
T Consensus 114 ~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~Lk-pgG~l~i~~~~ 158 (202)
T PRK00121 114 RIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLK-PGGEIHFATDW 158 (202)
T ss_pred eEEEECCCCCCCccccccccCCHHHHHHHHHHcC-CCCEEEEEcCC
Confidence 999988877752 4679999999999 99999985533
No 42
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.58 E-value=3.8e-14 Score=116.28 Aligned_cols=111 Identities=16% Similarity=0.016 Sum_probs=82.8
Q ss_pred hHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------------------CCceE
Q 037961 20 PKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------------------PNIRY 79 (262)
Q Consensus 20 p~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------------------~~~~~ 79 (262)
|...+..+.... +++.+|||+|||.|..+..|+++|.+|+|+|+|+.+++.+.+. .++++
T Consensus 19 p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 98 (213)
T TIGR03840 19 VNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEI 98 (213)
T ss_pred CCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEE
Confidence 444444444443 5678999999999999999999999999999999999986321 23555
Q ss_pred EeCCCCchhhhhhccCC-CCceeeEEEccccccCChh---HHHHHHHHhhcCCCeEEEEEec
Q 037961 80 QLTPTMSITELEQNVAT-QSSVDLVTIASALHWFDLP---QFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~-~~~~D~V~~~~~~~~~d~~---~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.++| +.++... .++||.|+-..++|+++++ ..++.+.++|| |||++++.++
T Consensus 99 ~~~D------~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLk-pgG~~ll~~~ 153 (213)
T TIGR03840 99 FCGD------FFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLP-PGARQLLITL 153 (213)
T ss_pred EEcc------CCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcC-CCCeEEEEEE
Confidence 5554 4333321 3579999998888888443 48999999999 9998776444
No 43
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.57 E-value=2.4e-14 Score=114.96 Aligned_cols=97 Identities=23% Similarity=0.231 Sum_probs=78.4
Q ss_pred hhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCce
Q 037961 29 SKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSV 100 (262)
Q Consensus 29 ~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (262)
...+++.+|||+|||+|..+..++.. +.+|+++|+|+.|++.|++. .++++..++ +++.+. +++|
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d------~~~~~~-~~~f 113 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGR------AEEFGQ-EEKF 113 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEecc------HhhCCC-CCCc
Confidence 34456889999999999999988863 67999999999999988752 457777764 445544 6789
Q ss_pred eeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 101 DLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 101 D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
|+|+++. ..+.+.++++++++|| |||++++..
T Consensus 114 DlV~~~~---~~~~~~~l~~~~~~Lk-pGG~lv~~~ 145 (187)
T PRK00107 114 DVVTSRA---VASLSDLVELCLPLLK-PGGRFLALK 145 (187)
T ss_pred cEEEEcc---ccCHHHHHHHHHHhcC-CCeEEEEEe
Confidence 9999864 2378899999999999 999999854
No 44
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.57 E-value=1.1e-14 Score=123.35 Aligned_cols=95 Identities=25% Similarity=0.366 Sum_probs=74.4
Q ss_pred CCCeEEEEcCcccH----hHHHHHhh-------CCeEEEEcCCHHHHHHHhcC---------------------------
Q 037961 33 KRNLAWDVGTRSGQ----AAASLAQI-------YQHVIATDTSPKQLKFAIKL--------------------------- 74 (262)
Q Consensus 33 ~~~~vlDvGcG~G~----~~~~l~~~-------~~~v~~vD~s~~~~~~a~~~--------------------------- 74 (262)
++.+|||+|||||. ++..+++. ..+|+|+|+|+.|++.|++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45689999999996 45555543 35899999999999999863
Q ss_pred ------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCCh---hHHHHHHHHhhcCCCeEEEE
Q 037961 75 ------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDL---PQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 75 ------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~---~~~l~~~~r~Lk~pgG~l~i 134 (262)
.++.+.+. |+.+.+++.++||+|+|.+++||++. .++++++.++|+ |||.|++
T Consensus 179 v~~~ir~~V~F~~~------dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~-pGG~L~l 240 (264)
T smart00138 179 VKPELKERVRFAKH------NLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALK-PGGYLFL 240 (264)
T ss_pred EChHHhCcCEEeec------cCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhC-CCeEEEE
Confidence 13444443 45555556789999999999999953 359999999999 9999998
No 45
>PRK06202 hypothetical protein; Provisional
Probab=99.57 E-value=1.5e-14 Score=120.53 Aligned_cols=89 Identities=24% Similarity=0.317 Sum_probs=71.0
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh----C--CeEEEEcCCHHHHHHHhcC---CCceEEeCCCCchhhhhhccCCCCceee
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI----Y--QHVIATDTSPKQLKFAIKL---PNIRYQLTPTMSITELEQNVATQSSVDL 102 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~----~--~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 102 (262)
++..+|||+|||+|.++..|+.. + .+|+|+|+|+.|++.|++. .++++...+ +..++.++++||+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~------~~~l~~~~~~fD~ 132 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAV------SDELVAEGERFDV 132 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEe------cccccccCCCccE
Confidence 45678999999999999988752 3 4899999999999999864 455665543 3334446789999
Q ss_pred EEEccccccC-Ch--hHHHHHHHHhhc
Q 037961 103 VTIASALHWF-DL--PQFYKQVKWVLK 126 (262)
Q Consensus 103 V~~~~~~~~~-d~--~~~l~~~~r~Lk 126 (262)
|+++.++||+ |. ..+++++.|+++
T Consensus 133 V~~~~~lhh~~d~~~~~~l~~~~r~~~ 159 (232)
T PRK06202 133 VTSNHFLHHLDDAEVVRLLADSAALAR 159 (232)
T ss_pred EEECCeeecCChHHHHHHHHHHHHhcC
Confidence 9999999999 53 359999999987
No 46
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.57 E-value=3.5e-14 Score=122.02 Aligned_cols=105 Identities=22% Similarity=0.297 Sum_probs=80.7
Q ss_pred HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccC
Q 037961 21 KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVA 95 (262)
Q Consensus 21 ~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~ 95 (262)
.++...+ ... ++.+|||+|||+|..+..++..+.+|+|+|+|+.+++.+++. .++.+...| +....+
T Consensus 110 ~~~~~~~-~~~-~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D------~~~~~~ 181 (287)
T PRK12335 110 SEVLEAV-QTV-KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYD------INSASI 181 (287)
T ss_pred HHHHHHh-hcc-CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEec------hhcccc
Confidence 4445444 223 345899999999999999999999999999999999988753 245555443 333333
Q ss_pred CCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEEE
Q 037961 96 TQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAAW 135 (262)
Q Consensus 96 ~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i~ 135 (262)
+++||+|++..++|+++ ...+++++.++|+ |||.+++.
T Consensus 182 -~~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~Lk-pgG~~l~v 222 (287)
T PRK12335 182 -QEEYDFILSTVVLMFLNRERIPAIIKNMQEHTN-PGGYNLIV 222 (287)
T ss_pred -cCCccEEEEcchhhhCCHHHHHHHHHHHHHhcC-CCcEEEEE
Confidence 67899999999999985 4458999999999 99997663
No 47
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.56 E-value=3.2e-14 Score=116.57 Aligned_cols=106 Identities=16% Similarity=0.088 Sum_probs=78.4
Q ss_pred CCCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhh--ccCCCCceeeEEE
Q 037961 31 TPKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQ--NVATQSSVDLVTI 105 (262)
Q Consensus 31 ~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~V~~ 105 (262)
.+++..|||+|||||.++..+++.. ..|+|+|+++ | ...+++.++++|.......+. -++.+++||+|++
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 4678899999999999999998863 5899999997 3 234678888887211110111 1245788999999
Q ss_pred ccccccC-Ch-----------hHHHHHHHHhhcCCCeEEEEEecCCCcc
Q 037961 106 ASALHWF-DL-----------PQFYKQVKWVLKKPSGVIAAWTYTMPEI 142 (262)
Q Consensus 106 ~~~~~~~-d~-----------~~~l~~~~r~Lk~pgG~l~i~~~~~~~~ 142 (262)
+.+.+|. ++ ..+++++.++|| |||.|++-.+....+
T Consensus 124 ~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lk-pGG~~vi~~~~~~~~ 171 (209)
T PRK11188 124 DMAPNMSGTPAVDIPRAMYLVELALDMCRDVLA-PGGSFVVKVFQGEGF 171 (209)
T ss_pred CCCCccCCChHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEEecCcCH
Confidence 9888886 32 458999999999 999999855554443
No 48
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.54 E-value=2.4e-14 Score=113.42 Aligned_cols=98 Identities=21% Similarity=0.319 Sum_probs=75.9
Q ss_pred CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc----CCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK----LPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~ 108 (262)
...++||+|||.|.+|..|++++.+++++|+|+..++.|++ .+++++.+.+ +.+. .+.++||+|+++..
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~d------vp~~-~P~~~FDLIV~SEV 115 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQAD------VPEF-WPEGRFDLIVLSEV 115 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-------TTT----SS-EEEEEEES-
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECc------CCCC-CCCCCeeEEEEehH
Confidence 44789999999999999999999999999999999999985 3789999876 2222 36889999999999
Q ss_pred cccC-Chh---HHHHHHHHhhcCCCeEEEEEecC
Q 037961 109 LHWF-DLP---QFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 109 ~~~~-d~~---~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
+|++ +.+ .++..+...|+ |||.|++-+..
T Consensus 116 lYYL~~~~~L~~~l~~l~~~L~-pgG~LV~g~~r 148 (201)
T PF05401_consen 116 LYYLDDAEDLRAALDRLVAALA-PGGHLVFGHAR 148 (201)
T ss_dssp GGGSSSHHHHHHHHHHHHHTEE-EEEEEEEEEE-
T ss_pred hHcCCCHHHHHHHHHHHHHHhC-CCCEEEEEEec
Confidence 9999 433 37899999999 99999995543
No 49
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=4.4e-14 Score=118.65 Aligned_cols=106 Identities=24% Similarity=0.271 Sum_probs=85.8
Q ss_pred HHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhc
Q 037961 24 FKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQN 93 (262)
Q Consensus 24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~ 93 (262)
++.+.+++ .++++|||||||.|.+++.+++. +.+|+|+++|++|.+.+++. .++++...| -.+
T Consensus 61 ~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d------~rd- 133 (283)
T COG2230 61 LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQD------YRD- 133 (283)
T ss_pred HHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecc------ccc-
Confidence 55566654 59999999999999999999997 69999999999999998862 255555433 222
Q ss_pred cCCCCceeeEEEccccccC-C--hhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961 94 VATQSSVDLVTIASALHWF-D--LPQFYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 94 ~~~~~~~D~V~~~~~~~~~-d--~~~~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
..+.||-|+|..+++++ . .+.+++.+.++|+ |||.+++.+...
T Consensus 134 --~~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~-~~G~~llh~I~~ 179 (283)
T COG2230 134 --FEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLK-PGGRMLLHSITG 179 (283)
T ss_pred --cccccceeeehhhHHHhCcccHHHHHHHHHhhcC-CCceEEEEEecC
Confidence 34559999999999999 3 6779999999999 999999865543
No 50
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.54 E-value=3.8e-14 Score=130.09 Aligned_cols=98 Identities=20% Similarity=0.210 Sum_probs=82.0
Q ss_pred CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc----CCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK----LPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~ 108 (262)
++.+|||+|||+|..+..+++.+.+|+|+|+++.|++.+++ .+++.+++++. ....+++++++||+|++..+
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~----~~~~~~~~~~~fD~I~~~~~ 112 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADV----TSPDLNISDGSVDLIFSNWL 112 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecc----cccccCCCCCCEEEEehhhh
Confidence 45689999999999999999999999999999999998764 24677777651 11235667889999999999
Q ss_pred cccC-C--hhHHHHHHHHhhcCCCeEEEEE
Q 037961 109 LHWF-D--LPQFYKQVKWVLKKPSGVIAAW 135 (262)
Q Consensus 109 ~~~~-d--~~~~l~~~~r~Lk~pgG~l~i~ 135 (262)
+||+ + ...+++++.++|| |||.+++.
T Consensus 113 l~~l~~~~~~~~l~~~~r~Lk-~gG~l~~~ 141 (475)
T PLN02336 113 LMYLSDKEVENLAERMVKWLK-VGGYIFFR 141 (475)
T ss_pred HHhCCHHHHHHHHHHHHHhcC-CCeEEEEE
Confidence 9999 4 4679999999999 99999883
No 51
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.54 E-value=7.3e-14 Score=111.86 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=83.7
Q ss_pred HHHhhCCCChHHHHHH-----HH--hhCCCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhc------CC
Q 037961 11 LYAVARPNYPKELFKL-----IA--SKTPKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIK------LP 75 (262)
Q Consensus 11 ~Y~~~rp~yp~~~~~~-----l~--~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~------~~ 75 (262)
.+.-.||.-|.++... +. ... ++.+|||+|||+|..+..++..+ .+|+|+|+|+.|++.+++ ..
T Consensus 14 ~~~l~~~~~~~~~~~~~~~d~i~~~~~~-~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~ 92 (181)
T TIGR00138 14 RFNLTSLKTPEEIWERHILDSLKLLEYL-DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN 92 (181)
T ss_pred cccccccCCHHHHHHHHHHHHHHHHHhc-CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC
Confidence 3444677766555222 21 222 47889999999999999987653 589999999999987764 24
Q ss_pred CceEEeCCCCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 76 NIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
+++++.++ ++++. ..++||+|++.. + .+.+.+++.+.++|+ |||.++++.
T Consensus 93 ~i~~i~~d------~~~~~-~~~~fD~I~s~~-~--~~~~~~~~~~~~~Lk-pgG~lvi~~ 142 (181)
T TIGR00138 93 NVEIVNGR------AEDFQ-HEEQFDVITSRA-L--ASLNVLLELTLNLLK-VGGYFLAYK 142 (181)
T ss_pred CeEEEecc------hhhcc-ccCCccEEEehh-h--hCHHHHHHHHHHhcC-CCCEEEEEc
Confidence 67777765 44443 357899999865 3 367778999999999 999999864
No 52
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.53 E-value=1.1e-13 Score=109.77 Aligned_cols=111 Identities=23% Similarity=0.291 Sum_probs=81.2
Q ss_pred CCCeEEEEcCcccHhHHHHHhhCCe--EEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIYQH--VIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLVT 104 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~--v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~ 104 (262)
+..+|||+|||+|.++..++..+.+ |+++|+++.+++.++++ .++++...|. .+. +++++||+|+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~-----~~~--~~~~~fD~Iv 103 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDL-----FEA--LPDGKFDLIV 103 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESST-----TTT--CCTTCEEEEE
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccc-----ccc--ccccceeEEE
Confidence 6678999999999999999998665 99999999999998752 3367777652 122 2478999999
Q ss_pred EccccccCC------hhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhc
Q 037961 105 IASALHWFD------LPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFK 151 (262)
Q Consensus 105 ~~~~~~~~d------~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~ 151 (262)
++..+|.-. ..++++++.+.|+ |||.|++...........+.+++.
T Consensus 104 ~NPP~~~~~~~~~~~~~~~i~~a~~~Lk-~~G~l~lv~~~~~~~~~~l~~~f~ 155 (170)
T PF05175_consen 104 SNPPFHAGGDDGLDLLRDFIEQARRYLK-PGGRLFLVINSHLGYERLLKELFG 155 (170)
T ss_dssp E---SBTTSHCHHHHHHHHHHHHHHHEE-EEEEEEEEEETTSCHHHHHHHHHS
T ss_pred EccchhcccccchhhHHHHHHHHHHhcc-CCCEEEEEeecCCChHHHHHHhcC
Confidence 999988773 3568999999999 999998755444333333444443
No 53
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=99.53 E-value=1.5e-13 Score=110.30 Aligned_cols=240 Identities=21% Similarity=0.265 Sum_probs=143.4
Q ss_pred hhHHHHHHHHhhCCC--------C-hHHHHHHHHhh----CCCCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHH
Q 037961 4 LFIKQANLYAVARPN--------Y-PKELFKLIASK----TPKRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLK 69 (262)
Q Consensus 4 ~F~~~a~~Y~~~rp~--------y-p~~~~~~l~~~----~~~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~ 69 (262)
.|+++...-.+.|.. | .+++...++.. .+....++|+|||-|...+++...+ .+++-+|.|-.|++
T Consensus 30 iFDR~~KR~qrdrAa~~~d~k~dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~ 109 (325)
T KOG2940|consen 30 IFDRDLKRIQRDRAAWLSDQKNDYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIK 109 (325)
T ss_pred hhhhHHHHHHHhHHhhcchhhhhHHHHHHHHHHHHHHHHHhhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHH
Confidence 466666555554432 2 23333333333 3567789999999999999998875 57999999999999
Q ss_pred HHhcC--CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHH-
Q 037961 70 FAIKL--PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINES- 145 (262)
Q Consensus 70 ~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~- 145 (262)
.++.- +.+....- .+|-+.+++.++++|+|+++.++||. |.+..+.+|...|| |+|.|+..-.+...+.+.
T Consensus 110 s~~~~qdp~i~~~~~----v~DEE~Ldf~ens~DLiisSlslHW~NdLPg~m~~ck~~lK-PDg~FiasmlggdTLyELR 184 (325)
T KOG2940|consen 110 SCRDAQDPSIETSYF----VGDEEFLDFKENSVDLIISSLSLHWTNDLPGSMIQCKLALK-PDGLFIASMLGGDTLYELR 184 (325)
T ss_pred HhhccCCCceEEEEE----ecchhcccccccchhhhhhhhhhhhhccCchHHHHHHHhcC-CCccchhHHhccccHHHHH
Confidence 99854 44443222 14567788899999999999999999 99999999999999 999998644443332111
Q ss_pred ----HHHhhcccccCCCCCCccc--cchhHHhcCCCCCCCCCCCCCCCCCCCCcceeEeEeecHHHHHHHHhhhhHHHHH
Q 037961 146 ----VGAVFKPFDTIDCNPFWAP--QRKLVDKKYMSIDFPFEPVDGYENTGPFDQFVVEKMMDLDDYFKFIRSCSAYQKA 219 (262)
Q Consensus 146 ----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~~~~~ 219 (262)
+.++ .+. +...|...| +.+-+-+.+...+|..-.++ ++ .+. ...-.+-+++.-|+...-....
T Consensus 185 ~slqLAel-ER~--GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD----tD---Ei~-v~Yp~mfeLm~dLq~MgEsn~~ 253 (325)
T KOG2940|consen 185 CSLQLAEL-ERE--GGISPHISPFTQVRDIGNLLTRAGFSMLTVD----TD---EIV-VGYPRMFELMEDLQGMGESNAA 253 (325)
T ss_pred HHhhHHHH-Hhc--cCCCCCcChhhhhhhhhhHHhhcCcccceec----cc---cee-ecCchHHHHHHHHHhhcccchh
Confidence 1111 111 133444333 11223344555554322222 11 111 1111333344444433332222
Q ss_pred HHh----CCccchHHHHHHHHHHhccCCCCeEEEEEeEEEEEEEeC
Q 037961 220 KDK----GVELLTENVMEKFKAAWNEDGQSQKIARFRVYLRIGKVG 261 (262)
Q Consensus 220 ~~~----~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~rk~ 261 (262)
... +++.+.. -.+..++.+..++ +.++.+|.+++++|=|+
T Consensus 254 ~~Rn~~l~Ret~vA-aaAiY~smya~e~-~~iPATfqiiy~iGWk~ 297 (325)
T KOG2940|consen 254 LNRNAILNRETMVA-AAAIYQSMYATED-GTIPATFQIIYMIGWKP 297 (325)
T ss_pred hccCccccHHHHHH-HHHHHHHHhcCCC-CCcceeEEEEEEEccCc
Confidence 222 2333333 2344566666655 47999999999999875
No 54
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.53 E-value=9.7e-14 Score=117.87 Aligned_cols=101 Identities=20% Similarity=0.308 Sum_probs=75.9
Q ss_pred HHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhc
Q 037961 24 FKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQN 93 (262)
Q Consensus 24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~ 93 (262)
++.+.+.+ +++.+|||||||.|.++..++++ |++|+|+.+|+++.+.+++. ..+.+...| ..++
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D------~~~~ 124 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQD------YRDL 124 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-------GGG-
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEee------cccc
Confidence 55666664 58999999999999999999997 99999999999999998742 346666543 4443
Q ss_pred cCCCCceeeEEEccccccC---ChhHHHHHHHHhhcCCCeEEEE
Q 037961 94 VATQSSVDLVTIASALHWF---DLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 94 ~~~~~~~D~V~~~~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+ .+||.|++..++.++ +...+++++.++|| |||.+++
T Consensus 125 ~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lk-pgG~~~l 164 (273)
T PF02353_consen 125 P---GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLK-PGGRLVL 164 (273)
T ss_dssp -----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSE-TTEEEEE
T ss_pred C---CCCCEEEEEechhhcChhHHHHHHHHHHHhcC-CCcEEEE
Confidence 2 389999999999999 34679999999999 9999997
No 55
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.52 E-value=5.6e-14 Score=116.44 Aligned_cols=94 Identities=19% Similarity=0.211 Sum_probs=77.8
Q ss_pred eEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961 36 LAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 36 ~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~ 106 (262)
+|||+|||+|..+..+++.+ .+|+|+|+|+.+++.++++ .++++...| +...++ .++||+|++.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d------~~~~~~-~~~fD~I~~~ 74 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRD------SAKDPF-PDTYDLVFGF 74 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecc------cccCCC-CCCCCEeehH
Confidence 58999999999999998863 6899999999999988753 345666654 333333 3589999999
Q ss_pred cccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 107 SALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 107 ~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.++|++ ++..+++++.++|| |||.+++...
T Consensus 75 ~~l~~~~~~~~~l~~~~~~Lk-pgG~l~i~~~ 105 (224)
T smart00828 75 EVIHHIKDKMDLFSNISRHLK-DGGHLVLADF 105 (224)
T ss_pred HHHHhCCCHHHHHHHHHHHcC-CCCEEEEEEc
Confidence 999999 89999999999999 9999998543
No 56
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.50 E-value=1.7e-13 Score=121.99 Aligned_cols=105 Identities=20% Similarity=0.241 Sum_probs=82.4
Q ss_pred HHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC---CCceEEeCCCCchhhhhhccCCC
Q 037961 24 FKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL---PNIRYQLTPTMSITELEQNVATQ 97 (262)
Q Consensus 24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~ 97 (262)
++.+.... +++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++ ..+++...+ ...+ +
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D------~~~l---~ 226 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQD------YRDL---N 226 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECc------hhhc---C
Confidence 33444443 47789999999999999999875 78999999999999999864 234444433 3333 4
Q ss_pred CceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 98 SSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 98 ~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
++||.|++..+++|+. .+.+++++.++|| |||.+++....
T Consensus 227 ~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~Lk-pGG~lvl~~i~ 269 (383)
T PRK11705 227 GQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLK-PDGLFLLHTIG 269 (383)
T ss_pred CCCCEEEEeCchhhCChHHHHHHHHHHHHHcC-CCcEEEEEEcc
Confidence 6899999999999983 4679999999999 99999986544
No 57
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.50 E-value=1.6e-13 Score=111.35 Aligned_cols=95 Identities=14% Similarity=0.133 Sum_probs=77.1
Q ss_pred HHHHhhCCCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhh-c-cCCCCcee
Q 037961 25 KLIASKTPKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQ-N-VATQSSVD 101 (262)
Q Consensus 25 ~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~D 101 (262)
+.+.+.++++.+|||+|||+|.++..+++. +.+++|+|+|+.|++.+++. +++++.++ +++ + ++++++||
T Consensus 5 ~~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-~~~~~~~d------~~~~l~~~~~~sfD 77 (194)
T TIGR02081 5 ESILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-GVNVIQGD------LDEGLEAFPDKSFD 77 (194)
T ss_pred HHHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-CCeEEEEE------hhhcccccCCCCcC
Confidence 445555677789999999999999998764 56889999999999988753 56776654 332 2 25678999
Q ss_pred eEEEccccccC-ChhHHHHHHHHhhc
Q 037961 102 LVTIASALHWF-DLPQFYKQVKWVLK 126 (262)
Q Consensus 102 ~V~~~~~~~~~-d~~~~l~~~~r~Lk 126 (262)
+|+++.++||+ |+..+++++.|+++
T Consensus 78 ~Vi~~~~l~~~~d~~~~l~e~~r~~~ 103 (194)
T TIGR02081 78 YVILSQTLQATRNPEEILDEMLRVGR 103 (194)
T ss_pred EEEEhhHhHcCcCHHHHHHHHHHhCC
Confidence 99999999999 99999999988877
No 58
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.50 E-value=4.3e-13 Score=100.35 Aligned_cols=107 Identities=22% Similarity=0.286 Sum_probs=79.7
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhh
Q 037961 21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITEL 90 (262)
Q Consensus 21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~ 90 (262)
+++...+.... +++.+|||+|||+|..+..+++. ..+|+++|+|+.+++.+++. .++.+..++ +
T Consensus 5 ~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~------~ 78 (124)
T TIGR02469 5 REVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGD------A 78 (124)
T ss_pred HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecc------c
Confidence 44455555554 35679999999999999999986 36899999999999988742 456666554 2
Q ss_pred hh-ccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 91 EQ-NVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 91 ~~-~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
.. .+...++||.|++..+.+. ..++++++.++|+ |||+|++-.
T Consensus 79 ~~~~~~~~~~~D~v~~~~~~~~--~~~~l~~~~~~Lk-~gG~li~~~ 122 (124)
T TIGR02469 79 PEALEDSLPEPDRVFIGGSGGL--LQEILEAIWRRLR-PGGRIVLNA 122 (124)
T ss_pred cccChhhcCCCCEEEECCcchh--HHHHHHHHHHHcC-CCCEEEEEe
Confidence 21 1122358999999776543 4589999999999 999999843
No 59
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.49 E-value=2.5e-13 Score=108.68 Aligned_cols=96 Identities=25% Similarity=0.270 Sum_probs=74.0
Q ss_pred CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~ 107 (262)
+...+||+|||.|..+..|+++|.+|+++|.|+..++.+++. -.++.... |+++..++ +.||+|++..
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~------Dl~~~~~~-~~yD~I~st~ 102 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVA------DLNDFDFP-EEYDFIVSTV 102 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-------BGCCBS-T-TTEEEEEEES
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEe------cchhcccc-CCcCEEEEEE
Confidence 456889999999999999999999999999999999877642 23555554 45555544 6799999999
Q ss_pred ccccCChhH---HHHHHHHhhcCCCeEEEEEe
Q 037961 108 ALHWFDLPQ---FYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 108 ~~~~~d~~~---~l~~~~r~Lk~pgG~l~i~~ 136 (262)
++++++++. .++.+...++ |||.+++..
T Consensus 103 v~~fL~~~~~~~i~~~m~~~~~-pGG~~li~~ 133 (192)
T PF03848_consen 103 VFMFLQRELRPQIIENMKAATK-PGGYNLIVT 133 (192)
T ss_dssp SGGGS-GGGHHHHHHHHHHTEE-EEEEEEEEE
T ss_pred EeccCCHHHHHHHHHHHHhhcC-CcEEEEEEE
Confidence 999996554 7899999999 999988744
No 60
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.48 E-value=2.6e-13 Score=110.07 Aligned_cols=98 Identities=21% Similarity=0.229 Sum_probs=79.3
Q ss_pred CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhc---cCCCCcee
Q 037961 33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQN---VATQSSVD 101 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~---~~~~~~~D 101 (262)
....+||+|||+|.++..++.. ..+++|+|+++.|++.|++ ..++.++.++ +..+ .++++++|
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d------~~~~~~~~~~~~~~d 89 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGD------ANELLDKFFPDGSLS 89 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccC------HHHHHHhhCCCCcee
Confidence 4568999999999999999986 4689999999999998864 2578888776 3322 14567899
Q ss_pred eEEEccccccCCh---------hHHHHHHHHhhcCCCeEEEEEec
Q 037961 102 LVTIASALHWFDL---------PQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 102 ~V~~~~~~~~~d~---------~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.|++++..+|... +.+++++.++|| |||.|++.+.
T Consensus 90 ~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~Lk-pgG~l~~~td 133 (194)
T TIGR00091 90 KVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLK-KGGVIHFKTD 133 (194)
T ss_pred EEEEECCCcCCCCCccccccCCHHHHHHHHHHhC-CCCEEEEEeC
Confidence 9999998888732 468999999999 9999988553
No 61
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.48 E-value=3.5e-13 Score=106.61 Aligned_cols=96 Identities=15% Similarity=0.141 Sum_probs=81.1
Q ss_pred HHHHhhCCCCCeEEEEcCcccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceee
Q 037961 25 KLIASKTPKRNLAWDVGTRSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDL 102 (262)
Q Consensus 25 ~~l~~~~~~~~~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~ 102 (262)
+.|.+.++++.+|||+|||.|.+...|.. ++.+..|+|++++.+..+.++ ++.++++| .. +. ..+++++||.
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-Gv~Viq~Dld~---gL--~~f~d~sFD~ 78 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-GVSVIQGDLDE---GL--ADFPDQSFDY 78 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-CCCEEECCHHH---hH--hhCCCCCccE
Confidence 45666778999999999999999999987 588999999999999888765 78888887 21 11 1268999999
Q ss_pred EEEccccccC-ChhHHHHHHHHhhc
Q 037961 103 VTIASALHWF-DLPQFYKQVKWVLK 126 (262)
Q Consensus 103 V~~~~~~~~~-d~~~~l~~~~r~Lk 126 (262)
|+.+++++.+ +|+++++|+.|+-|
T Consensus 79 VIlsqtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 79 VILSQTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred EehHhHHHhHhHHHHHHHHHHHhcC
Confidence 9999999999 99999999988855
No 62
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.47 E-value=6.6e-13 Score=117.18 Aligned_cols=118 Identities=13% Similarity=0.153 Sum_probs=85.5
Q ss_pred HHHHhhCCC--CCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC---------CCceEEeCCCCchhhhh
Q 037961 25 KLIASKTPK--RNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL---------PNIRYQLTPTMSITELE 91 (262)
Q Consensus 25 ~~l~~~~~~--~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~~ 91 (262)
+.++++++. ..+|||+|||+|.++..+++. ..+|+++|+|+.+++.++++ .++++..++ ..
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D------~l 291 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINN------AL 291 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcc------cc
Confidence 345556543 358999999999999999887 46899999999999999853 134555554 21
Q ss_pred hccCCCCceeeEEEccccccCC------hhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhh
Q 037961 92 QNVATQSSVDLVTIASALHWFD------LPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVF 150 (262)
Q Consensus 92 ~~~~~~~~~D~V~~~~~~~~~d------~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~ 150 (262)
. .++.++||+|+|+..+|... ..++++++.++|+ |||.|++.......+...+.+++
T Consensus 292 ~-~~~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lk-pGG~L~iV~nr~l~y~~~L~~~f 354 (378)
T PRK15001 292 S-GVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLK-INGELYIVANRHLDYFHKLKKIF 354 (378)
T ss_pred c-cCCCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcc-cCCEEEEEEecCcCHHHHHHHHc
Confidence 1 12456899999999998652 3458899999999 99999987655433334444443
No 63
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.46 E-value=7.4e-13 Score=116.00 Aligned_cols=108 Identities=14% Similarity=0.124 Sum_probs=81.2
Q ss_pred CCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC---C--CceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961 34 RNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL---P--NIRYQLTPTMSITELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~ 106 (262)
..+|||+|||+|.++..+++.+ .+|+++|+|+.|++.+++. . ...+...| ... ..+++||+|+++
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D------~~~--~~~~~fDlIvsN 268 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASN------VFS--DIKGRFDMIISN 268 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcc------ccc--ccCCCccEEEEC
Confidence 4579999999999999999874 4899999999999999752 1 23344433 211 125789999999
Q ss_pred cccccC------ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhh
Q 037961 107 SALHWF------DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVF 150 (262)
Q Consensus 107 ~~~~~~------d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~ 150 (262)
..+|+. ....+++++.+.|| |||.|.+.......+.+.+++.+
T Consensus 269 PPFH~g~~~~~~~~~~~i~~a~~~Lk-pgG~L~iVan~~l~y~~~l~~~F 317 (342)
T PRK09489 269 PPFHDGIQTSLDAAQTLIRGAVRHLN-SGGELRIVANAFLPYPDLLDETF 317 (342)
T ss_pred CCccCCccccHHHHHHHHHHHHHhcC-cCCEEEEEEeCCCChHHHHHHHc
Confidence 999973 24679999999999 99999987766544444444444
No 64
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.46 E-value=7e-13 Score=109.78 Aligned_cols=98 Identities=27% Similarity=0.319 Sum_probs=80.8
Q ss_pred CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----C-CceEEeCCCCchhhhhhccCC-CCceeeEEE
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----P-NIRYQLTPTMSITELEQNVAT-QSSVDLVTI 105 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~-~~~~~~~~~~~~~~~~~~~~~-~~~~D~V~~ 105 (262)
++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++. . ++.+...+ +.+++.. +++||+|++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d------~~~~~~~~~~~~D~i~~ 118 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTS------VEDLAEKGAKSFDVVTC 118 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCC------HHHhhcCCCCCccEEEe
Confidence 367899999999999999988888999999999999988752 1 35665543 4444332 478999999
Q ss_pred ccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 106 ASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 106 ~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
...+|++ ++..+++++.++|+ |||.+++...
T Consensus 119 ~~~l~~~~~~~~~l~~~~~~L~-~gG~l~i~~~ 150 (224)
T TIGR01983 119 MEVLEHVPDPQAFIRACAQLLK-PGGILFFSTI 150 (224)
T ss_pred hhHHHhCCCHHHHHHHHHHhcC-CCcEEEEEec
Confidence 9999999 99999999999999 9999887544
No 65
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.46 E-value=9.2e-13 Score=105.45 Aligned_cols=97 Identities=16% Similarity=0.239 Sum_probs=76.5
Q ss_pred CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~ 107 (262)
++.+|||+|||+|.++..++..+.+|+++|+|+.|++.++++ .++++..++ +... ..++||+|+++.
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d------~~~~--~~~~fD~Vi~n~ 90 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTD------LFKG--VRGKFDVILFNP 90 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEcc------cccc--cCCcccEEEECC
Confidence 456799999999999999999888999999999999988763 345556554 2222 245899999998
Q ss_pred ccccCC----------------------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 108 ALHWFD----------------------LPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 108 ~~~~~d----------------------~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
.+|..+ ...+++++.++|+ |||++++....
T Consensus 91 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk-~gG~~~~~~~~ 142 (179)
T TIGR00537 91 PYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILK-EGGRVQLIQSS 142 (179)
T ss_pred CCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhC-CCCEEEEEEec
Confidence 887552 2457999999999 99999885543
No 66
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.45 E-value=5.8e-13 Score=110.05 Aligned_cols=93 Identities=18% Similarity=0.206 Sum_probs=75.4
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVT 104 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~ 104 (262)
.+..+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++. .++.+..++ +.+.+ ++||+|+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d------~~~~~---~~fD~ii 124 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVND------LLSLC---GEFDIVV 124 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECC------hhhCC---CCcCEEE
Confidence 3578899999999999999999889999999999999998753 256677654 44432 7899999
Q ss_pred EccccccCC---hhHHHHHHHHhhcCCCeEEEE
Q 037961 105 IASALHWFD---LPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 105 ~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+...++++. ...+++++.++++ +++.+.+
T Consensus 125 ~~~~l~~~~~~~~~~~l~~i~~~~~-~~~~i~~ 156 (219)
T TIGR02021 125 CMDVLIHYPASDMAKALGHLASLTK-ERVIFTF 156 (219)
T ss_pred EhhHHHhCCHHHHHHHHHHHHHHhC-CCEEEEE
Confidence 999988773 4568999999998 7766654
No 67
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.45 E-value=2.1e-12 Score=107.69 Aligned_cols=107 Identities=23% Similarity=0.291 Sum_probs=84.1
Q ss_pred HHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhcc-C
Q 037961 24 FKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNV-A 95 (262)
Q Consensus 24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~-~ 95 (262)
++++.... .++..|||+|||+|.++..+++.+.+++++|+++.+++.+++. ..+.+...+ +...+ .
T Consensus 37 ~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~~~ 110 (233)
T PRK05134 37 LNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTT------AEELAAE 110 (233)
T ss_pred HHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecC------HHHhhhh
Confidence 34444443 3577899999999999999999899999999999999988752 234555443 33332 2
Q ss_pred CCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 96 TQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 96 ~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
..++||+|++..++++. ++..+++.+.++|+ |||.+++...
T Consensus 111 ~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~-~gG~l~v~~~ 152 (233)
T PRK05134 111 HPGQFDVVTCMEMLEHVPDPASFVRACAKLVK-PGGLVFFSTL 152 (233)
T ss_pred cCCCccEEEEhhHhhccCCHHHHHHHHHHHcC-CCcEEEEEec
Confidence 45789999999999999 89999999999999 9999987543
No 68
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.45 E-value=1.7e-13 Score=110.01 Aligned_cols=128 Identities=20% Similarity=0.222 Sum_probs=97.4
Q ss_pred hhhHHHHHHHHh-----hCCCChHHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCC
Q 037961 3 ELFIKQANLYAV-----ARPNYPKELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPN 76 (262)
Q Consensus 3 ~~F~~~a~~Y~~-----~rp~yp~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~ 76 (262)
..|+..|+.++. ---+.|..+.+.|.... ++..++||+|||||..+..|.....+++|+|+|.+|++.|.+...
T Consensus 89 ~LFD~~Ae~Fd~~LVdkL~Y~vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~ 168 (287)
T COG4976 89 TLFDQYAERFDHILVDKLGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGL 168 (287)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccc
Confidence 467777777643 22234666666665544 357899999999999999999999999999999999999986532
Q ss_pred ceEEeCCCCchhhhhh-cc-CCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 77 IRYQLTPTMSITELEQ-NV-ATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 77 ~~~~~~~~~~~~~~~~-~~-~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
...+. .+++.. +. ..+..||+|++.-++.++ +.+.++.-+...|+ |||.|++..
T Consensus 169 YD~L~-----~Aea~~Fl~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~-~gGlfaFSv 225 (287)
T COG4976 169 YDTLY-----VAEAVLFLEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLA-PGGLFAFSV 225 (287)
T ss_pred hHHHH-----HHHHHHHhhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcC-CCceEEEEe
Confidence 21111 123331 22 357789999999999999 99999999999999 999999844
No 69
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.44 E-value=5.5e-13 Score=112.33 Aligned_cols=149 Identities=17% Similarity=0.122 Sum_probs=100.2
Q ss_pred HHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHh---cC--CCceEEeCCCCchhhhhhccC
Q 037961 24 FKLIASKTP--KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAI---KL--PNIRYQLTPTMSITELEQNVA 95 (262)
Q Consensus 24 ~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~---~~--~~~~~~~~~~~~~~~~~~~~~ 95 (262)
.+++..+++ .+.+|||||||.|.++..++..|+ .|+|+|+++-...+.. +. ......... -.+++++.
T Consensus 104 W~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp----lgvE~Lp~ 179 (315)
T PF08003_consen 104 WDRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP----LGVEDLPN 179 (315)
T ss_pred HHHHHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC----cchhhccc
Confidence 455666664 678999999999999999999887 5999999998876643 21 122222111 13566765
Q ss_pred CCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec-CCCcccHHHHHhhcc-cccCCCCC-CccccchhHHh
Q 037961 96 TQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY-TMPEINESVGAVFKP-FDTIDCNP-FWAPQRKLVDK 171 (262)
Q Consensus 96 ~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~-~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~ 171 (262)
.++||+|+|...++|. +|-..+.++.+.|+ |||.|++=+. ....- -..++.. -+. .+.. |+-|...-+.+
T Consensus 180 -~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~-~gGeLvLETlvi~g~~---~~~L~P~~rYa-~m~nv~FiPs~~~L~~ 253 (315)
T PF08003_consen 180 -LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLR-PGGELVLETLVIDGDE---NTVLVPEDRYA-KMRNVWFIPSVAALKN 253 (315)
T ss_pred -cCCcCEEEEeeehhccCCHHHHHHHHHHhhC-CCCEEEEEEeeecCCC---ceEEccCCccc-CCCceEEeCCHHHHHH
Confidence 7889999999999999 99999999999999 9999998222 11110 0111111 111 3333 33366666777
Q ss_pred cCCCCCCCCCCCC
Q 037961 172 KYMSIDFPFEPVD 184 (262)
Q Consensus 172 ~~~~~~~~f~~v~ 184 (262)
.+...+ |++|+
T Consensus 254 wl~r~g--F~~v~ 264 (315)
T PF08003_consen 254 WLERAG--FKDVR 264 (315)
T ss_pred HHHHcC--CceEE
Confidence 777777 54443
No 70
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.42 E-value=1.8e-12 Score=106.06 Aligned_cols=101 Identities=16% Similarity=0.163 Sum_probs=76.6
Q ss_pred HHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhh
Q 037961 22 ELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITE 89 (262)
Q Consensus 22 ~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~ 89 (262)
.+...+.+.+ .++.+|||+|||+|..+..+++. ..+|+++|+++.|++.|+++ .++.+..+|
T Consensus 59 ~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d------ 132 (205)
T PRK13944 59 HMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGD------ 132 (205)
T ss_pred HHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECC------
Confidence 3455555554 46689999999999999988875 36899999999999988752 236677665
Q ss_pred hhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 90 LEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 90 ~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+.......++||+|++..+++++. +++.++|+ |||.|++
T Consensus 133 ~~~~~~~~~~fD~Ii~~~~~~~~~-----~~l~~~L~-~gG~lvi 171 (205)
T PRK13944 133 GKRGLEKHAPFDAIIVTAAASTIP-----SALVRQLK-DGGVLVI 171 (205)
T ss_pred cccCCccCCCccEEEEccCcchhh-----HHHHHhcC-cCcEEEE
Confidence 333222457899999998877653 47889999 9999987
No 71
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.42 E-value=1.2e-12 Score=107.87 Aligned_cols=96 Identities=15% Similarity=-0.012 Sum_probs=75.2
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------------------CCceEEeCCCCchhhhhhc
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------------------PNIRYQLTPTMSITELEQN 93 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------------------~~~~~~~~~~~~~~~~~~~ 93 (262)
+++.+|||+|||.|..+..|+++|.+|+|+|+|+..++.+.+. .++++.++| +.++
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D------~~~l 109 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGD------FFAL 109 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECc------ccCC
Confidence 4667999999999999999999999999999999999976421 234455544 4333
Q ss_pred cC-CCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEE
Q 037961 94 VA-TQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 94 ~~-~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+. ..+.||+|+-..++|+++ ..+.++.+.++|+ |||++++
T Consensus 110 ~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~-pgG~~~l 153 (218)
T PRK13255 110 TAADLADVDAVYDRAALIALPEEMRERYVQQLAALLP-AGCRGLL 153 (218)
T ss_pred CcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcC-CCCeEEE
Confidence 22 235899999988999884 3458999999999 9997554
No 72
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.42 E-value=5.8e-13 Score=106.36 Aligned_cols=100 Identities=24% Similarity=0.260 Sum_probs=80.1
Q ss_pred CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-CCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW 111 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~ 111 (262)
....|||||||+|..+..|...|...+|+|+|+.|++.|.+. -.-.++.+| -.+-+|+.+++||.|++..+++|
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~D-----MG~GlpfrpGtFDg~ISISAvQW 124 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCD-----MGEGLPFRPGTFDGVISISAVQW 124 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeee-----cCCCCCCCCCccceEEEeeeeee
Confidence 478899999999999999999999999999999999999852 111233332 23668899999999999999999
Q ss_pred C-Chh-------H----HHHHHHHhhcCCCeEEEEEecC
Q 037961 112 F-DLP-------Q----FYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 112 ~-d~~-------~----~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
+ +.. + ++.-++.+|+ +|+..++-.|.
T Consensus 125 LcnA~~s~~~P~~Rl~~FF~tLy~~l~-rg~raV~QfYp 162 (270)
T KOG1541|consen 125 LCNADKSLHVPKKRLLRFFGTLYSCLK-RGARAVLQFYP 162 (270)
T ss_pred ecccCccccChHHHHHHHhhhhhhhhc-cCceeEEEecc
Confidence 8 422 2 6778999999 99998884443
No 73
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.41 E-value=2.3e-12 Score=105.87 Aligned_cols=102 Identities=19% Similarity=0.182 Sum_probs=77.5
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhh
Q 037961 21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITE 89 (262)
Q Consensus 21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~ 89 (262)
+.+...+.... .++.+|||+|||+|..+..+++.. .+|+++|+++.+++.++++ .++++..+|
T Consensus 62 p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd------ 135 (212)
T PRK13942 62 IHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGD------ 135 (212)
T ss_pred HHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC------
Confidence 34445555443 578899999999999999888763 5899999999999998752 467788765
Q ss_pred hhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 90 LEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 90 ~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+.....+.++||+|++..+++.+ .+.+.+.|| |||+|++
T Consensus 136 ~~~~~~~~~~fD~I~~~~~~~~~-----~~~l~~~Lk-pgG~lvi 174 (212)
T PRK13942 136 GTLGYEENAPYDRIYVTAAGPDI-----PKPLIEQLK-DGGIMVI 174 (212)
T ss_pred cccCCCcCCCcCEEEECCCcccc-----hHHHHHhhC-CCcEEEE
Confidence 33333356789999988776543 346778999 9999988
No 74
>PRK14967 putative methyltransferase; Provisional
Probab=99.41 E-value=5.4e-12 Score=104.54 Aligned_cols=116 Identities=18% Similarity=0.137 Sum_probs=81.8
Q ss_pred hCCCChHHH-HHHHHhh-CCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-----CCceEEeCCCCc
Q 037961 15 ARPNYPKEL-FKLIASK-TPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-----PNIRYQLTPTMS 86 (262)
Q Consensus 15 ~rp~yp~~~-~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~ 86 (262)
++|..-..+ .+.+... ..++.+|||+|||+|.++..++..+. +++++|+|+.+++.++++ .++.+..++
T Consensus 16 ~~p~~ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d--- 92 (223)
T PRK14967 16 YRPQEDTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGD--- 92 (223)
T ss_pred cCCCCcHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECc---
Confidence 455543333 3444332 35678999999999999999988765 999999999999988753 235555554
Q ss_pred hhhhhhccCCCCceeeEEEccccccC-C---------------------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 87 ITELEQNVATQSSVDLVTIASALHWF-D---------------------LPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 87 ~~~~~~~~~~~~~~D~V~~~~~~~~~-d---------------------~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
+... +++++||+|+++...+.. + .+.+++++.++|| |||++++....
T Consensus 93 ---~~~~-~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk-~gG~l~~~~~~ 161 (223)
T PRK14967 93 ---WARA-VEFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLA-PGGSLLLVQSE 161 (223)
T ss_pred ---hhhh-ccCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcC-CCcEEEEEEec
Confidence 3222 356789999998654432 1 3457889999999 99999875433
No 75
>PRK04266 fibrillarin; Provisional
Probab=99.41 E-value=2e-12 Score=106.88 Aligned_cols=98 Identities=17% Similarity=0.153 Sum_probs=70.7
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHH----hcCCCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFA----IKLPNIRYQLTPTMSITELEQNVATQSSVDLVTI 105 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~ 105 (262)
.++.+|||+|||+|.++..+++.. ..|+|+|+++.|++.+ ++..++..+.++.... ....++. .+||+|++
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~--~~~~~l~-~~~D~i~~ 147 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKP--ERYAHVV-EKVDVIYQ 147 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCc--chhhhcc-ccCCEEEE
Confidence 478899999999999999999874 5899999999988854 3346788887761100 0011222 46999996
Q ss_pred ccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 106 ASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
.....| ....+++++.++|| |||.|++
T Consensus 148 d~~~p~-~~~~~L~~~~r~LK-pGG~lvI 174 (226)
T PRK04266 148 DVAQPN-QAEIAIDNAEFFLK-DGGYLLL 174 (226)
T ss_pred CCCChh-HHHHHHHHHHHhcC-CCcEEEE
Confidence 533211 11346899999999 9999998
No 76
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.40 E-value=1.1e-12 Score=97.37 Aligned_cols=95 Identities=19% Similarity=0.232 Sum_probs=75.6
Q ss_pred CeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc--CCCCceeeEE
Q 037961 35 NLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV--ATQSSVDLVT 104 (262)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~D~V~ 104 (262)
.+|||+|||+|.++..+++.+ .+++|+|+++..++.++.. .++++.++| +.+.. +++++||+|+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D------~~~~~~~~~~~~~D~Iv 75 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGD------ARDLPEPLPDGKFDLIV 75 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESH------HHHHHHTCTTT-EEEEE
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECc------hhhchhhccCceeEEEE
Confidence 579999999999999999998 8999999999999998852 457778765 43433 5789999999
Q ss_pred EccccccC--C-------hhHHHHHHHHhhcCCCeEEEEEe
Q 037961 105 IASALHWF--D-------LPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 105 ~~~~~~~~--d-------~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
++..+... + ...+++++.++|| |||.++++.
T Consensus 76 ~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~-~gG~~~~~~ 115 (117)
T PF13659_consen 76 TNPPYGPRSGDKAALRRLYSRFLEAAARLLK-PGGVLVFIT 115 (117)
T ss_dssp E--STTSBTT----GGCHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ECCCCccccccchhhHHHHHHHHHHHHHHcC-CCeEEEEEe
Confidence 99888743 1 2458999999999 999999865
No 77
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.40 E-value=2.8e-12 Score=110.89 Aligned_cols=104 Identities=17% Similarity=0.148 Sum_probs=76.1
Q ss_pred HHHHHhhCCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-----CCc--eEEeCCCCchhhhhh-
Q 037961 24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-----PNI--RYQLTPTMSITELEQ- 92 (262)
Q Consensus 24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----~~~--~~~~~~~~~~~~~~~- 92 (262)
...|...++++..|||+|||+|..+..|++. +.+|+++|+|++|++.+++. +++ ..+.+| +.+
T Consensus 54 ~~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD------~~~~ 127 (301)
T TIGR03438 54 ADEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICAD------FTQP 127 (301)
T ss_pred HHHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEc------ccch
Confidence 3334445567788999999999999999887 57899999999999988642 443 445665 221
Q ss_pred ccCCC----CceeeEEEccccccCChhH---HHHHHHHhhcCCCeEEEE
Q 037961 93 NVATQ----SSVDLVTIASALHWFDLPQ---FYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 93 ~~~~~----~~~D~V~~~~~~~~~d~~~---~l~~~~r~Lk~pgG~l~i 134 (262)
.+++. +...++++..++++++++. ++++++++|+ |||.|++
T Consensus 128 ~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~-pgG~~li 175 (301)
T TIGR03438 128 LALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLG-PGGGLLI 175 (301)
T ss_pred hhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcC-CCCEEEE
Confidence 11122 2344566678899885444 7999999999 9999987
No 78
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.39 E-value=3e-12 Score=103.32 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=72.9
Q ss_pred hCCCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhc--cCCCCceeeEE
Q 037961 30 KTPKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQN--VATQSSVDLVT 104 (262)
Q Consensus 30 ~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~V~ 104 (262)
..+++.+|||+|||+|.++..++... .+|+++|+|+.+ ..+++.+..++.......+.+ .++.++||+|+
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~ 103 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVM 103 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEE
Confidence 34678899999999999999988764 369999999865 335677776651110001111 13566899999
Q ss_pred Eccccc----cC-C-------hhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961 105 IASALH----WF-D-------LPQFYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 105 ~~~~~~----~~-d-------~~~~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
+..+.| |. + .+.+++.+.++|+ |||++++..+..
T Consensus 104 ~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lk-pgG~lvi~~~~~ 149 (188)
T TIGR00438 104 SDAAPNISGYWDIDHLRSIDLVELALDIAKEVLK-PKGNFVVKVFQG 149 (188)
T ss_pred cCCCCCCCCCccccHHHHHHHHHHHHHHHHHHcc-CCCEEEEEEccC
Confidence 875432 33 3 2578999999999 999999855443
No 79
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.39 E-value=3.9e-12 Score=104.81 Aligned_cols=101 Identities=19% Similarity=0.154 Sum_probs=75.6
Q ss_pred HHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCC---eEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhh
Q 037961 23 LFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQ---HVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELE 91 (262)
Q Consensus 23 ~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~ 91 (262)
+...+...+ .++.+|||+|||+|..+..+++... +|+++|+++.+++.|+++ .++.++.++ +.
T Consensus 65 ~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d------~~ 138 (215)
T TIGR00080 65 MVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD------GT 138 (215)
T ss_pred HHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC------cc
Confidence 344554443 4778999999999999999998754 499999999999998753 467777765 22
Q ss_pred hccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961 92 QNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAW 135 (262)
Q Consensus 92 ~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~ 135 (262)
.......+||+|++..+...+ .+.+.+.|+ |||+|++-
T Consensus 139 ~~~~~~~~fD~Ii~~~~~~~~-----~~~~~~~L~-~gG~lv~~ 176 (215)
T TIGR00080 139 QGWEPLAPYDRIYVTAAGPKI-----PEALIDQLK-EGGILVMP 176 (215)
T ss_pred cCCcccCCCCEEEEcCCcccc-----cHHHHHhcC-cCcEEEEE
Confidence 222234689999987665443 456889999 99999883
No 80
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.39 E-value=1e-12 Score=112.99 Aligned_cols=104 Identities=18% Similarity=0.244 Sum_probs=77.0
Q ss_pred HHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC---CC----ceEEeCCCCchhhhhhccC
Q 037961 24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL---PN----IRYQLTPTMSITELEQNVA 95 (262)
Q Consensus 24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~----~~~~~~~~~~~~~~~~~~~ 95 (262)
.+.+.....++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.|+++ .+ +.....+ . ...
T Consensus 150 l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~------~--~~~ 221 (288)
T TIGR00406 150 LEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIY------L--EQP 221 (288)
T ss_pred HHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecc------c--ccc
Confidence 344444556778999999999999998888765 899999999999999863 11 2222221 1 122
Q ss_pred CCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 96 TQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 96 ~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
.+++||+|+++...+. ...++.++.++|| |||.|++....
T Consensus 222 ~~~~fDlVvan~~~~~--l~~ll~~~~~~Lk-pgG~li~sgi~ 261 (288)
T TIGR00406 222 IEGKADVIVANILAEV--IKELYPQFSRLVK-PGGWLILSGIL 261 (288)
T ss_pred cCCCceEEEEecCHHH--HHHHHHHHHHHcC-CCcEEEEEeCc
Confidence 4678999999865443 3568999999999 99999986654
No 81
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.37 E-value=9.3e-12 Score=100.32 Aligned_cols=110 Identities=20% Similarity=0.177 Sum_probs=80.9
Q ss_pred CCCChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC------CCceEEeCCCC
Q 037961 16 RPNYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL------PNIRYQLTPTM 85 (262)
Q Consensus 16 rp~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~ 85 (262)
+|--++.+...+...+ .++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.++++ .++++..++
T Consensus 12 ~~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d-- 89 (187)
T PRK08287 12 VPMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGE-- 89 (187)
T ss_pred CCCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecC--
Confidence 4433445555444443 477899999999999999998864 5899999999999988752 356666654
Q ss_pred chhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 86 SITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 86 ~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
+. .++ .++||+|++....+ ....+++.+.++|+ |||.+++..
T Consensus 90 ----~~-~~~-~~~~D~v~~~~~~~--~~~~~l~~~~~~Lk-~gG~lv~~~ 131 (187)
T PRK08287 90 ----AP-IEL-PGKADAIFIGGSGG--NLTAIIDWSLAHLH-PGGRLVLTF 131 (187)
T ss_pred ----ch-hhc-CcCCCEEEECCCcc--CHHHHHHHHHHhcC-CCeEEEEEE
Confidence 21 122 35799999876544 35678999999999 999998743
No 82
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.36 E-value=5.1e-12 Score=111.24 Aligned_cols=100 Identities=18% Similarity=0.235 Sum_probs=81.9
Q ss_pred CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhc--cCCCCceee
Q 037961 33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQN--VATQSSVDL 102 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~ 102 (262)
.+..+||||||+|.++..++.. ...++|+|+++.|++.+.+ ..++.++.+| +..+ .++++++|.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~D------A~~ll~~~~~~s~D~ 195 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYD------ARLLLELLPSNSVEK 195 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC------HHHhhhhCCCCceeE
Confidence 4568999999999999999987 4689999999999988763 3578888776 3222 357899999
Q ss_pred EEEccccccC-Ch------hHHHHHHHHhhcCCCeEEEEEecCC
Q 037961 103 VTIASALHWF-DL------PQFYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 103 V~~~~~~~~~-d~------~~~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
|++++...|. .+ ..+++++.|+|+ |||.+.+.+...
T Consensus 196 I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLk-pGG~l~l~TD~~ 238 (390)
T PRK14121 196 IFVHFPVPWDKKPHRRVISEDFLNEALRVLK-PGGTLELRTDSE 238 (390)
T ss_pred EEEeCCCCccccchhhccHHHHHHHHHHHcC-CCcEEEEEEECH
Confidence 9999888887 33 579999999999 999999966544
No 83
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.36 E-value=2.3e-12 Score=108.60 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=75.4
Q ss_pred HHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC---CCceEEeCCCCchhhhhhccCCC
Q 037961 22 ELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL---PNIRYQLTPTMSITELEQNVATQ 97 (262)
Q Consensus 22 ~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~ 97 (262)
..++.+.....++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|+++ .++. .. ..++..+
T Consensus 108 ~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~---~~-------~~~~~~~ 177 (250)
T PRK00517 108 LCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVE---LN-------VYLPQGD 177 (250)
T ss_pred HHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCC---ce-------EEEccCC
Confidence 34555655566888999999999999998888776 499999999999998864 2221 00 0011122
Q ss_pred CceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 98 SSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 98 ~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
.+||+|+++...+. ...+++++.++|| |||.+++....
T Consensus 178 ~~fD~Vvani~~~~--~~~l~~~~~~~Lk-pgG~lilsgi~ 215 (250)
T PRK00517 178 LKADVIVANILANP--LLELAPDLARLLK-PGGRLILSGIL 215 (250)
T ss_pred CCcCEEEEcCcHHH--HHHHHHHHHHhcC-CCcEEEEEECc
Confidence 37999998754332 3568899999999 99999986543
No 84
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.36 E-value=1.1e-11 Score=108.59 Aligned_cols=114 Identities=15% Similarity=0.053 Sum_probs=86.6
Q ss_pred HHHHHHHHhh--CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhh
Q 037961 21 KELFKLIASK--TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQ 92 (262)
Q Consensus 21 ~~~~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~ 92 (262)
+.+...+.+. .+++..|||.|||+|.++..++..+.+++|+|+++.|++.++++ .++.+..+ |+.+
T Consensus 168 ~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~------D~~~ 241 (329)
T TIGR01177 168 PKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRG------DATK 241 (329)
T ss_pred HHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEec------chhc
Confidence 4455555443 35778999999999999998888899999999999999988753 34555554 4666
Q ss_pred ccCCCCceeeEEEcccccc--------C-C-hhHHHHHHHHhhcCCCeEEEEEecCCCc
Q 037961 93 NVATQSSVDLVTIASALHW--------F-D-LPQFYKQVKWVLKKPSGVIAAWTYTMPE 141 (262)
Q Consensus 93 ~~~~~~~~D~V~~~~~~~~--------~-d-~~~~l~~~~r~Lk~pgG~l~i~~~~~~~ 141 (262)
+++++++||+|+++..+.- . + ...+++++.++|| |||.++++......
T Consensus 242 l~~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk-~gG~lv~~~~~~~~ 299 (329)
T TIGR01177 242 LPLSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLK-SEGWIVYAVPTRID 299 (329)
T ss_pred CCcccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHcc-CCcEEEEEEcCCCC
Confidence 7767789999999755421 1 1 3669999999999 99999987765433
No 85
>PLN03075 nicotianamine synthase; Provisional
Probab=99.35 E-value=1.2e-11 Score=105.24 Aligned_cols=94 Identities=15% Similarity=0.127 Sum_probs=72.8
Q ss_pred CCCeEEEEcCcccHhHHH-HH-hh--CCeEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhccCCCCce
Q 037961 33 KRNLAWDVGTRSGQAAAS-LA-QI--YQHVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQNVATQSSV 100 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~-l~-~~--~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (262)
++.+|+|||||+|.++.. ++ .. ..+++++|+++++++.|++. .++.|..+| +.+.....+.|
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~D------a~~~~~~l~~F 196 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTAD------VMDVTESLKEY 196 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECc------hhhcccccCCc
Confidence 668899999998855444 33 23 45799999999999999863 358888765 33332234689
Q ss_pred eeEEEccccccC---ChhHHHHHHHHhhcCCCeEEEE
Q 037961 101 DLVTIASALHWF---DLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 101 D~V~~~~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
|+|++. ++|.+ ++.++++.+.+.|+ |||.|++
T Consensus 197 DlVF~~-ALi~~dk~~k~~vL~~l~~~Lk-PGG~Lvl 231 (296)
T PLN03075 197 DVVFLA-ALVGMDKEEKVKVIEHLGKHMA-PGALLML 231 (296)
T ss_pred CEEEEe-cccccccccHHHHHHHHHHhcC-CCcEEEE
Confidence 999999 77665 67779999999999 9999998
No 86
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.34 E-value=1.2e-11 Score=101.72 Aligned_cols=104 Identities=16% Similarity=0.118 Sum_probs=77.7
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhh
Q 037961 21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQ 92 (262)
Q Consensus 21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~ 92 (262)
+.+...+.... .++.+|||+|||+|..+..++..+.+++++|+++.+++.++++ .++++..++ +..
T Consensus 64 p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d------~~~ 137 (212)
T PRK00312 64 PYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGD------GWK 137 (212)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECC------ccc
Confidence 34445555443 4678999999999999998888777999999999999988752 357777765 212
Q ss_pred ccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 93 NVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 93 ~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
...+.++||+|++..+++++ .+.+.+.|+ |||.+++..
T Consensus 138 ~~~~~~~fD~I~~~~~~~~~-----~~~l~~~L~-~gG~lv~~~ 175 (212)
T PRK00312 138 GWPAYAPFDRILVTAAAPEI-----PRALLEQLK-EGGILVAPV 175 (212)
T ss_pred CCCcCCCcCEEEEccCchhh-----hHHHHHhcC-CCcEEEEEE
Confidence 11134789999998877655 356789999 999998833
No 87
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.34 E-value=3.2e-12 Score=100.41 Aligned_cols=74 Identities=22% Similarity=0.210 Sum_probs=63.7
Q ss_pred EEEcCCHHHHHHHhcC---------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCC
Q 037961 59 IATDTSPKQLKFAIKL---------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKP 128 (262)
Q Consensus 59 ~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~p 128 (262)
+|+|+|++|++.|++. .+++++++ |++++|+++++||+|++..++||+ |+.+++++++|+|| |
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~------d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLk-p 73 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEG------DAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLK-P 73 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEe------chhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcC-c
Confidence 4899999999998642 24677765 577888889999999999999998 99999999999999 9
Q ss_pred CeEEEEEecCC
Q 037961 129 SGVIAAWTYTM 139 (262)
Q Consensus 129 gG~l~i~~~~~ 139 (262)
||.|++..+..
T Consensus 74 GG~l~i~d~~~ 84 (160)
T PLN02232 74 GSRVSILDFNK 84 (160)
T ss_pred CeEEEEEECCC
Confidence 99999976654
No 88
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.34 E-value=1e-11 Score=103.15 Aligned_cols=91 Identities=20% Similarity=0.222 Sum_probs=70.3
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVT 104 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~ 104 (262)
.++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|++. .++.+..++ + +..+++||+|+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d------~---~~~~~~fD~v~ 132 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD------L---ESLLGRFDTVV 132 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC------c---hhccCCcCEEE
Confidence 4567899999999999999999989999999999999999863 246666554 2 12357899999
Q ss_pred EccccccC-C--hhHHHHHHHHhhcCCCeEE
Q 037961 105 IASALHWF-D--LPQFYKQVKWVLKKPSGVI 132 (262)
Q Consensus 105 ~~~~~~~~-d--~~~~l~~~~r~Lk~pgG~l 132 (262)
+..++|++ + ...+++++.++++ +++.+
T Consensus 133 ~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i 162 (230)
T PRK07580 133 CLDVLIHYPQEDAARMLAHLASLTR-GSLIF 162 (230)
T ss_pred EcchhhcCCHHHHHHHHHHHHhhcC-CeEEE
Confidence 99999776 3 3457788888766 44443
No 89
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3e-12 Score=108.57 Aligned_cols=108 Identities=19% Similarity=0.216 Sum_probs=78.5
Q ss_pred HHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCe-EEEEcCCHHHHHHHhcC---CCceEEeCCCCchhhhhhccCCCCc
Q 037961 24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQH-VIATDTSPKQLKFAIKL---PNIRYQLTPTMSITELEQNVATQSS 99 (262)
Q Consensus 24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (262)
+++|..+..++.+|||+|||+|.++...+..|+. ++|+|++|..++.++.+ .++.-.... ........ ...++
T Consensus 153 L~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~--~~~~~~~~-~~~~~ 229 (300)
T COG2264 153 LEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQA--KGFLLLEV-PENGP 229 (300)
T ss_pred HHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhc--ccccchhh-cccCc
Confidence 5666667779999999999999999999999875 99999999999999864 333310000 00011111 23469
Q ss_pred eeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 100 VDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 100 ~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
||+|++|--.+ -...+..++.+.|| |||++++.+.
T Consensus 230 ~DvIVANILA~--vl~~La~~~~~~lk-pgg~lIlSGI 264 (300)
T COG2264 230 FDVIVANILAE--VLVELAPDIKRLLK-PGGRLILSGI 264 (300)
T ss_pred ccEEEehhhHH--HHHHHHHHHHHHcC-CCceEEEEee
Confidence 99999985322 12358899999999 9999999664
No 90
>PHA03411 putative methyltransferase; Provisional
Probab=99.33 E-value=2.9e-11 Score=101.45 Aligned_cols=128 Identities=13% Similarity=0.142 Sum_probs=89.7
Q ss_pred hHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-CCceEEeCCCCchhhhhhccCC
Q 037961 20 PKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-PNIRYQLTPTMSITELEQNVAT 96 (262)
Q Consensus 20 p~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~ 96 (262)
|+.+...+........+|||+|||+|.++..++.+ +.+|+++|+++.|++.+++. ++++++.+| +..+. .
T Consensus 51 P~~i~~~f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D------~~e~~-~ 123 (279)
T PHA03411 51 PEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSD------VFEFE-S 123 (279)
T ss_pred CHHHHHHHHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECc------hhhhc-c
Confidence 66666443322234568999999999999988775 46999999999999999864 678888765 33333 3
Q ss_pred CCceeeEEEccccccCC---------------------hhHHHHHHHHhhcCCCeEEEEEecCCCcc-----cHHHHHhh
Q 037961 97 QSSVDLVTIASALHWFD---------------------LPQFYKQVKWVLKKPSGVIAAWTYTMPEI-----NESVGAVF 150 (262)
Q Consensus 97 ~~~~D~V~~~~~~~~~d---------------------~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~-----~~~~~~~~ 150 (262)
..+||+|+++..+++.. ..+.+.....+|+ |+|.+.+...+.+.+ ..+++++.
T Consensus 124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~-p~G~~~~~yss~~~y~~sl~~~~y~~~l 202 (279)
T PHA03411 124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIV-PTGSAGFAYSGRPYYDGTMKSNKYLKWS 202 (279)
T ss_pred cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheec-CCceEEEEEeccccccccCCHHHHHHHH
Confidence 46899999999998752 1345677788899 999766532222222 35666776
Q ss_pred ccccc
Q 037961 151 KPFDT 155 (262)
Q Consensus 151 ~~~~~ 155 (262)
.+...
T Consensus 203 ~~~g~ 207 (279)
T PHA03411 203 KQTGL 207 (279)
T ss_pred HhcCc
Confidence 66543
No 91
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.32 E-value=1.9e-11 Score=105.78 Aligned_cols=92 Identities=21% Similarity=0.168 Sum_probs=67.9
Q ss_pred CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCC-----------CceEEeCCCCchhhhhhccCCCCcee
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLP-----------NIRYQLTPTMSITELEQNVATQSSVD 101 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~D 101 (262)
++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.++++. ++.+...| ++++ +++||
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~D------l~~l---~~~fD 214 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEAND------LESL---SGKYD 214 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcc------hhhc---CCCcC
Confidence 4678999999999999999999999999999999999987641 23444433 3332 57899
Q ss_pred eEEEccccccCChh---HHHHHHHHhhcCCCeEEEEE
Q 037961 102 LVTIASALHWFDLP---QFYKQVKWVLKKPSGVIAAW 135 (262)
Q Consensus 102 ~V~~~~~~~~~d~~---~~l~~~~r~Lk~pgG~l~i~ 135 (262)
+|+|..+++|+..+ .+++.+.+ +. +||.++.+
T Consensus 215 ~Vv~~~vL~H~p~~~~~~ll~~l~~-l~-~g~liIs~ 249 (315)
T PLN02585 215 TVTCLDVLIHYPQDKADGMIAHLAS-LA-EKRLIISF 249 (315)
T ss_pred EEEEcCEEEecCHHHHHHHHHHHHh-hc-CCEEEEEe
Confidence 99999998777322 35566654 45 56665544
No 92
>PTZ00146 fibrillarin; Provisional
Probab=99.32 E-value=2.1e-11 Score=103.34 Aligned_cols=117 Identities=19% Similarity=0.147 Sum_probs=82.3
Q ss_pred HHhhCCCChHHHHHHHHhh-----CCCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHH----HHHHHhcCCCceE
Q 037961 12 YAVARPNYPKELFKLIASK-----TPKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPK----QLKFAIKLPNIRY 79 (262)
Q Consensus 12 Y~~~rp~yp~~~~~~l~~~-----~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~----~~~~a~~~~~~~~ 79 (262)
|..+-|.. .+|...|+.- +.++.+|||+|||+|.++..++... ..|+++|+++. |++.++..+++..
T Consensus 107 yR~w~p~r-SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~ 185 (293)
T PTZ00146 107 YRVWNPFR-SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVP 185 (293)
T ss_pred eeeeCCcc-cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEE
Confidence 55554533 5666555433 2577899999999999999999873 47999999986 5566666678888
Q ss_pred EeCCCCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 80 QLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+..|.. +........++||+|++..+..+ +...++.++.++|| |||.|+|
T Consensus 186 I~~Da~---~p~~y~~~~~~vDvV~~Dva~pd-q~~il~~na~r~LK-pGG~~vI 235 (293)
T PTZ00146 186 IIEDAR---YPQKYRMLVPMVDVIFADVAQPD-QARIVALNAQYFLK-NGGHFII 235 (293)
T ss_pred EECCcc---ChhhhhcccCCCCEEEEeCCCcc-hHHHHHHHHHHhcc-CCCEEEE
Confidence 887610 01112223457999999875211 33356778999999 9999998
No 93
>PRK00811 spermidine synthase; Provisional
Probab=99.31 E-value=3.3e-11 Score=103.25 Aligned_cols=100 Identities=16% Similarity=0.244 Sum_probs=76.9
Q ss_pred hCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-----------CCceEEeCCCCchhhhhh-ccC
Q 037961 30 KTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-----------PNIRYQLTPTMSITELEQ-NVA 95 (262)
Q Consensus 30 ~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~~~~~~~~~~-~~~ 95 (262)
..+...+||++|||+|..++.++++ ..+|+++|+++.+++.|++. ++++++.+| +.. +.-
T Consensus 73 ~~~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~D------a~~~l~~ 146 (283)
T PRK00811 73 AHPNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGD------GIKFVAE 146 (283)
T ss_pred hCCCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECc------hHHHHhh
Confidence 3456778999999999999999886 35899999999999999862 356666665 322 222
Q ss_pred CCCceeeEEEccccccCC-----hhHHHHHHHHhhcCCCeEEEEEe
Q 037961 96 TQSSVDLVTIASALHWFD-----LPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 96 ~~~~~D~V~~~~~~~~~d-----~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
..++||+|++...-++.. ...+++.+.+.|+ |||+++++.
T Consensus 147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~-~gGvlv~~~ 191 (283)
T PRK00811 147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALK-EDGIFVAQS 191 (283)
T ss_pred CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEEeC
Confidence 467899999976555432 2568899999999 999999864
No 94
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.30 E-value=3.2e-11 Score=101.45 Aligned_cols=107 Identities=25% Similarity=0.239 Sum_probs=80.3
Q ss_pred HHHHHHHHhhCC-CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhh
Q 037961 21 KELFKLIASKTP-KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELE 91 (262)
Q Consensus 21 ~~~~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~ 91 (262)
..+++.+....+ ...+|||+|||+|..+..++.. ..+++|+|+++.+++.+++. .++.+..++ +.
T Consensus 74 ~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d------~~ 147 (251)
T TIGR03534 74 EELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSD------WF 147 (251)
T ss_pred HHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECc------hh
Confidence 455666666554 4458999999999999999986 56899999999999988752 356777665 22
Q ss_pred hccCCCCceeeEEEccccccC-C--------------------------hhHHHHHHHHhhcCCCeEEEEE
Q 037961 92 QNVATQSSVDLVTIASALHWF-D--------------------------LPQFYKQVKWVLKKPSGVIAAW 135 (262)
Q Consensus 92 ~~~~~~~~~D~V~~~~~~~~~-d--------------------------~~~~l~~~~r~Lk~pgG~l~i~ 135 (262)
. ++++++||+|+++..++.. + ...+++++.++|+ |||.+++.
T Consensus 148 ~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~-~gG~~~~~ 216 (251)
T TIGR03534 148 E-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLK-PGGWLLLE 216 (251)
T ss_pred c-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcc-cCCEEEEE
Confidence 2 2356789999997665431 1 1357889999999 99999884
No 95
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.29 E-value=5.3e-11 Score=96.79 Aligned_cols=107 Identities=19% Similarity=0.191 Sum_probs=77.9
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchh
Q 037961 21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSIT 88 (262)
Q Consensus 21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~ 88 (262)
+++....+.+. .++.+|||+|||+|.++..++.. ..+|+++|+++.|++.++++ .++.+..++
T Consensus 26 ~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d----- 100 (198)
T PRK00377 26 EEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGE----- 100 (198)
T ss_pred HHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEec-----
Confidence 34433333443 47789999999999999998764 36899999999999988642 356666654
Q ss_pred hhhh-ccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 89 ELEQ-NVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 89 ~~~~-~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
+.+ ++..+++||.|++... ..+...+++++.++|+ |||.+++..
T Consensus 101 -~~~~l~~~~~~~D~V~~~~~--~~~~~~~l~~~~~~Lk-pgG~lv~~~ 145 (198)
T PRK00377 101 -APEILFTINEKFDRIFIGGG--SEKLKEIISASWEIIK-KGGRIVIDA 145 (198)
T ss_pred -hhhhHhhcCCCCCEEEECCC--cccHHHHHHHHHHHcC-CCcEEEEEe
Confidence 222 2222468999998642 2367889999999999 999998733
No 96
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.28 E-value=8.4e-11 Score=95.46 Aligned_cols=112 Identities=19% Similarity=0.256 Sum_probs=80.1
Q ss_pred CCChHHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCc
Q 037961 17 PNYPKELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMS 86 (262)
Q Consensus 17 p~yp~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~ 86 (262)
|.-+.++...+...+. ++.+|||+|||+|.++..++.. +.+|+++|+|+.|++.++++ .+++++.++
T Consensus 22 p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d--- 98 (196)
T PRK07402 22 PLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGS--- 98 (196)
T ss_pred CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECc---
Confidence 4455666555666654 6789999999999999998864 47999999999999988752 467777765
Q ss_pred hhhhhh-ccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 87 ITELEQ-NVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 87 ~~~~~~-~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
+.+ +......+|.|+.... .+...+++++.++|+ |||.+++....
T Consensus 99 ---~~~~~~~~~~~~d~v~~~~~---~~~~~~l~~~~~~Lk-pgG~li~~~~~ 144 (196)
T PRK07402 99 ---APECLAQLAPAPDRVCIEGG---RPIKEILQAVWQYLK-PGGRLVATASS 144 (196)
T ss_pred ---hHHHHhhCCCCCCEEEEECC---cCHHHHHHHHHHhcC-CCeEEEEEeec
Confidence 211 1111223566654321 256789999999999 99999986544
No 97
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.28 E-value=5.2e-11 Score=103.33 Aligned_cols=96 Identities=13% Similarity=0.108 Sum_probs=75.0
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceee
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDL 102 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 102 (262)
.+..+|||||||+|.++..+++++ .+++++|. +.+++.++++ .+++++.+| +...+++ .+|+
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d------~~~~~~~--~~D~ 218 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVD------IYKESYP--EADA 218 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecC------ccCCCCC--CCCE
Confidence 466899999999999999999874 57999998 7899888642 356777765 3322333 3699
Q ss_pred EEEccccccCCh---hHHHHHHHHhhcCCCeEEEEEec
Q 037961 103 VTIASALHWFDL---PQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 103 V~~~~~~~~~d~---~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
|++...+|..+. .+++++++++|+ |||+|++...
T Consensus 219 v~~~~~lh~~~~~~~~~il~~~~~~L~-pgG~l~i~d~ 255 (306)
T TIGR02716 219 VLFCRILYSANEQLSTIMCKKAFDAMR-SGGRLLILDM 255 (306)
T ss_pred EEeEhhhhcCChHHHHHHHHHHHHhcC-CCCEEEEEEe
Confidence 999999987633 358999999999 9999998653
No 98
>PRK14968 putative methyltransferase; Provisional
Probab=99.28 E-value=4.1e-11 Score=96.31 Aligned_cols=97 Identities=23% Similarity=0.224 Sum_probs=74.4
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CC--ceEEeCCCCchhhhhhccCCCCceeeE
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PN--IRYQLTPTMSITELEQNVATQSSVDLV 103 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~D~V 103 (262)
.++..|||+|||+|..+..++..+.+++++|+|+.+++.+++. .+ +.+..++ ..+ ++.+.+||+|
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d------~~~-~~~~~~~d~v 94 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSD------LFE-PFRGDKFDVI 94 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecc------ccc-cccccCceEE
Confidence 4667899999999999999999999999999999999988642 22 6666655 111 1244589999
Q ss_pred EEccccccC----------------------ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 104 TIASALHWF----------------------DLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 104 ~~~~~~~~~----------------------d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
+++..+... ....+++++.++|| |||.+++..
T Consensus 95 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk-~gG~~~~~~ 148 (188)
T PRK14968 95 LFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLK-PGGRILLLQ 148 (188)
T ss_pred EECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcC-CCeEEEEEE
Confidence 987665431 13457999999999 999988754
No 99
>PRK01581 speE spermidine synthase; Validated
Probab=99.27 E-value=8e-11 Score=102.45 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=83.0
Q ss_pred ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-------------CCceEEeCC
Q 037961 19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-------------PNIRYQLTP 83 (262)
Q Consensus 19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------------~~~~~~~~~ 83 (262)
|.+.+..-.+...+...+||++|||+|..++.++++. .+|++||+++.|++.|++. +++++..+|
T Consensus 136 YHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~D 215 (374)
T PRK01581 136 YHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCD 215 (374)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECc
Confidence 5566666555556677899999999999999988864 6899999999999999852 456666655
Q ss_pred CCchhhhhh-ccCCCCceeeEEEcccccc------CChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 84 TMSITELEQ-NVATQSSVDLVTIASALHW------FDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~D~V~~~~~~~~------~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
+.. +.-..++||+|++...-.. +-...+++.+.+.|+ |||+++++..
T Consensus 216 ------a~~fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~Lk-PgGV~V~Qs~ 269 (374)
T PRK01581 216 ------AKEFLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLT-EDGAFVCQSN 269 (374)
T ss_pred ------HHHHHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcC-CCcEEEEecC
Confidence 322 2234568999998843211 112558999999999 9999998653
No 100
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.26 E-value=6.7e-11 Score=84.49 Aligned_cols=93 Identities=29% Similarity=0.394 Sum_probs=75.6
Q ss_pred eEEEEcCcccHhHHHHHh-hCCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhcc-CCCCceeeEEEcc
Q 037961 36 LAWDVGTRSGQAAASLAQ-IYQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNV-ATQSSVDLVTIAS 107 (262)
Q Consensus 36 ~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~V~~~~ 107 (262)
+++|+|||+|..+..++. ...+++++|+++.+++.+++ ...+.+...+ +.+.. ...+++|+|+++.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGD------AEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcC------hhhhccccCCceEEEEEcc
Confidence 479999999999999987 56799999999999988872 2456666655 22322 2467899999999
Q ss_pred cccc-C-ChhHHHHHHHHhhcCCCeEEEEE
Q 037961 108 ALHW-F-DLPQFYKQVKWVLKKPSGVIAAW 135 (262)
Q Consensus 108 ~~~~-~-d~~~~l~~~~r~Lk~pgG~l~i~ 135 (262)
.+++ . +...+++.+.+.|+ |||.+++.
T Consensus 75 ~~~~~~~~~~~~l~~~~~~l~-~~g~~~~~ 103 (107)
T cd02440 75 PLHHLVEDLARFLEEARRLLK-PGGVLVLT 103 (107)
T ss_pred ceeehhhHHHHHHHHHHHHcC-CCCEEEEE
Confidence 9998 5 78889999999999 99999874
No 101
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.23 E-value=1.1e-11 Score=106.04 Aligned_cols=106 Identities=22% Similarity=0.235 Sum_probs=76.1
Q ss_pred HHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC---CCc--eEEeCCCCchhhhhhccCC
Q 037961 23 LFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL---PNI--RYQLTPTMSITELEQNVAT 96 (262)
Q Consensus 23 ~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~~--~~~~~~~~~~~~~~~~~~~ 96 (262)
-++.|..+..++.+|||+|||||.++...+..|+ +|+|+|++|..++.|+++ .++ .+.... .. ...
T Consensus 151 cl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~------~~--~~~ 222 (295)
T PF06325_consen 151 CLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL------SE--DLV 222 (295)
T ss_dssp HHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC------TS--CTC
T ss_pred HHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE------ec--ccc
Confidence 3666777778889999999999999999999987 699999999999999864 111 221111 11 123
Q ss_pred CCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961 97 QSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 97 ~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
.++||+|++|-..+- ....+..+.++|+ |||.|++.+.-.
T Consensus 223 ~~~~dlvvANI~~~v--L~~l~~~~~~~l~-~~G~lIlSGIl~ 262 (295)
T PF06325_consen 223 EGKFDLVVANILADV--LLELAPDIASLLK-PGGYLILSGILE 262 (295)
T ss_dssp CS-EEEEEEES-HHH--HHHHHHHCHHHEE-EEEEEEEEEEEG
T ss_pred cccCCEEEECCCHHH--HHHHHHHHHHhhC-CCCEEEEccccH
Confidence 589999999855432 2347778899999 999999966544
No 102
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.23 E-value=1.5e-10 Score=99.22 Aligned_cols=94 Identities=20% Similarity=0.140 Sum_probs=70.9
Q ss_pred CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961 33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLV 103 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V 103 (262)
+..+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|+++ .++.+..+| +.+ ++++++||+|
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D------~~~-~~~~~~fD~I 193 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSD------LFA-ALPGRKYDLI 193 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc------hhh-ccCCCCccEE
Confidence 4568999999999999999986 46999999999999998853 246777765 211 1245689999
Q ss_pred EEcccccc------C------C--------------hhHHHHHHHHhhcCCCeEEEE
Q 037961 104 TIASALHW------F------D--------------LPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 104 ~~~~~~~~------~------d--------------~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+++....- + + ...+++++.++|+ |||++++
T Consensus 194 v~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~-~gG~l~~ 249 (284)
T TIGR03533 194 VSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLN-ENGVLVV 249 (284)
T ss_pred EECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcC-CCCEEEE
Confidence 99743210 0 1 1446889999999 9999987
No 103
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=99.22 E-value=1.4e-10 Score=95.79 Aligned_cols=92 Identities=21% Similarity=0.275 Sum_probs=78.4
Q ss_pred CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF 112 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~ 112 (262)
...++||||+|.|..|..+++.+.+|+++|.|+.|....+++ +.+++..+ + +.-.+.+||+|.|.+.+--.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~k-g~~vl~~~-----~---w~~~~~~fDvIscLNvLDRc 164 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKK-GFTVLDID-----D---WQQTDFKFDVISCLNVLDRC 164 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhC-CCeEEehh-----h---hhccCCceEEEeehhhhhcc
Confidence 456799999999999999999999999999999998888764 66666443 2 22235689999999999888
Q ss_pred -ChhHHHHHHHHhhcCCCeEEEE
Q 037961 113 -DLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 113 -d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+|..+++++++.|+ |+|.+++
T Consensus 165 ~~P~~LL~~i~~~l~-p~G~lil 186 (265)
T PF05219_consen 165 DRPLTLLRDIRRALK-PNGRLIL 186 (265)
T ss_pred CCHHHHHHHHHHHhC-CCCEEEE
Confidence 89999999999999 9999987
No 104
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.22 E-value=1.3e-10 Score=103.09 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=78.0
Q ss_pred HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhc
Q 037961 21 KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQN 93 (262)
Q Consensus 21 ~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~ 93 (262)
+.+++.+....+++.+|||+|||+|..+..++.. ..+|+|+|+|+.|++.|+++ .++.+..+| +.+.
T Consensus 239 E~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gD------l~e~ 312 (423)
T PRK14966 239 EHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGS------WFDT 312 (423)
T ss_pred HHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcc------hhcc
Confidence 5667777766666678999999999999998864 57899999999999999863 256777765 2111
Q ss_pred cC-CCCceeeEEEcccccc-------------------C---C----hhHHHHHHHHhhcCCCeEEEE
Q 037961 94 VA-TQSSVDLVTIASALHW-------------------F---D----LPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 94 ~~-~~~~~D~V~~~~~~~~-------------------~---d----~~~~l~~~~r~Lk~pgG~l~i 134 (262)
.+ ..++||+|+|+....- . | ...+++.+.+.|+ |||.+++
T Consensus 313 ~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lk-pgG~lil 379 (423)
T PRK14966 313 DMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLA-EGGFLLL 379 (423)
T ss_pred ccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcC-CCcEEEE
Confidence 11 2457999999775311 0 0 1245667778999 9999876
No 105
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.22 E-value=3.3e-10 Score=93.19 Aligned_cols=111 Identities=11% Similarity=-0.052 Sum_probs=84.2
Q ss_pred hHHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------------------CCceEE
Q 037961 20 PKELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------------------PNIRYQ 80 (262)
Q Consensus 20 p~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------------------~~~~~~ 80 (262)
.+-+.+++.... +++.+||+.|||.|.-...|+.+|.+|+|+|+|+..++.+.+. .++++.
T Consensus 29 np~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 108 (226)
T PRK13256 29 NEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIY 108 (226)
T ss_pred CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEE
Confidence 344456654443 3567999999999999999999999999999999999987431 256666
Q ss_pred eCCCCchhhhhhccC---CCCceeeEEEccccccCCh---hHHHHHHHHhhcCCCeEEEEEec
Q 037961 81 LTPTMSITELEQNVA---TQSSVDLVTIASALHWFDL---PQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 81 ~~~~~~~~~~~~~~~---~~~~~D~V~~~~~~~~~d~---~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
++| +-+++. ..++||+|+-..+++.+++ .+..+.+.++|+ |||.+++.+.
T Consensus 109 ~gD------~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~-pgg~llll~~ 164 (226)
T PRK13256 109 VAD------IFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCS-NNTQILLLVM 164 (226)
T ss_pred Ecc------CcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhC-CCcEEEEEEE
Confidence 665 333321 1368999998888888843 448999999999 9999887443
No 106
>PRK04457 spermidine synthase; Provisional
Probab=99.22 E-value=1.7e-10 Score=97.71 Aligned_cols=95 Identities=13% Similarity=0.209 Sum_probs=73.2
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhh-ccCCCCcee
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQ-NVATQSSVD 101 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~D 101 (262)
++..+|||||||+|.++..++.. ..+++++|+++.+++.|++. ++++++.+| +.+ +.-..++||
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~D------a~~~l~~~~~~yD 138 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEAD------GAEYIAVHRHSTD 138 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECC------HHHHHHhCCCCCC
Confidence 45678999999999999999876 46899999999999999863 457777776 211 111246899
Q ss_pred eEEEcccccc------CChhHHHHHHHHhhcCCCeEEEE
Q 037961 102 LVTIASALHW------FDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 102 ~V~~~~~~~~------~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+|++.. ++. +....+++++.++|+ |||++++
T Consensus 139 ~I~~D~-~~~~~~~~~l~t~efl~~~~~~L~-pgGvlvi 175 (262)
T PRK04457 139 VILVDG-FDGEGIIDALCTQPFFDDCRNALS-SDGIFVV 175 (262)
T ss_pred EEEEeC-CCCCCCccccCcHHHHHHHHHhcC-CCcEEEE
Confidence 999752 221 234689999999999 9999998
No 107
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.21 E-value=8.7e-11 Score=97.21 Aligned_cols=98 Identities=20% Similarity=0.270 Sum_probs=78.4
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc--CCCCce
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI-Y-QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV--ATQSSV 100 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~ 100 (262)
+...+|||+|||+|.++..++++ . +++++||+++.|.+.|++. .++++.++| +.++. ....+|
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~D------i~~~~~~~~~~~f 116 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEAD------IKEFLKALVFASF 116 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhh------HHHhhhccccccc
Confidence 34788999999999999999987 3 7999999999999999863 567777765 33332 234579
Q ss_pred eeEEEcccccc----------------C---ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 101 DLVTIASALHW----------------F---DLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 101 D~V~~~~~~~~----------------~---d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
|+|+||..++- . +.+.+++.+.++|| |||.+++..
T Consensus 117 D~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk-~~G~l~~V~ 170 (248)
T COG4123 117 DLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLK-PGGRLAFVH 170 (248)
T ss_pred CEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHcc-CCCEEEEEe
Confidence 99999876652 1 56778999999999 999999854
No 108
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.21 E-value=1.7e-10 Score=99.92 Aligned_cols=92 Identities=21% Similarity=0.124 Sum_probs=70.0
Q ss_pred CeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961 35 NLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTI 105 (262)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~ 105 (262)
.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|+++ .++.+..+| +.+ .+++++||+|++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D------~~~-~l~~~~fDlIvs 207 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESD------LFA-ALPGRRYDLIVS 207 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECc------hhh-hCCCCCccEEEE
Confidence 68999999999999999886 46899999999999998853 247777765 221 124568999999
Q ss_pred cccc-------------ccC-------------ChhHHHHHHHHhhcCCCeEEEE
Q 037961 106 ASAL-------------HWF-------------DLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 106 ~~~~-------------~~~-------------d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+... ++- ....+++++.++|+ |||.+++
T Consensus 208 NPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~-pgG~l~~ 261 (307)
T PRK11805 208 NPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLT-EDGVLVV 261 (307)
T ss_pred CCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcC-CCCEEEE
Confidence 7422 110 01357889999999 9999988
No 109
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.20 E-value=7.5e-11 Score=93.51 Aligned_cols=94 Identities=10% Similarity=-0.027 Sum_probs=71.1
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~ 107 (262)
.++..|||+|||+|.++..+++++.+++++|+++.+++.++++ .+++++.+| +..+++++.+||.|+++.
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D------~~~~~~~~~~~d~vi~n~ 85 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGD------ALKFDLPKLQPYKVVGNL 85 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECc------hhcCCccccCCCEEEECC
Confidence 3567899999999999999999988999999999999998764 357777654 556666666799999998
Q ss_pred ccccCChhHHHHHHHHh--hcCCCeEEEE
Q 037961 108 ALHWFDLPQFYKQVKWV--LKKPSGVIAA 134 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~--Lk~pgG~l~i 134 (262)
.+|.. ...+..+.+- +. ++|.|++
T Consensus 86 Py~~~--~~~i~~~l~~~~~~-~~~~l~~ 111 (169)
T smart00650 86 PYNIS--TPILFKLLEEPPAF-RDAVLMV 111 (169)
T ss_pred CcccH--HHHHHHHHhcCCCc-ceEEEEE
Confidence 87753 2334444332 34 5777766
No 110
>PHA03412 putative methyltransferase; Provisional
Probab=99.20 E-value=2.8e-10 Score=93.53 Aligned_cols=106 Identities=8% Similarity=0.100 Sum_probs=77.6
Q ss_pred hHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh-----CCeEEEEcCCHHHHHHHhcC-CCceEEeCCCCchhhhhhc
Q 037961 20 PKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI-----YQHVIATDTSPKQLKFAIKL-PNIRYQLTPTMSITELEQN 93 (262)
Q Consensus 20 p~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~-----~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~ 93 (262)
|..+...+.-....+.+|||+|||+|.++..++.. ..+|+++|+++.+++.|+++ +++.+..+| +...
T Consensus 36 P~~iAr~~~i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D------~~~~ 109 (241)
T PHA03412 36 PIGLARDFTIDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINAD------ALTT 109 (241)
T ss_pred CHHHHHHHHHhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcc------hhcc
Confidence 56666665433334678999999999999988764 35899999999999999865 567777765 3333
Q ss_pred cCCCCceeeEEEccccccC---C----------hhHHHHHHHHhhcCCCeEEEE
Q 037961 94 VATQSSVDLVTIASALHWF---D----------LPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 94 ~~~~~~~D~V~~~~~~~~~---d----------~~~~l~~~~r~Lk~pgG~l~i 134 (262)
.+ +++||+|++|..++-. + ...+++.+.++++ ||+. ++
T Consensus 110 ~~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~-~G~~-IL 160 (241)
T PHA03412 110 EF-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIAR-QGTF-II 160 (241)
T ss_pred cc-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcC-CCEE-Ee
Confidence 32 5689999999888722 1 3347888889776 6664 44
No 111
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=4.2e-11 Score=101.13 Aligned_cols=119 Identities=17% Similarity=0.155 Sum_probs=87.6
Q ss_pred HHHhhCC--CCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccC
Q 037961 26 LIASKTP--KRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVA 95 (262)
Q Consensus 26 ~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~ 95 (262)
.|++.++ ....|||+|||.|.++..+++.. .+++.+|+|...++.++++ .+..+...+. .+ +.
T Consensus 149 lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~-----~~--~v 221 (300)
T COG2813 149 LLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNL-----YE--PV 221 (300)
T ss_pred HHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecc-----cc--cc
Confidence 4444443 33489999999999999999875 5899999999999999874 2222333331 11 12
Q ss_pred CCCceeeEEEccccccC-C-----hhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhccc
Q 037961 96 TQSSVDLVTIASALHWF-D-----LPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPF 153 (262)
Q Consensus 96 ~~~~~D~V~~~~~~~~~-d-----~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~~ 153 (262)
.+ +||+|+||..+|-= + ..++++++.+.|+ +||.|.|...+...+...+.++|..+
T Consensus 222 ~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~-~gGeL~iVan~~l~y~~~L~~~Fg~v 283 (300)
T COG2813 222 EG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLK-PGGELWIVANRHLPYEKKLKELFGNV 283 (300)
T ss_pred cc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhc-cCCEEEEEEcCCCChHHHHHHhcCCE
Confidence 33 89999999999933 2 2358999999999 99999998877766666667666543
No 112
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.16 E-value=3.8e-10 Score=96.88 Aligned_cols=106 Identities=25% Similarity=0.279 Sum_probs=76.0
Q ss_pred HHHHHHHHhhC---CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchh
Q 037961 21 KELFKLIASKT---PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSIT 88 (262)
Q Consensus 21 ~~~~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~ 88 (262)
+.+++.+.... ++..+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|+++ .++.+..++
T Consensus 99 e~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d----- 173 (284)
T TIGR00536 99 EELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSN----- 173 (284)
T ss_pred HHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECc-----
Confidence 55566655433 122689999999999999999864 5899999999999998863 237777765
Q ss_pred hhhhccCCCCceeeEEEcccc-------------ccC-------------ChhHHHHHHHHhhcCCCeEEEE
Q 037961 89 ELEQNVATQSSVDLVTIASAL-------------HWF-------------DLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 89 ~~~~~~~~~~~~D~V~~~~~~-------------~~~-------------d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+.. +++..+||+|+++... +|- ....+++++.++|+ |||.+++
T Consensus 174 -~~~-~~~~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~-~gG~l~~ 242 (284)
T TIGR00536 174 -LFE-PLAGQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLK-PNGFLVC 242 (284)
T ss_pred -hhc-cCcCCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhcc-CCCEEEE
Confidence 211 1234479999997322 111 13357889999999 9999987
No 113
>PRK03612 spermidine synthase; Provisional
Probab=99.16 E-value=5e-10 Score=103.69 Aligned_cols=111 Identities=15% Similarity=0.188 Sum_probs=81.0
Q ss_pred ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-------------CCceEEeCC
Q 037961 19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-------------PNIRYQLTP 83 (262)
Q Consensus 19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------------~~~~~~~~~ 83 (262)
|.+.+.......+++..+|||+|||+|..++.++++. .+|+++|+++++++.++++ ++++++.+|
T Consensus 283 y~e~l~~~~l~~~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~D 362 (521)
T PRK03612 283 YHEALVHPAMAASARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDD 362 (521)
T ss_pred HHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEECh
Confidence 4444433323334667889999999999999998874 6999999999999999872 456666655
Q ss_pred CCchhhhhh-ccCCCCceeeEEEccccccC-C-----hhHHHHHHHHhhcCCCeEEEEEe
Q 037961 84 TMSITELEQ-NVATQSSVDLVTIASALHWF-D-----LPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 84 ~~~~~~~~~-~~~~~~~~D~V~~~~~~~~~-d-----~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
+.. +.-.+++||+|+++..-++. + .+++++.+.+.|| |||.+++..
T Consensus 363 ------a~~~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~-pgG~lv~~~ 415 (521)
T PRK03612 363 ------AFNWLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLA-PDGLLVVQS 415 (521)
T ss_pred ------HHHHHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcC-CCeEEEEec
Confidence 332 22234689999998665543 1 2358899999999 999999854
No 114
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.15 E-value=1.6e-10 Score=100.67 Aligned_cols=105 Identities=20% Similarity=0.216 Sum_probs=71.3
Q ss_pred CCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC----------------CCceEEeCCCCchhhhhh-cc
Q 037961 33 KRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL----------------PNIRYQLTPTMSITELEQ-NV 94 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~----------------~~~~~~~~~~~~~~~~~~-~~ 94 (262)
++..|||+|||-|.-...+... -..++|+|+++..++.|+++ -...+..+|.+. ..+.. ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~-~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS-ESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC-SHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc-chhhhhcc
Confidence 7789999999988766666554 67899999999999998742 123445555222 12222 22
Q ss_pred CCCCceeeEEEccccccC-ChhH----HHHHHHHhhcCCCeEEEEEecCC
Q 037961 95 ATQSSVDLVTIASALHWF-DLPQ----FYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 95 ~~~~~~D~V~~~~~~~~~-d~~~----~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
....+||+|-|.+++|+. ..+. +++.+.+.|+ |||.|+..+...
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk-~GG~FIgT~~d~ 189 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLK-PGGYFIGTTPDS 189 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEE-EEEEEEEEEE-H
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcC-CCCEEEEEecCH
Confidence 223699999999999998 4333 8899999999 999999866543
No 115
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.15 E-value=6.7e-10 Score=94.63 Aligned_cols=98 Identities=17% Similarity=0.259 Sum_probs=73.4
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCchhhhhh-ccCCCC
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMSITELEQ-NVATQS 98 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~ 98 (262)
+.+.+||++|||+|..+..++++. .+++++|+++.+++.+++. +++++..+| +.. +.-..+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D------~~~~l~~~~~ 144 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDD------GFKFLADTEN 144 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECc------hHHHHHhCCC
Confidence 455699999999999999888764 6899999999999998863 344555444 211 211256
Q ss_pred ceeeEEEccccccC-C----hhHHHHHHHHhhcCCCeEEEEEe
Q 037961 99 SVDLVTIASALHWF-D----LPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 99 ~~D~V~~~~~~~~~-d----~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
+||+|++....++. . ...+++.+.++|+ |||++++..
T Consensus 145 ~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~-pgG~lv~~~ 186 (270)
T TIGR00417 145 TFDVIIVDSTDPVGPAETLFTKEFYELLKKALN-EDGIFVAQS 186 (270)
T ss_pred CccEEEEeCCCCCCcccchhHHHHHHHHHHHhC-CCcEEEEcC
Confidence 89999987664433 1 3568899999999 999999863
No 116
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.15 E-value=6.6e-10 Score=94.84 Aligned_cols=106 Identities=23% Similarity=0.226 Sum_probs=77.6
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhh
Q 037961 21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITEL 90 (262)
Q Consensus 21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~ 90 (262)
+.+++.+.... .+..+|||+|||+|..+..++... .+++|+|+|+.+++.++++ .++.+..++ +
T Consensus 94 e~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d------~ 167 (275)
T PRK09328 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGD------W 167 (275)
T ss_pred HHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEcc------c
Confidence 45566655333 356789999999999999999875 7899999999999998853 356777665 2
Q ss_pred hhccCCCCceeeEEEcccccc------C---------------------ChhHHHHHHHHhhcCCCeEEEE
Q 037961 91 EQNVATQSSVDLVTIASALHW------F---------------------DLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 91 ~~~~~~~~~~D~V~~~~~~~~------~---------------------d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
.. ++++++||+|+++....- + ....+++++.++|+ |||.+++
T Consensus 168 ~~-~~~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk-~gG~l~~ 236 (275)
T PRK09328 168 FE-PLPGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLK-PGGWLLL 236 (275)
T ss_pred cC-cCCCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcc-cCCEEEE
Confidence 11 123578999999754321 0 12457788889999 9999998
No 117
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.14 E-value=6.9e-10 Score=96.31 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=74.5
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhh
Q 037961 21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITE 89 (262)
Q Consensus 21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~ 89 (262)
+.+...+.... +++.+|||+|||+|.++..+++.. .+|+++|+++.|++.|++. .++.++.+|
T Consensus 66 p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD------ 139 (322)
T PRK13943 66 PSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGD------ 139 (322)
T ss_pred HHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCC------
Confidence 34444554443 467899999999999999998864 3699999999999988752 456777654
Q ss_pred hhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 90 LEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 90 ~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+.......++||+|++..+++. ....+.+.|+ |||.+++
T Consensus 140 ~~~~~~~~~~fD~Ii~~~g~~~-----ip~~~~~~Lk-pgG~Lvv 178 (322)
T PRK13943 140 GYYGVPEFAPYDVIFVTVGVDE-----VPETWFTQLK-EGGRVIV 178 (322)
T ss_pred hhhcccccCCccEEEECCchHH-----hHHHHHHhcC-CCCEEEE
Confidence 3333334467999998766543 2345778999 9999887
No 118
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.14 E-value=1.1e-09 Score=86.31 Aligned_cols=104 Identities=21% Similarity=0.264 Sum_probs=80.8
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHh--hCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhh
Q 037961 21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQ--IYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITEL 90 (262)
Q Consensus 21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~--~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~ 90 (262)
+++--..+..+ .++.+++|||||||+.+..++. ...+|+++|-++++++..+++ ++++.+.++ +
T Consensus 20 ~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~------A 93 (187)
T COG2242 20 EEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGD------A 93 (187)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEecc------c
Confidence 34444444444 4789999999999999999994 357999999999999987753 788888876 2
Q ss_pred hhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 91 EQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 91 ~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
...-....++|.|+...+ -..+.+++.+...|| |||.+++
T Consensus 94 p~~L~~~~~~daiFIGGg---~~i~~ile~~~~~l~-~ggrlV~ 133 (187)
T COG2242 94 PEALPDLPSPDAIFIGGG---GNIEEILEAAWERLK-PGGRLVA 133 (187)
T ss_pred hHhhcCCCCCCEEEECCC---CCHHHHHHHHHHHcC-cCCeEEE
Confidence 222112227999999887 467889999999999 9999998
No 119
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.12 E-value=3.5e-10 Score=90.84 Aligned_cols=110 Identities=17% Similarity=0.260 Sum_probs=79.9
Q ss_pred HHHHHHHHhhCCCCCe-EEEEcCcccHhHHHHHhhCCe--EEEEcCCHHHHHHHhc------CCC----ceEEeCCCCch
Q 037961 21 KELFKLIASKTPKRNL-AWDVGTRSGQAAASLAQIYQH--VIATDTSPKQLKFAIK------LPN----IRYQLTPTMSI 87 (262)
Q Consensus 21 ~~~~~~l~~~~~~~~~-vlDvGcG~G~~~~~l~~~~~~--v~~vD~s~~~~~~a~~------~~~----~~~~~~~~~~~ 87 (262)
+.+.+.|..++++... |||||||||+.+..+++...+ ..-.|+++..+...+. .+| +.....+
T Consensus 12 ~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~---- 87 (204)
T PF06080_consen 12 DPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSA---- 87 (204)
T ss_pred hHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCC----
Confidence 4567778888876665 999999999999999998654 4488999887643321 122 1111111
Q ss_pred hhhhhccC------CCCceeeEEEccccccC---ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 88 TELEQNVA------TQSSVDLVTIASALHWF---DLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 88 ~~~~~~~~------~~~~~D~V~~~~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
..++. ..++||.|++.+++|-+ ..+.+++.+.++|+ |||.|++|+..
T Consensus 88 ---~~w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~-~gG~L~~YGPF 143 (204)
T PF06080_consen 88 ---PPWPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLK-PGGLLFLYGPF 143 (204)
T ss_pred ---CCCccccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCC-CCCEEEEeCCc
Confidence 11222 35689999999999966 45669999999999 99999998753
No 120
>PLN02366 spermidine synthase
Probab=99.12 E-value=1.2e-09 Score=94.42 Aligned_cols=98 Identities=16% Similarity=0.252 Sum_probs=75.3
Q ss_pred hCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCchhhhhhc-c-C
Q 037961 30 KTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMSITELEQN-V-A 95 (262)
Q Consensus 30 ~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~~-~-~ 95 (262)
..++..+||+||||.|.+++.++++ ..+|+.+|+++.+++.+++. ++++++.+| +... . .
T Consensus 88 ~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~D------a~~~l~~~ 161 (308)
T PLN02366 88 SIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGD------GVEFLKNA 161 (308)
T ss_pred hCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEECh------HHHHHhhc
Confidence 3467788999999999999999887 35899999999999999863 356777665 2211 1 1
Q ss_pred CCCceeeEEEccccccCC-----hhHHHHHHHHhhcCCCeEEEE
Q 037961 96 TQSSVDLVTIASALHWFD-----LPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 96 ~~~~~D~V~~~~~~~~~d-----~~~~l~~~~r~Lk~pgG~l~i 134 (262)
++++||+|++...-++.. ...+++.+.+.|+ |||++++
T Consensus 162 ~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~-pgGvlv~ 204 (308)
T PLN02366 162 PEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALR-PGGVVCT 204 (308)
T ss_pred cCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcC-CCcEEEE
Confidence 356899999876554432 2358999999999 9999987
No 121
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.10 E-value=1.2e-09 Score=92.07 Aligned_cols=109 Identities=19% Similarity=0.111 Sum_probs=76.3
Q ss_pred HHHHHHHHhhCC---CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC---CCceEEeCCCCchhhhhh
Q 037961 21 KELFKLIASKTP---KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL---PNIRYQLTPTMSITELEQ 92 (262)
Q Consensus 21 ~~~~~~l~~~~~---~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~ 92 (262)
+.+++.+..... ...+|||+|||+|.++..++.. +.+|+++|+|+.+++.|+++ .++++..+| +.+
T Consensus 71 e~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D------~~~ 144 (251)
T TIGR03704 71 EFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGD------LYD 144 (251)
T ss_pred HHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEee------chh
Confidence 455555554432 2357999999999999999875 45899999999999998864 345677665 211
Q ss_pred -cc-CCCCceeeEEEcccccc------CC---------------------hhHHHHHHHHhhcCCCeEEEEEe
Q 037961 93 -NV-ATQSSVDLVTIASALHW------FD---------------------LPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 93 -~~-~~~~~~D~V~~~~~~~~------~d---------------------~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
++ ...++||+|+++....- ++ ...++..+.++|+ |||.+++..
T Consensus 145 ~l~~~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~-~gG~l~l~~ 216 (251)
T TIGR03704 145 ALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLA-PGGHLLVET 216 (251)
T ss_pred hcchhcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcC-CCCEEEEEE
Confidence 11 01357999999865421 00 2357778889999 999999743
No 122
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.09 E-value=2.3e-10 Score=92.96 Aligned_cols=104 Identities=20% Similarity=0.281 Sum_probs=78.5
Q ss_pred CeEEEEcCcccHhHHHHHhh----CCeEEEEcCCHHHHHHHhcCC-----CceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961 35 NLAWDVGTRSGQAAASLAQI----YQHVIATDTSPKQLKFAIKLP-----NIRYQLTPTMSITELEQNVATQSSVDLVTI 105 (262)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~ 105 (262)
.+|||||||.|....++.+- .-.|.++|.||..++..++.. ++...+.| +...+ ...+++.+++|+|++
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~D-lt~~~-~~~~~~~~svD~it~ 150 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWD-LTSPS-LKEPPEEGSVDIITL 150 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhccccee-ccchh-ccCCCCcCccceEEE
Confidence 37899999999999999874 357999999999999988642 22222222 11111 234567899999999
Q ss_pred ccccccCChhH---HHHHHHHhhcCCCeEEEEEecCCCc
Q 037961 106 ASALHWFDLPQ---FYKQVKWVLKKPSGVIAAWTYTMPE 141 (262)
Q Consensus 106 ~~~~~~~d~~~---~l~~~~r~Lk~pgG~l~i~~~~~~~ 141 (262)
.+.+--+.+++ ++.++.++|| |||.|++-.|+...
T Consensus 151 IFvLSAi~pek~~~a~~nl~~llK-PGG~llfrDYg~~D 188 (264)
T KOG2361|consen 151 IFVLSAIHPEKMQSVIKNLRTLLK-PGGSLLFRDYGRYD 188 (264)
T ss_pred EEEEeccChHHHHHHHHHHHHHhC-CCcEEEEeecccch
Confidence 99998886555 8999999999 99999997776543
No 123
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.09 E-value=5e-10 Score=90.96 Aligned_cols=112 Identities=21% Similarity=0.400 Sum_probs=76.9
Q ss_pred hHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-----------C-----------
Q 037961 20 PKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-----------P----------- 75 (262)
Q Consensus 20 p~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----------~----------- 75 (262)
++..+..|....-....+|||||-.|.+|..+++.+ ..|+|+|+++..++.|++. .
T Consensus 45 ~D~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~ 124 (288)
T KOG2899|consen 45 SDPRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQF 124 (288)
T ss_pred CChhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCcccccccc
Confidence 344444443222355678999999999999999974 3699999999999999863 1
Q ss_pred -------------------CceEEeCC-CCchhhhhhccCCCCceeeEEEccccccCC-------hhHHHHHHHHhhcCC
Q 037961 76 -------------------NIRYQLTP-TMSITELEQNVATQSSVDLVTIASALHWFD-------LPQFYKQVKWVLKKP 128 (262)
Q Consensus 76 -------------------~~~~~~~~-~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d-------~~~~l~~~~r~Lk~p 128 (262)
++.+.... .+...|+ +-+....||+|+|-..-.|+. ...+++++.++|. |
T Consensus 125 ~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~df--l~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~-p 201 (288)
T KOG2899|consen 125 GPISQRNEADRAFTTDFPDNVWFQKENYVLESDDF--LDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLH-P 201 (288)
T ss_pred ccccccccccccccccCCcchhcccccEEEecchh--hhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhC-c
Confidence 11111111 1111122 123466899999987776662 4459999999999 9
Q ss_pred CeEEEE
Q 037961 129 SGVIAA 134 (262)
Q Consensus 129 gG~l~i 134 (262)
||+|++
T Consensus 202 gGiLvv 207 (288)
T KOG2899|consen 202 GGILVV 207 (288)
T ss_pred CcEEEE
Confidence 999999
No 124
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=99.07 E-value=3.4e-10 Score=92.70 Aligned_cols=87 Identities=23% Similarity=0.275 Sum_probs=70.6
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW 111 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~ 111 (262)
+...+|.|+|||.+.++. .....|...|+-+. +-.+..+ |+.++|++++++|++++..++.-
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a~---------~~~V~~c------Dm~~vPl~d~svDvaV~CLSLMg 240 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SERHKVHSFDLVAV---------NERVIAC------DMRNVPLEDESVDVAVFCLSLMG 240 (325)
T ss_pred cCceEEEecccchhhhhh---ccccceeeeeeecC---------CCceeec------cccCCcCccCcccEEEeeHhhhc
Confidence 567888999999998775 44667888887532 3334433 46778999999999999999998
Q ss_pred CChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 112 FDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 112 ~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.|...++.|++|+|+ |||.+.|-..
T Consensus 241 tn~~df~kEa~RiLk-~gG~l~IAEv 265 (325)
T KOG3045|consen 241 TNLADFIKEANRILK-PGGLLYIAEV 265 (325)
T ss_pred ccHHHHHHHHHHHhc-cCceEEEEeh
Confidence 899999999999999 9999999443
No 125
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.07 E-value=1.3e-09 Score=100.57 Aligned_cols=93 Identities=24% Similarity=0.173 Sum_probs=68.3
Q ss_pred CCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961 34 RNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVT 104 (262)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~ 104 (262)
..+|||+|||+|.++..++.. ..+|+++|+|+.+++.|+++ .++.+..++ +.. .++.++||+|+
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D------~~~-~~~~~~fDlIv 211 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSN------WFE-NIEKQKFDFIV 211 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecc------hhh-hCcCCCccEEE
Confidence 357999999999999998875 56999999999999999863 245666654 211 12456899999
Q ss_pred EccccccC-------------C--------------hhHHHHHHHHhhcCCCeEEEE
Q 037961 105 IASALHWF-------------D--------------LPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 105 ~~~~~~~~-------------d--------------~~~~l~~~~r~Lk~pgG~l~i 134 (262)
++...... + ...+++++.++|+ |||.+++
T Consensus 212 sNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~-~gG~l~l 267 (506)
T PRK01544 212 SNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLK-PNGKIIL 267 (506)
T ss_pred ECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhcc-CCCEEEE
Confidence 96543211 0 1235678889999 9999987
No 126
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.06 E-value=1.3e-09 Score=98.85 Aligned_cols=100 Identities=14% Similarity=0.194 Sum_probs=74.3
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhcc--CCCCceee
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNV--ATQSSVDL 102 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~~~D~ 102 (262)
.++.+|||+|||+|..+..++..+ .+|+++|+++.+++.++++ .++.+..+| +...+ ++.++||.
T Consensus 243 ~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D------~~~~~~~~~~~~fD~ 316 (427)
T PRK10901 243 QNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGD------ARDPAQWWDGQPFDR 316 (427)
T ss_pred CCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcC------cccchhhcccCCCCE
Confidence 467899999999999999999874 5899999999999998753 235566655 32221 23568999
Q ss_pred EEEcccc------------ccC-Ch----------hHHHHHHHHhhcCCCeEEEEEecC
Q 037961 103 VTIASAL------------HWF-DL----------PQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 103 V~~~~~~------------~~~-d~----------~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
|++...+ +|. .+ .+++..+.++|| |||.+++.+++
T Consensus 317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lk-pGG~lvystcs 374 (427)
T PRK10901 317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLK-PGGTLLYATCS 374 (427)
T ss_pred EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCC
Confidence 9964422 243 22 358999999999 99999986654
No 127
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.1e-09 Score=88.07 Aligned_cols=91 Identities=19% Similarity=0.185 Sum_probs=72.9
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLVTI 105 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~ 105 (262)
.++..|||||||+|..+..|++...+|+.+|..+...+.|+++ .|+.+.++|. ..-++ +.++||.|++
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG-----~~G~~-~~aPyD~I~V 144 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDG-----SKGWP-EEAPYDRIIV 144 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCc-----ccCCC-CCCCcCEEEE
Confidence 5789999999999999999999988999999999999999862 5788888871 11122 4588999998
Q ss_pred ccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 106 ASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
.-+..-+ =+.+.+.|| |||++++
T Consensus 145 taaa~~v-----P~~Ll~QL~-~gGrlv~ 167 (209)
T COG2518 145 TAAAPEV-----PEALLDQLK-PGGRLVI 167 (209)
T ss_pred eeccCCC-----CHHHHHhcc-cCCEEEE
Confidence 7665332 234667899 9999998
No 128
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.06 E-value=1.5e-09 Score=84.50 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=80.2
Q ss_pred HHHHHHHHhhCC------CCCeEEEEcCcccHhHHHHHhhCC--eEEEEcCCHHHHHHHhc------CC-CceEEeCCCC
Q 037961 21 KELFKLIASKTP------KRNLAWDVGTRSGQAAASLAQIYQ--HVIATDTSPKQLKFAIK------LP-NIRYQLTPTM 85 (262)
Q Consensus 21 ~~~~~~l~~~~~------~~~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~------~~-~~~~~~~~~~ 85 (262)
..+++++..... ...+|||+|||.|.+...|++.+. .++|+|.|+..++.|+. .+ .|+|.+.|
T Consensus 49 ~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~D-- 126 (227)
T KOG1271|consen 49 ERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLD-- 126 (227)
T ss_pred HHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEee--
Confidence 445667666543 334899999999999999999754 49999999999998864 23 38888876
Q ss_pred chhhhhhccCCCCceeeEEEcccc-----ccCC----hhHHHHHHHHhhcCCCeEEEEEecCCC
Q 037961 86 SITELEQNVATQSSVDLVTIASAL-----HWFD----LPQFYKQVKWVLKKPSGVIAAWTYTMP 140 (262)
Q Consensus 86 ~~~~~~~~~~~~~~~D~V~~~~~~-----~~~d----~~~~l~~~~r~Lk~pgG~l~i~~~~~~ 140 (262)
+-+-.+..++||+|+=-..+ +-.. +..-+..+.++|+ |||+|+|..++..
T Consensus 127 ----I~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~-~~gifvItSCN~T 185 (227)
T KOG1271|consen 127 ----ITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLS-PGGIFVITSCNFT 185 (227)
T ss_pred ----ccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccC-CCcEEEEEecCcc
Confidence 22212356788888753333 2121 1235778899999 9999999776654
No 129
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.05 E-value=1.3e-09 Score=99.26 Aligned_cols=122 Identities=10% Similarity=0.083 Sum_probs=84.0
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhh
Q 037961 21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQ 92 (262)
Q Consensus 21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~ 92 (262)
+.+++.+.+.+ .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|+++ .++++..+|.. .....
T Consensus 283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~--~~l~~ 360 (443)
T PRK13168 283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLE--EDFTD 360 (443)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChH--Hhhhh
Confidence 45566666554 3667999999999999999999999999999999999998853 46788877610 01122
Q ss_pred ccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHh
Q 037961 93 NVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAV 149 (262)
Q Consensus 93 ~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~ 149 (262)
.++.+++||+|+++..-.- ....++.+.+ ++ |++.+++.+ ++.++.+.+..+
T Consensus 361 ~~~~~~~fD~Vi~dPPr~g--~~~~~~~l~~-~~-~~~ivyvSC-np~tlaRDl~~L 412 (443)
T PRK13168 361 QPWALGGFDKVLLDPPRAG--AAEVMQALAK-LG-PKRIVYVSC-NPATLARDAGVL 412 (443)
T ss_pred hhhhcCCCCEEEECcCCcC--hHHHHHHHHh-cC-CCeEEEEEe-ChHHhhccHHHH
Confidence 3344568999998765332 2345555555 57 888877744 444444444444
No 130
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.05 E-value=1.2e-09 Score=87.49 Aligned_cols=106 Identities=19% Similarity=0.253 Sum_probs=65.4
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW 111 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~ 111 (262)
++..+|.|+|||.+.++..+. ....|..-|+-+. .+. +..+ |+..+|++++++|++++..++.-
T Consensus 71 ~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~-------n~~--Vtac------dia~vPL~~~svDv~VfcLSLMG 134 (219)
T PF05148_consen 71 PKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP-------NPR--VTAC------DIANVPLEDESVDVAVFCLSLMG 134 (219)
T ss_dssp -TTS-EEEES-TT-HHHHH---S---EEEEESS-S-------STT--EEES-------TTS-S--TT-EEEEEEES---S
T ss_pred CCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC-------CCC--EEEe------cCccCcCCCCceeEEEEEhhhhC
Confidence 556789999999999996653 4567888888632 222 3333 57889999999999999999999
Q ss_pred CChhHHHHHHHHhhcCCCeEEEEEecC--CCcccHHHHHhhccccc
Q 037961 112 FDLPQFYKQVKWVLKKPSGVIAAWTYT--MPEINESVGAVFKPFDT 155 (262)
Q Consensus 112 ~d~~~~l~~~~r~Lk~pgG~l~i~~~~--~~~~~~~~~~~~~~~~~ 155 (262)
.|...++.|+.|+|| |||.|.|.... ... ...+.+.+..+..
T Consensus 135 Tn~~~fi~EA~RvLK-~~G~L~IAEV~SRf~~-~~~F~~~~~~~GF 178 (219)
T PF05148_consen 135 TNWPDFIREANRVLK-PGGILKIAEVKSRFEN-VKQFIKALKKLGF 178 (219)
T ss_dssp S-HHHHHHHHHHHEE-EEEEEEEEEEGGG-S--HHHHHHHHHCTTE
T ss_pred CCcHHHHHHHHheec-cCcEEEEEEecccCcC-HHHHHHHHHHCCC
Confidence 999999999999999 99999995543 222 2455555555543
No 131
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.05 E-value=3.1e-09 Score=94.94 Aligned_cols=118 Identities=12% Similarity=0.127 Sum_probs=79.6
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhccCCCCceee
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQNVATQSSVDL 102 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 102 (262)
.++.+|||+|||+|.++...+..++ +|+++|+|+.+++.|+++ .+++++.+|.+.. ...+....++||+
T Consensus 219 ~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~--l~~~~~~~~~fDl 296 (396)
T PRK15128 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKL--LRTYRDRGEKFDV 296 (396)
T ss_pred cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHH--HHHHHhcCCCCCE
Confidence 4567899999999999988766655 899999999999998863 2467777762110 1111113568999
Q ss_pred EEEccccccCC----------hhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcc
Q 037961 103 VTIASALHWFD----------LPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKP 152 (262)
Q Consensus 103 V~~~~~~~~~d----------~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~ 152 (262)
|+++...---+ ...++..+.++|+ |||.|+.++++...-.+.+.++..+
T Consensus 297 VilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk-~gG~lv~~scs~~~~~~~f~~~v~~ 355 (396)
T PRK15128 297 IVMDPPKFVENKSQLMGACRGYKDINMLAIQLLN-PGGILLTFSCSGLMTSDLFQKIIAD 355 (396)
T ss_pred EEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcC-CCeEEEEEeCCCcCCHHHHHHHHHH
Confidence 99986642112 2234556789999 9999998776543323445554433
No 132
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.04 E-value=6.7e-10 Score=93.70 Aligned_cols=109 Identities=17% Similarity=0.158 Sum_probs=81.0
Q ss_pred hhCCCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC--------C----CceEEeCCCCchhhhhh-cc
Q 037961 29 SKTPKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL--------P----NIRYQLTPTMSITELEQ-NV 94 (262)
Q Consensus 29 ~~~~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~--------~----~~~~~~~~~~~~~~~~~-~~ 94 (262)
.+.++.+.++|+|||-|.-.+.+-.. ..+++|+|+.+.-+++|+++ . .+.++.+|.+. ..+.+ ++
T Consensus 113 ~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~-~~l~d~~e 191 (389)
T KOG1975|consen 113 LYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK-ERLMDLLE 191 (389)
T ss_pred HHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch-hHHHHhcc
Confidence 34568888999999998777766655 46899999999999999852 1 36778887221 12222 33
Q ss_pred CCCCceeeEEEccccccC--ChhH---HHHHHHHhhcCCCeEEEEEecCC
Q 037961 95 ATQSSVDLVTIASALHWF--DLPQ---FYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 95 ~~~~~~D~V~~~~~~~~~--d~~~---~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
..+.+||+|-|-+++|+. ..++ ++.++.+.|+ |||+|+-.....
T Consensus 192 ~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~Lk-pGG~FIgTiPds 240 (389)
T KOG1975|consen 192 FKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLK-PGGVFIGTIPDS 240 (389)
T ss_pred CCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcC-CCcEEEEecCcH
Confidence 456669999999999987 3333 8999999999 999999854443
No 133
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.04 E-value=9.6e-10 Score=89.77 Aligned_cols=100 Identities=20% Similarity=0.251 Sum_probs=71.0
Q ss_pred HHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhh-C--CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhh
Q 037961 23 LFKLIASKT--PKRNLAWDVGTRSGQAAASLAQI-Y--QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELE 91 (262)
Q Consensus 23 ~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~-~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~ 91 (262)
+...++..+ +++.+|||||||+|..|..++.. + ..|+++|..+.+++.|+++ .++.+..+|. ..
T Consensus 60 ~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg-----~~ 134 (209)
T PF01135_consen 60 MVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDG-----SE 134 (209)
T ss_dssp HHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-G-----GG
T ss_pred HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcch-----hh
Confidence 344444443 68899999999999999999886 3 3699999999999999863 5788888871 11
Q ss_pred hccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 92 QNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 92 ~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
.++ ..++||.|++..+.. ..-..+.+.|+ +||+|++
T Consensus 135 g~~-~~apfD~I~v~~a~~-----~ip~~l~~qL~-~gGrLV~ 170 (209)
T PF01135_consen 135 GWP-EEAPFDRIIVTAAVP-----EIPEALLEQLK-PGGRLVA 170 (209)
T ss_dssp TTG-GG-SEEEEEESSBBS-----S--HHHHHTEE-EEEEEEE
T ss_pred ccc-cCCCcCEEEEeeccc-----hHHHHHHHhcC-CCcEEEE
Confidence 122 456899999987764 23345777899 9999998
No 134
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.03 E-value=3e-09 Score=96.94 Aligned_cols=99 Identities=17% Similarity=0.239 Sum_probs=73.8
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceee
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDL 102 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 102 (262)
.++.+|||+|||+|..|..+++. ..+|+++|+|+.+++.++++ .++.+..+| +..++ ++++||+
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~D------a~~~~-~~~~fD~ 321 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGD------ARSFS-PEEQPDA 321 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCc------ccccc-cCCCCCE
Confidence 46789999999999999888764 45899999999999988753 346666654 33333 4568999
Q ss_pred EEEccc------------cccC-Ch----------hHHHHHHHHhhcCCCeEEEEEecC
Q 037961 103 VTIASA------------LHWF-DL----------PQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 103 V~~~~~------------~~~~-d~----------~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
|++.-. ..|. ++ .+++..+.++|| |||+|+..+++
T Consensus 322 Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk-pgG~lvystcs 379 (445)
T PRK14904 322 ILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLK-PGGVLVYATCS 379 (445)
T ss_pred EEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCC
Confidence 996311 1233 22 247999999999 99999986665
No 135
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.03 E-value=9.3e-10 Score=88.90 Aligned_cols=95 Identities=29% Similarity=0.385 Sum_probs=68.2
Q ss_pred CCCeEEEEcCcccHhHHHH-HhhCCeEEEEcCCHHHHHHHhcC-----CC-ceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961 33 KRNLAWDVGTRSGQAAASL-AQIYQHVIATDTSPKQLKFAIKL-----PN-IRYQLTPTMSITELEQNVATQSSVDLVTI 105 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~D~V~~ 105 (262)
...++||+|||.|..|..+ .+.+.+|..+|+++..++.|++. .+ .++.+. .++++.++.++||+|++
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~------gLQ~f~P~~~~YDlIW~ 128 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCV------GLQDFTPEEGKYDLIWI 128 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-------GGG----TT-EEEEEE
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEec------CHhhccCCCCcEeEEEe
Confidence 4578999999999999976 45688999999999999999842 22 222222 24555545689999999
Q ss_pred ccccccC---ChhHHHHHHHHhhcCCCeEEEE
Q 037961 106 ASALHWF---DLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 106 ~~~~~~~---d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
-+++.|+ |...+++.|...|+ |||.+++
T Consensus 129 QW~lghLTD~dlv~fL~RCk~~L~-~~G~Ivv 159 (218)
T PF05891_consen 129 QWCLGHLTDEDLVAFLKRCKQALK-PNGVIVV 159 (218)
T ss_dssp ES-GGGS-HHHHHHHHHHHHHHEE-EEEEEEE
T ss_pred hHhhccCCHHHHHHHHHHHHHhCc-CCcEEEE
Confidence 9999999 45569999999999 9999998
No 136
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.02 E-value=3.9e-09 Score=89.61 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=72.9
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceee
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDL 102 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 102 (262)
.++.+|||+|||+|..|..++.. ...|+++|+++.+++.++++ .++.+...| +..++...++||.
T Consensus 70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D------~~~~~~~~~~fD~ 143 (264)
T TIGR00446 70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFD------GRVFGAAVPKFDA 143 (264)
T ss_pred CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCC------HHHhhhhccCCCE
Confidence 46789999999999999998875 34899999999999988753 345666554 4444334557999
Q ss_pred EEEccccc--------------cC---------ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 103 VTIASALH--------------WF---------DLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 103 V~~~~~~~--------------~~---------d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
|++.-..- |. ...++++.+.++|| |||+|+..+++
T Consensus 144 Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lk-pgG~lvYstcs 201 (264)
T TIGR00446 144 ILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALK-PGGVLVYSTCS 201 (264)
T ss_pred EEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCC
Confidence 99743211 11 12348899999999 99999876554
No 137
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.02 E-value=2.3e-09 Score=97.09 Aligned_cols=100 Identities=16% Similarity=0.186 Sum_probs=74.2
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhcc-CCCCcee
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNV-ATQSSVD 101 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~D 101 (262)
.++.+|||+|||+|..|..++.. ..+|+++|+|+.+++.++++ .++.+..+| +..++ ..+++||
T Consensus 236 ~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~D------a~~l~~~~~~~fD 309 (431)
T PRK14903 236 EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIAD------AERLTEYVQDTFD 309 (431)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECc------hhhhhhhhhccCC
Confidence 46788999999999999999875 46899999999999998753 345666655 33332 2356899
Q ss_pred eEEEcccc---ccC--C------------------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 102 LVTIASAL---HWF--D------------------LPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 102 ~V~~~~~~---~~~--d------------------~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
.|++.-.+ ..+ + ..+++.++.++|| |||.++..+++
T Consensus 310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lk-pGG~LvYsTCs 368 (431)
T PRK14903 310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLE-KGGILLYSTCT 368 (431)
T ss_pred EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEECC
Confidence 99974322 221 1 2346889999999 99999886665
No 138
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.02 E-value=2.4e-09 Score=97.22 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=74.6
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhcc----CCCC
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNV----ATQS 98 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~----~~~~ 98 (262)
.++.+|||+|||+|..|..++.. ..+|+++|+++.+++.++++ .++.+..+| +..++ ...+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D------~~~~~~~~~~~~~ 324 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAAD------SRNLLELKPQWRG 324 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCC------hhhcccccccccc
Confidence 46789999999999999999875 25899999999999988752 356777665 33332 3357
Q ss_pred ceeeEEEccc------cc------cC-C----------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 99 SVDLVTIASA------LH------WF-D----------LPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 99 ~~D~V~~~~~------~~------~~-d----------~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
+||.|++.-. ++ |. . ..+++.++.++|| |||+|+..+++
T Consensus 325 ~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk-pgG~lvystcs 386 (434)
T PRK14901 325 YFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLK-PGGTLVYATCT 386 (434)
T ss_pred cCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCC
Confidence 8999997422 22 22 1 3468999999999 99999876654
No 139
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.01 E-value=4.7e-09 Score=91.40 Aligned_cols=118 Identities=12% Similarity=0.116 Sum_probs=76.4
Q ss_pred HHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhc
Q 037961 22 ELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQN 93 (262)
Q Consensus 22 ~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~ 93 (262)
.+++.+..... ++.+|||+|||+|.++..++..+.+|+|+|+|+.+++.|+++ .++++..+| +.++
T Consensus 160 ~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D------~~~~ 233 (315)
T PRK03522 160 QLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALD------STQF 233 (315)
T ss_pred HHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcC------HHHH
Confidence 34444444332 457899999999999999999999999999999999998753 467888776 3332
Q ss_pred cC-CCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHh
Q 037961 94 VA-TQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAV 149 (262)
Q Consensus 94 ~~-~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~ 149 (262)
.. ..++||+|+++..- -.....+.+...-++ |++.+++ .+++..+.+.+..+
T Consensus 234 ~~~~~~~~D~Vv~dPPr--~G~~~~~~~~l~~~~-~~~ivyv-sc~p~t~~rd~~~l 286 (315)
T PRK03522 234 ATAQGEVPDLVLVNPPR--RGIGKELCDYLSQMA-PRFILYS-SCNAQTMAKDLAHL 286 (315)
T ss_pred HHhcCCCCeEEEECCCC--CCccHHHHHHHHHcC-CCeEEEE-ECCcccchhHHhhc
Confidence 21 23579999987552 121222223333456 7776666 44444444444433
No 140
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.00 E-value=2.4e-09 Score=88.11 Aligned_cols=108 Identities=19% Similarity=0.133 Sum_probs=77.9
Q ss_pred hHHHHHHHHhh-CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc-C-----------------CCceEE
Q 037961 20 PKELFKLIASK-TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK-L-----------------PNIRYQ 80 (262)
Q Consensus 20 p~~~~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~-----------------~~~~~~ 80 (262)
.+.+.+++... .+++.+||..|||.|.-...|+.+|.+|+|+|+|+..++.+.+ . .+|++.
T Consensus 23 ~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~ 102 (218)
T PF05724_consen 23 NPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIY 102 (218)
T ss_dssp THHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEE
T ss_pred CHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEE
Confidence 34555555542 3566789999999999999999999999999999999999832 1 234566
Q ss_pred eCCCCchhhhhhccC-CCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEE
Q 037961 81 LTPTMSITELEQNVA-TQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i 134 (262)
++| +-+++. ..++||+|+=..+++-++ .++..+.+.++|+ |||.+++
T Consensus 103 ~gD------fF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~-p~g~~lL 153 (218)
T PF05724_consen 103 CGD------FFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLK-PGGRGLL 153 (218)
T ss_dssp ES-------TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEE-EEEEEEE
T ss_pred Ecc------cccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhC-CCCcEEE
Confidence 665 322221 235799999777777663 4558999999999 9999443
No 141
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.98 E-value=7.3e-09 Score=84.02 Aligned_cols=115 Identities=12% Similarity=-0.041 Sum_probs=75.8
Q ss_pred hCCCChHHHHHHHHhhC---CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcC------CCceEEeCCC
Q 037961 15 ARPNYPKELFKLIASKT---PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKL------PNIRYQLTPT 84 (262)
Q Consensus 15 ~rp~yp~~~~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~ 84 (262)
+||.- +.+.+.+.+.+ .++.+|||+|||+|.++..++.+ ..+|+++|.++..++.++++ .++.++.+|
T Consensus 33 ~Rp~~-d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D- 110 (199)
T PRK10909 33 LRPTT-DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTN- 110 (199)
T ss_pred cCcCC-HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEch-
Confidence 36655 44433333322 34578999999999999875544 56999999999999988753 356777665
Q ss_pred Cchhhhhh-ccCCCCceeeEEEccccccCChhHHHHHHHH--hhcCCCeEEEEEec
Q 037961 85 MSITELEQ-NVATQSSVDLVTIASALHWFDLPQFYKQVKW--VLKKPSGVIAAWTY 137 (262)
Q Consensus 85 ~~~~~~~~-~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r--~Lk~pgG~l~i~~~ 137 (262)
+.. ++....+||+|+++..++.--.+.+++.+.. +|+ |+|.+++-..
T Consensus 111 -----~~~~l~~~~~~fDlV~~DPPy~~g~~~~~l~~l~~~~~l~-~~~iv~ve~~ 160 (199)
T PRK10909 111 -----ALSFLAQPGTPHNVVFVDPPFRKGLLEETINLLEDNGWLA-DEALIYVESE 160 (199)
T ss_pred -----HHHHHhhcCCCceEEEECCCCCCChHHHHHHHHHHCCCcC-CCcEEEEEec
Confidence 222 2112457999999988643333345555544 368 8888887443
No 142
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.97 E-value=5.2e-09 Score=87.66 Aligned_cols=95 Identities=19% Similarity=0.214 Sum_probs=74.8
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL 109 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~ 109 (262)
.+..+|+|||+|+|.++..+++. ..+++..|. |..++.+++..++++..+| +- -++|. +|+|+..+.+
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~~~rv~~~~gd------~f-~~~P~--~D~~~l~~vL 168 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKEADRVEFVPGD------FF-DPLPV--ADVYLLRHVL 168 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHHTTTEEEEES-------TT-TCCSS--ESEEEEESSG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccccccccccccc------HH-hhhcc--ccceeeehhh
Confidence 45678999999999999999886 568999999 7888888887889999876 22 22344 9999999999
Q ss_pred ccCChh---HHHHHHHHhhcCCC--eEEEEEec
Q 037961 110 HWFDLP---QFYKQVKWVLKKPS--GVIAAWTY 137 (262)
Q Consensus 110 ~~~d~~---~~l~~~~r~Lk~pg--G~l~i~~~ 137 (262)
|..+.+ ++++++++.|+ || |+|+|...
T Consensus 169 h~~~d~~~~~iL~~~~~al~-pg~~g~llI~e~ 200 (241)
T PF00891_consen 169 HDWSDEDCVKILRNAAAALK-PGKDGRLLIIEM 200 (241)
T ss_dssp GGS-HHHHHHHHHHHHHHSE-ECTTEEEEEEEE
T ss_pred hhcchHHHHHHHHHHHHHhC-CCCCCeEEEEee
Confidence 977333 38999999999 99 99998544
No 143
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.96 E-value=7.5e-09 Score=86.29 Aligned_cols=98 Identities=16% Similarity=0.254 Sum_probs=70.8
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc--CCCCc
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV--ATQSS 99 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~ 99 (262)
.+..+|||+|||+|..+..++.. ..+|+++|+++++++.|+++ .+++++.++... .+..+. .+.++
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~--~L~~l~~~~~~~~ 144 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALS--ALDQLLNNDPKPE 144 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHH--HHHHHHhCCCCCC
Confidence 35678999999999999888764 45899999999999999863 467788776211 011111 12568
Q ss_pred eeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 100 VDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 100 ~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
||+|++...- -.....+..+.++|+ |||.+++
T Consensus 145 fD~VfiDa~k--~~y~~~~~~~~~ll~-~GG~ii~ 176 (234)
T PLN02781 145 FDFAFVDADK--PNYVHFHEQLLKLVK-VGGIIAF 176 (234)
T ss_pred CCEEEECCCH--HHHHHHHHHHHHhcC-CCeEEEE
Confidence 9999875221 023457899999999 9999887
No 144
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.95 E-value=6.1e-09 Score=94.38 Aligned_cols=102 Identities=13% Similarity=0.220 Sum_probs=71.7
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC---CCc--eEEeCCCCchhhhhhccC--CCCceee
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL---PNI--RYQLTPTMSITELEQNVA--TQSSVDL 102 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---~~~--~~~~~~~~~~~~~~~~~~--~~~~~D~ 102 (262)
.++.+|||+|||+|..|..++.. ..+|+++|+++.+++.++++ .++ .+...+ +|....+. +.++||.
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~----~d~~~~~~~~~~~~fD~ 312 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKD----GDGRGPSQWAENEQFDR 312 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEec----cccccccccccccccCE
Confidence 36789999999999999999886 36899999999999988753 222 221111 22222221 4578999
Q ss_pred EEEcc------ccc------cC-C----------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 103 VTIAS------ALH------WF-D----------LPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 103 V~~~~------~~~------~~-d----------~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
|++.- .++ |. + ..+++.++.++|| |||+|+..+++
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lk-pgG~lvystcs 370 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLK-TGGTLVYATCS 370 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcC-CCcEEEEEeCC
Confidence 99631 222 22 2 2458999999999 99999986665
No 145
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.94 E-value=4.9e-09 Score=100.42 Aligned_cols=101 Identities=19% Similarity=0.169 Sum_probs=74.7
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhccCCCCceee
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQNVATQSSVDL 102 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D~ 102 (262)
.++.+|||+|||+|.++..++..|+ +|+++|+|+.+++.|+++ .+++++.+|.+.. ... ..++||+
T Consensus 537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~--l~~---~~~~fDl 611 (702)
T PRK11783 537 AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAW--LKE---AREQFDL 611 (702)
T ss_pred cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHH--HHH---cCCCcCE
Confidence 3567899999999999999998876 699999999999999863 2467777762110 111 1468999
Q ss_pred EEEccccc-----------cC-ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 103 VTIASALH-----------WF-DLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 103 V~~~~~~~-----------~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
|++..... .. +...++..+.++|+ |||.|++.+..
T Consensus 612 IilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~-~gG~l~~~~~~ 658 (702)
T PRK11783 612 IFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLR-PGGTLYFSNNK 658 (702)
T ss_pred EEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcC-CCCEEEEEeCC
Confidence 99864421 11 34557888999999 99999885543
No 146
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.94 E-value=6.3e-09 Score=94.81 Aligned_cols=99 Identities=17% Similarity=0.194 Sum_probs=73.0
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhcc--CCCCce
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNV--ATQSSV 100 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~ 100 (262)
.++.+|||+|||+|..+..++.. ..+|+++|+++.+++.++++ .++.+..+| +.... ++ ++|
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D------~~~~~~~~~-~~f 321 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALD------ARKVHEKFA-EKF 321 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCC------cccccchhc-ccC
Confidence 46688999999999999999875 36899999999999988752 356777665 32221 22 679
Q ss_pred eeEEEccccc------------cC-C----------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 101 DLVTIASALH------------WF-D----------LPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 101 D~V~~~~~~~------------~~-d----------~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
|+|++..... |. . ...+++.+.++|| |||+|+..++.
T Consensus 322 D~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lk-pGG~lvystcs 381 (444)
T PRK14902 322 DKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLK-KGGILVYSTCT 381 (444)
T ss_pred CEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcC-CCCEEEEEcCC
Confidence 9999864321 22 1 1347899999999 99999875544
No 147
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.91 E-value=1.2e-08 Score=84.28 Aligned_cols=93 Identities=15% Similarity=0.167 Sum_probs=63.8
Q ss_pred CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHH-HhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKF-AIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH 110 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~ 110 (262)
++.+|||+|||||.+|..+++.|+ +|+|+|+++.|+.. .++.+++......+...-+.++....-..+|+++++..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~~DvsfiS~~-- 152 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFATFDVSFISLI-- 152 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCceeeeEEEeehH--
Confidence 667899999999999999999965 79999999988875 66666654333321111122223223346777665543
Q ss_pred cCChhHHHHHHHHhhcCCCeEEEE
Q 037961 111 WFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 111 ~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
..+..+.++|+ | |.+++
T Consensus 153 -----~~l~~i~~~l~-~-~~~~~ 169 (228)
T TIGR00478 153 -----SILPELDLLLN-P-NDLTL 169 (228)
T ss_pred -----hHHHHHHHHhC-c-CeEEE
Confidence 35889999999 8 76654
No 148
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.90 E-value=1.6e-08 Score=81.86 Aligned_cols=100 Identities=25% Similarity=0.347 Sum_probs=72.4
Q ss_pred CeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961 35 NLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~ 106 (262)
..+||||||.|.+...+|.. ...++|+|++...+..+.+ ..|+.++.++.... +.. -++++++|.|..+
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~--l~~-~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDAREL--LRR-LFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTH--HHH-HSTTTSEEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHH--Hhh-cccCCchheEEEe
Confidence 38899999999999999986 5689999999999987753 48999999872110 122 2467899999999
Q ss_pred cccccCC---------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 107 SALHWFD---------LPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 107 ~~~~~~d---------~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
+.=.|.. ...+++.+.++|+ |||.|.+.+-.
T Consensus 96 FPDPWpK~rH~krRl~~~~fl~~~~~~L~-~gG~l~~~TD~ 135 (195)
T PF02390_consen 96 FPDPWPKKRHHKRRLVNPEFLELLARVLK-PGGELYFATDV 135 (195)
T ss_dssp S-----SGGGGGGSTTSHHHHHHHHHHEE-EEEEEEEEES-
T ss_pred CCCCCcccchhhhhcCCchHHHHHHHHcC-CCCEEEEEeCC
Confidence 9988883 2338999999999 99999886644
No 149
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.90 E-value=6.6e-09 Score=88.62 Aligned_cols=84 Identities=10% Similarity=0.037 Sum_probs=64.4
Q ss_pred hHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC---CCceEEeCCCCchhhhhhcc
Q 037961 20 PKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL---PNIRYQLTPTMSITELEQNV 94 (262)
Q Consensus 20 p~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~ 94 (262)
.+.+.+.+.... .++..|||+|||+|.+|..+++++.+|+|+|+++.|++.+++. ++++++.+| +..++
T Consensus 27 ~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D------~~~~~ 100 (272)
T PRK00274 27 DENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGD------ALKVD 100 (272)
T ss_pred CHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEECh------hhcCC
Confidence 456677776654 4678899999999999999999988999999999999999864 477888766 44443
Q ss_pred CCCCceeeEEEcccc
Q 037961 95 ATQSSVDLVTIASAL 109 (262)
Q Consensus 95 ~~~~~~D~V~~~~~~ 109 (262)
+++-.+|.|+++...
T Consensus 101 ~~~~~~~~vv~NlPY 115 (272)
T PRK00274 101 LSELQPLKVVANLPY 115 (272)
T ss_pred HHHcCcceEEEeCCc
Confidence 332225888888664
No 150
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.87 E-value=2.4e-08 Score=85.37 Aligned_cols=121 Identities=25% Similarity=0.271 Sum_probs=77.6
Q ss_pred HHHHHHHHhhCCCCC-eEEEEcCcccHhHHHHHhhCC--eEEEEcCCHHHHHHHhcC---CC---ceEEeCCCCchhhhh
Q 037961 21 KELFKLIASKTPKRN-LAWDVGTRSGQAAASLAQIYQ--HVIATDTSPKQLKFAIKL---PN---IRYQLTPTMSITELE 91 (262)
Q Consensus 21 ~~~~~~l~~~~~~~~-~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~---~~---~~~~~~~~~~~~~~~ 91 (262)
..+++.+........ +|||+|||+|..+..++..+. +|+|+|+|+..++.|+++ .+ +.++.++- ++
T Consensus 97 e~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl-----f~ 171 (280)
T COG2890 97 ELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDL-----FE 171 (280)
T ss_pred HHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec-----cc
Confidence 345555443333222 799999999999999999865 999999999999999863 22 22333220 11
Q ss_pred hccCCCCceeeEEEccccc-----cC-------C--------------hhHHHHHHHHhhcCCCeEEEEEe-cCCCcccH
Q 037961 92 QNVATQSSVDLVTIASALH-----WF-------D--------------LPQFYKQVKWVLKKPSGVIAAWT-YTMPEINE 144 (262)
Q Consensus 92 ~~~~~~~~~D~V~~~~~~~-----~~-------d--------------~~~~l~~~~r~Lk~pgG~l~i~~-~~~~~~~~ 144 (262)
. -.++||+|++|...= .. + ...++.++.+.|+ |||.+++-. +.. .+
T Consensus 172 ~---~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~-~~g~l~le~g~~q---~~ 244 (280)
T COG2890 172 P---LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILK-PGGVLILEIGLTQ---GE 244 (280)
T ss_pred c---cCCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcC-CCcEEEEEECCCc---HH
Confidence 1 234899999974421 00 1 2236778899999 999998832 222 24
Q ss_pred HHHHhhccc
Q 037961 145 SVGAVFKPF 153 (262)
Q Consensus 145 ~~~~~~~~~ 153 (262)
.+.+++.+.
T Consensus 245 ~v~~~~~~~ 253 (280)
T COG2890 245 AVKALFEDT 253 (280)
T ss_pred HHHHHHHhc
Confidence 455555443
No 151
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.86 E-value=2.2e-08 Score=82.47 Aligned_cols=114 Identities=24% Similarity=0.286 Sum_probs=85.7
Q ss_pred hCCCChHHHHHHHHhh-CCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCC
Q 037961 15 ARPNYPKELFKLIASK-TPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTP 83 (262)
Q Consensus 15 ~rp~yp~~~~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~ 83 (262)
.++-||+...-.+... +.++.+|+|.|.|+|.+|..|+.. -.+|+..|+.++.++.|+++ .++.+..+|
T Consensus 75 tQiIyPKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~D 154 (256)
T COG2519 75 TQIIYPKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGD 154 (256)
T ss_pred CceecCCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecc
Confidence 4456777654444332 469999999999999999999974 35899999999999999864 235555554
Q ss_pred CCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCC
Q 037961 84 TMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMP 140 (262)
Q Consensus 84 ~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~ 140 (262)
+.+...++ .||.|+.... ||-.+++.+.++|+ |||.++++.....
T Consensus 155 ------v~~~~~~~-~vDav~LDmp----~PW~~le~~~~~Lk-pgg~~~~y~P~ve 199 (256)
T COG2519 155 ------VREGIDEE-DVDAVFLDLP----DPWNVLEHVSDALK-PGGVVVVYSPTVE 199 (256)
T ss_pred ------cccccccc-ccCEEEEcCC----ChHHHHHHHHHHhC-CCcEEEEEcCCHH
Confidence 43333333 8999996522 77789999999999 9999999876543
No 152
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.86 E-value=1e-08 Score=93.19 Aligned_cols=111 Identities=14% Similarity=0.147 Sum_probs=77.4
Q ss_pred ChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhh
Q 037961 19 YPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITEL 90 (262)
Q Consensus 19 yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~ 90 (262)
..+.+++.+.... .++.+|||+|||+|.++..+++.+.+|+|+|+++.|++.|+++ .+++++.+|.. ..+
T Consensus 276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~--~~l 353 (431)
T TIGR00479 276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLE--TVL 353 (431)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHH--HHH
Confidence 3455666666554 3567899999999999999999888999999999999998863 57888887610 011
Q ss_pred hhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 91 EQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 91 ~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
..++..+.+||+|++...---+ ...+++.+.+ ++ |++.+++
T Consensus 354 ~~~~~~~~~~D~vi~dPPr~G~-~~~~l~~l~~-l~-~~~ivyv 394 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLDPPRKGC-AAEVLRTIIE-LK-PERIVYV 394 (431)
T ss_pred HHHHhcCCCCCEEEECcCCCCC-CHHHHHHHHh-cC-CCEEEEE
Confidence 2223345679999975542111 2345565554 78 8887666
No 153
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.85 E-value=1.5e-08 Score=85.77 Aligned_cols=84 Identities=13% Similarity=0.109 Sum_probs=65.5
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhcc
Q 037961 21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQNV 94 (262)
Q Consensus 21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~ 94 (262)
+.+.+.+.... .++.+|||+|||+|.+|..+++.+.+|+++|+++.|++.+++. +++.++.+| +..++
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D------~~~~~ 88 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGD------ALKVD 88 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEec------cccCC
Confidence 44556666554 4678999999999999999999988999999999999998753 467777765 44444
Q ss_pred CCCCceeeEEEccccccC
Q 037961 95 ATQSSVDLVTIASALHWF 112 (262)
Q Consensus 95 ~~~~~~D~V~~~~~~~~~ 112 (262)
++ .||.|+++...+..
T Consensus 89 ~~--~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 89 LP--EFNKVVSNLPYQIS 104 (258)
T ss_pred ch--hceEEEEcCCcccC
Confidence 33 48999999887653
No 154
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.83 E-value=1.4e-08 Score=82.11 Aligned_cols=95 Identities=24% Similarity=0.337 Sum_probs=62.5
Q ss_pred CCCeEEEEcCcccH----hHHHHHh---h----CCeEEEEcCCHHHHHHHhcC---------------------------
Q 037961 33 KRNLAWDVGTRSGQ----AAASLAQ---I----YQHVIATDTSPKQLKFAIKL--------------------------- 74 (262)
Q Consensus 33 ~~~~vlDvGcG~G~----~~~~l~~---~----~~~v~~vD~s~~~~~~a~~~--------------------------- 74 (262)
+.-+|+.+||+||. +++.+.. . ..+|+|+|+|+.+++.|++-
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45789999999995 3334444 1 24899999999999999851
Q ss_pred -------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCChh---HHHHHHHHhhcCCCeEEEE
Q 037961 75 -------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLP---QFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 75 -------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~---~~l~~~~r~Lk~pgG~l~i 134 (262)
..+.|...+ +-+.+.+.+.||+|+|.+++-++|.+ ++++.+.+.|+ |||.|++
T Consensus 111 ~v~~~lr~~V~F~~~N------L~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~-pgG~L~l 173 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHN------LLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLK-PGGYLFL 173 (196)
T ss_dssp TE-HHHHTTEEEEE--------TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred eEChHHcCceEEEecc------cCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcC-CCCEEEE
Confidence 234444433 33322356789999999999999654 49999999999 9999998
No 155
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.83 E-value=3.7e-08 Score=83.20 Aligned_cols=83 Identities=12% Similarity=0.125 Sum_probs=63.8
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhcc
Q 037961 21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQNV 94 (262)
Q Consensus 21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~ 94 (262)
+.+.+.+.+.. .++.+|||+|||+|.+|..+++.+.+|+++|+++.|++.+++. +++++..+| +...+
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D------~~~~~ 88 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGD------ALKVD 88 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECc------hhcCC
Confidence 45566666654 3678999999999999999999999999999999999988753 567777665 44443
Q ss_pred CCCCcee---eEEEcccccc
Q 037961 95 ATQSSVD---LVTIASALHW 111 (262)
Q Consensus 95 ~~~~~~D---~V~~~~~~~~ 111 (262)
++ ++| +|+++...|+
T Consensus 89 ~~--~~d~~~~vvsNlPy~i 106 (253)
T TIGR00755 89 LP--DFPKQLKVVSNLPYNI 106 (253)
T ss_pred hh--HcCCcceEEEcCChhh
Confidence 32 456 8888877664
No 156
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.83 E-value=3.7e-08 Score=84.06 Aligned_cols=100 Identities=19% Similarity=0.255 Sum_probs=69.5
Q ss_pred CCeEEEEcCcccH----hHHHHHhh------CCeEEEEcCCHHHHHHHhcC--C-----C------------------ce
Q 037961 34 RNLAWDVGTRSGQ----AAASLAQI------YQHVIATDTSPKQLKFAIKL--P-----N------------------IR 78 (262)
Q Consensus 34 ~~~vlDvGcG~G~----~~~~l~~~------~~~v~~vD~s~~~~~~a~~~--~-----~------------------~~ 78 (262)
.-+|+..||+||. +++.+.+. ..+|+|+|+|+.+++.|++- + + -.
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3689999999995 33344442 24799999999999999852 1 0 01
Q ss_pred EEeCC------CCchhhhhhccC-CCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEE
Q 037961 79 YQLTP------TMSITELEQNVA-TQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 79 ~~~~~------~~~~~~~~~~~~-~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+...+ .+...++.+.++ +.+.||+|+|.+++.+++ ..++++.+.+.|+ |||.|++
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~-pgG~L~l 260 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLK-PDGLLFA 260 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhC-CCcEEEE
Confidence 22222 122234433222 257899999999999994 3459999999999 9999877
No 157
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.81 E-value=1.9e-08 Score=80.06 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=64.0
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC---------CCceEEeCCCCchhhhhhccCCCCce
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL---------PNIRYQLTPTMSITELEQNVATQSSV 100 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (262)
.++.+|||+|||+|..+..++.. ..+|+.+|.++ .++..+.+ .++.+...+ |.. +.....+...+|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~-Wg~-~~~~~~~~~~~~ 120 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLD-WGD-ELDSDLLEPHSF 120 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE---TTS--HHHHHHS-SSB
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEE-ecC-cccccccccccC
Confidence 36789999999999999999988 67999999998 77766532 334444443 211 111111245689
Q ss_pred eeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961 101 DLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 101 D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
|+|+++-+++.- ..+.+++-+.++|+ |+|.+++
T Consensus 121 D~IlasDv~Y~~~~~~~L~~tl~~ll~-~~~~vl~ 154 (173)
T PF10294_consen 121 DVILASDVLYDEELFEPLVRTLKRLLK-PNGKVLL 154 (173)
T ss_dssp SEEEEES--S-GGGHHHHHHHHHHHBT-T-TTEEE
T ss_pred CEEEEecccchHHHHHHHHHHHHHHhC-CCCEEEE
Confidence 999999999987 67779999999999 8888665
No 158
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.81 E-value=1.2e-08 Score=92.35 Aligned_cols=119 Identities=18% Similarity=0.240 Sum_probs=79.3
Q ss_pred hhhHHHHHHHHhhCCCChHHHHHHHHhhCC------CCCeEEEEcCcccHhHHHHHhhC------CeEEEEcCCHHHHHH
Q 037961 3 ELFIKQANLYAVARPNYPKELFKLIASKTP------KRNLAWDVGTRSGQAAASLAQIY------QHVIATDTSPKQLKF 70 (262)
Q Consensus 3 ~~F~~~a~~Y~~~rp~yp~~~~~~l~~~~~------~~~~vlDvGcG~G~~~~~l~~~~------~~v~~vD~s~~~~~~ 70 (262)
+.|+++...|+.++ +.+...|.+... ++.+|+|||||+|.++...++.+ .+|++||-|+.++..
T Consensus 154 e~fE~D~vKY~~Ye----~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~ 229 (448)
T PF05185_consen 154 EVFEKDPVKYDQYE----RAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVT 229 (448)
T ss_dssp HHHCC-HHHHHHHH----HHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHH
T ss_pred hhHhcCHHHHHHHH----HHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHH
Confidence 56888999998874 455555555543 25789999999999998776654 589999999987765
Q ss_pred Hhc----C---CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEE
Q 037961 71 AIK----L---PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIA 133 (262)
Q Consensus 71 a~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~ 133 (262)
+++ . ..|+++.++ .+++..+ .++|+|++-..=...+ ....+..+.|.|| |||.++
T Consensus 230 l~~~v~~n~w~~~V~vi~~d------~r~v~lp-ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLk-p~Gi~I 294 (448)
T PF05185_consen 230 LQKRVNANGWGDKVTVIHGD------MREVELP-EKVDIIVSELLGSFGDNELSPECLDAADRFLK-PDGIMI 294 (448)
T ss_dssp HHHHHHHTTTTTTEEEEES-------TTTSCHS-S-EEEEEE---BTTBTTTSHHHHHHHGGGGEE-EEEEEE
T ss_pred HHHHHHhcCCCCeEEEEeCc------ccCCCCC-CceeEEEEeccCCccccccCHHHHHHHHhhcC-CCCEEe
Confidence 532 1 678888875 5555433 4899999743211112 2346788889999 998876
No 159
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.81 E-value=9.4e-08 Score=73.61 Aligned_cols=114 Identities=15% Similarity=0.168 Sum_probs=87.6
Q ss_pred HHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhc-CCCceEEeCCCCchhhhhhcc-C
Q 037961 23 LFKLIASKTP--KRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIK-LPNIRYQLTPTMSITELEQNV-A 95 (262)
Q Consensus 23 ~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~-~ 95 (262)
+.+.+++.+. ++.-|||+|.|||.+|..+.+++ .+++++|.|++......+ .+.++++++|.+.+.. .+. .
T Consensus 36 lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~--~l~e~ 113 (194)
T COG3963 36 LARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRT--TLGEH 113 (194)
T ss_pred HHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHH--HHhhc
Confidence 3445555442 55679999999999999999986 479999999999998876 5888899888322110 111 3
Q ss_pred CCCceeeEEEccccccCChhH---HHHHHHHhhcCCCeEEEEEecCC
Q 037961 96 TQSSVDLVTIASALHWFDLPQ---FYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 96 ~~~~~D~V~~~~~~~~~d~~~---~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
....||.|+|+..+--+.+.. .++++...|. +||.++.+.|++
T Consensus 114 ~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~-~gg~lvqftYgp 159 (194)
T COG3963 114 KGQFFDSVISGLPLLNFPMHRRIAILESLLYRLP-AGGPLVQFTYGP 159 (194)
T ss_pred CCCeeeeEEeccccccCcHHHHHHHHHHHHHhcC-CCCeEEEEEecC
Confidence 567799999999888775444 7888889999 999999988873
No 160
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.79 E-value=9.8e-09 Score=85.63 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=93.0
Q ss_pred hHHHHHHHHhhCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCC
Q 037961 5 FIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPT 84 (262)
Q Consensus 5 F~~~a~~Y~~~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~ 84 (262)
|++.|......|+..-+....++. ..+.+..++|+|||.|..+..= ....++|.|.+...+..+++........
T Consensus 18 Yd~ia~~fs~tr~~~Wp~v~qfl~-~~~~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~~~~~~~~--- 91 (293)
T KOG1331|consen 18 YDKIATHFSATRAAPWPMVRQFLD-SQPTGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRSGGDNVCR--- 91 (293)
T ss_pred HHHhhhhccccccCccHHHHHHHh-ccCCcceeeecccCCcccCcCC--CcceeeecchhhhhccccccCCCceeeh---
Confidence 556666666666655455454444 4456889999999999765321 3557999999999998888653323332
Q ss_pred CchhhhhhccCCCCceeeEEEccccccCC----hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 85 MSITELEQNVATQSSVDLVTIASALHWFD----LPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 85 ~~~~~~~~~~~~~~~~D~V~~~~~~~~~d----~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
.|+-.+|+++.+||.+++...+||+. ...+++++.|+|+ |||...+|.+.
T Consensus 92 ---ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lr-pgg~~lvyvwa 145 (293)
T KOG1331|consen 92 ---ADALKLPFREESFDAALSIAVIHHLSTRERRERALEELLRVLR-PGGNALVYVWA 145 (293)
T ss_pred ---hhhhcCCCCCCccccchhhhhhhhhhhHHHHHHHHHHHHHHhc-CCCceEEEEeh
Confidence 56888999999999999999999993 3349999999999 99998886654
No 161
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.79 E-value=5.7e-09 Score=93.42 Aligned_cols=98 Identities=19% Similarity=0.239 Sum_probs=70.8
Q ss_pred CCCeEEEEcCcccHhHHHHHhhCCeEEE---EcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIYQHVIA---TDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL 109 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~---vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~ 109 (262)
.-+++||+|||+|+++..|.+++--+.. -|..+.+++.|-++ ++.-..+. ---..+|+++++||+|.|+.++
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR-Gvpa~~~~----~~s~rLPfp~~~fDmvHcsrc~ 191 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER-GVPAMIGV----LGSQRLPFPSNAFDMVHCSRCL 191 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc-Ccchhhhh----hccccccCCccchhhhhccccc
Confidence 4478899999999999999998764443 35566677766543 12222111 0135688999999999987776
Q ss_pred -ccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 110 -HWF-DLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 110 -~~~-d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
.|. +-...+-++.|+|| |||.++...
T Consensus 192 i~W~~~~g~~l~evdRvLR-pGGyfv~S~ 219 (506)
T PF03141_consen 192 IPWHPNDGFLLFEVDRVLR-PGGYFVLSG 219 (506)
T ss_pred ccchhcccceeehhhhhhc-cCceEEecC
Confidence 577 44568999999999 999987743
No 162
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.79 E-value=4.9e-08 Score=86.96 Aligned_cols=119 Identities=10% Similarity=0.129 Sum_probs=80.2
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhh
Q 037961 21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQ 92 (262)
Q Consensus 21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~ 92 (262)
+.+++.+...+ .++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|+++ .++++..++ +.+
T Consensus 219 ~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d------~~~ 292 (374)
T TIGR02085 219 AQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALD------SAK 292 (374)
T ss_pred HHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECC------HHH
Confidence 34455554443 2457899999999999999999899999999999999988853 367787766 322
Q ss_pred cc-CCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHh
Q 037961 93 NV-ATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAV 149 (262)
Q Consensus 93 ~~-~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~ 149 (262)
.. ...++||+|+++..---++ .++++.+. -++ |++.+++.+ +...+.+.+..+
T Consensus 293 ~~~~~~~~~D~vi~DPPr~G~~-~~~l~~l~-~~~-p~~ivyvsc-~p~TlaRDl~~L 346 (374)
T TIGR02085 293 FATAQMSAPELVLVNPPRRGIG-KELCDYLS-QMA-PKFILYSSC-NAQTMAKDIAEL 346 (374)
T ss_pred HHHhcCCCCCEEEECCCCCCCc-HHHHHHHH-hcC-CCeEEEEEe-CHHHHHHHHHHh
Confidence 11 1124599999886643222 34555554 368 888887743 444444555555
No 163
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.77 E-value=1.5e-08 Score=86.90 Aligned_cols=93 Identities=22% Similarity=0.149 Sum_probs=70.0
Q ss_pred CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVT 104 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~ 104 (262)
++.+|||||||||.+++..++.|+ +|+|+|-|. +++.|++. .-+++..+. ++++.+|-+++|+|+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gk------vEdi~LP~eKVDiIv 132 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGK------VEDIELPVEKVDIIV 132 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecc------eEEEecCccceeEEe
Confidence 678999999999999999999986 799999994 44777652 235556544 555556678999999
Q ss_pred EccccccCChhH----HHHHHHHhhcCCCeEEE
Q 037961 105 IASALHWFDLPQ----FYKQVKWVLKKPSGVIA 133 (262)
Q Consensus 105 ~~~~~~~~d~~~----~l~~~~r~Lk~pgG~l~ 133 (262)
+-+.=+|+=.+. ++-.=-+.|+ |||.++
T Consensus 133 SEWMGy~Ll~EsMldsVl~ARdkwL~-~~G~i~ 164 (346)
T KOG1499|consen 133 SEWMGYFLLYESMLDSVLYARDKWLK-EGGLIY 164 (346)
T ss_pred ehhhhHHHHHhhhhhhhhhhhhhccC-CCceEc
Confidence 987766663333 4444457799 999876
No 164
>PLN02823 spermine synthase
Probab=98.77 E-value=8.3e-08 Score=83.84 Aligned_cols=111 Identities=17% Similarity=0.234 Sum_probs=78.7
Q ss_pred ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCc
Q 037961 19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMS 86 (262)
Q Consensus 19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~ 86 (262)
|.+.+....+-..+...+||.+|+|.|..++.++++ ..+|+++|+++.+++.+++. ++++++.+|
T Consensus 89 YhE~l~h~~l~~~~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~D--- 165 (336)
T PLN02823 89 YHESLVHPALLHHPNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIIND--- 165 (336)
T ss_pred HHHHHHhHHHhhCCCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEECh---
Confidence 544444443334456678999999999999988875 36899999999999999863 456666665
Q ss_pred hhhhhh-ccCCCCceeeEEEcccccc-------CChhHHHH-HHHHhhcCCCeEEEEEe
Q 037961 87 ITELEQ-NVATQSSVDLVTIASALHW-------FDLPQFYK-QVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 87 ~~~~~~-~~~~~~~~D~V~~~~~~~~-------~d~~~~l~-~~~r~Lk~pgG~l~i~~ 136 (262)
+.. +.-..++||+|++...=.+ +=...+++ .+.+.|+ |||++++..
T Consensus 166 ---a~~~L~~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~-p~Gvlv~q~ 220 (336)
T PLN02823 166 ---ARAELEKRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLN-PGGIFVTQA 220 (336)
T ss_pred ---hHHHHhhCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcC-CCcEEEEec
Confidence 222 2224578999998742211 11345787 8999999 999998753
No 165
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.77 E-value=4.3e-08 Score=84.25 Aligned_cols=85 Identities=14% Similarity=0.166 Sum_probs=65.6
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc-------CCCceEEeCCCCchhhhh
Q 037961 21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK-------LPNIRYQLTPTMSITELE 91 (262)
Q Consensus 21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-------~~~~~~~~~~~~~~~~~~ 91 (262)
+.+++.+.... .++..|||||||+|.+|..+++.+.+|+++|+++.|++.+++ ..+++++.+| +.
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~D------al 95 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGD------AL 95 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECC------Hh
Confidence 34555665544 467899999999999999999999999999999999998875 2467888776 33
Q ss_pred hccCCCCceeeEEEccccccCC
Q 037961 92 QNVATQSSVDLVTIASALHWFD 113 (262)
Q Consensus 92 ~~~~~~~~~D~V~~~~~~~~~d 113 (262)
... ...||.|+++...++..
T Consensus 96 ~~~--~~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 96 KTE--FPYFDVCVANVPYQISS 115 (294)
T ss_pred hhc--ccccCEEEecCCcccCc
Confidence 332 23689999988877654
No 166
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.77 E-value=1.1e-07 Score=76.70 Aligned_cols=108 Identities=9% Similarity=0.048 Sum_probs=72.0
Q ss_pred HHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc
Q 037961 23 LFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV 94 (262)
Q Consensus 23 ~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~ 94 (262)
+++.+... -.+.++||++||+|.++..++.+|+ +|+++|.++.+++.++++ .+++++.+|... .+..+.
T Consensus 40 ~f~~l~~~-~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~--~l~~~~ 116 (189)
T TIGR00095 40 FFNILRPE-IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALR--ALKFLA 116 (189)
T ss_pred HHHHHHHh-cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHH--HHHHhh
Confidence 34444332 2567899999999999999999987 899999999999988753 245666665110 011111
Q ss_pred CCCCceeeEEEccccccCChhHHHHHHHH--hhcCCCeEEEE
Q 037961 95 ATQSSVDLVTIASALHWFDLPQFYKQVKW--VLKKPSGVIAA 134 (262)
Q Consensus 95 ~~~~~~D~V~~~~~~~~~d~~~~l~~~~r--~Lk~pgG~l~i 134 (262)
-....||+|+....+..-..+.+++.+.+ +|+ ++|.+++
T Consensus 117 ~~~~~~dvv~~DPPy~~~~~~~~l~~l~~~~~l~-~~~iiv~ 157 (189)
T TIGR00095 117 KKPTFDNVIYLDPPFFNGALQALLELCENNWILE-DTVLIVV 157 (189)
T ss_pred ccCCCceEEEECcCCCCCcHHHHHHHHHHCCCCC-CCeEEEE
Confidence 11224899988777754444555555543 678 8888777
No 167
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.75 E-value=8.6e-08 Score=78.29 Aligned_cols=95 Identities=22% Similarity=0.308 Sum_probs=72.8
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEe-CCCCchhhhhhccCCCCce
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQL-TPTMSITELEQNVATQSSV 100 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~ 100 (262)
.+..+|||+|.+.|..+..++.. ..+++++|.++++.+.|+++ ..+..+. ++.+ ..++. ...++|
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal--~~l~~--~~~~~f 133 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDAL--DVLSR--LLDGSF 133 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHH--HHHHh--ccCCCc
Confidence 46678899999999999999874 35899999999999999873 3466666 3521 11222 357899
Q ss_pred eeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961 101 DLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 101 D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
|+|+.... - +...+++.+.++|+ |||.+++
T Consensus 134 DliFIDad---K~~yp~~le~~~~lLr-~GGliv~ 164 (219)
T COG4122 134 DLVFIDAD---KADYPEYLERALPLLR-PGGLIVA 164 (219)
T ss_pred cEEEEeCC---hhhCHHHHHHHHHHhC-CCcEEEE
Confidence 99996421 2 45569999999999 9999998
No 168
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.75 E-value=1.8e-07 Score=77.26 Aligned_cols=100 Identities=22% Similarity=0.304 Sum_probs=79.5
Q ss_pred CeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961 35 NLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~ 106 (262)
..+||||||.|.+...+|+.. ..++|||+....+..|.+ ..|+.+.++|. ..+.+.-+++++.|-|..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA---~~~l~~~~~~~sl~~I~i~ 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDA---VEVLDYLIPDGSLDKIYIN 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCH---HHHHHhcCCCCCeeEEEEE
Confidence 588999999999999999974 479999999999887753 24888888771 2233333567799999999
Q ss_pred cccccC-C--------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 107 SALHWF-D--------LPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 107 ~~~~~~-d--------~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
+.=.|. . ...+++.+.++|+ |||.|.+-+-.
T Consensus 127 FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk-~gG~l~~aTD~ 166 (227)
T COG0220 127 FPDPWPKKRHHKRRLTQPEFLKLYARKLK-PGGVLHFATDN 166 (227)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcc-CCCEEEEEecC
Confidence 999888 3 2349999999999 99999985533
No 169
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.75 E-value=8.4e-08 Score=82.78 Aligned_cols=114 Identities=15% Similarity=0.092 Sum_probs=89.4
Q ss_pred CChHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhh
Q 037961 18 NYPKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITE 89 (262)
Q Consensus 18 ~yp~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~ 89 (262)
+.++.+...+.+.. .++..|||==||||.+.....-.|.+++|+|++..|++-++.+ ....+.. ..|
T Consensus 180 s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~-----~~D 254 (347)
T COG1041 180 SMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIEDYPVLK-----VLD 254 (347)
T ss_pred CcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCceeEEE-----ecc
Confidence 34677777776654 5778999999999999999988999999999999999999864 2222222 237
Q ss_pred hhhccCCCCceeeEEEccccc------cCC----hhHHHHHHHHhhcCCCeEEEEEec
Q 037961 90 LEQNVATQSSVDLVTIASALH------WFD----LPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 90 ~~~~~~~~~~~D~V~~~~~~~------~~d----~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
+..+|+++.++|.|++....- -.. ..++++.+.++|+ +||.+++|..
T Consensus 255 a~~lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk-~gG~~vf~~p 311 (347)
T COG1041 255 ATNLPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLK-PGGRIVFAAP 311 (347)
T ss_pred cccCCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhh-cCcEEEEecC
Confidence 888998888999999854432 122 4558999999999 9999999876
No 170
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=4.5e-08 Score=77.09 Aligned_cols=85 Identities=16% Similarity=0.214 Sum_probs=63.8
Q ss_pred CCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~ 106 (262)
.+.+|+|+|||||.++...+-.| ..|+|+|+++++++.++++ .++.+.++| +.+. ++.+|.|+.|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~d------v~~~---~~~~dtvimN 115 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVAD------VSDF---RGKFDTVIMN 115 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcc------hhhc---CCccceEEEC
Confidence 56789999999999999999888 4799999999999999975 357777765 3332 5679999998
Q ss_pred ccccc-C-C-hhHHHHHHHHhhc
Q 037961 107 SALHW-F-D-LPQFYKQVKWVLK 126 (262)
Q Consensus 107 ~~~~~-~-d-~~~~l~~~~r~Lk 126 (262)
..|-- . . -..++..+.++-+
T Consensus 116 PPFG~~~rhaDr~Fl~~Ale~s~ 138 (198)
T COG2263 116 PPFGSQRRHADRPFLLKALEISD 138 (198)
T ss_pred CCCccccccCCHHHHHHHHHhhh
Confidence 87752 2 2 2225555555533
No 171
>PLN02476 O-methyltransferase
Probab=98.73 E-value=9.9e-08 Score=80.90 Aligned_cols=98 Identities=14% Similarity=0.230 Sum_probs=71.4
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc--CCCCc
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV--ATQSS 99 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~ 99 (262)
.+..+|||+|+|+|..+..++.. ..+|+++|.+++..+.|+++ .++++..++... .+..+. -..++
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e--~L~~l~~~~~~~~ 194 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE--SLKSMIQNGEGSS 194 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH--HHHHHHhcccCCC
Confidence 35678999999999999999873 45799999999999999863 478888876111 111111 12468
Q ss_pred eeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 100 VDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 100 ~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
||+|+....= -+....++.+.++|+ |||.+++
T Consensus 195 FD~VFIDa~K--~~Y~~y~e~~l~lL~-~GGvIV~ 226 (278)
T PLN02476 195 YDFAFVDADK--RMYQDYFELLLQLVR-VGGVIVM 226 (278)
T ss_pred CCEEEECCCH--HHHHHHHHHHHHhcC-CCcEEEE
Confidence 9999965320 033457889999999 9999987
No 172
>PRK04148 hypothetical protein; Provisional
Probab=98.72 E-value=2.9e-07 Score=69.32 Aligned_cols=106 Identities=16% Similarity=0.087 Sum_probs=72.6
Q ss_pred HHHHHHHhhCC--CCCeEEEEcCcccH-hHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCC
Q 037961 22 ELFKLIASKTP--KRNLAWDVGTRSGQ-AAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQS 98 (262)
Q Consensus 22 ~~~~~l~~~~~--~~~~vlDvGcG~G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (262)
.+.++|..+.+ ++.++||||||+|. ++..|++.|.+|+++|+++..++.+++. .+.++.+|.+. .-+--..
T Consensus 3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~-----p~~~~y~ 76 (134)
T PRK04148 3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKL-GLNAFVDDLFN-----PNLEIYK 76 (134)
T ss_pred HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh-CCeEEECcCCC-----CCHHHHh
Confidence 45666666553 45779999999996 8889999999999999999999988875 56777776211 0001245
Q ss_pred ceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 99 SVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 99 ~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
.+|+|.+.. .+.....-+.++-++-|.-+++...+
T Consensus 77 ~a~liysir-----pp~el~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 77 NAKLIYSIR-----PPRDLQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred cCCEEEEeC-----CCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 689999743 34555555555555345566664443
No 173
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.72 E-value=1.8e-07 Score=78.15 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=77.8
Q ss_pred CChHHHHHHHHh-hCCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCc
Q 037961 18 NYPKELFKLIAS-KTPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMS 86 (262)
Q Consensus 18 ~yp~~~~~~l~~-~~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~ 86 (262)
-||+.+--.+.. -+.++.+|||.|.|+|.+|..|++. ..+|+..|..++.++.|+++ .++.+...|
T Consensus 24 iYpkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~D--- 100 (247)
T PF08704_consen 24 IYPKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRD--- 100 (247)
T ss_dssp --HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES----
T ss_pred eeCchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecc---
Confidence 577665443333 2479999999999999999999975 35899999999999999862 467777776
Q ss_pred hhhhhhccC---CCCceeeEEEccccccCChhHHHHHHHHhh-cCCCeEEEEEecCCC
Q 037961 87 ITELEQNVA---TQSSVDLVTIASALHWFDLPQFYKQVKWVL-KKPSGVIAAWTYTMP 140 (262)
Q Consensus 87 ~~~~~~~~~---~~~~~D~V~~~~~~~~~d~~~~l~~~~r~L-k~pgG~l~i~~~~~~ 140 (262)
+..-++ .+..+|.|+.... +|-.++..+.++| | |||.|++|...-.
T Consensus 101 ---v~~~g~~~~~~~~~DavfLDlp----~Pw~~i~~~~~~L~~-~gG~i~~fsP~ie 150 (247)
T PF08704_consen 101 ---VCEEGFDEELESDFDAVFLDLP----DPWEAIPHAKRALKK-PGGRICCFSPCIE 150 (247)
T ss_dssp ---GGCG--STT-TTSEEEEEEESS----SGGGGHHHHHHHE-E-EEEEEEEEESSHH
T ss_pred ---eecccccccccCcccEEEEeCC----CHHHHHHHHHHHHhc-CCceEEEECCCHH
Confidence 211112 1367999996533 6668999999999 8 9999999876543
No 174
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.69 E-value=7.5e-08 Score=78.44 Aligned_cols=105 Identities=18% Similarity=0.295 Sum_probs=74.0
Q ss_pred HHHHHhhCCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhc
Q 037961 24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQN 93 (262)
Q Consensus 24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~ 93 (262)
+..+... .+..+||||||++|..+..++.. ..+|+.+|+++.+.+.|++. .+++++.++... -+..+
T Consensus 37 L~~l~~~-~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~--~l~~l 113 (205)
T PF01596_consen 37 LQMLVRL-TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALE--VLPEL 113 (205)
T ss_dssp HHHHHHH-HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHH--HHHHH
T ss_pred HHHHHHh-cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHh--hHHHH
Confidence 3334333 35568899999999999999974 57999999999999999752 478888887110 11111
Q ss_pred c--CCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 94 V--ATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 94 ~--~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
. -+.++||+|+....= -+....+..+.++|+ |||.+++
T Consensus 114 ~~~~~~~~fD~VFiDa~K--~~y~~y~~~~~~ll~-~ggvii~ 153 (205)
T PF01596_consen 114 ANDGEEGQFDFVFIDADK--RNYLEYFEKALPLLR-PGGVIIA 153 (205)
T ss_dssp HHTTTTTSEEEEEEESTG--GGHHHHHHHHHHHEE-EEEEEEE
T ss_pred HhccCCCceeEEEEcccc--cchhhHHHHHhhhcc-CCeEEEE
Confidence 1 124689999975421 134457888999999 9999998
No 175
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.68 E-value=1.3e-07 Score=83.86 Aligned_cols=121 Identities=12% Similarity=0.118 Sum_probs=85.6
Q ss_pred HHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhccCC
Q 037961 26 LIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQNVAT 96 (262)
Q Consensus 26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~ 96 (262)
.+..... +.+||++-|=||.++...+..|+ +|+.||.|...++.|+++ ..+.++++|.+.. ++..--.
T Consensus 211 ~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~--l~~~~~~ 287 (393)
T COG1092 211 ALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKW--LRKAERR 287 (393)
T ss_pred HHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHH--HHHHHhc
Confidence 3444445 88999999999999999999998 999999999999999863 3467777762211 2222223
Q ss_pred CCceeeEEEccccc---------cC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhh
Q 037961 97 QSSVDLVTIASALH---------WF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVF 150 (262)
Q Consensus 97 ~~~~D~V~~~~~~~---------~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~ 150 (262)
..+||+|+....-. -. |...++..+.++|+ |||+++++++....-...+.++.
T Consensus 288 g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~-pgG~l~~~s~~~~~~~~~f~~~i 350 (393)
T COG1092 288 GEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLA-PGGTLVTSSCSRHFSSDLFLEII 350 (393)
T ss_pred CCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcC-CCCEEEEEecCCccCHHHHHHHH
Confidence 45899999843221 12 45557889999999 99999997766443334444433
No 176
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.68 E-value=1.1e-07 Score=80.84 Aligned_cols=92 Identities=24% Similarity=0.235 Sum_probs=68.9
Q ss_pred CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVT 104 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~ 104 (262)
.++.|||+|||+|.++...++.|+ +|.+++.| +|.++|+++ .+|.++.+ .+|++.+| ++.|+|+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~G------KiEdieLP-Ek~DviI 248 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPG------KIEDIELP-EKVDVII 248 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccC------ccccccCc-hhccEEE
Confidence 678999999999999999999875 79999998 899999874 45566654 46666544 5799999
Q ss_pred EccccccCChhH---HHHHHHHhhcCCCeEEE
Q 037961 105 IASALHWFDLPQ---FYKQVKWVLKKPSGVIA 133 (262)
Q Consensus 105 ~~~~~~~~d~~~---~l~~~~r~Lk~pgG~l~ 133 (262)
+-..=..+=-+. ..-.+++.|+ |.|...
T Consensus 249 SEPMG~mL~NERMLEsYl~Ark~l~-P~GkMf 279 (517)
T KOG1500|consen 249 SEPMGYMLVNERMLESYLHARKWLK-PNGKMF 279 (517)
T ss_pred eccchhhhhhHHHHHHHHHHHhhcC-CCCccc
Confidence 754433332233 3446779999 999876
No 177
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.67 E-value=5.9e-08 Score=77.73 Aligned_cols=119 Identities=15% Similarity=0.140 Sum_probs=82.0
Q ss_pred hhCCCC---hHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeC
Q 037961 14 VARPNY---PKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLT 82 (262)
Q Consensus 14 ~~rp~y---p~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~ 82 (262)
..||+- -+.++++|....-++.++||+-||||..+...+++|+ +|+.||.++..++..+++ .++..+..
T Consensus 20 ~~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~ 99 (183)
T PF03602_consen 20 NTRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKG 99 (183)
T ss_dssp TS-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEES
T ss_pred CcCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeecc
Confidence 467765 3567888876623678899999999999999999985 899999999999988763 24666666
Q ss_pred CCCchhhhhhccCCCCceeeEEEccccccCC-hhHHHHHHH--HhhcCCCeEEEEE
Q 037961 83 PTMSITELEQNVATQSSVDLVTIASALHWFD-LPQFYKQVK--WVLKKPSGVIAAW 135 (262)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d-~~~~l~~~~--r~Lk~pgG~l~i~ 135 (262)
|.. ..+........+||+|++......-. ..++++.+. .+|+ ++|.+++=
T Consensus 100 d~~--~~l~~~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~-~~~~ii~E 152 (183)
T PF03602_consen 100 DAF--KFLLKLAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLN-EDGLIIIE 152 (183)
T ss_dssp SHH--HHHHHHHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEE-EEEEEEEE
T ss_pred CHH--HHHHhhcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCC-CCEEEEEE
Confidence 511 11222222468899999998887765 377888887 7899 89999883
No 178
>PRK00536 speE spermidine synthase; Provisional
Probab=98.65 E-value=3.2e-07 Score=77.25 Aligned_cols=102 Identities=18% Similarity=0.061 Sum_probs=78.3
Q ss_pred ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc-C---------CCceEEeCCCCchh
Q 037961 19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK-L---------PNIRYQLTPTMSIT 88 (262)
Q Consensus 19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~---------~~~~~~~~~~~~~~ 88 (262)
|.+.+..--+-.++...+||=+|-|.|..++.++++-.+|+.||+++.+++.+++ + |+++....
T Consensus 58 YHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~------ 131 (262)
T PRK00536 58 ESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ------ 131 (262)
T ss_pred HHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh------
Confidence 4444444444455778999999999999999999987799999999999999997 2 34444321
Q ss_pred hhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 89 ELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 89 ~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+.+ ...++||+|++... +.+.+++.+.|.|+ |||.++.
T Consensus 132 -~~~--~~~~~fDVIIvDs~----~~~~fy~~~~~~L~-~~Gi~v~ 169 (262)
T PRK00536 132 -LLD--LDIKKYDLIICLQE----PDIHKIDGLKRMLK-EDGVFIS 169 (262)
T ss_pred -hhh--ccCCcCCEEEEcCC----CChHHHHHHHHhcC-CCcEEEE
Confidence 111 12368999998753 55789999999999 9999998
No 179
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.64 E-value=4.8e-07 Score=76.35 Aligned_cols=101 Identities=21% Similarity=0.300 Sum_probs=68.7
Q ss_pred CCCeEEEEcCcccH----hHHHHHhh-------CCeEEEEcCCHHHHHHHhcC--C---------------------Cce
Q 037961 33 KRNLAWDVGTRSGQ----AAASLAQI-------YQHVIATDTSPKQLKFAIKL--P---------------------NIR 78 (262)
Q Consensus 33 ~~~~vlDvGcG~G~----~~~~l~~~-------~~~v~~vD~s~~~~~~a~~~--~---------------------~~~ 78 (262)
..-+|+-+||+||. .++.|.+. ..+|+|+|+|...++.|+.- + .-.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 36789999999994 34444442 35799999999999999851 1 001
Q ss_pred EEeCC------CCchhhhhhccCCCCceeeEEEccccccCChh---HHHHHHHHhhcCCCeEEEE
Q 037961 79 YQLTP------TMSITELEQNVATQSSVDLVTIASALHWFDLP---QFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 79 ~~~~~------~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~---~~l~~~~r~Lk~pgG~l~i 134 (262)
+...+ .+...++-+-.+..+.||+|+|-+++-++|.+ +++..++..|+ |||.|.+
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~-~gG~Lfl 239 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLK-PGGLLFL 239 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhC-CCCEEEE
Confidence 11111 01111222222145679999999999999643 39999999999 9999998
No 180
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=2.2e-07 Score=74.25 Aligned_cols=102 Identities=17% Similarity=0.223 Sum_probs=79.9
Q ss_pred HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHh----hCCeEEEEcCCHHHHHHHhcC----------------CCceEE
Q 037961 21 KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQ----IYQHVIATDTSPKQLKFAIKL----------------PNIRYQ 80 (262)
Q Consensus 21 ~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~~----------------~~~~~~ 80 (262)
..+++.|..++.++...||+|.|+|.++..++. .|...+|||.-++.++.++++ .+..++
T Consensus 70 a~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~iv 149 (237)
T KOG1661|consen 70 ATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIV 149 (237)
T ss_pred HHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEE
Confidence 566888888888999999999999999998875 355669999999999998863 244555
Q ss_pred eCCCCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 81 LTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
++| ....-.+..+||.|.+.- +..+.-+++...|+ |||.+++
T Consensus 150 vGD------gr~g~~e~a~YDaIhvGA-----aa~~~pq~l~dqL~-~gGrlli 191 (237)
T KOG1661|consen 150 VGD------GRKGYAEQAPYDAIHVGA-----AASELPQELLDQLK-PGGRLLI 191 (237)
T ss_pred eCC------ccccCCccCCcceEEEcc-----CccccHHHHHHhhc-cCCeEEE
Confidence 555 223223677899999873 44667888999999 9999998
No 181
>PLN02672 methionine S-methyltransferase
Probab=98.61 E-value=2e-07 Score=91.79 Aligned_cols=94 Identities=15% Similarity=0.197 Sum_probs=67.8
Q ss_pred CCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC----------------------CCceEEeCCCCchhh
Q 037961 34 RNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL----------------------PNIRYQLTPTMSITE 89 (262)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------------------~~~~~~~~~~~~~~~ 89 (262)
+.+|||+|||+|..+..++..+ .+|+|+|+|+.+++.|+++ .+++++.+|
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sD------ 192 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESD------ 192 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECc------
Confidence 3589999999999999999864 5899999999999998642 136666665
Q ss_pred hhhccCC-CCceeeEEEcccc----------------------c----cC--Ch-----------hHHHHHHHHhhcCCC
Q 037961 90 LEQNVAT-QSSVDLVTIASAL----------------------H----WF--DL-----------PQFYKQVKWVLKKPS 129 (262)
Q Consensus 90 ~~~~~~~-~~~~D~V~~~~~~----------------------~----~~--d~-----------~~~l~~~~r~Lk~pg 129 (262)
+.+.... ..+||+|++|..- | +. +- .+++.++.++|+ ||
T Consensus 193 l~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~-pg 271 (1082)
T PLN02672 193 LLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIK-PM 271 (1082)
T ss_pred hhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhcc-CC
Confidence 2111111 2369999996441 1 11 11 446788889999 99
Q ss_pred eEEEE
Q 037961 130 GVIAA 134 (262)
Q Consensus 130 G~l~i 134 (262)
|.+++
T Consensus 272 G~l~l 276 (1082)
T PLN02672 272 GIMIF 276 (1082)
T ss_pred CEEEE
Confidence 99987
No 182
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.61 E-value=4.6e-07 Score=76.07 Aligned_cols=111 Identities=21% Similarity=0.241 Sum_probs=79.6
Q ss_pred ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCc
Q 037961 19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMS 86 (262)
Q Consensus 19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~ 86 (262)
|.+.+...-+-..++..+||=||-|.|..++.+.++. .+|++||+++.+++.+++. ++++++.+|
T Consensus 62 y~e~l~h~~~~~~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~D--- 138 (246)
T PF01564_consen 62 YHEMLVHPPLLLHPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGD--- 138 (246)
T ss_dssp HHHHHHHHHHHHSSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEEST---
T ss_pred HHHHHhhhHhhcCCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhh---
Confidence 3344444444455678899999999999999998875 6899999999999999862 577888776
Q ss_pred hhhhhh-ccCCCC-ceeeEEEccccccC-----ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 87 ITELEQ-NVATQS-SVDLVTIASALHWF-----DLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 87 ~~~~~~-~~~~~~-~~D~V~~~~~~~~~-----d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
+.. +.-... +||+|+....-... =...+++.+.+.|+ |||+++++.
T Consensus 139 ---g~~~l~~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~-~~Gv~v~~~ 191 (246)
T PF01564_consen 139 ---GRKFLKETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLK-PDGVLVLQA 191 (246)
T ss_dssp ---HHHHHHTSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ---hHHHHHhccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcC-CCcEEEEEc
Confidence 211 111233 89999975443222 13569999999999 999999976
No 183
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.56 E-value=1.2e-06 Score=72.81 Aligned_cols=113 Identities=20% Similarity=0.200 Sum_probs=78.1
Q ss_pred HHHHHHHHhhCC-----CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCC-CC
Q 037961 21 KELFKLIASKTP-----KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTP-TM 85 (262)
Q Consensus 21 ~~~~~~l~~~~~-----~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~-~~ 85 (262)
+++++++.+.+. ....+||+|||+|..+..++.. -..++|+|.|+..+..|.++ ..+.++..+ +.
T Consensus 131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~ 210 (328)
T KOG2904|consen 131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES 210 (328)
T ss_pred HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence 667777766553 4457999999999999998875 45799999999999988753 455555433 11
Q ss_pred chhhhhhccCCCCceeeEEEccccccC-C--------------------------hhHHHHHHHHhhcCCCeEEEEEe
Q 037961 86 SITELEQNVATQSSVDLVTIASALHWF-D--------------------------LPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 86 ~~~~~~~~~~~~~~~D~V~~~~~~~~~-d--------------------------~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
......+...+++|++++|...--- | .-.++.-+-|.|+ |||.+.+-.
T Consensus 211 --d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq-~gg~~~le~ 285 (328)
T KOG2904|consen 211 --DASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQ-PGGFEQLEL 285 (328)
T ss_pred --ccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcc-cCCeEEEEe
Confidence 1122334567999999997553211 1 1124557789999 999998833
No 184
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.56 E-value=5.5e-07 Score=75.37 Aligned_cols=97 Identities=15% Similarity=0.280 Sum_probs=70.4
Q ss_pred CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc---CCCCc
Q 037961 33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV---ATQSS 99 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~---~~~~~ 99 (262)
+..+|||+|+++|..|..++.. ..+|+++|.+++..+.|++. .+|+++.++.. ..+..+. -..++
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~--e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPAL--PVLDQMIEDGKYHGT 156 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHH--HHHHHHHhccccCCc
Confidence 4567899999999999999864 56899999999999998752 57888887611 0111111 01368
Q ss_pred eeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 100 VDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 100 ~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
||+|+.... --.....++.+.++|+ |||.+++
T Consensus 157 fD~iFiDad--K~~Y~~y~~~~l~ll~-~GGviv~ 188 (247)
T PLN02589 157 FDFIFVDAD--KDNYINYHKRLIDLVK-VGGVIGY 188 (247)
T ss_pred ccEEEecCC--HHHhHHHHHHHHHhcC-CCeEEEE
Confidence 999996522 1133447888899999 9999987
No 185
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.55 E-value=1.8e-07 Score=82.68 Aligned_cols=119 Identities=12% Similarity=0.131 Sum_probs=75.5
Q ss_pred HHHHHHHHhhCC-CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhc
Q 037961 21 KELFKLIASKTP-KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQN 93 (262)
Q Consensus 21 ~~~~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~ 93 (262)
+.+++.+.+... .+..|||++||+|.++..+++...+|+|+|+++.+++.|+++ .++++..++.... ....
T Consensus 184 ~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~--~~~~ 261 (353)
T TIGR02143 184 IKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEF--TQAM 261 (353)
T ss_pred HHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHH--HHHH
Confidence 455666666553 234699999999999999999888999999999999999863 3677887761110 0100
Q ss_pred ----cC---C-----CCceeeEEEccccccCChhH--HHHHH-HHhhcCCCeEEEEEecCCCcccHHHHHhh
Q 037961 94 ----VA---T-----QSSVDLVTIASALHWFDLPQ--FYKQV-KWVLKKPSGVIAAWTYTMPEINESVGAVF 150 (262)
Q Consensus 94 ----~~---~-----~~~~D~V~~~~~~~~~d~~~--~l~~~-~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~ 150 (262)
.+ . ...||+|+. ||+. +..++ ..+++ |++.+++ .+++..+.+.+..+.
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~v~l-------DPPR~G~~~~~l~~l~~-~~~ivYv-sC~p~tlaRDl~~L~ 324 (353)
T TIGR02143 262 NGVREFRRLKGIDLKSYNCSTIFV-------DPPRAGLDPDTCKLVQA-YERILYI-SCNPETLKANLEQLS 324 (353)
T ss_pred hhccccccccccccccCCCCEEEE-------CCCCCCCcHHHHHHHHc-CCcEEEE-EcCHHHHHHHHHHHh
Confidence 00 0 123788875 4433 33344 33446 7777776 444445555555544
No 186
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.54 E-value=3.9e-07 Score=75.58 Aligned_cols=82 Identities=13% Similarity=0.172 Sum_probs=63.4
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhh
Q 037961 21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELE 91 (262)
Q Consensus 21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~ 91 (262)
+.+++.|.... ++...|||||.|||.+|..|.+.++.|+|+|+++.|+....++ ...+++.+|.+
T Consensus 44 p~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~l------ 117 (315)
T KOG0820|consen 44 PLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFL------ 117 (315)
T ss_pred HHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccc------
Confidence 44556665543 5889999999999999999999999999999999999987753 45677776622
Q ss_pred hccCCCCceeeEEEccccc
Q 037961 92 QNVATQSSVDLVTIASALH 110 (262)
Q Consensus 92 ~~~~~~~~~D~V~~~~~~~ 110 (262)
.. +...||.++++...+
T Consensus 118 K~--d~P~fd~cVsNlPyq 134 (315)
T KOG0820|consen 118 KT--DLPRFDGCVSNLPYQ 134 (315)
T ss_pred cC--CCcccceeeccCCcc
Confidence 22 345699999976554
No 187
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.54 E-value=4.3e-08 Score=78.03 Aligned_cols=93 Identities=19% Similarity=0.207 Sum_probs=74.5
Q ss_pred CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF 112 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~ 112 (262)
.+.++||+|+|.|..|..+++.+.+|.+++.|..|..+.++. +.+++..- ++.-.+-++|+|.|.+.+.-.
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk-~ynVl~~~--------ew~~t~~k~dli~clNlLDRc 182 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK-NYNVLTEI--------EWLQTDVKLDLILCLNLLDRC 182 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc-CCceeeeh--------hhhhcCceeehHHHHHHHHhh
Confidence 346899999999999999999999999999999999988764 33333221 111134579999999999866
Q ss_pred -ChhHHHHHHHHhhcCCCeEEEE
Q 037961 113 -DLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 113 -d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
++-+.++.+..+|++.+|.+++
T Consensus 183 ~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 183 FDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred cChHHHHHHHHHHhccCCCcEEE
Confidence 9999999999999933888776
No 188
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.54 E-value=2.7e-07 Score=73.89 Aligned_cols=104 Identities=24% Similarity=0.236 Sum_probs=63.8
Q ss_pred CCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcCCCceEEeCCCCc---hhhhhhcc-CCCCceeeEEE
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKLPNIRYQLTPTMS---ITELEQNV-ATQSSVDLVTI 105 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~D~V~~ 105 (262)
+..+|||+||++|.++..+.+++ .+|+|+|+.+. ...+++..+.+|... ...+.... -...++|+|+|
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dlv~~ 97 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDLVLS 97 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESEEEE
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----ccccceeeeecccchhhHHHhhhhhccccccCcceecc
Confidence 45899999999999999999987 79999999976 233455555555111 11222211 12368999999
Q ss_pred ccccccC-----Chh-------HHHHHHHHhhcCCCeEEEEEecCCCcc
Q 037961 106 ASALHWF-----DLP-------QFYKQVKWVLKKPSGVIAAWTYTMPEI 142 (262)
Q Consensus 106 ~~~~~~~-----d~~-------~~l~~~~r~Lk~pgG~l~i~~~~~~~~ 142 (262)
..+.... |.. ..+.-+.+.|+ |||.+++-.+.....
T Consensus 98 D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~-~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 98 DMAPNVSGDRNIDEFISIRLILSQLLLALELLK-PGGTFVIKVFKGPEI 145 (181)
T ss_dssp -------SSHHSSHHHHHHHHHHHHHHHHHHHC-TTEEEEEEESSSTTS
T ss_pred ccccCCCCchhhHHHHHHHHHHHHHHHHHhhhc-CCCEEEEEeccCccH
Confidence 8754432 211 14455667799 999999866554443
No 189
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.53 E-value=2.2e-07 Score=75.35 Aligned_cols=101 Identities=19% Similarity=0.172 Sum_probs=78.2
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhc--cCCCCce
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQN--VATQSSV 100 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~--~~~~~~~ 100 (262)
+.+.+|||.+.|-|..+...+++|+ +|+.++.+|..++.|+-+ .++..+.+| +.+. .+++.+|
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD------~~e~V~~~~D~sf 206 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGD------AYEVVKDFDDESF 206 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEeccc------HHHHHhcCCcccc
Confidence 3688999999999999999999999 999999999999988754 356777665 3221 2589999
Q ss_pred eeEEEccccccC----ChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961 101 DLVTIASALHWF----DLPQFYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 101 D~V~~~~~~~~~----d~~~~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
|.|+-...=.-. =-+.+..|++|+|| |||.+.-+.-.+
T Consensus 207 DaIiHDPPRfS~AgeLYseefY~El~RiLk-rgGrlFHYvG~P 248 (287)
T COG2521 207 DAIIHDPPRFSLAGELYSEEFYRELYRILK-RGGRLFHYVGNP 248 (287)
T ss_pred ceEeeCCCccchhhhHhHHHHHHHHHHHcC-cCCcEEEEeCCC
Confidence 999863222111 23558999999999 999998866544
No 190
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.52 E-value=2.4e-07 Score=82.16 Aligned_cols=123 Identities=11% Similarity=0.089 Sum_probs=76.4
Q ss_pred hHHHHHHHHhhCC-CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCc-hhhhh
Q 037961 20 PKELFKLIASKTP-KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMS-ITELE 91 (262)
Q Consensus 20 p~~~~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~-~~~~~ 91 (262)
.+.+++.+.+... ....+||++||+|.++..+++...+|+|+|.++.+++.++++ .++++..+|... +....
T Consensus 192 ~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~ 271 (362)
T PRK05031 192 NEKMLEWALDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMN 271 (362)
T ss_pred HHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh
Confidence 3567777777654 235699999999999999998888999999999999998863 367788877111 01110
Q ss_pred hcc-C--------CCCceeeEEEccccccCChhHHHHHH-HHhhcCCCeEEEEEecCCCcccHHHHHh
Q 037961 92 QNV-A--------TQSSVDLVTIASALHWFDLPQFYKQV-KWVLKKPSGVIAAWTYTMPEINESVGAV 149 (262)
Q Consensus 92 ~~~-~--------~~~~~D~V~~~~~~~~~d~~~~l~~~-~r~Lk~pgG~l~i~~~~~~~~~~~~~~~ 149 (262)
... + ...+||+|+....- . .+..++ ..+.+ |++.+++.+ ++..+.+.+..+
T Consensus 272 ~~~~~~~~~~~~~~~~~~D~v~lDPPR--~---G~~~~~l~~l~~-~~~ivyvSC-~p~tlarDl~~L 332 (362)
T PRK05031 272 GVREFNRLKGIDLKSYNFSTIFVDPPR--A---GLDDETLKLVQA-YERILYISC-NPETLCENLETL 332 (362)
T ss_pred hcccccccccccccCCCCCEEEECCCC--C---CCcHHHHHHHHc-cCCEEEEEe-CHHHHHHHHHHH
Confidence 000 0 02258999964431 1 133344 33345 777766633 333443444444
No 191
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.52 E-value=1.2e-06 Score=74.72 Aligned_cols=96 Identities=16% Similarity=0.286 Sum_probs=74.5
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC----------CCceEEeCCCCchhhhhhc-cCCCC
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL----------PNIRYQLTPTMSITELEQN-VATQS 98 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~ 98 (262)
+...+||-+|-|.|..++.+.++. .+++.||+++..++.+++. ++++.+.+| +-.+ .-...
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~D------g~~~v~~~~~ 148 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDD------GVEFLRDCEE 148 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEecc------HHHHHHhCCC
Confidence 444699999999999999999985 6999999999999999973 445555554 3222 21234
Q ss_pred ceeeEEEccccccCC------hhHHHHHHHHhhcCCCeEEEEE
Q 037961 99 SVDLVTIASALHWFD------LPQFYKQVKWVLKKPSGVIAAW 135 (262)
Q Consensus 99 ~~D~V~~~~~~~~~d------~~~~l~~~~r~Lk~pgG~l~i~ 135 (262)
+||+|++...=. .. ...+++.|.++|+ ++|+++..
T Consensus 149 ~fDvIi~D~tdp-~gp~~~Lft~eFy~~~~~~L~-~~Gi~v~q 189 (282)
T COG0421 149 KFDVIIVDSTDP-VGPAEALFTEEFYEGCRRALK-EDGIFVAQ 189 (282)
T ss_pred cCCEEEEcCCCC-CCcccccCCHHHHHHHHHhcC-CCcEEEEe
Confidence 899999875544 22 3679999999999 99999986
No 192
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.2e-06 Score=70.61 Aligned_cols=103 Identities=20% Similarity=0.188 Sum_probs=71.8
Q ss_pred CCCCCeEEEEcCcccHhHHHHHhhCC---eEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhc--cCCCCceeeEEE
Q 037961 31 TPKRNLAWDVGTRSGQAAASLAQIYQ---HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQN--VATQSSVDLVTI 105 (262)
Q Consensus 31 ~~~~~~vlDvGcG~G~~~~~l~~~~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~V~~ 105 (262)
+.++.+|+|+||-+|.+++.+++... .|+|+|+.|- ...+++.++++|.......+.+ -+...++|+|++
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~s 117 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----KPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLS 117 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----ccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEe
Confidence 46889999999999999999988632 4999999854 3457899999881111222222 135566899997
Q ss_pred cccc----ccC-Chh-------HHHHHHHHhhcCCCeEEEEEecCC
Q 037961 106 ASAL----HWF-DLP-------QFYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 106 ~~~~----~~~-d~~-------~~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
..+- +|. |.. .++.-+..+|+ |||.+++-.+..
T Consensus 118 D~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~-~~G~fv~K~fqg 162 (205)
T COG0293 118 DMAPNTSGNRSVDHARSMYLCELALEFALEVLK-PGGSFVAKVFQG 162 (205)
T ss_pred cCCCCcCCCccccHHHHHHHHHHHHHHHHHeeC-CCCeEEEEEEeC
Confidence 5443 333 432 25667778999 999999844443
No 193
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.45 E-value=2.8e-07 Score=81.13 Aligned_cols=108 Identities=19% Similarity=0.234 Sum_probs=84.3
Q ss_pred HHhhCCCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceeeEE
Q 037961 27 IASKTPKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVT 104 (262)
Q Consensus 27 l~~~~~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~V~ 104 (262)
+.....++..++|+|||.|.....++.. .+.++|+|.++..+..+.....-..+... .+.+.++..-|++++.||.|.
T Consensus 104 l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~ 183 (364)
T KOG1269|consen 104 LRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVR 183 (364)
T ss_pred HhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEE
Confidence 3333456667899999999999999886 58999999999998877643110111111 112356777889999999999
Q ss_pred EccccccC-ChhHHHHHHHHhhcCCCeEEEEE
Q 037961 105 IASALHWF-DLPQFYKQVKWVLKKPSGVIAAW 135 (262)
Q Consensus 105 ~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~ 135 (262)
+..+..+. +...+++|++|+++ |||.+++.
T Consensus 184 ~ld~~~~~~~~~~~y~Ei~rv~k-pGG~~i~~ 214 (364)
T KOG1269|consen 184 FLEVVCHAPDLEKVYAEIYRVLK-PGGLFIVK 214 (364)
T ss_pred EEeecccCCcHHHHHHHHhcccC-CCceEEeH
Confidence 99999999 99999999999999 99999983
No 194
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.45 E-value=9.5e-07 Score=71.56 Aligned_cols=98 Identities=17% Similarity=0.194 Sum_probs=67.3
Q ss_pred HHHHhhCCCCCeEEEEcCcccHhHHHHHh--hCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccC
Q 037961 25 KLIASKTPKRNLAWDVGTRSGQAAASLAQ--IYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVA 95 (262)
Q Consensus 25 ~~l~~~~~~~~~vlDvGcG~G~~~~~l~~--~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~ 95 (262)
..+.....++.+|+|+.||.|.++..+++ .++.|+++|++|..++.+++. ..+....+| +.....
T Consensus 93 ~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D------~~~~~~ 166 (200)
T PF02475_consen 93 RRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGD------AREFLP 166 (200)
T ss_dssp HHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-------GGG---
T ss_pred HHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCC------HHHhcC
Confidence 35666678899999999999999999998 578899999999999988752 345566654 444432
Q ss_pred CCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEE
Q 037961 96 TQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIA 133 (262)
Q Consensus 96 ~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~ 133 (262)
.+.+|.|+++..- ....++..+.++++ +||++-
T Consensus 167 -~~~~drvim~lp~---~~~~fl~~~~~~~~-~~g~ih 199 (200)
T PF02475_consen 167 -EGKFDRVIMNLPE---SSLEFLDAALSLLK-EGGIIH 199 (200)
T ss_dssp -TT-EEEEEE--TS---SGGGGHHHHHHHEE-EEEEEE
T ss_pred -ccccCEEEECChH---HHHHHHHHHHHHhc-CCcEEE
Confidence 7889999987542 22358888999999 898763
No 195
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.43 E-value=2.4e-06 Score=65.14 Aligned_cols=94 Identities=24% Similarity=0.307 Sum_probs=68.0
Q ss_pred EEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcCC---C---ceEEeCCCCchhhhh--hccCCC-CceeeEE
Q 037961 37 AWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKLP---N---IRYQLTPTMSITELE--QNVATQ-SSVDLVT 104 (262)
Q Consensus 37 vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~---~---~~~~~~~~~~~~~~~--~~~~~~-~~~D~V~ 104 (262)
++|+|||+|..+ .+... +..++++|+++.++..++... . +.+...+ .. ..++.. ..||++.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~d~~~ 124 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVAD------ALGGVLPFEDSASFDLVI 124 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEec------cccCCCCCCCCCceeEEe
Confidence 899999999976 33333 348999999999999855321 1 3455443 22 245555 4899995
Q ss_pred EccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
+....++.+....+.++.++|+ |+|.+++....
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~ 157 (257)
T COG0500 125 SLLVLHLLPPAKALRELLRVLK-PGGRLVLSDLL 157 (257)
T ss_pred eeeehhcCCHHHHHHHHHHhcC-CCcEEEEEecc
Confidence 5555566687889999999999 99999885544
No 196
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.42 E-value=7.1e-07 Score=77.38 Aligned_cols=77 Identities=16% Similarity=0.208 Sum_probs=54.2
Q ss_pred CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC----C----CceEEe-CCCCchhhh-hhccCCCCce
Q 037961 33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL----P----NIRYQL-TPTMSITEL-EQNVATQSSV 100 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----~----~~~~~~-~~~~~~~~~-~~~~~~~~~~ 100 (262)
...++||||||+|.....++.+ +.+++|+|+++.+++.|+++ + .+.+.. .+. .++ .....+.+.|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~---~~i~~~i~~~~~~f 190 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDS---KAIFKGIIHKNERF 190 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccch---hhhhhcccccCCce
Confidence 4578999999999887777654 77999999999999999853 2 234432 110 111 1111246789
Q ss_pred eeEEEccccccC
Q 037961 101 DLVTIASALHWF 112 (262)
Q Consensus 101 D~V~~~~~~~~~ 112 (262)
|+|+|+..+|--
T Consensus 191 DlivcNPPf~~s 202 (321)
T PRK11727 191 DATLCNPPFHAS 202 (321)
T ss_pred EEEEeCCCCcCc
Confidence 999999998865
No 197
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=2e-06 Score=72.03 Aligned_cols=83 Identities=10% Similarity=0.017 Sum_probs=63.5
Q ss_pred HHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----CCceEEeCCCCchhhhhhccC
Q 037961 22 ELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSITELEQNVA 95 (262)
Q Consensus 22 ~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~ 95 (262)
.+++.|.... .++..|||||+|.|.+|..|++++.+|+++|+++.+++..++. .+++.+.+| +-...+
T Consensus 17 ~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~D------aLk~d~ 90 (259)
T COG0030 17 NVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGD------ALKFDF 90 (259)
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCc------hhcCcc
Confidence 4456666554 3578999999999999999999999999999999999998864 678888877 222222
Q ss_pred CCC-ceeeEEEccccc
Q 037961 96 TQS-SVDLVTIASALH 110 (262)
Q Consensus 96 ~~~-~~D~V~~~~~~~ 110 (262)
+.- .++.|+++...+
T Consensus 91 ~~l~~~~~vVaNlPY~ 106 (259)
T COG0030 91 PSLAQPYKVVANLPYN 106 (259)
T ss_pred hhhcCCCEEEEcCCCc
Confidence 221 578888876654
No 198
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.38 E-value=2.1e-06 Score=76.49 Aligned_cols=108 Identities=16% Similarity=0.155 Sum_probs=75.3
Q ss_pred CChHHHHHHHHhhCC---CCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCc
Q 037961 18 NYPKELFKLIASKTP---KRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMS 86 (262)
Q Consensus 18 ~yp~~~~~~l~~~~~---~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~ 86 (262)
.....+...+..... +..+|||++||+|..+..++... .+|+++|+++..++.++++ .++.+..+
T Consensus 39 ~~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~---- 114 (382)
T PRK04338 39 ELNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNK---- 114 (382)
T ss_pred cchhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhh----
Confidence 334455555544433 23589999999999999998753 3899999999999988753 23445544
Q ss_pred hhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961 87 ITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAW 135 (262)
Q Consensus 87 ~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~ 135 (262)
|+..+....+.||+|+.... =.+..++..+.+.++ +||.+.+.
T Consensus 115 --Da~~~l~~~~~fD~V~lDP~---Gs~~~~l~~al~~~~-~~gilyvS 157 (382)
T PRK04338 115 --DANALLHEERKFDVVDIDPF---GSPAPFLDSAIRSVK-RGGLLCVT 157 (382)
T ss_pred --hHHHHHhhcCCCCEEEECCC---CCcHHHHHHHHHHhc-CCCEEEEE
Confidence 34433211457999998641 234678888888899 99999995
No 199
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.34 E-value=3.3e-06 Score=78.07 Aligned_cols=101 Identities=16% Similarity=0.168 Sum_probs=78.0
Q ss_pred CCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNVATQSSVDLVT 104 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~ 104 (262)
....+||||||.|.++..+|... ..++|+|++..-+..+.+ ..|+.+..++ ...+... ++++++|.|+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~---~~~~~~~-~~~~sv~~i~ 422 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNN---LDLILND-LPNNSLDGIY 422 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCC---HHHHHHh-cCcccccEEE
Confidence 56788999999999999999874 579999999998776542 3566666554 1112222 5789999999
Q ss_pred EccccccC-C--------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 105 IASALHWF-D--------LPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 105 ~~~~~~~~-d--------~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
.++.=.|. . ...+++.+.++|+ |||.|.+.+-.
T Consensus 423 i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk-~gG~i~~~TD~ 464 (506)
T PRK01544 423 ILFPDPWIKNKQKKKRIFNKERLKILQDKLK-DNGNLVFASDI 464 (506)
T ss_pred EECCCCCCCCCCccccccCHHHHHHHHHhcC-CCCEEEEEcCC
Confidence 99999887 2 2348999999999 99999985543
No 200
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=98.34 E-value=2.3e-06 Score=73.79 Aligned_cols=94 Identities=23% Similarity=0.257 Sum_probs=76.8
Q ss_pred CCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHh-cC-CCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961 34 RNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAI-KL-PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW 111 (262)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~ 111 (262)
...++|+|.|.|..+..+...+.+|-+++++...+-.+. .. ++|+.+.++- +.++ |. -|+|++-+++|+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdm-----fq~~--P~--~daI~mkWiLhd 248 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDM-----FQDT--PK--GDAIWMKWILHD 248 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccc-----cccC--CC--cCeEEEEeeccc
Confidence 578999999999999999999899999999998887655 45 7788887761 2333 33 369999999985
Q ss_pred C---ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 112 F---DLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 112 ~---d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
. |..+++++|+..|+ |||.+++...
T Consensus 249 wtDedcvkiLknC~~sL~-~~GkIiv~E~ 276 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLP-PGGKIIVVEN 276 (342)
T ss_pred CChHHHHHHHHHHHHhCC-CCCEEEEEec
Confidence 5 56779999999999 9999998554
No 201
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.34 E-value=1.4e-06 Score=74.28 Aligned_cols=121 Identities=14% Similarity=0.175 Sum_probs=77.4
Q ss_pred HHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhccCC
Q 037961 26 LIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQNVAT 96 (262)
Q Consensus 26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~ 96 (262)
++..+ ..+.+|||+-|=||.++...+..|+ +|+.||.|..+++.++++ ..++++..|.+.. ...+. .
T Consensus 117 ~v~~~-~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~--l~~~~-~ 192 (286)
T PF10672_consen 117 WVRKY-AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF--LKRLK-K 192 (286)
T ss_dssp HHHHH-CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH--HHHHH-H
T ss_pred HHHHH-cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH--HHHHh-c
Confidence 34443 4578999999999999999888886 799999999999999863 4677887772211 11111 2
Q ss_pred CCceeeEEEccccc------cC-ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhc
Q 037961 97 QSSVDLVTIASALH------WF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFK 151 (262)
Q Consensus 97 ~~~~D~V~~~~~~~------~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~ 151 (262)
.++||+|++...-. -. |..+++..+.++|+ |||.|++++++...-.+.+.+...
T Consensus 193 ~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~-~gG~l~~~scs~~i~~~~l~~~~~ 253 (286)
T PF10672_consen 193 GGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLK-PGGLLLTCSCSHHISPDFLLEAVA 253 (286)
T ss_dssp TT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEE-EEEEEEEEE--TTS-HHHHHHHHH
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcC-CCCEEEEEcCCcccCHHHHHHHHH
Confidence 46899999843321 11 44557889999999 999998866654332233444433
No 202
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.30 E-value=6.5e-06 Score=65.41 Aligned_cols=114 Identities=19% Similarity=0.154 Sum_probs=81.1
Q ss_pred hCCCC---hHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCC
Q 037961 15 ARPNY---PKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTP 83 (262)
Q Consensus 15 ~rp~y---p~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~ 83 (262)
.||+- -+.++++|.+..-.+.++||+-+|+|.++...+++|+ +++.||.+...+...+++ .+..+...|
T Consensus 22 ~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~d 101 (187)
T COG0742 22 TRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRND 101 (187)
T ss_pred cCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeec
Confidence 56654 3566777766323567889999999999999999875 799999999999988763 445555554
Q ss_pred CCchhhhhhccC--CCCceeeEEEccccccC--ChhHHHHH--HHHhhcCCCeEEEE
Q 037961 84 TMSITELEQNVA--TQSSVDLVTIASALHWF--DLPQFYKQ--VKWVLKKPSGVIAA 134 (262)
Q Consensus 84 ~~~~~~~~~~~~--~~~~~D~V~~~~~~~~~--d~~~~l~~--~~r~Lk~pgG~l~i 134 (262)
. ...+.- ..++||+|+....+++- +....+.. -..+|+ |+|.+++
T Consensus 102 a-----~~~L~~~~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~-~~~~iv~ 152 (187)
T COG0742 102 A-----LRALKQLGTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLK-PGALIVV 152 (187)
T ss_pred H-----HHHHHhcCCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcC-CCcEEEE
Confidence 1 111111 22359999999999854 43444444 457799 9999998
No 203
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.29 E-value=4.6e-06 Score=66.66 Aligned_cols=102 Identities=21% Similarity=0.194 Sum_probs=68.5
Q ss_pred hHHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCC--e---------EEEEcCCHHHHHHHhcC-------CCceE
Q 037961 20 PKELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQ--H---------VIATDTSPKQLKFAIKL-------PNIRY 79 (262)
Q Consensus 20 p~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~--~---------v~~vD~s~~~~~~a~~~-------~~~~~ 79 (262)
.+.+...|+... .++..+||--||+|.+....+..+. . ++|+|+++.+++.++++ ..+.+
T Consensus 13 ~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~ 92 (179)
T PF01170_consen 13 RPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDF 92 (179)
T ss_dssp -HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEE
T ss_pred CHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEE
Confidence 345555555544 4678999999999999987765422 2 78999999999998863 23445
Q ss_pred EeCCCCchhhhhhccCCCCceeeEEEccccccC-Ch--------hHHHHHHHHhhcCC
Q 037961 80 QLTPTMSITELEQNVATQSSVDLVTIASALHWF-DL--------PQFYKQVKWVLKKP 128 (262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d~--------~~~l~~~~r~Lk~p 128 (262)
.+ .|+..+++.++++|.|+++..+--- .. ..+++++.++|+ +
T Consensus 93 ~~------~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~-~ 143 (179)
T PF01170_consen 93 IQ------WDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLK-P 143 (179)
T ss_dssp EE--------GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHST-T
T ss_pred Ee------cchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCC-C
Confidence 54 3577777778899999999877643 21 226788889998 7
No 204
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.28 E-value=5.8e-06 Score=74.68 Aligned_cols=121 Identities=15% Similarity=0.160 Sum_probs=79.4
Q ss_pred HHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhh
Q 037961 21 KELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQ 92 (262)
Q Consensus 21 ~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~ 92 (262)
+.+++...+... +..++||+=||.|.+++.|+++..+|+|+|+++++++.|+++ .|+.+..++ ++.
T Consensus 279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~------ae~ 352 (432)
T COG2265 279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGD------AEE 352 (432)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCC------HHH
Confidence 455666666654 567899999999999999999999999999999999999863 567888776 222
Q ss_pred cc---CCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhc
Q 037961 93 NV---ATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFK 151 (262)
Q Consensus 93 ~~---~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~ 151 (262)
.. .....+|.|+....=--+| +.+++.+.+. + |-.++++ +++..++.+.+..+..
T Consensus 353 ~~~~~~~~~~~d~VvvDPPR~G~~-~~~lk~l~~~-~-p~~IvYV-SCNP~TlaRDl~~L~~ 410 (432)
T COG2265 353 FTPAWWEGYKPDVVVVDPPRAGAD-REVLKQLAKL-K-PKRIVYV-SCNPATLARDLAILAS 410 (432)
T ss_pred HhhhccccCCCCEEEECCCCCCCC-HHHHHHHHhc-C-CCcEEEE-eCCHHHHHHHHHHHHh
Confidence 22 1345789999532211111 1244444443 4 6666766 4444444444544443
No 205
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.27 E-value=2.1e-05 Score=68.29 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=71.7
Q ss_pred HHHhhCCCCCeEEEEcCcccHhHHHHHhh------CCeEEEEcCCHHHHHHHhc------CCCceE--EeCCCCchhhhh
Q 037961 26 LIASKTPKRNLAWDVGTRSGQAAASLAQI------YQHVIATDTSPKQLKFAIK------LPNIRY--QLTPTMSITELE 91 (262)
Q Consensus 26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a~~------~~~~~~--~~~~~~~~~~~~ 91 (262)
.|...++++..++|+|||+|.=+..|.+. ...++++|+|.++++.+.+ .+.+.+ +.++ ..+..
T Consensus 69 ~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gd---y~~~l 145 (319)
T TIGR03439 69 DIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGT---YDDGL 145 (319)
T ss_pred HHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEec---HHHHH
Confidence 45556677888999999999988776652 3579999999999998764 244554 4444 11111
Q ss_pred h-ccC--CCCceeeEE-EccccccCChhH---HHHHHHH-hhcCCCeEEEE
Q 037961 92 Q-NVA--TQSSVDLVT-IASALHWFDLPQ---FYKQVKW-VLKKPSGVIAA 134 (262)
Q Consensus 92 ~-~~~--~~~~~D~V~-~~~~~~~~d~~~---~l~~~~r-~Lk~pgG~l~i 134 (262)
. ++- ......+|+ ...++..++++. +++++.+ .|+ |||.|++
T Consensus 146 ~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~-~~d~lLi 195 (319)
T TIGR03439 146 AWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALS-PSDSFLI 195 (319)
T ss_pred hhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCC-CCCEEEE
Confidence 1 211 123356665 456888886555 7889999 999 9999988
No 206
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.26 E-value=4.8e-06 Score=71.41 Aligned_cols=90 Identities=16% Similarity=0.159 Sum_probs=65.5
Q ss_pred hCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcC----CCceEEeCCCCch
Q 037961 15 ARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKL----PNIRYQLTPTMSI 87 (262)
Q Consensus 15 ~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~ 87 (262)
|.|...+++++.+.. .++..++|++||.|..|..+++.. .+|+|+|.++.|++.+++. .++.++.++ +
T Consensus 3 H~pVll~Evl~~L~~--~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~---f 77 (296)
T PRK00050 3 HIPVLLDEVVDALAI--KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGN---F 77 (296)
T ss_pred CccccHHHHHHhhCC--CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCC---H
Confidence 567777777777642 466799999999999999999874 6899999999999999863 367787776 1
Q ss_pred hhhhhccCC-CCceeeEEEcccc
Q 037961 88 TELEQNVAT-QSSVDLVTIASAL 109 (262)
Q Consensus 88 ~~~~~~~~~-~~~~D~V~~~~~~ 109 (262)
.++...... -.++|.|++...+
T Consensus 78 ~~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 78 SNLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHHHHHHHcCCCccCEEEECCCc
Confidence 122221111 1279999986655
No 207
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.26 E-value=2.7e-06 Score=75.26 Aligned_cols=123 Identities=15% Similarity=0.146 Sum_probs=70.8
Q ss_pred HHHHHHHHhhCC-CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCC--Cch--h-
Q 037961 21 KELFKLIASKTP-KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPT--MSI--T- 88 (262)
Q Consensus 21 ~~~~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~--~~~--~- 88 (262)
+.+++.+.+.++ ....+||+-||.|.++..|++.+.+|+|+|.++.+++.|+++ .++++..++. +.. .
T Consensus 183 ~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~ 262 (352)
T PF05958_consen 183 EKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAK 262 (352)
T ss_dssp HHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCC
T ss_pred HHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHh
Confidence 566777777664 234799999999999999999999999999999999999852 6788887651 100 0
Q ss_pred --h---hhhccCCCCceeeEEEccccccCChhH--HHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhc
Q 037961 89 --E---LEQNVATQSSVDLVTIASALHWFDLPQ--FYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFK 151 (262)
Q Consensus 89 --~---~~~~~~~~~~~D~V~~~~~~~~~d~~~--~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~ 151 (262)
+ .....+....+|+|+. ||+. +-.++.+.++++. .++-.++++.++.+.+..+.+
T Consensus 263 ~r~~~~~~~~~~~~~~~d~vil-------DPPR~G~~~~~~~~~~~~~-~ivYvSCnP~tlaRDl~~L~~ 324 (352)
T PF05958_consen 263 AREFNRLKGIDLKSFKFDAVIL-------DPPRAGLDEKVIELIKKLK-RIVYVSCNPATLARDLKILKE 324 (352)
T ss_dssp S-GGTTGGGS-GGCTTESEEEE----------TT-SCHHHHHHHHHSS-EEEEEES-HHHHHHHHHHHHC
T ss_pred hHHHHhhhhhhhhhcCCCEEEE-------cCCCCCchHHHHHHHhcCC-eEEEEECCHHHHHHHHHHHhh
Confidence 0 0111122346899884 5444 2222222332153 444445555555555555543
No 208
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.26 E-value=1.5e-05 Score=67.98 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=68.7
Q ss_pred HHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcCC-CceEEeCCCCchhhhhhccC
Q 037961 22 ELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKLP-NIRYQLTPTMSITELEQNVA 95 (262)
Q Consensus 22 ~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~ 95 (262)
.+++.|....+ ...+|||+|||+|..+..+.+. ..+++++|.|+.|++.++... .........+. ........
T Consensus 20 ~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~ 98 (274)
T PF09243_consen 20 RVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWR-RVLYRDFL 98 (274)
T ss_pred HHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhh-hhhhcccc
Confidence 44555555544 4578999999999877666553 458999999999999887531 11100000000 00110001
Q ss_pred CCCceeeEEEccccccCChhH---HHHHHHHhhcCCCeEEEEEecCCCc
Q 037961 96 TQSSVDLVTIASALHWFDLPQ---FYKQVKWVLKKPSGVIAAWTYTMPE 141 (262)
Q Consensus 96 ~~~~~D~V~~~~~~~~~d~~~---~l~~~~r~Lk~pgG~l~i~~~~~~~ 141 (262)
+-.+.|+|+++++|.-+.... +++.+.+.+. + .|++...+.+.
T Consensus 99 ~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~-~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 99 PFPPDDLVIASYVLNELPSAARAELVRSLWNKTA-P--VLVLVEPGTPA 144 (274)
T ss_pred cCCCCcEEEEehhhhcCCchHHHHHHHHHHHhcc-C--cEEEEcCCChH
Confidence 222349999999998883332 5555555555 3 77776666543
No 209
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.25 E-value=6.3e-06 Score=71.32 Aligned_cols=96 Identities=13% Similarity=0.022 Sum_probs=73.4
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW 111 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~ 111 (262)
.++.++||+||++|.+|..++++|.+|++||.+ .|-......+++.....+. +...| +.+.+|+|+|..+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g-~l~~~L~~~~~V~h~~~d~-----fr~~p-~~~~vDwvVcDmv--- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNG-PMAQSLMDTGQVEHLRADG-----FKFRP-PRKNVDWLVCDMV--- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEech-hcCHhhhCCCCEEEEeccC-----cccCC-CCCCCCEEEEecc---
Confidence 578899999999999999999999999999966 4555666778899988762 22222 2678999999766
Q ss_pred CChhHHHHHHHHhhcCCCe-EEEEEecC
Q 037961 112 FDLPQFYKQVKWVLKKPSG-VIAAWTYT 138 (262)
Q Consensus 112 ~d~~~~l~~~~r~Lk~pgG-~l~i~~~~ 138 (262)
..|..+.+-+.+.|. .|- .-+|++.-
T Consensus 280 e~P~rva~lm~~Wl~-~g~cr~aIfnLK 306 (357)
T PRK11760 280 EKPARVAELMAQWLV-NGWCREAIFNLK 306 (357)
T ss_pred cCHHHHHHHHHHHHh-cCcccEEEEEEE
Confidence 367788899999998 552 24455544
No 210
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.25 E-value=2e-06 Score=64.84 Aligned_cols=90 Identities=14% Similarity=0.158 Sum_probs=64.2
Q ss_pred CCCChHHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCch
Q 037961 16 RPNYPKELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSI 87 (262)
Q Consensus 16 rp~yp~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~ 87 (262)
||.....++..|.+..+ .+..++|+|||.|-++...+-.+ ..|+|+|++|+.++.++++ -++.+++.+
T Consensus 29 ~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcd---- 104 (185)
T KOG3420|consen 29 RPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCD---- 104 (185)
T ss_pred cHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeee----
Confidence 44444455555555444 67889999999999997766654 4689999999999999875 245555544
Q ss_pred hhhhhccCCCCceeeEEEcccccc
Q 037961 88 TELEQNVATQSSVDLVTIASALHW 111 (262)
Q Consensus 88 ~~~~~~~~~~~~~D~V~~~~~~~~ 111 (262)
+.++-+..+.||.++.+..+.-
T Consensus 105 --ildle~~~g~fDtaviNppFGT 126 (185)
T KOG3420|consen 105 --ILDLELKGGIFDTAVINPPFGT 126 (185)
T ss_pred --ccchhccCCeEeeEEecCCCCc
Confidence 3334345688999999988753
No 211
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=1.2e-05 Score=62.96 Aligned_cols=99 Identities=24% Similarity=0.338 Sum_probs=69.8
Q ss_pred CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhc-----CCCceEEeCCCCchhhhhhccCCCCceeeEE
Q 037961 33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIK-----LPNIRYQLTPTMSITELEQNVATQSSVDLVT 104 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~ 104 (262)
....++|+|||+|..+..|++. +..+.++|++|..++...+ .-++..+..| +.. .+.++++|+++
T Consensus 43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~td------l~~-~l~~~~VDvLv 115 (209)
T KOG3191|consen 43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTD------LLS-GLRNESVDVLV 115 (209)
T ss_pred CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehh------HHh-hhccCCccEEE
Confidence 3677899999999999999885 4568899999999987543 2345566554 111 13458999998
Q ss_pred Eccccc---------------cC---C----hhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961 105 IASALH---------------WF---D----LPQFYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 105 ~~~~~~---------------~~---d----~~~~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
.+...- |. | .++++..+-.+|. |.|.+++.....
T Consensus 116 fNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLS-p~Gv~Ylv~~~~ 171 (209)
T KOG3191|consen 116 FNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILS-PRGVFYLVALRA 171 (209)
T ss_pred ECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcC-cCceEEeeehhh
Confidence 864432 33 1 3446667778889 999999866543
No 212
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=2e-05 Score=64.50 Aligned_cols=97 Identities=23% Similarity=0.236 Sum_probs=72.5
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHH-HHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLK-FAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL 109 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~ 109 (262)
.++.++||+|+.||.+|..+.++|+ +|+|+|.+-.++. ..|+.+++...+..+...-+-++ +. +..|++++.-+|
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~--~~-~~~d~~v~DvSF 154 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPED--FT-EKPDLIVIDVSF 154 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHH--cc-cCCCeEEEEeeh
Confidence 5889999999999999999999975 7999999998887 45666666666544111101111 12 267999987764
Q ss_pred ccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 110 HWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 110 ~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+....++..+..+++ |+|.++.
T Consensus 155 --ISL~~iLp~l~~l~~-~~~~~v~ 176 (245)
T COG1189 155 --ISLKLILPALLLLLK-DGGDLVL 176 (245)
T ss_pred --hhHHHHHHHHHHhcC-CCceEEE
Confidence 477889999999999 8988775
No 213
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.16 E-value=2.3e-05 Score=62.79 Aligned_cols=90 Identities=23% Similarity=0.316 Sum_probs=70.7
Q ss_pred eEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc------CCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961 36 LAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK------LPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 36 ~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~ 107 (262)
+++|+|+|.|.-+..++=. ..+++.+|.+..-+...+. +.|+++..++ +++ +....+||+|++.-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R------~E~-~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGR------AEE-PEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-------HHH-TTTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEee------ecc-cccCCCccEEEeeh
Confidence 7999999999999988753 5689999999988776653 4788898875 555 44678899999864
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
.. +...+++-+...|+ +||.++++-
T Consensus 124 v~---~l~~l~~~~~~~l~-~~G~~l~~K 148 (184)
T PF02527_consen 124 VA---PLDKLLELARPLLK-PGGRLLAYK 148 (184)
T ss_dssp SS---SHHHHHHHHGGGEE-EEEEEEEEE
T ss_pred hc---CHHHHHHHHHHhcC-CCCEEEEEc
Confidence 42 66789999999999 999998854
No 214
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.12 E-value=9.8e-05 Score=62.37 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=84.0
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh----CCeEEEEcCCHHHHHHHhc------CCCc-eEEeCCCCchhhhhhccCCCCce
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI----YQHVIATDTSPKQLKFAIK------LPNI-RYQLTPTMSITELEQNVATQSSV 100 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~----~~~v~~vD~s~~~~~~a~~------~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 100 (262)
+..-+||||+||.|......... -.+|...|.|+..++..++ +.++ +|.++|.+...+...+ +...
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l---~p~P 210 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAAL---DPAP 210 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhcc---CCCC
Confidence 35678999999999998877654 2479999999999998875 3555 8999885544443333 4457
Q ss_pred eeEEEccccccC-Chh---HHHHHHHHhhcCCCeEEEEEec-CCCcccHHHHHhhccc
Q 037961 101 DLVTIASALHWF-DLP---QFYKQVKWVLKKPSGVIAAWTY-TMPEINESVGAVFKPF 153 (262)
Q Consensus 101 D~V~~~~~~~~~-d~~---~~l~~~~r~Lk~pgG~l~i~~~-~~~~~~~~~~~~~~~~ 153 (262)
++++++..+..| |-+ ..++.+.+++. |||+++..+- .+|.. +.+..++..+
T Consensus 211 ~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~-pgG~lIyTgQPwHPQl-e~IAr~LtsH 266 (311)
T PF12147_consen 211 TLAIVSGLYELFPDNDLVRRSLAGLARALE-PGGYLIYTGQPWHPQL-EMIARVLTSH 266 (311)
T ss_pred CEEEEecchhhCCcHHHHHHHHHHHHHHhC-CCcEEEEcCCCCCcch-HHHHHHHhcc
Confidence 999999998888 533 37889999999 9999987332 23332 3344444443
No 215
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.11 E-value=9.7e-06 Score=70.55 Aligned_cols=104 Identities=14% Similarity=0.165 Sum_probs=82.1
Q ss_pred HHHhhCCCCCeEEEEcCcccHhHHHHHhhCCe-EEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCC
Q 037961 26 LIASKTPKRNLAWDVGTRSGQAAASLAQIYQH-VIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQ 97 (262)
Q Consensus 26 ~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 97 (262)
.++.....+.+|+|.=||.|.++..++..++. |+++|++|..++.++++ ..+..+.+| +.......
T Consensus 181 Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD------~rev~~~~ 254 (341)
T COG2520 181 RVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGD------AREVAPEL 254 (341)
T ss_pred HHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEecc------HHHhhhcc
Confidence 45566678999999999999999999999876 99999999999998863 225556554 44444334
Q ss_pred CceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961 98 SSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 98 ~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
+.+|.|+++..- +..+++..+.+.++ +||++-.+...+
T Consensus 255 ~~aDrIim~~p~---~a~~fl~~A~~~~k-~~g~iHyy~~~~ 292 (341)
T COG2520 255 GVADRIIMGLPK---SAHEFLPLALELLK-DGGIIHYYEFVP 292 (341)
T ss_pred ccCCEEEeCCCC---cchhhHHHHHHHhh-cCcEEEEEeccc
Confidence 789999987542 55678999999999 899998876653
No 216
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.06 E-value=2.1e-05 Score=66.83 Aligned_cols=98 Identities=13% Similarity=0.094 Sum_probs=70.0
Q ss_pred HHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc----CCCceEEeCCCCchhhhhhcc
Q 037961 21 KELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK----LPNIRYQLTPTMSITELEQNV 94 (262)
Q Consensus 21 ~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~ 94 (262)
+.+.+.|.+.+. ++..|||+|+|+|.+|..|++.+.+++++|+++.+++..++ .++++++.+| +..+.
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D------~l~~~ 89 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGD------FLKWD 89 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-------TTTSC
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecc------hhccc
Confidence 455666666553 68899999999999999999999999999999999998886 3788999887 22222
Q ss_pred CC---CCceeeEEEccccccCChhHHHHHHHHhhc
Q 037961 95 AT---QSSVDLVTIASALHWFDLPQFYKQVKWVLK 126 (262)
Q Consensus 95 ~~---~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk 126 (262)
.. ......|+++... --....+.++...-+
T Consensus 90 ~~~~~~~~~~~vv~NlPy--~is~~il~~ll~~~~ 122 (262)
T PF00398_consen 90 LYDLLKNQPLLVVGNLPY--NISSPILRKLLELYR 122 (262)
T ss_dssp GGGHCSSSEEEEEEEETG--TGHHHHHHHHHHHGG
T ss_pred cHHhhcCCceEEEEEecc--cchHHHHHHHhhccc
Confidence 22 2456677777554 222346666665434
No 217
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.06 E-value=7.8e-06 Score=63.86 Aligned_cols=72 Identities=21% Similarity=0.263 Sum_probs=47.3
Q ss_pred CeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961 35 NLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~ 107 (262)
.+|+|+.||.|..+.++|+.+.+|+++|+++..++.|+.+ .++.++.+|-+. -...+... ..+|+|+++.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~--~~~~~~~~-~~~D~vFlSP 77 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFE--LLKRLKSN-KIFDVVFLSP 77 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHH--HGGGB-------SEEEE--
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHH--HHhhcccc-ccccEEEECC
Confidence 3689999999999999999999999999999999999863 578999887111 11112111 1189999865
Q ss_pred cc
Q 037961 108 AL 109 (262)
Q Consensus 108 ~~ 109 (262)
.+
T Consensus 78 PW 79 (163)
T PF09445_consen 78 PW 79 (163)
T ss_dssp -B
T ss_pred CC
Confidence 54
No 218
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.02 E-value=6.2e-05 Score=61.34 Aligned_cols=97 Identities=18% Similarity=0.301 Sum_probs=71.2
Q ss_pred CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhc-------CCCceEEeCC-CCchhhhhhccCCCCcee
Q 037961 33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIK-------LPNIRYQLTP-TMSITELEQNVATQSSVD 101 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~-------~~~~~~~~~~-~~~~~~~~~~~~~~~~~D 101 (262)
...++||||.=||..+..+|.. +.+|+++|+++...+.+.+ ...+++++++ .-++....+- .+.++||
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~-~~~~tfD 151 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLAD-GESGTFD 151 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhc-CCCCcee
Confidence 4567799999999998888764 7799999999998887754 2678888887 2111111111 2578999
Q ss_pred eEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961 102 LVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 102 ~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+++.. ||- .-...+.++.+++| +||+|++
T Consensus 152 faFvD---adK~nY~~y~e~~l~Llr-~GGvi~~ 181 (237)
T KOG1663|consen 152 FAFVD---ADKDNYSNYYERLLRLLR-VGGVIVV 181 (237)
T ss_pred EEEEc---cchHHHHHHHHHHHhhcc-cccEEEE
Confidence 99853 232 23347899999999 9999998
No 219
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.02 E-value=1.7e-05 Score=68.92 Aligned_cols=112 Identities=19% Similarity=0.241 Sum_probs=71.8
Q ss_pred hHHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHh---------hCCeEEEEcCCHHHHHHHhcC--------CCceEE
Q 037961 20 PKELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQ---------IYQHVIATDTSPKQLKFAIKL--------PNIRYQ 80 (262)
Q Consensus 20 p~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~---------~~~~v~~vD~s~~~~~~a~~~--------~~~~~~ 80 (262)
|..+.+.+...+. ++.+|+|-+||+|.+...+.. ...+++|+|+++.++..++-. .+....
T Consensus 31 P~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~ 110 (311)
T PF02384_consen 31 PREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINII 110 (311)
T ss_dssp -HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEE
T ss_pred HHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccc
Confidence 7788887777653 456799999999999888766 246899999999999877631 223355
Q ss_pred eCCCCchhhhhhccC-CCCceeeEEEccccc---cCCh-------------------hHHHHHHHHhhcCCCeEEEEEec
Q 037961 81 LTPTMSITELEQNVA-TQSSVDLVTIASALH---WFDL-------------------PQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~D~V~~~~~~~---~~d~-------------------~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.++.+ ..... ....||+|+++..+- |.+. -.++..+.+.|+ +||++++...
T Consensus 111 ~~d~l-----~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk-~~G~~~~Ilp 184 (311)
T PF02384_consen 111 QGDSL-----ENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLK-PGGRAAIILP 184 (311)
T ss_dssp ES-TT-----TSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEE-EEEEEEEEEE
T ss_pred ccccc-----cccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcc-cccceeEEec
Confidence 55421 11111 257899999986663 2110 137899999999 9999887443
No 220
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.02 E-value=7.5e-05 Score=68.27 Aligned_cols=100 Identities=16% Similarity=0.215 Sum_probs=70.3
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhcc-CCCCcee
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNV-ATQSSVD 101 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~~D 101 (262)
.++.+|||++||+|.=|.+++... ..|++.|+++.-++.++++ .++.+...| ...+. ...+.||
T Consensus 112 ~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D------~~~~~~~~~~~fD 185 (470)
T PRK11933 112 NAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFD------GRVFGAALPETFD 185 (470)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCc------hhhhhhhchhhcC
Confidence 577899999999999999998852 4799999999999877642 455555544 22221 1245799
Q ss_pred eEEEcccc--------------ccC--C-------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 102 LVTIASAL--------------HWF--D-------LPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 102 ~V~~~~~~--------------~~~--d-------~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
.|+..-.+ .|- + ..+++..+.++|| |||+|+-.+++
T Consensus 186 ~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lk-pGG~LVYSTCT 244 (470)
T PRK11933 186 AILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALK-PGGTLVYSTCT 244 (470)
T ss_pred eEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcC-CCcEEEEECCC
Confidence 99953222 122 1 1347889999999 99999765555
No 221
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=97.94 E-value=9.3e-05 Score=59.64 Aligned_cols=108 Identities=19% Similarity=0.181 Sum_probs=80.3
Q ss_pred HHHHHhhC-CCCCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhc-----CCCceEEeCC-CCchhhhhhccC
Q 037961 24 FKLIASKT-PKRNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIK-----LPNIRYQLTP-TMSITELEQNVA 95 (262)
Q Consensus 24 ~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~-----~~~~~~~~~~-~~~~~~~~~~~~ 95 (262)
+..+++.+ .++.+||.||-|-|.....+.++ -.+-+-++..|+.++..+. ..++..+.+. + ..+.. +
T Consensus 91 Mha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~We---Dvl~~--L 165 (271)
T KOG1709|consen 91 MHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWE---DVLNT--L 165 (271)
T ss_pred HHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchH---hhhcc--c
Confidence 33444333 47899999999999999998876 4466789999999999885 3567666665 2 11222 4
Q ss_pred CCCceeeEEEccc-cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 96 TQSSVDLVTIASA-LHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 96 ~~~~~D~V~~~~~-~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
+++.||-|+-..- -++-|...+.+.+.|+|| |+|++..++-
T Consensus 166 ~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLk-P~gv~SyfNg 207 (271)
T KOG1709|consen 166 PDKHFDGIYYDTYSELYEDLRHFHQHVVRLLK-PEGVFSYFNG 207 (271)
T ss_pred cccCcceeEeechhhHHHHHHHHHHHHhhhcC-CCceEEEecC
Confidence 7888999986544 444488889999999999 9999987553
No 222
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.91 E-value=3.7e-05 Score=62.61 Aligned_cols=107 Identities=15% Similarity=0.184 Sum_probs=58.9
Q ss_pred HHHHHhhC--CCCCeEEEEcCcccHhHHHHHh-hC-CeEEEEcCCHHHHHHHhc---------------CCCceEEeCCC
Q 037961 24 FKLIASKT--PKRNLAWDVGTRSGQAAASLAQ-IY-QHVIATDTSPKQLKFAIK---------------LPNIRYQLTPT 84 (262)
Q Consensus 24 ~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~-~~-~~v~~vD~s~~~~~~a~~---------------~~~~~~~~~~~ 84 (262)
+..+.... .+..+.+|+|||.|....+.+- .+ .+.+|||+.+...+.|.. ...+.+..+|-
T Consensus 31 ~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 31 VSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 33344443 4788999999999999887764 34 459999999998877653 13445555541
Q ss_pred CchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 85 MSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 85 ~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+. .+.....+ ...|+|++++.+---+....+.+...-|| +|-+++.
T Consensus 111 l~-~~~~~~~~--s~AdvVf~Nn~~F~~~l~~~L~~~~~~lk-~G~~IIs 156 (205)
T PF08123_consen 111 LD-PDFVKDIW--SDADVVFVNNTCFDPDLNLALAELLLELK-PGARIIS 156 (205)
T ss_dssp TT-HHHHHHHG--HC-SEEEE--TTT-HHHHHHHHHHHTTS--TT-EEEE
T ss_pred cc-cHhHhhhh--cCCCEEEEeccccCHHHHHHHHHHHhcCC-CCCEEEE
Confidence 11 11111111 24699999876532244446677777888 7776654
No 223
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.87 E-value=0.0001 Score=62.24 Aligned_cols=112 Identities=16% Similarity=0.163 Sum_probs=75.5
Q ss_pred HHHHHHHHhhCC------CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc-------C-------------
Q 037961 21 KELFKLIASKTP------KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK-------L------------- 74 (262)
Q Consensus 21 ~~~~~~l~~~~~------~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-------~------------- 74 (262)
+-+++.|....+ ...+||--|||.|.++-.++..|..+.|.|.|--|+-..+- .
T Consensus 38 ~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~s 117 (270)
T PF07942_consen 38 SPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFS 117 (270)
T ss_pred HHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceeccc
Confidence 344555555544 34789999999999999999999999999999999754321 0
Q ss_pred ---------CCceEE-----e----CC--CCchhhhhhccCCC---CceeeEEEccccccC-ChhHHHHHHHHhhcCCCe
Q 037961 75 ---------PNIRYQ-----L----TP--TMSITELEQNVATQ---SSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSG 130 (262)
Q Consensus 75 ---------~~~~~~-----~----~~--~~~~~~~~~~~~~~---~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG 130 (262)
..+.+- . .. ....+|+.+.-.++ ++||.|+..+-+--. +.-..++.+.++|| |||
T Consensus 118 n~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLk-pgG 196 (270)
T PF07942_consen 118 NQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLK-PGG 196 (270)
T ss_pred CCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhc-cCC
Confidence 001111 0 00 12234555543334 799999988555544 55668999999999 999
Q ss_pred EEE
Q 037961 131 VIA 133 (262)
Q Consensus 131 ~l~ 133 (262)
..+
T Consensus 197 ~WI 199 (270)
T PF07942_consen 197 YWI 199 (270)
T ss_pred EEE
Confidence 443
No 224
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.86 E-value=8.2e-05 Score=69.41 Aligned_cols=90 Identities=19% Similarity=0.143 Sum_probs=56.6
Q ss_pred hHHHHHHHHhhC----C-----CCCeEEEEcCcccHhHHHHHhhC----------CeEEEEcCCHHHHHHHhcC----C-
Q 037961 20 PKELFKLIASKT----P-----KRNLAWDVGTRSGQAAASLAQIY----------QHVIATDTSPKQLKFAIKL----P- 75 (262)
Q Consensus 20 p~~~~~~l~~~~----~-----~~~~vlDvGcG~G~~~~~l~~~~----------~~v~~vD~s~~~~~~a~~~----~- 75 (262)
|..+.+.|.... + ...+|||.|||+|.+...++.+. .+++|+|+++..+..++.+ .
T Consensus 9 P~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~ 88 (524)
T TIGR02987 9 PPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL 88 (524)
T ss_pred cHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC
Confidence 566666665543 1 23589999999999998887532 4689999999999988753 2
Q ss_pred -CceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961 76 -NIRYQLTPTMSITELEQNVATQSSVDLVTIASALH 110 (262)
Q Consensus 76 -~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~ 110 (262)
.+.....+.+. .......-..+.||+|+++..+-
T Consensus 89 ~~~~i~~~d~l~-~~~~~~~~~~~~fD~IIgNPPy~ 123 (524)
T TIGR02987 89 LEINVINFNSLS-YVLLNIESYLDLFDIVITNPPYG 123 (524)
T ss_pred CCceeeeccccc-ccccccccccCcccEEEeCCCcc
Confidence 23334333110 00000011135799999987664
No 225
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.86 E-value=0.0002 Score=64.49 Aligned_cols=110 Identities=18% Similarity=0.183 Sum_probs=84.2
Q ss_pred HHHHHHHHhhCCCCC-eEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhc-----CCCceEEeCCCCchhhhhhc
Q 037961 21 KELFKLIASKTPKRN-LAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIK-----LPNIRYQLTPTMSITELEQN 93 (262)
Q Consensus 21 ~~~~~~l~~~~~~~~-~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~-----~~~~~~~~~~~~~~~~~~~~ 93 (262)
-.+...|..+..+.. ++|-+|||.-.++..+-..| ..|+.+|.|+..++.... .+...+... +...+
T Consensus 35 l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~------d~~~l 108 (482)
T KOG2352|consen 35 LSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKERPEMQMVEM------DMDQL 108 (482)
T ss_pred HHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCCcceEEEEe------cchhc
Confidence 344555666666666 89999999999999988875 579999999999887653 245555554 46677
Q ss_pred cCCCCceeeEEEccccccC--Chh---------HHHHHHHHhhcCCCeEEEEEec
Q 037961 94 VATQSSVDLVTIASALHWF--DLP---------QFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 94 ~~~~~~~D~V~~~~~~~~~--d~~---------~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.+++++||+|+--..++.+ |-. ..+.++.|+|+ |||++....+
T Consensus 109 ~fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~-~~gk~~svtl 162 (482)
T KOG2352|consen 109 VFEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLA-PGGKYISVTL 162 (482)
T ss_pred cCCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhc-cCCEEEEEEe
Confidence 8899999999998888866 322 24679999999 9999886555
No 226
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.85 E-value=3.2e-05 Score=64.91 Aligned_cols=98 Identities=18% Similarity=0.187 Sum_probs=63.6
Q ss_pred CCCeEEEEcCcccHhHHHHH-hhCCeEEEEcCCHHHHHHHhcC-------------------C---------------Cc
Q 037961 33 KRNLAWDVGTRSGQAAASLA-QIYQHVIATDTSPKQLKFAIKL-------------------P---------------NI 77 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~-------------------~---------------~~ 77 (262)
++.++||||||+-..-...+ +.+.+|+..|.++..++..++- . .|
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 55789999999965543333 4577899999999998866530 0 01
Q ss_pred e-EEeCCCCchhhhhh-ccCCC-----CceeeEEEccccccC--ChhH---HHHHHHHhhcCCCeEEEEEec
Q 037961 78 R-YQLTPTMSITELEQ-NVATQ-----SSVDLVTIASALHWF--DLPQ---FYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 78 ~-~~~~~~~~~~~~~~-~~~~~-----~~~D~V~~~~~~~~~--d~~~---~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
. ++..| ... -|+.. .+||+|++.+++.-. |.+. +++++.++|| |||.|++...
T Consensus 136 k~Vv~cD------V~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLk-pGG~Lil~~~ 200 (256)
T PF01234_consen 136 KQVVPCD------VTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLK-PGGHLILAGV 200 (256)
T ss_dssp EEEEE--------TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEE-EEEEEEEEEE
T ss_pred ceEEEee------ccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcC-CCcEEEEEEE
Confidence 1 12222 111 11222 359999999999877 5554 8999999999 9999998443
No 227
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=97.79 E-value=0.00014 Score=58.96 Aligned_cols=118 Identities=17% Similarity=0.238 Sum_probs=78.1
Q ss_pred HHHHHHHHhhCC------CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhcc
Q 037961 21 KELFKLIASKTP------KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNV 94 (262)
Q Consensus 21 ~~~~~~l~~~~~------~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 94 (262)
..++++|..... ..-++|||||=+......-.. ..+|+.||+++. .+.|.- .|+...|
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~~-~fdvt~IDLns~-------~~~I~q--------qDFm~rp 96 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTSG-WFDVTRIDLNSQ-------HPGILQ--------QDFMERP 96 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCcccccC-ceeeEEeecCCC-------CCCcee--------eccccCC
Confidence 566888876652 235889999976543322222 345999999862 233222 2344444
Q ss_pred C---CCCceeeEEEccccccC-ChhH---HHHHHHHhhcCCCeE-----EEEEecCCC----c-c-cHHHHHhhccccc
Q 037961 95 A---TQSSVDLVTIASALHWF-DLPQ---FYKQVKWVLKKPSGV-----IAAWTYTMP----E-I-NESVGAVFKPFDT 155 (262)
Q Consensus 95 ~---~~~~~D~V~~~~~~~~~-d~~~---~l~~~~r~Lk~pgG~-----l~i~~~~~~----~-~-~~~~~~~~~~~~~ 155 (262)
+ ++++||+|.++..+.++ ++.. .++.+.+.|+ |+|. |.+...... . + .+.+..++..+..
T Consensus 97 lp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~-~~g~~~~~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LGf 174 (219)
T PF11968_consen 97 LPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLK-PPGLSLFPSLFLVLPLPCVTNSRYMTEERLREIMESLGF 174 (219)
T ss_pred CCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhC-CCCccCcceEEEEeCchHhhcccccCHHHHHHHHHhCCc
Confidence 4 47789999999999999 6666 8999999999 8998 776443321 1 1 3566777766544
No 228
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.79 E-value=0.00012 Score=61.60 Aligned_cols=135 Identities=18% Similarity=0.160 Sum_probs=69.8
Q ss_pred CeEEEEcCccc--HhHHHHHhh---CCeEEEEcCCHHHHHHHhc----CCC--ceEEeCCCCchhhhhhcc-----CCCC
Q 037961 35 NLAWDVGTRSG--QAAASLAQI---YQHVIATDTSPKQLKFAIK----LPN--IRYQLTPTMSITELEQNV-----ATQS 98 (262)
Q Consensus 35 ~~vlDvGcG~G--~~~~~l~~~---~~~v~~vD~s~~~~~~a~~----~~~--~~~~~~~~~~~~~~~~~~-----~~~~ 98 (262)
...||+|||-- ..+-.+++. .++|+.+|.+|-.+..++. .++ ..++.+|.-.-+.+-.-+ +.-.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~ 149 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFD 149 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TT
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCC
Confidence 56799999942 234445443 6899999999999998875 255 778888811111111100 1112
Q ss_pred ceeeEEEccccccC-C---hhHHHHHHHHhhcCCCeEEEEEecCCCcc---cHHHHHhhcccccCCCCCCccccchhHHh
Q 037961 99 SVDLVTIASALHWF-D---LPQFYKQVKWVLKKPSGVIAAWTYTMPEI---NESVGAVFKPFDTIDCNPFWAPQRKLVDK 171 (262)
Q Consensus 99 ~~D~V~~~~~~~~~-d---~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (262)
.-=.|+....+||+ | +..+++.+...|- ||..|++........ ...+.+++.+ ...+.+...+..+..
T Consensus 150 rPVavll~~vLh~v~D~~dp~~iv~~l~d~la-pGS~L~ish~t~d~~p~~~~~~~~~~~~----~~~~~~~Rs~~ei~~ 224 (267)
T PF04672_consen 150 RPVAVLLVAVLHFVPDDDDPAGIVARLRDALA-PGSYLAISHATDDGAPERAEALEAVYAQ----AGSPGRPRSREEIAA 224 (267)
T ss_dssp S--EEEECT-GGGS-CGCTHHHHHHHHHCCS--TT-EEEEEEEB-TTSHHHHHHHHHHHHH----CCS----B-HHHHHH
T ss_pred CCeeeeeeeeeccCCCccCHHHHHHHHHHhCC-CCceEEEEecCCCCCHHHHHHHHHHHHc----CCCCceecCHHHHHH
Confidence 22356677889999 5 5558999999999 999999966554322 1233344433 333444444444555
Q ss_pred cCC
Q 037961 172 KYM 174 (262)
Q Consensus 172 ~~~ 174 (262)
.+.
T Consensus 225 ~f~ 227 (267)
T PF04672_consen 225 FFD 227 (267)
T ss_dssp CCT
T ss_pred HcC
Confidence 544
No 229
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=0.00035 Score=57.09 Aligned_cols=116 Identities=21% Similarity=0.204 Sum_probs=80.1
Q ss_pred HHHHHHhhCCCChHHHHHH-HHhhC------CC-CCeEEEEcCcccHhHHHHHh--hCCeEEEEcCCHHHHHHHhc----
Q 037961 8 QANLYAVARPNYPKELFKL-IASKT------PK-RNLAWDVGTRSGQAAASLAQ--IYQHVIATDTSPKQLKFAIK---- 73 (262)
Q Consensus 8 ~a~~Y~~~rp~yp~~~~~~-l~~~~------~~-~~~vlDvGcG~G~~~~~l~~--~~~~v~~vD~s~~~~~~a~~---- 73 (262)
-.+.|.-..++-+.++... +.+.+ .. ..+++|||+|.|.-+..++= ...+|+-+|....=+...++
T Consensus 34 wN~~~NLt~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~e 113 (215)
T COG0357 34 WNKAYNLTAIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKE 113 (215)
T ss_pred hhHhcCCCCCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHH
Confidence 3345555666777665333 33322 23 58999999999999999773 34569999999877766653
Q ss_pred --CCCceEEeCCCCchhhhhhccCCCCc-eeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 74 --LPNIRYQLTPTMSITELEQNVATQSS-VDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 74 --~~~~~~~~~~~~~~~~~~~~~~~~~~-~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
++|++++.+. +|+..- ... ||+|+|.-. .+.....+-+..++| +||.++.
T Consensus 114 L~L~nv~i~~~R------aE~~~~-~~~~~D~vtsRAv---a~L~~l~e~~~pllk-~~g~~~~ 166 (215)
T COG0357 114 LGLENVEIVHGR------AEEFGQ-EKKQYDVVTSRAV---ASLNVLLELCLPLLK-VGGGFLA 166 (215)
T ss_pred hCCCCeEEehhh------Hhhccc-ccccCcEEEeehc---cchHHHHHHHHHhcc-cCCcchh
Confidence 4788888765 555431 123 999998543 256778888999999 8888765
No 230
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.74 E-value=0.00028 Score=62.79 Aligned_cols=92 Identities=16% Similarity=0.095 Sum_probs=70.3
Q ss_pred CeEEEEcCcccHhHHHHHhh--C-CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhc-cCCCCceeeEE
Q 037961 35 NLAWDVGTRSGQAAASLAQI--Y-QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQN-VATQSSVDLVT 104 (262)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~--~-~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~~D~V~ 104 (262)
-+|||+.||+|..+...+.. + .+|+++|+++..++.++++ .++.+...| +..+ .-....||+|.
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~D------a~~~l~~~~~~fDvId 119 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNED------AANVLRYRNRKFHVID 119 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchh------HHHHHHHhCCCCCEEE
Confidence 57999999999999999886 3 5899999999999988763 235555554 3322 11235799999
Q ss_pred EccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
... +. .+..++..+.+.++ +||.|.+..
T Consensus 120 lDP-fG--s~~~fld~al~~~~-~~glL~vTa 147 (374)
T TIGR00308 120 IDP-FG--TPAPFVDSAIQASA-ERGLLLVTA 147 (374)
T ss_pred eCC-CC--CcHHHHHHHHHhcc-cCCEEEEEe
Confidence 865 32 45679999999999 999999953
No 231
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.66 E-value=0.00053 Score=55.92 Aligned_cols=109 Identities=24% Similarity=0.205 Sum_probs=73.7
Q ss_pred HHHHHHHHhhC-----CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCH----HHHHHHhcCCCceEEeCC-CCch
Q 037961 21 KELFKLIASKT-----PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSP----KQLKFAIKLPNIRYQLTP-TMSI 87 (262)
Q Consensus 21 ~~~~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~----~~~~~a~~~~~~~~~~~~-~~~~ 87 (262)
.++...|..-+ +++..||-+|+.+|....+++.- ...|.||+.|+ +.+..|++++|+--+..| ..+
T Consensus 56 SKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P- 134 (229)
T PF01269_consen 56 SKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHP- 134 (229)
T ss_dssp -HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSG-
T ss_pred hHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCCh-
Confidence 66666665433 48899999999999999999885 34799999999 556677788898877776 222
Q ss_pred hhhhhccCCCCceeeEEEccccccCCh-hHHHHHHHHhhcCCCeEEEEEe
Q 037961 88 TELEQNVATQSSVDLVTIASALHWFDL-PQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 88 ~~~~~~~~~~~~~D~V~~~~~~~~~d~-~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
+....--+.+|+|++.-+ + -|. +-++.++...|| +||.+++..
T Consensus 135 ---~~Y~~lv~~VDvI~~DVa-Q-p~Qa~I~~~Na~~fLk-~gG~~~i~i 178 (229)
T PF01269_consen 135 ---EKYRMLVEMVDVIFQDVA-Q-PDQARIAALNARHFLK-PGGHLIISI 178 (229)
T ss_dssp ---GGGTTTS--EEEEEEE-S-S-TTHHHHHHHHHHHHEE-EEEEEEEEE
T ss_pred ---HHhhcccccccEEEecCC-C-hHHHHHHHHHHHhhcc-CCcEEEEEE
Confidence 111112348999998755 1 133 337778888999 999999843
No 232
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.64 E-value=0.00011 Score=57.91 Aligned_cols=90 Identities=19% Similarity=0.123 Sum_probs=67.5
Q ss_pred CeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961 35 NLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~ 108 (262)
.++.|+|+|+|.++...+....+|++++.+|.-.+.|.++ .+++++++| +.+..+ ...|+|+|-..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gD------A~~y~f--e~ADvvicEml 105 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGD------ARDYDF--ENADVVICEML 105 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecc------cccccc--cccceeHHHHh
Confidence 6789999999999999988888999999999999999874 467777655 555544 34688887422
Q ss_pred ccc-C--ChhHHHHHHHHhhcCCCeEEE
Q 037961 109 LHW-F--DLPQFYKQVKWVLKKPSGVIA 133 (262)
Q Consensus 109 ~~~-~--d~~~~l~~~~r~Lk~pgG~l~ 133 (262)
=-- + ....++..+...|| -.++++
T Consensus 106 DTaLi~E~qVpV~n~vleFLr-~d~tii 132 (252)
T COG4076 106 DTALIEEKQVPVINAVLEFLR-YDPTII 132 (252)
T ss_pred hHHhhcccccHHHHHHHHHhh-cCCccc
Confidence 111 1 23447888888889 788876
No 233
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00069 Score=60.02 Aligned_cols=103 Identities=21% Similarity=0.273 Sum_probs=69.5
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhC----CeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCcee
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIY----QHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVD 101 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~----~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D 101 (262)
.++.+|||+.+++|.=|.++++.. ..|+++|.++.-++..+.+ .++.....|. ..........++||
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~---~~~~~~~~~~~~fD 231 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDA---RRLAELLPGGEKFD 231 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccc---ccccccccccCcCc
Confidence 477999999999999999998864 4579999999888877642 3444555441 00111112233699
Q ss_pred eEEEcccc------------ccC-C----------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 102 LVTIASAL------------HWF-D----------LPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 102 ~V~~~~~~------------~~~-d----------~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
.|+..-.+ -|- . ..+++..+.++|| |||.|+..+++
T Consensus 232 ~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk-~GG~LVYSTCS 290 (355)
T COG0144 232 RILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLK-PGGVLVYSTCS 290 (355)
T ss_pred EEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEccC
Confidence 99863221 132 2 2237889999999 99999986665
No 234
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=0.00018 Score=65.05 Aligned_cols=63 Identities=24% Similarity=0.296 Sum_probs=52.9
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CCceEEeCC
Q 037961 21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL------PNIRYQLTP 83 (262)
Q Consensus 21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~ 83 (262)
+.++..+.+.. +.+..++|+-||||.++..+++...+|+|++++++.++.|+.+ .|.+|+++.
T Consensus 369 evLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gq 439 (534)
T KOG2187|consen 369 EVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQ 439 (534)
T ss_pred HHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccceeeeecc
Confidence 44555666554 5778999999999999999999999999999999999999864 577888774
No 235
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=97.52 E-value=0.00043 Score=60.11 Aligned_cols=109 Identities=17% Similarity=0.215 Sum_probs=76.2
Q ss_pred ChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhc-------------CCCceEEeCC
Q 037961 19 YPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIK-------------LPNIRYQLTP 83 (262)
Q Consensus 19 yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~-------------~~~~~~~~~~ 83 (262)
|.+.+.---.+..+...+||-+|-|.|-..+.+.+. ..+|+-+|++|.|++.+++ .+++.++..|
T Consensus 275 YhEsLV~pals~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dD 354 (508)
T COG4262 275 YHESLVYPALSSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDD 354 (508)
T ss_pred hhheeeecccccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEecc
Confidence 434433333344456688999999999999999986 5699999999999999883 1667777765
Q ss_pred CCchhhhhhc-cCCCCceeeEEEccc------cccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 84 TMSITELEQN-VATQSSVDLVTIASA------LHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~D~V~~~~~------~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+-+| .-....||.|+.... +.-+=-.++..-+.|.|+ ++|.+++
T Consensus 355 ------Af~wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~-e~Gl~Vv 405 (508)
T COG4262 355 ------AFQWLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLA-ETGLMVV 405 (508)
T ss_pred ------HHHHHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcC-cCceEEE
Confidence 2222 123458999997532 111112346778888999 9999998
No 236
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.51 E-value=0.0012 Score=52.62 Aligned_cols=108 Identities=16% Similarity=0.099 Sum_probs=69.4
Q ss_pred HHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcCC---CceEEeCCCCchhhhhhccCCC
Q 037961 24 FKLIASKTP--KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKLP---NIRYQLTPTMSITELEQNVATQ 97 (262)
Q Consensus 24 ~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~~ 97 (262)
.+++..+.. .+.+|||+|+|+|..+...+..|+ .|++.|+.|...+..+-+. .+.+.... .+-+. .+
T Consensus 68 AR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~------~d~~g-~~ 140 (218)
T COG3897 68 ARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTH------ADLIG-SP 140 (218)
T ss_pred HHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEee------ccccC-CC
Confidence 444444432 678999999999999999998876 7899999977666555432 22222111 11223 67
Q ss_pred CceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE-EecCCC
Q 037961 98 SSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA-WTYTMP 140 (262)
Q Consensus 98 ~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i-~~~~~~ 140 (262)
..||+|+++-.+.-- -..+++. +.+.|+ ..|.-++ .....+
T Consensus 141 ~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~-~~g~~vlvgdp~R~ 183 (218)
T COG3897 141 PAFDLLLAGDLFYNHTEADRLIP-WKDRLA-EAGAAVLVGDPGRA 183 (218)
T ss_pred cceeEEEeeceecCchHHHHHHH-HHHHHH-hCCCEEEEeCCCCC
Confidence 789999988777544 4455666 777777 5555444 443333
No 237
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.50 E-value=0.00014 Score=58.82 Aligned_cols=87 Identities=18% Similarity=0.162 Sum_probs=65.8
Q ss_pred hHHHHHHHHhhCC---CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhh
Q 037961 20 PKELFKLIASKTP---KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITE 89 (262)
Q Consensus 20 p~~~~~~l~~~~~---~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~ 89 (262)
|+.+...++.... ....|+|.-||.|..+.+.+.++..|+++|++|.-+..|+.+ ..+.|+++|.+ ..
T Consensus 78 pe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~l--d~ 155 (263)
T KOG2730|consen 78 PEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFL--DL 155 (263)
T ss_pred cHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEechHH--HH
Confidence 5666666666542 557789999999999999999999999999999999999974 57888888732 22
Q ss_pred hhhccCCCCceeeEEEccc
Q 037961 90 LEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 90 ~~~~~~~~~~~D~V~~~~~ 108 (262)
+..+.+....+|+|..+..
T Consensus 156 ~~~lq~~K~~~~~vf~spp 174 (263)
T KOG2730|consen 156 ASKLKADKIKYDCVFLSPP 174 (263)
T ss_pred HHHHhhhhheeeeeecCCC
Confidence 4445555555777765444
No 238
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.47 E-value=0.0015 Score=63.12 Aligned_cols=112 Identities=15% Similarity=0.107 Sum_probs=72.3
Q ss_pred hHHHHHHHHhhC---CCCCeEEEEcCcccHhHHHHHhh------------------------------------------
Q 037961 20 PKELFKLIASKT---PKRNLAWDVGTRSGQAAASLAQI------------------------------------------ 54 (262)
Q Consensus 20 p~~~~~~l~~~~---~~~~~vlDvGcG~G~~~~~l~~~------------------------------------------ 54 (262)
.+.+...|+... .++..++|.+||+|.+....+..
T Consensus 174 ~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~ 253 (702)
T PRK11783 174 KENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLA 253 (702)
T ss_pred cHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 345555554443 35678999999999998775431
Q ss_pred --CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccC--CCCceeeEEEccccccC--C---hhHHH
Q 037961 55 --YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVA--TQSSVDLVTIASALHWF--D---LPQFY 118 (262)
Q Consensus 55 --~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~~~D~V~~~~~~~~~--d---~~~~l 118 (262)
..+++|+|+++.+++.|+++ ..+.+..+| +.+++. ..+++|+|+++....-- + ...++
T Consensus 254 ~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D------~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY 327 (702)
T PRK11783 254 ELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKD------VADLKNPLPKGPTGLVISNPPYGERLGEEPALIALY 327 (702)
T ss_pred ccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCC------hhhcccccccCCCCEEEECCCCcCccCchHHHHHHH
Confidence 12689999999999999864 235666654 444332 23579999999776422 2 23344
Q ss_pred HHHHHh---hcCCCeEEEEEecC
Q 037961 119 KQVKWV---LKKPSGVIAAWTYT 138 (262)
Q Consensus 119 ~~~~r~---Lk~pgG~l~i~~~~ 138 (262)
+++.+. .. +|+.+++.+..
T Consensus 328 ~~lg~~lk~~~-~g~~~~llt~~ 349 (702)
T PRK11783 328 SQLGRRLKQQF-GGWNAALFSSS 349 (702)
T ss_pred HHHHHHHHHhC-CCCeEEEEeCC
Confidence 444444 44 78888875543
No 239
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.34 E-value=0.0025 Score=50.50 Aligned_cols=95 Identities=17% Similarity=0.064 Sum_probs=63.1
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcCCCceEEeCC--C---CchhhhhhccCCCCceeeE
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKLPNIRYQLTP--T---MSITELEQNVATQSSVDLV 103 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~D~V 103 (262)
.++.+|||+||.+|.+++...++ ..-|.|||+-.- ...+++..+.+. . ....-.+. +++-.+|+|
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----~p~~Ga~~i~~~dvtdp~~~~ki~e~--lp~r~VdvV 140 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----EPPEGATIIQGNDVTDPETYRKIFEA--LPNRPVDVV 140 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----cCCCCcccccccccCCHHHHHHHHHh--CCCCcccEE
Confidence 58899999999999999988775 246899998432 223566666652 1 00011222 378899999
Q ss_pred EEccccc-----cCChhHHHHHH-------HHhhcCCCeEEEE
Q 037961 104 TIASALH-----WFDLPQFYKQV-------KWVLKKPSGVIAA 134 (262)
Q Consensus 104 ~~~~~~~-----~~d~~~~l~~~-------~r~Lk~pgG~l~i 134 (262)
++..+-. -.|....++-| ...++ |+|.+++
T Consensus 141 lSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~-p~g~fvc 182 (232)
T KOG4589|consen 141 LSDMAPNATGVRIRDHYRSIELCDSALLFALTLLI-PNGSFVC 182 (232)
T ss_pred EeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcC-CCcEEEE
Confidence 9864432 23555555555 44578 9999998
No 240
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=97.34 E-value=0.00011 Score=53.18 Aligned_cols=92 Identities=20% Similarity=0.204 Sum_probs=39.5
Q ss_pred EEEcCcccHhHHHHHhh---C--CeEEEEcCCHH---HHHHHhc---CCCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961 38 WDVGTRSGQAAASLAQI---Y--QHVIATDTSPK---QLKFAIK---LPNIRYQLTPTMSITELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 38 lDvGcG~G~~~~~l~~~---~--~~v~~vD~s~~---~~~~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~ 106 (262)
||+|+..|..+..+++. . .+++++|+.+. .-+..++ ..+++++.++.. ..+..++ .+++|+|+..
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--~~l~~~~--~~~~dli~iD 76 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSP--DFLPSLP--DGPIDLIFID 76 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-TH--HHHHHHH--H--EEEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcH--HHHHHcC--CCCEEEEEEC
Confidence 68999999999888763 2 37999999993 3333332 256888887720 1223332 5789999976
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
..-.+-.....++.+.+.|+ |||++++
T Consensus 77 g~H~~~~~~~dl~~~~~~l~-~ggviv~ 103 (106)
T PF13578_consen 77 GDHSYEAVLRDLENALPRLA-PGGVIVF 103 (106)
T ss_dssp S---HHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcC-CCeEEEE
Confidence 53222245567888999999 9998876
No 241
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.32 E-value=0.00034 Score=53.40 Aligned_cols=38 Identities=24% Similarity=0.316 Sum_probs=34.0
Q ss_pred eEEEEcCcccHhHHHHHhhCC--eEEEEcCCHHHHHHHhc
Q 037961 36 LAWDVGTRSGQAAASLAQIYQ--HVIATDTSPKQLKFAIK 73 (262)
Q Consensus 36 ~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~ 73 (262)
+++|+|||.|..+..++..+. +++++|+++.+.+.+++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~ 40 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEE 40 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHH
Confidence 479999999999999988765 69999999999998875
No 242
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.32 E-value=0.00074 Score=51.72 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=37.2
Q ss_pred CCCCeEEEEcCcccHhHHHHHh------hCCeEEEEcCCHHHHHHHhc
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQ------IYQHVIATDTSPKQLKFAIK 73 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~------~~~~v~~vD~s~~~~~~a~~ 73 (262)
.+...|+|+|||.|.+++.|+. ...+|+++|.++..++.+.+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~ 71 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQK 71 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHH
Confidence 4678899999999999999988 36799999999999988875
No 243
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.20 E-value=0.0028 Score=53.87 Aligned_cols=94 Identities=13% Similarity=0.114 Sum_probs=57.0
Q ss_pred CCeEEEEcCcccHhHHH-HHhh---CCeEEEEcCCHHHHHHHhcC--------CCceEEeCCCCchhhhhhccCCCCcee
Q 037961 34 RNLAWDVGTRSGQAAAS-LAQI---YQHVIATDTSPKQLKFAIKL--------PNIRYQLTPTMSITELEQNVATQSSVD 101 (262)
Q Consensus 34 ~~~vlDvGcG~G~~~~~-l~~~---~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~D 101 (262)
..+|+=||||+=-+|.. +++. +..|+++|+++..++.+++. .++.+..+| +.+....-..||
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d------~~~~~~dl~~~D 194 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITAD------VLDVTYDLKEYD 194 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-------GGGG-GG----S
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecc------hhccccccccCC
Confidence 46899999998766654 4433 46799999999999998752 467777765 333332346799
Q ss_pred eEEEccccccC--ChhHHHHHHHHhhcCCCeEEEE
Q 037961 102 LVTIASALHWF--DLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 102 ~V~~~~~~~~~--d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+|+.+.....- +..+++..+.+.++ ||..+++
T Consensus 195 vV~lAalVg~~~e~K~~Il~~l~~~m~-~ga~l~~ 228 (276)
T PF03059_consen 195 VVFLAALVGMDAEPKEEILEHLAKHMA-PGARLVV 228 (276)
T ss_dssp EEEE-TT-S----SHHHHHHHHHHHS--TTSEEEE
T ss_pred EEEEhhhcccccchHHHHHHHHHhhCC-CCcEEEE
Confidence 99866555433 67779999999999 9998887
No 244
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.10 E-value=0.0066 Score=53.78 Aligned_cols=100 Identities=24% Similarity=0.222 Sum_probs=70.0
Q ss_pred CCCeEEEEcCcc-cHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCC-ceeeEEEcc
Q 037961 33 KRNLAWDVGTRS-GQAAASLAQI-Y-QHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQS-SVDLVTIAS 107 (262)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~D~V~~~~ 107 (262)
++.+|+=+|||+ |.++..+++. | .+|+++|.++.-++.|++.-........ .... ...-.....+ .+|+|+-..
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~-~~~~~~~t~g~g~D~vie~~ 246 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDA-GAEILELTGGRGADVVIEAV 246 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccH-HHHHHHHhCCCCCCEEEECC
Confidence 444899999998 9888888876 4 5899999999999999985444443332 1000 0001112233 699999655
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
. ...++..+.++++ |||++++.....
T Consensus 247 G-----~~~~~~~ai~~~r-~gG~v~~vGv~~ 272 (350)
T COG1063 247 G-----SPPALDQALEALR-PGGTVVVVGVYG 272 (350)
T ss_pred C-----CHHHHHHHHHHhc-CCCEEEEEeccC
Confidence 5 3558999999999 999999866653
No 245
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0039 Score=55.05 Aligned_cols=84 Identities=14% Similarity=0.062 Sum_probs=58.9
Q ss_pred HHHHHHHHhhC--CCCCeEEEEcCcccHhHHHHHhhCC-----------------------------------------e
Q 037961 21 KELFKLIASKT--PKRNLAWDVGTRSGQAAASLAQIYQ-----------------------------------------H 57 (262)
Q Consensus 21 ~~~~~~l~~~~--~~~~~vlDvGcG~G~~~~~l~~~~~-----------------------------------------~ 57 (262)
+.+...|+... .++..++|-=||+|++....+-.+. .
T Consensus 177 etLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~ 256 (381)
T COG0116 177 ETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPI 256 (381)
T ss_pred HHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccce
Confidence 34444444333 3456889999999999887765432 3
Q ss_pred EEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961 58 VIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH 110 (262)
Q Consensus 58 v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~ 110 (262)
++|+|+++.|++.|+.+ ..|+|.+++ +..+.-+-..+|+|+||...-
T Consensus 257 ~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d------~~~l~~~~~~~gvvI~NPPYG 310 (381)
T COG0116 257 IYGSDIDPRHIEGAKANARAAGVGDLIEFKQAD------ATDLKEPLEEYGVVISNPPYG 310 (381)
T ss_pred EEEecCCHHHHHHHHHHHHhcCCCceEEEEEcc------hhhCCCCCCcCCEEEeCCCcc
Confidence 77999999999999864 457777765 444442336899999987654
No 246
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0067 Score=50.89 Aligned_cols=95 Identities=15% Similarity=0.188 Sum_probs=66.7
Q ss_pred CCCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCce
Q 037961 31 TPKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSV 100 (262)
Q Consensus 31 ~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (262)
+.++.+|+|-|.|+|.++..+++.- .+++..|....-.+.|++. .++.+...|.. -...+..+..+
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc----~~GF~~ks~~a 178 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVC----GSGFLIKSLKA 178 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecc----cCCcccccccc
Confidence 3689999999999999999998863 5899999998888888751 56676665510 01112236778
Q ss_pred eeEEEccccccCChhHHHHHHHHhhcCCCe-EEEE
Q 037961 101 DLVTIASALHWFDLPQFYKQVKWVLKKPSG-VIAA 134 (262)
Q Consensus 101 D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG-~l~i 134 (262)
|.|+-...-.| .++-.++.+|| .+| +|+.
T Consensus 179 DaVFLDlPaPw----~AiPha~~~lk-~~g~r~cs 208 (314)
T KOG2915|consen 179 DAVFLDLPAPW----EAIPHAAKILK-DEGGRLCS 208 (314)
T ss_pred ceEEEcCCChh----hhhhhhHHHhh-hcCceEEe
Confidence 99986655444 45666677888 555 5544
No 247
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.96 E-value=0.0018 Score=53.16 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=45.7
Q ss_pred hCCCChHHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc
Q 037961 15 ARPNYPKELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK 73 (262)
Q Consensus 15 ~rp~yp~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~ 73 (262)
|-...|.++++.+.... .++..|||--||+|+.+......+.+.+|+|+++..++.|++
T Consensus 172 h~~~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 172 HPTQKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred eeecCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 34466888888877654 689999999999999999999999999999999999998863
No 248
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.90 E-value=0.0021 Score=55.19 Aligned_cols=77 Identities=18% Similarity=0.135 Sum_probs=40.0
Q ss_pred CCeEEEEcCcccH-hHHHHH-hhCCeEEEEcCCHHHHHHHhcC--------CCceEEeCC-CCchhhhhhccCCCCceee
Q 037961 34 RNLAWDVGTRSGQ-AAASLA-QIYQHVIATDTSPKQLKFAIKL--------PNIRYQLTP-TMSITELEQNVATQSSVDL 102 (262)
Q Consensus 34 ~~~vlDvGcG~G~-~~~~l~-~~~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~-~~~~~~~~~~~~~~~~~D~ 102 (262)
.-++||||+|... +.+.-+ .++.+++|+|+++..++.|++. ..|+++... .-.+ +..+..++..||+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i--~~~i~~~~e~~df 180 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNI--FDGIIQPNERFDF 180 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SS--TTTSTT--S-EEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCcccc--chhhhcccceeeE
Confidence 4578999999863 333333 3589999999999999999852 346665443 1000 1122224568999
Q ss_pred EEEccccccC
Q 037961 103 VTIASALHWF 112 (262)
Q Consensus 103 V~~~~~~~~~ 112 (262)
++|+..||-.
T Consensus 181 tmCNPPFy~s 190 (299)
T PF05971_consen 181 TMCNPPFYSS 190 (299)
T ss_dssp EEE-----SS
T ss_pred EecCCccccC
Confidence 9999999866
No 249
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=96.83 E-value=0.016 Score=51.86 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=69.8
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCc-h-hhhhhccCCCCceeeEEEc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMS-I-TELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~D~V~~~ 106 (262)
.++.+||.+|||+ |..+..+++. +. +++++|.++++++.+++.....++...... . ..+..+ .....+|+|+-.
T Consensus 183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~-~~~~~~D~vld~ 261 (386)
T cd08283 183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALREL-TGGRGPDVCIDA 261 (386)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHH-cCCCCCCEEEEC
Confidence 4678899999998 8888888875 65 599999999999999876344443322110 0 111122 133469999864
Q ss_pred cccc---------------cC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 107 SALH---------------WF-DLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 107 ~~~~---------------~~-d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
..-+ -. |....+.++.+.|+ ++|+++++.
T Consensus 262 vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~G~iv~~g 306 (386)
T cd08283 262 VGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVR-KGGTVSIIG 306 (386)
T ss_pred CCCcccccccccccccccccccCchHHHHHHHHHhc-cCCEEEEEc
Confidence 3211 11 45668899999999 999998864
No 250
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.80 E-value=0.011 Score=51.63 Aligned_cols=96 Identities=20% Similarity=0.162 Sum_probs=69.4
Q ss_pred CCCCCeEEEEcCc-ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961 31 TPKRNLAWDVGTR-SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 31 ~~~~~~vlDvGcG-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~ 108 (262)
.+++..|+=+|+| .|..+.++++ .+++|+++|.|++-++.|+++-.-.++.... ....+.. .+.||+|+..-
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~--~~~~~~~---~~~~d~ii~tv- 237 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSD--SDALEAV---KEIADAIIDTV- 237 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCC--chhhHHh---HhhCcEEEECC-
Confidence 4578888888887 3667778887 5999999999999999999875444444320 0112222 12399998643
Q ss_pred cccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
. ...+....+.|+ +||++++....
T Consensus 238 ----~-~~~~~~~l~~l~-~~G~~v~vG~~ 261 (339)
T COG1064 238 ----G-PATLEPSLKALR-RGGTLVLVGLP 261 (339)
T ss_pred ----C-hhhHHHHHHHHh-cCCEEEEECCC
Confidence 3 678889999999 99999996655
No 251
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.76 E-value=0.011 Score=51.09 Aligned_cols=90 Identities=10% Similarity=0.109 Sum_probs=63.9
Q ss_pred hCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCch
Q 037961 15 ARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSI 87 (262)
Q Consensus 15 ~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~ 87 (262)
|-|...+++++.+. ..++..++|.-||.|..|..++.. ..+|+|+|.++.+++.+++. .++.++.++ +
T Consensus 4 H~pVll~Evl~~L~--~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~n---F 78 (305)
T TIGR00006 4 HQSVLLDEVVEGLN--IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDN---F 78 (305)
T ss_pred CcchhHHHHHHhcC--cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCC---H
Confidence 45666666666653 246678999999999999999876 37899999999999998753 367777766 1
Q ss_pred hhhhh-cc-CCCCceeeEEEcccc
Q 037961 88 TELEQ-NV-ATQSSVDLVTIASAL 109 (262)
Q Consensus 88 ~~~~~-~~-~~~~~~D~V~~~~~~ 109 (262)
.++.. +. ....++|.|+...++
T Consensus 79 ~~l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 79 ANFFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred HHHHHHHHhcCCCcccEEEEeccC
Confidence 12211 11 133579999986655
No 252
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.0015 Score=50.43 Aligned_cols=107 Identities=18% Similarity=0.191 Sum_probs=70.7
Q ss_pred CCCeEEEEcCc-ccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC--CC----ceEEeCCCCchhhhhhccCCCCceeeE
Q 037961 33 KRNLAWDVGTR-SGQAAASLAQI--YQHVIATDTSPKQLKFAIKL--PN----IRYQLTPTMSITELEQNVATQSSVDLV 103 (262)
Q Consensus 33 ~~~~vlDvGcG-~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~D~V 103 (262)
.+..|||+|.| +|..+..++-. ...|..+|-++..++..++. .| .+-...-.+....+.. ..+...||.|
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqs-q~eq~tFDiI 107 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQS-QQEQHTFDII 107 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHH-HHhhCcccEE
Confidence 45778999999 57777777654 56899999999998877652 11 1111000111111111 1245689999
Q ss_pred EEccccccC-ChhHHHHHHHHhhcCCCeEEEEEecCCCc
Q 037961 104 TIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTYTMPE 141 (262)
Q Consensus 104 ~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~ 141 (262)
+|+-++..- -.+.+..-+.++|+ |.|.-.++......
T Consensus 108 laADClFfdE~h~sLvdtIk~lL~-p~g~Al~fsPRRg~ 145 (201)
T KOG3201|consen 108 LAADCLFFDEHHESLVDTIKSLLR-PSGRALLFSPRRGQ 145 (201)
T ss_pred EeccchhHHHHHHHHHHHHHHHhC-cccceeEecCcccc
Confidence 999998766 45668889999999 99997776665543
No 253
>PRK11524 putative methyltransferase; Provisional
Probab=96.75 E-value=0.0041 Score=53.42 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=50.3
Q ss_pred CChHHHHHHHHhhC-CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC
Q 037961 18 NYPKELFKLIASKT-PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL 74 (262)
Q Consensus 18 ~yp~~~~~~l~~~~-~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~ 74 (262)
..|.++++.+.... .++.+|||--||+|+.+....+.+.+.+|+|++++.++.|+++
T Consensus 192 ~kP~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~R 249 (284)
T PRK11524 192 QKPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRR 249 (284)
T ss_pred cChHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHH
Confidence 45788888877665 6899999999999999999999999999999999999988864
No 254
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.73 E-value=0.0024 Score=52.13 Aligned_cols=116 Identities=20% Similarity=0.195 Sum_probs=76.2
Q ss_pred CCCeEEEEcCcccHhHHHHHhh--------CC---eEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhc--cCCCCc
Q 037961 33 KRNLAWDVGTRSGQAAASLAQI--------YQ---HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQN--VATQSS 99 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~--------~~---~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 99 (262)
.-.+++|+.+.+|++++.|.++ +. .|++||+-+- .-.+++.-+++|.-....++.+ .+...+
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----aPI~GV~qlq~DIT~~stae~Ii~hfggek 115 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----APIEGVIQLQGDITSASTAEAIIEHFGGEK 115 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----CccCceEEeecccCCHhHHHHHHHHhCCCC
Confidence 4567899999999999998864 12 2999999632 2346777787772222334442 256778
Q ss_pred eeeEEEc-----cccccCC-------hhHHHHHHHHhhcCCCeEEEE--EecCCC-cccHHHHHhhcccc
Q 037961 100 VDLVTIA-----SALHWFD-------LPQFYKQVKWVLKKPSGVIAA--WTYTMP-EINESVGAVFKPFD 154 (262)
Q Consensus 100 ~D~V~~~-----~~~~~~d-------~~~~l~~~~r~Lk~pgG~l~i--~~~~~~-~~~~~~~~~~~~~~ 154 (262)
.|+|+|. ..+|-+| ...++.-...+|| |||.|+. +--.+. .+..+++..|..+.
T Consensus 116 AdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk-~Gg~FVaKifRg~~tslLysql~~ff~kv~ 184 (294)
T KOG1099|consen 116 ADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLK-PGGSFVAKIFRGRDTSLLYSQLRKFFKKVT 184 (294)
T ss_pred ccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheec-CCCeeehhhhccCchHHHHHHHHHHhhcee
Confidence 9999995 4567664 2236777889999 9999996 322222 22455666665543
No 255
>PRK10742 putative methyltransferase; Provisional
Probab=96.72 E-value=0.016 Score=48.35 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=59.8
Q ss_pred eEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc---C------------CCceEEeCCCCchhhhhhccCCCCce
Q 037961 36 LAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK---L------------PNIRYQLTPTMSITELEQNVATQSSV 100 (262)
Q Consensus 36 ~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~---~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (262)
+|||+-+|+|.-+..++.+|++|+++|-++.+....+. . .+++.+.++. .+.+.-...+|
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da-----~~~L~~~~~~f 165 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS-----LTALTDITPRP 165 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH-----HHHHhhCCCCC
Confidence 89999999999999999999999999999998876553 1 1344555541 11121123379
Q ss_pred eeEEEccccccCChhHHHHHHHHhhc
Q 037961 101 DLVTIASALHWFDLPQFYKQVKWVLK 126 (262)
Q Consensus 101 D~V~~~~~~~~~d~~~~l~~~~r~Lk 126 (262)
|+|+....+.+-.......+-.|+++
T Consensus 166 DVVYlDPMfp~~~ksa~vkk~mr~~~ 191 (250)
T PRK10742 166 QVVYLDPMFPHKQKSALVKKEMRVFQ 191 (250)
T ss_pred cEEEECCCCCCCccccchhhhHHHHH
Confidence 99999888877554444444445554
No 256
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=96.60 E-value=0.0055 Score=50.98 Aligned_cols=99 Identities=15% Similarity=0.165 Sum_probs=65.6
Q ss_pred HHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhhc
Q 037961 21 KELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQN 93 (262)
Q Consensus 21 ~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~~ 93 (262)
+.+++.+....++..+|+|||||.=-++..+... +..++|+|++..+++..... ........| ...-
T Consensus 93 d~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~D------l~~~ 166 (251)
T PF07091_consen 93 DEFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRD------LLSD 166 (251)
T ss_dssp HHHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-------TTTS
T ss_pred HHHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEee------eecc
Confidence 6777888777788899999999999999988765 56999999999999987752 344454444 1111
Q ss_pred cCCCCceeeEEEccccccCChhH--HHHHHHHhhc
Q 037961 94 VATQSSVDLVTIASALHWFDLPQ--FYKQVKWVLK 126 (262)
Q Consensus 94 ~~~~~~~D~V~~~~~~~~~d~~~--~l~~~~r~Lk 126 (262)
.+....|+.+..=.+|-++.++ .--++...++
T Consensus 167 -~~~~~~DlaLllK~lp~le~q~~g~g~~ll~~~~ 200 (251)
T PF07091_consen 167 -PPKEPADLALLLKTLPCLERQRRGAGLELLDALR 200 (251)
T ss_dssp -HTTSEESEEEEET-HHHHHHHSTTHHHHHHHHSC
T ss_pred -CCCCCcchhhHHHHHHHHHHHhcchHHHHHHHhC
Confidence 2567799999988888774443 3234444444
No 257
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=96.58 E-value=0.0093 Score=47.61 Aligned_cols=100 Identities=19% Similarity=0.070 Sum_probs=60.9
Q ss_pred CCCCCeEEEEcCcccHhHHHHHhh-CC--eEEEEcCCHH----------HHHHHhc--CCCceEEeCCCCchhhhhhccC
Q 037961 31 TPKRNLAWDVGTRSGQAAASLAQI-YQ--HVIATDTSPK----------QLKFAIK--LPNIRYQLTPTMSITELEQNVA 95 (262)
Q Consensus 31 ~~~~~~vlDvGcG~G~~~~~l~~~-~~--~v~~vD~s~~----------~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~ 95 (262)
++++.+|+|+=.|.|.+|+.++.. +. .|++.-+.+. +-..+++ ..|++.+..+ .-.++
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~------~~A~~- 118 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKP------LVALG- 118 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCc------ccccC-
Confidence 368899999999999999999875 22 4555444322 2222222 2344444332 11122
Q ss_pred CCCceeeEEEccc--------cccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 96 TQSSVDLVTIASA--------LHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 96 ~~~~~D~V~~~~~--------~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
+.+..|++..++. +|--...++..++++.|| |||++++-.+.
T Consensus 119 ~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LK-PGGv~~V~dH~ 168 (238)
T COG4798 119 APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALK-PGGVYLVEDHR 168 (238)
T ss_pred CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcC-CCcEEEEEecc
Confidence 3344555554443 332245668999999999 99999986554
No 258
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=96.57 E-value=0.022 Score=46.24 Aligned_cols=115 Identities=17% Similarity=0.213 Sum_probs=62.1
Q ss_pred CChHHH--HHHHHhhCCCCCeEEEEcCcccHhHHHHHh---h---CCeEEEEcCCHHHHH-HHhcC----CCceEEeCCC
Q 037961 18 NYPKEL--FKLIASKTPKRNLAWDVGTRSGQAAASLAQ---I---YQHVIATDTSPKQLK-FAIKL----PNIRYQLTPT 84 (262)
Q Consensus 18 ~yp~~~--~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~---~---~~~v~~vD~s~~~~~-~a~~~----~~~~~~~~~~ 84 (262)
.+|..+ +..|+... ++.+|+|+|.-.|..+..+|. . ..+|+|+|++..... .+.+. ++|++++++.
T Consensus 16 q~P~Dm~~~qeli~~~-kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds 94 (206)
T PF04989_consen 16 QYPQDMVAYQELIWEL-KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDS 94 (206)
T ss_dssp S-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-S
T ss_pred cCHHHHHHHHHHHHHh-CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCC
Confidence 356554 33344443 446789999999998887765 2 369999999655443 33333 7999999993
Q ss_pred CchhhhhhccCC--CCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 85 MSITELEQNVAT--QSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 85 ~~~~~~~~~~~~--~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
...+.+...... .....+|+-...-.+.+..+.++....+++ +|+.+++
T Consensus 95 ~d~~~~~~v~~~~~~~~~vlVilDs~H~~~hvl~eL~~y~plv~-~G~Y~IV 145 (206)
T PF04989_consen 95 IDPEIVDQVRELASPPHPVLVILDSSHTHEHVLAELEAYAPLVS-PGSYLIV 145 (206)
T ss_dssp SSTHHHHTSGSS----SSEEEEESS----SSHHHHHHHHHHT---TT-EEEE
T ss_pred CCHHHHHHHHHhhccCCceEEEECCCccHHHHHHHHHHhCccCC-CCCEEEE
Confidence 333333333211 233345543333223377788888999999 9999998
No 259
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.56 E-value=0.018 Score=42.94 Aligned_cols=90 Identities=22% Similarity=0.163 Sum_probs=63.6
Q ss_pred cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCC-chhhhhhccCCCCceeeEEEccccccCChhHHHHH
Q 037961 43 RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTM-SITELEQNVATQSSVDLVTIASALHWFDLPQFYKQ 120 (262)
Q Consensus 43 G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~ 120 (262)
|.|..+..+++. |.+|+++|.++.-++.+++..--.+...+.. ..+.+..+. ....+|+|+-... -...++.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~-~~~~~d~vid~~g-----~~~~~~~ 74 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELT-GGRGVDVVIDCVG-----SGDTLQE 74 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHT-TTSSEEEEEESSS-----SHHHHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccccccccccccccccccccc-ccccceEEEEecC-----cHHHHHH
Confidence 468888888875 8999999999999999998743333333321 112233321 3357999985433 3679999
Q ss_pred HHHhhcCCCeEEEEEecCC
Q 037961 121 VKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 121 ~~r~Lk~pgG~l~i~~~~~ 139 (262)
+..+|+ +||++++.....
T Consensus 75 ~~~~l~-~~G~~v~vg~~~ 92 (130)
T PF00107_consen 75 AIKLLR-PGGRIVVVGVYG 92 (130)
T ss_dssp HHHHEE-EEEEEEEESSTS
T ss_pred HHHHhc-cCCEEEEEEccC
Confidence 999999 999999977554
No 260
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.56 E-value=0.0066 Score=49.49 Aligned_cols=89 Identities=22% Similarity=0.145 Sum_probs=54.3
Q ss_pred EEEEcCcccHhHHHHHhhCC--eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCc-eeeEEEc
Q 037961 37 AWDVGTRSGQAAASLAQIYQ--HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSS-VDLVTIA 106 (262)
Q Consensus 37 vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~D~V~~~ 106 (262)
|.||||--|.+...|.+.+. +++++|+++.-++.|++. ..+.+..+|. ++.+ +.+. .|.|+.+
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdG-----L~~l--~~~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDG-----LEVL--KPGEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SG-----GGG----GGG---EEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCc-----cccc--CCCCCCCEEEEe
Confidence 68999999999999999875 799999999999999852 5688887762 2222 3333 7888754
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
.+= .--....+++....++ +...|++
T Consensus 74 GMG-G~lI~~ILe~~~~~~~-~~~~lIL 99 (205)
T PF04816_consen 74 GMG-GELIIEILEAGPEKLS-SAKRLIL 99 (205)
T ss_dssp EE--HHHHHHHHHHTGGGGT-T--EEEE
T ss_pred cCC-HHHHHHHHHhhHHHhc-cCCeEEE
Confidence 321 0012234444445555 4456666
No 261
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.54 E-value=0.0096 Score=51.74 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=59.6
Q ss_pred CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-CCceEEeCCCCchhhh--hhccCC-CCceeeEEE
Q 037961 33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-PNIRYQLTPTMSITEL--EQNVAT-QSSVDLVTI 105 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~--~~~~~~-~~~~D~V~~ 105 (262)
...++||+|.|+|.....+-.- ..+++-++.|+..-+..... .++.....+ +...++ +.++++ ...|++|+.
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td-~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTD-WRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCC-CCCCccchhccCCCccceeehhhh
Confidence 3456999999999776555432 45678888887765544321 122111111 000111 122222 334555554
Q ss_pred ccccccCChhH----HHHHHHHhhcCCCeEEEEEecCCC
Q 037961 106 ASALHWFDLPQ----FYKQVKWVLKKPSGVIAAWTYTMP 140 (262)
Q Consensus 106 ~~~~~~~d~~~----~l~~~~r~Lk~pgG~l~i~~~~~~ 140 (262)
..-+-....++ .++.+..++. |||.|+|...+.+
T Consensus 192 ~~eLl~d~~ek~i~~~ie~lw~l~~-~gg~lVivErGtp 229 (484)
T COG5459 192 LDELLPDGNEKPIQVNIERLWNLLA-PGGHLVIVERGTP 229 (484)
T ss_pred hhhhccccCcchHHHHHHHHHHhcc-CCCeEEEEeCCCc
Confidence 33332332222 7889999999 9999999877655
No 262
>PRK13699 putative methylase; Provisional
Probab=96.52 E-value=0.0085 Score=49.71 Aligned_cols=58 Identities=12% Similarity=0.072 Sum_probs=50.3
Q ss_pred CCChHHHHHHHHhh-CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcC
Q 037961 17 PNYPKELFKLIASK-TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKL 74 (262)
Q Consensus 17 p~yp~~~~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~ 74 (262)
...|.++++.++.. ..++..|||--||+|+.+....+.+.+.+|+|+++...+.+.++
T Consensus 146 ~~kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r 204 (227)
T PRK13699 146 TEKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQR 204 (227)
T ss_pred CCCcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHH
Confidence 35688888887764 46889999999999999999999999999999999999988753
No 263
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=96.50 E-value=0.011 Score=50.71 Aligned_cols=100 Identities=22% Similarity=0.266 Sum_probs=69.8
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhc-c-CCCCce
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQN-V-ATQSSV 100 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~-~-~~~~~~ 100 (262)
.++..|||+++++|.=|.++++. -..+++.|+++.-+...+.+ .++.....| +... + .....|
T Consensus 84 ~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D------~~~~~~~~~~~~f 157 (283)
T PF01189_consen 84 QPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINAD------ARKLDPKKPESKF 157 (283)
T ss_dssp TTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESH------HHHHHHHHHTTTE
T ss_pred cccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeec------ccccccccccccc
Confidence 47788999999999999998885 35899999999998877642 455555443 2222 1 123469
Q ss_pred eeEEEccccc------------cC----C-------hhHHHHHHHHhh----cCCCeEEEEEecC
Q 037961 101 DLVTIASALH------------WF----D-------LPQFYKQVKWVL----KKPSGVIAAWTYT 138 (262)
Q Consensus 101 D~V~~~~~~~------------~~----d-------~~~~l~~~~r~L----k~pgG~l~i~~~~ 138 (262)
|.|+..-..- |. + ..+.+..+.+.+ | |||+++-.+++
T Consensus 158 d~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k-~gG~lvYsTCS 221 (283)
T PF01189_consen 158 DRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFK-PGGRLVYSTCS 221 (283)
T ss_dssp EEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBE-EEEEEEEEESH
T ss_pred chhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhccccc-CCCeEEEEecc
Confidence 9999732211 11 1 223678999999 9 99999986665
No 264
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.50 E-value=0.033 Score=48.98 Aligned_cols=96 Identities=16% Similarity=0.196 Sum_probs=64.3
Q ss_pred CCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961 33 KRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL 109 (262)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~ 109 (262)
++.+||=.|||. |..+.++++. |. +|+++|.+++-++.++++....++.... .++..+....+.+|+|+-...
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~---~~~~~~~~~~g~~D~vid~~G- 244 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQN---DDLDHYKAEKGYFDVSFEVSG- 244 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCc---ccHHHHhccCCCCCEEEECCC-
Confidence 567888889875 7777777765 66 6999999999999998763222222211 112222112245899885433
Q ss_pred ccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 110 HWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
....++.+.++|+ +||+++++..
T Consensus 245 ----~~~~~~~~~~~l~-~~G~iv~~G~ 267 (343)
T PRK09880 245 ----HPSSINTCLEVTR-AKGVMVQVGM 267 (343)
T ss_pred ----CHHHHHHHHHHhh-cCCEEEEEcc
Confidence 2357888999999 9999998664
No 265
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.46 E-value=0.026 Score=52.28 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=69.0
Q ss_pred CCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCC--CC---ch-------hhh-hh--ccC
Q 037961 33 KRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTP--TM---SI-------TEL-EQ--NVA 95 (262)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~--~~---~~-------~~~-~~--~~~ 95 (262)
++.+|+=+|||. |..+...++. |++|+++|.+++-++.+++. +..+..-+ +. .. .+. +. -.+
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl-GA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~ 242 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM-GAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF 242 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence 678999999997 8788777764 88999999999999999886 34432111 00 00 010 00 001
Q ss_pred CC--CceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 96 TQ--SSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 96 ~~--~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.+ ..+|+|+..-....- .+..+.+++.+.+| |||+++....
T Consensus 243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mk-pGgvIVdvg~ 286 (509)
T PRK09424 243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMK-PGSVIVDLAA 286 (509)
T ss_pred HhccCCCCEEEECCCCCcccCcchHHHHHHHhcC-CCCEEEEEcc
Confidence 11 469999976665443 33334599999999 9999997655
No 266
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.45 E-value=0.048 Score=47.07 Aligned_cols=101 Identities=16% Similarity=0.121 Sum_probs=70.1
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcCCCceEEeCC-C-Cchhhhhh---ccCCCCceeeE
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-Y-QHVIATDTSPKQLKFAIKLPNIRYQLTP-T-MSITELEQ---NVATQSSVDLV 103 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~---~~~~~~~~D~V 103 (262)
+.+.+||=+|+|+ |.++...++. | .+|+.+|+++.-++.|++. +.+..... . .+.+++.+ -.+....+|.+
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~-Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKF-GATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHh-CCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 5788999999997 8888888775 4 4899999999999999985 33322222 1 11222211 12344558988
Q ss_pred EEccccccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961 104 TIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 104 ~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
+-...+ +..++.+...+| +||++++..+..
T Consensus 247 ~dCsG~-----~~~~~aai~a~r-~gGt~vlvg~g~ 276 (354)
T KOG0024|consen 247 FDCSGA-----EVTIRAAIKATR-SGGTVVLVGMGA 276 (354)
T ss_pred EEccCc-----hHHHHHHHHHhc-cCCEEEEeccCC
Confidence 865554 467777889999 999988866554
No 267
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.35 E-value=0.023 Score=50.70 Aligned_cols=25 Identities=24% Similarity=0.503 Sum_probs=20.8
Q ss_pred hhhhccCCCCceeeEEEccccccCC
Q 037961 89 ELEQNVATQSSVDLVTIASALHWFD 113 (262)
Q Consensus 89 ~~~~~~~~~~~~D~V~~~~~~~~~d 113 (262)
.+..--+|+++.++++++.++||+.
T Consensus 152 SFY~RLfP~~Slh~~~Ss~slHWLS 176 (386)
T PLN02668 152 SFYRRLFPARSIDVFHSAFSLHWLS 176 (386)
T ss_pred cccccccCCCceEEEEeeccceecc
Confidence 4445557999999999999999993
No 268
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=96.31 E-value=0.064 Score=46.57 Aligned_cols=100 Identities=18% Similarity=0.181 Sum_probs=66.2
Q ss_pred CCCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceeeEEEcc
Q 037961 31 TPKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~V~~~~ 107 (262)
..++.+||..|+|. |..+..+++. |.+|++++.++...+.+++.. +..+... .....+.-. ....+.+|+|+...
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g-~~~~~~~~~~~~~~~~~-~~~~~~~D~vid~~ 240 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG-ADEVLNSLDDSPKDKKA-AGLGGGFDVIFDFV 240 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC-CCEEEcCCCcCHHHHHH-HhcCCCceEEEECC
Confidence 34667788888874 7888777774 889999999999998887642 3333222 111111101 12456799988542
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
. ....++++.+.|+ ++|+++.+...
T Consensus 241 g-----~~~~~~~~~~~l~-~~G~~v~~g~~ 265 (338)
T cd08254 241 G-----TQPTFEDAQKAVK-PGGRIVVVGLG 265 (338)
T ss_pred C-----CHHHHHHHHHHhh-cCCEEEEECCC
Confidence 2 2457889999999 99999986543
No 269
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=96.18 E-value=0.027 Score=48.30 Aligned_cols=112 Identities=18% Similarity=0.162 Sum_probs=71.7
Q ss_pred HHHHHHHHhhCCC------CCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHh-------cC-------------
Q 037961 21 KELFKLIASKTPK------RNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAI-------KL------------- 74 (262)
Q Consensus 21 ~~~~~~l~~~~~~------~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~-------~~------------- 74 (262)
..+++.|.++.|+ ...||--|||.|.++..|+..|..+-|-+.|--|+=... ..
T Consensus 132 kpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~s 211 (369)
T KOG2798|consen 132 KPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYS 211 (369)
T ss_pred hhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccc
Confidence 5667777777764 578899999999999999999999999898888765321 10
Q ss_pred --------------CCceEE-eCC---CC--chhhhhhc-c--CCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCe
Q 037961 75 --------------PNIRYQ-LTP---TM--SITELEQN-V--ATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSG 130 (262)
Q Consensus 75 --------------~~~~~~-~~~---~~--~~~~~~~~-~--~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG 130 (262)
|.+... ... .+ -.+|+-+. + -..++||+|+.++-+.-. +.-..+..+..+|| |||
T Consensus 212 n~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk-~GG 290 (369)
T KOG2798|consen 212 NSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILK-PGG 290 (369)
T ss_pred cccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhcc-CCc
Confidence 001000 000 00 00222221 1 122469999977433333 34458899999999 999
Q ss_pred EEE
Q 037961 131 VIA 133 (262)
Q Consensus 131 ~l~ 133 (262)
+.+
T Consensus 291 vWi 293 (369)
T KOG2798|consen 291 VWI 293 (369)
T ss_pred EEE
Confidence 876
No 270
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.07 E-value=0.065 Score=49.66 Aligned_cols=117 Identities=21% Similarity=0.262 Sum_probs=78.0
Q ss_pred hHHHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhh----C--CeEEEEcCCHHHHHHHhcC---CCceE----EeCCC
Q 037961 20 PKELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQI----Y--QHVIATDTSPKQLKFAIKL---PNIRY----QLTPT 84 (262)
Q Consensus 20 p~~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~----~--~~v~~vD~s~~~~~~a~~~---~~~~~----~~~~~ 84 (262)
|.++.+.|...+. +..+|+|-.||+|......... . ..+.|.|.++.....|+.+ .++.+ ..++.
T Consensus 171 P~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dt 250 (489)
T COG0286 171 PREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDT 250 (489)
T ss_pred hHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccc
Confidence 7788888877764 6678999999999877766543 1 4588999999999998853 34433 22221
Q ss_pred CchhhhhhccCCCCceeeEEEccccc---cC-C---------------------h-hHHHHHHHHhhcCCCeEEEEEecC
Q 037961 85 MSITELEQNVATQSSVDLVTIASALH---WF-D---------------------L-PQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 85 ~~~~~~~~~~~~~~~~D~V~~~~~~~---~~-d---------------------~-~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
+....... ....+.||.|+++..+- |- + . ..+++.+...|+ |||+.++....
T Consensus 251 l~~~~~~~-~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~-~~g~aaivl~~ 328 (489)
T COG0286 251 LSNPKHDD-KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLK-PGGRAAIVLPD 328 (489)
T ss_pred ccCCcccc-cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcC-CCceEEEEecC
Confidence 11100000 22447799999986663 22 1 1 347899999999 99987775544
No 271
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.06 E-value=0.032 Score=48.22 Aligned_cols=90 Identities=14% Similarity=0.186 Sum_probs=57.5
Q ss_pred hCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCch
Q 037961 15 ARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSI 87 (262)
Q Consensus 15 ~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~ 87 (262)
|.|...++.++.|. ..++...+|.--|.|..|..+++. ..+++|+|.++.+++.+++. .++.++.+. +
T Consensus 4 H~PVll~Evl~~L~--~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~---F 78 (310)
T PF01795_consen 4 HIPVLLKEVLEALN--PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGN---F 78 (310)
T ss_dssp ---TTHHHHHHHHT----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES----G
T ss_pred eecccHHHHHHhhC--cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEecc---H
Confidence 66778888888876 346778999999999999999875 57999999999999988864 467777665 2
Q ss_pred hhhhhcc--C-CCCceeeEEEcccc
Q 037961 88 TELEQNV--A-TQSSVDLVTIASAL 109 (262)
Q Consensus 88 ~~~~~~~--~-~~~~~D~V~~~~~~ 109 (262)
.++...- . ...++|.|++..++
T Consensus 79 ~~l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 79 SNLDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp GGHHHHHHHTTTTS-EEEEEEE-S-
T ss_pred HHHHHHHHHccCCCccCEEEEcccc
Confidence 2222211 1 34578888875444
No 272
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=96.01 E-value=0.056 Score=45.19 Aligned_cols=98 Identities=13% Similarity=0.146 Sum_probs=63.8
Q ss_pred CCCeEEEEcCcccHhHHHHHh-hCCeEEEEcCCHHHHHHHhc--C-------C--CceEEeCCCCchh-hhhhccCCCCc
Q 037961 33 KRNLAWDVGTRSGQAAASLAQ-IYQHVIATDTSPKQLKFAIK--L-------P--NIRYQLTPTMSIT-ELEQNVATQSS 99 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~--~-------~--~~~~~~~~~~~~~-~~~~~~~~~~~ 99 (262)
+...|||+|+|+|-.+...+. .+++|+..|+...+...... . . .+.+...+ |... +....+ +. .
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~-Wg~~~~~~~~~-~~-~ 162 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILV-WGNALDVSFRL-PN-P 162 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEe-cCCcccHhhcc-CC-c
Confidence 456799999999988887777 47899999998665543221 1 1 22222222 1111 112221 22 2
Q ss_pred eeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961 100 VDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 100 ~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+|+|+++-++..- .++.+..-++.+|- -+|++.+
T Consensus 163 ~DlilasDvvy~~~~~e~Lv~tla~ll~-~~~~i~l 197 (248)
T KOG2793|consen 163 FDLILASDVVYEEESFEGLVKTLAFLLA-KDGTIFL 197 (248)
T ss_pred ccEEEEeeeeecCCcchhHHHHHHHHHh-cCCeEEE
Confidence 9999999999877 78888888999998 6774444
No 273
>PHA01634 hypothetical protein
Probab=95.97 E-value=0.057 Score=40.16 Aligned_cols=70 Identities=13% Similarity=-0.007 Sum_probs=50.8
Q ss_pred CCCeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEE
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTI 105 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~ 105 (262)
.+.+|+|+|++-|..+..++-+|+ .|+++++++...+..++.-+...++..... -.+|+-.-++||+.++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~---~~eW~~~Y~~~Di~~i 98 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDKAVM---KGEWNGEYEDVDIFVM 98 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeeceee---cccccccCCCcceEEE
Confidence 678899999999999999998876 799999999999988874333333322111 1234445677888774
No 274
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.93 E-value=0.014 Score=53.19 Aligned_cols=138 Identities=15% Similarity=0.180 Sum_probs=74.9
Q ss_pred hhhHHHHHHHHhhCCCChHHHHHHHHh-hC--CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceE
Q 037961 3 ELFIKQANLYAVARPNYPKELFKLIAS-KT--PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRY 79 (262)
Q Consensus 3 ~~F~~~a~~Y~~~rp~yp~~~~~~l~~-~~--~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 79 (262)
+.|.++.+.+.+.--.| .. +.. .+ ..-+.|+|..+|.|.++..|.... |....+-|. .......+-+
T Consensus 337 e~F~~Dt~~Wk~~V~~Y-~~----l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~--VWVMNVVP~---~~~ntL~vIy 406 (506)
T PF03141_consen 337 EEFKEDTKHWKKRVSHY-KK----LLGLAIKWGRIRNVMDMNAGYGGFAAALIDDP--VWVMNVVPV---SGPNTLPVIY 406 (506)
T ss_pred HHHHHHHHHHHHHHHHH-HH----hhcccccccceeeeeeecccccHHHHHhccCC--ceEEEeccc---CCCCcchhhh
Confidence 56777777776643222 11 112 22 244779999999999999997754 333333222 0000011111
Q ss_pred EeCCCCchhhh-hhccCCCCceeeEEEccccc----cCChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhccc
Q 037961 80 QLTPTMSITEL-EQNVATQSSVDLVTIASALH----WFDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKPF 153 (262)
Q Consensus 80 ~~~~~~~~~~~-~~~~~~~~~~D~V~~~~~~~----~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~~ 153 (262)
..|-.-...|. |..+.=+.+||+|.+...|- -++.+.++-|+.|+|| |||.++|=. ...+..++..+...+
T Consensus 407 dRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs~~~~rC~~~~illEmDRILR-P~G~~iiRD--~~~vl~~v~~i~~~l 482 (506)
T PF03141_consen 407 DRGLIGVYHDWCEAFSTYPRTYDLLHADGLFSLYKDRCEMEDILLEMDRILR-PGGWVIIRD--TVDVLEKVKKIAKSL 482 (506)
T ss_pred hcccchhccchhhccCCCCcchhheehhhhhhhhcccccHHHHHHHhHhhcC-CCceEEEec--cHHHHHHHHHHHHhC
Confidence 11110000000 11222357899999886663 3367779999999999 999998811 112234555555443
No 275
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.81 E-value=0.0042 Score=47.66 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=37.0
Q ss_pred ccCCCCceeeEEEccccccCC---hhHHHHHHHHhhcCCCeEEEEEec
Q 037961 93 NVATQSSVDLVTIASALHWFD---LPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 93 ~~~~~~~~D~V~~~~~~~~~d---~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.++.+++.|+|++...+.|+- -..++++|+|+|| |||.|-|...
T Consensus 41 ~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lr-p~G~LriAvP 87 (185)
T COG4627 41 SMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLR-PGGKLRIAVP 87 (185)
T ss_pred ccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-cCcEEEEEcC
Confidence 457899999999999998882 3348999999999 9999988443
No 276
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.75 E-value=0.029 Score=45.19 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=31.2
Q ss_pred CeEEEEcCcccHhHHHHHhhCC--eEEEEcCCHHHHHHHh
Q 037961 35 NLAWDVGTRSGQAAASLAQIYQ--HVIATDTSPKQLKFAI 72 (262)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~ 72 (262)
-.+.|||||-|.+...|++.+. -++|.++--...++.+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk 101 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVK 101 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHH
Confidence 4579999999999999999865 4778888777766654
No 277
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=95.70 E-value=0.14 Score=42.70 Aligned_cols=99 Identities=26% Similarity=0.217 Sum_probs=64.4
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCC-chhhhhhccCCCCceeeEEEccc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTM-SITELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~V~~~~~ 108 (262)
.++.+||-.|+|+ |..+..+++ .+.+|++++.++...+.+++......+..... ....+. ....+.+|+|+....
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~~~~d~vi~~~~ 210 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELR--LTGGGGADVVIDAVG 210 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHH--HhcCCCCCEEEECCC
Confidence 5678899999996 767766666 48899999999988887765422122211110 001111 123457999986433
Q ss_pred cccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
....+..+.+.|+ ++|+++.+...
T Consensus 211 -----~~~~~~~~~~~l~-~~G~~v~~~~~ 234 (271)
T cd05188 211 -----GPETLAQALRLLR-PGGRIVVVGGT 234 (271)
T ss_pred -----CHHHHHHHHHhcc-cCCEEEEEccC
Confidence 1256788889999 99999975543
No 278
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=95.69 E-value=0.027 Score=47.86 Aligned_cols=115 Identities=13% Similarity=0.184 Sum_probs=78.4
Q ss_pred CCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC----------CCceEEeCC
Q 037961 16 RPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL----------PNIRYQLTP 83 (262)
Q Consensus 16 rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~~ 83 (262)
|-.|-+.+...-...++....+|-||-|.|.+.+....+ ..++.-+|++...++..++. +++....+|
T Consensus 104 e~~Yqemi~~l~l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGD 183 (337)
T KOG1562|consen 104 EFAYQEMIAHLALCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGD 183 (337)
T ss_pred cccceeeeeccccccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEecc
Confidence 345533333333344567788999999999999888776 45799999999999888763 677777777
Q ss_pred CCchhhhhhccCCCCceeeEEEccccccCC-----hhHHHHHHHHhhcCCCeEEEEE
Q 037961 84 TMSITELEQNVATQSSVDLVTIASALHWFD-----LPQFYKQVKWVLKKPSGVIAAW 135 (262)
Q Consensus 84 ~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d-----~~~~l~~~~r~Lk~pgG~l~i~ 135 (262)
.+.+ .+. ...++||+|+.-.+=.-.+ .+..++.+.+.|| +||++++-
T Consensus 184 G~~f--l~~--~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk-~dgv~~~q 235 (337)
T KOG1562|consen 184 GFLF--LED--LKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALK-GDGVVCTQ 235 (337)
T ss_pred HHHH--HHH--hccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhC-CCcEEEEe
Confidence 2111 111 2478899999643322222 2336778999999 99999873
No 279
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=95.60 E-value=0.18 Score=44.53 Aligned_cols=100 Identities=18% Similarity=0.188 Sum_probs=64.4
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~ 107 (262)
.++.+||=.|||. |..+.++++. |. +|+++|.++..++.+++...-.++.....+. ..+.... ....+|+|+-..
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~-~~~g~d~vid~~ 253 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALT-GGFGADVVIDAV 253 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHh-CCCCCCEEEECC
Confidence 5678888889875 7777777765 76 4999999999999888653222222211000 1122221 233589988432
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
. -...+..+.+.|+ +||+++++...
T Consensus 254 g-----~~~~~~~~~~~~~-~~G~iv~~G~~ 278 (358)
T TIGR03451 254 G-----RPETYKQAFYARD-LAGTVVLVGVP 278 (358)
T ss_pred C-----CHHHHHHHHHHhc-cCCEEEEECCC
Confidence 2 1356788889999 99999986643
No 280
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.47 E-value=0.081 Score=40.26 Aligned_cols=79 Identities=18% Similarity=0.233 Sum_probs=49.8
Q ss_pred eEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccc-----cC--C---hhHHHH
Q 037961 57 HVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH-----WF--D---LPQFYK 119 (262)
Q Consensus 57 ~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~-----~~--d---~~~~l~ 119 (262)
+|+|.|+-+..++..+++ .+++++.... +.+... ++.+++|+|+.|.+.- -+ . .-++++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sH---e~l~~~-i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSH---ENLDEY-IPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-G---GGGGGT---S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCH---HHHHhh-CccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 589999999999988752 3577777652 112222 2336899999886652 11 2 233899
Q ss_pred HHHHhhcCCCeEEEEEecC-CC
Q 037961 120 QVKWVLKKPSGVIAAWTYT-MP 140 (262)
Q Consensus 120 ~~~r~Lk~pgG~l~i~~~~-~~ 140 (262)
.+.++|+ |||.+.+..|. ++
T Consensus 77 ~al~lL~-~gG~i~iv~Y~GH~ 97 (140)
T PF06962_consen 77 AALELLK-PGGIITIVVYPGHP 97 (140)
T ss_dssp HHHHHEE-EEEEEEEEE--STC
T ss_pred HHHHhhc-cCCEEEEEEeCCCC
Confidence 9999999 99999997775 44
No 281
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.31 E-value=0.014 Score=48.31 Aligned_cols=73 Identities=19% Similarity=0.089 Sum_probs=43.0
Q ss_pred CeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc-------C--------CCceEEeCCCCchhhhhhccCCCCc
Q 037961 35 NLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK-------L--------PNIRYQLTPTMSITELEQNVATQSS 99 (262)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-------~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (262)
.+|||+-||-|.=+..++..|++|+++|-||.+....+. . .+++.+.++. .+.+..++.+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~-----~~~L~~~~~s 151 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA-----LEYLRQPDNS 151 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C-----CCHCCCHSS-
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH-----HHHHhhcCCC
Confidence 489999999999999999889999999999987665442 1 2567777652 2223346789
Q ss_pred eeeEEEccccccC
Q 037961 100 VDLVTIASALHWF 112 (262)
Q Consensus 100 ~D~V~~~~~~~~~ 112 (262)
||+|+...++..-
T Consensus 152 ~DVVY~DPMFp~~ 164 (234)
T PF04445_consen 152 FDVVYFDPMFPER 164 (234)
T ss_dssp -SEEEE--S----
T ss_pred CCEEEECCCCCCc
Confidence 9999998887653
No 282
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=95.19 E-value=0.034 Score=45.70 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=56.9
Q ss_pred CCCChHHHHHHHHhhCC----CCCeEEEEcCcccHhHH--HHHhhCCeEEEEcCCHHHHHHHhc----CC----CceEEe
Q 037961 16 RPNYPKELFKLIASKTP----KRNLAWDVGTRSGQAAA--SLAQIYQHVIATDTSPKQLKFAIK----LP----NIRYQL 81 (262)
Q Consensus 16 rp~yp~~~~~~l~~~~~----~~~~vlDvGcG~G~~~~--~l~~~~~~v~~vD~s~~~~~~a~~----~~----~~~~~~ 81 (262)
|..|-.-+.+.|.+..+ ++.++||||.|.--.=- -...+|.+.+|.|+++..++.|+. ++ .++...
T Consensus 57 RAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~ 136 (292)
T COG3129 57 RADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRR 136 (292)
T ss_pred hhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEe
Confidence 44444445555554432 56788999988642211 122468899999999999998874 22 233332
Q ss_pred CCCCchhhhhhccCCCCceeeEEEccccccC
Q 037961 82 TPTMSITELEQNVATQSSVDLVTIASALHWF 112 (262)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~ 112 (262)
...-. .-+..+--.++.||.++|+..||-.
T Consensus 137 qk~~~-~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 137 QKDSD-AIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ccCcc-ccccccccccceeeeEecCCCcchh
Confidence 22000 0011121137789999999999954
No 283
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.06 E-value=0.25 Score=43.52 Aligned_cols=96 Identities=18% Similarity=0.189 Sum_probs=63.0
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcC---CHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDT---SPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~---s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~ 106 (262)
.++.+||=.|+|. |.++.++++. +.+|++++. ++.-++.+++. +...+..... +..... ..+.+|+|+-.
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~-Ga~~v~~~~~---~~~~~~-~~~~~d~vid~ 245 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEEL-GATYVNSSKT---PVAEVK-LVGEFDLIIEA 245 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHc-CCEEecCCcc---chhhhh-hcCCCCEEEEC
Confidence 3667888889885 7777777764 779999986 67777777765 3333322111 111111 12468998854
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
.. ....+.++.++|+ +||+++++...
T Consensus 246 ~g-----~~~~~~~~~~~l~-~~G~~v~~G~~ 271 (355)
T cd08230 246 TG-----VPPLAFEALPALA-PNGVVILFGVP 271 (355)
T ss_pred cC-----CHHHHHHHHHHcc-CCcEEEEEecC
Confidence 33 2347888999999 99999886643
No 284
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.06 E-value=0.036 Score=50.72 Aligned_cols=120 Identities=17% Similarity=0.267 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHhhCCCChHHHHHHHHhhCC-----CCCeEEEEcCcccHhHHHHHh------hCCeEEEEcCCHHHHHHH
Q 037961 3 ELFIKQANLYAVARPNYPKELFKLIASKTP-----KRNLAWDVGTRSGQAAASLAQ------IYQHVIATDTSPKQLKFA 71 (262)
Q Consensus 3 ~~F~~~a~~Y~~~rp~yp~~~~~~l~~~~~-----~~~~vlDvGcG~G~~~~~l~~------~~~~v~~vD~s~~~~~~a 71 (262)
+.|+++.-.|+++ .+.+...|....+ ...+|+-+|+|-|-+.....+ +--++++++-+|..+-..
T Consensus 336 etFEkD~VKY~~Y----q~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL 411 (649)
T KOG0822|consen 336 ETFEKDPVKYDQY----QQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTL 411 (649)
T ss_pred hhhhccchHHHHH----HHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhh
Confidence 5688888888885 4677777777654 235678999999988776544 234789999999998877
Q ss_pred hcC------CCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-C---hhHHHHHHHHhhcCCCeEEEE
Q 037961 72 IKL------PNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-D---LPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 72 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d---~~~~l~~~~r~Lk~pgG~l~i 134 (262)
... ..+..+.. |...|+.+..+.|++++- .+.-| | -.+.+..+.+.|| |.|+.+=
T Consensus 412 ~~~n~~~W~~~Vtii~~------DMR~w~ap~eq~DI~VSE-LLGSFGDNELSPECLDG~q~fLk-pdgIsIP 476 (649)
T KOG0822|consen 412 QNRNFECWDNRVTIISS------DMRKWNAPREQADIIVSE-LLGSFGDNELSPECLDGAQKFLK-PDGISIP 476 (649)
T ss_pred hhhchhhhcCeeEEEec------cccccCCchhhccchHHH-hhccccCccCCHHHHHHHHhhcC-CCceEcc
Confidence 642 45555554 566676456889998863 33334 3 2348889999999 9987764
No 285
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=94.99 E-value=0.27 Score=42.57 Aligned_cols=86 Identities=17% Similarity=0.101 Sum_probs=58.5
Q ss_pred CCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961 33 KRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL 109 (262)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~ 109 (262)
++.++|=+|||. |.++.++++. |++ |+++|.++..++.+.... .+..+ .+ ....+|+|+-...
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~---~i~~~----~~------~~~g~Dvvid~~G- 209 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE---VLDPE----KD------PRRDYRAIYDASG- 209 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc---ccChh----hc------cCCCCCEEEECCC-
Confidence 456778889885 7788877764 765 678899988887776431 11110 00 1345899985433
Q ss_pred ccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 110 HWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
-...+..+.+.|+ +||+++++..
T Consensus 210 ----~~~~~~~~~~~l~-~~G~iv~~G~ 232 (308)
T TIGR01202 210 ----DPSLIDTLVRRLA-KGGEIVLAGF 232 (308)
T ss_pred ----CHHHHHHHHHhhh-cCcEEEEEee
Confidence 2357788999999 9999998664
No 286
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.95 E-value=0.34 Score=42.33 Aligned_cols=91 Identities=13% Similarity=0.035 Sum_probs=60.8
Q ss_pred CCCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961 31 TPKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~ 108 (262)
.+++.+||=.|+|. |..+.++++. |.+|++++.+++-++.+++..--.++... +. ..+.+|+++...+
T Consensus 163 ~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~--------~~--~~~~~d~~i~~~~ 232 (329)
T TIGR02822 163 LPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAY--------DT--PPEPLDAAILFAP 232 (329)
T ss_pred CCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceecccc--------cc--CcccceEEEECCC
Confidence 35678889889764 6666666664 88999999999988888875221111110 00 1235787654322
Q ss_pred cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
. ...+....+.|+ +||+++++..
T Consensus 233 ~-----~~~~~~~~~~l~-~~G~~v~~G~ 255 (329)
T TIGR02822 233 A-----GGLVPPALEALD-RGGVLAVAGI 255 (329)
T ss_pred c-----HHHHHHHHHhhC-CCcEEEEEec
Confidence 1 247888999999 9999988664
No 287
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=94.93 E-value=0.11 Score=42.53 Aligned_cols=77 Identities=19% Similarity=0.231 Sum_probs=56.1
Q ss_pred HHHHHhhCCCCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC-------CCceEEeCCCCchhhhhhcc
Q 037961 24 FKLIASKTPKRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL-------PNIRYQLTPTMSITELEQNV 94 (262)
Q Consensus 24 ~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~ 94 (262)
+..+++..+.+..+.|+||--|.+...|... ...++++|+++.-++.|.++ +.+++..+|. +..+.
T Consensus 7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-----l~~l~ 81 (226)
T COG2384 7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-----LAVLE 81 (226)
T ss_pred HHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-----ccccC
Confidence 4556667777777999999999999999886 45799999999999998752 4566666652 11111
Q ss_pred CCCCceeeEEEc
Q 037961 95 ATQSSVDLVTIA 106 (262)
Q Consensus 95 ~~~~~~D~V~~~ 106 (262)
++..+|.|+.+
T Consensus 82 -~~d~~d~ivIA 92 (226)
T COG2384 82 -LEDEIDVIVIA 92 (226)
T ss_pred -ccCCcCEEEEe
Confidence 23468888854
No 288
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=94.92 E-value=0.38 Score=41.93 Aligned_cols=96 Identities=19% Similarity=0.174 Sum_probs=62.4
Q ss_pred CCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961 33 KRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL 109 (262)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~ 109 (262)
++.+||-.|||. |..+..+++. |. ++++++.++...+.+++...-.++.... .++..+....+.+|+|+....
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~---~~~~~~~~~~~~vd~vld~~g- 240 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLAR---DPLAAYAADKGDFDVVFEASG- 240 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc---hhhhhhhccCCCccEEEECCC-
Confidence 667778888876 7777777764 76 7999999999888776643212222111 011122212345899985433
Q ss_pred ccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 110 HWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
....++++.+.|+ ++|+++.+..
T Consensus 241 ----~~~~~~~~~~~L~-~~G~~v~~g~ 263 (339)
T cd08232 241 ----APAALASALRVVR-PGGTVVQVGM 263 (339)
T ss_pred ----CHHHHHHHHHHHh-cCCEEEEEec
Confidence 1346789999999 9999987653
No 289
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.85 E-value=0.016 Score=41.90 Aligned_cols=35 Identities=23% Similarity=0.650 Sum_probs=28.7
Q ss_pred ceeeEEEccccccCC-------hhHHHHHHHHhhcCCCeEEEE
Q 037961 99 SVDLVTIASALHWFD-------LPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 99 ~~D~V~~~~~~~~~d-------~~~~l~~~~r~Lk~pgG~l~i 134 (262)
.||+|+|.....|+. ...+++.+++.|+ |||.|++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~-pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLR-PGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEE-EEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhC-CCCEEEE
Confidence 489999999888883 3348999999999 9999998
No 290
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.85 E-value=0.25 Score=43.45 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=60.6
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh---CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI---YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~ 107 (262)
+++.+||=+|||+ |..+..++++ +.+|+++|.++.-++.+++. ....... +.. ....+|+|+-..
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~-~~~~~~~------~~~----~~~g~d~viD~~ 230 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFA-DETYLID------DIP----EDLAVDHAFECV 230 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhc-Cceeehh------hhh----hccCCcEEEECC
Confidence 5678899999986 7677666653 46899999999888887752 2211110 110 112489888433
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.- -.....+..+.++|+ +||+++++..
T Consensus 231 G~--~~~~~~~~~~~~~l~-~~G~iv~~G~ 257 (341)
T cd08237 231 GG--RGSQSAINQIIDYIR-PQGTIGLMGV 257 (341)
T ss_pred CC--CccHHHHHHHHHhCc-CCcEEEEEee
Confidence 21 012457889999999 9999998664
No 291
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.74 E-value=0.45 Score=41.49 Aligned_cols=99 Identities=20% Similarity=0.178 Sum_probs=62.3
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~ 108 (262)
.++.+||=.|+|. |.++.++++. |.+ |++++.+++..+.+++..--.++.........+.... ....+|+|+-...
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~-~~~~~d~vid~~g 240 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELT-SGAGADVAIECSG 240 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHh-CCCCCCEEEECCC
Confidence 4677888888864 6666666664 777 9999999999888876532222222110011122221 2346999984322
Q ss_pred cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
....+..+.+.|+ ++|+++++..
T Consensus 241 -----~~~~~~~~~~~l~-~~G~~v~~g~ 263 (339)
T cd08239 241 -----NTAARRLALEAVR-PWGRLVLVGE 263 (339)
T ss_pred -----CHHHHHHHHHHhh-cCCEEEEEcC
Confidence 2346678889999 9999998654
No 292
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.70 E-value=0.4 Score=42.57 Aligned_cols=98 Identities=15% Similarity=0.056 Sum_probs=63.0
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCc-hhhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMS-ITELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~D~V~~~~ 107 (262)
.++.+||=.|+|. |..+.++++. |+ +|+++|.++.-++.+++..-..++...... ...+... ..+.+|+|+-..
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~--~~~g~d~vid~~ 267 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVREL--TGGGVDYAFEMA 267 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHH--hCCCCCEEEECC
Confidence 4667777789875 6677777764 77 699999999999988875322222221100 0111122 123689998432
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
. ....+..+.+.|+ +||+++++..
T Consensus 268 G-----~~~~~~~~~~~l~-~~G~iv~~G~ 291 (371)
T cd08281 268 G-----SVPALETAYEITR-RGGTTVTAGL 291 (371)
T ss_pred C-----ChHHHHHHHHHHh-cCCEEEEEcc
Confidence 2 2357888899999 9999988654
No 293
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.68 E-value=0.39 Score=40.83 Aligned_cols=97 Identities=19% Similarity=0.111 Sum_probs=62.2
Q ss_pred CCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961 33 KRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL 109 (262)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~ 109 (262)
++.+||=.|+|+ |..+..+++. |.+ |+++|.++.-++.+++..--.++..+.. ...+.... ....+|+|+-...
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~-~~~~~~~~-~~~g~d~vid~~G- 196 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVL-AERQGGLQ-NGRGVDVALEFSG- 196 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhh-HHHHHHHh-CCCCCCEEEECCC-
Confidence 667888888875 6666667664 765 9999999998888887532122211110 01111111 2335899885322
Q ss_pred ccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 110 HWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
....++++.+.|+ |+|+++++..
T Consensus 197 ----~~~~~~~~~~~l~-~~G~iv~~G~ 219 (280)
T TIGR03366 197 ----ATAAVRACLESLD-VGGTAVLAGS 219 (280)
T ss_pred ----ChHHHHHHHHHhc-CCCEEEEecc
Confidence 2457888999999 9999998663
No 294
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=94.64 E-value=0.29 Score=39.21 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=77.9
Q ss_pred ChHHH--HHHHHhhCCCCCeEEEEcCcccHhHHHHHh----hC--CeEEEEcCCHHHHH-HHhcCCCceEEeCCCCchhh
Q 037961 19 YPKEL--FKLIASKTPKRNLAWDVGTRSGQAAASLAQ----IY--QHVIATDTSPKQLK-FAIKLPNIRYQLTPTMSITE 89 (262)
Q Consensus 19 yp~~~--~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~----~~--~~v~~vD~s~~~~~-~a~~~~~~~~~~~~~~~~~~ 89 (262)
||..+ ++.|+... +++.|+|.|.-.|..+..++. .| .+|+++|++-..++ .|++.+.+.+++++....+-
T Consensus 54 ~p~D~~~yQellw~~-~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai 132 (237)
T COG3510 54 SPSDMWNYQELLWEL-QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAI 132 (237)
T ss_pred CHHHHHHHHHHHHhc-CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHH
Confidence 46555 44455544 446779999999988888776 35 68999999987765 44557899999998222222
Q ss_pred hhhcc-CCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 90 LEQNV-ATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 90 ~~~~~-~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
+++.. ..++.--+-++--+-|.+ ..-+-++...++|. .|-.+++..
T Consensus 133 ~eqi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~plls-aG~Y~vVeD 180 (237)
T COG3510 133 AEQIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLS-AGDYLVVED 180 (237)
T ss_pred HHHHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhh-cCceEEEec
Confidence 23322 223333455566777777 55567788888888 788888854
No 295
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=94.63 E-value=0.2 Score=44.01 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=68.2
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhCC------eEEEEcCCHHHHHHHhc----C--CCceEEeCC--CCchhhhhhc-cCC
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIYQ------HVIATDTSPKQLKFAIK----L--PNIRYQLTP--TMSITELEQN-VAT 96 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~------~v~~vD~s~~~~~~a~~----~--~~~~~~~~~--~~~~~~~~~~-~~~ 96 (262)
.++..|||..+-+|.=|.+|.+..+ .|++-|.++.-+..... . +++.+...+ .++.....++ +..
T Consensus 154 ~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~~~~~~ 233 (375)
T KOG2198|consen 154 KPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKDGNDKE 233 (375)
T ss_pred CCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccccCchhh
Confidence 5889999999999999998887533 79999999887766543 2 333333333 1111100011 124
Q ss_pred CCceeeEEEcccc-------------c--cC-C--------hhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961 97 QSSVDLVTIASAL-------------H--WF-D--------LPQFYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 97 ~~~~D~V~~~~~~-------------~--~~-d--------~~~~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
...||-|++.-.+ . |. . .-..+....++|| +||+++-.+++-
T Consensus 234 ~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk-~GG~lVYSTCSL 299 (375)
T KOG2198|consen 234 QLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLK-VGGRLVYSTCSL 299 (375)
T ss_pred hhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhc-CCCEEEEeccCC
Confidence 4568999873221 1 22 1 1226778899999 999999877763
No 296
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=94.62 E-value=0.13 Score=45.29 Aligned_cols=79 Identities=20% Similarity=0.194 Sum_probs=42.5
Q ss_pred CCCCCeEEEEcCcccHhHHHHHhh------------C------CeEEEEcCCHHHHHHHhc-C---------CCceEEeC
Q 037961 31 TPKRNLAWDVGTRSGQAAASLAQI------------Y------QHVIATDTSPKQLKFAIK-L---------PNIRYQLT 82 (262)
Q Consensus 31 ~~~~~~vlDvGcG~G~~~~~l~~~------------~------~~v~~vD~s~~~~~~a~~-~---------~~~~~~~~ 82 (262)
.+..-+|+|+||.+|..|..+... . .+|+-.|+-..--...-+ . ..--|..+
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 356678999999999998876531 1 267777776544333221 1 11222221
Q ss_pred CCCchhhhhhccCCCCceeeEEEccccccC
Q 037961 83 PTMSITELEQNVATQSSVDLVTIASALHWF 112 (262)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~ 112 (262)
- -+.+..--+|+++.|+++++.++||+
T Consensus 94 v---pgSFy~rLfP~~Svh~~~Ss~alHWL 120 (334)
T PF03492_consen 94 V---PGSFYGRLFPSNSVHFGHSSYALHWL 120 (334)
T ss_dssp E---ES-TTS--S-TT-EEEEEEES-TTB-
T ss_pred c---CchhhhccCCCCceEEEEEechhhhc
Confidence 1 03355555799999999999999999
No 297
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=94.61 E-value=0.52 Score=41.31 Aligned_cols=99 Identities=18% Similarity=0.150 Sum_probs=61.7
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCcee-eEEEcc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVD-LVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D-~V~~~~ 107 (262)
.++.+||=.|||+ |..+.++++. |.+ |++++.+++-++.+++..--.++..+......+... .....+| +|+-.-
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~-~~~~~~d~~v~d~~ 237 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSV-LRELRFDQLILETA 237 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHH-hcCCCCCeEEEECC
Confidence 4677888888875 6677777764 776 789999999888887643222222221111112222 1234577 555321
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
--...+.++.++|+ +||+++++..
T Consensus 238 -----G~~~~~~~~~~~l~-~~G~iv~~G~ 261 (347)
T PRK10309 238 -----GVPQTVELAIEIAG-PRAQLALVGT 261 (347)
T ss_pred -----CCHHHHHHHHHHhh-cCCEEEEEcc
Confidence 22457889999999 9999998664
No 298
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.56 E-value=0.11 Score=44.38 Aligned_cols=68 Identities=15% Similarity=0.013 Sum_probs=48.9
Q ss_pred eEEEEcCcccHhHHHHHhhCCe-EEEEcCCHHHHHHHhcC-CCceEEeCCCCchhhhhhccCC--CCceeeEEEccccc
Q 037961 36 LAWDVGTRSGQAAASLAQIYQH-VIATDTSPKQLKFAIKL-PNIRYQLTPTMSITELEQNVAT--QSSVDLVTIASALH 110 (262)
Q Consensus 36 ~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~D~V~~~~~~~ 110 (262)
+++|+-||.|..+..+.+.|.+ +.++|+++..++..+.+ +.. ...+| +.++... .+.+|+|+....+.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-~~~~D------i~~~~~~~~~~~~D~l~~gpPCq 73 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-LIEGD------ITKIDEKDFIPDIDLLTGGFPCQ 73 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-CccCc------cccCchhhcCCCCCEEEeCCCCh
Confidence 5899999999999999888765 66899999999987764 333 34444 2222211 35699999876664
No 299
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=94.46 E-value=0.025 Score=47.87 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=59.5
Q ss_pred CCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhcCCCceE--E----eCC-----CCchhhhhhcc-CCCC-
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIKLPNIRY--Q----LTP-----TMSITELEQNV-ATQS- 98 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~----~~~-----~~~~~~~~~~~-~~~~- 98 (262)
.+.+|||+|||+|.........+ ..+...|.+...++.-. .+++.. . ..+ ........++. ...+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t-~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVT-LPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred cCceeEecCCcccccchhhhhhccceeeeEecchhheeeec-ccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 67889999999999988887777 68889999888774322 111111 0 000 00001000111 0122
Q ss_pred -ceeeEEEccccccCChhHHH--HHHHHhhcCCCeEEEE
Q 037961 99 -SVDLVTIASALHWFDLPQFY--KQVKWVLKKPSGVIAA 134 (262)
Q Consensus 99 -~~D~V~~~~~~~~~d~~~~l--~~~~r~Lk~pgG~l~i 134 (262)
.||+|.++..+.-.+..+.+ .....+++ ++|.+.+
T Consensus 195 ~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~-~D~~~~~ 232 (282)
T KOG2920|consen 195 THYDLILSSETIYSIDSLAVLYLLHRPCLLK-TDGVFYV 232 (282)
T ss_pred cchhhhhhhhhhhCcchhhhhHhhhhhhcCC-ccchhhh
Confidence 78999988888877555533 34445556 7887765
No 300
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.32 E-value=0.54 Score=38.03 Aligned_cols=116 Identities=21% Similarity=0.241 Sum_probs=75.4
Q ss_pred HHHhhCCCChHHHHHHHHhhC-----CCCCeEEEEcCcccHhHHHHHhh-C-CeEEEEcCCHHHHH----HHhcCCCceE
Q 037961 11 LYAVARPNYPKELFKLIASKT-----PKRNLAWDVGTRSGQAAASLAQI-Y-QHVIATDTSPKQLK----FAIKLPNIRY 79 (262)
Q Consensus 11 ~Y~~~rp~yp~~~~~~l~~~~-----~~~~~vlDvGcG~G~~~~~l~~~-~-~~v~~vD~s~~~~~----~a~~~~~~~~ 79 (262)
.|..+.|.= .++...|++-+ +++..||=+|+.+|....+++.- + ..+.||+.|+.+.. .|++++|+--
T Consensus 50 eYR~Wnp~R-SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~P 128 (231)
T COG1889 50 EYREWNPRR-SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIP 128 (231)
T ss_pred ceeeeCcch-hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCcee
Confidence 355555533 55555555433 48899999999999999999875 3 46999999997765 4556777766
Q ss_pred EeCC-CCchhhhhhccCCCCceeeEEEccccccCCh-hHHHHHHHHhhcCCCeEEEE
Q 037961 80 QLTP-TMSITELEQNVATQSSVDLVTIASALHWFDL-PQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 80 ~~~~-~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~-~~~l~~~~r~Lk~pgG~l~i 134 (262)
+.+| ..+ +....-=+.+|+|+..-+=. +. +-+..++..-|| +||.+.+
T Consensus 129 IL~DA~~P----~~Y~~~Ve~VDviy~DVAQp--~Qa~I~~~Na~~FLk-~~G~~~i 178 (231)
T COG1889 129 ILEDARKP----EKYRHLVEKVDVIYQDVAQP--NQAEILADNAEFFLK-KGGYVVI 178 (231)
T ss_pred eecccCCc----HHhhhhcccccEEEEecCCc--hHHHHHHHHHHHhcc-cCCeEEE
Confidence 6665 222 11111124589998643310 21 227778888999 8886554
No 301
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.23 E-value=0.053 Score=44.07 Aligned_cols=59 Identities=24% Similarity=0.262 Sum_probs=37.3
Q ss_pred hCCCChHHH----HHHHHhhCC--CCCeEEEEcCcccHhHHHHHh----hCCeEEEEcCCHHHHHHHhc
Q 037961 15 ARPNYPKEL----FKLIASKTP--KRNLAWDVGTRSGQAAASLAQ----IYQHVIATDTSPKQLKFAIK 73 (262)
Q Consensus 15 ~rp~yp~~~----~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~ 73 (262)
.-|.+|-.+ ++....+.. .+-++.|-.||.|.+.-.+.- ....|+|.|+++++++.|++
T Consensus 27 G~p~FPVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~k 95 (246)
T PF11599_consen 27 GFPAFPVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARK 95 (246)
T ss_dssp TB----HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHH
Confidence 346676544 444444443 446789999999987765532 35689999999999999986
No 302
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=94.17 E-value=0.67 Score=40.40 Aligned_cols=99 Identities=21% Similarity=0.243 Sum_probs=61.8
Q ss_pred CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961 31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~ 106 (262)
.+++.+||-.|+|. |..+..+++. +. .+++++.++...+.+++.....++....... ..+... ...+.+|+|+-.
T Consensus 165 ~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~i~~~-~~~~~~d~vld~ 243 (347)
T cd05278 165 IKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNGDIVEQILEL-TGGRGVDCVIEA 243 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcCCcchHHHHHHHH-cCCCCCcEEEEc
Confidence 34667788878763 7777777765 64 7899988888877777553222222221111 112222 134579999854
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
.. ....+.++.+.|+ ++|+++.+.
T Consensus 244 ~g-----~~~~~~~~~~~l~-~~G~~v~~g 267 (347)
T cd05278 244 VG-----FEETFEQAVKVVR-PGGTIANVG 267 (347)
T ss_pred cC-----CHHHHHHHHHHhh-cCCEEEEEc
Confidence 22 1257888999999 999988754
No 303
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.17 E-value=0.43 Score=43.21 Aligned_cols=100 Identities=15% Similarity=0.034 Sum_probs=65.4
Q ss_pred HHHHHHHhhC---CCCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCC
Q 037961 22 ELFKLIASKT---PKRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVAT 96 (262)
Q Consensus 22 ~~~~~l~~~~---~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (262)
...+-+.... -++.+|+=+|||+ |......++ .|++|+++|+++.-++.|+.. ++..... .++ .
T Consensus 187 s~~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~-G~~~~~~-----~e~--v--- 255 (413)
T cd00401 187 SLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAME-GYEVMTM-----EEA--V--- 255 (413)
T ss_pred hhHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhc-CCEEccH-----HHH--H---
Confidence 3344444443 3688999999997 666655554 588999999999888888764 3322211 111 1
Q ss_pred CCceeeEEEccccccCChhHHHHH-HHHhhcCCCeEEEEEecCC
Q 037961 97 QSSVDLVTIASALHWFDLPQFYKQ-VKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 97 ~~~~D~V~~~~~~~~~d~~~~l~~-~~r~Lk~pgG~l~i~~~~~ 139 (262)
..+|+|+.... ...++.. ..+.+| +||+++.....+
T Consensus 256 -~~aDVVI~atG-----~~~~i~~~~l~~mk-~GgilvnvG~~~ 292 (413)
T cd00401 256 -KEGDIFVTTTG-----NKDIITGEHFEQMK-DGAIVCNIGHFD 292 (413)
T ss_pred -cCCCEEEECCC-----CHHHHHHHHHhcCC-CCcEEEEeCCCC
Confidence 24799986533 2345554 489999 999998866543
No 304
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.16 E-value=0.65 Score=38.80 Aligned_cols=96 Identities=14% Similarity=0.193 Sum_probs=65.1
Q ss_pred CCCeEEEEcCcccHhHHHHHhh------CCeEEEEcCCHHHHHHH-h----cCCCceE--EeCC-CCchhhhhhccCCCC
Q 037961 33 KRNLAWDVGTRSGQAAASLAQI------YQHVIATDTSPKQLKFA-I----KLPNIRY--QLTP-TMSITELEQNVATQS 98 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~------~~~v~~vD~s~~~~~~a-~----~~~~~~~--~~~~-~~~~~~~~~~~~~~~ 98 (262)
.....+|+|+|+..=|+.|... ..+++.+|+|...++.. + +++.+++ +.++ +..+ ..+ +.+
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~L---a~~--~~~ 152 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELAL---AEL--PRG 152 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHH---hcc--cCC
Confidence 4677899999999988887653 24799999999998743 3 3465554 3343 2221 112 233
Q ss_pred cee-eEEEccccccCChh---HHHHHHHHhhcCCCeEEEE
Q 037961 99 SVD-LVTIASALHWFDLP---QFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 99 ~~D-~V~~~~~~~~~d~~---~~l~~~~r~Lk~pgG~l~i 134 (262)
+-- +++...++.-+.|. .++..+..+|+ ||-++.+
T Consensus 153 ~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~-pGd~~Ll 191 (321)
T COG4301 153 GRRLFVFLGSTLGNLTPGECAVFLTQLRGALR-PGDYFLL 191 (321)
T ss_pred CeEEEEEecccccCCChHHHHHHHHHHHhcCC-CcceEEE
Confidence 333 34466777777444 48999999999 9999988
No 305
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=94.16 E-value=1.1 Score=38.97 Aligned_cols=100 Identities=19% Similarity=0.157 Sum_probs=63.6
Q ss_pred CCCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961 31 TPKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~ 107 (262)
..++..||-.|+|. |..+..+++. |.+ +++++.++...+.+++.....++.........+.... ....+|+|+..
T Consensus 157 ~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~-~~~~~d~vld~- 234 (343)
T cd08236 157 ITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKEEDVEKVRELT-EGRGADLVIEA- 234 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCccccHHHHHHHh-CCCCCCEEEEC-
Confidence 34667788888765 6677777764 776 9999999988887765422222222211112222221 33459999854
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
......+..+.+.|+ ++|+++.+..
T Consensus 235 ----~g~~~~~~~~~~~l~-~~G~~v~~g~ 259 (343)
T cd08236 235 ----AGSPATIEQALALAR-PGGKVVLVGI 259 (343)
T ss_pred ----CCCHHHHHHHHHHhh-cCCEEEEEcc
Confidence 223457889999999 9999887653
No 306
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=94.10 E-value=0.048 Score=39.28 Aligned_cols=32 Identities=19% Similarity=-0.017 Sum_probs=27.5
Q ss_pred CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCC
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIYQHVIATDTS 64 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s 64 (262)
+....+|+|||+|.+.--|.+.|..=.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCCCccccccc
Confidence 45668999999999999999889888888873
No 307
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.10 E-value=0.24 Score=45.97 Aligned_cols=99 Identities=19% Similarity=0.139 Sum_probs=65.6
Q ss_pred CCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCC-C------------Cchhhhh-----h
Q 037961 33 KRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTP-T------------MSITELE-----Q 92 (262)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~------------~~~~~~~-----~ 92 (262)
++.+|+=+|||. |..+..++. .|+.|+++|.++.-++.++.. ...++.-+ . .+ .+.. .
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~l-Ga~~v~v~~~e~g~~~~gYa~~~s-~~~~~~~~~~ 240 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSM-GAEFLELDFKEEGGSGDGYAKVMS-EEFIAAEMEL 240 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCeEEeccccccccccccceeecC-HHHHHHHHHH
Confidence 467899999997 677776666 488999999999999888875 23332211 0 00 0000 0
Q ss_pred ccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961 93 NVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 93 ~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
++-.-..+|+|+..-.+..- .|.-..+++.+.+| ||++++=
T Consensus 241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MK-pGsvIVD 282 (511)
T TIGR00561 241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMK-AGSVIVD 282 (511)
T ss_pred HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCC-CCCEEEE
Confidence 11113469999876655554 44447888999999 9999873
No 308
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=93.98 E-value=0.83 Score=39.75 Aligned_cols=99 Identities=17% Similarity=0.168 Sum_probs=64.0
Q ss_pred CCCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961 31 TPKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~ 107 (262)
..++..||-.|+|. |..+..+++. |.+++++..+++..+.+++...-.++....... ..+... .+...+|+|+...
T Consensus 157 l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~-~~~~~vd~vld~~ 235 (337)
T cd08261 157 VTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGADDTINVGDEDVAARLREL-TDGEGADVVIDAT 235 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCCCEEecCcccCHHHHHHHH-hCCCCCCEEEECC
Confidence 35677888888774 7777777775 889999999999888776543222222211111 112222 2345689998542
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
. -...+.++.+.|+ ++|+++.+.
T Consensus 236 g-----~~~~~~~~~~~l~-~~G~~i~~g 258 (337)
T cd08261 236 G-----NPASMEEAVELVA-HGGRVVLVG 258 (337)
T ss_pred C-----CHHHHHHHHHHHh-cCCEEEEEc
Confidence 1 2456889999999 999988754
No 309
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=93.93 E-value=0.46 Score=42.13 Aligned_cols=95 Identities=13% Similarity=0.089 Sum_probs=58.2
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHH-HHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLK-FAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~ 108 (262)
.++.+||=.|+|. |.++.++++. |.++++++.++.... .+++. +........ ....+... .+.+|+|+-...
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~-Ga~~vi~~~-~~~~~~~~---~~~~D~vid~~g 256 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRL-GADSFLVST-DPEKMKAA---IGTMDYIIDTVS 256 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhC-CCcEEEcCC-CHHHHHhh---cCCCCEEEECCC
Confidence 4667777799875 7777777764 888998888766543 33443 232222110 00112222 124898884332
Q ss_pred cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
....++++.+.|+ +||+++.+..
T Consensus 257 -----~~~~~~~~~~~l~-~~G~iv~vG~ 279 (360)
T PLN02586 257 -----AVHALGPLLGLLK-VNGKLITLGL 279 (360)
T ss_pred -----CHHHHHHHHHHhc-CCcEEEEeCC
Confidence 2346788999999 9999997653
No 310
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=93.74 E-value=1.2 Score=39.36 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=64.1
Q ss_pred CCCCCeEEEEcC-c-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHh-cCCCceEEeCC-CCch-hhhhhccCCCCceeeEE
Q 037961 31 TPKRNLAWDVGT-R-SGQAAASLAQI-YQHVIATDTSPKQLKFAI-KLPNIRYQLTP-TMSI-TELEQNVATQSSVDLVT 104 (262)
Q Consensus 31 ~~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~D~V~ 104 (262)
..++.+||=.|+ | .|.++.++++. |.+|++++.++.-++.++ +..--.++... .-.. ..+... ..+.+|+|+
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~--~~~gvD~v~ 233 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRY--FPEGIDIYF 233 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHH--CCCCcEEEE
Confidence 357788888888 3 58888888775 889999999998888776 34221222211 1011 112222 124689998
Q ss_pred EccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
-... ...+..+.+.|+ +||+++++..
T Consensus 234 d~vG------~~~~~~~~~~l~-~~G~iv~~G~ 259 (348)
T PLN03154 234 DNVG------GDMLDAALLNMK-IHGRIAVCGM 259 (348)
T ss_pred ECCC------HHHHHHHHHHhc-cCCEEEEECc
Confidence 5433 247788999999 9999998654
No 311
>PLN02740 Alcohol dehydrogenase-like
Probab=93.67 E-value=0.95 Score=40.41 Aligned_cols=99 Identities=12% Similarity=0.109 Sum_probs=63.8
Q ss_pred CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCC--ch-hhhhhccCCCCceeeEE
Q 037961 31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTM--SI-TELEQNVATQSSVDLVT 104 (262)
Q Consensus 31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~D~V~ 104 (262)
.+++.+||=.|||+ |..+.++++. |. +|+++|.+++-++.+++..--.++..... .. ..+..+ ..+.+|+|+
T Consensus 196 ~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~--~~~g~dvvi 273 (381)
T PLN02740 196 VQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREM--TGGGVDYSF 273 (381)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHH--hCCCCCEEE
Confidence 35778889999875 6777777764 76 69999999999999987532222221110 01 112222 223699998
Q ss_pred EccccccCChhHHHHHHHHhhcCCC-eEEEEEec
Q 037961 105 IASALHWFDLPQFYKQVKWVLKKPS-GVIAAWTY 137 (262)
Q Consensus 105 ~~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~~ 137 (262)
-... ....+..+.+.++ +| |++++...
T Consensus 274 d~~G-----~~~~~~~a~~~~~-~g~G~~v~~G~ 301 (381)
T PLN02740 274 ECAG-----NVEVLREAFLSTH-DGWGLTVLLGI 301 (381)
T ss_pred ECCC-----ChHHHHHHHHhhh-cCCCEEEEEcc
Confidence 5433 2357788888998 86 99887554
No 312
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=93.61 E-value=0.094 Score=47.07 Aligned_cols=49 Identities=18% Similarity=0.171 Sum_probs=40.4
Q ss_pred CeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcC-------CCceEEeCC
Q 037961 35 NLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKL-------PNIRYQLTP 83 (262)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-------~~~~~~~~~ 83 (262)
..|||+|.|||.++...++.|+ .|++++.=..|.+.|++. .+|+++...
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkr 124 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKR 124 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccc
Confidence 4689999999999999888865 699999999999999862 466666543
No 313
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=93.55 E-value=0.062 Score=45.83 Aligned_cols=103 Identities=13% Similarity=0.106 Sum_probs=64.4
Q ss_pred HHhhCCCCCeEEEEcCcccHhHH-HHHhhCC-eEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceeeE
Q 037961 27 IASKTPKRNLAWDVGTRSGQAAA-SLAQIYQ-HVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLV 103 (262)
Q Consensus 27 l~~~~~~~~~vlDvGcG~G~~~~-~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~V 103 (262)
+.+....+..|+|+=+|-|.+|. .+...++ .|+++|.+|..++..++...++.+... ....+| ...+-++...|.|
T Consensus 188 v~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd-~R~~~~~~~AdrV 266 (351)
T KOG1227|consen 188 VLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGD-NRNPKPRLRADRV 266 (351)
T ss_pred hhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcc-ccccCccccchhe
Confidence 33334466889999999999999 6666665 689999999999998864333222111 111111 2233356777877
Q ss_pred EEccccccC-ChhHHHHHHHHhhcCCCe-EEEE
Q 037961 104 TIASALHWF-DLPQFYKQVKWVLKKPSG-VIAA 134 (262)
Q Consensus 104 ~~~~~~~~~-d~~~~l~~~~r~Lk~pgG-~l~i 134 (262)
.-.. + .-++-+--+-++||+.|| ++-|
T Consensus 267 nLGL----lPSse~~W~~A~k~Lk~eggsilHI 295 (351)
T KOG1227|consen 267 NLGL----LPSSEQGWPTAIKALKPEGGSILHI 295 (351)
T ss_pred eecc----ccccccchHHHHHHhhhcCCcEEEE
Confidence 6432 2 334555667788884566 4444
No 314
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=93.52 E-value=1.3 Score=38.38 Aligned_cols=98 Identities=17% Similarity=0.086 Sum_probs=63.2
Q ss_pred CCCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCC-Cchhh-hhhccCCCCceeeEEE
Q 037961 31 TPKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPT-MSITE-LEQNVATQSSVDLVTI 105 (262)
Q Consensus 31 ~~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~D~V~~ 105 (262)
..++.+||=.|+ |.|..+.++++. |.+|++++.+++..+.+++..--.++..+. -...+ .... ..+.+|+|+-
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~--~~~gvdvv~d 213 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKA--SPDGYDCYFD 213 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHh--CCCCeEEEEE
Confidence 357788888884 357888888775 889999999999888887653222222211 01111 1112 2346999985
Q ss_pred ccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
... ...+..+.+.|+ +||+++.+..
T Consensus 214 ~~G------~~~~~~~~~~l~-~~G~iv~~G~ 238 (325)
T TIGR02825 214 NVG------GEFSNTVIGQMK-KFGRIAICGA 238 (325)
T ss_pred CCC------HHHHHHHHHHhC-cCcEEEEecc
Confidence 322 235688899999 9999998653
No 315
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=93.46 E-value=0.45 Score=35.41 Aligned_cols=101 Identities=18% Similarity=0.149 Sum_probs=51.1
Q ss_pred HHHHHHHhhCCCCCeEEEEcCcc-cHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCce
Q 037961 22 ELFKLIASKTPKRNLAWDVGTRS-GQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSV 100 (262)
Q Consensus 22 ~~~~~l~~~~~~~~~vlDvGcG~-G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (262)
++.+.+...... .+++|||-|. -..+..|.++|.+|+++|+.+. .+. .++.+...|.++ .+.+- -...
T Consensus 3 ~~a~~ia~~~~~-~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~--~g~~~v~DDif~-P~l~i----Y~~a 71 (127)
T PF03686_consen 3 DFAEYIARLNNY-GKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP--EGVNFVVDDIFN-PNLEI----YEGA 71 (127)
T ss_dssp HHHHHHHHHS-S-SEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S---------STTEE---SSS---HHH----HTTE
T ss_pred hHHHHHHHhCCC-CcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc--cCcceeeecccC-CCHHH----hcCC
Confidence 345556654444 4899999997 4567778888999999999988 222 578888776221 11110 2357
Q ss_pred eeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 101 DLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 101 D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
|+|.|...= .+....+-++++-+ |.-+++...+
T Consensus 72 ~lIYSiRPP--~El~~~il~lA~~v---~adlii~pL~ 104 (127)
T PF03686_consen 72 DLIYSIRPP--PELQPPILELAKKV---GADLIIRPLG 104 (127)
T ss_dssp EEEEEES----TTSHHHHHHHHHHH---T-EEEEE-BT
T ss_pred cEEEEeCCC--hHHhHHHHHHHHHh---CCCEEEECCC
Confidence 899875331 13333444444443 4566664444
No 316
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=93.45 E-value=1.3 Score=39.87 Aligned_cols=103 Identities=19% Similarity=0.148 Sum_probs=63.8
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCC-CCch-hhhhhccCCCCceeeEEEc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTP-TMSI-TELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~D~V~~~ 106 (262)
.++.+||=.|+|+ |..+..+++. |.+ ++++|.++.-++.+++.. +..+... .-.. ..+..+. ....+|+|+-.
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~G-a~~v~~~~~~~~~~~v~~~~-~~~g~Dvvid~ 261 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFG-CETVDLSKDATLPEQIEQIL-GEPEVDCAVDC 261 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcC-CeEEecCCcccHHHHHHHHc-CCCCCcEEEEC
Confidence 4566666688875 6777777764 665 667799988888888763 3332221 1011 1122221 23468999854
Q ss_pred ccccc-------C--ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 107 SALHW-------F--DLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 107 ~~~~~-------~--d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
..... . +....++++.++++ +||++++...
T Consensus 262 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~i~~~G~ 300 (393)
T TIGR02819 262 VGFEARGHGHDGKKEAPATVLNSLMEVTR-VGGAIGIPGL 300 (393)
T ss_pred CCCccccccccccccchHHHHHHHHHHhh-CCCEEEEeee
Confidence 44321 1 23358999999999 9999998665
No 317
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=93.42 E-value=0.63 Score=39.98 Aligned_cols=90 Identities=14% Similarity=0.189 Sum_probs=61.8
Q ss_pred CCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHHHHHhhC---CeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCch
Q 037961 16 RPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAASLAQIY---QHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSI 87 (262)
Q Consensus 16 rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~ 87 (262)
-|....+.++.|.. .++...+|.--|.|..+..+.+.+ .+++|+|.++.+++.|++. .++.++.+. +
T Consensus 8 ipVLl~E~i~~L~~--~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~---F 82 (314)
T COG0275 8 IPVLLNEVVELLAP--KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGN---F 82 (314)
T ss_pred cchHHHHHHHhccc--CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCc---H
Confidence 34444555554432 366888999999999999999874 5799999999999999863 477777765 1
Q ss_pred hhhhhc--cCCCCceeeEEEccccc
Q 037961 88 TELEQN--VATQSSVDLVTIASALH 110 (262)
Q Consensus 88 ~~~~~~--~~~~~~~D~V~~~~~~~ 110 (262)
.++... ...-+++|-|+...++-
T Consensus 83 ~~l~~~l~~~~i~~vDGiL~DLGVS 107 (314)
T COG0275 83 ANLAEALKELGIGKVDGILLDLGVS 107 (314)
T ss_pred HHHHHHHHhcCCCceeEEEEeccCC
Confidence 122111 12346788888754443
No 318
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=93.36 E-value=1.3 Score=38.36 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=62.8
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~ 108 (262)
.++.+||-.|+|. |..+..+++. |.+ +++++.+++..+.+++..--..+..+....... . ......+|+|+....
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~-~~~~~~vd~v~~~~~ 235 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQ-K-EDNPYGFDVVIEATG 235 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHH-H-HhcCCCCcEEEECCC
Confidence 4677888888763 6666666664 666 899999999988876542212222221111111 1 123456999985422
Q ss_pred cccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
....+.++.+.|+ ++|+++.+...
T Consensus 236 -----~~~~~~~~~~~l~-~~G~~v~~g~~ 259 (334)
T cd08234 236 -----VPKTLEQAIEYAR-RGGTVLVFGVY 259 (334)
T ss_pred -----ChHHHHHHHHHHh-cCCEEEEEecC
Confidence 2467888999999 99999876543
No 319
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=93.09 E-value=1.5 Score=38.40 Aligned_cols=98 Identities=20% Similarity=0.207 Sum_probs=62.1
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~ 107 (262)
+++.+||=.|+|. |..+..+++. |. .++++|.++...+.+++..--.++....... ..+..+. ....+|+|+-..
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~-~~~~~d~vld~~ 243 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLT-GGKGVDAVIIAG 243 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHh-CCCCCcEEEECC
Confidence 5677888888773 6666777764 66 5999999998888887653222222211111 1122221 334699998532
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
. ....+.++.+.|+ ++|+++.+.
T Consensus 244 g-----~~~~~~~~~~~l~-~~G~~v~~g 266 (351)
T cd08285 244 G-----GQDTFEQALKVLK-PGGTISNVN 266 (351)
T ss_pred C-----CHHHHHHHHHHhh-cCCEEEEec
Confidence 2 2357889999999 999998754
No 320
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.01 E-value=1.3 Score=38.94 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=61.7
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhh----hhccCCCCcee----
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITEL----EQNVATQSSVD---- 101 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~D---- 101 (262)
.++.+||=.|||+ |..+..+++. |.+|+++|.+++.++.+++..--.++........++ ..+. ....+|
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t-~~~g~d~~~d 243 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFA-KARGLRSTGW 243 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhc-ccCCCCCCcC
Confidence 5678899999976 7777777764 789999999999999887653211221111100111 1111 112344
Q ss_pred eEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 102 LVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 102 ~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
+|+-.. .....++.+.++|+ +||+++++...
T Consensus 244 ~v~d~~-----g~~~~~~~~~~~l~-~~G~iv~~G~~ 274 (349)
T TIGR03201 244 KIFECS-----GSKPGQESALSLLS-HGGTLVVVGYT 274 (349)
T ss_pred EEEECC-----CChHHHHHHHHHHh-cCCeEEEECcC
Confidence 555211 22457788899999 99999986643
No 321
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=92.86 E-value=0.16 Score=47.38 Aligned_cols=98 Identities=18% Similarity=0.172 Sum_probs=60.8
Q ss_pred hCCCCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcCCCceEEeCC-C-Cch-hhhhhccCCCCceeeE
Q 037961 30 KTPKRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKLPNIRYQLTP-T-MSI-TELEQNVATQSSVDLV 103 (262)
Q Consensus 30 ~~~~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~D~V 103 (262)
.+.+...|||+||.+|.+.+..++. +.-|+|+|+-|- +-.+++...+.+ + -.+ ..+... +...+.|+|
T Consensus 41 fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi-----kp~~~c~t~v~dIttd~cr~~l~k~-l~t~~advV 114 (780)
T KOG1098|consen 41 FLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI-----KPIPNCDTLVEDITTDECRSKLRKI-LKTWKADVV 114 (780)
T ss_pred cccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec-----ccCCccchhhhhhhHHHHHHHHHHH-HHhCCCcEE
Confidence 3468889999999999998877664 677999999764 334555555444 1 000 000000 233456998
Q ss_pred EEccc----cccC-Chh-------HHHHHHHHhhcCCCeEEEE
Q 037961 104 TIASA----LHWF-DLP-------QFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 104 ~~~~~----~~~~-d~~-------~~l~~~~r~Lk~pgG~l~i 134 (262)
+...+ ..|. |.- .++.-+...|. -||+|+-
T Consensus 115 LhDgapnVg~~w~~DA~~q~~L~l~al~LA~~~l~-~~g~fvt 156 (780)
T KOG1098|consen 115 LHDGAPNVGGNWVQDAFQQACLTLRALKLATEFLA-KGGTFVT 156 (780)
T ss_pred eecCCCccchhHHHHHHHhhHHHHHHHHHHHHHHH-hcCcccc
Confidence 86433 3466 421 25667777888 8999775
No 322
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=92.82 E-value=1.4 Score=38.35 Aligned_cols=93 Identities=13% Similarity=0.028 Sum_probs=59.8
Q ss_pred CeEEEEcC--cccHhHHHHHhh-CC-eEEEEcCCHHHHHHHhc-CCCceEEeCCCCch-hhhhhccCCCCceeeEEEccc
Q 037961 35 NLAWDVGT--RSGQAAASLAQI-YQ-HVIATDTSPKQLKFAIK-LPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 35 ~~vlDvGc--G~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~~ 108 (262)
.+||=.|+ |.|..+.++++. |. +|++++.+++..+.+++ ..--.++.....+. ..+..+ ....+|+|+-...
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~--~~~gvd~vid~~g 233 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLREL--CPEGVDVYFDNVG 233 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHH--CCCCceEEEECCC
Confidence 78888876 458888888775 77 79999999988887765 32112222221111 112222 2256999985432
Q ss_pred cccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 109 LHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
...+.++.+.|+ ++|+++.+.
T Consensus 234 ------~~~~~~~~~~l~-~~G~iv~~G 254 (345)
T cd08293 234 ------GEISDTVISQMN-ENSHIILCG 254 (345)
T ss_pred ------cHHHHHHHHHhc-cCCEEEEEe
Confidence 124578899999 999999765
No 323
>PLN02827 Alcohol dehydrogenase-like
Probab=92.56 E-value=1.5 Score=39.14 Aligned_cols=99 Identities=13% Similarity=0.080 Sum_probs=62.5
Q ss_pred CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCC--Cch-hhhhhccCCCCceeeEE
Q 037961 31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPT--MSI-TELEQNVATQSSVDLVT 104 (262)
Q Consensus 31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~D~V~ 104 (262)
..++.+||-.|+|+ |.++.++++. |. .|+++|.++...+.+++..--.++.... ... ..+..+ ..+.+|+|+
T Consensus 191 ~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~--~~~g~d~vi 268 (378)
T PLN02827 191 VSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRM--TGGGADYSF 268 (378)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHH--hCCCCCEEE
Confidence 35778889888875 6676667664 66 5889999999988887653212222111 000 111112 123689998
Q ss_pred EccccccCChhHHHHHHHHhhcCCC-eEEEEEec
Q 037961 105 IASALHWFDLPQFYKQVKWVLKKPS-GVIAAWTY 137 (262)
Q Consensus 105 ~~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~~ 137 (262)
-... ....+..+.++|+ +| |+++++..
T Consensus 269 d~~G-----~~~~~~~~l~~l~-~g~G~iv~~G~ 296 (378)
T PLN02827 269 ECVG-----DTGIATTALQSCS-DGWGLTVTLGV 296 (378)
T ss_pred ECCC-----ChHHHHHHHHhhc-cCCCEEEEECC
Confidence 5432 2346788999999 88 99987653
No 324
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=92.48 E-value=1.7 Score=38.65 Aligned_cols=99 Identities=15% Similarity=0.090 Sum_probs=63.0
Q ss_pred CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCC--Cch-hhhhhccCCCCceeeEE
Q 037961 31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPT--MSI-TELEQNVATQSSVDLVT 104 (262)
Q Consensus 31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~D~V~ 104 (262)
..++.+||=.|||. |..+.++++. |. +|+++|.++.-++.+++..--..+.... ... ..+..+ ..+.+|+|+
T Consensus 183 ~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~--~~~g~d~vi 260 (368)
T TIGR02818 183 VEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEI--TDGGVDYSF 260 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHH--hCCCCCEEE
Confidence 35678888889875 7777777764 76 7999999999999887653212221110 000 111122 123689888
Q ss_pred EccccccCChhHHHHHHHHhhcCCC-eEEEEEec
Q 037961 105 IASALHWFDLPQFYKQVKWVLKKPS-GVIAAWTY 137 (262)
Q Consensus 105 ~~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~~ 137 (262)
-... -...+.++.+.++ +| |++++...
T Consensus 261 d~~G-----~~~~~~~~~~~~~-~~~G~~v~~g~ 288 (368)
T TIGR02818 261 ECIG-----NVNVMRAALECCH-KGWGESIIIGV 288 (368)
T ss_pred ECCC-----CHHHHHHHHHHhh-cCCCeEEEEec
Confidence 4322 1457788899998 76 99987664
No 325
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=92.31 E-value=2.5 Score=36.48 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=63.0
Q ss_pred CCCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961 31 TPKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 31 ~~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~ 106 (262)
..++.+||=.|+ |.|..+.++++. |.+|++++.+++-.+.+++..--.++.....+. ..+..+ ..+.+|+|+-.
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~--~~~gvd~vld~ 218 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEA--APDGIDCYFDN 218 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHH--CCCCcEEEEEC
Confidence 356778887774 457777777774 889999999999888887753222222221111 112222 23569999853
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
.. ...++...+.|+ ++|+++.+.
T Consensus 219 ~g------~~~~~~~~~~l~-~~G~iv~~g 241 (329)
T cd08294 219 VG------GEFSSTVLSHMN-DFGRVAVCG 241 (329)
T ss_pred CC------HHHHHHHHHhhc-cCCEEEEEc
Confidence 32 256788999999 999998754
No 326
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=92.30 E-value=3.2 Score=36.39 Aligned_cols=101 Identities=17% Similarity=0.116 Sum_probs=64.5
Q ss_pred CCCCCeEEEEcCc--ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961 31 TPKRNLAWDVGTR--SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 31 ~~~~~~vlDvGcG--~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~ 106 (262)
.+++.+||=.|+. .|.++.+|++. |..++++--+++-.+.+++.-.-..+.-....+ +...++ .....+|+|+-.
T Consensus 140 l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~vi~y~~~~~~~~v~~~-t~g~gvDvv~D~ 218 (326)
T COG0604 140 LKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADHVINYREEDFVEQVREL-TGGKGVDVVLDT 218 (326)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCEEEcCCcccHHHHHHHH-cCCCCceEEEEC
Confidence 4568888888743 47888888886 558888888887777777763322222111001 112222 123469999954
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
-. ...+.+..+.|+ ++|+++.+....
T Consensus 219 vG------~~~~~~~l~~l~-~~G~lv~ig~~~ 244 (326)
T COG0604 219 VG------GDTFAASLAALA-PGGRLVSIGALS 244 (326)
T ss_pred CC------HHHHHHHHHHhc-cCCEEEEEecCC
Confidence 43 456777899999 999999866543
No 327
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=92.16 E-value=0.29 Score=43.29 Aligned_cols=41 Identities=22% Similarity=0.174 Sum_probs=34.2
Q ss_pred CCCeEEEEcCcccHhHHHHHh-hCCeEEEEcCCHHHHHHHhc
Q 037961 33 KRNLAWDVGTRSGQAAASLAQ-IYQHVIATDTSPKQLKFAIK 73 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~ 73 (262)
+-..++|+|.|.|.+++.++= ++..|.+||-|....+.|++
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 345689999999999999875 58899999999877777664
No 328
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=92.09 E-value=2.4 Score=36.91 Aligned_cols=98 Identities=15% Similarity=0.113 Sum_probs=63.5
Q ss_pred CCCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhc-CCCceEEeCC-CCch-hhhhhccCCCCceeeEE
Q 037961 31 TPKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIK-LPNIRYQLTP-TMSI-TELEQNVATQSSVDLVT 104 (262)
Q Consensus 31 ~~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~-~~~~-~~~~~~~~~~~~~D~V~ 104 (262)
..++.+||=.|+ |.|..+.++++. |.+|++++.+++..+.+++ ..--.++..+ .... ..+.... .+.+|+|+
T Consensus 149 ~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~--~~gvd~v~ 226 (338)
T cd08295 149 PKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYF--PNGIDIYF 226 (338)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhC--CCCcEEEE
Confidence 357788888886 357777777774 8899999999988888876 4211222211 1011 1122221 25699998
Q ss_pred EccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
-... ...+.++.+.|+ ++|+++.+..
T Consensus 227 d~~g------~~~~~~~~~~l~-~~G~iv~~G~ 252 (338)
T cd08295 227 DNVG------GKMLDAVLLNMN-LHGRIAACGM 252 (338)
T ss_pred ECCC------HHHHHHHHHHhc-cCcEEEEecc
Confidence 5432 256788999999 9999997653
No 329
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=92.07 E-value=2.3 Score=37.12 Aligned_cols=100 Identities=17% Similarity=0.213 Sum_probs=63.0
Q ss_pred CCCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCc----hhhhhhccCCCCceeeE
Q 037961 31 TPKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMS----ITELEQNVATQSSVDLV 103 (262)
Q Consensus 31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~D~V 103 (262)
..++.+||-.|+|. |..+..+++. |.+ |++++.++...+.+++...-.++..+... ...+... .....+|+|
T Consensus 160 ~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~~~-~~~~~~d~v 238 (343)
T cd05285 160 VRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRTEDTPESAEKIAEL-LGGKGPDVV 238 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEeccccccchhHHHHHHHH-hCCCCCCEE
Confidence 35667777778765 6777777765 777 99999998888877664222222222111 1112222 234569999
Q ss_pred EEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 104 TIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 104 ~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
+-... ....+.+..+.|+ ++|+++.+..
T Consensus 239 ld~~g-----~~~~~~~~~~~l~-~~G~~v~~g~ 266 (343)
T cd05285 239 IECTG-----AESCIQTAIYATR-PGGTVVLVGM 266 (343)
T ss_pred EECCC-----CHHHHHHHHHHhh-cCCEEEEEcc
Confidence 85432 1347888999999 9999987553
No 330
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=91.99 E-value=2.3 Score=37.67 Aligned_cols=99 Identities=15% Similarity=0.083 Sum_probs=63.2
Q ss_pred CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCC--ch-hhhhhccCCCCceeeEE
Q 037961 31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTM--SI-TELEQNVATQSSVDLVT 104 (262)
Q Consensus 31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~D~V~ 104 (262)
.+++.+||=.|+|. |.++.++++. |. +|+++|.+++-++.+++..--.++..... .. ..+..+ ..+.+|+|+
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~--~~~g~d~vi 261 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEM--TDGGVDYTF 261 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHH--hCCCCcEEE
Confidence 35678888888864 6677777764 77 69999999999998876532222221110 01 111122 223689998
Q ss_pred EccccccCChhHHHHHHHHhhcCCC-eEEEEEec
Q 037961 105 IASALHWFDLPQFYKQVKWVLKKPS-GVIAAWTY 137 (262)
Q Consensus 105 ~~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~~ 137 (262)
-... -...+.++.+.|+ ++ |+++++..
T Consensus 262 d~~g-----~~~~~~~a~~~l~-~~~G~~v~~g~ 289 (368)
T cd08300 262 ECIG-----NVKVMRAALEACH-KGWGTSVIIGV 289 (368)
T ss_pred ECCC-----ChHHHHHHHHhhc-cCCCeEEEEcc
Confidence 5322 2357888899999 87 99988654
No 331
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=91.76 E-value=1.4 Score=32.20 Aligned_cols=96 Identities=20% Similarity=0.159 Sum_probs=58.6
Q ss_pred HHHHhhCCCCCeEEEEcCccc-HhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961 25 KLIASKTPKRNLAWDVGTRSG-QAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLV 103 (262)
Q Consensus 25 ~~l~~~~~~~~~vlDvGcG~G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V 103 (262)
+.++....+ ..|+|+|.|-= ..+..|+++|.+++++|+++. .+. .++++...|.++ .. +. --...|+|
T Consensus 6 ~~iAre~~~-gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~--~g~~~v~DDitn-P~---~~-iY~~A~lI 74 (129)
T COG1255 6 EYIARENAR-GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP--EGLRFVVDDITN-PN---IS-IYEGADLI 74 (129)
T ss_pred HHHHHHhcC-CcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc--ccceEEEccCCC-cc---HH-HhhCccce
Confidence 344433333 37899998863 456778889999999999987 333 578888776111 00 00 02346777
Q ss_pred EEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 104 TIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 104 ~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
.|.- .+....+-+.++-++=|..+++-.
T Consensus 75 YSiR-----pppEl~~~ildva~aVga~l~I~p 102 (129)
T COG1255 75 YSIR-----PPPELQSAILDVAKAVGAPLYIKP 102 (129)
T ss_pred eecC-----CCHHHHHHHHHHHHhhCCCEEEEe
Confidence 7632 456666666666663344555533
No 332
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=91.74 E-value=2.1 Score=37.04 Aligned_cols=100 Identities=12% Similarity=0.037 Sum_probs=62.7
Q ss_pred CeEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCC---CCchhhhhhccCCCCceeeEEEcccc
Q 037961 35 NLAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTP---TMSITELEQNVATQSSVDLVTIASAL 109 (262)
Q Consensus 35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~D~V~~~~~~ 109 (262)
.+|+=+|||. |.++-.|++.|.+|+.++-+++.++..++..++...... .+.... ..+.+.+.+|+|+...=
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~--~~~~~~~~~D~viv~vK- 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPA--ETADAAEPIHRLLLACK- 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCC--CCcccccccCEEEEECC-
Confidence 4578899996 556777778899999999987777766543333332211 111000 01112357999875322
Q ss_pred ccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961 110 HWFDLPQFYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
-.+.+.+++.+...+. ++..++....+-
T Consensus 80 -~~~~~~al~~l~~~l~-~~t~vv~lQNGv 107 (305)
T PRK05708 80 -AYDAEPAVASLAHRLA-PGAELLLLQNGL 107 (305)
T ss_pred -HHhHHHHHHHHHhhCC-CCCEEEEEeCCC
Confidence 2356778899999999 888776655443
No 333
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=91.69 E-value=4.1 Score=35.20 Aligned_cols=95 Identities=15% Similarity=0.062 Sum_probs=61.4
Q ss_pred CCCCCeEEEEcCc-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961 31 TPKRNLAWDVGTR-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 31 ~~~~~~vlDvGcG-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~ 108 (262)
..++..||-.||| .|..+..+++. |.+|++++.++..++.+++...-.++...... .... ..+.+|+|+....
T Consensus 160 ~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~---~~~~~d~vi~~~~ 234 (330)
T cd08245 160 PRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAEL--DEQA---AAGGADVILVTVV 234 (330)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcc--hHHh---ccCCCCEEEECCC
Confidence 3566778888987 57777777665 88999999999998887654211222211100 0111 1246898885321
Q ss_pred cccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 109 LHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
....+.++.+.|+ ++|+++.+.
T Consensus 235 -----~~~~~~~~~~~l~-~~G~~i~~~ 256 (330)
T cd08245 235 -----SGAAAEAALGGLR-RGGRIVLVG 256 (330)
T ss_pred -----cHHHHHHHHHhcc-cCCEEEEEC
Confidence 1347788899999 999998754
No 334
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=91.37 E-value=3.1 Score=36.02 Aligned_cols=89 Identities=11% Similarity=0.105 Sum_probs=54.8
Q ss_pred cCc-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEccccccCChhHH
Q 037961 41 GTR-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIASALHWFDLPQF 117 (262)
Q Consensus 41 GcG-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~ 117 (262)
|+| .|..+.++++. |.++++++.++.-.+.+++...-.++....... ..+.... ....+|+|+-... ...
T Consensus 152 g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~-~~~~~d~vid~~g------~~~ 224 (324)
T cd08291 152 AASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELI-AKLNATIFFDAVG------GGL 224 (324)
T ss_pred CccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHh-CCCCCcEEEECCC------cHH
Confidence 555 37777777764 889999999999988888753222332221111 1122221 2346899985332 233
Q ss_pred HHHHHHhhcCCCeEEEEEec
Q 037961 118 YKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 118 l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.....+.|+ +||+++.+..
T Consensus 225 ~~~~~~~l~-~~G~~v~~g~ 243 (324)
T cd08291 225 TGQILLAMP-YGSTLYVYGY 243 (324)
T ss_pred HHHHHHhhC-CCCEEEEEEe
Confidence 456788899 9999988654
No 335
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=91.21 E-value=2 Score=38.29 Aligned_cols=95 Identities=16% Similarity=0.123 Sum_probs=58.8
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHH-HHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQ-LKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~ 108 (262)
.++.+||=.|+|. |..+.++++. |++|++++.+++. .+.+++. +........ ....+.... +.+|+|+-...
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~l-Ga~~~i~~~-~~~~v~~~~---~~~D~vid~~G 251 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRL-GADSFLVTT-DSQKMKEAV---GTMDFIIDTVS 251 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhC-CCcEEEcCc-CHHHHHHhh---CCCcEEEECCC
Confidence 3577888888875 7777777764 8899999987654 5556554 222221110 001122211 24898885322
Q ss_pred cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
....+.++.+.|+ +||+++.+..
T Consensus 252 -----~~~~~~~~~~~l~-~~G~iv~vG~ 274 (375)
T PLN02178 252 -----AEHALLPLFSLLK-VSGKLVALGL 274 (375)
T ss_pred -----cHHHHHHHHHhhc-CCCEEEEEcc
Confidence 2347788899999 9999998654
No 336
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=91.11 E-value=3.5 Score=36.75 Aligned_cols=100 Identities=20% Similarity=0.163 Sum_probs=61.5
Q ss_pred CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCC-CC---c-hhhhhhccCCCCceee
Q 037961 31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTP-TM---S-ITELEQNVATQSSVDL 102 (262)
Q Consensus 31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~---~-~~~~~~~~~~~~~~D~ 102 (262)
..++.+||=.|+|. |..+..+++. |. +|++++.++.-.+.+++.. +...... .. . ...+..+. ....+|+
T Consensus 201 ~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~v~~~~-~g~gvDv 278 (384)
T cd08265 201 FRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMG-ADYVFNPTKMRDCLSGEKVMEVT-KGWGADI 278 (384)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-CCEEEcccccccccHHHHHHHhc-CCCCCCE
Confidence 35667777778764 5555666654 77 7999999988777776642 2222111 10 0 01122222 3446999
Q ss_pred EEEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 103 VTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 103 V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
|+.... +....+.++.+.|+ ++|+++.+..
T Consensus 279 vld~~g----~~~~~~~~~~~~l~-~~G~~v~~g~ 308 (384)
T cd08265 279 QVEAAG----APPATIPQMEKSIA-INGKIVYIGR 308 (384)
T ss_pred EEECCC----CcHHHHHHHHHHHH-cCCEEEEECC
Confidence 985422 33567889999999 9999997653
No 337
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=90.98 E-value=2.6 Score=37.19 Aligned_cols=99 Identities=19% Similarity=0.164 Sum_probs=59.5
Q ss_pred CCCCeEEEEcCc-ccHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVGTR-SGQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvGcG-~G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~ 107 (262)
.++.+||=.|+| .|..+..+++. +.+ +++++.++...+.+++..-..++..+.... ..+... .....+|+|+...
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~-~~~~~~d~vld~v 264 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNAAKEDAVAAIREI-TGGRGVDVVVEAL 264 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceEecCCcccHHHHHHHH-hCCCCCCEEEEeC
Confidence 355666666765 36666666654 666 999999998888776542212222211011 111112 1345699998542
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
. ....++++.+.|+ ++|+++.+..
T Consensus 265 g-----~~~~~~~~~~~l~-~~G~~v~~g~ 288 (367)
T cd08263 265 G-----KPETFKLALDVVR-DGGRAVVVGL 288 (367)
T ss_pred C-----CHHHHHHHHHHHh-cCCEEEEEcc
Confidence 2 1136788999999 9999987653
No 338
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=90.92 E-value=3 Score=36.89 Aligned_cols=100 Identities=17% Similarity=0.113 Sum_probs=62.9
Q ss_pred CCCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCC--ch-hhhhhccCCCCceeeEE
Q 037961 31 TPKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTM--SI-TELEQNVATQSSVDLVT 104 (262)
Q Consensus 31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~D~V~ 104 (262)
..++.+||=.|+|. |.++.++++. |. +|+++|.+++.++.+++.....++..... .. ..+..+ ..+.+|+|+
T Consensus 185 ~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~--~~~~~d~vi 262 (369)
T cd08301 185 VKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEM--TGGGVDYSF 262 (369)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHH--hCCCCCEEE
Confidence 35778888888764 6666666664 76 79999999999999887532222221110 01 111122 223689887
Q ss_pred EccccccCChhHHHHHHHHhhcCCC-eEEEEEecC
Q 037961 105 IASALHWFDLPQFYKQVKWVLKKPS-GVIAAWTYT 138 (262)
Q Consensus 105 ~~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~~~ 138 (262)
-... ....+..+.+.++ +| |++++....
T Consensus 263 d~~G-----~~~~~~~~~~~~~-~~~g~~v~~g~~ 291 (369)
T cd08301 263 ECTG-----NIDAMISAFECVH-DGWGVTVLLGVP 291 (369)
T ss_pred ECCC-----ChHHHHHHHHHhh-cCCCEEEEECcC
Confidence 4321 2457788889999 86 999886543
No 339
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=90.88 E-value=3.1 Score=36.78 Aligned_cols=99 Identities=14% Similarity=0.089 Sum_probs=61.3
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCC--Cch-hhhhhccCCCCceeeEEE
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPT--MSI-TELEQNVATQSSVDLVTI 105 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~D~V~~ 105 (262)
.++.+||=.|+|. |..+..+++. |. +|+++|.++.-++.+++..--.++.... ... ..+..+ ..+.+|+|+-
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~--~~~g~d~vid 260 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREM--TGGGVDYSFE 260 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHH--hCCCCCEEEE
Confidence 5677888888764 6666666664 76 7999999999998887652212221111 000 112222 1246899984
Q ss_pred ccccccCChhHHHHHHHHhhcCCC-eEEEEEecC
Q 037961 106 ASALHWFDLPQFYKQVKWVLKKPS-GVIAAWTYT 138 (262)
Q Consensus 106 ~~~~~~~d~~~~l~~~~r~Lk~pg-G~l~i~~~~ 138 (262)
... ....+.++.+.|+ ++ |++++....
T Consensus 261 ~~g-----~~~~~~~~~~~l~-~~~G~~v~~g~~ 288 (365)
T cd08277 261 CTG-----NADLMNEALESTK-LGWGVSVVVGVP 288 (365)
T ss_pred CCC-----ChHHHHHHHHhcc-cCCCEEEEEcCC
Confidence 322 1357788899998 75 999886543
No 340
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=90.84 E-value=3.4 Score=36.57 Aligned_cols=98 Identities=20% Similarity=0.184 Sum_probs=62.2
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~ 107 (262)
.++.+||=.|+|. |..+..+++. |. .++++|.++...+.+++..-..++....... ..+.... ...+|+|+-..
T Consensus 185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~--~~~~d~vld~~ 262 (365)
T cd08278 185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREIT--GGGVDYALDTT 262 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHh--CCCCcEEEECC
Confidence 4667778788764 6677677764 77 5999999999888877653222222221111 1122222 34689998532
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
. ....+.++.+.|+ ++|+++.+..
T Consensus 263 g-----~~~~~~~~~~~l~-~~G~~v~~g~ 286 (365)
T cd08278 263 G-----VPAVIEQAVDALA-PRGTLALVGA 286 (365)
T ss_pred C-----CcHHHHHHHHHhc-cCCEEEEeCc
Confidence 2 1356889999999 9999987654
No 341
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=90.83 E-value=4.1 Score=35.64 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=60.6
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCC-CCch-hhhhhccCCCCceeeEEEc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTP-TMSI-TELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~D~V~~~ 106 (262)
.++.+||=.|+|. |..+.++++. |. +|++++.+++..+.+++.. ....... .... ..+... .....+|+|+-.
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~g-a~~~i~~~~~~~~~~l~~~-~~~~~~d~vid~ 248 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELG-ATIVLDPTEVDVVAEVRKL-TGGGGVDVSFDC 248 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC-CCEEECCCccCHHHHHHHH-hCCCCCCEEEEC
Confidence 4667777777653 5566666654 77 7999999999888887642 2222211 1111 112222 123459999854
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.. ....++.+.+.|+ ++|+++....
T Consensus 249 ~g-----~~~~~~~~~~~l~-~~G~~v~~g~ 273 (351)
T cd08233 249 AG-----VQATLDTAIDALR-PRGTAVNVAI 273 (351)
T ss_pred CC-----CHHHHHHHHHhcc-CCCEEEEEcc
Confidence 22 1347788999999 9999987554
No 342
>PRK13699 putative methylase; Provisional
Probab=90.78 E-value=0.32 Score=40.31 Aligned_cols=42 Identities=14% Similarity=0.175 Sum_probs=30.3
Q ss_pred CCCCceeeEEEccccc-----cCC-----------hhHHHHHHHHhhcCCCeEEEEEec
Q 037961 95 ATQSSVDLVTIASALH-----WFD-----------LPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 95 ~~~~~~D~V~~~~~~~-----~~d-----------~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
++++++|+|+...... ..+ ...++.+++|+|| |||.++++..
T Consensus 16 lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLK-pgg~l~if~~ 73 (227)
T PRK13699 16 FPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLK-KDALMVSFYG 73 (227)
T ss_pred CCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcC-CCCEEEEEec
Confidence 5788999998864331 000 2458899999999 9999988543
No 343
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=90.69 E-value=0.74 Score=44.41 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=58.5
Q ss_pred CCCCeEEEEcCcccHhHHHHHhh--------------CCeEEEEcCCH---HHHHHHhc-------------------CC
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQI--------------YQHVIATDTSP---KQLKFAIK-------------------LP 75 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~--------------~~~v~~vD~s~---~~~~~a~~-------------------~~ 75 (262)
.+.-+|+|+|-|+|.......+. --+++++|..| +.+..+.+ .+
T Consensus 56 ~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 135 (662)
T PRK01747 56 RRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLP 135 (662)
T ss_pred CCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCC
Confidence 34478999999999866654421 12788999643 33332211 01
Q ss_pred Cc---eEEeCC---CCchhhhhhc-cCCCCceeeEEEccccccCC----hhHHHHHHHHhhcCCCeEEEEEec
Q 037961 76 NI---RYQLTP---TMSITELEQN-VATQSSVDLVTIASALHWFD----LPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 76 ~~---~~~~~~---~~~~~~~~~~-~~~~~~~D~V~~~~~~~~~d----~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
++ .+..+. .+-.+|+.+. +--...+|+|+...--.--+ .+.++++++|+++ |||+|+-++.
T Consensus 136 g~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~-~~~~~~t~t~ 207 (662)
T PRK01747 136 GCHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLAR-PGATLATFTS 207 (662)
T ss_pred CceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhC-CCCEEEEeeh
Confidence 11 111111 1222455442 21235688888532111111 2558999999999 9999997654
No 344
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=90.67 E-value=2.4 Score=35.28 Aligned_cols=99 Identities=14% Similarity=0.092 Sum_probs=50.9
Q ss_pred CCCeEEEEcCccc-HhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----CCceEEeCCCCchhhhhh-ccC-CCCceeeEE
Q 037961 33 KRNLAWDVGTRSG-QAAASLAQIYQHVIATDTSPKQLKFAIKL-----PNIRYQLTPTMSITELEQ-NVA-TQSSVDLVT 104 (262)
Q Consensus 33 ~~~~vlDvGcG~G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~~~~~~~~~~-~~~-~~~~~D~V~ 104 (262)
.+..||-+|=..- +++..+.....+|+.+|+++.+++..++. -.++....| +.+ +|- -.++||+++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~D------lR~~LP~~~~~~fD~f~ 117 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYD------LRDPLPEELRGKFDVFF 117 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---------TTS---TTTSS-BSEEE
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEec------ccccCCHHHhcCCCEEE
Confidence 6788999986553 23333444578999999999999976642 236666655 211 221 247899999
Q ss_pred EccccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
+...----...-+++.....||.+||. ..+.++
T Consensus 118 TDPPyT~~G~~LFlsRgi~~Lk~~g~~-gy~~~~ 150 (243)
T PF01861_consen 118 TDPPYTPEGLKLFLSRGIEALKGEGCA-GYFGFT 150 (243)
T ss_dssp E---SSHHHHHHHHHHHHHTB-STT-E-EEEEE-
T ss_pred eCCCCCHHHHHHHHHHHHHHhCCCCce-EEEEEe
Confidence 864422113445899999999944444 444444
No 345
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=90.60 E-value=3.4 Score=34.68 Aligned_cols=95 Identities=20% Similarity=0.158 Sum_probs=61.0
Q ss_pred CCCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961 31 TPKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~ 107 (262)
..++.++|=.|||. |..+..+++. +.+ |++++.+++.++.+++.......... .. .. .....+|+|+...
T Consensus 95 ~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~----~~-~~--~~~~~~d~vl~~~ 167 (277)
T cd08255 95 PRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAAD----TA-DE--IGGRGADVVIEAS 167 (277)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCcccccc----ch-hh--hcCCCCCEEEEcc
Confidence 34667778788875 6677767664 777 99999999998877765301110000 00 00 1344689988532
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
. ....+.+..+.|+ ++|+++.+...
T Consensus 168 ~-----~~~~~~~~~~~l~-~~g~~~~~g~~ 192 (277)
T cd08255 168 G-----SPSALETALRLLR-DRGRVVLVGWY 192 (277)
T ss_pred C-----ChHHHHHHHHHhc-CCcEEEEEecc
Confidence 1 2357788899999 99999876543
No 346
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=90.59 E-value=1.2 Score=36.99 Aligned_cols=100 Identities=18% Similarity=0.133 Sum_probs=65.3
Q ss_pred CCCCCeEEEEcCcccHhHHHHHhh-CC--eEEEEcCCH----HHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceee
Q 037961 31 TPKRNLAWDVGTRSGQAAASLAQI-YQ--HVIATDTSP----KQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDL 102 (262)
Q Consensus 31 ~~~~~~vlDvGcG~G~~~~~l~~~-~~--~v~~vD~s~----~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~ 102 (262)
++++..||=+|+++|....++..- +. -|++++.|+ +.+..|++++||--+..| ..+ ......-+-+|+
T Consensus 154 ikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkRtNiiPIiEDArhP----~KYRmlVgmVDv 229 (317)
T KOG1596|consen 154 IKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKRTNIIPIIEDARHP----AKYRMLVGMVDV 229 (317)
T ss_pred ecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhccCCceeeeccCCCc----hheeeeeeeEEE
Confidence 368899999999999998888774 33 488999886 456677788887766655 211 001112235777
Q ss_pred EEEccccccCChhH-HHHHHHHhhcCCCeEEEEEec
Q 037961 103 VTIASALHWFDLPQ-FYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 103 V~~~~~~~~~d~~~-~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
|++..+- -|... +.-++.-.|| +||.+++..-
T Consensus 230 IFaDvaq--pdq~RivaLNA~~FLk-~gGhfvisik 262 (317)
T KOG1596|consen 230 IFADVAQ--PDQARIVALNAQYFLK-NGGHFVISIK 262 (317)
T ss_pred EeccCCC--chhhhhhhhhhhhhhc-cCCeEEEEEe
Confidence 7765331 12222 3446677899 9999998543
No 347
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=90.44 E-value=4.1 Score=35.49 Aligned_cols=99 Identities=22% Similarity=0.220 Sum_probs=59.2
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-Y-QHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~ 107 (262)
.++.+||=.|+|. |..+..+++. | .++++++.++.....+++..--.++....... ..+..+. ....+|+|+...
T Consensus 165 ~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~-~~~~~d~vld~~ 243 (345)
T cd08286 165 KPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSAKGDAIEQVLELT-DGRGVDVVIEAV 243 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceeccccccHHHHHHHHh-CCCCCCEEEECC
Confidence 4566666677653 5555556654 6 68999999988877777643212221111111 1122221 344699998542
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.....+..+.+.|+ ++|+++.+..
T Consensus 244 -----g~~~~~~~~~~~l~-~~g~~v~~g~ 267 (345)
T cd08286 244 -----GIPATFELCQELVA-PGGHIANVGV 267 (345)
T ss_pred -----CCHHHHHHHHHhcc-CCcEEEEecc
Confidence 22446888889999 9999987653
No 348
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=90.41 E-value=4.6 Score=35.52 Aligned_cols=98 Identities=18% Similarity=0.115 Sum_probs=60.0
Q ss_pred CCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCchh----hhhhccCCCCceeeEEE
Q 037961 33 KRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSIT----ELEQNVATQSSVDLVTI 105 (262)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~D~V~~ 105 (262)
++.+||=.|+|. |..+..+++. |. +|++++.++...+.+++..--.++........ .+.... ....+|+|+-
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~-~~~~~d~vid 255 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDIT-GGRGADVVIE 255 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHh-CCCCCcEEEE
Confidence 566777778763 5566666664 77 89999999988887765422122221111111 122221 2346999984
Q ss_pred ccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
... ....+.+..+.|+ ++|+++.+..
T Consensus 256 ~~g-----~~~~~~~~~~~l~-~~G~~v~~g~ 281 (361)
T cd08231 256 ASG-----HPAAVPEGLELLR-RGGTYVLVGS 281 (361)
T ss_pred CCC-----ChHHHHHHHHHhc-cCCEEEEEcC
Confidence 321 1356788899999 9999987653
No 349
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=90.36 E-value=2.8 Score=37.04 Aligned_cols=96 Identities=16% Similarity=0.113 Sum_probs=57.4
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL 109 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~ 109 (262)
.++.+||-.|+|. |..+.++++. |.++++++.+++....+.+.-+......... ...+... ...+|+|+-...
T Consensus 179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~-~~~~~~~---~~~~D~vid~~g- 253 (357)
T PLN02514 179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSD-AAEMQEA---ADSLDYIIDTVP- 253 (357)
T ss_pred CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCC-hHHHHHh---cCCCcEEEECCC-
Confidence 3567777778764 6777777764 7889988888876655533222222211100 0111111 124888874322
Q ss_pred ccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 110 HWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
....+..+.+.|+ +||+++.+..
T Consensus 254 ----~~~~~~~~~~~l~-~~G~iv~~G~ 276 (357)
T PLN02514 254 ----VFHPLEPYLSLLK-LDGKLILMGV 276 (357)
T ss_pred ----chHHHHHHHHHhc-cCCEEEEECC
Confidence 2357788899999 9999998654
No 350
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=90.19 E-value=0.63 Score=42.46 Aligned_cols=110 Identities=15% Similarity=0.197 Sum_probs=69.5
Q ss_pred CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhh---ccCCCCcee
Q 037961 33 KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQ---NVATQSSVD 101 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~---~~~~~~~~D 101 (262)
....+|-+|-|.|.+...+... ..++++++++|.|++.|+++ ....+...|.+ ..... ..-.+..||
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl--~~~~~~~k~~~~~~~~d 372 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGL--DFLQRTAKSQQEDICPD 372 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhch--HHHHHHhhccccccCCc
Confidence 3456788999999998887654 47899999999999999863 11222222210 11111 112567899
Q ss_pred eEEE----ccccccC-C-h-----hHHHHHHHHhhcCCCeEEEE-EecCCCcccHHH
Q 037961 102 LVTI----ASALHWF-D-L-----PQFYKQVKWVLKKPSGVIAA-WTYTMPEINESV 146 (262)
Q Consensus 102 ~V~~----~~~~~~~-d-~-----~~~l~~~~r~Lk~pgG~l~i-~~~~~~~~~~~~ 146 (262)
++.. .. -|-+ . + +.++..+..+|. |.|.+++ ....+..+.+++
T Consensus 373 vl~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~-p~g~f~inlv~r~~~~~~~~ 427 (482)
T KOG2352|consen 373 VLMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILP-PRGMFIINLVTRNSSFKDEV 427 (482)
T ss_pred EEEEECCCCC-cccCcCCchHHHHHHHHHHHhhccC-ccceEEEEEecCCcchhHHH
Confidence 9975 22 4444 2 2 237888999999 9999988 333444444433
No 351
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=90.05 E-value=4.6 Score=35.07 Aligned_cols=96 Identities=17% Similarity=0.132 Sum_probs=61.0
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEccc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~~ 108 (262)
.++.+||=.|||. |..+..+++. |.++++++.+++-++.+++..--.++....... ..+..+ ..+|+|+...
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~----~~~d~vi~~~- 236 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQEL----GGAKLILATA- 236 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhc----CCCCEEEECC-
Confidence 4667888888654 6666666664 889999999998888887653222222211111 111111 3489888531
Q ss_pred cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.....+..+.+.|+ ++|+++.+..
T Consensus 237 ----g~~~~~~~~~~~l~-~~G~~v~~g~ 260 (333)
T cd08296 237 ----PNAKAISALVGGLA-PRGKLLILGA 260 (333)
T ss_pred ----CchHHHHHHHHHcc-cCCEEEEEec
Confidence 12457888999999 9999987654
No 352
>PRK11524 putative methyltransferase; Provisional
Probab=90.04 E-value=0.35 Score=41.50 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=30.6
Q ss_pred CCCCceeeEEEcccccc----CC-------------hhHHHHHHHHhhcCCCeEEEEEe
Q 037961 95 ATQSSVDLVTIASALHW----FD-------------LPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 95 ~~~~~~D~V~~~~~~~~----~d-------------~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
+++++||+|++.....- .+ ...++.++.|+|| |||.|+++.
T Consensus 23 l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK-~~G~i~i~~ 80 (284)
T PRK11524 23 IPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLK-KQGTMYIMN 80 (284)
T ss_pred cccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhC-CCcEEEEEc
Confidence 46789999999655321 01 2468899999999 999999853
No 353
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=90.04 E-value=0.35 Score=41.92 Aligned_cols=70 Identities=14% Similarity=0.020 Sum_probs=45.8
Q ss_pred eEEEEcCcccHhHHHHHhhCCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961 36 LAWDVGTRSGQAAASLAQIYQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH 110 (262)
Q Consensus 36 ~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~ 110 (262)
+++|+-||.|.++..+...|.+ +.++|+++..++.-+.+-. ....+|... -+... ++. .+|+++....+.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-~~~~~Di~~-~~~~~--l~~-~~D~l~ggpPCQ 72 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-EVICGDITE-IDPSD--LPK-DVDLLIGGPPCQ 72 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-EEEESHGGG-CHHHH--HHH-T-SEEEEE---T
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-ccccccccc-ccccc--ccc-cceEEEeccCCc
Confidence 5899999999999999988864 6699999999887765423 666655100 11122 333 599999876665
No 354
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=89.92 E-value=1.8 Score=36.57 Aligned_cols=85 Identities=14% Similarity=0.061 Sum_probs=62.5
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW 111 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~ 111 (262)
.+++..+|+|+-+|.+|-+|.+++-.|++||.. .|.+..-....++....|. +...| .....|..+|...-
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng-~ma~sL~dtg~v~h~r~DG-----fk~~P-~r~~idWmVCDmVE-- 280 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNG-PMAQSLMDTGQVTHLREDG-----FKFRP-TRSNIDWMVCDMVE-- 280 (358)
T ss_pred cCCceeeecccCCCccchhhhhcceEEEEeccc-hhhhhhhcccceeeeeccC-----ccccc-CCCCCceEEeehhc--
Confidence 478999999999999999999999999999987 5555555556677666552 22222 35678888875331
Q ss_pred CChhHHHHHHHHhhc
Q 037961 112 FDLPQFYKQVKWVLK 126 (262)
Q Consensus 112 ~d~~~~l~~~~r~Lk 126 (262)
.|.++-+.+...|.
T Consensus 281 -kP~rv~~li~~Wl~ 294 (358)
T COG2933 281 -KPARVAALIAKWLV 294 (358)
T ss_pred -CcHHHHHHHHHHHH
Confidence 46667778888887
No 355
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=89.72 E-value=0.6 Score=36.37 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=52.7
Q ss_pred CeEEEEcCcccHhHHHHHhhCC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-
Q 037961 35 NLAWDVGTRSGQAAASLAQIYQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF- 112 (262)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~- 112 (262)
.+.+-+|...-.+=....++|+ +|+.+|.++--++.--+ ..+.-. .+.+-+.++.--.++||.+.|..++.++
T Consensus 3 ~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~-dr~ssi----~p~df~~~~~~y~~~fD~~as~~siEh~G 77 (177)
T PF03269_consen 3 KSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFR-DRLSSI----LPVDFAKNWQKYAGSFDFAASFSSIEHFG 77 (177)
T ss_pred ceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcccc-cccccc----cHHHHHHHHHHhhccchhhheechhcccc
Confidence 4456666664333333344554 68888886421111100 111111 1111223333345789999998888543
Q ss_pred --------Ch---hHHHHHHHHhhcCCCeEEEE
Q 037961 113 --------DL---PQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 113 --------d~---~~~l~~~~r~Lk~pgG~l~i 134 (262)
|+ .+++.++.++|| |||.|.+
T Consensus 78 LGRYGDPidp~Gdl~~m~~i~~vLK-~GG~L~l 109 (177)
T PF03269_consen 78 LGRYGDPIDPIGDLRAMAKIKCVLK-PGGLLFL 109 (177)
T ss_pred ccccCCCCCccccHHHHHHHHHhhc-cCCeEEE
Confidence 22 337889999999 9999998
No 356
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=89.69 E-value=4.7 Score=34.67 Aligned_cols=95 Identities=12% Similarity=0.084 Sum_probs=60.5
Q ss_pred CCCeEEEEcC-c-ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeC-CCCchhhhhhccCCCCceeeEEEccc
Q 037961 33 KRNLAWDVGT-R-SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLT-PTMSITELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 33 ~~~~vlDvGc-G-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~V~~~~~ 108 (262)
.+.+||=.|+ | .|..+..+++ .|.+|++++.+++..+.+++. ++..... +......+..+ ....+|+|+-...
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~-g~~~v~~~~~~~~~~~~~~--~~~~~d~vld~~g 222 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKL-GAKEVIPREELQEESIKPL--EKQRWAGAVDPVG 222 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHc-CCCEEEcchhHHHHHHHhh--ccCCcCEEEECCc
Confidence 3567788887 3 3666666666 488999999999988888764 2322221 11111112222 2346898874322
Q ss_pred cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
...+.+..+.|+ ++|+++.+..
T Consensus 223 ------~~~~~~~~~~l~-~~G~~i~~g~ 244 (326)
T cd08289 223 ------GKTLAYLLSTLQ-YGGSVAVSGL 244 (326)
T ss_pred ------HHHHHHHHHHhh-cCCEEEEEee
Confidence 246788999999 9999998664
No 357
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=89.67 E-value=5.6 Score=35.06 Aligned_cols=99 Identities=15% Similarity=0.107 Sum_probs=61.0
Q ss_pred CCCCeEEEEcCc-ccHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVGTR-SGQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvGcG-~G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~ 107 (262)
.++.+||-.|+| .|..+..+++. |.+ |++++.++...+.+++..-..++....... ..+..+ .+...+|+|+...
T Consensus 181 ~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~~~~~~~l~~~-~~~~~vd~vld~~ 259 (363)
T cd08279 181 RPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASEDDAVEAVRDL-TDGRGADYAFEAV 259 (363)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCCccHHHHHHHH-cCCCCCCEEEEcC
Confidence 466777777876 36666666664 775 999999998888776542112222211111 112122 1345699888432
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
. ....+.++.+.|+ ++|+++.+..
T Consensus 260 ~-----~~~~~~~~~~~l~-~~G~~v~~g~ 283 (363)
T cd08279 260 G-----RAATIRQALAMTR-KGGTAVVVGM 283 (363)
T ss_pred C-----ChHHHHHHHHHhh-cCCeEEEEec
Confidence 2 1357789999999 9999987654
No 358
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=89.63 E-value=4.7 Score=35.20 Aligned_cols=95 Identities=14% Similarity=0.022 Sum_probs=59.6
Q ss_pred CCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEE-eCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961 33 KRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQ-LTPTMSI-TELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~D~V~~~~ 107 (262)
++.+||-.|+|. |..+..+++. |. .|++++.++...+.+++.. +... ....... ..+.... .. .+|+|+...
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~-~~-~~d~vid~~ 251 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAAG-ADVVVNGSDPDAAKRIIKAA-GG-GVDAVIDFV 251 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhC-CcEEecCCCccHHHHHHHHh-CC-CCcEEEECC
Confidence 567778788763 6666666664 76 7899999998888876542 2222 2211111 1111121 22 689998542
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
. ....+.++.+.|+ ++|+++.+.
T Consensus 252 g-----~~~~~~~~~~~l~-~~g~~v~~g 274 (350)
T cd08240 252 N-----NSATASLAFDILA-KGGKLVLVG 274 (350)
T ss_pred C-----CHHHHHHHHHHhh-cCCeEEEEC
Confidence 2 2457899999999 999998754
No 359
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=89.62 E-value=5.8 Score=34.51 Aligned_cols=99 Identities=20% Similarity=0.170 Sum_probs=60.4
Q ss_pred CCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEccc
Q 037961 33 KRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~~ 108 (262)
++.+||-.|+|. |..+..+++. |. +|++++.++.-.+.+++...-.++....-.. .....+. ....+|+|+-...
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~d~v~d~~g 241 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNVAKEDLRDVMAELG-MTEGFDVGLEMSG 241 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHHHhc-CCCCCCEEEECCC
Confidence 556666677764 6666667664 66 6889998888777766542212221111011 1112221 3456899985322
Q ss_pred cccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
....++.+.+.|+ ++|+++.+...
T Consensus 242 -----~~~~~~~~~~~l~-~~G~~v~~g~~ 265 (341)
T PRK05396 242 -----APSAFRQMLDNMN-HGGRIAMLGIP 265 (341)
T ss_pred -----CHHHHHHHHHHHh-cCCEEEEEecC
Confidence 2457888999999 99999987643
No 360
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=89.58 E-value=6.7 Score=34.11 Aligned_cols=99 Identities=18% Similarity=0.156 Sum_probs=58.9
Q ss_pred CCCCeEEEEcCc-ccHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVGTR-SGQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvGcG-~G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~ 107 (262)
.++.++|-.|+| .|..+..+++. |.+ |++++-++.-.+.+++..--.++....... ..+..+ .....+|+|+-..
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~l~~~-~~~~~~d~vld~~ 238 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFKEDVVKEVADL-TDGEGVDVFLEMS 238 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccccCHHHHHHHh-cCCCCCCEEEECC
Confidence 455666667765 36666666664 776 889988888777776543212221111001 111112 1345689998541
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
. ....+.++.+.|+ ++|+++.+..
T Consensus 239 g-----~~~~~~~~~~~l~-~~g~~v~~g~ 262 (340)
T TIGR00692 239 G-----APKALEQGLQAVT-PGGRVSLLGL 262 (340)
T ss_pred C-----CHHHHHHHHHhhc-CCCEEEEEcc
Confidence 1 2457889999999 9999987553
No 361
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=89.39 E-value=6.2 Score=34.21 Aligned_cols=99 Identities=18% Similarity=0.133 Sum_probs=60.5
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-Y-QHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~ 108 (262)
.++.+||=.|+|+ |..+..+++. + .+|++++.+++..+.+++..-..++.........+..+ .+...+|+|+-...
T Consensus 166 ~~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~-~~~~~~dvvld~~g 244 (340)
T cd05284 166 DPGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLGADHVLNASDDVVEEVREL-TGGRGADAVIDFVG 244 (340)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhCCcEEEcCCccHHHHHHHH-hCCCCCCEEEEcCC
Confidence 4667778788654 5555556654 6 79999999988888776543112222111001112222 13346999985322
Q ss_pred cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
....+.++.+.|+ ++|+++.+..
T Consensus 245 -----~~~~~~~~~~~l~-~~g~~i~~g~ 267 (340)
T cd05284 245 -----SDETLALAAKLLA-KGGRYVIVGY 267 (340)
T ss_pred -----CHHHHHHHHHHhh-cCCEEEEEcC
Confidence 1357888999999 9999987653
No 362
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=89.38 E-value=6.7 Score=33.22 Aligned_cols=99 Identities=18% Similarity=0.143 Sum_probs=60.3
Q ss_pred CCCCCeEEEEcC--cccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961 31 TPKRNLAWDVGT--RSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 31 ~~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~ 106 (262)
..++..|+-.|| +.|..+..++. .|.++++++.++...+.+++..--.......... ..+... .....+|+++..
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~-~~~~~~d~v~~~ 215 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALARALGADHVIDYRDPDLRERVKAL-TGGRGVDVVYDP 215 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHHcCCceeeecCCccHHHHHHHH-cCCCCcEEEEEC
Confidence 356788899998 24666666665 4889999999998888776542111121111011 111122 133468998854
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.. ...+..+.+.++ ++|+++....
T Consensus 216 ~g------~~~~~~~~~~~~-~~g~~v~~~~ 239 (323)
T cd08241 216 VG------GDVFEASLRSLA-WGGRLLVIGF 239 (323)
T ss_pred cc------HHHHHHHHHhhc-cCCEEEEEcc
Confidence 32 235667788999 9999887543
No 363
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=89.23 E-value=1.5 Score=38.55 Aligned_cols=74 Identities=16% Similarity=0.099 Sum_probs=50.7
Q ss_pred CCeEEEEcCcccHhHHHHHhhCCe-EEEEcCCHHHHHHHhcC-CCceEEeCC--CCchhhhhhccCCCCceeeEEEcccc
Q 037961 34 RNLAWDVGTRSGQAAASLAQIYQH-VIATDTSPKQLKFAIKL-PNIRYQLTP--TMSITELEQNVATQSSVDLVTIASAL 109 (262)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~D~V~~~~~~ 109 (262)
...++|+-||.|.+..-+...|.+ +.++|+++..++.-+.+ +.......+ ++. .+.+ ....+|+++....+
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~---~~~~--~~~~~DvligGpPC 77 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPHGDIILGDIKELD---GEAL--RKSDVDVLIGGPPC 77 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCCCceeechHhhcC---hhhc--cccCCCEEEeCCCC
Confidence 356899999999999999888876 55999999999876654 334444444 111 1111 12279999998777
Q ss_pred ccC
Q 037961 110 HWF 112 (262)
Q Consensus 110 ~~~ 112 (262)
+-+
T Consensus 78 Q~F 80 (328)
T COG0270 78 QDF 80 (328)
T ss_pred cch
Confidence 633
No 364
>PTZ00357 methyltransferase; Provisional
Probab=89.20 E-value=1.1 Score=42.94 Aligned_cols=127 Identities=16% Similarity=0.155 Sum_probs=70.7
Q ss_pred hhhHHHHHHHHhhCCCChHHHHHHHHh---------------------hCC------CCCeEEEEcCcccHhHHHHHhh-
Q 037961 3 ELFIKQANLYAVARPNYPKELFKLIAS---------------------KTP------KRNLAWDVGTRSGQAAASLAQI- 54 (262)
Q Consensus 3 ~~F~~~a~~Y~~~rp~yp~~~~~~l~~---------------------~~~------~~~~vlDvGcG~G~~~~~l~~~- 54 (262)
+.|+++.-.|+++.-..-..+.++... ..+ ...+|+-+|+|-|-+.....+.
T Consensus 643 EVFEKDpVKYdqYE~AI~kAL~Dw~~~~~~~~~~~~ns~~~~k~~~mdrvp~~~~d~~~vVImVVGAGRGPLVdraLrAa 722 (1072)
T PTZ00357 643 EVFERDARKYRQYREAVFHYVRDWYAAGAEQQHAHQNSEFFAKHGVMQRVPVPSPDERTLHLVLLGCGRGPLIDECLHAV 722 (1072)
T ss_pred HHHcCCcHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccCCCceEEEEEEcCCccHHHHHHHHHH
Confidence 678999999998753333333332210 010 1135899999999876655432
Q ss_pred ---C--CeEEEEcCCHHHHHHHh-c--C----C--------CceEEeCC--CCchhhh-h--hccCCCCceeeEEEcccc
Q 037961 55 ---Y--QHVIATDTSPKQLKFAI-K--L----P--------NIRYQLTP--TMSITEL-E--QNVATQSSVDLVTIASAL 109 (262)
Q Consensus 55 ---~--~~v~~vD~s~~~~~~a~-~--~----~--------~~~~~~~~--~~~~~~~-~--~~~~~~~~~D~V~~~~~~ 109 (262)
+ .+|++||-++..+.... + + . .++++..| .+..... . ..|..-+++|+||+- .|
T Consensus 723 k~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSE-LL 801 (1072)
T PTZ00357 723 SALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSE-LL 801 (1072)
T ss_pred HHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccccccccccccccceehHh-hh
Confidence 2 47999999966332221 1 1 1 26777766 3322110 0 112222479999872 23
Q ss_pred ccC-Ch---hHHHHHHHHhhcCC----CeE
Q 037961 110 HWF-DL---PQFYKQVKWVLKKP----SGV 131 (262)
Q Consensus 110 ~~~-d~---~~~l~~~~r~Lk~p----gG~ 131 (262)
--| |- .+.|..+.+.|| + +|+
T Consensus 802 GSFGDNELSPECLDGaQrfLK-diqhsdGI 830 (1072)
T PTZ00357 802 GSLGDNELSPECLEAFHAQLE-DIQLSRGI 830 (1072)
T ss_pred cccccccCCHHHHHHHHHhhh-hhcccccc
Confidence 334 32 247777888887 6 775
No 365
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=89.15 E-value=5.3 Score=34.79 Aligned_cols=98 Identities=22% Similarity=0.210 Sum_probs=58.6
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~ 108 (262)
.++.+||-.|+|. |.++..+++. |. +|++++-++.-...+++..--.++.........+..+ ...+.+|+|+.+..
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~vd~vld~~g 240 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINPREEDVVEVKSV-TDGTGVDVVLEMSG 240 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCcccccHHHHHHH-cCCCCCCEEEECCC
Confidence 4566666677764 6677777764 66 6889888877766666542211221111001112222 13456899985322
Q ss_pred cccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 109 LHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
....+.++.+.|+ ++|+++...
T Consensus 241 -----~~~~~~~~~~~l~-~~G~~v~~g 262 (341)
T cd05281 241 -----NPKAIEQGLKALT-PGGRVSILG 262 (341)
T ss_pred -----CHHHHHHHHHHhc-cCCEEEEEc
Confidence 2356788999999 999998754
No 366
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=89.14 E-value=6.6 Score=28.23 Aligned_cols=87 Identities=17% Similarity=0.142 Sum_probs=55.2
Q ss_pred CcccHhHHHHHh----hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCChhH-
Q 037961 42 TRSGQAAASLAQ----IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQ- 116 (262)
Q Consensus 42 cG~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~- 116 (262)
||.|..+..+++ .+.+|+.+|.+++.++.++.. .+.++.+|..+....+...+ .+.|.|++... +...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-~~~~i~gd~~~~~~l~~a~i--~~a~~vv~~~~----~d~~n 76 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-GVEVIYGDATDPEVLERAGI--EKADAVVILTD----DDEEN 76 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-TSEEEES-TTSHHHHHHTTG--GCESEEEEESS----SHHHH
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-ccccccccchhhhHHhhcCc--cccCEEEEccC----CHHHH
Confidence 566677777655 345899999999999988865 47888888333334444443 45788876533 2222
Q ss_pred -HHHHHHHhhcCCCeEEEEEe
Q 037961 117 -FYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 117 -~l~~~~r~Lk~pgG~l~i~~ 136 (262)
.+....+-+. |...+++-.
T Consensus 77 ~~~~~~~r~~~-~~~~ii~~~ 96 (116)
T PF02254_consen 77 LLIALLARELN-PDIRIIARV 96 (116)
T ss_dssp HHHHHHHHHHT-TTSEEEEEE
T ss_pred HHHHHHHHHHC-CCCeEEEEE
Confidence 4455666677 777777633
No 367
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.14 E-value=0.56 Score=35.97 Aligned_cols=41 Identities=12% Similarity=0.226 Sum_probs=35.7
Q ss_pred CCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHHhc
Q 037961 33 KRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFAIK 73 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~ 73 (262)
+....+|+|.|.|......++.| ..-+|++++|-.+.+++-
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl 113 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRL 113 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHH
Confidence 44667999999999999998887 578999999999998874
No 368
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=88.88 E-value=2.9 Score=37.61 Aligned_cols=101 Identities=16% Similarity=0.118 Sum_probs=65.7
Q ss_pred CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC------CCceEEeCCCCchhhhhhccCCCCceeeE
Q 037961 33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL------PNIRYQLTPTMSITELEQNVATQSSVDLV 103 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~D~V 103 (262)
++.+|||..+-+|.=|.++|.. -..|++.|.+..-+...+.+ .+......|.. .+..-.++. +||-|
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~---ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGR---EFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcc---cccccccCc-cccee
Confidence 7789999999999888888774 34799999999888876642 34344444310 010011333 89999
Q ss_pred EEcc------------ccccC-C----------hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 104 TIAS------------ALHWF-D----------LPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 104 ~~~~------------~~~~~-d----------~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
+-.- ++-|. . ..+++-.+..+++ +||+|+-.+++
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~-~GGvLVYSTCS 373 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVK-AGGVLVYSTCS 373 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhcc-CCcEEEEEeee
Confidence 7421 12222 1 2336678889999 99999986655
No 369
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=88.83 E-value=6.1 Score=35.65 Aligned_cols=97 Identities=21% Similarity=0.249 Sum_probs=60.3
Q ss_pred CCCCeEEEEc-Cc-ccHhHHHHHhh-CC---eEEEEcCCHHHHHHHhcC-C------Cce--EEeCCC-Cch-hhhhhcc
Q 037961 32 PKRNLAWDVG-TR-SGQAAASLAQI-YQ---HVIATDTSPKQLKFAIKL-P------NIR--YQLTPT-MSI-TELEQNV 94 (262)
Q Consensus 32 ~~~~~vlDvG-cG-~G~~~~~l~~~-~~---~v~~vD~s~~~~~~a~~~-~------~~~--~~~~~~-~~~-~~~~~~~ 94 (262)
.++.+||=+| +| .|..+.++++. |. +|+++|.++.-++.+++. . +.. ++.... -.. .....+.
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHh
Confidence 4667788887 46 48888888775 32 799999999999988874 1 222 221110 000 1111111
Q ss_pred CCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961 95 ATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAW 135 (262)
Q Consensus 95 ~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~ 135 (262)
....+|+|+.... ....+..+.+.++ ++|.++++
T Consensus 254 -~g~g~D~vid~~g-----~~~~~~~a~~~l~-~~G~~v~~ 287 (410)
T cd08238 254 -GGQGFDDVFVFVP-----VPELVEEADTLLA-PDGCLNFF 287 (410)
T ss_pred -CCCCCCEEEEcCC-----CHHHHHHHHHHhc-cCCeEEEE
Confidence 2346898885322 2467888999999 88877664
No 370
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=88.42 E-value=8.5 Score=32.71 Aligned_cols=95 Identities=21% Similarity=0.180 Sum_probs=61.9
Q ss_pred CCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~ 107 (262)
.++..||=.|+ +.|..+..+++. |.+|+++..+++..+.+++. ++.......-.. ..+..+ ...+|+|+...
T Consensus 141 ~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~i~~~---~~~~d~vl~~~ 216 (320)
T cd08243 141 QPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLKEL-GADEVVIDDGAIAEQLRAA---PGGFDKVLELV 216 (320)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc-CCcEEEecCccHHHHHHHh---CCCceEEEECC
Confidence 46678888876 357777777764 88999999999888887654 222221111001 112222 45699998543
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
. ...+.++.+.|+ ++|+++.+..
T Consensus 217 ~------~~~~~~~~~~l~-~~g~~v~~g~ 239 (320)
T cd08243 217 G------TATLKDSLRHLR-PGGIVCMTGL 239 (320)
T ss_pred C------hHHHHHHHHHhc-cCCEEEEEcc
Confidence 2 246888899999 9999987553
No 371
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=88.32 E-value=0.73 Score=38.75 Aligned_cols=40 Identities=13% Similarity=0.072 Sum_probs=30.2
Q ss_pred CCeEEEEcCcccHhHHHHHhh----------CCeEEEEcCCHHHHHHHhc
Q 037961 34 RNLAWDVGTRSGQAAASLAQI----------YQHVIATDTSPKQLKFAIK 73 (262)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~----------~~~v~~vD~s~~~~~~a~~ 73 (262)
.-.|+|+|+|+|.++..+++. ..+++-||+||.+.+.-++
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~ 68 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKE 68 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHH
Confidence 368999999999999988763 2479999999999876553
No 372
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=88.28 E-value=2.2 Score=36.98 Aligned_cols=94 Identities=19% Similarity=0.154 Sum_probs=66.0
Q ss_pred CCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcC--CCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961 34 RNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKL--PNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL 109 (262)
Q Consensus 34 ~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~ 109 (262)
+..|.=+|-|. |..+..++- .+++|+-+|.|.+-+++.... .++...-.. ...++. .-.+.|+|+..--+
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st---~~~iee---~v~~aDlvIgaVLI 241 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYST---PSNIEE---AVKKADLVIGAVLI 241 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcC---HHHHHH---HhhhccEEEEEEEe
Confidence 34567788775 666666654 589999999999988877654 334444332 112222 23568999988777
Q ss_pred ccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961 110 HWF-DLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 110 ~~~-d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
.-- +|.-+.+++.+.|| ||++++=
T Consensus 242 pgakaPkLvt~e~vk~Mk-pGsVivD 266 (371)
T COG0686 242 PGAKAPKLVTREMVKQMK-PGSVIVD 266 (371)
T ss_pred cCCCCceehhHHHHHhcC-CCcEEEE
Confidence 777 67778999999999 9999873
No 373
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=88.24 E-value=7.1 Score=33.50 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=58.6
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL 109 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~ 109 (262)
.++.+||=.|+|. |..+..+++ .|.++++++.+++..+.+++. ++...... ... .....+|+|+-..
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~-g~~~~~~~-------~~~-~~~~~~d~vid~~-- 222 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRL-GVETVLPD-------EAE-SEGGGFDVVVEAT-- 222 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHc-CCcEEeCc-------ccc-ccCCCCCEEEECC--
Confidence 4667777777653 555555555 488999999999999988874 33332211 000 1345699998532
Q ss_pred ccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 110 HWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 110 ~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
.....+..+.+.|+ ++|++++
T Consensus 223 ---g~~~~~~~~~~~l~-~~g~~v~ 243 (319)
T cd08242 223 ---GSPSGLELALRLVR-PRGTVVL 243 (319)
T ss_pred ---CChHHHHHHHHHhh-cCCEEEE
Confidence 12457788889999 9999987
No 374
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=88.12 E-value=9.4 Score=32.21 Aligned_cols=97 Identities=13% Similarity=0.079 Sum_probs=61.3
Q ss_pred CCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEE-eCCCCch-hhhhhccCCCCceeeEEEc
Q 037961 32 PKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQ-LTPTMSI-TELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~D~V~~~ 106 (262)
.++..||=.|+ +.|..+..+++. |.++++++.++...+.+++.. +... ....... ..+..+ .....+|+|+..
T Consensus 135 ~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~ 212 (320)
T cd05286 135 KPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAELARAAG-ADHVINYRDEDFVERVREI-TGGRGVDVVYDG 212 (320)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHCC-CCEEEeCCchhHHHHHHHH-cCCCCeeEEEEC
Confidence 46778888884 357777777664 889999999999888886542 3222 2211011 112222 134469999854
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.. ...+..+.+.|+ ++|+++.+..
T Consensus 213 ~~------~~~~~~~~~~l~-~~g~~v~~g~ 236 (320)
T cd05286 213 VG------KDTFEGSLDSLR-PRGTLVSFGN 236 (320)
T ss_pred CC------cHhHHHHHHhhc-cCcEEEEEec
Confidence 32 246778889999 9999887553
No 375
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=88.03 E-value=7.6 Score=33.45 Aligned_cols=89 Identities=13% Similarity=0.074 Sum_probs=57.3
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL 109 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~ 109 (262)
.++..+|=.|||. |..+..+++ .+.++++++.++...+.+++. ++...... ... +...+|+++....
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~-g~~~~~~~-------~~~--~~~~vD~vi~~~~- 234 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELAREL-GADWAGDS-------DDL--PPEPLDAAIIFAP- 234 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-CCcEEecc-------Ccc--CCCcccEEEEcCC-
Confidence 4566666677764 555555555 488999999998888877654 23222111 000 2345888874311
Q ss_pred ccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 110 HWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
....++++.+.|+ ++|+++...
T Consensus 235 ----~~~~~~~~~~~l~-~~G~~v~~g 256 (329)
T cd08298 235 ----VGALVPAALRAVK-KGGRVVLAG 256 (329)
T ss_pred ----cHHHHHHHHHHhh-cCCEEEEEc
Confidence 1357899999999 999999755
No 376
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=87.82 E-value=2.9 Score=35.64 Aligned_cols=83 Identities=20% Similarity=0.157 Sum_probs=52.0
Q ss_pred EEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCCh
Q 037961 37 AWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDL 114 (262)
Q Consensus 37 vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~ 114 (262)
|.=||+|. |.++..|.+.+.+|+++|.+++.++.+.+...+..... +.+. -...|+|+.+..... .
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~------~~~~----~~~aDlVilavp~~~--~ 70 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEAST------DLSL----LKDCDLVILALPIGL--L 70 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccC------CHhH----hcCCCEEEEcCCHHH--H
Confidence 55578885 56677777788999999999999888775422221111 1111 134799987654322 2
Q ss_pred hHHHHHHHHhhcCCCeEE
Q 037961 115 PQFYKQVKWVLKKPSGVI 132 (262)
Q Consensus 115 ~~~l~~~~r~Lk~pgG~l 132 (262)
.++++++...++ ++-.+
T Consensus 71 ~~~~~~l~~~l~-~~~ii 87 (279)
T PRK07417 71 LPPSEQLIPALP-PEAIV 87 (279)
T ss_pred HHHHHHHHHhCC-CCcEE
Confidence 346677777777 66433
No 377
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=87.50 E-value=3.2 Score=34.30 Aligned_cols=70 Identities=14% Similarity=0.111 Sum_probs=47.3
Q ss_pred eEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhc-CCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961 36 LAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIK-LPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 36 ~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~ 107 (262)
.++=+|||. +..+..|.+.|.+|+.+|.+++-++.... ......++++.....-+++.++ ..+|++++..
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi--~~aD~vva~t 74 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGI--DDADAVVAAT 74 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCC--CcCCEEEEee
Confidence 356678875 34555666779999999999999887433 3466777777333344555543 4589998753
No 378
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=87.36 E-value=2.3 Score=38.02 Aligned_cols=100 Identities=18% Similarity=0.069 Sum_probs=55.4
Q ss_pred CCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961 34 RNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW 111 (262)
Q Consensus 34 ~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~ 111 (262)
...|+=+|+|. |..+...+. .|++|+++|.++.-++.+...-...+.... ....++.+. -..+|+|+..-.+.-
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~-~~~~~l~~~---l~~aDvVI~a~~~~g 242 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRY-SNAYEIEDA---VKRADLLIGAVLIPG 242 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEecc-CCHHHHHHH---HccCCEEEEccccCC
Confidence 45588888884 555555444 488999999998877765432111111100 001122221 135799996543321
Q ss_pred CC-hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 112 FD-LPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 112 ~d-~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
.. +.-+-++..+.++ ||++++-..+.
T Consensus 243 ~~~p~lit~~~l~~mk-~g~vIvDva~d 269 (370)
T TIGR00518 243 AKAPKLVSNSLVAQMK-PGAVIVDVAID 269 (370)
T ss_pred CCCCcCcCHHHHhcCC-CCCEEEEEecC
Confidence 21 2223466677789 99888754443
No 379
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=87.06 E-value=0.48 Score=42.48 Aligned_cols=49 Identities=20% Similarity=0.175 Sum_probs=43.6
Q ss_pred HHHHhhCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc
Q 037961 25 KLIASKTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK 73 (262)
Q Consensus 25 ~~l~~~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~ 73 (262)
+.+....+++..|-|+-||.|-++..++..++.|++-|.++++++..+.
T Consensus 241 erlsg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ 289 (495)
T KOG2078|consen 241 ERLSGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKA 289 (495)
T ss_pred HHHhhccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHH
Confidence 3455556788999999999999999999999999999999999999875
No 380
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=87.01 E-value=10 Score=32.89 Aligned_cols=100 Identities=20% Similarity=0.184 Sum_probs=60.9
Q ss_pred CCCCCeEEEEcCc-ccHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961 31 TPKRNLAWDVGTR-SGQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 31 ~~~~~~vlDvGcG-~G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~ 106 (262)
..++.+||=.|+| .|..+..+++. +.+ +++++.+++..+.+++...-.+...+.... ..+... .....+|+|+-.
T Consensus 163 ~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~-~~~~~vd~vld~ 241 (343)
T cd08235 163 IKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTIDAAEEDLVEKVREL-TDGRGADVVIVA 241 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEecCCccCHHHHHHHH-hCCcCCCEEEEC
Confidence 3566777777875 46666666664 778 999999998888776542212222211111 112222 234458999853
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.. -...+..+.+.|+ ++|+++.+..
T Consensus 242 ~~-----~~~~~~~~~~~l~-~~g~~v~~~~ 266 (343)
T cd08235 242 TG-----SPEAQAQALELVR-KGGRILFFGG 266 (343)
T ss_pred CC-----ChHHHHHHHHHhh-cCCEEEEEec
Confidence 22 1347888899999 9999987553
No 381
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=86.72 E-value=1.4 Score=39.46 Aligned_cols=59 Identities=15% Similarity=0.335 Sum_probs=45.5
Q ss_pred CCceEEeCCCCchhhhhhc--cCCCCceeeEEEccccccCChhH---HHHHHHHhhcCCCeEEEEEecCCC
Q 037961 75 PNIRYQLTPTMSITELEQN--VATQSSVDLVTIASALHWFDLPQ---FYKQVKWVLKKPSGVIAAWTYTMP 140 (262)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~--~~~~~~~D~V~~~~~~~~~d~~~---~l~~~~r~Lk~pgG~l~i~~~~~~ 140 (262)
.++++..++ +.+. ..+++++|.++..-.+-|++++. .++++.+.++ |||+++.++...+
T Consensus 275 drv~i~t~s------i~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~-pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDS------IEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTAR-PGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEecc------HHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhC-CCCEEEEeeCCCC
Confidence 566666654 2221 14689999999999999996655 7889999999 9999999887644
No 382
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=86.59 E-value=13 Score=28.61 Aligned_cols=105 Identities=11% Similarity=0.088 Sum_probs=53.2
Q ss_pred CCeEEEEcCcccHhHHHHH-------hhCCeEEEEcCCHHHHHHHh-cCCCceEEeCC--C--------C-c------hh
Q 037961 34 RNLAWDVGTRSGQAAASLA-------QIYQHVIATDTSPKQLKFAI-KLPNIRYQLTP--T--------M-S------IT 88 (262)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~-------~~~~~v~~vD~s~~~~~~a~-~~~~~~~~~~~--~--------~-~------~~ 88 (262)
..++||+-+|.|...+.|- ++..++..+.+....++... ++.+..+.... . . . +.
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~ 84 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYG 84 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHH
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHH
Confidence 3578999999998776553 25779999999988776543 22222211111 0 0 0 01
Q ss_pred hhhhccCCCCceeeEEEccccccCChhH-HHHHHHHhhcCCCe-EEEEEecCC
Q 037961 89 ELEQNVATQSSVDLVTIASALHWFDLPQ-FYKQVKWVLKKPSG-VIAAWTYTM 139 (262)
Q Consensus 89 ~~~~~~~~~~~~D~V~~~~~~~~~d~~~-~l~~~~r~Lk~pgG-~l~i~~~~~ 139 (262)
.....|.....||+|++..+ ||.|+.. +.....+-+.+.|+ .++..+..+
T Consensus 85 ~~~~~p~~~~~yd~II~DEc-H~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 85 HFLLNPCRLKNYDVIIMDEC-HFTDPTSIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp HHHHTSSCTTS-SEEEECTT-T--SHHHHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred HHhcCcccccCccEEEEecc-ccCCHHHHhhheeHHHhhhccCeeEEEEeCCC
Confidence 11112445567999999887 8889888 33334444441443 333344443
No 383
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=86.57 E-value=5 Score=36.55 Aligned_cols=90 Identities=16% Similarity=0.095 Sum_probs=57.0
Q ss_pred CCCeEEEEcCcc-cHhHHHHH-hhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961 33 KRNLAWDVGTRS-GQAAASLA-QIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH 110 (262)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~ 110 (262)
.+.+|+=+|+|. |......+ ..|.+|+.+|.++.-...+... +..+. + .++. -...|+|+....
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~-G~~v~--~------l~ea---l~~aDVVI~aTG-- 276 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD-GFRVM--T------MEEA---AELGDIFVTATG-- 276 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc-CCEec--C------HHHH---HhCCCEEEECCC--
Confidence 678899999986 54443333 3588999999998765555432 33322 1 1111 125799986532
Q ss_pred cCChhHHHH-HHHHhhcCCCeEEEEEecCCC
Q 037961 111 WFDLPQFYK-QVKWVLKKPSGVIAAWTYTMP 140 (262)
Q Consensus 111 ~~d~~~~l~-~~~r~Lk~pgG~l~i~~~~~~ 140 (262)
...++. +....+| +|++++.....+.
T Consensus 277 ---~~~vI~~~~~~~mK-~GailiNvG~~d~ 303 (425)
T PRK05476 277 ---NKDVITAEHMEAMK-DGAILANIGHFDN 303 (425)
T ss_pred ---CHHHHHHHHHhcCC-CCCEEEEcCCCCC
Confidence 234554 7888999 8998887665543
No 384
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=86.45 E-value=8.6 Score=34.44 Aligned_cols=120 Identities=17% Similarity=0.153 Sum_probs=65.5
Q ss_pred CCCeEEEEcCcccHhHHHH----Hhh--C---CeEEEEcC----CHHHHHHHhcC-------CCceEEeCC----CCchh
Q 037961 33 KRNLAWDVGTRSGQAAASL----AQI--Y---QHVIATDT----SPKQLKFAIKL-------PNIRYQLTP----TMSIT 88 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l----~~~--~---~~v~~vD~----s~~~~~~a~~~-------~~~~~~~~~----~~~~~ 88 (262)
+.-+|+|+|.|.|..-..| +.+ + -+|||++. +..-++...++ -++.+.-.. .+..-
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 5568999999999644433 333 2 27999999 66666655431 233332221 11111
Q ss_pred hhhhccCCCCceeeEEEccccccC-Ch-------hHHHHHHHHhhcCCCeEEEE---EecCCCcccHHHHHhhccc
Q 037961 89 ELEQNVATQSSVDLVTIASALHWF-DL-------PQFYKQVKWVLKKPSGVIAA---WTYTMPEINESVGAVFKPF 153 (262)
Q Consensus 89 ~~~~~~~~~~~~D~V~~~~~~~~~-d~-------~~~l~~~~r~Lk~pgG~l~i---~~~~~~~~~~~~~~~~~~~ 153 (262)
+...+.+.++..=+|-+...+|++ +. ...+=...|-|+ |.-.+++ .+.+.+.|...+.+.+..|
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~-P~vvv~~E~ea~~n~~~F~~RF~eal~yY 264 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLN-PKVVVLVEQEADHNSPSFLERFREALHYY 264 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcC-CCEEEEEeecCCCCCCchHHHHHHHHHHH
Confidence 233344445544455577778887 32 222334555678 8866555 2334556656665555444
No 385
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=86.34 E-value=11 Score=32.66 Aligned_cols=97 Identities=13% Similarity=0.087 Sum_probs=58.7
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEe-CCCC-chhhhhhccCCCCceeeEEEc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQL-TPTM-SITELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~D~V~~~ 106 (262)
.++..||=.|||. |..+..+++. |.+ +++++.++.-.+.+++.. +.... .... ....+.... ....+|+|+..
T Consensus 167 ~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g-a~~v~~~~~~~~~~~i~~~~-~~~~~d~il~~ 244 (345)
T cd08287 167 RPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFG-ATDIVAERGEEAVARVRELT-GGVGADAVLEC 244 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC-CceEecCCcccHHHHHHHhc-CCCCCCEEEEC
Confidence 4555655578764 6666666664 664 899999887766666542 22222 1110 011222222 34468988843
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
. .....+..+.+.|+ ++|+++...
T Consensus 245 ~-----g~~~~~~~~~~~l~-~~g~~v~~g 268 (345)
T cd08287 245 V-----GTQESMEQAIAIAR-PGGRVGYVG 268 (345)
T ss_pred C-----CCHHHHHHHHHhhc-cCCEEEEec
Confidence 2 22468899999999 999998754
No 386
>PRK10083 putative oxidoreductase; Provisional
Probab=85.81 E-value=12 Score=32.49 Aligned_cols=98 Identities=14% Similarity=0.196 Sum_probs=59.2
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHh-h-CCe-EEEEcCCHHHHHHHhcCCCceEEeC-CCCchhhhhhccCCCCceeeEEEc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQ-I-YQH-VIATDTSPKQLKFAIKLPNIRYQLT-PTMSITELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~-~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~V~~~ 106 (262)
.++.+||=.|+|. |..+.++++ . |.+ ++++|.+++-.+.+++.. +..... ..... .+.+.-....+|+|+-.
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~G-a~~~i~~~~~~~--~~~~~~~g~~~d~vid~ 235 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESG-ADWVINNAQEPL--GEALEEKGIKPTLIIDA 235 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhC-CcEEecCccccH--HHHHhcCCCCCCEEEEC
Confidence 4677888888764 666666776 3 764 888999998888877642 222211 11000 11111011235677643
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
.. ....+.++.+.|+ ++|+++.+...
T Consensus 236 ~g-----~~~~~~~~~~~l~-~~G~~v~~g~~ 261 (339)
T PRK10083 236 AC-----HPSILEEAVTLAS-PAARIVLMGFS 261 (339)
T ss_pred CC-----CHHHHHHHHHHhh-cCCEEEEEccC
Confidence 22 1347888999999 99999986543
No 387
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=85.67 E-value=10 Score=32.91 Aligned_cols=98 Identities=15% Similarity=0.135 Sum_probs=60.1
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCC-Cch-hhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPT-MSI-TELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~D~V~~~~ 107 (262)
.++.+||=.|||. |..+..+++ .|.++++++.+++..+.+++..-..++.... ... ..+..+. +. .+|+|+...
T Consensus 164 ~~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~-~~-~~d~vi~~~ 241 (345)
T cd08260 164 KPGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLT-GG-GAHVSVDAL 241 (345)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHh-CC-CCCEEEEcC
Confidence 4567778788653 556666665 4889999999998888876542112221111 011 0111121 22 699998542
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
. ....+..+.+.|+ ++|+++.+..
T Consensus 242 g-----~~~~~~~~~~~l~-~~g~~i~~g~ 265 (345)
T cd08260 242 G-----IPETCRNSVASLR-KRGRHVQVGL 265 (345)
T ss_pred C-----CHHHHHHHHHHhh-cCCEEEEeCC
Confidence 2 1457788999999 9999887553
No 388
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=85.63 E-value=15 Score=31.08 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=58.7
Q ss_pred CCCCeEEEEcCc-ccHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVGTR-SGQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvGcG-~G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~ 107 (262)
.++..+|=.|+| .|..+..+++. |.+ ++++.-+++..+.+++..-..+........ ..+..+. ....+|+++-..
T Consensus 128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~-~~~~vd~vld~~ 206 (312)
T cd08269 128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELT-GGAGADVVIEAV 206 (312)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHc-CCCCCCEEEECC
Confidence 466677766754 25555555554 777 999999888777666542212222111001 1122221 334689998542
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
. ....+....+.|+ ++|+++.+..
T Consensus 207 g-----~~~~~~~~~~~l~-~~g~~~~~g~ 230 (312)
T cd08269 207 G-----HQWPLDLAGELVA-ERGRLVIFGY 230 (312)
T ss_pred C-----CHHHHHHHHHHhc-cCCEEEEEcc
Confidence 1 2347888999999 9999997653
No 389
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=85.32 E-value=2.3 Score=37.03 Aligned_cols=67 Identities=10% Similarity=-0.003 Sum_probs=46.5
Q ss_pred EEEEcCcccHhHHHHHhhCCeEE-EEcCCHHHHHHHhcC-CCceEEeCCCCchhhhhhccC-CCCceeeEEEccccc
Q 037961 37 AWDVGTRSGQAAASLAQIYQHVI-ATDTSPKQLKFAIKL-PNIRYQLTPTMSITELEQNVA-TQSSVDLVTIASALH 110 (262)
Q Consensus 37 vlDvGcG~G~~~~~l~~~~~~v~-~vD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~D~V~~~~~~~ 110 (262)
|+|+-||.|.++.-+.+.|.+++ ++|+++..++.-+.+ ++ ....+| +.++.. .-..+|+++....+.
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-~~~~~D------i~~~~~~~~~~~dvl~gg~PCq 70 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-KVPFGD------ITKISPSDIPDFDILLGGFPCQ 70 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-CCCccC------hhhhhhhhCCCcCEEEecCCCc
Confidence 58999999999999988888765 799999999876653 44 334444 222211 112589999865554
No 390
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=85.27 E-value=11 Score=32.59 Aligned_cols=97 Identities=14% Similarity=0.163 Sum_probs=60.3
Q ss_pred CCCCCeEEEEcCcc-cHhHHHHHhh--CCeEEEEcCCHHHHHHHhcCCCceEEeCC-C-Cc-hhhhhhccCCCCceeeEE
Q 037961 31 TPKRNLAWDVGTRS-GQAAASLAQI--YQHVIATDTSPKQLKFAIKLPNIRYQLTP-T-MS-ITELEQNVATQSSVDLVT 104 (262)
Q Consensus 31 ~~~~~~vlDvGcG~-G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~D~V~ 104 (262)
..++.+||=.|+|. |..+..+++. |.++++++.+++..+.+++.. +..+... . .. ...+... . +.+|.++
T Consensus 160 ~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~v~~~--~-~~~d~vi 235 (338)
T PRK09422 160 IKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAKEVG-ADLTINSKRVEDVAKIIQEK--T-GGAHAAV 235 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHHHcC-CcEEecccccccHHHHHHHh--c-CCCcEEE
Confidence 35677888888764 6777777773 889999999999999887652 3222211 0 00 0111111 1 2477444
Q ss_pred EccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 105 IASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 105 ~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.... ....+.++.+.|+ ++|+++.+..
T Consensus 236 ~~~~-----~~~~~~~~~~~l~-~~G~~v~~g~ 262 (338)
T PRK09422 236 VTAV-----AKAAFNQAVDAVR-AGGRVVAVGL 262 (338)
T ss_pred EeCC-----CHHHHHHHHHhcc-CCCEEEEEee
Confidence 2211 1457899999999 9999987653
No 391
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=85.25 E-value=15 Score=32.51 Aligned_cols=101 Identities=17% Similarity=0.069 Sum_probs=61.5
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCC-CchhhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPT-MSITELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~V~~~~ 107 (262)
.++.+||=.|||. |..+..+++. |. +++++|.++.-.+.+++.. ...+.... -....+..+ ....+|+|+-..
T Consensus 175 ~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~i~~~--~~~~~d~v~d~~ 251 (375)
T cd08282 175 QPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIG-AIPIDFSDGDPVEQILGL--EPGGVDRAVDCV 251 (375)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcC-CeEeccCcccHHHHHHHh--hCCCCCEEEECC
Confidence 4566666688864 6666666654 65 7999999998888877653 22221111 001112222 224689998643
Q ss_pred ccc----cC--ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 108 ALH----WF--DLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 108 ~~~----~~--d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
.-. +. +....+.++.++|+ ++|++.+..
T Consensus 252 g~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~g 285 (375)
T cd08282 252 GYEARDRGGEAQPNLVLNQLIRVTR-PGGGIGIVG 285 (375)
T ss_pred CCcccccccccchHHHHHHHHHHhh-cCcEEEEEe
Confidence 321 11 34457889999999 999997644
No 392
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=85.12 E-value=5.6 Score=36.33 Aligned_cols=102 Identities=16% Similarity=0.032 Sum_probs=59.1
Q ss_pred CCCeEEEEcCcccHhHHH--HHh--hCCeEEEEcCCHHHHHHHhcC-CC-----ceEEeCCCCchhhhhhccCC-CCcee
Q 037961 33 KRNLAWDVGTRSGQAAAS--LAQ--IYQHVIATDTSPKQLKFAIKL-PN-----IRYQLTPTMSITELEQNVAT-QSSVD 101 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~--l~~--~~~~v~~vD~s~~~~~~a~~~-~~-----~~~~~~~~~~~~~~~~~~~~-~~~~D 101 (262)
....+.|+|.|.|.-.-. ..- ....++.||.|..|....... .+ -.++..-. ---..+|.. ...||
T Consensus 200 ~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~---~~r~~~pi~~~~~yD 276 (491)
T KOG2539|consen 200 RPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLV---FHRQRLPIDIKNGYD 276 (491)
T ss_pred ChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccc---hhcccCCCCccccee
Confidence 345667887776543332 222 256799999999999877542 11 00110000 000113333 34599
Q ss_pred eEEEccccccC-ChhH----HHHHHHHhhcCCCeEEEEEecC
Q 037961 102 LVTIASALHWF-DLPQ----FYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 102 ~V~~~~~~~~~-d~~~----~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
+|++++.+|.+ .... ..+.+.+..+ +||.+++...+
T Consensus 277 lvi~ah~l~~~~s~~~R~~v~~s~~r~~~r-~g~~lViIe~g 317 (491)
T KOG2539|consen 277 LVICAHKLHELGSKFSRLDVPESLWRKTDR-SGYFLVIIEKG 317 (491)
T ss_pred eEEeeeeeeccCCchhhhhhhHHHHHhccC-CCceEEEEecC
Confidence 99999999987 3322 3344556677 89998874444
No 393
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=85.10 E-value=5.6 Score=36.03 Aligned_cols=101 Identities=18% Similarity=0.074 Sum_probs=62.1
Q ss_pred HHHHHHHhhC---CCCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCC
Q 037961 22 ELFKLIASKT---PKRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVAT 96 (262)
Q Consensus 22 ~~~~~l~~~~---~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (262)
...+.+.... -.+.+|+=+|+|. |......++ .|.+|+++|.++.-...+... +..+. + .++. +
T Consensus 180 s~~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~-G~~v~--~------leea-l- 248 (406)
T TIGR00936 180 STIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD-GFRVM--T------MEEA-A- 248 (406)
T ss_pred hHHHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc-CCEeC--C------HHHH-H-
Confidence 3444444432 3678999999997 555554444 488999999998765555432 33222 1 1111 1
Q ss_pred CCceeeEEEccccccCChhHHHH-HHHHhhcCCCeEEEEEecCCC
Q 037961 97 QSSVDLVTIASALHWFDLPQFYK-QVKWVLKKPSGVIAAWTYTMP 140 (262)
Q Consensus 97 ~~~~D~V~~~~~~~~~d~~~~l~-~~~r~Lk~pgG~l~i~~~~~~ 140 (262)
...|+|+.... ...++. +....+| +|++++.....+.
T Consensus 249 -~~aDVVItaTG-----~~~vI~~~~~~~mK-~GailiN~G~~~~ 286 (406)
T TIGR00936 249 -KIGDIFITATG-----NKDVIRGEHFENMK-DGAIVANIGHFDV 286 (406)
T ss_pred -hcCCEEEECCC-----CHHHHHHHHHhcCC-CCcEEEEECCCCc
Confidence 24699886433 344554 5888999 9999987665543
No 394
>PRK10458 DNA cytosine methylase; Provisional
Probab=84.99 E-value=6.9 Score=36.15 Aligned_cols=40 Identities=10% Similarity=-0.005 Sum_probs=33.2
Q ss_pred CCeEEEEcCcccHhHHHHHhhCCe-EEEEcCCHHHHHHHhc
Q 037961 34 RNLAWDVGTRSGQAAASLAQIYQH-VIATDTSPKQLKFAIK 73 (262)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~~~~-v~~vD~s~~~~~~a~~ 73 (262)
.-+++|+-||.|.++..+-..|.+ |.++|+++..++.-+.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~ 128 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKA 128 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHH
Confidence 458899999999999999887765 5689999998886554
No 395
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=84.43 E-value=16 Score=31.30 Aligned_cols=97 Identities=20% Similarity=0.127 Sum_probs=58.6
Q ss_pred CCCCeEEEEcCc--ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVGTR--SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvGcG--~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~ 107 (262)
.++..+|-.|++ .|.....++. .+.+++.++.++...+.++............... ..+... .....+|+++.+.
T Consensus 165 ~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~~ 243 (342)
T cd08266 165 RPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERAKELGADYVIDYRKEDFVREVREL-TGKRGVDVVVEHV 243 (342)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCeEEecCChHHHHHHHHH-hCCCCCcEEEECC
Confidence 456778878875 4666655555 4889999999988887776432111111111000 111111 1234689998654
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
. ...+.++.+.|+ ++|+++...
T Consensus 244 g------~~~~~~~~~~l~-~~G~~v~~~ 265 (342)
T cd08266 244 G------AATWEKSLKSLA-RGGRLVTCG 265 (342)
T ss_pred c------HHHHHHHHHHhh-cCCEEEEEe
Confidence 3 245677889999 999988754
No 396
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=83.99 E-value=13 Score=32.33 Aligned_cols=95 Identities=21% Similarity=0.189 Sum_probs=58.0
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL 109 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~ 109 (262)
.++.++|=.|||. |..+..+++. +.++++++.+++..+.+++...-.++..... ..... ..+.+|+|+....
T Consensus 168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~--~~~~~---~~~~~d~v~~~~g- 241 (337)
T cd05283 168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDP--EAMKK---AAGSLDLIIDTVS- 241 (337)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcch--hhhhh---ccCCceEEEECCC-
Confidence 4556655577753 5666666654 7899999999988888865431122211110 00111 1356899884322
Q ss_pred ccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 110 HWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
....+..+.+.|+ ++|+++.+..
T Consensus 242 ----~~~~~~~~~~~l~-~~G~~v~~g~ 264 (337)
T cd05283 242 ----ASHDLDPYLSLLK-PGGTLVLVGA 264 (337)
T ss_pred ----CcchHHHHHHHhc-CCCEEEEEec
Confidence 1235788899999 9999987653
No 397
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=83.88 E-value=19 Score=30.84 Aligned_cols=97 Identities=22% Similarity=0.206 Sum_probs=61.0
Q ss_pred CCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCc-h-hhhhhccCCCCceeeEEEc
Q 037961 32 PKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMS-I-TELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~D~V~~~ 106 (262)
.++..||=.|+ +.|..+..+++. |.+++.++-+++..+.+++..-..++.....+ . ..+... .....+|+++..
T Consensus 139 ~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~ 217 (334)
T PTZ00354 139 KKGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDFCKKLAAIILIRYPDEEGFAPKVKKL-TGEKGVNLVLDC 217 (334)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChhHHHHHHHHH-hCCCCceEEEEC
Confidence 46677777774 357777777764 88888899999988888654221122111100 0 111111 134569999864
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
.. ...+..+.+.|+ ++|+++...
T Consensus 218 ~~------~~~~~~~~~~l~-~~g~~i~~~ 240 (334)
T PTZ00354 218 VG------GSYLSETAEVLA-VDGKWIVYG 240 (334)
T ss_pred Cc------hHHHHHHHHHhc-cCCeEEEEe
Confidence 32 357788999999 999998754
No 398
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=83.83 E-value=16 Score=31.15 Aligned_cols=94 Identities=14% Similarity=0.035 Sum_probs=58.7
Q ss_pred CCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceeeEEEcccc
Q 037961 34 RNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIASAL 109 (262)
Q Consensus 34 ~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~V~~~~~~ 109 (262)
+..||=.|+ +.|.++..+++. |.+|++++.+++..+.+++.. ....... .... ..... ...+.+|+|+....
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~-~~~~~-~~~~~~d~vi~~~~- 222 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQADYLKSLG-ASEVLDREDLLD-ESKKP-LLKARWAGAIDTVG- 222 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcC-CcEEEcchhHHH-HHHHH-hcCCCccEEEECCc-
Confidence 357777776 346666666664 889999999998888886643 2222221 1100 11111 12345898885422
Q ss_pred ccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 110 HWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
...+.++.+.|+ ++|+++.+..
T Consensus 223 -----~~~~~~~~~~l~-~~g~~v~~g~ 244 (325)
T cd05280 223 -----GDVLANLLKQTK-YGGVVASCGN 244 (325)
T ss_pred -----hHHHHHHHHhhc-CCCEEEEEec
Confidence 247888999999 9999987654
No 399
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=83.78 E-value=16 Score=32.32 Aligned_cols=99 Identities=14% Similarity=0.033 Sum_probs=58.5
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCC--ch-hhhhhccCCCCceeeEEE
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTM--SI-TELEQNVATQSSVDLVTI 105 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~D~V~~ 105 (262)
.++.+||=.|+|. |..+..+++. |.+ +++++.++...+.+++..-..++..... .. ..+..+. .+.+|+|+-
T Consensus 182 ~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~--~~~~d~vid 259 (365)
T cd05279 182 TPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMT--DGGVDYAFE 259 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHh--CCCCcEEEE
Confidence 4667777778764 5566666664 664 8899999988888876422122221111 11 1122222 246899985
Q ss_pred ccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
... ....+..+.+.|++++|+++....
T Consensus 260 ~~g-----~~~~~~~~~~~l~~~~G~~v~~g~ 286 (365)
T cd05279 260 VIG-----SADTLKQALDATRLGGGTSVVVGV 286 (365)
T ss_pred CCC-----CHHHHHHHHHHhccCCCEEEEEec
Confidence 422 135677788888646999887543
No 400
>PRK12742 oxidoreductase; Provisional
Probab=83.75 E-value=18 Score=29.32 Aligned_cols=102 Identities=12% Similarity=0.059 Sum_probs=52.7
Q ss_pred CCeEEEEcCccc--H-hHHHHHhhCCeEEEEcC-CHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961 34 RNLAWDVGTRSG--Q-AAASLAQIYQHVIATDT-SPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL 109 (262)
Q Consensus 34 ~~~vlDvGcG~G--~-~~~~l~~~~~~v~~vD~-s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~ 109 (262)
+.++|=.|++.| . ++..+++.|++|+.+.. +++.++...+..++.+...|..+...+....-..+.+|+++.+.+.
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~ag~ 85 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNAGI 85 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECCCC
Confidence 456787777544 2 33445567888887754 4444444332224455555511111122211123568999876544
Q ss_pred ccC------ChhH--------------HHHHHHHhhcCCCeEEEEEe
Q 037961 110 HWF------DLPQ--------------FYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 110 ~~~------d~~~--------------~l~~~~r~Lk~pgG~l~i~~ 136 (262)
... +++. +.+++.+.++ .+|.++...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~g~iv~is 131 (237)
T PRK12742 86 AVFGDALELDADDIDRLFKINIHAPYHASVEAARQMP-EGGRIIIIG 131 (237)
T ss_pred CCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 321 1211 2356667777 788877644
No 401
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=83.72 E-value=19 Score=31.83 Aligned_cols=100 Identities=16% Similarity=0.123 Sum_probs=66.2
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcCCCceEEeCCCC-ch-hhhhhccCCCCceeeEEEc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-Y-QHVIATDTSPKQLKFAIKLPNIRYQLTPTM-SI-TELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~D~V~~~ 106 (262)
+++.+|.-+|||. |..+.+-+.. + .+++++|+++.-++.|+++-...+++..+. .. +.+.++ .++..|.++-
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~--T~gG~d~~~e- 260 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVEL--TDGGADYAFE- 260 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHh--cCCCCCEEEE-
Confidence 5778888899985 6666665553 4 479999999999999998755555544311 01 111222 3445666542
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
-......++.....+. .+|..++.....
T Consensus 261 ----~~G~~~~~~~al~~~~-~~G~~v~iGv~~ 288 (366)
T COG1062 261 ----CVGNVEVMRQALEATH-RGGTSVIIGVAG 288 (366)
T ss_pred ----ccCCHHHHHHHHHHHh-cCCeEEEEecCC
Confidence 1233458899999999 899999866654
No 402
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=83.71 E-value=20 Score=30.35 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=58.4
Q ss_pred CCCCeEEEEcC--cccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVGT--RSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~ 107 (262)
.++..++=.|+ +.|..+..++. .+.+++.++.++...+.++......+...+.... ..+... .....+|+++...
T Consensus 143 ~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~d~vi~~~ 221 (328)
T cd08268 143 RPGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRDALLALGAAHVIVTDEEDLVAEVLRI-TGGKGVDVVFDPV 221 (328)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEecCCccHHHHHHHH-hCCCCceEEEECC
Confidence 46677887886 34555555554 4889999999988877775432112222111001 111111 1234689998643
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
. .....++.+.++ ++|+++.+..
T Consensus 222 ~------~~~~~~~~~~l~-~~g~~v~~g~ 244 (328)
T cd08268 222 G------GPQFAKLADALA-PGGTLVVYGA 244 (328)
T ss_pred c------hHhHHHHHHhhc-cCCEEEEEEe
Confidence 3 145677888999 9999987653
No 403
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=83.58 E-value=21 Score=30.64 Aligned_cols=98 Identities=13% Similarity=0.042 Sum_probs=59.5
Q ss_pred CCCCeEEEEc-C-cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVG-T-RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvG-c-G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~ 107 (262)
.++.+++=.| + +.|..+..+++. |.++++++.++...+.+++..-..++..+.... ..+... .....+|+|+-..
T Consensus 139 ~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~~ 217 (327)
T PRK10754 139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQRAKKAGAWQVINYREENIVERVKEI-TGGKKVRVVYDSV 217 (327)
T ss_pred CCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEEcCCCCcHHHHHHHH-cCCCCeEEEEECC
Confidence 4566766654 3 347777777764 889999999998888776543212222221111 111222 1334689888432
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
. ...+.+..+.|+ ++|+++.+..
T Consensus 218 ~------~~~~~~~~~~l~-~~g~~v~~g~ 240 (327)
T PRK10754 218 G------KDTWEASLDCLQ-RRGLMVSFGN 240 (327)
T ss_pred c------HHHHHHHHHHhc-cCCEEEEEcc
Confidence 2 246677889999 9999997553
No 404
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=83.56 E-value=1.4 Score=36.96 Aligned_cols=51 Identities=25% Similarity=0.247 Sum_probs=38.2
Q ss_pred HHHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHh
Q 037961 22 ELFKLIASKTP--KRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAI 72 (262)
Q Consensus 22 ~~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~ 72 (262)
.+..+|.+.++ +..+++|+=||+|.++..+...+..|+.-|+++..+...+
T Consensus 7 ~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 7 KLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWK 59 (260)
T ss_dssp GGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHH
Confidence 45777888887 5899999999999999998888999999999998877665
No 405
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=83.49 E-value=22 Score=30.36 Aligned_cols=97 Identities=24% Similarity=0.182 Sum_probs=57.9
Q ss_pred CCCCeEEEEcCc-ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCC-C-Cch-hhhhhccCCCCceeeEEEc
Q 037961 32 PKRNLAWDVGTR-SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTP-T-MSI-TELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 32 ~~~~~vlDvGcG-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~-~~~-~~~~~~~~~~~~~D~V~~~ 106 (262)
.++.+|+=.|+| .|..+..+++ .|.++++++.++...+.+++. .+...... . ... ..+... .....+|+++..
T Consensus 159 ~~g~~vli~g~g~~g~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~~ 236 (336)
T cd08276 159 KPGDTVLVQGTGGVSLFALQFAKAAGARVIATSSSDEKLERAKAL-GADHVINYRTTPDWGEEVLKL-TGGRGVDHVVEV 236 (336)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CCCEEEcCCcccCHHHHHHHH-cCCCCCcEEEEC
Confidence 455666555654 3555555555 488999999999888877764 22222111 1 111 111112 133468999854
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.. ...+..+.+.|+ ++|+++....
T Consensus 237 ~~------~~~~~~~~~~l~-~~G~~v~~g~ 260 (336)
T cd08276 237 GG------PGTLAQSIKAVA-PGGVISLIGF 260 (336)
T ss_pred CC------hHHHHHHHHhhc-CCCEEEEEcc
Confidence 21 346788899999 9999987554
No 406
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=83.42 E-value=19 Score=31.10 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=61.8
Q ss_pred CCCCCeEEEEcCc--ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEe-CCCCch-hhhhhccCCCCceeeEEE
Q 037961 31 TPKRNLAWDVGTR--SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQL-TPTMSI-TELEQNVATQSSVDLVTI 105 (262)
Q Consensus 31 ~~~~~~vlDvGcG--~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~D~V~~ 105 (262)
..++.++|=.|+| .|..+..+++. |.+++++..+++..+.+++.. +..+. ...... ..+..+ .+...+|+|+.
T Consensus 163 ~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~~-~~~~~vd~vl~ 240 (341)
T cd08297 163 LKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKLELAKELG-ADAFVDFKKSDDVEAVKEL-TGGGGAHAVVV 240 (341)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcC-CcEEEcCCCccHHHHHHHH-hcCCCCCEEEE
Confidence 3466788877775 57777777764 889999999988877775532 22221 111000 112222 13456999984
Q ss_pred ccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
... ....+.++.+.|+ ++|+++.+..
T Consensus 241 ~~~-----~~~~~~~~~~~l~-~~g~~v~~g~ 266 (341)
T cd08297 241 TAV-----SAAAYEQALDYLR-PGGTLVCVGL 266 (341)
T ss_pred cCC-----chHHHHHHHHHhh-cCCEEEEecC
Confidence 211 1356788999999 9999998653
No 407
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=83.38 E-value=4.1 Score=34.83 Aligned_cols=59 Identities=15% Similarity=0.242 Sum_probs=49.9
Q ss_pred hCCCChHHHHHHHHhh-CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHhc
Q 037961 15 ARPNYPKELFKLIASK-TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAIK 73 (262)
Q Consensus 15 ~rp~yp~~~~~~l~~~-~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~ 73 (262)
+-...|.+++..+... ..++..|||.=+|+|.........+..++|+|+++..++.+.+
T Consensus 203 hp~~~P~~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~ 262 (302)
T COG0863 203 HPAQKPLALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALK 262 (302)
T ss_pred CCCCChHHHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHH
Confidence 3345677887776654 4688999999999999999998899999999999999998875
No 408
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=83.29 E-value=3.2 Score=31.53 Aligned_cols=99 Identities=24% Similarity=0.257 Sum_probs=56.6
Q ss_pred EEEEcCcc-cH-hHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCC---CCchh-hhhhccCCCCceeeEEEccccc
Q 037961 37 AWDVGTRS-GQ-AAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTP---TMSIT-ELEQNVATQSSVDLVTIASALH 110 (262)
Q Consensus 37 vlDvGcG~-G~-~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~D~V~~~~~~~ 110 (262)
|+=+|+|. |. ++..|++.+.+|+.++-++ .++..++. .+.+...+ ..... ...........+|+|+.. .-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~--vK 76 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQ-GLTITGPDGDETVQPPIVISAPSADAGPYDLVIVA--VK 76 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHH-CEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE---SS
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhhe-eEEEEecccceecccccccCcchhccCCCcEEEEE--ec
Confidence 34567775 43 3444556799999999998 66554431 12211111 00000 000001135679999864 33
Q ss_pred cCChhHHHHHHHHhhcCCCeEEEEEecCCC
Q 037961 111 WFDLPQFYKQVKWVLKKPSGVIAAWTYTMP 140 (262)
Q Consensus 111 ~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~ 140 (262)
..+.+.+++.+.+.+. |+..++++..+..
T Consensus 77 a~~~~~~l~~l~~~~~-~~t~iv~~qNG~g 105 (151)
T PF02558_consen 77 AYQLEQALQSLKPYLD-PNTTIVSLQNGMG 105 (151)
T ss_dssp GGGHHHHHHHHCTGEE-TTEEEEEESSSSS
T ss_pred ccchHHHHHHHhhccC-CCcEEEEEeCCCC
Confidence 3466779999999999 8988777665543
No 409
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=83.21 E-value=0.83 Score=39.98 Aligned_cols=42 Identities=19% Similarity=0.191 Sum_probs=37.5
Q ss_pred CCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHh
Q 037961 31 TPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAI 72 (262)
Q Consensus 31 ~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~ 72 (262)
.+++..|+|--.|||.+....+..|+-|+|.|++=.|+...|
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragr 247 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGR 247 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcceeeccccchheeeccc
Confidence 368999999999999999999999999999999988887543
No 410
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=83.11 E-value=17 Score=31.09 Aligned_cols=98 Identities=11% Similarity=0.068 Sum_probs=60.0
Q ss_pred CCCCCeEEEEcC-c-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCC-CCch-hhhhhccCCCCceeeEEE
Q 037961 31 TPKRNLAWDVGT-R-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSI-TELEQNVATQSSVDLVTI 105 (262)
Q Consensus 31 ~~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~D~V~~ 105 (262)
..++..||=.|+ | .|..+..+++. |.+++.+.-+++..+.+++. ++...... .... ..+..+ .....+|+|+.
T Consensus 137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~i~~~-~~~~~~d~v~d 214 (324)
T cd08292 137 VKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRAL-GIGPVVSTEQPGWQDKVREA-AGGAPISVALD 214 (324)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhc-CCCEEEcCCCchHHHHHHHH-hCCCCCcEEEE
Confidence 356777777775 3 57777777764 88888887777777776654 33322211 1111 112222 13346999985
Q ss_pred ccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
... . ..+.++.+.|+ ++|+++.+..
T Consensus 215 ~~g----~--~~~~~~~~~l~-~~g~~v~~g~ 239 (324)
T cd08292 215 SVG----G--KLAGELLSLLG-EGGTLVSFGS 239 (324)
T ss_pred CCC----C--hhHHHHHHhhc-CCcEEEEEec
Confidence 422 1 35678899999 9999987653
No 411
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=82.83 E-value=9.2 Score=29.83 Aligned_cols=110 Identities=15% Similarity=0.166 Sum_probs=54.5
Q ss_pred hHHHHHHHHhhCCCChHHHHHHHHhhCCCCCeEEEEcCcccHhHH-HHHhhCCe--EEEEcCCHHHHHHHhcCCC--ceE
Q 037961 5 FIKQANLYAVARPNYPKELFKLIASKTPKRNLAWDVGTRSGQAAA-SLAQIYQH--VIATDTSPKQLKFAIKLPN--IRY 79 (262)
Q Consensus 5 F~~~a~~Y~~~rp~yp~~~~~~l~~~~~~~~~vlDvGcG~G~~~~-~l~~~~~~--v~~vD~s~~~~~~a~~~~~--~~~ 79 (262)
|.+-++..++.| .++.+.|......+.+|.=.|+|+...+. ..+....+ ...+|.+|. .+.+-.|+ +.+
T Consensus 43 y~~f~~~~~~~~----~~l~~~L~~~~~~gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~--K~G~~~PGt~ipI 116 (160)
T PF08484_consen 43 YENFAKRVEQSK----AELREFLEKLKAEGKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPL--KQGKYLPGTHIPI 116 (160)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHTT--EEEE---SHHHHHHHHHT--TTTS--EEES-GG--GTTEE-TTT--EE
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHcCCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChh--hcCcccCCCCCeE
Confidence 334444444443 45555555554577889999999976654 44444333 347788755 11122243 444
Q ss_pred EeCCCCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 80 QLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
+..+ .+ .....|.|+. +.|-=.+..++++...++ .||.|++
T Consensus 117 ~~p~--------~l--~~~~pd~viv---law~y~~EI~~~~~~~~~-~gg~fi~ 157 (160)
T PF08484_consen 117 VSPE--------EL--KERKPDYVIV---LAWNYKDEIIEKLREYLE-RGGKFIV 157 (160)
T ss_dssp EEGG--------G----SS--SEEEE---S-GGGHHHHHHHTHHHHH-TT-EEEE
T ss_pred CCHH--------HH--hhCCCCEEEE---cChhhHHHHHHHHHHHHh-cCCEEEE
Confidence 4322 11 3445688775 334445778888999999 8999987
No 412
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=82.50 E-value=19 Score=31.24 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=58.5
Q ss_pred CCCCCeEEEEcC-c-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceeeEEEc
Q 037961 31 TPKRNLAWDVGT-R-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 31 ~~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~V~~~ 106 (262)
..++.+||=.|+ | .|..+..+++. ++++++++.+. ..+.+++. ++..+... ...... ... .....+|+|+..
T Consensus 175 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~-~~~~~~~~-g~~~~~~~~~~~~~~-~~~-~~~~~~d~vi~~ 250 (350)
T cd08274 175 VGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA-KEEAVRAL-GADTVILRDAPLLAD-AKA-LGGEPVDVVADV 250 (350)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch-hhHHHHhc-CCeEEEeCCCccHHH-HHh-hCCCCCcEEEec
Confidence 356788888887 3 46676666664 88899888664 66666654 23332222 111111 111 134569999854
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
.. ...+..+.+.|+ ++|+++.+.
T Consensus 251 ~g------~~~~~~~~~~l~-~~G~~v~~g 273 (350)
T cd08274 251 VG------GPLFPDLLRLLR-PGGRYVTAG 273 (350)
T ss_pred CC------HHHHHHHHHHhc-cCCEEEEec
Confidence 33 246788999999 999998654
No 413
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=82.07 E-value=1.8 Score=38.75 Aligned_cols=94 Identities=17% Similarity=0.178 Sum_probs=62.7
Q ss_pred CCCeEEEEcCcccHhHHHHHhh---CCeEEEEcCCHHHHHHHhcC-------C-CceEEeCCCCchhhhhhcc-CCCCce
Q 037961 33 KRNLAWDVGTRSGQAAASLAQI---YQHVIATDTSPKQLKFAIKL-------P-NIRYQLTPTMSITELEQNV-ATQSSV 100 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-------~-~~~~~~~~~~~~~~~~~~~-~~~~~~ 100 (262)
..-++||.=+|+|.=+...+.. ..+|++-|+|++.++..+++ . .+++...| +..+- .....|
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~D------An~ll~~~~~~f 122 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMD------ANVLLYSRQERF 122 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-------HHHHHCHSTT-E
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhh------HHHHhhhccccC
Confidence 3468999999999888877765 35899999999999988753 2 24444433 43321 246779
Q ss_pred eeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 101 DLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 101 D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
|+|=.. -+ .+..++..+.+.++ .||.|.+...
T Consensus 123 D~IDlD----PfGSp~pfldsA~~~v~-~gGll~vTaT 155 (377)
T PF02005_consen 123 DVIDLD----PFGSPAPFLDSALQAVK-DGGLLCVTAT 155 (377)
T ss_dssp EEEEE------SS--HHHHHHHHHHEE-EEEEEEEEE-
T ss_pred CEEEeC----CCCCccHhHHHHHHHhh-cCCEEEEecc
Confidence 998632 12 46679999999999 8999998443
No 414
>PRK08177 short chain dehydrogenase; Provisional
Probab=82.01 E-value=16 Score=29.57 Aligned_cols=74 Identities=20% Similarity=0.199 Sum_probs=42.4
Q ss_pred eEEEEcCcccH---hHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhcc--CCCCceeeEEEcccc
Q 037961 36 LAWDVGTRSGQ---AAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNV--ATQSSVDLVTIASAL 109 (262)
Q Consensus 36 ~vlDvGcG~G~---~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~V~~~~~~ 109 (262)
++|=.|+..|. ++..|++.|.+|++++.++.-.+..+...++.+...|.-+..++..+- +..+.+|+|+.+.+.
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag~ 81 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAGI 81 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCcc
Confidence 46666664432 455566678999999988766655554455666666611111121111 233578999876543
No 415
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=81.60 E-value=23 Score=30.37 Aligned_cols=96 Identities=13% Similarity=0.103 Sum_probs=60.3
Q ss_pred CCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhc-CCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961 32 PKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIK-LPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~ 106 (262)
.++..||=.|+ +.|..+..+++. |.++++++.++...+.+++ ..-..++....... ..+..+. .+.+|+|+..
T Consensus 144 ~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~~~--~~~~d~vi~~ 221 (329)
T cd05288 144 KPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCRWLVEELGFDAAINYKTPDLAEALKEAA--PDGIDVYFDN 221 (329)
T ss_pred CCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhhcCCceEEecCChhHHHHHHHhc--cCCceEEEEc
Confidence 46677777774 347777777664 8899999999988887766 32112222221001 1122222 2569998854
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
.. ...+..+.+.|+ ++|+++.+.
T Consensus 222 ~g------~~~~~~~~~~l~-~~G~~v~~g 244 (329)
T cd05288 222 VG------GEILDAALTLLN-KGGRIALCG 244 (329)
T ss_pred ch------HHHHHHHHHhcC-CCceEEEEe
Confidence 22 247888899999 999988754
No 416
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=81.52 E-value=30 Score=29.47 Aligned_cols=97 Identities=11% Similarity=0.106 Sum_probs=60.3
Q ss_pred CCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceE-EeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961 32 PKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRY-QLTPTMSI-TELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~D~V~~~ 106 (262)
.++..||=.|+ +.|..+..+++. |.++++++.++...+.+++.. +.. +....... ..+... .....+|+|+..
T Consensus 141 ~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~ 218 (324)
T cd08244 141 TPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTALVRALG-ADVAVDYTRPDWPDQVREA-LGGGGVTVVLDG 218 (324)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC-CCEEEecCCccHHHHHHHH-cCCCCceEEEEC
Confidence 46667777774 346777777764 889999999998888876542 222 22111111 111112 133469999864
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.. .....++.+.|+ ++|+++.+..
T Consensus 219 ~g------~~~~~~~~~~l~-~~g~~v~~g~ 242 (324)
T cd08244 219 VG------GAIGRAALALLA-PGGRFLTYGW 242 (324)
T ss_pred CC------hHhHHHHHHHhc-cCcEEEEEec
Confidence 32 224588899999 9999987553
No 417
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=81.50 E-value=6.6 Score=36.62 Aligned_cols=112 Identities=14% Similarity=0.218 Sum_probs=68.0
Q ss_pred hHHHHHHHHhhCC----CCCeEEEEcCcccHhHHHHHhh---C---CeEEEEcCCHHHHHHHhcC---CC-----ceEEe
Q 037961 20 PKELFKLIASKTP----KRNLAWDVGTRSGQAAASLAQI---Y---QHVIATDTSPKQLKFAIKL---PN-----IRYQL 81 (262)
Q Consensus 20 p~~~~~~l~~~~~----~~~~vlDvGcG~G~~~~~l~~~---~---~~v~~vD~s~~~~~~a~~~---~~-----~~~~~ 81 (262)
|.++.+.+..... +...+.|..||+|.+....... + ..++|-+..+.+...++.+ .. .....
T Consensus 200 p~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~ 279 (501)
T TIGR00497 200 PQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIIN 279 (501)
T ss_pred cHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCccc
Confidence 6777777655432 4467899999999988654431 2 3589999999999888753 11 11222
Q ss_pred CCCCchhhhhhccCCCCceeeEEEcccc--cc-------------------CC-----hhHHHHHHHHhhcCCCeEEEEE
Q 037961 82 TPTMSITELEQNVATQSSVDLVTIASAL--HW-------------------FD-----LPQFYKQVKWVLKKPSGVIAAW 135 (262)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~D~V~~~~~~--~~-------------------~d-----~~~~l~~~~r~Lk~pgG~l~i~ 135 (262)
++.+...+. ....+||.|+++..+ .| +. --.++..+..+|+ +||+.++.
T Consensus 280 ~dtl~~~d~----~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~-~gG~~aiI 354 (501)
T TIGR00497 280 ADTLTTKEW----ENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLG-QEGTAAIV 354 (501)
T ss_pred CCcCCCccc----cccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcC-CCCeEEEE
Confidence 221110010 123458888775532 12 10 1127888999999 99987764
Q ss_pred e
Q 037961 136 T 136 (262)
Q Consensus 136 ~ 136 (262)
.
T Consensus 355 ~ 355 (501)
T TIGR00497 355 C 355 (501)
T ss_pred e
Confidence 3
No 418
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=81.28 E-value=13 Score=31.77 Aligned_cols=98 Identities=18% Similarity=0.168 Sum_probs=56.9
Q ss_pred eEEEEcCcc-c-HhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCCCceeeEEEccccccC
Q 037961 36 LAWDVGTRS-G-QAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQSSVDLVTIASALHWF 112 (262)
Q Consensus 36 ~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~D~V~~~~~~~~~ 112 (262)
.|+=+|+|. | .++..|++.|.+|+.++.+++.++..++. ++....++ ........+.. +...+|+|+...-- .
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~d~vila~k~--~ 77 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN-GLRLEDGEITVPVLAADDPA-ELGPQDLVILAVKA--Y 77 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc-CCcccCCceeecccCCCChh-HcCCCCEEEEeccc--c
Confidence 467788886 3 35555667789999999988877766543 22221111 00000001110 11568999865432 3
Q ss_pred ChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 113 DLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 113 d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
+.+.+++.+...+. ++..++....+
T Consensus 78 ~~~~~~~~l~~~l~-~~~~iv~~~nG 102 (304)
T PRK06522 78 QLPAALPSLAPLLG-PDTPVLFLQNG 102 (304)
T ss_pred cHHHHHHHHhhhcC-CCCEEEEecCC
Confidence 56778888888888 77666654433
No 419
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=81.25 E-value=19 Score=32.64 Aligned_cols=111 Identities=16% Similarity=0.049 Sum_probs=58.6
Q ss_pred CeEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCC-C-C-----chhhhhhccCCCCceeeEEE
Q 037961 35 NLAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTP-T-M-----SITELEQNVATQSSVDLVTI 105 (262)
Q Consensus 35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~-~-----~~~~~~~~~~~~~~~D~V~~ 105 (262)
.+|.=+|.|. +..+..|++.|.+|+++|.++.-++..+.- .+.+.... . + ..+...... .....|+|+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g-~~~~~e~~l~~~l~~~~~~g~l~~~~-~~~~aDvvii 81 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRG-EIHIVEPDLDMVVKTAVEGGYLRATT-TPEPADAFLI 81 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCC-CCCcCCCCHHHHHHHHhhcCceeeec-ccccCCEEEE
Confidence 3466678875 344555677899999999999988875431 11111111 0 0 000000000 1124688876
Q ss_pred ccccc-----cC---ChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHH
Q 037961 106 ASALH-----WF---DLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGA 148 (262)
Q Consensus 106 ~~~~~-----~~---d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~ 148 (262)
+-.-. -. ....+++.+.+.|+ +|-.++..+...+...+.+..
T Consensus 82 ~vptp~~~~~~~dl~~v~~~~~~i~~~l~-~g~iVI~~STv~pgtt~~~~~ 131 (415)
T PRK11064 82 AVPTPFKGDHEPDLTYVEAAAKSIAPVLK-KGDLVILESTSPVGATEQMAE 131 (415)
T ss_pred EcCCCCCCCCCcChHHHHHHHHHHHHhCC-CCCEEEEeCCCCCCHHHHHHH
Confidence 54432 01 23346678888898 776666544334433344433
No 420
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=81.16 E-value=8 Score=33.07 Aligned_cols=38 Identities=21% Similarity=0.024 Sum_probs=29.1
Q ss_pred eEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhc
Q 037961 36 LAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIK 73 (262)
Q Consensus 36 ~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~ 73 (262)
+|.=||+|. +..+..++..|.+|+..|.+++.++.+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~ 42 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQ 42 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence 466788885 34555667779999999999999987653
No 421
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=81.02 E-value=4.7 Score=36.15 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=33.4
Q ss_pred hCCCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHh
Q 037961 30 KTPKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAI 72 (262)
Q Consensus 30 ~~~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~ 72 (262)
.+.++.+||-|..|.....-.+...-++|++||+||.++...+
T Consensus 32 ~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 32 NIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLE 74 (380)
T ss_pred CCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHH
Confidence 4568889999976666655556666789999999999988654
No 422
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=80.96 E-value=23 Score=31.51 Aligned_cols=99 Identities=12% Similarity=0.074 Sum_probs=60.6
Q ss_pred CCCCCeEEEEcC-c-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCc---------------------
Q 037961 31 TPKRNLAWDVGT-R-SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMS--------------------- 86 (262)
Q Consensus 31 ~~~~~~vlDvGc-G-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~--------------------- 86 (262)
..++.+||=.|+ | .|..+..+++. |.++++++.++...+.+++.....++..+..+
T Consensus 191 ~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (393)
T cd08246 191 VKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEAR 270 (393)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccc
Confidence 346678888887 3 46677767664 88999999999999888764211112111000
Q ss_pred -h-hhhhhccCCCC-ceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 87 -I-TELEQNVATQS-SVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 87 -~-~~~~~~~~~~~-~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
+ ..+..+. ... .+|+|+.... ...+.+..+.|+ ++|+++.+..
T Consensus 271 ~~~~~v~~l~-~~~~g~d~vid~~g------~~~~~~~~~~l~-~~G~~v~~g~ 316 (393)
T cd08246 271 RFGKAIWDIL-GGREDPDIVFEHPG------RATFPTSVFVCD-RGGMVVICAG 316 (393)
T ss_pred hHHHHHHHHh-CCCCCCeEEEECCc------hHhHHHHHHHhc-cCCEEEEEcc
Confidence 0 0111111 222 5899885422 235778889999 9999997643
No 423
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=80.47 E-value=15 Score=35.05 Aligned_cols=92 Identities=13% Similarity=0.048 Sum_probs=56.4
Q ss_pred CeEEEEcCcc-cHh-HHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC
Q 037961 35 NLAWDVGTRS-GQA-AASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF 112 (262)
Q Consensus 35 ~~vlDvGcG~-G~~-~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~ 112 (262)
++|+=+|+|. |+. ++.|.+.+.+++.+|.+++.++.+++. +.....+|.-+.+-.++.+.. ..|.|++...
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-g~~v~~GDat~~~~L~~agi~--~A~~vv~~~~---- 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY-GYKVYYGDATQLELLRAAGAE--KAEAIVITCN---- 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-CCeEEEeeCCCHHHHHhcCCc--cCCEEEEEeC----
Confidence 4566666664 433 233445688999999999999999874 677888872222333444433 4677776422
Q ss_pred ChhH--HHHHHHHhhcCCCeEEEE
Q 037961 113 DLPQ--FYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 113 d~~~--~l~~~~r~Lk~pgG~l~i 134 (262)
|.+. .+....|-+. |...++.
T Consensus 474 d~~~n~~i~~~~r~~~-p~~~Iia 496 (601)
T PRK03659 474 EPEDTMKIVELCQQHF-PHLHILA 496 (601)
T ss_pred CHHHHHHHHHHHHHHC-CCCeEEE
Confidence 3333 3334555667 7777766
No 424
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=80.24 E-value=7.4 Score=34.48 Aligned_cols=40 Identities=13% Similarity=0.089 Sum_probs=32.3
Q ss_pred CCCeEEEEcCcccHhHHHHHhh----------CCeEEEEcCCHHHHHHHh
Q 037961 33 KRNLAWDVGTRSGQAAASLAQI----------YQHVIATDTSPKQLKFAI 72 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~~----------~~~v~~vD~s~~~~~~a~ 72 (262)
....++|+|+|+|.+...+++. ..++.-|++|+...+.-+
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk 126 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQK 126 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHH
Confidence 4567899999999999887652 358999999999877544
No 425
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=80.13 E-value=9.3 Score=32.73 Aligned_cols=38 Identities=26% Similarity=0.173 Sum_probs=29.3
Q ss_pred CeEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHh
Q 037961 35 NLAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAI 72 (262)
Q Consensus 35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~ 72 (262)
..|.=+|+|. +..+..++..|.+|+.+|.+++.++.++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 43 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAM 43 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence 3577789996 3455566778999999999999987654
No 426
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.06 E-value=11 Score=32.18 Aligned_cols=38 Identities=24% Similarity=-0.011 Sum_probs=28.5
Q ss_pred CeEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHh
Q 037961 35 NLAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAI 72 (262)
Q Consensus 35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~ 72 (262)
..|.=+|+|. +..+..++..|.+|+.+|++++.++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~ 43 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAK 43 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence 3567789886 2344556667899999999999887765
No 427
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=79.81 E-value=4.4 Score=36.17 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=68.9
Q ss_pred HHHHhhC-CCChHHHHHHHHhh-----CCCCCeEEEEcCcccHhHHHHHhhC--CeEEEEcCCHHHHHHHhc--------
Q 037961 10 NLYAVAR-PNYPKELFKLIASK-----TPKRNLAWDVGTRSGQAAASLAQIY--QHVIATDTSPKQLKFAIK-------- 73 (262)
Q Consensus 10 ~~Y~~~r-p~yp~~~~~~l~~~-----~~~~~~vlDvGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~-------- 73 (262)
++|..+- +.|-+...+.+... +++.+...|+|.|.|+....++..+ ..-+|+++...--+.+..
T Consensus 163 ~hYk~~ss~~YGE~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~ 242 (419)
T KOG3924|consen 163 QHYKSFSSETYGETQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKL 242 (419)
T ss_pred HhhccccccchhhhhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHH
Confidence 3555432 56655554444432 3688889999999999999888763 355676665544443321
Q ss_pred -------CCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCChhH--HHHHHHHhhcCCCeEEEE
Q 037961 74 -------LPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQ--FYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 74 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~--~l~~~~r~Lk~pgG~l~i 134 (262)
...++.+.++..+......+ ....++|++++.. +|++- -+.++..-++ +|-.++-
T Consensus 243 ~k~fGk~~~~~~~i~gsf~~~~~v~eI---~~eatvi~vNN~~--Fdp~L~lr~~eil~~ck-~gtrIiS 306 (419)
T KOG3924|consen 243 MKHFGKKPNKIETIHGSFLDPKRVTEI---QTEATVIFVNNVA--FDPELKLRSKEILQKCK-DGTRIIS 306 (419)
T ss_pred HHHhCCCcCceeecccccCCHHHHHHH---hhcceEEEEeccc--CCHHHHHhhHHHHhhCC-CcceEec
Confidence 13455555542221111112 3457888887775 34444 4457777777 6666553
No 428
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=79.68 E-value=4.8 Score=34.06 Aligned_cols=45 Identities=13% Similarity=0.187 Sum_probs=33.3
Q ss_pred HHHHHHHhh--CCCCCeEEEEcCcccHhHHHHHhh-------CCeEEEEcCCHH
Q 037961 22 ELFKLIASK--TPKRNLAWDVGTRSGQAAASLAQI-------YQHVIATDTSPK 66 (262)
Q Consensus 22 ~~~~~l~~~--~~~~~~vlDvGcG~G~~~~~l~~~-------~~~v~~vD~s~~ 66 (262)
.++..|... +.+...++|.|||.|.++..++.. ...++.||-...
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~ 58 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN 58 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence 345555443 257788999999999999999864 257899998654
No 429
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.57 E-value=22 Score=28.79 Aligned_cols=103 Identities=16% Similarity=0.038 Sum_probs=57.4
Q ss_pred CCeEEEEcCccc--H-hHHHHHhhCCeEEEEcCCHHHHHHHh----cCCCceEEeCCCCchhhhhh----ccCCCCceee
Q 037961 34 RNLAWDVGTRSG--Q-AAASLAQIYQHVIATDTSPKQLKFAI----KLPNIRYQLTPTMSITELEQ----NVATQSSVDL 102 (262)
Q Consensus 34 ~~~vlDvGcG~G--~-~~~~l~~~~~~v~~vD~s~~~~~~a~----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~D~ 102 (262)
+.+||-.|++.| . +++.+++.|.+|++++-++.-++... ...++.++..|.......+. ..-.-+.+|.
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~ 84 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAIDG 84 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCCE
Confidence 467888888643 2 23344556899999999988665442 12356666666111111111 1101245788
Q ss_pred EEEccccccCC------------------hhHHHHHHHHhhcCCCeEEEEEec
Q 037961 103 VTIASALHWFD------------------LPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 103 V~~~~~~~~~d------------------~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
|+.+.+..+.+ +-.+++.+.+.++ ++|.+++...
T Consensus 85 ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~~iv~~ss 136 (238)
T PRK05786 85 LVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLK-EGSSIVLVSS 136 (238)
T ss_pred EEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHh-cCCEEEEEec
Confidence 87665432211 1123566677778 7888877543
No 430
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=79.51 E-value=12 Score=32.33 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=53.1
Q ss_pred CeEEEEcCcc--cHhHHHHHhhC--CeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961 35 NLAWDVGTRS--GQAAASLAQIY--QHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH 110 (262)
Q Consensus 35 ~~vlDvGcG~--G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~ 110 (262)
.+|.=||+|. +.++..+...+ .+|+++|.+++.++.+++..-...... +.+.. -...|+|+.+-...
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~------~~~~~---~~~aDvViiavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTT------SAAEA---VKGADLVILCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecC------CHHHH---hcCCCEEEECCCHH
Confidence 4577888886 34455565566 489999999998887765421111111 11111 13479998765432
Q ss_pred cCChhHHHHHHHHhhcCCCeEEEE
Q 037961 111 WFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 111 ~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
- ...+++++...++ +|..+..
T Consensus 78 ~--~~~v~~~l~~~l~-~~~iv~d 98 (307)
T PRK07502 78 A--SGAVAAEIAPHLK-PGAIVTD 98 (307)
T ss_pred H--HHHHHHHHHhhCC-CCCEEEe
Confidence 2 2446677777888 8876654
No 431
>PLN02702 L-idonate 5-dehydrogenase
Probab=79.29 E-value=32 Score=30.17 Aligned_cols=98 Identities=12% Similarity=0.112 Sum_probs=58.6
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEe--C-CCCch-hhhhhcc-CCCCceeeE
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQL--T-PTMSI-TELEQNV-ATQSSVDLV 103 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~--~-~~~~~-~~~~~~~-~~~~~~D~V 103 (262)
.++..||=.|+|. |..+..+++. |. .++++|.++.-.+.+++.. +.... . ..... ..+..+. ...+.+|+|
T Consensus 180 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 258 (364)
T PLN02702 180 GPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLG-ADEIVLVSTNIEDVESEVEEIQKAMGGGIDVS 258 (364)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhC-CCEEEecCcccccHHHHHHHHhhhcCCCCCEE
Confidence 4666777778753 6666666664 65 4889999988888777642 22111 0 00001 1111110 123468988
Q ss_pred EEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 104 TIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 104 ~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
+-... ....+.++.+.|+ ++|+++.+.
T Consensus 259 id~~g-----~~~~~~~~~~~l~-~~G~~v~~g 285 (364)
T PLN02702 259 FDCVG-----FNKTMSTALEATR-AGGKVCLVG 285 (364)
T ss_pred EECCC-----CHHHHHHHHHHHh-cCCEEEEEc
Confidence 85322 1357899999999 999988755
No 432
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=79.12 E-value=23 Score=30.15 Aligned_cols=97 Identities=12% Similarity=0.128 Sum_probs=58.8
Q ss_pred CCCCeEEEEcCc--ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceE-EeCCCCc-hhhhhhccCCCCceeeEEEc
Q 037961 32 PKRNLAWDVGTR--SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRY-QLTPTMS-ITELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 32 ~~~~~vlDvGcG--~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~D~V~~~ 106 (262)
.++.+||=.|++ .|..+..+++. |.+++++..++...+.+++. ++.. ....... ...+... .....+|+|+..
T Consensus 137 ~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~d~vl~~ 214 (323)
T cd05282 137 PPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQVEELKAL-GADEVIDSSPEDLAQRVKEA-TGGAGARLALDA 214 (323)
T ss_pred CCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHHHHHHhc-CCCEEecccchhHHHHHHHH-hcCCCceEEEEC
Confidence 466777777763 57777777764 88999988888887777654 2221 1111100 0112222 123468999864
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.. ......+.+.|+ ++|+++....
T Consensus 215 ~g------~~~~~~~~~~l~-~~g~~v~~g~ 238 (323)
T cd05282 215 VG------GESATRLARSLR-PGGTLVNYGL 238 (323)
T ss_pred CC------CHHHHHHHHhhC-CCCEEEEEcc
Confidence 33 123457788999 9999886543
No 433
>PLN02494 adenosylhomocysteinase
Probab=79.11 E-value=11 Score=34.79 Aligned_cols=104 Identities=14% Similarity=0.083 Sum_probs=62.0
Q ss_pred HHHHHHHHhhC---CCCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccC
Q 037961 21 KELFKLIASKT---PKRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVA 95 (262)
Q Consensus 21 ~~~~~~l~~~~---~~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 95 (262)
+..++-|.... -.+.+|+=+|+|. |......+. .|.+|+++|.++.-...+... +..+. + ..++ +
T Consensus 238 qS~~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~-G~~vv--~---leEa--l-- 307 (477)
T PLN02494 238 HSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALME-GYQVL--T---LEDV--V-- 307 (477)
T ss_pred ccHHHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhc-CCeec--c---HHHH--H--
Confidence 44455555443 2578899999996 544444443 588999999998754444432 22222 1 1111 1
Q ss_pred CCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEecCCCc
Q 037961 96 TQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTYTMPE 141 (262)
Q Consensus 96 ~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~ 141 (262)
...|+|+....- ...+..+..+.|| +||+|+-.......
T Consensus 308 --~~ADVVI~tTGt----~~vI~~e~L~~MK-~GAiLiNvGr~~~e 346 (477)
T PLN02494 308 --SEADIFVTTTGN----KDIIMVDHMRKMK-NNAIVCNIGHFDNE 346 (477)
T ss_pred --hhCCEEEECCCC----ccchHHHHHhcCC-CCCEEEEcCCCCCc
Confidence 246999863321 1223477888999 99999986654333
No 434
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=79.04 E-value=34 Score=29.59 Aligned_cols=99 Identities=19% Similarity=0.144 Sum_probs=58.1
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~ 107 (262)
.++.+||=.|+|. |..+..+++. |. ++++++.++.-...+++.. +..+..+.... ..+..+ .+...+|+|+-..
T Consensus 166 ~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~l~~~-~~~~~~dvvid~~ 243 (344)
T cd08284 166 RPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALG-AEPINFEDAEPVERVREA-TEGRGADVVLEAV 243 (344)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhC-CeEEecCCcCHHHHHHHH-hCCCCCCEEEECC
Confidence 4566776667653 4455555554 64 7999988887777766542 22222221000 112222 1335689988532
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
. -...+.++.+.|+ ++|+++.+...
T Consensus 244 ~-----~~~~~~~~~~~l~-~~g~~v~~g~~ 268 (344)
T cd08284 244 G-----GAAALDLAFDLVR-PGGVISSVGVH 268 (344)
T ss_pred C-----CHHHHHHHHHhcc-cCCEEEEECcC
Confidence 2 1357888999999 99998876543
No 435
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=78.78 E-value=28 Score=31.38 Aligned_cols=37 Identities=22% Similarity=0.190 Sum_probs=25.7
Q ss_pred EEEEcCcc-cHhHHHHHhhCCeEEEEcCCHHHHHHHhc
Q 037961 37 AWDVGTRS-GQAAASLAQIYQHVIATDTSPKQLKFAIK 73 (262)
Q Consensus 37 vlDvGcG~-G~~~~~l~~~~~~v~~vD~s~~~~~~a~~ 73 (262)
|-=+|.|. |..+..+...|.+|+++|++++-++.+++
T Consensus 3 I~VIGlGyvGl~~A~~lA~G~~VigvD~d~~kv~~l~~ 40 (388)
T PRK15057 3 ITISGTGYVGLSNGLLIAQNHEVVALDILPSRVAMLND 40 (388)
T ss_pred EEEECCCHHHHHHHHHHHhCCcEEEEECCHHHHHHHHc
Confidence 44567774 43333333358899999999999998875
No 436
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=78.54 E-value=31 Score=30.00 Aligned_cols=111 Identities=15% Similarity=0.144 Sum_probs=64.6
Q ss_pred eEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCC-Cch-hhhhhccCCCCceeeEEEcccccc
Q 037961 36 LAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPT-MSI-TELEQNVATQSSVDLVTIASALHW 111 (262)
Q Consensus 36 ~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~D~V~~~~~~~~ 111 (262)
+|+=+|||. |.++..|++.+..|+.+--++. ++..++. ++....... ... ......+...+.+|+|+... --
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~-GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~v--Ka 77 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKK-GLRIEDEGGNFTTPVVAATDAEALGPADLVIVTV--KA 77 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhC-CeEEecCCCccccccccccChhhcCCCCEEEEEe--cc
Confidence 567789996 5667778888866666666655 6666653 333322211 000 00111112334799998542 22
Q ss_pred CChhHHHHHHHHhhcCCCeEEEEEecCCCcccHHHHHhhcc
Q 037961 112 FDLPQFYKQVKWVLKKPSGVIAAWTYTMPEINESVGAVFKP 152 (262)
Q Consensus 112 ~d~~~~l~~~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~~~ 152 (262)
.+.+.+++.+...++ +...+++...+-+.. +.+++.+.+
T Consensus 78 ~q~~~al~~l~~~~~-~~t~vl~lqNG~g~~-e~l~~~~~~ 116 (307)
T COG1893 78 YQLEEALPSLAPLLG-PNTVVLFLQNGLGHE-EELRKILPK 116 (307)
T ss_pred ccHHHHHHHhhhcCC-CCcEEEEEeCCCcHH-HHHHHhCCc
Confidence 367889999999999 888777655554443 345555444
No 437
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.53 E-value=18 Score=31.68 Aligned_cols=97 Identities=20% Similarity=0.130 Sum_probs=58.9
Q ss_pred CCCCeEEEEcCc-ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhc-CCCceEEeCC-C-CchhhhhhccCCCCceeeEEEc
Q 037961 32 PKRNLAWDVGTR-SGQAAASLAQI-YQHVIATDTSPKQLKFAIK-LPNIRYQLTP-T-MSITELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 32 ~~~~~vlDvGcG-~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~D~V~~~ 106 (262)
.++..+-=+|.| -|..+..+++. |.+|+++|-+..--+.+-+ +-.-.|+... + -...++.. ..++-.|-|.+.
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~--~~dg~~~~v~~~ 257 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMK--TTDGGIDTVSNL 257 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHH--hhcCcceeeeec
Confidence 467776666654 69999999886 8999999999755555544 3222333221 1 00011111 123334444422
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
.+..+..+.++|| ++|++++....
T Consensus 258 -------a~~~~~~~~~~lk-~~Gt~V~vg~p 281 (360)
T KOG0023|consen 258 -------AEHALEPLLGLLK-VNGTLVLVGLP 281 (360)
T ss_pred -------cccchHHHHHHhh-cCCEEEEEeCc
Confidence 3456788899999 99999986654
No 438
>PRK08265 short chain dehydrogenase; Provisional
Probab=78.03 E-value=18 Score=30.11 Aligned_cols=76 Identities=18% Similarity=0.128 Sum_probs=43.0
Q ss_pred CCeEEEEcCccc---HhHHHHHhhCCeEEEEcCCHHHHHHHhc-C-CCceEEeCCCCchhhhhh----ccCCCCceeeEE
Q 037961 34 RNLAWDVGTRSG---QAAASLAQIYQHVIATDTSPKQLKFAIK-L-PNIRYQLTPTMSITELEQ----NVATQSSVDLVT 104 (262)
Q Consensus 34 ~~~vlDvGcG~G---~~~~~l~~~~~~v~~vD~s~~~~~~a~~-~-~~~~~~~~~~~~~~~~~~----~~~~~~~~D~V~ 104 (262)
+.++|=.|++.| .++..|++.|++|+.++.++.-++...+ . .++.++..|..+..++.. ..-.-+..|+++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~lv 85 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDILV 85 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence 457788886554 2344456679999999998875554432 2 346666666211122211 111124689888
Q ss_pred Ecccc
Q 037961 105 IASAL 109 (262)
Q Consensus 105 ~~~~~ 109 (262)
.+-+.
T Consensus 86 ~~ag~ 90 (261)
T PRK08265 86 NLACT 90 (261)
T ss_pred ECCCC
Confidence 76543
No 439
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=77.85 E-value=7.4 Score=36.78 Aligned_cols=92 Identities=15% Similarity=0.047 Sum_probs=56.6
Q ss_pred CeEEEEcCcc-cHh-HHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC
Q 037961 35 NLAWDVGTRS-GQA-AASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF 112 (262)
Q Consensus 35 ~~vlDvGcG~-G~~-~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~ 112 (262)
++++=+|||. |+. ++.|.+++.+++.+|.+++.++.+++ .+.....+|..+....++.+. ++.|.|++...
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-~g~~~i~GD~~~~~~L~~a~i--~~a~~viv~~~---- 490 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-RGIRAVLGNAANEEIMQLAHL--DCARWLLLTIP---- 490 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-CCCeEEEcCCCCHHHHHhcCc--cccCEEEEEcC----
Confidence 5667777775 332 33344568899999999999999986 478888888322223333333 35786665422
Q ss_pred ChhH--HHHHHHHhhcCCCeEEEE
Q 037961 113 DLPQ--FYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 113 d~~~--~l~~~~r~Lk~pgG~l~i 134 (262)
|.+. .+-.+.|.+. |.-.++.
T Consensus 491 ~~~~~~~iv~~~~~~~-~~~~iia 513 (558)
T PRK10669 491 NGYEAGEIVASAREKR-PDIEIIA 513 (558)
T ss_pred ChHHHHHHHHHHHHHC-CCCeEEE
Confidence 2222 2444456667 6666655
No 440
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=77.82 E-value=16 Score=31.48 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=55.4
Q ss_pred CCCeEEEEcCcc-cHhHHH-HHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961 33 KRNLAWDVGTRS-GQAAAS-LAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH 110 (262)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~-l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~ 110 (262)
.+.+|+=+|+|. |..... +...|++|+++|.++...+.++.. +..+... .+..+. -..+|+|+..-..
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~-G~~~~~~-----~~l~~~---l~~aDiVI~t~p~- 220 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEM-GLSPFHL-----SELAEE---VGKIDIIFNTIPA- 220 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc-CCeeecH-----HHHHHH---hCCCCEEEECCCh-
Confidence 568899999985 333333 334588999999998877776654 2332211 112111 2358999975332
Q ss_pred cCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 111 WFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 111 ~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
...-+++.+.++ ||+.++-..+.
T Consensus 221 ----~~i~~~~l~~~~-~g~vIIDla~~ 243 (296)
T PRK08306 221 ----LVLTKEVLSKMP-PEALIIDLASK 243 (296)
T ss_pred ----hhhhHHHHHcCC-CCcEEEEEccC
Confidence 223456677889 88877744443
No 441
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=77.80 E-value=7.7 Score=31.26 Aligned_cols=73 Identities=16% Similarity=0.136 Sum_probs=54.9
Q ss_pred CCCCeEEEEcCc-ccHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961 32 PKRNLAWDVGTR-SGQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH 110 (262)
Q Consensus 32 ~~~~~vlDvGcG-~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~ 110 (262)
.....+|=+|.= +|.++..+....++|+.+|+.|.|-.... +++.|..+ +.+..+.+|+|+--..+.
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp--~~v~Fr~~----------~~~~~G~~DlivDlTGlG 110 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFLP--NNVKFRNL----------LKFIRGEVDLIVDLTGLG 110 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcCC--CCccHhhh----------cCCCCCceeEEEeccccC
Confidence 466778888876 79999988888899999999999854333 45665533 334678899999888887
Q ss_pred cCChhH
Q 037961 111 WFDLPQ 116 (262)
Q Consensus 111 ~~d~~~ 116 (262)
-+.|+-
T Consensus 111 G~~Pe~ 116 (254)
T COG4017 111 GIEPEF 116 (254)
T ss_pred CCCHHH
Confidence 777654
No 442
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=77.68 E-value=28 Score=33.45 Aligned_cols=93 Identities=16% Similarity=0.084 Sum_probs=59.0
Q ss_pred CCeEEEEcCcc-cHhH-HHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961 34 RNLAWDVGTRS-GQAA-ASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW 111 (262)
Q Consensus 34 ~~~vlDvGcG~-G~~~-~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~ 111 (262)
.++|+=+|||. |+.. +.|.+.+.+++.+|.+++.++.+++. +.....+|.-+.+-.+..+. +..|+|++...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-g~~v~~GDat~~~~L~~agi--~~A~~vvv~~~--- 473 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF-GMKVFYGDATRMDLLESAGA--AKAEVLINAID--- 473 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc-CCeEEEEeCCCHHHHHhcCC--CcCCEEEEEeC---
Confidence 46778888885 6544 44555688999999999999999874 67778887222222333333 35677776432
Q ss_pred CChhH--HHHHHHHhhcCCCeEEEE
Q 037961 112 FDLPQ--FYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 112 ~d~~~--~l~~~~r~Lk~pgG~l~i 134 (262)
|.+. .+....|-+. |+-.++.
T Consensus 474 -d~~~n~~i~~~ar~~~-p~~~iia 496 (621)
T PRK03562 474 -DPQTSLQLVELVKEHF-PHLQIIA 496 (621)
T ss_pred -CHHHHHHHHHHHHHhC-CCCeEEE
Confidence 3333 3445555566 6766554
No 443
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=77.67 E-value=7.2 Score=34.61 Aligned_cols=92 Identities=14% Similarity=0.167 Sum_probs=64.3
Q ss_pred CCeEEEEcCcccHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCC------CceEEeCCCCchhhhhhccCC-CCceeeEE
Q 037961 34 RNLAWDVGTRSGQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLP------NIRYQLTPTMSITELEQNVAT-QSSVDLVT 104 (262)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~D~V~ 104 (262)
...|+|.=+|||.=+...+.. +. +|+.-|+||..++..+++- +..... .|+..+-.. ...||+|=
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n------~DAN~lm~~~~~~fd~ID 126 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVIN------KDANALLHELHRAFDVID 126 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeec------chHHHHHHhcCCCccEEe
Confidence 578899999999988877764 44 7999999999999988642 222222 234333211 25677664
Q ss_pred EccccccC-ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 105 IASALHWF-DLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 105 ~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
.. -+ .|..++..+.+.++ .||.|.+..
T Consensus 127 iD----PFGSPaPFlDaA~~s~~-~~G~l~vTA 154 (380)
T COG1867 127 ID----PFGSPAPFLDAALRSVR-RGGLLCVTA 154 (380)
T ss_pred cC----CCCCCchHHHHHHHHhh-cCCEEEEEe
Confidence 21 12 46669999999999 899999843
No 444
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=77.38 E-value=4.1 Score=31.14 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=22.3
Q ss_pred EEcCccc--HhHHHHH--h--hCCeEEEEcCCHHHHHHHhcC
Q 037961 39 DVGTRSG--QAAASLA--Q--IYQHVIATDTSPKQLKFAIKL 74 (262)
Q Consensus 39 DvGcG~G--~~~~~l~--~--~~~~v~~vD~s~~~~~~a~~~ 74 (262)
|||+..| ..+..+. . ...+|+++|++|..++..++.
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 6555543 2 357899999999988766543
No 445
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=77.34 E-value=22 Score=32.32 Aligned_cols=90 Identities=13% Similarity=0.008 Sum_probs=54.0
Q ss_pred CCCeEEEEcCcccHhHHHH----HhhCCeEEEEcCCHHHHHHHhc-CCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961 33 KRNLAWDVGTRSGQAAASL----AQIYQHVIATDTSPKQLKFAIK-LPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l----~~~~~~v~~vD~s~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~ 107 (262)
..++++=+|+| .++..+ .+.+.+|+.+|.+++.++.+++ ..++.++.+|..+....+... -..+|.|++..
T Consensus 230 ~~~~iiIiG~G--~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~--~~~a~~vi~~~ 305 (453)
T PRK09496 230 PVKRVMIVGGG--NIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEG--IDEADAFIALT 305 (453)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcC--CccCCEEEECC
Confidence 45677888875 444443 3458899999999999888765 357788888732333333333 34578887643
Q ss_pred ccccCChhHHHHHHHHhhcCCC
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPS 129 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pg 129 (262)
.-. +..-....+.+-+. +.
T Consensus 306 ~~~--~~n~~~~~~~~~~~-~~ 324 (453)
T PRK09496 306 NDD--EANILSSLLAKRLG-AK 324 (453)
T ss_pred CCc--HHHHHHHHHHHHhC-CC
Confidence 311 12223344445555 54
No 446
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=77.32 E-value=45 Score=28.52 Aligned_cols=97 Identities=21% Similarity=0.153 Sum_probs=60.3
Q ss_pred CCCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961 31 TPKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 31 ~~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~ 106 (262)
..++.++|=.|+ +.|..+..+++. +.++++++.++...+.+++..--.++..+.... ...... ..+.+|+|+..
T Consensus 137 ~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~--~~~~vd~v~~~ 214 (329)
T cd08250 137 MKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAEFLKSLGCDRPINYKTEDLGEVLKKE--YPKGVDVVYES 214 (329)
T ss_pred CCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHcCCceEEeCCCccHHHHHHHh--cCCCCeEEEEC
Confidence 356777777774 357777777664 889999999888888776542112222221111 112222 12458999854
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
.. ...+..+.+.|+ ++|+++.+.
T Consensus 215 ~g------~~~~~~~~~~l~-~~g~~v~~g 237 (329)
T cd08250 215 VG------GEMFDTCVDNLA-LKGRLIVIG 237 (329)
T ss_pred Cc------HHHHHHHHHHhc-cCCeEEEEe
Confidence 32 256788899999 999988654
No 447
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=77.21 E-value=42 Score=28.06 Aligned_cols=95 Identities=20% Similarity=0.145 Sum_probs=56.8
Q ss_pred CCCCCeEEEEcC-c-ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcc
Q 037961 31 TPKRNLAWDVGT-R-SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 31 ~~~~~~vlDvGc-G-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~ 107 (262)
..++..+|=.|+ | .|..+..+++ .+.++++++.++ ..+.+++..-........ .+... ......+|+++...
T Consensus 142 ~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~-~~~~~~~~g~~~~~~~~~---~~~~~-~~~~~~~d~v~~~~ 216 (309)
T cd05289 142 LKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA-NADFLRSLGADEVIDYTK---GDFER-AAAPGGVDAVLDTV 216 (309)
T ss_pred CCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch-hHHHHHHcCCCEEEeCCC---Cchhh-ccCCCCceEEEECC
Confidence 346778888886 3 4666666665 488888888776 666665432112222111 01111 12345689888542
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
. ...+..+.+.|+ ++|+++....
T Consensus 217 ~------~~~~~~~~~~l~-~~g~~v~~g~ 239 (309)
T cd05289 217 G------GETLARSLALVK-PGGRLVSIAG 239 (309)
T ss_pred c------hHHHHHHHHHHh-cCcEEEEEcC
Confidence 2 237788889999 9999987553
No 448
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=77.16 E-value=43 Score=28.21 Aligned_cols=98 Identities=14% Similarity=0.105 Sum_probs=58.5
Q ss_pred CCCCCeEEEEcC--cccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEe-CCCCch-hhhhhccCCCCceeeEEE
Q 037961 31 TPKRNLAWDVGT--RSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQL-TPTMSI-TELEQNVATQSSVDLVTI 105 (262)
Q Consensus 31 ~~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~D~V~~ 105 (262)
..++..+|=.|+ +.|..+..++. .|.+++++..++...+.++.. ++.... ...... ...... .....+|+++.
T Consensus 137 ~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~-~~~~~~d~~i~ 214 (325)
T TIGR02824 137 LKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCAACEAL-GADIAINYREEDFVEVVKAE-TGGKGVDVILD 214 (325)
T ss_pred CCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CCcEEEecCchhHHHHHHHH-cCCCCeEEEEE
Confidence 346677777775 34555555555 488999999998888777543 222221 111000 111112 12346999986
Q ss_pred ccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
+.. ...+..+.+.|+ ++|+++.+..
T Consensus 215 ~~~------~~~~~~~~~~l~-~~g~~v~~g~ 239 (325)
T TIGR02824 215 IVG------GSYLNRNIKALA-LDGRIVQIGF 239 (325)
T ss_pred CCc------hHHHHHHHHhhc-cCcEEEEEec
Confidence 533 235677888999 9999987654
No 449
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=77.13 E-value=42 Score=29.18 Aligned_cols=97 Identities=14% Similarity=0.192 Sum_probs=56.8
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHhh-CC-eEEEEcCCHHHHHHHhcCCCceEE-eCCCCch-hhhhhccCCCCceeeEEEc
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQI-YQ-HVIATDTSPKQLKFAIKLPNIRYQ-LTPTMSI-TELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~~-~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~D~V~~~ 106 (262)
.++.+||=.|+|. |..+..+++. |. .++++|-++.-.+.+.+.. +... ....... ..+..+ .+...+|+|+-.
T Consensus 173 ~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g-~~~v~~~~~~~~~~~~~~~-~~~~~vdvvld~ 250 (350)
T cd08256 173 KFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARKFG-ADVVLNPPEVDVVEKIKEL-TGGYGCDIYIEA 250 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHHcC-CcEEecCCCcCHHHHHHHH-hCCCCCCEEEEC
Confidence 4556655566643 5566666664 54 5789999988877776553 2222 2111000 111122 123358998853
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
.. ....+.++.+.|+ ++|+++.+.
T Consensus 251 ~g-----~~~~~~~~~~~l~-~~G~~v~~g 274 (350)
T cd08256 251 TG-----HPSAVEQGLNMIR-KLGRFVEFS 274 (350)
T ss_pred CC-----ChHHHHHHHHHhh-cCCEEEEEc
Confidence 22 1346788999999 999998754
No 450
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=77.04 E-value=16 Score=31.22 Aligned_cols=38 Identities=18% Similarity=0.097 Sum_probs=28.7
Q ss_pred CeEEEEcCccc--HhHHHHHhhCCeEEEEcCCHHHHHHHh
Q 037961 35 NLAWDVGTRSG--QAAASLAQIYQHVIATDTSPKQLKFAI 72 (262)
Q Consensus 35 ~~vlDvGcG~G--~~~~~l~~~~~~v~~vD~s~~~~~~a~ 72 (262)
..|.=||+|.- ..+..++..|.+|+..|.+++.++.+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~ 44 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGL 44 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 45677888862 345566777999999999999887653
No 451
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=76.85 E-value=22 Score=31.14 Aligned_cols=94 Identities=13% Similarity=0.109 Sum_probs=53.3
Q ss_pred CeEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhcC----------CCceEEeC-CCCch-hhhhhccCCCCce
Q 037961 35 NLAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIKL----------PNIRYQLT-PTMSI-TELEQNVATQSSV 100 (262)
Q Consensus 35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~----------~~~~~~~~-~~~~~-~~~~~~~~~~~~~ 100 (262)
.+|-=||+|+ ..++..++..|.+|+..|++++.++.++.. .+..-... ..+.. .+.++ .-...
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~---av~~a 84 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEA---CVADA 84 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH---HhcCC
Confidence 5678899996 345566778899999999999988765431 00000000 00000 11111 11346
Q ss_pred eeEEEccccccCC-hhHHHHHHHHhhcCCCeEEE
Q 037961 101 DLVTIASALHWFD-LPQFYKQVKWVLKKPSGVIA 133 (262)
Q Consensus 101 D~V~~~~~~~~~d-~~~~l~~~~r~Lk~pgG~l~ 133 (262)
|+|+-+-. .-.+ ...+++++.++++ |+-.|+
T Consensus 85 DlViEavp-E~l~vK~~lf~~l~~~~~-~~aIla 116 (321)
T PRK07066 85 DFIQESAP-EREALKLELHERISRAAK-PDAIIA 116 (321)
T ss_pred CEEEECCc-CCHHHHHHHHHHHHHhCC-CCeEEE
Confidence 88886422 2222 3347889999998 776443
No 452
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=76.25 E-value=18 Score=30.90 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=53.8
Q ss_pred eEEEEcCcc-c-HhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCC---CCchhhhhhccCCCCceeeEEEccccc
Q 037961 36 LAWDVGTRS-G-QAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTP---TMSITELEQNVATQSSVDLVTIASALH 110 (262)
Q Consensus 36 ~vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~D~V~~~~~~~ 110 (262)
+|+=+|+|. | .++..|++.+.+|+.++. ++.++..++. ++...... ........+.......+|+|+...--
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~- 78 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRER-GLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA- 78 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhC-CeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-
Confidence 466788886 3 355566777899999998 6666665542 22222111 00000000000012568988754332
Q ss_pred cCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 111 WFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 111 ~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
.+.+.+++++...+. ++..++...
T Consensus 79 -~~~~~~~~~l~~~~~-~~~~ii~~~ 102 (305)
T PRK12921 79 -YQLDAAIPDLKPLVG-EDTVIIPLQ 102 (305)
T ss_pred -cCHHHHHHHHHhhcC-CCCEEEEee
Confidence 256778888888888 776655443
No 453
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=76.09 E-value=25 Score=30.27 Aligned_cols=86 Identities=13% Similarity=0.067 Sum_probs=51.7
Q ss_pred EEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCCh
Q 037961 37 AWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDL 114 (262)
Q Consensus 37 vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~ 114 (262)
|-=||+|. +..+..|++.+.+|++.|.+++.++.+.+.. .... .+ ..++.. .....|+|+..-.-. ..
T Consensus 3 Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g-~~~~-~s---~~~~~~---~~~~~dvIi~~vp~~--~~ 72 (298)
T TIGR00872 3 LGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDR-TTGV-AN---LRELSQ---RLSAPRVVWVMVPHG--IV 72 (298)
T ss_pred EEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-Cccc-CC---HHHHHh---hcCCCCEEEEEcCch--HH
Confidence 45578876 2355667778899999999999888776532 1111 11 111111 112468888654332 44
Q ss_pred hHHHHHHHHhhcCCCeEEE
Q 037961 115 PQFYKQVKWVLKKPSGVIA 133 (262)
Q Consensus 115 ~~~l~~~~r~Lk~pgG~l~ 133 (262)
+.+++++...|+ +|-+++
T Consensus 73 ~~v~~~l~~~l~-~g~ivi 90 (298)
T TIGR00872 73 DAVLEELAPTLE-KGDIVI 90 (298)
T ss_pred HHHHHHHHhhCC-CCCEEE
Confidence 567788888888 775443
No 454
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=76.08 E-value=42 Score=28.64 Aligned_cols=96 Identities=14% Similarity=0.053 Sum_probs=58.0
Q ss_pred CCCCC-eEEEEcC-c-ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCce-EEeCCCCchhhhhhccCCCCceeeEEE
Q 037961 31 TPKRN-LAWDVGT-R-SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIR-YQLTPTMSITELEQNVATQSSVDLVTI 105 (262)
Q Consensus 31 ~~~~~-~vlDvGc-G-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~V~~ 105 (262)
..++. +||=.|+ | .|..+..++. .|.++++++-+++..+.+++. ++. +........ ....+ ..+.+|+|+-
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~~~~~~~~-g~~~~~~~~~~~~-~~~~~--~~~~~d~vld 217 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEEEDYLKEL-GASEVIDREDLSP-PGKPL--EKERWAGAVD 217 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc-CCcEEEccccHHH-HHHHh--cCCCceEEEE
Confidence 34566 8888887 3 3666666666 488888888777777777654 222 221111000 11111 2234898875
Q ss_pred ccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
... ...+.++.+.|+ ++|+++.+..
T Consensus 218 ~~g------~~~~~~~~~~l~-~~G~~v~~g~ 242 (323)
T TIGR02823 218 TVG------GHTLANVLAQLK-YGGAVAACGL 242 (323)
T ss_pred Ccc------HHHHHHHHHHhC-CCCEEEEEcc
Confidence 432 235678899999 9999987653
No 455
>PRK08267 short chain dehydrogenase; Provisional
Probab=75.89 E-value=35 Score=28.16 Aligned_cols=75 Identities=16% Similarity=0.048 Sum_probs=44.4
Q ss_pred CeEEEEcCccc---HhHHHHHhhCCeEEEEcCCHHHHHHHhc---CCCceEEeCCCCchhhhhh----ccCC-CCceeeE
Q 037961 35 NLAWDVGTRSG---QAAASLAQIYQHVIATDTSPKQLKFAIK---LPNIRYQLTPTMSITELEQ----NVAT-QSSVDLV 103 (262)
Q Consensus 35 ~~vlDvGcG~G---~~~~~l~~~~~~v~~vD~s~~~~~~a~~---~~~~~~~~~~~~~~~~~~~----~~~~-~~~~D~V 103 (262)
.++|-.|++.| .++..+++.|.+|++++.+++.++...+ ..++.+...|..+..+... ..-. .+++|+|
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~v 81 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDVL 81 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCEE
Confidence 35677776654 2344556679999999999887766543 1356677766211122221 1101 4578999
Q ss_pred EEcccc
Q 037961 104 TIASAL 109 (262)
Q Consensus 104 ~~~~~~ 109 (262)
+.+-+.
T Consensus 82 i~~ag~ 87 (260)
T PRK08267 82 FNNAGI 87 (260)
T ss_pred EECCCC
Confidence 876554
No 456
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=75.53 E-value=21 Score=30.69 Aligned_cols=93 Identities=18% Similarity=0.132 Sum_probs=58.9
Q ss_pred CCCCeEEEEcCc--ccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccc
Q 037961 32 PKRNLAWDVGTR--SGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 32 ~~~~~vlDvGcG--~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~ 108 (262)
.++..||=.|++ .|..+..+++. |.++++++.+++..+.+++. ...+.....+ ..++..+ +.+|+++....
T Consensus 161 ~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~v~~~----~~~d~~ld~~g 234 (334)
T PRK13771 161 KKGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKIVSKY-ADYVIVGSKF-SEEVKKI----GGADIVIETVG 234 (334)
T ss_pred CCCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-HHHhcCchhH-HHHHHhc----CCCcEEEEcCC
Confidence 466778888873 47777777764 88999999999888877654 1111111000 0112222 24888885432
Q ss_pred cccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
...+.++.+.|+ ++|+++....
T Consensus 235 ------~~~~~~~~~~l~-~~G~~v~~g~ 256 (334)
T PRK13771 235 ------TPTLEESLRSLN-MGGKIIQIGN 256 (334)
T ss_pred ------hHHHHHHHHHHh-cCCEEEEEec
Confidence 235788899999 9999987654
No 457
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=75.04 E-value=45 Score=28.08 Aligned_cols=89 Identities=20% Similarity=0.143 Sum_probs=58.6
Q ss_pred CCCeEEEEcC--cccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccc
Q 037961 33 KRNLAWDVGT--RSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASAL 109 (262)
Q Consensus 33 ~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~ 109 (262)
++..++=.|+ +.|..+..+++ .|.++++++.+++..+.+++. ++...... .+.+ .++.+|+++-...
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~-g~~~~~~~------~~~~--~~~~~d~vl~~~g- 201 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLREL-GAAEVVVG------GSEL--SGAPVDLVVDSVG- 201 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc-CCcEEEec------cccc--cCCCceEEEECCC-
Confidence 4677787777 34666666665 488999999998888888764 33221111 0111 2346899985422
Q ss_pred ccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 110 HWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 110 ~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
...+.+..+.|+ ++|+++.+..
T Consensus 202 -----~~~~~~~~~~l~-~~G~~v~~g~ 223 (305)
T cd08270 202 -----GPQLARALELLA-PGGTVVSVGS 223 (305)
T ss_pred -----cHHHHHHHHHhc-CCCEEEEEec
Confidence 236788999999 9999987653
No 458
>PRK07576 short chain dehydrogenase; Provisional
Probab=75.00 E-value=26 Score=29.18 Aligned_cols=76 Identities=17% Similarity=0.121 Sum_probs=40.9
Q ss_pred CCCeEEEEcCccc--H-hHHHHHhhCCeEEEEcCCHHHHHHHhc-----CCCceEEeCCCCchhhhhh----ccCCCCce
Q 037961 33 KRNLAWDVGTRSG--Q-AAASLAQIYQHVIATDTSPKQLKFAIK-----LPNIRYQLTPTMSITELEQ----NVATQSSV 100 (262)
Q Consensus 33 ~~~~vlDvGcG~G--~-~~~~l~~~~~~v~~vD~s~~~~~~a~~-----~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 100 (262)
++.++|-.|.+.| . ++..++..|++|++++.+++.++...+ ..++.+...|..+..++.. ..-..+.+
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~i 87 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPI 87 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 3456777775332 2 333455678999999998776654321 1344555555111111211 11112468
Q ss_pred eeEEEccc
Q 037961 101 DLVTIASA 108 (262)
Q Consensus 101 D~V~~~~~ 108 (262)
|+++.+-+
T Consensus 88 D~vi~~ag 95 (264)
T PRK07576 88 DVLVSGAA 95 (264)
T ss_pred CEEEECCC
Confidence 99986543
No 459
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=74.63 E-value=15 Score=31.22 Aligned_cols=85 Identities=19% Similarity=0.165 Sum_probs=51.6
Q ss_pred eEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhc-----------CC------------CceEEeCCCCchhhh
Q 037961 36 LAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIK-----------LP------------NIRYQLTPTMSITEL 90 (262)
Q Consensus 36 ~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~-----------~~------------~~~~~~~~~~~~~~~ 90 (262)
.|-=||+|. +..+..++..+.+|+++|++++.++.+++ .. ++.+. .+.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-------~~~ 77 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-------TDL 77 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-------CCH
Confidence 466788885 45566677788999999999999865431 11 11111 111
Q ss_pred hhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEE
Q 037961 91 EQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVI 132 (262)
Q Consensus 91 ~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l 132 (262)
+. -...|+|+.+-.-...-...+++++.+.++ |+..+
T Consensus 78 ~~----~~~aDlVi~av~e~~~~k~~~~~~l~~~~~-~~~il 114 (282)
T PRK05808 78 DD----LKDADLVIEAATENMDLKKKIFAQLDEIAK-PEAIL 114 (282)
T ss_pred HH----hccCCeeeecccccHHHHHHHHHHHHhhCC-CCcEE
Confidence 11 234788886432111123468889999988 77666
No 460
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=74.45 E-value=55 Score=28.11 Aligned_cols=93 Identities=22% Similarity=0.271 Sum_probs=59.2
Q ss_pred CCeEEEEcC--cccHhHHHHHh-h-CCeEEEEcCCHHHHHHHhcCCCceEEeC-CCCchhhhhhccCCCCceeeEEEccc
Q 037961 34 RNLAWDVGT--RSGQAAASLAQ-I-YQHVIATDTSPKQLKFAIKLPNIRYQLT-PTMSITELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 34 ~~~vlDvGc--G~G~~~~~l~~-~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~V~~~~~ 108 (262)
+.+||=.|+ +.|..+..+++ . |.+|+++..+++..+.+++.. +..+.. .......+.. ...+.+|+|+...
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~~~~~~~l~~~g-~~~~~~~~~~~~~~i~~--~~~~~vd~vl~~~- 224 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASRPESQEWVLELG-AHHVIDHSKPLKAQLEK--LGLEAVSYVFSLT- 224 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHcC-CCEEEECCCCHHHHHHH--hcCCCCCEEEEcC-
Confidence 677777775 45777777777 3 789999999888888876542 222221 1100011222 2344689888431
Q ss_pred cccCChhHHHHHHHHhhcCCCeEEEEE
Q 037961 109 LHWFDLPQFYKQVKWVLKKPSGVIAAW 135 (262)
Q Consensus 109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~ 135 (262)
.....+.++.+.|+ ++|+++..
T Consensus 225 ----~~~~~~~~~~~~l~-~~G~~v~~ 246 (336)
T TIGR02817 225 ----HTDQHFKEIVELLA-PQGRFALI 246 (336)
T ss_pred ----CcHHHHHHHHHHhc-cCCEEEEE
Confidence 11356788999999 99999864
No 461
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=74.32 E-value=10 Score=29.21 Aligned_cols=108 Identities=13% Similarity=0.120 Sum_probs=52.7
Q ss_pred HHHHHHHhhCC-CCCeEEEEcCcccHhHHHHHhh--CCeEEEEcCCHHHHHHHhcCCCceEEeCC-CCchhhhhhccCCC
Q 037961 22 ELFKLIASKTP-KRNLAWDVGTRSGQAAASLAQI--YQHVIATDTSPKQLKFAIKLPNIRYQLTP-TMSITELEQNVATQ 97 (262)
Q Consensus 22 ~~~~~l~~~~~-~~~~vlDvGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 97 (262)
..+++...... ...-|||+|-|.|..=-+|.+. +.+|++.|-.-..-. ....+.-.++.++ .- .+..++.-.
T Consensus 16 ~~L~~a~~~v~~~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~hp-~~~P~~~~~ilGdi~~---tl~~~~~~g 91 (160)
T PF12692_consen 16 DCLNWAAAQVAGLPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRALACHP-SSTPPEEDLILGDIRE---TLPALARFG 91 (160)
T ss_dssp HHHHHHHHHTTT--S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-G-GG---GGGEEES-HHH---HHHHHHHH-
T ss_pred HHHHHHHHHhcCCCCceEEeccCCCccHHHHHHhCCCCeEEEEeeecccCC-CCCCchHheeeccHHH---HhHHHHhcC
Confidence 44566655553 4466899999999999999886 578999887422110 1112445566665 11 111111223
Q ss_pred CceeeEEEccccccCChhH-----HHHHHHHhhcCCCeEEEE
Q 037961 98 SSVDLVTIASALHWFDLPQ-----FYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 98 ~~~D~V~~~~~~~~~d~~~-----~l~~~~r~Lk~pgG~l~i 134 (262)
.+.-++.+....|.-+.+. +-.-+..+|. |||.++-
T Consensus 92 ~~a~laHaD~G~g~~~~d~a~a~~lspli~~~la-~gGi~vS 132 (160)
T PF12692_consen 92 AGAALAHADIGTGDKEKDDATAAWLSPLIAPVLA-PGGIMVS 132 (160)
T ss_dssp S-EEEEEE----S-HHHHHHHHHHHHHHHGGGEE-EEEEEEE
T ss_pred CceEEEEeecCCCCcchhHHHHHhhhHHHHHHhc-CCcEEEe
Confidence 4556666666666543322 2335667888 8998765
No 462
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=73.98 E-value=23 Score=30.68 Aligned_cols=99 Identities=12% Similarity=-0.019 Sum_probs=55.8
Q ss_pred CCeEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEe--CC-CCchhhhhhccCCCCceeeEEEccc
Q 037961 34 RNLAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQL--TP-TMSITELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 34 ~~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~D~V~~~~~ 108 (262)
..+|+=+|+|. |.++..|++.|.+|+.+..++. +..++. .+.... ++ ......+...+-..+.+|+|+..--
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK 81 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVREN-GLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLK 81 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhC-CeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEec
Confidence 35688899996 4566677778899988887652 222221 222211 11 0000000001112357899985433
Q ss_pred cccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 109 LHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
..+...+++.+..+++ +++.++....+
T Consensus 82 --~~~~~~~~~~l~~~~~-~~~~iv~lqNG 108 (313)
T PRK06249 82 --TTANALLAPLIPQVAA-PDAKVLLLQNG 108 (313)
T ss_pred --CCChHhHHHHHhhhcC-CCCEEEEecCC
Confidence 2345678888888899 89887765444
No 463
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=73.91 E-value=53 Score=28.33 Aligned_cols=100 Identities=16% Similarity=0.102 Sum_probs=59.1
Q ss_pred CCCCCeEEEEcCcc-cHhHHHHHhh-CCe-EEEEcCCHHHHHHHhcCCCceEEeCCCCch-hh---hhhccCCCCceeeE
Q 037961 31 TPKRNLAWDVGTRS-GQAAASLAQI-YQH-VIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TE---LEQNVATQSSVDLV 103 (262)
Q Consensus 31 ~~~~~~vlDvGcG~-G~~~~~l~~~-~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~D~V 103 (262)
..++.+||=.|+|. |..+..+++. |.+ +++++-++...+.+++.....++....... .. .... ...+.+|+|
T Consensus 159 ~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~-~~~~~~d~v 237 (341)
T cd08262 159 LTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALAMGADIVVDPAADSPFAAWAAELAR-AGGPKPAVI 237 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEEcCCCcCHHHHHHHHHHH-hCCCCCCEE
Confidence 35667777777643 5555555554 665 888999998888887653222222111000 01 1111 234569998
Q ss_pred EEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 104 TIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 104 ~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
+-... ....+.++.+.|+ ++|+++....
T Consensus 238 id~~g-----~~~~~~~~~~~l~-~~g~~v~~g~ 265 (341)
T cd08262 238 FECVG-----APGLIQQIIEGAP-PGGRIVVVGV 265 (341)
T ss_pred EECCC-----CHHHHHHHHHHhc-cCCEEEEECC
Confidence 84321 1246788899999 9999987653
No 464
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=73.89 E-value=11 Score=31.83 Aligned_cols=91 Identities=22% Similarity=0.293 Sum_probs=51.1
Q ss_pred HHHHHhhC--CeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhh
Q 037961 48 AASLAQIY--QHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVL 125 (262)
Q Consensus 48 ~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~L 125 (262)
++.|.+.+ .+|+|.|.++..++.|.+..-+.-... +.+.. ..+|+|+.+..+. ....+++++...+
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~------~~~~~----~~~DlvvlavP~~--~~~~~l~~~~~~~ 69 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALELGIIDEAST------DIEAV----EDADLVVLAVPVS--AIEDVLEEIAPYL 69 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEES------HHHHG----GCCSEEEE-S-HH--HHHHHHHHHHCGS
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccC------CHhHh----cCCCEEEEcCCHH--HHHHHHHHhhhhc
Confidence 56677776 699999999999999976533322221 11111 2369999765432 2456788888888
Q ss_pred cCCCeEEEEEecCCCcccHHHHHhhc
Q 037961 126 KKPSGVIAAWTYTMPEINESVGAVFK 151 (262)
Q Consensus 126 k~pgG~l~i~~~~~~~~~~~~~~~~~ 151 (262)
+ +|+.+.=.+.....+...+.+...
T Consensus 70 ~-~~~iv~Dv~SvK~~~~~~~~~~~~ 94 (258)
T PF02153_consen 70 K-PGAIVTDVGSVKAPIVEAMERLLP 94 (258)
T ss_dssp --TTSEEEE--S-CHHHHHHHHHHHT
T ss_pred C-CCcEEEEeCCCCHHHHHHHHHhcC
Confidence 8 787665333332233344444444
No 465
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=73.82 E-value=4.5 Score=32.72 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=19.6
Q ss_pred hhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 114 LPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 114 ~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
....+.++.|+|| |||.++++...
T Consensus 35 ~~~~~~~~~rvLk-~~g~~~i~~~~ 58 (231)
T PF01555_consen 35 MEEWLKECYRVLK-PGGSIFIFIDD 58 (231)
T ss_dssp HHHHHHHHHHHEE-EEEEEEEEE-C
T ss_pred HHHHHHHHHhhcC-CCeeEEEEecc
Confidence 5668999999999 99999985543
No 466
>PRK08324 short chain dehydrogenase; Validated
Probab=73.80 E-value=19 Score=34.95 Aligned_cols=103 Identities=16% Similarity=0.116 Sum_probs=58.8
Q ss_pred CCCeEEEEcCccc--H-hHHHHHhhCCeEEEEcCCHHHHHHHhc-C---CCceEEeCCCCchhhhhh----ccCCCCcee
Q 037961 33 KRNLAWDVGTRSG--Q-AAASLAQIYQHVIATDTSPKQLKFAIK-L---PNIRYQLTPTMSITELEQ----NVATQSSVD 101 (262)
Q Consensus 33 ~~~~vlDvGcG~G--~-~~~~l~~~~~~v~~vD~s~~~~~~a~~-~---~~~~~~~~~~~~~~~~~~----~~~~~~~~D 101 (262)
+++++|=.|++.| . ++..+++.|.+|+++|.++.-++.+.. . .++.++..|......+.. ..-..+.+|
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~iD 500 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGVD 500 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 3467888886443 2 333455578999999999887665443 1 245566655111111111 111134689
Q ss_pred eEEEccccccCC--------------------hhHHHHHHHHhhcCC---CeEEEEEe
Q 037961 102 LVTIASALHWFD--------------------LPQFYKQVKWVLKKP---SGVIAAWT 136 (262)
Q Consensus 102 ~V~~~~~~~~~d--------------------~~~~l~~~~r~Lk~p---gG~l~i~~ 136 (262)
+|+.+-+..... ...+++.+.+.++ . ||.+++..
T Consensus 501 vvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~-~~~~~g~iV~vs 557 (681)
T PRK08324 501 IVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMK-AQGLGGSIVFIA 557 (681)
T ss_pred EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHH-hcCCCcEEEEEC
Confidence 998766542211 2335667777777 5 67777644
No 467
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=73.77 E-value=53 Score=27.56 Aligned_cols=99 Identities=20% Similarity=0.149 Sum_probs=58.7
Q ss_pred CCCCCeEEEEcCc--ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961 31 TPKRNLAWDVGTR--SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 31 ~~~~~~vlDvGcG--~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~ 106 (262)
..++.++|=.|++ .|..+..++. .|.+++.++.++..++.++....-.......... ..+.... ....+|+++.+
T Consensus 137 ~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~d~vi~~ 215 (323)
T cd05276 137 LKAGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLEACRALGADVAINYRTEDFAEEVKEAT-GGRGVDVILDM 215 (323)
T ss_pred CCCCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEeCCchhHHHHHHHHh-CCCCeEEEEEC
Confidence 3466788878853 4566655555 4889999999988888776542111111111000 1111221 23469999865
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.. ...+....+.++ ++|+++..+.
T Consensus 216 ~g------~~~~~~~~~~~~-~~g~~i~~~~ 239 (323)
T cd05276 216 VG------GDYLARNLRALA-PDGRLVLIGL 239 (323)
T ss_pred Cc------hHHHHHHHHhhc-cCCEEEEEec
Confidence 43 123667788899 8999887553
No 468
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=73.62 E-value=22 Score=27.88 Aligned_cols=95 Identities=18% Similarity=0.092 Sum_probs=57.6
Q ss_pred EEcCcccHhHHHHHhh---CCeEEEEcCCHH--HHHHHh---------cCCCceEEeCCCCchhhhhhc----cCCCCce
Q 037961 39 DVGTRSGQAAASLAQI---YQHVIATDTSPK--QLKFAI---------KLPNIRYQLTPTMSITELEQN----VATQSSV 100 (262)
Q Consensus 39 DvGcG~G~~~~~l~~~---~~~v~~vD~s~~--~~~~a~---------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 100 (262)
=||=|.=+++..|++. ..+++++-.+.. ..+.-. +..++.+..+- |+..+ ....+.|
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~V-----Dat~l~~~~~~~~~~F 76 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGV-----DATKLHKHFRLKNQRF 76 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCC-----CCCcccccccccCCcC
Confidence 4677777888888875 347777655543 222111 01344444332 22222 2356889
Q ss_pred eeEEEcccccc-----C--C-------hhHHHHHHHHhhcCCCeEEEEEecCC
Q 037961 101 DLVTIASALHW-----F--D-------LPQFYKQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 101 D~V~~~~~~~~-----~--d-------~~~~l~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
|.|+-++..-- - + ...+++.+.++|+ ++|.+.|.....
T Consensus 77 DrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~-~~G~IhVTl~~~ 128 (166)
T PF10354_consen 77 DRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLK-PDGEIHVTLKDG 128 (166)
T ss_pred CEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcC-CCCEEEEEeCCC
Confidence 99998876543 0 1 2337889999999 999999855543
No 469
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=73.23 E-value=9.2 Score=31.57 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=35.8
Q ss_pred HHHHHHhhCC--CCCeEEEEcCcccHhHHHHHhhC-CeEEEEcCCHHHHHHH
Q 037961 23 LFKLIASKTP--KRNLAWDVGTRSGQAAASLAQIY-QHVIATDTSPKQLKFA 71 (262)
Q Consensus 23 ~~~~l~~~~~--~~~~vlDvGcG~G~~~~~l~~~~-~~v~~vD~s~~~~~~a 71 (262)
+.+.|.++.+ ....|.++|.|+|..|+.+.+.+ .++..++.++..+.-.
T Consensus 38 lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~L 89 (326)
T KOG0821|consen 38 LTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGL 89 (326)
T ss_pred HHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHH
Confidence 3444555544 56788999999999999999875 4677888877655433
No 470
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=72.55 E-value=19 Score=35.27 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=56.5
Q ss_pred CeEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----------CCceEEeCC----CCch-hhhhhccCC
Q 037961 35 NLAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIKL-----------PNIRYQLTP----TMSI-TELEQNVAT 96 (262)
Q Consensus 35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~----~~~~-~~~~~~~~~ 96 (262)
.+|--||+|+ +..+..++..|.+|+.+|++++.++.+++. ..++-...+ .+.. .+.. .
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~----~ 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA----G 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH----H
Confidence 4678899997 345556677899999999999999876531 000000000 0000 0111 1
Q ss_pred CCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961 97 QSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 97 ~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
-...|+|+-+ ...-+ -..++++++.++++ |+..|+-
T Consensus 390 ~~~aDlViEa-v~E~l~~K~~vf~~l~~~~~-~~~ilas 426 (714)
T TIGR02437 390 FDNVDIVVEA-VVENPKVKAAVLAEVEQHVR-EDAILAS 426 (714)
T ss_pred hcCCCEEEEc-CcccHHHHHHHHHHHHhhCC-CCcEEEE
Confidence 2457888854 22333 34459999999999 8877655
No 471
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=72.51 E-value=59 Score=29.06 Aligned_cols=98 Identities=13% Similarity=0.120 Sum_probs=59.9
Q ss_pred CCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCc----------------------
Q 037961 32 PKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMS---------------------- 86 (262)
Q Consensus 32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~---------------------- 86 (262)
.++.+||=.|+ +.|..+..+++. |.++++++.++...+.+++.....++..+..+
T Consensus 188 ~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (398)
T TIGR01751 188 KPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVVSSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKR 267 (398)
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcchh
Confidence 46678888887 346676666664 88899999998888888764221222111000
Q ss_pred h-hhhhhccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 87 I-TELEQNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 87 ~-~~~~~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
+ ..+..+ ...+.+|+|+-... ...+....+.|+ ++|+++.+..
T Consensus 268 ~~~~~~~~-~~~~g~d~vld~~g------~~~~~~~~~~l~-~~G~~v~~g~ 311 (398)
T TIGR01751 268 FGKRIREL-TGGEDPDIVFEHPG------RATFPTSVFVCR-RGGMVVICGG 311 (398)
T ss_pred HHHHHHHH-cCCCCceEEEECCc------HHHHHHHHHhhc-cCCEEEEEcc
Confidence 0 000111 12245898885432 246778899999 9999987654
No 472
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.14 E-value=24 Score=30.45 Aligned_cols=39 Identities=21% Similarity=0.068 Sum_probs=29.6
Q ss_pred CeEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhc
Q 037961 35 NLAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIK 73 (262)
Q Consensus 35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~ 73 (262)
..|.=||+|. +..+..++..+.+|+++|.+++.++.+++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~ 45 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARG 45 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence 4567789985 34555667778899999999998877653
No 473
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=72.08 E-value=59 Score=28.80 Aligned_cols=98 Identities=16% Similarity=0.040 Sum_probs=56.3
Q ss_pred CCCCeEEEEcCcc-cHhHHHHHh-hCC-eEEEEcCCHHHHHHHhcCCCceEEeCCCCc--h-hhhhhccCCCCceeeEEE
Q 037961 32 PKRNLAWDVGTRS-GQAAASLAQ-IYQ-HVIATDTSPKQLKFAIKLPNIRYQLTPTMS--I-TELEQNVATQSSVDLVTI 105 (262)
Q Consensus 32 ~~~~~vlDvGcG~-G~~~~~l~~-~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~D~V~~ 105 (262)
.++.+||=.|+|. |..+..+++ .|. +|+++|.++..++.+++..--.++...... . ..+..+ ..+.+|+|+-
T Consensus 189 ~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~--~~~~~d~vld 266 (373)
T cd08299 189 TPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLTEM--TDGGVDFSFE 266 (373)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecccccchhHHHHHHHH--hCCCCeEEEE
Confidence 4667777777754 555555555 477 799999999999888764221222111100 0 111222 1246898874
Q ss_pred ccccccCChhHHHHHHHH-hhcCCCeEEEEEec
Q 037961 106 ASALHWFDLPQFYKQVKW-VLKKPSGVIAAWTY 137 (262)
Q Consensus 106 ~~~~~~~d~~~~l~~~~r-~Lk~pgG~l~i~~~ 137 (262)
... ....+....+ +++ +||+++....
T Consensus 267 ~~g-----~~~~~~~~~~~~~~-~~G~~v~~g~ 293 (373)
T cd08299 267 VIG-----RLDTMKAALASCHE-GYGVSVIVGV 293 (373)
T ss_pred CCC-----CcHHHHHHHHhhcc-CCCEEEEEcc
Confidence 322 1345566444 456 7999988653
No 474
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=72.00 E-value=41 Score=29.16 Aligned_cols=97 Identities=18% Similarity=0.119 Sum_probs=58.6
Q ss_pred CCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~ 107 (262)
.++.++|=.|+ +.|..+..+++. |.+++++. +++-.+.+++..--.++....... ..+..+ ..+.+|+|+...
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~~~~~~~~~~~g~~~v~~~~~~~~~~~l~~~--~~~~~d~vl~~~ 229 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-SPKNFDLVKSLGADAVFDYHDPDVVEDIRAA--TGGKLRYALDCI 229 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-CcccHHHHHhcCCCEEEECCCchHHHHHHHh--cCCCeeEEEEee
Confidence 35677888886 357777777764 88888876 667677776542112222211111 112222 235699998532
Q ss_pred ccccCChhHHHHHHHHhhcCC--CeEEEEEec
Q 037961 108 ALHWFDLPQFYKQVKWVLKKP--SGVIAAWTY 137 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~p--gG~l~i~~~ 137 (262)
. ....+.++.+.|+ + +|+++.+..
T Consensus 230 g-----~~~~~~~~~~~l~-~~~~g~~v~~g~ 255 (339)
T cd08249 230 S-----TPESAQLCAEALG-RSGGGKLVSLLP 255 (339)
T ss_pred c-----cchHHHHHHHHHh-ccCCCEEEEecC
Confidence 2 1246788999999 9 999987543
No 475
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=71.78 E-value=16 Score=32.83 Aligned_cols=69 Identities=22% Similarity=0.150 Sum_probs=45.0
Q ss_pred CeEEEEcCcc-cHhHHH-HHhhC-CeEEEEcCCHHHHHHHhcC--CCceEEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961 35 NLAWDVGTRS-GQAAAS-LAQIY-QHVIATDTSPKQLKFAIKL--PNIRYQLTPTMSITELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 35 ~~vlDvGcG~-G~~~~~-l~~~~-~~v~~vD~s~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~ 106 (262)
..||=+|||. |+.... |++++ .+|+..|-|++.++.+... .+++..+.|......+..+ -..+|+|+..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~l---i~~~d~VIn~ 75 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVAL---IKDFDLVINA 75 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHH---HhcCCEEEEe
Confidence 4589999975 555444 45666 7999999999999888654 4677777662222222222 1235998863
No 476
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=71.60 E-value=14 Score=34.18 Aligned_cols=89 Identities=13% Similarity=0.068 Sum_probs=54.4
Q ss_pred CCCeEEEEcCcc-cHhHHHH-HhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccc
Q 037961 33 KRNLAWDVGTRS-GQAAASL-AQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALH 110 (262)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~ 110 (262)
.+.+|+=+|+|. |...... ...|++|+++|.++.-...+... ++.+.. +++. -...|+|+....
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~-G~~~~~--------leel---l~~ADIVI~atG-- 318 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAME-GYQVVT--------LEDV---VETADIFVTATG-- 318 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhc-Cceecc--------HHHH---HhcCCEEEECCC--
Confidence 678889999996 4333332 33588999998887655444332 333221 1221 135799987533
Q ss_pred cCChhHHH-HHHHHhhcCCCeEEEEEecCC
Q 037961 111 WFDLPQFY-KQVKWVLKKPSGVIAAWTYTM 139 (262)
Q Consensus 111 ~~d~~~~l-~~~~r~Lk~pgG~l~i~~~~~ 139 (262)
...++ .+....+| ||++|+-....+
T Consensus 319 ---t~~iI~~e~~~~MK-pGAiLINvGr~d 344 (476)
T PTZ00075 319 ---NKDIITLEHMRRMK-NNAIVGNIGHFD 344 (476)
T ss_pred ---cccccCHHHHhccC-CCcEEEEcCCCc
Confidence 22344 47788899 999998755443
No 477
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=71.25 E-value=9.1 Score=30.42 Aligned_cols=44 Identities=25% Similarity=0.464 Sum_probs=30.9
Q ss_pred CCCCceeeEEEccccccCC-------------hhHHHHHHHHhhcCCCeEEEEEecCCC
Q 037961 95 ATQSSVDLVTIASALHWFD-------------LPQFYKQVKWVLKKPSGVIAAWTYTMP 140 (262)
Q Consensus 95 ~~~~~~D~V~~~~~~~~~d-------------~~~~l~~~~r~Lk~pgG~l~i~~~~~~ 140 (262)
+..+..|+|+.+.++|-+. .++++..+..+|+ |. .++||....|
T Consensus 46 l~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp-~~-allIW~tt~P 102 (183)
T cd01842 46 LEGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLP-IE-CLIVWNTAMP 102 (183)
T ss_pred ecCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCC-Cc-cEEEEecCCC
Confidence 4677899999999998442 3445666666665 55 7778876654
No 478
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=71.20 E-value=59 Score=27.06 Aligned_cols=97 Identities=18% Similarity=0.111 Sum_probs=57.7
Q ss_pred CCCCeEEEEc--CcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEcc
Q 037961 32 PKRNLAWDVG--TRSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIAS 107 (262)
Q Consensus 32 ~~~~~vlDvG--cG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~ 107 (262)
.++.++|=.| .+.|..+..+++. |.++++++.++...+.++...--.++....... ..+..+ .+...+|+++...
T Consensus 119 ~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~-~~~~~~d~v~~~~ 197 (303)
T cd08251 119 AKGEHILIQTATGGTGLMAVQLARLKGAEIYATASSDDKLEYLKQLGVPHVINYVEEDFEEEIMRL-TGGRGVDVVINTL 197 (303)
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHH-cCCCCceEEEECC
Confidence 4566665443 2346666666664 889999999998888876542112222211011 112222 2345689888542
Q ss_pred ccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 108 ALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 108 ~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
. ...+.+..+.|+ ++|+++.+.
T Consensus 198 ~------~~~~~~~~~~l~-~~g~~v~~~ 219 (303)
T cd08251 198 S------GEAIQKGLNCLA-PGGRYVEIA 219 (303)
T ss_pred c------HHHHHHHHHHhc-cCcEEEEEe
Confidence 2 356778889999 999988654
No 479
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=71.12 E-value=12 Score=30.16 Aligned_cols=79 Identities=18% Similarity=0.092 Sum_probs=50.8
Q ss_pred CcccHhHHHHHh----hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCChhH-
Q 037961 42 TRSGQAAASLAQ----IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDLPQ- 116 (262)
Q Consensus 42 cG~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~~~- 116 (262)
|-+|..+..+++ +|.+|+++--++.-+.. ++.+..++.|.+..... .-.-..||+|++++...|-+.+.
T Consensus 7 gAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~---~~~~~i~q~Difd~~~~---a~~l~g~DaVIsA~~~~~~~~~~~ 80 (211)
T COG2910 7 GASGKAGSRILKEALKRGHEVTAIVRNASKLAA---RQGVTILQKDIFDLTSL---ASDLAGHDAVISAFGAGASDNDEL 80 (211)
T ss_pred ecCchhHHHHHHHHHhCCCeeEEEEeChHhccc---cccceeecccccChhhh---HhhhcCCceEEEeccCCCCChhHH
Confidence 567777776654 69999999988775432 24666777763222111 11124599999998888775444
Q ss_pred ---HHHHHHHhhc
Q 037961 117 ---FYKQVKWVLK 126 (262)
Q Consensus 117 ---~l~~~~r~Lk 126 (262)
..+.+...|+
T Consensus 81 ~~k~~~~li~~l~ 93 (211)
T COG2910 81 HSKSIEALIEALK 93 (211)
T ss_pred HHHHHHHHHHHHh
Confidence 4556666777
No 480
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=70.85 E-value=58 Score=26.76 Aligned_cols=98 Identities=24% Similarity=0.208 Sum_probs=58.1
Q ss_pred CCCCeEEEEcC--cccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCC--ceEEeCCCCch-hhhhhccCCCCceeeEEE
Q 037961 32 PKRNLAWDVGT--RSGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPN--IRYQLTPTMSI-TELEQNVATQSSVDLVTI 105 (262)
Q Consensus 32 ~~~~~vlDvGc--G~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~ 105 (262)
.++..|+=.|. +.|..+..+++ .+.++++++.++..++.+++..- ...+....... ...... .+...+|+++.
T Consensus 103 ~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~vi~ 181 (288)
T smart00829 103 RPGESVLIHAAAGGVGQAAIQLAQHLGAEVFATAGSPEKRDFLRELGIPDDHIFSSRDLSFADEILRA-TGGRGVDVVLN 181 (288)
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCChhheeeCCCccHHHHHHHH-hCCCCcEEEEe
Confidence 46677776663 34666666665 48899999999998888765421 11121111000 111111 13345888884
Q ss_pred ccccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 106 ASALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 106 ~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
... ...+..+.+.|+ ++|+++.+..
T Consensus 182 ~~~------~~~~~~~~~~l~-~~g~~v~~g~ 206 (288)
T smart00829 182 SLA------GEFLDASLRCLA-PGGRFVEIGK 206 (288)
T ss_pred CCC------HHHHHHHHHhcc-CCcEEEEEcC
Confidence 322 245677889999 9999887553
No 481
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=70.71 E-value=21 Score=34.98 Aligned_cols=87 Identities=21% Similarity=0.158 Sum_probs=55.4
Q ss_pred CeEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----------------------CCceEEeCCCCchhh
Q 037961 35 NLAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIKL-----------------------PNIRYQLTPTMSITE 89 (262)
Q Consensus 35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----------------------~~~~~~~~~~~~~~~ 89 (262)
.+|.-||+|+ ...+..++..|.+|+.+|++++.++.+.+. .++.+. .+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-------~~ 386 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-------LD 386 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-------CC
Confidence 4688999998 345556677899999999999998876531 011111 11
Q ss_pred hhhccCCCCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961 90 LEQNVATQSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 90 ~~~~~~~~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
.+. -...|+|+-+- ..-+ -..++++++.++++ |+-.|+-
T Consensus 387 ~~~----~~~aDlViEav-~E~l~~K~~vf~~l~~~~~-~~~ilas 426 (715)
T PRK11730 387 YAG----FERVDVVVEAV-VENPKVKAAVLAEVEQKVR-EDTILAS 426 (715)
T ss_pred HHH----hcCCCEEEecc-cCcHHHHHHHHHHHHhhCC-CCcEEEE
Confidence 111 23578888542 2222 23448899999998 7766544
No 482
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=70.70 E-value=9.7 Score=32.82 Aligned_cols=41 Identities=12% Similarity=0.130 Sum_probs=35.0
Q ss_pred CCCCeEEEEcCcccHhHHHHHhhCCeEEEEcCCHHHHHHHh
Q 037961 32 PKRNLAWDVGTRSGQAAASLAQIYQHVIATDTSPKQLKFAI 72 (262)
Q Consensus 32 ~~~~~vlDvGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~ 72 (262)
+.+.+|+-+|+|.......+++.-++|.+||+++..++..+
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~ 102 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNR 102 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHH
Confidence 56778999999988788888888899999999999987654
No 483
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=70.39 E-value=69 Score=27.44 Aligned_cols=94 Identities=20% Similarity=0.257 Sum_probs=59.5
Q ss_pred CCeEEEEcC--cccHhHHHHHhh-C-CeEEEEcCCHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEccc
Q 037961 34 RNLAWDVGT--RSGQAAASLAQI-Y-QHVIATDTSPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIASA 108 (262)
Q Consensus 34 ~~~vlDvGc--G~G~~~~~l~~~-~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~~~ 108 (262)
+.+|+=.|+ +.|..+..+++. | .++++++.++...+.+++.. +.......... ..+.. ...+.+|+++....
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~i~~--~~~~~~d~vl~~~~ 226 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLTGLTVIATASRPESIAWVKELG-ADHVINHHQDLAEQLEA--LGIEPVDYIFCLTD 226 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcCCcEEEEEcCChhhHHHHHhcC-CcEEEeCCccHHHHHHh--hCCCCCCEEEEccC
Confidence 678888775 346666666664 7 89999999998888886542 22222111011 11111 12346898875322
Q ss_pred cccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 109 LHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 109 ~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
....+..+.+.|+ ++|+++.++
T Consensus 227 -----~~~~~~~~~~~l~-~~g~~v~~g 248 (336)
T cd08252 227 -----TDQHWDAMAELIA-PQGHICLIV 248 (336)
T ss_pred -----cHHHHHHHHHHhc-CCCEEEEec
Confidence 2457889999999 999998764
No 484
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=70.32 E-value=50 Score=25.82 Aligned_cols=106 Identities=15% Similarity=0.100 Sum_probs=59.9
Q ss_pred HHHHHHhhCCCCCeEEEEcCcccHhHHHH-HhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhcc-CCCCce
Q 037961 23 LFKLIASKTPKRNLAWDVGTRSGQAAASL-AQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNV-ATQSSV 100 (262)
Q Consensus 23 ~~~~l~~~~~~~~~vlDvGcG~G~~~~~l-~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 100 (262)
+.+.+.....+..+|+-|||=+-.....- .....++...|.+...-.... + .+..-| ....+.++ .-.++|
T Consensus 15 l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~~---~-~F~fyD---~~~p~~~~~~l~~~~ 87 (162)
T PF10237_consen 15 LARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFGG---D-EFVFYD---YNEPEELPEELKGKF 87 (162)
T ss_pred HHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcCC---c-ceEECC---CCChhhhhhhcCCCc
Confidence 34444444456788999998886555444 223668999999976543221 2 333333 01112222 115799
Q ss_pred eeEEEccccccCChh-HHHHHHHHhhcCCCeEEEEEe
Q 037961 101 DLVTIASALHWFDLP-QFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 101 D~V~~~~~~~~~d~~-~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
|+|++...+---+.. +...-+.-++| +++.+++.+
T Consensus 88 d~vv~DPPFl~~ec~~k~a~ti~~L~k-~~~kii~~T 123 (162)
T PF10237_consen 88 DVVVIDPPFLSEECLTKTAETIRLLLK-PGGKIILCT 123 (162)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhC-ccceEEEec
Confidence 999998888211333 33444444456 778777633
No 485
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.04 E-value=42 Score=27.81 Aligned_cols=74 Identities=14% Similarity=0.042 Sum_probs=43.0
Q ss_pred CCCeEEEEcCcccHhHHHHHh----hCCeEEEEcCCHHHHHHHhcCCCceEEeCC---CCchhhhhh--ccCCCCceeeE
Q 037961 33 KRNLAWDVGTRSGQAAASLAQ----IYQHVIATDTSPKQLKFAIKLPNIRYQLTP---TMSITELEQ--NVATQSSVDLV 103 (262)
Q Consensus 33 ~~~~vlDvGcG~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~D~V 103 (262)
....||=.||..|..+-.|+. .|+.|+++--+-+-........++.....| ..+....+. ...++++.|+.
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L 85 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLL 85 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEE
Confidence 456789999999987776654 588999887664433333322233333333 111111111 12478999998
Q ss_pred EEc
Q 037961 104 TIA 106 (262)
Q Consensus 104 ~~~ 106 (262)
+-+
T Consensus 86 ~NN 88 (289)
T KOG1209|consen 86 YNN 88 (289)
T ss_pred EcC
Confidence 864
No 486
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=69.95 E-value=17 Score=35.80 Aligned_cols=94 Identities=16% Similarity=0.115 Sum_probs=56.3
Q ss_pred CeEEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----------CCceEEeCC----CCch-hhhhhccCC
Q 037961 35 NLAWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIKL-----------PNIRYQLTP----TMSI-TELEQNVAT 96 (262)
Q Consensus 35 ~~vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~----~~~~-~~~~~~~~~ 96 (262)
.+|--||+|+ +..+..++..|.+|+..|++++.++.+.+. ..++-...+ .+.. .+.+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---- 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYSG---- 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH----
Confidence 5688899997 344556677899999999999999886531 011000000 0000 01111
Q ss_pred CCceeeEEEccccccC-ChhHHHHHHHHhhcCCCeEEEE
Q 037961 97 QSSVDLVTIASALHWF-DLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 97 ~~~~D~V~~~~~~~~~-d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
-...|+|+-+ .+.-+ -..++++++.++++ |+..|+-
T Consensus 412 ~~~aDlViEA-v~E~l~~K~~vf~~l~~~~~-~~~ilas 448 (737)
T TIGR02441 412 FKNADMVIEA-VFEDLSLKHKVIKEVEAVVP-PHCIIAS 448 (737)
T ss_pred hccCCeehhh-ccccHHHHHHHHHHHHhhCC-CCcEEEE
Confidence 2357888744 22223 24458999999999 8877765
No 487
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=69.92 E-value=63 Score=27.22 Aligned_cols=98 Identities=16% Similarity=0.125 Sum_probs=54.9
Q ss_pred CCCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCHHHHHHHhcCCCceEEeC-CCCchhhhhhccCCCCceeeEEEc
Q 037961 31 TPKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSPKQLKFAIKLPNIRYQLT-PTMSITELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 31 ~~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~D~V~~~ 106 (262)
..++..|+-.|| +.|..+..+++. |.++++++.+ ...+.+++.. +..... ... +........+.+|+|+..
T Consensus 141 ~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~-~~~~~~~~~g-~~~~~~~~~~---~~~~~~~~~~~~d~vi~~ 215 (319)
T cd08267 141 VKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST-RNAELVRSLG-ADEVIDYTTE---DFVALTAGGEKYDVIFDA 215 (319)
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH-HHHHHHHHcC-CCEeecCCCC---CcchhccCCCCCcEEEEC
Confidence 457788899997 357777777764 8899998854 6666665442 221111 110 010111234569999864
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEecC
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTYT 138 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~~ 138 (262)
..- ....... ....|+ ++|+++.+...
T Consensus 216 ~~~---~~~~~~~-~~~~l~-~~g~~i~~g~~ 242 (319)
T cd08267 216 VGN---SPFSLYR-ASLALK-PGGRYVSVGGG 242 (319)
T ss_pred CCc---hHHHHHH-hhhccC-CCCEEEEeccc
Confidence 331 1112222 223389 99999986543
No 488
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=69.05 E-value=15 Score=31.89 Aligned_cols=100 Identities=15% Similarity=0.209 Sum_probs=60.9
Q ss_pred CeEEEEcCcccHhHHHHHhhC----------------------CeEEEEcCCH--HHHHHHhc----C------------
Q 037961 35 NLAWDVGTRSGQAAASLAQIY----------------------QHVIATDTSP--KQLKFAIK----L------------ 74 (262)
Q Consensus 35 ~~vlDvGcG~G~~~~~l~~~~----------------------~~v~~vD~s~--~~~~~a~~----~------------ 74 (262)
.+||.||-|.|.=...++... -+++.||+.+ ..+..... .
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 689999999986544444322 2788999864 22222211 1
Q ss_pred -------CCceEEeCCCCch--hhhhhccCCCCceeeEEEccccccC------ChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 75 -------PNIRYQLTPTMSI--TELEQNVATQSSVDLVTIASALHWF------DLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 75 -------~~~~~~~~~~~~~--~~~~~~~~~~~~~D~V~~~~~~~~~------d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
-++.|.+.|.+.. .+...+ +...+.|+|+..+.++-+ ..-+++..+-.+++ ||-.|.|..
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~l-l~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~-~GslLLVvD 242 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSL-LGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICP-PGSLLLVVD 242 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHH-hccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcC-CCcEEEEEc
Confidence 2456666662222 222222 122368999988777633 34458999999999 888888854
No 489
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=68.73 E-value=9.7 Score=29.51 Aligned_cols=100 Identities=15% Similarity=0.121 Sum_probs=52.0
Q ss_pred EEEEcCcc--cHhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccC-C
Q 037961 37 AWDVGTRS--GQAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWF-D 113 (262)
Q Consensus 37 vlDvGcG~--G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~-d 113 (262)
|-=||+|. ...+..|++.+.+|++.|.+++-++...+. ++..... ..+. -...|+|++... .- .
T Consensus 4 Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~-g~~~~~s-------~~e~---~~~~dvvi~~v~--~~~~ 70 (163)
T PF03446_consen 4 IGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA-GAEVADS-------PAEA---AEQADVVILCVP--DDDA 70 (163)
T ss_dssp EEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT-TEEEESS-------HHHH---HHHBSEEEE-SS--SHHH
T ss_pred EEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh-hhhhhhh-------hhhH---hhcccceEeecc--cchh
Confidence 44467764 234455666799999999999888877654 3333322 1111 123488886422 11 1
Q ss_pred hhHHHHH--HHHhhcCCCeEEEEEecCCCcccHHHHHhh
Q 037961 114 LPQFYKQ--VKWVLKKPSGVIAAWTYTMPEINESVGAVF 150 (262)
Q Consensus 114 ~~~~l~~--~~r~Lk~pgG~l~i~~~~~~~~~~~~~~~~ 150 (262)
.+.++.. +...|+ +|.+++-.+...+....++.+..
T Consensus 71 v~~v~~~~~i~~~l~-~g~iiid~sT~~p~~~~~~~~~~ 108 (163)
T PF03446_consen 71 VEAVLFGENILAGLR-PGKIIIDMSTISPETSRELAERL 108 (163)
T ss_dssp HHHHHHCTTHGGGS--TTEEEEE-SS--HHHHHHHHHHH
T ss_pred hhhhhhhhHHhhccc-cceEEEecCCcchhhhhhhhhhh
Confidence 2335555 677777 67777655544444334444433
No 490
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=67.33 E-value=74 Score=27.38 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=53.0
Q ss_pred CCCCeEEEEcC--cccHhHHHHHhh-CCeEEEEcCCH----HHHHHHhcCCCceEEeCCCC---ch-hhhhhccCCCCce
Q 037961 32 PKRNLAWDVGT--RSGQAAASLAQI-YQHVIATDTSP----KQLKFAIKLPNIRYQLTPTM---SI-TELEQNVATQSSV 100 (262)
Q Consensus 32 ~~~~~vlDvGc--G~G~~~~~l~~~-~~~v~~vD~s~----~~~~~a~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~ 100 (262)
.++.+||=.|+ +.|.++..+++. +.+++++.-++ .-.+.+++...-.++..... .. ..+..+. +. .+
T Consensus 145 ~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~-~~-~~ 222 (341)
T cd08290 145 QPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATELLKSAP-GG-RP 222 (341)
T ss_pred CCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHHHHHHHc-CC-Cc
Confidence 56778887775 357777777764 77776655444 33455544321122222111 11 1111121 22 68
Q ss_pred eeEEEccccccCChhHHHHHHHHhhcCCCeEEEEEe
Q 037961 101 DLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 101 D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
|+|+-... ...+.++.+.|+ ++|+++...
T Consensus 223 d~vld~~g------~~~~~~~~~~l~-~~G~~v~~g 251 (341)
T cd08290 223 KLALNCVG------GKSATELARLLS-PGGTMVTYG 251 (341)
T ss_pred eEEEECcC------cHhHHHHHHHhC-CCCEEEEEe
Confidence 99985433 134556789999 999998755
No 491
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=67.21 E-value=29 Score=31.59 Aligned_cols=92 Identities=20% Similarity=0.106 Sum_probs=53.7
Q ss_pred eEEEEcCcccHhHHHHHh----hCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961 36 LAWDVGTRSGQAAASLAQ----IYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW 111 (262)
Q Consensus 36 ~vlDvGcG~G~~~~~l~~----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~ 111 (262)
.|+=+|| |..+..++. .+.+|+++|.+++.++.+++..++.+..++.......+... -..+|.|++...=
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~--~~~a~~vi~~~~~-- 75 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAG--AEDADLLIAVTDS-- 75 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcC--CCcCCEEEEecCC--
Confidence 3566676 555555443 58899999999999888776446777777722222333332 3457888765331
Q ss_pred CChhHHHHHHHHhhcCCCeEEEE
Q 037961 112 FDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 112 ~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
.+....+....+-+. |.-.+++
T Consensus 76 ~~~n~~~~~~~r~~~-~~~~ii~ 97 (453)
T PRK09496 76 DETNMVACQIAKSLF-GAPTTIA 97 (453)
T ss_pred hHHHHHHHHHHHHhc-CCCeEEE
Confidence 122334445556664 4444433
No 492
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=66.66 E-value=56 Score=27.95 Aligned_cols=91 Identities=15% Similarity=0.144 Sum_probs=53.8
Q ss_pred CCCCCeEEEEcC-c-ccHhHHHHHh-hCCeEEEEcCCHHHHHHHhcCCCce-EEeCCCCchhhhhhccCCCCceeeEEEc
Q 037961 31 TPKRNLAWDVGT-R-SGQAAASLAQ-IYQHVIATDTSPKQLKFAIKLPNIR-YQLTPTMSITELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 31 ~~~~~~vlDvGc-G-~G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~D~V~~~ 106 (262)
..++.++|=+|+ | .|..+..+++ .|.++++++.+ +.+++. ++. ++..+.. ...+..+. +.+|+|+..
T Consensus 160 ~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~~~----~~~~~~-g~~~~~~~~~~-~~~l~~~~---~~~d~vl~~ 230 (325)
T cd08264 160 LGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVSRK----DWLKEF-GADEVVDYDEV-EEKVKEIT---KMADVVINS 230 (325)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeHH----HHHHHh-CCCeeecchHH-HHHHHHHh---CCCCEEEEC
Confidence 356788888886 3 4666666666 48888888632 333332 121 1111110 11222222 468998854
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.. ...+.+..+.|+ ++|+++....
T Consensus 231 ~g------~~~~~~~~~~l~-~~g~~v~~g~ 254 (325)
T cd08264 231 LG------SSFWDLSLSVLG-RGGRLVTFGT 254 (325)
T ss_pred CC------HHHHHHHHHhhc-cCCEEEEEec
Confidence 22 257889999999 9999997553
No 493
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=66.60 E-value=51 Score=27.84 Aligned_cols=100 Identities=10% Similarity=-0.061 Sum_probs=57.3
Q ss_pred CCeEEEEcCcccHhHHHHHhh-CCeEEEEcCCHHHHHHHhc--------CCCceEEeCC-CCch-hhhhhccCCCCceee
Q 037961 34 RNLAWDVGTRSGQAAASLAQI-YQHVIATDTSPKQLKFAIK--------LPNIRYQLTP-TMSI-TELEQNVATQSSVDL 102 (262)
Q Consensus 34 ~~~vlDvGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~--------~~~~~~~~~~-~~~~-~~~~~~~~~~~~~D~ 102 (262)
...|+.+|||-=.-...+... +.+++=+|..+.+-...+. ..+..++..| .... ..+..-++....--+
T Consensus 82 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 82 IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred CcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 346899999987666655432 3455556654332222221 1344555555 2000 111122343445567
Q ss_pred EEEccccccCChhH---HHHHHHHhhcCCCeEEEE
Q 037961 103 VTIASALHWFDLPQ---FYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 103 V~~~~~~~~~d~~~---~l~~~~r~Lk~pgG~l~i 134 (262)
+++-..+.+++++. +++.+.+... ||+.+++
T Consensus 162 ~i~EGvl~YL~~~~v~~ll~~i~~~~~-~gs~l~~ 195 (260)
T TIGR00027 162 WLWEGLLMYLTEEAVDALLAFIAELSA-PGSRLAF 195 (260)
T ss_pred eeecchhhcCCHHHHHHHHHHHHHhCC-CCcEEEE
Confidence 78888888996555 7788888877 7888876
No 494
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=66.15 E-value=10 Score=29.64 Aligned_cols=42 Identities=26% Similarity=0.342 Sum_probs=30.5
Q ss_pred CCCeEEEEcCcc-cHhHHHHHh-hCCeEEEEcCCHHHHHHHhcC
Q 037961 33 KRNLAWDVGTRS-GQAAASLAQ-IYQHVIATDTSPKQLKFAIKL 74 (262)
Q Consensus 33 ~~~~vlDvGcG~-G~~~~~l~~-~~~~v~~vD~s~~~~~~a~~~ 74 (262)
++..|+=+|.|. |..+..++. .|++++..|..+..++.....
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~ 62 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESL 62 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHT
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcc
Confidence 457789999886 666666655 599999999999988877654
No 495
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=66.09 E-value=84 Score=26.81 Aligned_cols=98 Identities=17% Similarity=0.117 Sum_probs=52.4
Q ss_pred CCCCeEEEEcCc-ccHhHHHHHhh-CCeEEEEcC--CHHHHHHHhcCCCceEEeCCCCch-hhhhhccCCCCceeeEEEc
Q 037961 32 PKRNLAWDVGTR-SGQAAASLAQI-YQHVIATDT--SPKQLKFAIKLPNIRYQLTPTMSI-TELEQNVATQSSVDLVTIA 106 (262)
Q Consensus 32 ~~~~~vlDvGcG-~G~~~~~l~~~-~~~v~~vD~--s~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~D~V~~~ 106 (262)
.++..||=.|+| .|..+..+++. +.+|+.+.. ++...+.+++. ++.......... ...... .....+|+++-.
T Consensus 163 ~~g~~vlI~g~g~~g~~~~~la~~~G~~v~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~l~~~-~~~~~vd~vld~ 240 (306)
T cd08258 163 RPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKEL-GADAVNGGEEDLAELVNEI-TDGDGADVVIEC 240 (306)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHh-CCcccCCCcCCHHHHHHHH-cCCCCCCEEEEC
Confidence 355565555654 35555556654 778877633 34444444443 222111111001 111122 234568998854
Q ss_pred cccccCChhHHHHHHHHhhcCCCeEEEEEec
Q 037961 107 SALHWFDLPQFYKQVKWVLKKPSGVIAAWTY 137 (262)
Q Consensus 107 ~~~~~~d~~~~l~~~~r~Lk~pgG~l~i~~~ 137 (262)
.. ....+....+.|+ ++|+++.+..
T Consensus 241 ~g-----~~~~~~~~~~~l~-~~G~~v~~g~ 265 (306)
T cd08258 241 SG-----AVPALEQALELLR-KGGRIVQVGI 265 (306)
T ss_pred CC-----ChHHHHHHHHHhh-cCCEEEEEcc
Confidence 21 2457888999999 9999997554
No 496
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=65.90 E-value=13 Score=29.52 Aligned_cols=86 Identities=26% Similarity=0.290 Sum_probs=51.2
Q ss_pred EEEEcCcc-c-HhHHHHHhhCCeEEEEcCCHHHHHHHhcC-----------------------CCceEEeCCCCchhhhh
Q 037961 37 AWDVGTRS-G-QAAASLAQIYQHVIATDTSPKQLKFAIKL-----------------------PNIRYQLTPTMSITELE 91 (262)
Q Consensus 37 vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-----------------------~~~~~~~~~~~~~~~~~ 91 (262)
|.=+|+|+ | ..+..++..|.+|+.+|.+++.++.+++. .++.+. .+++
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~-------~dl~ 74 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFT-------TDLE 74 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEE-------SSGG
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccc-------cCHH
Confidence 45688886 3 44555667799999999999999877641 122222 1222
Q ss_pred hccCCCCceeeEEEccccccCChhHHHHHHHHhhcCCCeEEEE
Q 037961 92 QNVATQSSVDLVTIASALHWFDLPQFYKQVKWVLKKPSGVIAA 134 (262)
Q Consensus 92 ~~~~~~~~~D~V~~~~~~~~~d~~~~l~~~~r~Lk~pgG~l~i 134 (262)
.. . ..|+|+-+-.=..--..++++++.+++. |+-.|+.
T Consensus 75 ~~---~-~adlViEai~E~l~~K~~~~~~l~~~~~-~~~ilas 112 (180)
T PF02737_consen 75 EA---V-DADLVIEAIPEDLELKQELFAELDEICP-PDTILAS 112 (180)
T ss_dssp GG---C-TESEEEE-S-SSHHHHHHHHHHHHCCS--TTSEEEE
T ss_pred HH---h-hhheehhhccccHHHHHHHHHHHHHHhC-CCceEEe
Confidence 22 1 5788885432211123458999999998 7877766
No 497
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=65.68 E-value=63 Score=27.76 Aligned_cols=90 Identities=16% Similarity=0.086 Sum_probs=50.6
Q ss_pred EEEEcCcc-c-HhHHHHHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEccccccCCh
Q 037961 37 AWDVGTRS-G-QAAASLAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHWFDL 114 (262)
Q Consensus 37 vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~~d~ 114 (262)
|-=||+|. | ..+..|++.+.+|++.|.+++-++.+.+. ++.... +.++..-.....|+|+....-. -..
T Consensus 3 Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~-g~~~~~-------~~~e~~~~~~~~dvvi~~v~~~-~~~ 73 (301)
T PRK09599 3 LGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEE-GATGAD-------SLEELVAKLPAPRVVWLMVPAG-EIT 73 (301)
T ss_pred EEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC-CCeecC-------CHHHHHhhcCCCCEEEEEecCC-cHH
Confidence 45577776 2 35566777889999999999888776543 333221 1111110001247777643211 023
Q ss_pred hHHHHHHHHhhcCCCeEEEEEe
Q 037961 115 PQFYKQVKWVLKKPSGVIAAWT 136 (262)
Q Consensus 115 ~~~l~~~~r~Lk~pgG~l~i~~ 136 (262)
..++..+...|+ +|.+++-.+
T Consensus 74 ~~v~~~l~~~l~-~g~ivid~s 94 (301)
T PRK09599 74 DATIDELAPLLS-PGDIVIDGG 94 (301)
T ss_pred HHHHHHHHhhCC-CCCEEEeCC
Confidence 446677777888 765554433
No 498
>PRK06182 short chain dehydrogenase; Validated
Probab=65.36 E-value=80 Score=26.29 Aligned_cols=75 Identities=13% Similarity=0.136 Sum_probs=43.7
Q ss_pred CCeEEEEcCcccHhHHH----HHhhCCeEEEEcCCHHHHHHHhcCCCceEEeCCCCchhhhhhcc----CCCCceeeEEE
Q 037961 34 RNLAWDVGTRSGQAAAS----LAQIYQHVIATDTSPKQLKFAIKLPNIRYQLTPTMSITELEQNV----ATQSSVDLVTI 105 (262)
Q Consensus 34 ~~~vlDvGcG~G~~~~~----l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~D~V~~ 105 (262)
+.++|=.|++.| .+.. +++.|.+|++++-+++-++.... .++.++..|..+..+.+..- -..+.+|+|+.
T Consensus 3 ~k~vlItGasgg-iG~~la~~l~~~G~~V~~~~r~~~~l~~~~~-~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~ 80 (273)
T PRK06182 3 KKVALVTGASSG-IGKATARRLAAQGYTVYGAARRVDKMEDLAS-LGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVN 80 (273)
T ss_pred CCEEEEECCCCh-HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-CCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence 356777786543 3443 44568999999998877655433 24667766621122222211 11346899997
Q ss_pred ccccc
Q 037961 106 ASALH 110 (262)
Q Consensus 106 ~~~~~ 110 (262)
+.+..
T Consensus 81 ~ag~~ 85 (273)
T PRK06182 81 NAGYG 85 (273)
T ss_pred CCCcC
Confidence 76653
No 499
>PRK08655 prephenate dehydrogenase; Provisional
Probab=64.93 E-value=27 Score=32.04 Aligned_cols=84 Identities=24% Similarity=0.244 Sum_probs=48.0
Q ss_pred eEEEEc-Ccc-c-HhHHHHHhhCCeEEEEcCCHHHHH-HHhcCCCceEEeCCCCchhhhhhccCCCCceeeEEEcccccc
Q 037961 36 LAWDVG-TRS-G-QAAASLAQIYQHVIATDTSPKQLK-FAIKLPNIRYQLTPTMSITELEQNVATQSSVDLVTIASALHW 111 (262)
Q Consensus 36 ~vlDvG-cG~-G-~~~~~l~~~~~~v~~vD~s~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~V~~~~~~~~ 111 (262)
+|.=+| +|. | .++..+...|.+|+++|.++..+. .+.+. ++.+. . +.... -...|+|+.+-....
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~-gv~~~-~------~~~e~---~~~aDvVIlavp~~~ 70 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL-GVEYA-N------DNIDA---AKDADIVIISVPINV 70 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc-CCeec-c------CHHHH---hccCCEEEEecCHHH
Confidence 355566 563 3 355556667889999999987753 34332 33221 1 11111 124699887655432
Q ss_pred CChhHHHHHHHHhhcCCCeEEE
Q 037961 112 FDLPQFYKQVKWVLKKPSGVIA 133 (262)
Q Consensus 112 ~d~~~~l~~~~r~Lk~pgG~l~ 133 (262)
...+++++...++ +|..++
T Consensus 71 --~~~vl~~l~~~l~-~~~iVi 89 (437)
T PRK08655 71 --TEDVIKEVAPHVK-EGSLLM 89 (437)
T ss_pred --HHHHHHHHHhhCC-CCCEEE
Confidence 2456777777787 666544
No 500
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=64.82 E-value=16 Score=29.08 Aligned_cols=109 Identities=21% Similarity=0.216 Sum_probs=54.6
Q ss_pred EEEEcCcc-c-HhHHHHHhhCCeEEEEcCCHHHHHHHhcC------CC-----------ceEEeCCCCchhhhhhccCCC
Q 037961 37 AWDVGTRS-G-QAAASLAQIYQHVIATDTSPKQLKFAIKL------PN-----------IRYQLTPTMSITELEQNVATQ 97 (262)
Q Consensus 37 vlDvGcG~-G-~~~~~l~~~~~~v~~vD~s~~~~~~a~~~------~~-----------~~~~~~~~~~~~~~~~~~~~~ 97 (262)
|-=+|.|- | ..+..++..|.+|+|+|++++-++..++- ++ -++... .+.+.. -
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-----~~~~~a---i 74 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-----TDIEEA---I 74 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-----SEHHHH---H
T ss_pred EEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-----hhhhhh---h
Confidence 44566664 4 23445667899999999999999887752 10 011110 011110 1
Q ss_pred CceeeEEEccccccC-----C---hhHHHHHHHHhhcCCCeEEEE-EecCCCcccHHHHHhhcccc
Q 037961 98 SSVDLVTIASALHWF-----D---LPQFYKQVKWVLKKPSGVIAA-WTYTMPEINESVGAVFKPFD 154 (262)
Q Consensus 98 ~~~D~V~~~~~~~~~-----d---~~~~l~~~~r~Lk~pgG~l~i-~~~~~~~~~~~~~~~~~~~~ 154 (262)
...|+++..-.-..- | ..++++.+.+.|+ +|-.+++ .+.......+.+..++++..
T Consensus 75 ~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~-~~~lvV~~STvppGtt~~~~~~ile~~~ 139 (185)
T PF03721_consen 75 KDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLR-PGDLVVIESTVPPGTTEELLKPILEKRS 139 (185)
T ss_dssp HH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHC-SCEEEEESSSSSTTHHHHHHHHHHHHHC
T ss_pred hccceEEEecCCCccccCCccHHHHHHHHHHHHHHHh-hcceEEEccEEEEeeehHhhhhhhhhhc
Confidence 235777654332211 2 4568999999999 7666666 22223332335555665543
Done!