Query 037964
Match_columns 202
No_of_seqs 102 out of 1095
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 06:11:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037964.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037964hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 1.2E-18 2.7E-23 155.5 8.6 193 3-200 149-366 (968)
2 PLN00113 leucine-rich repeat r 99.8 2E-18 4.3E-23 154.2 8.4 195 2-201 172-391 (968)
3 PLN03210 Resistant to P. syrin 99.5 8.9E-14 1.9E-18 126.1 9.0 190 5-201 600-836 (1153)
4 KOG0444 Cytoskeletal regulator 99.5 3.9E-16 8.5E-21 128.5 -5.9 159 2-176 134-326 (1255)
5 PLN03210 Resistant to P. syrin 99.4 8E-13 1.7E-17 120.0 10.1 82 116-202 824-905 (1153)
6 KOG0472 Leucine-rich repeat pr 99.4 1.1E-15 2.3E-20 119.9 -8.5 180 3-199 100-284 (565)
7 KOG4194 Membrane glycoprotein 99.4 5.9E-14 1.3E-18 114.8 1.1 192 3-200 158-375 (873)
8 KOG4194 Membrane glycoprotein 99.4 1.5E-13 3.3E-18 112.4 2.8 142 3-153 134-281 (873)
9 KOG0617 Ras suppressor protein 99.4 5.7E-15 1.2E-19 103.8 -5.7 161 13-187 29-193 (264)
10 KOG0444 Cytoskeletal regulator 99.3 7E-14 1.5E-18 115.5 -1.7 184 7-199 93-300 (1255)
11 KOG0472 Leucine-rich repeat pr 99.3 7E-15 1.5E-19 115.3 -8.2 182 2-199 122-306 (565)
12 KOG4237 Extracellular matrix p 99.3 2.1E-13 4.5E-18 106.8 -0.3 192 3-200 76-356 (498)
13 cd00116 LRR_RI Leucine-rich re 99.1 1.1E-11 2.3E-16 97.8 1.3 162 10-177 74-261 (319)
14 KOG0618 Serine/threonine phosp 99.1 7.6E-12 1.6E-16 107.0 -2.4 84 116-201 382-487 (1081)
15 KOG0617 Ras suppressor protein 99.1 1.3E-12 2.8E-17 92.0 -6.0 142 1-153 40-185 (264)
16 cd00116 LRR_RI Leucine-rich re 99.1 4.6E-11 1E-15 94.1 1.6 185 9-201 43-261 (319)
17 PRK15370 E3 ubiquitin-protein 99.0 8.3E-10 1.8E-14 95.7 5.4 39 4-47 188-226 (754)
18 PRK15387 E3 ubiquitin-protein 99.0 1.6E-09 3.5E-14 93.9 7.0 35 166-201 422-456 (788)
19 KOG2120 SCF ubiquitin ligase, 98.9 3.3E-11 7.2E-16 91.7 -4.4 181 17-200 185-373 (419)
20 PRK15370 E3 ubiquitin-protein 98.9 3.4E-09 7.4E-14 92.0 6.2 171 1-201 206-378 (754)
21 PF14580 LRR_9: Leucine-rich r 98.9 5E-10 1.1E-14 80.5 0.8 89 3-98 6-97 (175)
22 KOG4658 Apoptotic ATPase [Sign 98.8 1.1E-08 2.4E-13 90.2 7.3 60 13-73 567-628 (889)
23 KOG4237 Extracellular matrix p 98.8 4.9E-10 1.1E-14 88.2 -1.0 87 84-178 269-358 (498)
24 KOG0618 Serine/threonine phosp 98.8 2.1E-10 4.5E-15 98.5 -3.4 171 17-195 241-435 (1081)
25 PRK15387 E3 ubiquitin-protein 98.8 3.5E-08 7.5E-13 85.7 9.0 41 2-48 209-249 (788)
26 KOG4658 Apoptotic ATPase [Sign 98.8 4.1E-09 9E-14 92.9 3.2 177 3-183 581-787 (889)
27 KOG3207 Beta-tubulin folding c 98.7 3.2E-09 7E-14 84.5 1.3 128 63-197 197-333 (505)
28 KOG3207 Beta-tubulin folding c 98.7 1.8E-09 4E-14 85.9 -0.5 84 116-200 221-311 (505)
29 PF14580 LRR_9: Leucine-rich r 98.7 3.2E-09 7E-14 76.3 0.5 61 116-177 63-124 (175)
30 COG4886 Leucine-rich repeat (L 98.6 1.1E-07 2.4E-12 77.3 5.6 173 10-199 109-286 (394)
31 PF13855 LRR_8: Leucine rich r 98.5 1.2E-07 2.5E-12 56.3 3.5 60 117-177 1-60 (61)
32 KOG1909 Ran GTPase-activating 98.4 5.7E-08 1.2E-12 75.5 1.2 188 11-200 24-280 (382)
33 PLN03150 hypothetical protein; 98.4 2.2E-07 4.8E-12 79.9 4.7 107 65-180 420-529 (623)
34 KOG1909 Ran GTPase-activating 98.4 1.2E-07 2.6E-12 73.7 1.7 186 11-201 86-309 (382)
35 COG4886 Leucine-rich repeat (L 98.4 1.8E-07 4E-12 76.1 2.9 160 2-177 124-288 (394)
36 PLN03150 hypothetical protein; 98.4 4.8E-07 1E-11 77.8 5.5 102 19-128 420-526 (623)
37 KOG1259 Nischarin, modulator o 98.3 1.5E-07 3.2E-12 72.4 -0.5 107 59-177 303-410 (490)
38 KOG0532 Leucine-rich repeat (L 98.2 2.6E-08 5.6E-13 82.0 -5.1 135 3-153 107-246 (722)
39 KOG2120 SCF ubiquitin ligase, 98.2 1.1E-07 2.4E-12 72.9 -2.1 163 11-177 204-374 (419)
40 PF13855 LRR_8: Leucine rich r 98.2 1.6E-06 3.4E-11 51.4 3.1 41 111-152 20-60 (61)
41 KOG1259 Nischarin, modulator o 98.1 1.4E-06 3E-11 67.1 1.6 128 15-154 282-412 (490)
42 KOG0532 Leucine-rich repeat (L 98.0 7.4E-07 1.6E-11 73.7 -0.9 134 2-149 129-268 (722)
43 KOG3665 ZYG-1-like serine/thre 97.9 1.9E-06 4.1E-11 74.6 -0.9 35 63-98 148-182 (699)
44 KOG1859 Leucine-rich repeat pr 97.7 7.2E-07 1.6E-11 75.8 -6.3 152 10-177 102-290 (1096)
45 COG5238 RNA1 Ran GTPase-activa 97.7 2.2E-05 4.8E-10 59.8 2.0 88 12-99 25-130 (388)
46 KOG3665 ZYG-1-like serine/thre 97.6 3.6E-05 7.8E-10 66.8 2.6 126 63-199 122-259 (699)
47 KOG0531 Protein phosphatase 1, 97.5 1.2E-05 2.6E-10 66.0 -1.0 166 2-177 103-288 (414)
48 KOG0531 Protein phosphatase 1, 97.4 1.1E-05 2.4E-10 66.2 -3.0 60 13-74 91-151 (414)
49 PF12799 LRR_4: Leucine Rich r 97.4 0.00021 4.6E-09 39.2 3.0 37 117-154 1-37 (44)
50 KOG2982 Uncharacterized conser 97.4 0.00012 2.5E-09 56.6 2.4 86 61-152 69-157 (418)
51 KOG2982 Uncharacterized conser 97.3 0.0001 2.2E-09 56.9 1.8 164 11-180 91-263 (418)
52 KOG1644 U2-associated snRNP A' 97.2 0.00067 1.5E-08 49.6 5.0 82 116-198 63-148 (233)
53 PF12799 LRR_4: Leucine Rich r 97.2 0.00033 7.1E-09 38.4 2.1 39 141-182 1-39 (44)
54 KOG1859 Leucine-rich repeat pr 97.0 2.5E-05 5.5E-10 66.8 -4.9 123 64-201 165-290 (1096)
55 PRK15386 type III secretion pr 97.0 0.0046 1E-07 50.4 8.0 135 13-176 48-187 (426)
56 KOG2739 Leucine-rich acidic nu 96.9 0.00021 4.5E-09 54.0 -0.5 107 38-149 40-151 (260)
57 KOG1644 U2-associated snRNP A' 96.6 0.0034 7.4E-08 46.0 4.1 37 59-97 60-96 (233)
58 KOG4579 Leucine-rich repeat (L 96.6 0.00027 5.9E-09 48.6 -1.5 76 17-97 53-131 (177)
59 COG5238 RNA1 Ran GTPase-activa 96.4 0.0031 6.7E-08 48.4 2.8 37 117-153 185-226 (388)
60 KOG4341 F-box protein containi 96.2 0.0012 2.6E-08 53.2 0.0 85 116-200 345-436 (483)
61 KOG2123 Uncharacterized conser 96.2 0.0015 3.2E-08 50.3 0.2 90 3-96 28-124 (388)
62 KOG2739 Leucine-rich acidic nu 96.1 0.0034 7.4E-08 47.5 1.9 61 116-177 64-127 (260)
63 KOG4579 Leucine-rich repeat (L 96.1 0.00029 6.4E-09 48.5 -3.4 61 116-178 52-112 (177)
64 KOG4341 F-box protein containi 96.0 0.00029 6.3E-09 56.6 -4.3 62 13-74 160-227 (483)
65 KOG2123 Uncharacterized conser 96.0 0.00027 5.8E-09 54.2 -4.4 60 116-177 40-99 (388)
66 PRK15386 type III secretion pr 96.0 0.017 3.6E-07 47.3 5.5 32 166-200 156-187 (426)
67 PF00560 LRR_1: Leucine Rich R 95.7 0.0086 1.9E-07 27.4 1.7 21 18-39 1-21 (22)
68 KOG1947 Leucine rich repeat pr 95.4 0.0016 3.4E-08 54.2 -2.4 136 61-199 186-330 (482)
69 KOG1947 Leucine rich repeat pr 95.3 0.0033 7.2E-08 52.2 -0.9 37 62-98 268-304 (482)
70 KOG3864 Uncharacterized conser 95.1 0.00094 2E-08 48.8 -4.2 83 119-201 103-187 (221)
71 PF13306 LRR_5: Leucine rich r 94.7 0.047 1E-06 36.8 3.6 82 11-97 6-89 (129)
72 KOG3864 Uncharacterized conser 94.3 0.014 3E-07 42.8 0.4 83 65-152 103-187 (221)
73 PF13504 LRR_7: Leucine rich r 92.6 0.12 2.6E-06 21.9 1.7 14 167-181 2-15 (17)
74 smart00369 LRR_TYP Leucine-ric 90.1 0.24 5.2E-06 23.3 1.6 22 116-137 1-22 (26)
75 smart00370 LRR Leucine-rich re 90.1 0.24 5.2E-06 23.3 1.6 22 116-137 1-22 (26)
76 PF13516 LRR_6: Leucine Rich r 87.4 0.35 7.6E-06 22.3 1.1 23 62-86 1-23 (24)
77 smart00367 LRR_CC Leucine-rich 86.7 0.38 8.3E-06 22.7 1.0 14 189-202 1-14 (26)
78 KOG0473 Leucine-rich repeat pr 82.4 0.027 5.9E-07 42.4 -6.1 90 5-99 29-121 (326)
79 PF13306 LRR_5: Leucine rich r 81.0 1.9 4.1E-05 28.8 2.9 33 116-149 57-89 (129)
80 KOG3763 mRNA export factor TAP 74.7 1.4 3E-05 37.4 0.9 81 116-196 217-307 (585)
81 smart00368 LRR_RI Leucine rich 66.2 1.4 3.1E-05 21.2 -0.5 14 118-131 3-16 (28)
82 smart00365 LRR_SD22 Leucine-ri 62.1 6.6 0.00014 18.6 1.4 14 117-130 2-15 (26)
83 smart00364 LRR_BAC Leucine-ric 61.0 6.4 0.00014 18.7 1.3 16 117-132 2-17 (26)
84 KOG0473 Leucine-rich repeat pr 58.5 0.55 1.2E-05 35.6 -4.0 68 5-74 53-122 (326)
85 KOG3763 mRNA export factor TAP 46.7 7.2 0.00016 33.3 0.3 63 139-201 216-281 (585)
86 KOG4308 LRR-containing protein 36.3 2.1 4.5E-05 36.2 -4.4 37 117-153 262-302 (478)
87 PF05725 FNIP: FNIP Repeat; I 25.5 1.2E+02 0.0025 16.0 3.0 31 166-199 12-43 (44)
88 TIGR00864 PCC polycystin catio 24.4 48 0.001 34.4 1.8 16 116-131 18-33 (2740)
89 smart00446 LRRcap occurring C- 24.0 28 0.0006 16.5 0.1 13 59-71 9-21 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=1.2e-18 Score=155.54 Aligned_cols=193 Identities=22% Similarity=0.269 Sum_probs=119.0
Q ss_pred CCccc-cccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCc--h-hHHHcCcCCccceeeEEeecCchH
Q 037964 3 LSFID-HTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSS--C-TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 3 ~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~--~-~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
++.+. .+|.+++++++|++|++++|.....+|..++++++|++|+...+.. . |.+ ++++++|+.|++++|. ..
T Consensus 149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~--l~ 225 (968)
T PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNN--LS 225 (968)
T ss_pred CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCc--cC
Confidence 44443 5677788888888888887555667777777777777776544432 2 555 7777777777777776 55
Q ss_pred HHHHHHhccCCCccEEEeecCcc------hhh-c------------hhccc--ccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 79 SVLSKSLCELRCLDSLKLVNESN------MLG-I------------LQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~------~~~-~------------~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
+.+|..++++++|+.|+++++.- .+. + +.+.+ ++.. +++|+.|++++|.+.+..+..+
T Consensus 226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh-ccCcCEEECcCCeeccCCChhH
Confidence 56666777777777777765310 000 0 11111 3344 5666666666666665555666
Q ss_pred cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecC
Q 037964 138 EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c 200 (202)
.++++|+.|++++|.+.+.. +.....+++|+.|++++|.....++...+.+++|+.|++++|
T Consensus 305 ~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n 366 (968)
T PLN00113 305 IQLQNLEILHLFSNNFTGKI-PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTN 366 (968)
T ss_pred cCCCCCcEEECCCCccCCcC-ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCC
Confidence 66666777776666554432 333455677777777777633345555556677777777665
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.75 E-value=2e-18 Score=154.23 Aligned_cols=195 Identities=22% Similarity=0.214 Sum_probs=141.8
Q ss_pred CCCcc-ccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccC--ch-hHHHcCcCCccceeeEEeecCch
Q 037964 2 PLSFI-DHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLS--SC-TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 2 ~~~~~-~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~--~~-~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
.++.+ +.+|.+++++++|++|++++|.....+|..++.+.+|++|+...+. +. |.+ ++++++|++|++++|. .
T Consensus 172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~--l 248 (968)
T PLN00113 172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNN--L 248 (968)
T ss_pred ccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCce--e
Confidence 34444 3577788888888888888855566777778888888887754443 22 556 7778888888887776 5
Q ss_pred HHHHHHHhccCCCccEEEeecCc---c---hhh----c---------hhccc--ccccCCCCccEEEeeCCCCCCCCCcc
Q 037964 78 QSVLSKSLCELRCLDSLKLVNES---N---MLG----I---------LQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPT 136 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~---~---~~~----~---------~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~ 136 (202)
.+.+|..++++++|+.|+++.+. . .+. + +.+.+ ++.. +++|+.|++.+|.+.+..+..
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcC-CCCCcEEECCCCccCCcCChh
Confidence 56677777777777777776531 1 110 0 22222 4667 899999999999999888888
Q ss_pred ccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 137 LEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 137 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
+..+++|+.|+++.|.+.+.. +...+.+++|+.|++++|.....++.....+++|+.|++.+|.
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~-p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~ 391 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEI-PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNS 391 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcC-ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCE
Confidence 999999999999988886543 5556778999999999998444555555667889999998763
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.49 E-value=8.9e-14 Score=126.10 Aligned_cols=190 Identities=19% Similarity=0.164 Sum_probs=93.1
Q ss_pred ccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHH
Q 037964 5 FIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLS 82 (202)
Q Consensus 5 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 82 (202)
.+..+|..+ ...+|+.|++.+ +....+|.++..+++|+.++....... +++ ++.+++|+.|++.+|. ....+|
T Consensus 600 ~l~~lP~~f-~~~~L~~L~L~~-s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~--~L~~lp 674 (1153)
T PLN03210 600 PLRCMPSNF-RPENLVKLQMQG-SKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCS--SLVELP 674 (1153)
T ss_pred CCCCCCCcC-CccCCcEEECcC-ccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCC--Cccccc
Confidence 344555544 345566666665 344445555555555555553332211 334 5555556666665554 445555
Q ss_pred HHhccCCCccEEEeecCcchhh---------c----hhcc--c-ccccCCCCccEEEeeCCCCCCCCCcc----------
Q 037964 83 KSLCELRCLDSLKLVNESNMLG---------I----LQID--I-AEYQFPQSLTHLSLTNTKLKDDPMPT---------- 136 (202)
Q Consensus 83 ~~l~~l~~L~~L~l~~~~~~~~---------~----~~~~--~-~~~~~l~~L~~L~l~~~~~~~~~~~~---------- 136 (202)
.+++++++|+.|+++++..... + ++|. + .+...+.+|+.|++.++.+...+...
T Consensus 675 ~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l 754 (1153)
T PLN03210 675 SSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELIL 754 (1153)
T ss_pred hhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccc
Confidence 5555555555555554211000 0 0110 0 01111345555666555544332110
Q ss_pred -------------------ccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEee
Q 037964 137 -------------------LEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLII 197 (202)
Q Consensus 137 -------------------l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i 197 (202)
....++|+.|++++|....+ +|...+.+++|+.|++++|..++.+|... .+++|++|++
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~-lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~L 832 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-LPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDL 832 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCCccc-cChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEEC
Confidence 00123555555554433222 24445567777777777776666665443 4677777777
Q ss_pred ecCC
Q 037964 198 NPCA 201 (202)
Q Consensus 198 ~~c~ 201 (202)
++|.
T Consensus 833 s~c~ 836 (1153)
T PLN03210 833 SGCS 836 (1153)
T ss_pred CCCC
Confidence 7764
No 4
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.48 E-value=3.9e-16 Score=128.50 Aligned_cols=159 Identities=19% Similarity=0.225 Sum_probs=92.3
Q ss_pred CCCccccccHH-HhccccccEEEeCceeeccccccccccCCCcceeccccc------------------------Cch--
Q 037964 2 PLSFIDHTPED-IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHL------------------------SSC-- 54 (202)
Q Consensus 2 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~------------------------~~~-- 54 (202)
+.|+|..||.. +.+++.|-.||+++ |....+|..+..+.+|++|++.++ ...
T Consensus 134 S~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~ 212 (1255)
T KOG0444|consen 134 SYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLD 212 (1255)
T ss_pred ccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhh
Confidence 45667777754 56677777777777 666666665555555555543222 111
Q ss_pred --hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc-----ccccCCCCccEEEeeCC
Q 037964 55 --TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI-----AEYQFPQSLTHLSLTNT 127 (202)
Q Consensus 55 --~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~~~l~~L~~L~l~~~ 127 (202)
|.. +..|.+|+.++++.|. .-.+|+.+.++++|++|+++++ .+ ..+. -.+|++|+++.|
T Consensus 213 N~Pts-ld~l~NL~dvDlS~N~---Lp~vPecly~l~~LrrLNLS~N---------~iteL~~~~~~-W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 213 NIPTS-LDDLHNLRDVDLSENN---LPIVPECLYKLRNLRRLNLSGN---------KITELNMTEGE-WENLETLNLSRN 278 (1255)
T ss_pred cCCCc-hhhhhhhhhccccccC---CCcchHHHhhhhhhheeccCcC---------ceeeeeccHHH-Hhhhhhhccccc
Confidence 444 5556666666666663 5567777777777777777652 11 1222 346666666666
Q ss_pred CCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccc
Q 037964 128 KLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSM 176 (202)
Q Consensus 128 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 176 (202)
++... |.++.++++|+.|++..|...-+++|...+.+..|+.+..++|
T Consensus 279 QLt~L-P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 279 QLTVL-PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred hhccc-hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc
Confidence 66654 3566666666666666666555555554444444444444433
No 5
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.42 E-value=8e-13 Score=119.98 Aligned_cols=82 Identities=17% Similarity=0.198 Sum_probs=53.3
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEE
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHL 195 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 195 (202)
+++|+.|++++|......+. ..++|+.|++++|.+. .+|...+.+++|+.|++.+|..+..++.....++.|+.+
T Consensus 824 L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~--~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L 898 (1153)
T PLN03210 824 LESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIE--EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETV 898 (1153)
T ss_pred ccccCEEECCCCCccccccc---cccccCEeECCCCCCc--cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCee
Confidence 44555555555432221111 1245666666655543 234455678899999999988888888777788889999
Q ss_pred eeecCCC
Q 037964 196 IINPCAS 202 (202)
Q Consensus 196 ~i~~c~~ 202 (202)
++.+|++
T Consensus 899 ~l~~C~~ 905 (1153)
T PLN03210 899 DFSDCGA 905 (1153)
T ss_pred ecCCCcc
Confidence 9988863
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.40 E-value=1.1e-15 Score=119.87 Aligned_cols=180 Identities=18% Similarity=0.127 Sum_probs=90.1
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
.+++.++|.+++.+..|++|+.++ +....+|++++.+..+..++..+.... |.+ +..+.+|..+++.+|. ..+
T Consensus 100 ~n~ls~lp~~i~s~~~l~~l~~s~-n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~-~~~~~~l~~l~~~~n~---l~~ 174 (565)
T KOG0472|consen 100 HNKLSELPEQIGSLISLVKLDCSS-NELKELPDSIGRLLDLEDLDATNNQISSLPED-MVNLSKLSKLDLEGNK---LKA 174 (565)
T ss_pred cchHhhccHHHhhhhhhhhhhccc-cceeecCchHHHHhhhhhhhccccccccCchH-HHHHHHHHHhhccccc---hhh
Confidence 455666666666666666666666 555556666666666666654444433 444 6666666666666663 444
Q ss_pred HHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceE
Q 037964 81 LSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKL 158 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 158 (202)
+|.....|+.|+++|...+. -+.+ .++. +.+|..|++..|++...| +|+++..|+.+++..|.+.- +
T Consensus 175 l~~~~i~m~~L~~ld~~~N~------L~tlP~~lg~-l~~L~~LyL~~Nki~~lP--ef~gcs~L~Elh~g~N~i~~--l 243 (565)
T KOG0472|consen 175 LPENHIAMKRLKHLDCNSNL------LETLPPELGG-LESLELLYLRRNKIRFLP--EFPGCSLLKELHVGENQIEM--L 243 (565)
T ss_pred CCHHHHHHHHHHhcccchhh------hhcCChhhcc-hhhhHHHHhhhcccccCC--CCCccHHHHHHHhcccHHHh--h
Confidence 44444446666666654321 0111 2334 455555555555555432 44455555555544333211 1
Q ss_pred E-EcCCCCCcccEEEeccccCccceeeCCCccccccEEeeec
Q 037964 159 A-CCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINP 199 (202)
Q Consensus 159 ~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 199 (202)
+ .....++++..|++++|. ++++|.+...+.+|++|++++
T Consensus 244 pae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSN 284 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSN 284 (565)
T ss_pred HHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccC
Confidence 1 112234444444444444 444444444344444444443
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.40 E-value=5.9e-14 Score=114.78 Aligned_cols=192 Identities=17% Similarity=0.156 Sum_probs=95.8
Q ss_pred CCccccccH-HHhccccccEEEeCceeecccccc-ccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 3 LSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGK-YCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 3 ~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
-|.|++||. ++-.-.++++|++++ |....+.. .+.++.+|.+|++.++... |.-+|+++++|+.|++..|+ ..
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~-N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~--ir 234 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLAS-NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR--IR 234 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeecc-ccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc--ee
Confidence 345555553 233445566666666 43333332 2555555666555454444 32227777777777777775 22
Q ss_pred HHHHHHhccCCCccEEEeecCc------chhh----c-----hhccc------ccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 79 SVLSKSLCELRCLDSLKLVNES------NMLG----I-----LQIDI------AEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~------~~~~----~-----~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
..-.-.|..+++|+.|.+.+++ +.+- + -.+++ |+-. ++.|+.|++++|.+....++..
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfg-Lt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFG-LTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccc-cchhhhhccchhhhheeecchh
Confidence 2223445555555555554421 1100 0 01111 4555 5666666666666665555555
Q ss_pred cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceee-CCCccccccEEeeecC
Q 037964 138 EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTM-GTKATWKLEHLIINPC 200 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c 200 (202)
..+++|+.|+++.|.+..-+ +.....+..|+.|.+++|. +..+.- ....+.+|++|++++.
T Consensus 314 sftqkL~~LdLs~N~i~~l~-~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N 375 (873)
T KOG4194|consen 314 SFTQKLKELDLSSNRITRLD-EGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSN 375 (873)
T ss_pred hhcccceeEeccccccccCC-hhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCC
Confidence 56666666666655554321 1222335556666666665 433211 1123556666666553
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.39 E-value=1.5e-13 Score=112.40 Aligned_cols=142 Identities=19% Similarity=0.185 Sum_probs=73.3
Q ss_pred CCccccccH-HHhccccccEEEeCceeecccccc-ccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCch
Q 037964 3 LSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGK-YCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 3 ~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
.|.|.++.+ ++..++.||.||++. |....+|. .+..=.++++|++..+++. ... |..+.+|-.|.++.|+ .
T Consensus 134 ~N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~-F~~lnsL~tlkLsrNr--i 209 (873)
T KOG4194|consen 134 HNLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASNRITTLETGH-FDSLNSLLTLKLSRNR--I 209 (873)
T ss_pred ccccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeecccccccccccc-ccccchheeeecccCc--c
Confidence 344555432 355566666666666 44333333 2444456666654444433 333 6667777777777776 4
Q ss_pred HHHHHHHhccCCCccEEEeecCc-chhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc
Q 037964 78 QSVLSKSLCELRCLDSLKLVNES-NMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
...-+.+|.++++|+.|++.++. ...++ - .+.. +++|+.|.+..|++.+..-..|-.+.++++|++.+|..
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~irive~---l-tFqg-L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l 281 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIRIVEG---L-TFQG-LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL 281 (873)
T ss_pred cccCHHHhhhcchhhhhhccccceeeehh---h-hhcC-chhhhhhhhhhcCcccccCcceeeecccceeecccchh
Confidence 44444577779999999887631 00000 0 2333 44444444444444443333333444444444444443
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=5.7e-15 Score=103.81 Aligned_cols=161 Identities=19% Similarity=0.261 Sum_probs=124.1
Q ss_pred HhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCC
Q 037964 13 IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRC 90 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~ 90 (202)
+.++++++.|.++. |.....|..|..+.+|+.|+..+.... |.+ ++.+++||.|+++-|+ ...+|..|+.++.
T Consensus 29 Lf~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnr---l~~lprgfgs~p~ 103 (264)
T KOG0617|consen 29 LFNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNR---LNILPRGFGSFPA 103 (264)
T ss_pred ccchhhhhhhhccc-CceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhh---hhcCccccCCCch
Confidence 66788999999999 777777778999999999987777655 888 9999999999999884 7889999999999
Q ss_pred ccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcc
Q 037964 91 LDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCL 168 (202)
Q Consensus 91 L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 168 (202)
|+.||+.+++-. ...+ .+-. ++.|+.|+++.|.+.-.| ..++++.+|+.|.+.+|.... +|...+.+..|
T Consensus 104 levldltynnl~----e~~lpgnff~-m~tlralyl~dndfe~lp-~dvg~lt~lqil~lrdndll~--lpkeig~lt~l 175 (264)
T KOG0617|consen 104 LEVLDLTYNNLN----ENSLPGNFFY-MTTLRALYLGDNDFEILP-PDVGKLTNLQILSLRDNDLLS--LPKEIGDLTRL 175 (264)
T ss_pred hhhhhccccccc----cccCCcchhH-HHHHHHHHhcCCCcccCC-hhhhhhcceeEEeeccCchhh--CcHHHHHHHHH
Confidence 999999874210 0011 1222 577888899888887664 566888999999998777632 35556778889
Q ss_pred cEEEeccccCccceeeCCC
Q 037964 169 KFLHLKSMLWLDEWTMGTK 187 (202)
Q Consensus 169 ~~L~l~~~~~l~~~~~~~~ 187 (202)
++|++.++. +.-+|.+.+
T Consensus 176 relhiqgnr-l~vlppel~ 193 (264)
T KOG0617|consen 176 RELHIQGNR-LTVLPPELA 193 (264)
T ss_pred HHHhcccce-eeecChhhh
Confidence 999998887 666665543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.34 E-value=7e-14 Score=115.48 Aligned_cols=184 Identities=20% Similarity=0.186 Sum_probs=134.7
Q ss_pred ccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHH
Q 037964 7 DHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKS 84 (202)
Q Consensus 7 ~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 84 (202)
+.||.++.+|..|..||++. |...+.|.++....++-.|++.++.+. |..++-+++.|-.|++++|+ .+.+|..
T Consensus 93 sGiP~diF~l~dLt~lDLSh-NqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~Nr---Le~LPPQ 168 (1255)
T KOG0444|consen 93 SGIPTDIFRLKDLTILDLSH-NQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNR---LEMLPPQ 168 (1255)
T ss_pred CCCCchhcccccceeeecch-hhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccch---hhhcCHH
Confidence 34899999999999999999 888889988988888888886666654 66667889999999999995 8889999
Q ss_pred hccCCCccEEEeecCcc-hhh---c----------hhccc--------ccccCCCCccEEEeeCCCCCCCCCccccCCCC
Q 037964 85 LCELRCLDSLKLVNESN-MLG---I----------LQIDI--------AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPH 142 (202)
Q Consensus 85 l~~l~~L~~L~l~~~~~-~~~---~----------~~~~~--------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 142 (202)
+.++..|+.|++++++- .+. + +++.- .+.. +.+|..++++.|++... |+++-++++
T Consensus 169 ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~-l~NL~dvDlS~N~Lp~v-Pecly~l~~ 246 (1255)
T KOG0444|consen 169 IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD-LHNLRDVDLSENNLPIV-PECLYKLRN 246 (1255)
T ss_pred HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhh-hhhhhhccccccCCCcc-hHHHhhhhh
Confidence 99999999999988541 111 0 22211 3445 66777777777777765 467777777
Q ss_pred cceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeec
Q 037964 143 LLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINP 199 (202)
Q Consensus 143 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 199 (202)
|+.|++++|.+.. +....+...+|++|++++|+ +..+|.-...++.|++|...+
T Consensus 247 LrrLNLS~N~ite--L~~~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~ 300 (1255)
T KOG0444|consen 247 LRRLNLSGNKITE--LNMTEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANN 300 (1255)
T ss_pred hheeccCcCceee--eeccHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhcc
Confidence 8888887776643 33444556777888888777 666665556667776665544
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.32 E-value=7e-15 Score=115.31 Aligned_cols=182 Identities=16% Similarity=0.128 Sum_probs=106.5
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+.+.+.++|++++++..|..++..+ |....+|.+++.+.++..+........ +++ .-+|+.|++++...| ..+
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N---~L~ 196 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSN---LLE 196 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchh---hhh
Confidence 4577888899999999999999888 777777877887777777764333322 444 334888888888888 688
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceE
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKL 158 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 158 (202)
.+|..++.+.+|+.|++..+.-. .+ .+.. +..|.+++++.|.++-.+.+...+++++..|++.+|.... .
T Consensus 197 tlP~~lg~l~~L~~LyL~~Nki~------~lPef~g-cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke--~ 267 (565)
T KOG0472|consen 197 TLPPELGGLESLELLYLRRNKIR------FLPEFPG-CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE--V 267 (565)
T ss_pred cCChhhcchhhhHHHHhhhcccc------cCCCCCc-cHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc--C
Confidence 88888888888888888753200 00 2333 4444444444444444433333344444444444444321 1
Q ss_pred EEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeec
Q 037964 159 ACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINP 199 (202)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 199 (202)
|....-+++|++|++++|. +..+|.+.|.+ .|+.|-+.+
T Consensus 268 Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leG 306 (565)
T KOG0472|consen 268 PDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEG 306 (565)
T ss_pred chHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcC
Confidence 1112224444444444444 44444444444 444444433
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=2.1e-13 Score=106.82 Aligned_cols=192 Identities=19% Similarity=0.226 Sum_probs=123.2
Q ss_pred CCccccccH-HHhccccccEEEeCceeeccccccccccCCCcceecccc-cCch--hHHHcCc-----------------
Q 037964 3 LSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALH-LSSC--TRDILGR----------------- 61 (202)
Q Consensus 3 ~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~-~~~~--~~~~l~~----------------- 61 (202)
.|.|+.||+ +|+.+++||.||++.|+....-|+.+.++.++.+|.... .++. +..+|+.
T Consensus 76 qN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Ci 155 (498)
T KOG4237|consen 76 QNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCI 155 (498)
T ss_pred cCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcch
Confidence 578999986 699999999999999666666677788888877776444 2222 4343444
Q ss_pred -------CCccceeeEEeecCchHHHHHH-HhccCCCccEEEeecCcchhh----c------------------------
Q 037964 62 -------LPNLQSLKIFEDLSHYQSVLSK-SLCELRCLDSLKLVNESNMLG----I------------------------ 105 (202)
Q Consensus 62 -------l~~L~~L~l~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~~~----~------------------------ 105 (202)
|++|+.|.+.+|. ...++. ++..+..++.+++..++..-+ |
T Consensus 156 r~~al~dL~~l~lLslyDn~---~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~ 232 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNK---IQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLY 232 (498)
T ss_pred hHHHHHHhhhcchhcccchh---hhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHH
Confidence 5555555555442 333333 444455555554443221110 0
Q ss_pred ----------------------hhcc--c-------ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccC
Q 037964 106 ----------------------LQID--I-------AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 106 ----------------------~~~~--~-------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
+.+. . .+.. +++|+.+++++|+++.....+|.++.+++.|++..|.+.
T Consensus 233 ~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~-L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~ 311 (498)
T KOG4237|consen 233 YKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK-LPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE 311 (498)
T ss_pred HHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh-cccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH
Confidence 0000 0 3566 899999999999999988889999999999999988864
Q ss_pred CceEEEcCCCCCcccEEEeccccCccceeeCC-CccccccEEeeecC
Q 037964 155 RRKLACCSGGFPCLKFLHLKSMLWLDEWTMGT-KATWKLEHLIINPC 200 (202)
Q Consensus 155 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~i~~c 200 (202)
.-. .....++..|+.|++.+|+ ++.+.+.. ....+|.+|.+-..
T Consensus 312 ~v~-~~~f~~ls~L~tL~L~~N~-it~~~~~aF~~~~~l~~l~l~~N 356 (498)
T KOG4237|consen 312 FVS-SGMFQGLSGLKTLSLYDNQ-ITTVAPGAFQTLFSLSTLNLLSN 356 (498)
T ss_pred HHH-HHhhhccccceeeeecCCe-eEEEecccccccceeeeeehccC
Confidence 311 2244578899999999998 66543321 22345666665443
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.14 E-value=1.1e-11 Score=97.77 Aligned_cols=162 Identities=23% Similarity=0.157 Sum_probs=70.9
Q ss_pred cHHHhccccccEEEeCceeeccccccccccCCC---cceecccccCc--h----hHHHcCcC-CccceeeEEeecCc--h
Q 037964 10 PEDIWKMHKLRHLNFGYIKLHAHPGKYCSALEN---LNFISALHLSS--C----TRDILGRL-PNLQSLKIFEDLSH--Y 77 (202)
Q Consensus 10 p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~---L~~L~~~~~~~--~----~~~~l~~l-~~L~~L~l~~~~~~--~ 77 (202)
+..+..+++|++|++++|.+....+..+..+.+ |++|+...+.. . ...++..+ ++|+.|++++|... .
T Consensus 74 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 153 (319)
T cd00116 74 LQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGAS 153 (319)
T ss_pred HHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchH
Confidence 344455556666666553333333333333333 55555332211 1 11114444 55566666555411 1
Q ss_pred HHHHHHHhccCCCccEEEeecCcchhhchhc----cc--ccccCCCCccEEEeeCCCCCCCCC----ccccCCCCcceEE
Q 037964 78 QSVLSKSLCELRCLDSLKLVNESNMLGILQI----DI--AEYQFPQSLTHLSLTNTKLKDDPM----PTLEKLPHLLVLK 147 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~----~~--~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~ 147 (202)
...++..+..+++|+.|+++++. +.+ .+ .+.. .++|+.|++++|.+..... ..+..+++|++|+
T Consensus 154 ~~~~~~~~~~~~~L~~L~l~~n~-----l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ 227 (319)
T cd00116 154 CEALAKALRANRDLKELNLANNG-----IGDAGIRALAEGLKA-NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLN 227 (319)
T ss_pred HHHHHHHHHhCCCcCEEECcCCC-----CchHHHHHHHHHHHh-CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEe
Confidence 12344444555556655555421 010 00 1223 3466666666665543321 1233455666666
Q ss_pred eccCccCCceEEEcCC----CCCcccEEEecccc
Q 037964 148 LKQNSFSRRKLACCSG----GFPCLKFLHLKSML 177 (202)
Q Consensus 148 l~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~ 177 (202)
+++|.+.+..+..... ..+.|+.|++.+|.
T Consensus 228 ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 228 LGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred cCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 6655544311110000 23566666666654
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.08 E-value=7.6e-12 Score=107.01 Aligned_cols=84 Identities=26% Similarity=0.259 Sum_probs=56.7
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCc---------------------eEEEcCCCCCcccEEEec
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRR---------------------KLACCSGGFPCLKFLHLK 174 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---------------------~~~~~~~~~~~L~~L~l~ 174 (202)
..+|+.|++++|.+...+...+.+++.|+.|++++|....- .+| ....++.|+.++++
T Consensus 382 ~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS 460 (1081)
T KOG0618|consen 382 FKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLS 460 (1081)
T ss_pred ccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecc
Confidence 66777777777777766666667777777777776665320 001 22347889999999
Q ss_pred cccCccceeeCCCcc-ccccEEeeecCC
Q 037964 175 SMLWLDEWTMGTKAT-WKLEHLIINPCA 201 (202)
Q Consensus 175 ~~~~l~~~~~~~~~~-~~L~~L~i~~c~ 201 (202)
.|. ++.+......- |.|++|++++.+
T Consensus 461 ~N~-L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 461 CNN-LSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred cch-hhhhhhhhhCCCcccceeeccCCc
Confidence 887 77665443323 789999998875
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.07 E-value=1.3e-12 Score=92.03 Aligned_cols=142 Identities=18% Similarity=0.194 Sum_probs=89.9
Q ss_pred CCCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
++.++++-+|+.+..+.+|+.|++.+ |....+|..+..+++|+.|+..-.+-. |+. ||.+|.|..|++++|. -..
T Consensus 40 LSHNKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnvgmnrl~~lprg-fgs~p~levldltynn-l~e 116 (264)
T KOG0617|consen 40 LSHNKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGMNRLNILPRG-FGSFPALEVLDLTYNN-LNE 116 (264)
T ss_pred cccCceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheecchhhhhcCccc-cCCCchhhhhhccccc-ccc
Confidence 35677888888888888888888888 777888888888888877763222222 667 8888888888888765 112
Q ss_pred HHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc
Q 037964 79 SVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
..+|.-|..+..|+-|++..++ --.+ .++. +.+|+-|.+..|.+-.. +..++.+..|+.|++++|..
T Consensus 117 ~~lpgnff~m~tlralyl~dnd------fe~lp~dvg~-lt~lqil~lrdndll~l-pkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 117 NSLPGNFFYMTTLRALYLGDND------FEILPPDVGK-LTNLQILSLRDNDLLSL-PKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred ccCCcchhHHHHHHHHHhcCCC------cccCChhhhh-hcceeEEeeccCchhhC-cHHHHHHHHHHHHhccccee
Confidence 3345445455555555554321 0000 3455 66666666666665554 35566666666666665554
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.06 E-value=4.6e-11 Score=94.13 Aligned_cols=185 Identities=19% Similarity=0.137 Sum_probs=92.1
Q ss_pred ccHHHhccccccEEEeCceeec------cccccccccCCCcceecccccCch---hHHHcCcC---CccceeeEEeecCc
Q 037964 9 TPEDIWKMHKLRHLNFGYIKLH------AHPGKYCSALENLNFISALHLSSC---TRDILGRL---PNLQSLKIFEDLSH 76 (202)
Q Consensus 9 lp~~~~~l~~L~~L~l~~~~~~------~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l---~~L~~L~l~~~~~~ 76 (202)
++..+...+++++++++++... ..++..+..+++|+.|+....... +.. +..+ ++|++|+++++...
T Consensus 43 i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV-LESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred HHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH-HHHHhccCcccEEEeeCCccc
Confidence 4444555566666666662222 112233444556666654333211 222 3333 33666666666411
Q ss_pred --hHHHHHHHhccC-CCccEEEeecCcchhhchhc----cc--ccccCCCCccEEEeeCCCCCCCCCc----cccCCCCc
Q 037964 77 --YQSVLSKSLCEL-RCLDSLKLVNESNMLGILQI----DI--AEYQFPQSLTHLSLTNTKLKDDPMP----TLEKLPHL 143 (202)
Q Consensus 77 --~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~----~~--~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L 143 (202)
....+...+..+ ++|+.|+++++. +++ .+ .+.. +++|+.|++++|.+.+.... .+...++|
T Consensus 122 ~~~~~~l~~~l~~~~~~L~~L~L~~n~-----l~~~~~~~~~~~~~~-~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L 195 (319)
T cd00116 122 DRGLRLLAKGLKDLPPALEKLVLGRNR-----LEGASCEALAKALRA-NRDLKELNLANNGIGDAGIRALAEGLKANCNL 195 (319)
T ss_pred hHHHHHHHHHHHhCCCCceEEEcCCCc-----CCchHHHHHHHHHHh-CCCcCEEECcCCCCchHHHHHHHHHHHhCCCC
Confidence 112333455555 666666666532 010 01 2334 56777777777776643322 23345677
Q ss_pred ceEEeccCccCCceE---EEcCCCCCcccEEEeccccCccceeeC--CC----ccccccEEeeecCC
Q 037964 144 LVLKLKQNSFSRRKL---ACCSGGFPCLKFLHLKSMLWLDEWTMG--TK----ATWKLEHLIINPCA 201 (202)
Q Consensus 144 ~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~l~~~~~~--~~----~~~~L~~L~i~~c~ 201 (202)
++|++++|.+.+... ......+++|+.|++++|. +...... .. ..+.|++|++.+|.
T Consensus 196 ~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred CEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 777777666543221 1123346778888888776 4321100 01 12567777777663
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.96 E-value=8.3e-10 Score=95.74 Aligned_cols=39 Identities=10% Similarity=-0.002 Sum_probs=16.7
Q ss_pred CccccccHHHhccccccEEEeCceeeccccccccccCCCcceec
Q 037964 4 SFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFIS 47 (202)
Q Consensus 4 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~ 47 (202)
.+++.+|..+. ++|+.|++++ |....+|..+. .+|++|+
T Consensus 188 ~~LtsLP~~Ip--~~L~~L~Ls~-N~LtsLP~~l~--~nL~~L~ 226 (754)
T PRK15370 188 LGLTTIPACIP--EQITTLILDN-NELKSLPENLQ--GNIKTLY 226 (754)
T ss_pred CCcCcCCcccc--cCCcEEEecC-CCCCcCChhhc--cCCCEEE
Confidence 34445554332 3455555555 33334443332 3444444
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.95 E-value=1.6e-09 Score=93.86 Aligned_cols=35 Identities=9% Similarity=-0.122 Sum_probs=23.2
Q ss_pred CcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 166 PCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 166 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
.+|+.|++++|. ++.+|...+.+++|+.|++++++
T Consensus 422 ~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 422 SGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 345566666665 55555555667888888888765
No 19
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=3.3e-11 Score=91.68 Aligned_cols=181 Identities=20% Similarity=0.183 Sum_probs=110.1
Q ss_pred ccccEEEeCceeecc-ccccccccCCCcceecccccC--ch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCcc
Q 037964 17 HKLRHLNFGYIKLHA-HPGKYCSALENLNFISALHLS--SC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLD 92 (202)
Q Consensus 17 ~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~~~~~~--~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 92 (202)
++|++||+++.+... .+-.-+.++.+|+.|....+. +. ..+ +++-.+|+.++++.+++...-.+.-.+..++.|+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~-iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNT-IAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHH-HhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 357788888733322 122224666777776644332 33 555 7777888888888877555555556677778888
Q ss_pred EEEeecCcchhhchhcccccccCCCCccEEEeeCC--CCCCCCCcccc-CCCCcceEEeccCccCCceEEEcCCCCCccc
Q 037964 93 SLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNT--KLKDDPMPTLE-KLPHLLVLKLKQNSFSRRKLACCSGGFPCLK 169 (202)
Q Consensus 93 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 169 (202)
.|+++.+...-+ .-++.+.+.-++++.|+++++ .+.......+. ++|+|.+|+++++.....+.......|+.|+
T Consensus 264 ~LNlsWc~l~~~--~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~ 341 (419)
T KOG2120|consen 264 ELNLSWCFLFTE--KVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ 341 (419)
T ss_pred hcCchHhhccch--hhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence 888876321100 000022331346777777776 22222344554 7888888998866543323333344688899
Q ss_pred EEEeccccCcc-ceeeCCCccccccEEeeecC
Q 037964 170 FLHLKSMLWLD-EWTMGTKATWKLEHLIINPC 200 (202)
Q Consensus 170 ~L~l~~~~~l~-~~~~~~~~~~~L~~L~i~~c 200 (202)
+|.++.|+.+. +........|+|.+|++.+|
T Consensus 342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 99999888653 33445567888999988877
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.87 E-value=3.4e-09 Score=91.96 Aligned_cols=171 Identities=19% Similarity=0.226 Sum_probs=115.6
Q ss_pred CCCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
+.+|+++.+|..+. .+|++|++++ |....+|..+. .+|+.|+...+... |.. +. ++|+.|++++|. .
T Consensus 206 Ls~N~LtsLP~~l~--~nL~~L~Ls~-N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~-l~--s~L~~L~Ls~N~---L 274 (754)
T PRK15370 206 LDNNELKSLPENLQ--GNIKTLYANS-NQLTSIPATLP--DTIQEMELSINRITELPER-LP--SALQSLDLFHNK---I 274 (754)
T ss_pred ecCCCCCcCChhhc--cCCCEEECCC-CccccCChhhh--ccccEEECcCCccCcCChh-Hh--CCCCEEECcCCc---c
Confidence 35788889998765 5899999999 55556776553 46777765444333 544 43 579999999886 3
Q ss_pred HHHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceE
Q 037964 79 SVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKL 158 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 158 (202)
..+|..+. ++|+.|+++++. +.+ + ...++++|+.|++++|++...+. .+ .++|+.|++++|.+.. +
T Consensus 275 ~~LP~~l~--~sL~~L~Ls~N~-----Lt~-L-P~~lp~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~Lt~--L 340 (754)
T PRK15370 275 SCLPENLP--EELRYLSVYDNS-----IRT-L-PAHLPSGITHLNVQSNSLTALPE-TL--PPGLKTLEAGENALTS--L 340 (754)
T ss_pred CccccccC--CCCcEEECCCCc-----ccc-C-cccchhhHHHHHhcCCccccCCc-cc--cccceeccccCCcccc--C
Confidence 35676554 489999997532 010 0 11114578899999998886542 22 2689999999887653 2
Q ss_pred EEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 159 ACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
+. .-.++|+.|++++|. +..++.. ..+.|++|++++|.
T Consensus 341 P~--~l~~sL~~L~Ls~N~-L~~LP~~--lp~~L~~LdLs~N~ 378 (754)
T PRK15370 341 PA--SLPPELQVLDVSKNQ-ITVLPET--LPPTITTLDVSRNA 378 (754)
T ss_pred Ch--hhcCcccEEECCCCC-CCcCChh--hcCCcCEEECCCCc
Confidence 22 224799999999997 6655433 24689999999874
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=5e-10 Score=80.50 Aligned_cols=89 Identities=24% Similarity=0.260 Sum_probs=20.4
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccc-cCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCS-ALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~-~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
...|.++|. +.+..+++.|++.+ +....+. .++ .+.+|+.|+..++... .+. +..+++|+.|++++|+ ...
T Consensus 6 ~~~i~~~~~-~~n~~~~~~L~L~~-n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~---I~~ 78 (175)
T PF14580_consen 6 ANMIEQIAQ-YNNPVKLRELNLRG-NQISTIE-NLGATLDKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNR---ISS 78 (175)
T ss_dssp ---------------------------------S--TT-TT--EEE-TTS--S--TT-----TT--EEE--SS------S
T ss_pred ccccccccc-cccccccccccccc-ccccccc-chhhhhcCCCEEECCCCCCccccC-ccChhhhhhcccCCCC---CCc
Confidence 344555555 55666789999999 5544443 355 4677888776555555 656 7778888888888886 323
Q ss_pred HHHHh-ccCCCccEEEeec
Q 037964 81 LSKSL-CELRCLDSLKLVN 98 (202)
Q Consensus 81 ~~~~l-~~l~~L~~L~l~~ 98 (202)
+.+.+ ..+++|+.|++++
T Consensus 79 i~~~l~~~lp~L~~L~L~~ 97 (175)
T PF14580_consen 79 ISEGLDKNLPNLQELYLSN 97 (175)
T ss_dssp -CHHHHHH-TT--EEE-TT
T ss_pred cccchHHhCCcCCEEECcC
Confidence 32222 2455666666643
No 22
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.81 E-value=1.1e-08 Score=90.22 Aligned_cols=60 Identities=17% Similarity=0.150 Sum_probs=27.6
Q ss_pred HhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEee
Q 037964 13 IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFED 73 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~ 73 (202)
|..++.|++||+++|.....+|..|+++-+|+.|+....... |.. ++++.+|++|++..+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~-l~~Lk~L~~Lnl~~~ 628 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSG-LGNLKKLIYLNLEVT 628 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchH-HHHHHhhheeccccc
Confidence 334555555555542224455555555555554443333322 434 444444444444444
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.81 E-value=4.9e-10 Score=88.22 Aligned_cols=87 Identities=25% Similarity=0.182 Sum_probs=61.4
Q ss_pred HhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEE
Q 037964 84 SLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLAC 160 (202)
Q Consensus 84 ~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 160 (202)
.|+++++|+.|+++++. -..| |+.. ...++.|+|..|++....-..|.++..|+.|++++|.+..-- +.
T Consensus 269 cf~~L~~L~~lnlsnN~------i~~i~~~aFe~-~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~-~~ 340 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNK------ITRIEDGAFEG-AAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA-PG 340 (498)
T ss_pred HHhhcccceEeccCCCc------cchhhhhhhcc-hhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe-cc
Confidence 46778999999998642 1112 7777 888889999888887766667778888888999888875321 22
Q ss_pred cCCCCCcccEEEeccccC
Q 037964 161 CSGGFPCLKFLHLKSMLW 178 (202)
Q Consensus 161 ~~~~~~~L~~L~l~~~~~ 178 (202)
......+|.+|.+-.|+.
T Consensus 341 aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 341 AFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cccccceeeeeehccCcc
Confidence 334456677777777663
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.81 E-value=2.1e-10 Score=98.46 Aligned_cols=171 Identities=22% Similarity=0.223 Sum_probs=108.8
Q ss_pred ccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEE
Q 037964 17 HKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSL 94 (202)
Q Consensus 17 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 94 (202)
.+|.+++++. +....+|.+++.+.+|+.+...++.-. +.+ +..+++|++|.+..|. .+.+|....+.+.|++|
T Consensus 241 ~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~r-i~~~~~L~~l~~~~ne---l~yip~~le~~~sL~tL 315 (1081)
T KOG0618|consen 241 LNLQYLDISH-NNLSNLPEWIGACANLEALNANHNRLVALPLR-ISRITSLVSLSAAYNE---LEYIPPFLEGLKSLRTL 315 (1081)
T ss_pred ccceeeecch-hhhhcchHHHHhcccceEecccchhHHhhHHH-HhhhhhHHHHHhhhhh---hhhCCCcccccceeeee
Confidence 4666677776 555566666777777777765544434 555 6677777777777773 66667777777777777
Q ss_pred EeecCc--chhh-c-------------hhccc------ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCc
Q 037964 95 KLVNES--NMLG-I-------------LQIDI------AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNS 152 (202)
Q Consensus 95 ~l~~~~--~~~~-~-------------~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 152 (202)
++..+. ...+ + .+..+ .-.. .+.|+.|++.+|.+.+...+.+.++.+|+.|++++|.
T Consensus 316 dL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~-~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 316 DLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENN-HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eehhccccccchHHHhhhhHHHHHHhhhhccccccccccchh-hHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 776521 0001 0 01111 1122 5679999999999999999999999999999999886
Q ss_pred cCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEE
Q 037964 153 FSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHL 195 (202)
Q Consensus 153 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 195 (202)
...-. ......++.|+.|++++|. ++.++-....+++|+.|
T Consensus 395 L~~fp-as~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 395 LNSFP-ASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTL 435 (1081)
T ss_pred cccCC-HHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHH
Confidence 64210 1234457777888888876 65554433333334333
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.77 E-value=3.5e-08 Score=85.74 Aligned_cols=41 Identities=10% Similarity=-0.042 Sum_probs=23.2
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecc
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISA 48 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~ 48 (202)
+++.++.+|..+. .+|+.|++.+ |....+|.. +++|+.|+.
T Consensus 209 s~~~LtsLP~~l~--~~L~~L~L~~-N~Lt~LP~l---p~~Lk~LdL 249 (788)
T PRK15387 209 GESGLTTLPDCLP--AHITTLVIPD-NNLTSLPAL---PPELRTLEV 249 (788)
T ss_pred CCCCCCcCCcchh--cCCCEEEccC-CcCCCCCCC---CCCCcEEEe
Confidence 4556677777654 3566666666 444445532 345555553
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.77 E-value=4.1e-09 Score=92.86 Aligned_cols=177 Identities=21% Similarity=0.170 Sum_probs=113.1
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
+..++++|++++.+.+||+|++++ +....+|.+++++.+|.+|+......- ++.+...|++||+|.+..........
T Consensus 581 ~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~ 659 (889)
T KOG4658|consen 581 NSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKL 659 (889)
T ss_pred CCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchh
Confidence 346788999999999999999999 777799999999999999985555432 43426679999999998764335566
Q ss_pred HHHHhccCCCccEEEeecCcc-hh-hc------------hh--ccc------ccccCCCCccEEEeeCCCCCCCCCcccc
Q 037964 81 LSKSLCELRCLDSLKLVNESN-ML-GI------------LQ--IDI------AEYQFPQSLTHLSLTNTKLKDDPMPTLE 138 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~-~~-~~------------~~--~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 138 (202)
....+.++.+|+.++...... .+ ++ +. +.. .... +.+|+.|.+.++.+.........
T Consensus 660 ~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~-l~~L~~L~i~~~~~~e~~~~~~~ 738 (889)
T KOG4658|consen 660 LLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGS-LGNLEELSILDCGISEIVIEWEE 738 (889)
T ss_pred hHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeeccccc-ccCcceEEEEcCCCchhhccccc
Confidence 677778888888888866332 11 10 11 100 3444 67777777777776543332211
Q ss_pred C------CCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCcccee
Q 037964 139 K------LPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWT 183 (202)
Q Consensus 139 ~------l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 183 (202)
. ++++..+... ++..... ..+....|+|+.|.+.+|...+++.
T Consensus 739 ~~~~~~~f~~l~~~~~~-~~~~~r~-l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 739 SLIVLLCFPNLSKVSIL-NCHMLRD-LTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred ccchhhhHHHHHHHHhh-ccccccc-cchhhccCcccEEEEecccccccCC
Confidence 1 2233333332 2211111 2334457788888888877665543
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3.2e-09 Score=84.53 Aligned_cols=128 Identities=22% Similarity=0.214 Sum_probs=71.6
Q ss_pred CccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCC-CccccCC
Q 037964 63 PNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDP-MPTLEKL 140 (202)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l 140 (202)
+.|+.|.++.|. ...+.+...+..+|+|+.|++..+... .... ...- ++.|+.|+|++|++...+ ....+.+
T Consensus 197 ~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~----~~~~~~~~i-~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 197 SHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEII----LIKATSTKI-LQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred hhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhccccc----ceecchhhh-hhHHhhccccCCcccccccccccccc
Confidence 444444444443 114444455555666666666543211 0000 2333 677888888888776544 3456678
Q ss_pred CCcceEEeccCccCCceEEE-----cCCCCCcccEEEeccccCccceeeC--CCccccccEEee
Q 037964 141 PHLLVLKLKQNSFSRRKLAC-----CSGGFPCLKFLHLKSMLWLDEWTMG--TKATWKLEHLII 197 (202)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~l~~~~~~--~~~~~~L~~L~i 197 (202)
|.|..|.++.++...-..+. ....|++|++|++..|+ ..+|+.- ....++|+.|.+
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~-I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN-IRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred cchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc-cccccccchhhccchhhhhhc
Confidence 88888888866653311111 12458888888888887 6556433 233455665554
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.8e-09 Score=85.90 Aligned_cols=84 Identities=24% Similarity=0.139 Sum_probs=45.8
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCC-------Cc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGT-------KA 188 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------~~ 188 (202)
+++++.|++..|..-........-+..|+.|++++|.+.........+.||.|+.|.++.+. ++.+.... ..
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHT 299 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcc
Confidence 55666666655531111112222344566666666665443323345567777777777776 44443221 35
Q ss_pred cccccEEeeecC
Q 037964 189 TWKLEHLIINPC 200 (202)
Q Consensus 189 ~~~L~~L~i~~c 200 (202)
||+|++|++...
T Consensus 300 f~kL~~L~i~~N 311 (505)
T KOG3207|consen 300 FPKLEYLNISEN 311 (505)
T ss_pred cccceeeecccC
Confidence 788888887654
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=3.2e-09 Score=76.34 Aligned_cols=61 Identities=26% Similarity=0.302 Sum_probs=19.8
Q ss_pred CCCccEEEeeCCCCCCCCCccc-cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTL-EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
+++|+.|++++|.++... +.+ ..+|+|+.|++++|.+..-.-......+|+|+.|++.+|+
T Consensus 63 L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 63 LPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp -TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred hhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc
Confidence 556666666666666542 222 2466666666665555331111223346666666666666
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.56 E-value=1.1e-07 Score=77.34 Aligned_cols=173 Identities=21% Similarity=0.235 Sum_probs=99.6
Q ss_pred cHHHhccccccEEEeCceeeccccccccccCC-CcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHHhc
Q 037964 10 PEDIWKMHKLRHLNFGYIKLHAHPGKYCSALE-NLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLC 86 (202)
Q Consensus 10 p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~-~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 86 (202)
+..+..++.++.|++.+ +....+|...+.+. +|+.|+....... +.. ++.+++|+.|++++|+ ...++...+
T Consensus 109 ~~~~~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~-~~~l~~L~~L~l~~N~---l~~l~~~~~ 183 (394)
T COG4886 109 ISELLELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDNKIESLPSP-LRNLPNLKNLDLSFND---LSDLPKLLS 183 (394)
T ss_pred chhhhcccceeEEecCC-cccccCccccccchhhcccccccccchhhhhhh-hhccccccccccCCch---hhhhhhhhh
Confidence 34455566777777777 66666666566553 7777764444433 345 7777777777777774 666666666
Q ss_pred cCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCC
Q 037964 87 ELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGG 164 (202)
Q Consensus 87 ~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 164 (202)
..+.|+.|+++++. -..+ .... +.+|+++.+.+|+.... +..+.++.++..+.+..|.... .+...+.
T Consensus 184 ~~~~L~~L~ls~N~------i~~l~~~~~~-~~~L~~l~~~~N~~~~~-~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~ 253 (394)
T COG4886 184 NLSNLNNLDLSGNK------ISDLPPEIEL-LSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLED--LPESIGN 253 (394)
T ss_pred hhhhhhheeccCCc------cccCchhhhh-hhhhhhhhhcCCcceec-chhhhhcccccccccCCceeee--ccchhcc
Confidence 77777777776521 0011 1123 45566777766643332 3455566666666655444322 1233445
Q ss_pred CCcccEEEeccccCccceeeCCCccccccEEeeec
Q 037964 165 FPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINP 199 (202)
Q Consensus 165 ~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 199 (202)
.++++.|++++|. +..++. .+....++.|++++
T Consensus 254 l~~l~~L~~s~n~-i~~i~~-~~~~~~l~~L~~s~ 286 (394)
T COG4886 254 LSNLETLDLSNNQ-ISSISS-LGSLTNLRELDLSG 286 (394)
T ss_pred ccccceecccccc-cccccc-ccccCccCEEeccC
Confidence 5667777776666 555544 44556666666654
No 31
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.51 E-value=1.2e-07 Score=56.30 Aligned_cols=60 Identities=28% Similarity=0.447 Sum_probs=44.9
Q ss_pred CCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 117 QSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
++|+.|++++|++...+...+.++++|++|++++|.+.. .-+....++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~-i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTS-IPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESE-EETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCc-cCHHHHcCCCCCCEEeCcCCc
Confidence 467888888888888877888888888888888777743 112234678888888888775
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.45 E-value=5.7e-08 Score=75.52 Aligned_cols=188 Identities=22% Similarity=0.235 Sum_probs=102.6
Q ss_pred HHHhccccccEEEeCceeeccc----cccccccCCCcceeccccc--Cc--h--------hHHHcCcCCccceeeEEeec
Q 037964 11 EDIWKMHKLRHLNFGYIKLHAH----PGKYCSALENLNFISALHL--SS--C--------TRDILGRLPNLQSLKIFEDL 74 (202)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~~~~~--~~--~--------~~~~l~~l~~L~~L~l~~~~ 74 (202)
+.+..+..++.+++++|++... +.+.+...++|+.-+..+. .. . ...|+...++|++++|++|.
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3455678899999999655433 2233455555555442221 11 1 33446677899999999987
Q ss_pred --CchHHHHHHHhccCCCccEEEeecCcchhh--------c------------------hhc--cc----------cccc
Q 037964 75 --SHYQSVLSKSLCELRCLDSLKLVNESNMLG--------I------------------LQI--DI----------AEYQ 114 (202)
Q Consensus 75 --~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--------~------------------~~~--~~----------~~~~ 114 (202)
......+-+.+.++..|++|.++++.-... + ..| +. .++.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 223455666777888999999987431110 0 000 00 2333
Q ss_pred CCCCccEEEeeCCCCCCCCC----ccccCCCCcceEEeccCccCCce---EEEcCCCCCcccEEEeccccCccc---e--
Q 037964 115 FPQSLTHLSLTNTKLKDDPM----PTLEKLPHLLVLKLKQNSFSRRK---LACCSGGFPCLKFLHLKSMLWLDE---W-- 182 (202)
Q Consensus 115 ~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~l~~---~-- 182 (202)
.+.|+.+.++.|.+..... ..+..+++|+.|++.+|.|.-+. +......+++|+.|++.+|- ++. +
T Consensus 184 -~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~ 261 (382)
T KOG1909|consen 184 -HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAF 261 (382)
T ss_pred -ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccc-cccccHHHH
Confidence 4566666666665544332 23446666666666666654322 11122345666666666665 321 1
Q ss_pred -eeCCCccccccEEeeecC
Q 037964 183 -TMGTKATWKLEHLIINPC 200 (202)
Q Consensus 183 -~~~~~~~~~L~~L~i~~c 200 (202)
..-....|.|+.+.+.+|
T Consensus 262 ~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGN 280 (382)
T ss_pred HHHHhccCCCCceeccCcc
Confidence 111133666666666554
No 33
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=2.2e-07 Score=79.86 Aligned_cols=107 Identities=21% Similarity=0.250 Sum_probs=74.0
Q ss_pred cceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCC
Q 037964 65 LQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPH 142 (202)
Q Consensus 65 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 142 (202)
++.|++.++. ..+.+|..++++++|+.|+++++. +.|.+ .+.. +++|+.|++++|++.+..+..++++++
T Consensus 420 v~~L~L~~n~--L~g~ip~~i~~L~~L~~L~Ls~N~-----l~g~iP~~~~~-l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQG--LRGFIPNDISKLRHLQSINLSGNS-----IRGNIPPSLGS-ITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEECCCCC--ccccCCHHHhCCCCCCEEECCCCc-----ccCcCChHHhC-CCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 5667777766 666777888888888888887643 23343 4566 788888888888888777778888888
Q ss_pred cceEEeccCccCCceEEEcCC-CCCcccEEEeccccCcc
Q 037964 143 LLVLKLKQNSFSRRKLACCSG-GFPCLKFLHLKSMLWLD 180 (202)
Q Consensus 143 L~~L~l~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~ 180 (202)
|+.|++++|.+.+.. |...+ .+.++..+.+.+|..+.
T Consensus 492 L~~L~Ls~N~l~g~i-P~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 492 LRILNLNGNSLSGRV-PAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCEEECcCCcccccC-ChHHhhccccCceEEecCCcccc
Confidence 888888877776643 32222 23455677777766443
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.39 E-value=1.2e-07 Score=73.74 Aligned_cols=186 Identities=15% Similarity=0.098 Sum_probs=122.3
Q ss_pred HHHhccccccEEEeCceeeccccccc----cccCCCcceecccccCch------h---------HHHcCcCCccceeeEE
Q 037964 11 EDIWKMHKLRHLNFGYIKLHAHPGKY----CSALENLNFISALHLSSC------T---------RDILGRLPNLQSLKIF 71 (202)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~~~~~~~~------~---------~~~l~~l~~L~~L~l~ 71 (202)
+++...++|++++||.|.+....+.. +.++..|++|++.++.-. . ....+.-++||.+...
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 34456679999999997665554443 566788999986665311 1 1113455889999999
Q ss_pred eecCc--hHHHHHHHhccCCCccEEEeecCcchhhchhcc-c---ccccCCCCccEEEeeCCCCCCCC----CccccCCC
Q 037964 72 EDLSH--YQSVLSKSLCELRCLDSLKLVNESNMLGILQID-I---AEYQFPQSLTHLSLTNTKLKDDP----MPTLEKLP 141 (202)
Q Consensus 72 ~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~---~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~ 141 (202)
.|+.. --..+...+...+.|+.+.++.+.-.. .|. . .+.. +++|+.|++..|-++... ...+..++
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~---eG~~al~eal~~-~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRP---EGVTALAEALEH-CPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccC---chhHHHHHHHHh-CCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 88722 233455677778899999887521000 011 1 4566 899999999999776544 33556788
Q ss_pred CcceEEeccCccCCceEE----EcCCCCCcccEEEeccccCccc-----eeeCCCccccccEEeeecCC
Q 037964 142 HLLVLKLKQNSFSRRKLA----CCSGGFPCLKFLHLKSMLWLDE-----WTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~i~~c~ 201 (202)
+|+.+++.++....++.. ...+.+|+|+.|.+..|. .+. +.......|.|.+|++++|.
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred hheeecccccccccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 999999987766543321 122348999999988887 321 12223447889999988874
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.39 E-value=1.8e-07 Score=76.08 Aligned_cols=160 Identities=24% Similarity=0.248 Sum_probs=109.1
Q ss_pred CCCccccccHHHhccc-cccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMH-KLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~-~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
..+.++++|+....+. +|+.|++++ +....+|..++.+++|+.|........ +.. .+.+++|+.|+++++. .
T Consensus 124 ~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~-~~~~~~L~~L~ls~N~---i 198 (394)
T COG4886 124 DNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL-LSNLSNLNNLDLSGNK---I 198 (394)
T ss_pred CCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCchhhhhhhh-hhhhhhhhheeccCCc---c
Confidence 4678899999888885 999999999 777777767899999999986665554 433 4588999999999995 7
Q ss_pred HHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCc
Q 037964 79 SVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRR 156 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 156 (202)
..+|..+.....|+.+.+.++... .. .+.. +.++..+.+..+++... +..++.+++++.|+++.|....-
T Consensus 199 ~~l~~~~~~~~~L~~l~~~~N~~~------~~~~~~~~-~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~~s~n~i~~i 270 (394)
T COG4886 199 SDLPPEIELLSALEELDLSNNSII------ELLSSLSN-LKNLSGLELSNNKLEDL-PESIGNLSNLETLDLSNNQISSI 270 (394)
T ss_pred ccCchhhhhhhhhhhhhhcCCcce------ecchhhhh-cccccccccCCceeeec-cchhccccccceecccccccccc
Confidence 778877777777888888754200 00 2334 55555555555555443 34555666677777765554321
Q ss_pred eEEEcCCCCCcccEEEecccc
Q 037964 157 KLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~~~ 177 (202)
.. .+.+.+++.|++..+.
T Consensus 271 --~~-~~~~~~l~~L~~s~n~ 288 (394)
T COG4886 271 --SS-LGSLTNLRELDLSGNS 288 (394)
T ss_pred --cc-ccccCccCEEeccCcc
Confidence 11 4556666677666654
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=4.8e-07 Score=77.80 Aligned_cols=102 Identities=21% Similarity=0.191 Sum_probs=61.4
Q ss_pred ccEEEeCceeeccccccccccCCCcceecccccC--ch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEE
Q 037964 19 LRHLNFGYIKLHAHPGKYCSALENLNFISALHLS--SC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLK 95 (202)
Q Consensus 19 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~--~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 95 (202)
++.|++++|...+.+|..++.+++|+.|++.... +. |.. ++++++|+.|++++|. ..+.+|+.++++++|+.|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~--lsg~iP~~l~~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNS--FNGSIPESLGQLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCC--CCCCCchHHhcCCCCCEEE
Confidence 5667777755566667667777777777644433 23 555 7777777777777776 5666777777777777777
Q ss_pred eecCcchhhchhccc--ccccCCCCccEEEeeCCC
Q 037964 96 LVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTK 128 (202)
Q Consensus 96 l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~ 128 (202)
++++. +.|.+ .+.....++..+++.+|.
T Consensus 497 Ls~N~-----l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 LNGNS-----LSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcCCc-----ccccCChHHhhccccCceEEecCCc
Confidence 76543 23333 122212345566666654
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.26 E-value=1.5e-07 Score=72.37 Aligned_cols=107 Identities=24% Similarity=0.337 Sum_probs=56.6
Q ss_pred cCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 59 LGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
+.=+|++|.|+++.|+ . ..+ +.++.+++|+.||++++. +.... |-.. +-+.++|.++.|.+.. ...+
T Consensus 303 vKL~Pkir~L~lS~N~--i-~~v-~nLa~L~~L~~LDLS~N~-----Ls~~~Gwh~K-LGNIKtL~La~N~iE~--LSGL 370 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQNR--I-RTV-QNLAELPQLQLLDLSGNL-----LAECVGWHLK-LGNIKTLKLAQNKIET--LSGL 370 (490)
T ss_pred hhhccceeEEeccccc--e-eee-hhhhhcccceEeecccch-----hHhhhhhHhh-hcCEeeeehhhhhHhh--hhhh
Confidence 4444666666666664 1 111 225556666666665421 00000 4444 5566666666665544 3455
Q ss_pred cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 138 EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
+++-+|+.|++.+|.+...+-....+.+|.|+.+.+.+|+
T Consensus 371 ~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 371 RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence 5666666666666665432222344556666666666666
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.25 E-value=2.6e-08 Score=81.97 Aligned_cols=135 Identities=22% Similarity=0.317 Sum_probs=74.3
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
.+.+-.||.++.++..|.+|+++. |....+|.++..+ -|+.|...+.... |.+ ++-+..|..|+.+.|. ...
T Consensus 107 ~n~~r~ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~-ig~~~tl~~ld~s~ne---i~s 180 (722)
T KOG0532|consen 107 HNCIRTIPEAICNLEALTFLDLSS-NQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEE-IGLLPTLAHLDVSKNE---IQS 180 (722)
T ss_pred hccceecchhhhhhhHHHHhhhcc-chhhcCChhhhcC-cceeEEEecCccccCCcc-cccchhHHHhhhhhhh---hhh
Confidence 344555666666666666666666 5555566555444 2444443333322 555 6655666666666663 556
Q ss_pred HHHHhccCCCccEEEeecCcchhhchhccc--ccccC-CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc
Q 037964 81 LSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQF-PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~-l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
+|..++.+.+|+.|.+.++ .+ ....+ --.|.+||++.|++...| -.|.++..|++|.+..|.+
T Consensus 181 lpsql~~l~slr~l~vrRn---------~l~~lp~El~~LpLi~lDfScNkis~iP-v~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 181 LPSQLGYLTSLRDLNVRRN---------HLEDLPEELCSLPLIRLDFSCNKISYLP-VDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred chHHhhhHHHHHHHHHhhh---------hhhhCCHHHhCCceeeeecccCceeecc-hhhhhhhhheeeeeccCCC
Confidence 6666666666666655431 11 01110 114566666666666653 3556666677777765554
No 39
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.1e-07 Score=72.86 Aligned_cols=163 Identities=17% Similarity=0.138 Sum_probs=108.0
Q ss_pred HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch----hHHHcCcCCccceeeEEeecCchHHHHHHHhc
Q 037964 11 EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC----TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLC 86 (202)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 86 (202)
.-++.+++|+.|.+.++.....+...++.=.+|+.++..-.++. ..-.+.+++.|..|+++++... .+.+...+.
T Consensus 204 ~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~-~~~Vtv~V~ 282 (419)
T KOG2120|consen 204 GILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLF-TEKVTVAVA 282 (419)
T ss_pred HHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhcc-chhhhHHHh
Confidence 34678899999999994446666667777788888885555443 4444778999999999998622 222333333
Q ss_pred cC-CCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCC-CCCCCccccCCCCcceEEeccCccCCceEEEcC
Q 037964 87 EL-RCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKL-KDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCS 162 (202)
Q Consensus 87 ~l-~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 162 (202)
.. ++|+.|+++++-..+. ...+ -... +++|.+|||++|.. +.+...++.+++.|++++++.+-.....-....
T Consensus 283 hise~l~~LNlsG~rrnl~--~sh~~tL~~r-cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l 359 (419)
T KOG2120|consen 283 HISETLTQLNLSGYRRNLQ--KSHLSTLVRR-CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLEL 359 (419)
T ss_pred hhchhhhhhhhhhhHhhhh--hhHHHHHHHh-CCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeee
Confidence 33 5788888876311000 0011 2344 89999999999844 444455677999999999974333222223345
Q ss_pred CCCCcccEEEecccc
Q 037964 163 GGFPCLKFLHLKSML 177 (202)
Q Consensus 163 ~~~~~L~~L~l~~~~ 177 (202)
...|+|.+|++.+|-
T Consensus 360 ~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 360 NSKPSLVYLDVFGCV 374 (419)
T ss_pred ccCcceEEEEecccc
Confidence 678999999999875
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.19 E-value=1.6e-06 Score=51.37 Aligned_cols=41 Identities=29% Similarity=0.404 Sum_probs=35.5
Q ss_pred ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCc
Q 037964 111 AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNS 152 (202)
Q Consensus 111 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 152 (202)
++.. +++|+.|++++|++...++..+.++++|++|++++|.
T Consensus 20 ~f~~-l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 20 SFSN-LPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTTT-GTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred HHcC-CCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4666 8899999999999988888899999999999998775
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.08 E-value=1.4e-06 Score=67.14 Aligned_cols=128 Identities=20% Similarity=0.255 Sum_probs=76.3
Q ss_pred ccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccE
Q 037964 15 KMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDS 93 (202)
Q Consensus 15 ~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 93 (202)
..+.|+.+|+++ |....+-..+.-++.++.|+...++.. +.. +..+++|..|++++|. ...+-..=.++.+.+.
T Consensus 282 TWq~LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~---Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 282 TWQELTELDLSG-NLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL---LAECVGWHLKLGNIKT 356 (490)
T ss_pred hHhhhhhccccc-cchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch---hHhhhhhHhhhcCEee
Confidence 345667777777 555555555555667777665554444 555 6667777777777774 3333333445556666
Q ss_pred EEeecCc-chhhchhcccccccCCCCccEEEeeCCCCCCC-CCccccCCCCcceEEeccCccC
Q 037964 94 LKLVNES-NMLGILQIDIAEYQFPQSLTHLSLTNTKLKDD-PMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 94 L~l~~~~-~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
|.+..+. +. ++ .+.. +.+|..|++++|++... ....++++|.|+.+.+.+|...
T Consensus 357 L~La~N~iE~---LS---GL~K-LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 357 LKLAQNKIET---LS---GLRK-LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eehhhhhHhh---hh---hhHh-hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 6665421 00 11 2445 66677777777766542 2456677777777777766654
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.02 E-value=7.4e-07 Score=73.65 Aligned_cols=134 Identities=19% Similarity=0.207 Sum_probs=80.2
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+.|.+..+|..+..|+ |+.|.+++ |....+|.+++.+..|.+|+...+..- +++ ++.+.+|+.|++..|. ..
T Consensus 129 s~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn~---l~ 202 (722)
T KOG0532|consen 129 SSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRNH---LE 202 (722)
T ss_pred ccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhhh---hh
Confidence 4566666777666554 67777777 667777777776667777664444432 677 7777777777777774 56
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCc--cccCCCCcceEEec
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMP--TLEKLPHLLVLKLK 149 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~ 149 (202)
.+|..+..+ .|.+||++.+.- ..+ .+.. +.+|+.|.|.+|.+..-+.. .-+++.--++|+.+
T Consensus 203 ~lp~El~~L-pLi~lDfScNki------s~iPv~fr~-m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~q 268 (722)
T KOG0532|consen 203 DLPEELCSL-PLIRLDFSCNKI------SYLPVDFRK-MRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQ 268 (722)
T ss_pred hCCHHHhCC-ceeeeecccCce------eecchhhhh-hhhheeeeeccCCCCCChHHHHhccceeeeeeecch
Confidence 667666644 466677763210 011 4455 67777777777766553321 22233334455554
No 43
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.89 E-value=1.9e-06 Score=74.57 Aligned_cols=35 Identities=26% Similarity=0.260 Sum_probs=15.5
Q ss_pred CccceeeEEeecCchHHHHHHHhccCCCccEEEeec
Q 037964 63 PNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 98 (202)
|+|+.|.+.+.. ...+++.....++++|..||+++
T Consensus 148 PsL~sL~i~~~~-~~~~dF~~lc~sFpNL~sLDIS~ 182 (699)
T KOG3665|consen 148 PSLRSLVISGRQ-FDNDDFSQLCASFPNLRSLDISG 182 (699)
T ss_pred cccceEEecCce-ecchhHHHHhhccCccceeecCC
Confidence 555555554432 11223334444445555555544
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.69 E-value=7.2e-07 Score=75.77 Aligned_cols=152 Identities=23% Similarity=0.243 Sum_probs=80.2
Q ss_pred cHHHhccccccEEEeCceeeccccccccccC-CCcceeccccc-----------Cc-------h---------------h
Q 037964 10 PEDIWKMHKLRHLNFGYIKLHAHPGKYCSAL-ENLNFISALHL-----------SS-------C---------------T 55 (202)
Q Consensus 10 p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l-~~L~~L~~~~~-----------~~-------~---------------~ 55 (202)
|-+|..+..||+|.+.+|+... .+++..+ .+|++|--.+. .+ | +
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~m 179 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLM 179 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhH
Confidence 6677888999999999965433 3333333 23443321000 00 0 2
Q ss_pred HHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCC
Q 037964 56 RDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDD 132 (202)
Q Consensus 56 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~ 132 (202)
++.+.=++.|+.|++++|+ +.+ +- .+..+++|++||++++. -..+ .+.. .+|+.|.+++|-+..
T Consensus 180 D~SLqll~ale~LnLshNk--~~~-v~-~Lr~l~~LkhLDlsyN~------L~~vp~l~~~g--c~L~~L~lrnN~l~t- 246 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNK--FTK-VD-NLRRLPKLKHLDLSYNC------LRHVPQLSMVG--CKLQLLNLRNNALTT- 246 (1096)
T ss_pred HHHHHHHHHhhhhccchhh--hhh-hH-HHHhcccccccccccch------hccccccchhh--hhheeeeecccHHHh-
Confidence 2223334566666666664 222 11 55566666666666521 0000 1111 236666666665554
Q ss_pred CCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 133 PMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 133 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
...+.++.+|+.|++++|.+.+-.--.+...+..|+.|++.+|+
T Consensus 247 -L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 247 -LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 34555677777777777776542211233446677777777777
No 45
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.68 E-value=2.2e-05 Score=59.77 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=56.9
Q ss_pred HHhccccccEEEeCceeecccccc----ccccCCCcceeccccc--Cc--h--------hHHHcCcCCccceeeEEeec-
Q 037964 12 DIWKMHKLRHLNFGYIKLHAHPGK----YCSALENLNFISALHL--SS--C--------TRDILGRLPNLQSLKIFEDL- 74 (202)
Q Consensus 12 ~~~~l~~L~~L~l~~~~~~~~~p~----~l~~l~~L~~L~~~~~--~~--~--------~~~~l~~l~~L~~L~l~~~~- 74 (202)
.+..+..+..+++++|++...-.. .|.+-.+|+.-+..+. .. . ...|+.++|+|++.+++.|.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 355678899999999655443322 3444444444331111 10 1 22347889999999999987
Q ss_pred -CchHHHHHHHhccCCCccEEEeecC
Q 037964 75 -SHYQSVLSKSLCELRCLDSLKLVNE 99 (202)
Q Consensus 75 -~~~~~~~~~~l~~l~~L~~L~l~~~ 99 (202)
......+-+.+++...|.+|.++++
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~Nn 130 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNN 130 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecC
Confidence 2235566677888899999999885
No 46
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.60 E-value=3.6e-05 Score=66.82 Aligned_cols=126 Identities=18% Similarity=0.143 Sum_probs=75.3
Q ss_pred CccceeeEEeecCchHHHHHHHhcc-CCCccEEEeec----CcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 63 PNLQSLKIFEDLSHYQSVLSKSLCE-LRCLDSLKLVN----ESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 63 ~~L~~L~l~~~~~~~~~~~~~~l~~-l~~L~~L~l~~----~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
.+|++|++++.. ......+..++. +|.|++|.+.+ +++... .... +++|..||+++++++.. ..+
T Consensus 122 ~nL~~LdI~G~~-~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~------lc~s-FpNL~sLDIS~TnI~nl--~GI 191 (699)
T KOG3665|consen 122 QNLQHLDISGSE-LFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ------LCAS-FPNLRSLDISGTNISNL--SGI 191 (699)
T ss_pred HhhhhcCccccc-hhhccHHHHHhhhCcccceEEecCceecchhHHH------Hhhc-cCccceeecCCCCccCc--HHH
Confidence 678888888753 335556666664 58888888865 111100 1334 78888888888887763 677
Q ss_pred cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccce-------eeCCCccccccEEeeec
Q 037964 138 EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEW-------TMGTKATWKLEHLIINP 199 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-------~~~~~~~~~L~~L~i~~ 199 (202)
+++.+|+.|.+.+-.+....--...-.+.+|+.|++++......- .. ...+|.|+.|+.++
T Consensus 192 S~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec-~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 192 SRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLEC-GMVLPELRFLDCSG 259 (699)
T ss_pred hccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHh-cccCccccEEecCC
Confidence 788888888887444432100112335777888888775533211 11 13467777777654
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.54 E-value=1.2e-05 Score=66.00 Aligned_cols=166 Identities=22% Similarity=0.196 Sum_probs=89.1
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
.++.|..+...+..+++|++|++++ |....+. ++..+..|+.|+...+... ... +..+++|+.+++++|+ ...
T Consensus 103 ~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n~--i~~- 176 (414)
T KOG0531|consen 103 YDNKIEKIENLLSSLVNLQVLDLSF-NKITKLE-GLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLSYNR--IVD- 176 (414)
T ss_pred cccchhhcccchhhhhcchheeccc-ccccccc-chhhccchhhheeccCcchhccC-CccchhhhcccCCcch--hhh-
Confidence 3455666655566777788888887 5544443 3555666666665555444 555 6667788888888775 222
Q ss_pred HHHH-hccCCCccEEEeecCc----chhh----c-----hhccc-ccccC--CCC--ccEEEeeCCCCCCCCCccccCCC
Q 037964 81 LSKS-LCELRCLDSLKLVNES----NMLG----I-----LQIDI-AEYQF--PQS--LTHLSLTNTKLKDDPMPTLEKLP 141 (202)
Q Consensus 81 ~~~~-l~~l~~L~~L~l~~~~----~~~~----~-----~~~~~-~~~~~--l~~--L~~L~l~~~~~~~~~~~~l~~l~ 141 (202)
+... +..+.+++.+.+..+. +.++ + ..+.+ .+..+ ... |+.+++.++.+...+ ..+..+.
T Consensus 177 ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~ 255 (414)
T KOG0531|consen 177 IENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSP-EGLENLK 255 (414)
T ss_pred hhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCcccccc-ccccccc
Confidence 2221 4566666666665521 1100 0 01111 11110 222 667777777666532 4455666
Q ss_pred CcceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 142 HLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 142 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
.++.+++..+..... ......+.+..++..++.
T Consensus 256 ~l~~l~~~~n~~~~~---~~~~~~~~~~~~~~~~~~ 288 (414)
T KOG0531|consen 256 NLPVLDLSSNRISNL---EGLERLPKLSELWLNDNK 288 (414)
T ss_pred cccccchhhcccccc---ccccccchHHHhccCcch
Confidence 677777764444321 122345555556555555
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.40 E-value=1.1e-05 Score=66.22 Aligned_cols=60 Identities=20% Similarity=0.187 Sum_probs=28.3
Q ss_pred HhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeec
Q 037964 13 IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDL 74 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~ 74 (202)
+..+++|..|++.. +....+...+..+++|+.|+....... ... +..++.|+.|++.+|.
T Consensus 91 l~~~~~l~~l~l~~-n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~ 151 (414)
T KOG0531|consen 91 LSKLKSLEALDLYD-NKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNL 151 (414)
T ss_pred cccccceeeeeccc-cchhhcccchhhhhcchheeccccccccccc-hhhccchhhheeccCc
Confidence 44555555555555 333333322444555555543333333 333 4445555555555553
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.39 E-value=0.00021 Score=39.18 Aligned_cols=37 Identities=41% Similarity=0.696 Sum_probs=25.7
Q ss_pred CCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccC
Q 037964 117 QSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
++|+.|++++|++...+ ..++++++|++|++++|.+.
T Consensus 1 ~~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP-PELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccC-chHhCCCCCCEEEecCCCCC
Confidence 46788888888888643 34788888888888877664
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=0.00012 Score=56.62 Aligned_cols=86 Identities=27% Similarity=0.328 Sum_probs=61.6
Q ss_pred cCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc-cc-ccCCCCccEEEeeCCCCCCCCCcc-c
Q 037964 61 RLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI-AE-YQFPQSLTHLSLTNTKLKDDPMPT-L 137 (202)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~-~~~l~~L~~L~l~~~~~~~~~~~~-l 137 (202)
..+.++.+++.+|....+.++...+.++|.|+.|+++.++ +...| .. .. ..+|+.|.|.+..++...... +
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-----L~s~I~~lp~p-~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-----LSSDIKSLPLP-LKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-----CCCccccCccc-ccceEEEEEcCCCCChhhhhhhh
Confidence 3478899999999755677888888999999999998643 11112 11 23 568888888888877655443 4
Q ss_pred cCCCCcceEEeccCc
Q 037964 138 EKLPHLLVLKLKQNS 152 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~ 152 (202)
..+|.++.|+++.|.
T Consensus 143 ~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 143 DDLPKVTELHMSDNS 157 (418)
T ss_pred hcchhhhhhhhccch
Confidence 478888888888774
No 51
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.33 E-value=0.0001 Score=56.92 Aligned_cols=164 Identities=18% Similarity=0.173 Sum_probs=83.7
Q ss_pred HHHhccccccEEEeCceeeccccccccccCCCcceecccccC-ch--hHHHcCcCCccceeeEEeecCchHHHHH---HH
Q 037964 11 EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLS-SC--TRDILGRLPNLQSLKIFEDLSHYQSVLS---KS 84 (202)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~---~~ 84 (202)
.-+.+|+.|+.|+++.|-....+...-..+.+|++|...... .| ....+..+|.++.|.++.|+ .+.+. ..
T Consensus 91 ~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~---~rq~n~Dd~c 167 (418)
T KOG2982|consen 91 AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS---LRQLNLDDNC 167 (418)
T ss_pred HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch---hhhhcccccc
Confidence 345688888888888832222221111344566666543332 22 33336778888888888874 11111 11
Q ss_pred hccC-CCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCC-ccccCCCCcceEEeccCccCCceEEEc
Q 037964 85 LCEL-RCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPM-PTLEKLPHLLVLKLKQNSFSRRKLACC 161 (202)
Q Consensus 85 l~~l-~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~ 161 (202)
+..+ +.+..++...+... .+-.+ -+...++++..+-+..|++..... .....+|.+..|.++.+++....-.-.
T Consensus 168 ~e~~s~~v~tlh~~~c~~~---~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~ 244 (418)
T KOG2982|consen 168 IEDWSTEVLTLHQLPCLEQ---LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDA 244 (418)
T ss_pred ccccchhhhhhhcCCcHHH---HHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHH
Confidence 1122 13444444332110 00000 122226777777777776665432 233356667677777665532110112
Q ss_pred CCCCCcccEEEeccccCcc
Q 037964 162 SGGFPCLKFLHLKSMLWLD 180 (202)
Q Consensus 162 ~~~~~~L~~L~l~~~~~l~ 180 (202)
..+|+.|..|.+..++.+.
T Consensus 245 Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 245 LNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HcCCchhheeeccCCcccc
Confidence 3468888888877777444
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.24 E-value=0.00067 Score=49.58 Aligned_cols=82 Identities=21% Similarity=0.091 Sum_probs=44.2
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccce----eeCCCcccc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEW----TMGTKATWK 191 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~----~~~~~~~~~ 191 (202)
++.|.+|.+.+|.+....+....-+|+|..|.+.+|++..-.=--....+|.|++|.+-+|+ .+.. -.....+|+
T Consensus 63 l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~ 141 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLYKLPS 141 (233)
T ss_pred ccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEEecCc
Confidence 56666666666666665555545566666666665554321101123346666666666665 3221 112344666
Q ss_pred ccEEeee
Q 037964 192 LEHLIIN 198 (202)
Q Consensus 192 L~~L~i~ 198 (202)
|+.|++.
T Consensus 142 l~~LDF~ 148 (233)
T KOG1644|consen 142 LRTLDFQ 148 (233)
T ss_pred ceEeehh
Confidence 6666654
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.15 E-value=0.00033 Score=38.43 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=27.4
Q ss_pred CCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccce
Q 037964 141 PHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEW 182 (202)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 182 (202)
++|++|++++|.+.. ++...+.+++|+.|++++|+ +..+
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~-i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP-ISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC-CSBE
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC-CCCC
Confidence 478889998888764 34346788999999999887 6544
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.99 E-value=2.5e-05 Score=66.75 Aligned_cols=123 Identities=21% Similarity=0.200 Sum_probs=80.9
Q ss_pred ccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCC
Q 037964 64 NLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPH 142 (202)
Q Consensus 64 ~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 142 (202)
.|...+.+.|+ ...+-.++.-++.++.|+++++.- ..+ .+.. ++.|++|||++|.+...+--...++ +
T Consensus 165 ~L~~a~fsyN~---L~~mD~SLqll~ale~LnLshNk~------~~v~~Lr~-l~~LkhLDlsyN~L~~vp~l~~~gc-~ 233 (1096)
T KOG1859|consen 165 KLATASFSYNR---LVLMDESLQLLPALESLNLSHNKF------TKVDNLRR-LPKLKHLDLSYNCLRHVPQLSMVGC-K 233 (1096)
T ss_pred hHhhhhcchhh---HHhHHHHHHHHHHhhhhccchhhh------hhhHHHHh-cccccccccccchhccccccchhhh-h
Confidence 45666777774 666777888889999999985320 011 3555 8899999999998887653333344 4
Q ss_pred cceEEeccCccCCceEEEcCCCCCcccEEEeccccCccce-ee-CCCccccccEEeeecCC
Q 037964 143 LLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEW-TM-GTKATWKLEHLIINPCA 201 (202)
Q Consensus 143 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~-~~~~~~~L~~L~i~~c~ 201 (202)
|..|.+++|.... -...+++.+|+.|++++|- +.+. .. ..+.+..|..|.+.++|
T Consensus 234 L~~L~lrnN~l~t---L~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 234 LQLLNLRNNALTT---LRGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred heeeeecccHHHh---hhhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHhhcCCc
Confidence 9999998666542 1234678899999999876 3221 11 12445567777776654
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.98 E-value=0.0046 Score=50.43 Aligned_cols=135 Identities=17% Similarity=0.071 Sum_probs=68.7
Q ss_pred HhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccCC
Q 037964 13 IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELR 89 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~ 89 (202)
+..+.++++|++++ +....+|. + -.+|++|...+...- |.. + -++|++|++.+|. ....+|.
T Consensus 48 ~~~~~~l~~L~Is~-c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs--~L~sLP~------ 112 (426)
T PRK15386 48 IEEARASGRLYIKD-CDIESLPV-L--PNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCP--EISGLPE------ 112 (426)
T ss_pred HHHhcCCCEEEeCC-CCCcccCC-C--CCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcc--ccccccc------
Confidence 45678999999999 45556662 2 235777764432211 322 2 1578899998875 3444554
Q ss_pred CccEEEeecCcchhhchhcccccccCCCCccEEEeeCCC-CCCCCCccccCC-CCcceEEeccCccCCceEEEcCCCCCc
Q 037964 90 CLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTK-LKDDPMPTLEKL-PHLLVLKLKQNSFSRRKLACCSGGFPC 167 (202)
Q Consensus 90 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~ 167 (202)
.|+.|++.... ...+..++++|+.|.+.+++ ....... ..+ ++|++|+++++.... + +.+-..+
T Consensus 113 sLe~L~L~~n~--------~~~L~~LPssLk~L~I~~~n~~~~~~lp--~~LPsSLk~L~Is~c~~i~--L--P~~LP~S 178 (426)
T PRK15386 113 SVRSLEIKGSA--------TDSIKNVPNGLTSLSINSYNPENQARID--NLISPSLKTLSLTGCSNII--L--PEKLPES 178 (426)
T ss_pred ccceEEeCCCC--------CcccccCcchHhheeccccccccccccc--cccCCcccEEEecCCCccc--C--ccccccc
Confidence 45566664311 00123325567777664322 1110000 012 357777776444221 1 1112246
Q ss_pred ccEEEeccc
Q 037964 168 LKFLHLKSM 176 (202)
Q Consensus 168 L~~L~l~~~ 176 (202)
|+.|++..+
T Consensus 179 Lk~L~ls~n 187 (426)
T PRK15386 179 LQSITLHIE 187 (426)
T ss_pred CcEEEeccc
Confidence 777776654
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.86 E-value=0.00021 Score=53.99 Aligned_cols=107 Identities=17% Similarity=0.181 Sum_probs=57.7
Q ss_pred ccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc-ccccC
Q 037964 38 SALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQF 115 (202)
Q Consensus 38 ~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~ 115 (202)
....+|+.+...++.-. ... +..|++|++|.++.|.......+.-...++++|++++++++.-. .--.+ ....
T Consensus 40 d~~~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~---~lstl~pl~~- 114 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK---DLSTLRPLKE- 114 (260)
T ss_pred ccccchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc---cccccchhhh-
Confidence 34445555554444433 555 66778888888888742255555555566677777777653100 00000 3344
Q ss_pred CCCccEEEeeCCCCCCCC---CccccCCCCcceEEec
Q 037964 116 PQSLTHLSLTNTKLKDDP---MPTLEKLPHLLVLKLK 149 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~---~~~l~~l~~L~~L~l~ 149 (202)
+.+|..|++.+|...... -..+.-+++|++|+-.
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 566677777777555421 1133345666665553
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.59 E-value=0.0034 Score=45.99 Aligned_cols=37 Identities=24% Similarity=0.235 Sum_probs=20.7
Q ss_pred cCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEee
Q 037964 59 LGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLV 97 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 97 (202)
+..++.|..|.+..|+ ..+.-|.--..+++|+.|.++
T Consensus 60 lp~l~rL~tLll~nNr--It~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNNR--ITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred CCCccccceEEecCCc--ceeeccchhhhccccceEEec
Confidence 6666777777777776 444333333333445555554
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.57 E-value=0.00027 Score=48.62 Aligned_cols=76 Identities=14% Similarity=0.131 Sum_probs=40.3
Q ss_pred ccccEEEeCceeecccccccccc-CCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccE
Q 037964 17 HKLRHLNFGYIKLHAHPGKYCSA-LENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDS 93 (202)
Q Consensus 17 ~~L~~L~l~~~~~~~~~p~~l~~-l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 93 (202)
..|+..++++ |....+|+.+.. .+-+++|+..+.... |.+ +..++.||.|+++.|. ....|..+.++.++..
T Consensus 53 ~el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~---l~~~p~vi~~L~~l~~ 127 (177)
T KOG4579|consen 53 YELTKISLSD-NGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNP---LNAEPRVIAPLIKLDM 127 (177)
T ss_pred ceEEEEeccc-chhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCc---cccchHHHHHHHhHHH
Confidence 3444456666 444444444322 234455543333322 666 6667777777777664 4445555555555555
Q ss_pred EEee
Q 037964 94 LKLV 97 (202)
Q Consensus 94 L~l~ 97 (202)
|+..
T Consensus 128 Lds~ 131 (177)
T KOG4579|consen 128 LDSP 131 (177)
T ss_pred hcCC
Confidence 5554
No 59
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.35 E-value=0.0031 Score=48.42 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=18.6
Q ss_pred CCccEEEeeCCCCCCCCCc-----cccCCCCcceEEeccCcc
Q 037964 117 QSLTHLSLTNTKLKDDPMP-----TLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~-----~l~~l~~L~~L~l~~~~~ 153 (202)
.+|+.+.+..|.+...+.. .+..+.+|+.|++++|.+
T Consensus 185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 4555555655555543322 123445566666655554
No 60
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.22 E-value=0.0012 Score=53.22 Aligned_cols=85 Identities=24% Similarity=0.332 Sum_probs=42.9
Q ss_pred CCCccEEEeeCCCCCCCC-Ccccc-CCCCcceEEeccCcc-CCce---EEEcCCCCCcccEEEeccccCccceeeC-CCc
Q 037964 116 PQSLTHLSLTNTKLKDDP-MPTLE-KLPHLLVLKLKQNSF-SRRK---LACCSGGFPCLKFLHLKSMLWLDEWTMG-TKA 188 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~-~~~l~-~l~~L~~L~l~~~~~-~~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~ 188 (202)
.+.|+.+++..+....+. ...++ +++.|+.+.+++... .+++ +.........|+.+.+.+++...+-..+ ...
T Consensus 345 ~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~ 424 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSI 424 (483)
T ss_pred ChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhh
Confidence 455666666555333222 22222 566777777764332 2221 1122234666777777777754432211 234
Q ss_pred cccccEEeeecC
Q 037964 189 TWKLEHLIINPC 200 (202)
Q Consensus 189 ~~~L~~L~i~~c 200 (202)
++.|+.+++.+|
T Consensus 425 c~~Leri~l~~~ 436 (483)
T KOG4341|consen 425 CRNLERIELIDC 436 (483)
T ss_pred Ccccceeeeech
Confidence 667777776665
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.0015 Score=50.29 Aligned_cols=90 Identities=20% Similarity=0.037 Sum_probs=60.3
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch----hHHHcCcCCccceeeEEeecCch-
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC----TRDILGRLPNLQSLKIFEDLSHY- 77 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~- 77 (202)
|+.+.+|.- ..+|+.|+.|.|+- |....+. .+..+++|++|++-.+.+. ..- +.++|+||.|.|..|....
T Consensus 28 g~~L~DIsi-c~kMp~lEVLsLSv-NkIssL~-pl~rCtrLkElYLRkN~I~sldEL~Y-LknlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 28 GCGLDDISI-CEKMPLLEVLSLSV-NKISSLA-PLQRCTRLKELYLRKNCIESLDELEY-LKNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred CCCccHHHH-HHhcccceeEEeec-cccccch-hHHHHHHHHHHHHHhcccccHHHHHH-HhcCchhhhHhhccCCcccc
Confidence 345555433 67899999999999 5555554 3788889999886555433 444 8899999999999887221
Q ss_pred --HHHHHHHhccCCCccEEEe
Q 037964 78 --QSVLSKSLCELRCLDSLKL 96 (202)
Q Consensus 78 --~~~~~~~l~~l~~L~~L~l 96 (202)
...-...+..+|+|+.||=
T Consensus 104 ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 104 AGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred cchhHHHHHHHHcccchhccC
Confidence 1222234556667776653
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.10 E-value=0.0034 Score=47.53 Aligned_cols=61 Identities=25% Similarity=0.262 Sum_probs=36.6
Q ss_pred CCCccEEEeeCC--CCCCCCCcccc-CCCCcceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 116 PQSLTHLSLTNT--KLKDDPMPTLE-KLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 116 l~~L~~L~l~~~--~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
+++|+.|.++.| ++... +..+. .+|+|++++++.|....-.--.....+++|..|++.+|+
T Consensus 64 Lp~LkkL~lsdn~~~~~~~-l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGG-LEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCCccccccc-ceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 567778888777 44443 33333 567888888877776531101123346667777777776
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.09 E-value=0.00029 Score=48.45 Aligned_cols=61 Identities=26% Similarity=0.303 Sum_probs=44.6
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccC
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLW 178 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 178 (202)
..+|+..+|++|.+...+...-.++|.++.+++.+|.+.+ +|......|.|+.|+++.|+.
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPL 112 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCcc
Confidence 5677888888888887765555577788888888666643 344456678888888888873
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.02 E-value=0.00029 Score=56.63 Aligned_cols=62 Identities=13% Similarity=-0.047 Sum_probs=34.0
Q ss_pred HhccccccEEEeCceeecccc-cccc-ccCCCcceecccccCch----hHHHcCcCCccceeeEEeec
Q 037964 13 IWKMHKLRHLNFGYIKLHAHP-GKYC-SALENLNFISALHLSSC----TRDILGRLPNLQSLKIFEDL 74 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~-p~~l-~~l~~L~~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~ 74 (202)
-.+++++++|.+.+|.....- -..+ ..+.+|+++.......+ ....-..+++|.+++++++.
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~ 227 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCP 227 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCc
Confidence 456788888888884322111 1111 44566777664443222 22212356778888887776
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.00027 Score=54.20 Aligned_cols=60 Identities=23% Similarity=0.253 Sum_probs=24.7
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
++.|+.|.|+.|+++. ...+.++.+|+.|++..|++..-.--.-..++|+|+.|++..|+
T Consensus 40 Mp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENP 99 (388)
T KOG2123|consen 40 MPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENP 99 (388)
T ss_pred cccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCC
Confidence 3444444444444443 23344444444444444443221101122344555555554444
No 66
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.98 E-value=0.017 Score=47.27 Aligned_cols=32 Identities=22% Similarity=0.187 Sum_probs=20.8
Q ss_pred CcccEEEeccccCccceeeCCCccccccEEeeecC
Q 037964 166 PCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200 (202)
Q Consensus 166 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c 200 (202)
++|++|.+.+|... ..+ .+-..+|+.|++..+
T Consensus 156 sSLk~L~Is~c~~i-~LP--~~LP~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNI-ILP--EKLPESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcc-cCc--ccccccCcEEEeccc
Confidence 57999999988733 222 122347888887654
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.69 E-value=0.0086 Score=27.39 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=15.9
Q ss_pred cccEEEeCceeecccccccccc
Q 037964 18 KLRHLNFGYIKLHAHPGKYCSA 39 (202)
Q Consensus 18 ~L~~L~l~~~~~~~~~p~~l~~ 39 (202)
+|++|++++|.+. .+|.++++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 5899999995445 78876654
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.44 E-value=0.0016 Score=54.17 Aligned_cols=136 Identities=19% Similarity=0.132 Sum_probs=75.3
Q ss_pred cCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecC-cchhhchhccc---ccccCCCCccEEEeeCCC-CCCCCCc
Q 037964 61 RLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNE-SNMLGILQIDI---AEYQFPQSLTHLSLTNTK-LKDDPMP 135 (202)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~-~~~~~~~ 135 (202)
..+.|+.+.+..+.......+-......++|+.|+++.+ ..... .+.. .... +++|+.++++++. +++....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~-~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITL--SPLLLLLLLSI-CRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCccccccc--chhHhhhhhhh-cCCcCccchhhhhccCchhHH
Confidence 467777777776642222224556666778888887641 00000 0000 1223 6778888888876 5655555
Q ss_pred ccc-CCCCcceEEeccCc-cCCceEEEcCCCCCcccEEEeccccCccc--eeeCCCccccccEEeeec
Q 037964 136 TLE-KLPHLLVLKLKQNS-FSRRKLACCSGGFPCLKFLHLKSMLWLDE--WTMGTKATWKLEHLIINP 199 (202)
Q Consensus 136 ~l~-~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~i~~ 199 (202)
.++ .+++|+.|.+..+. ..+..+......+++|++|+++.|..+.+ +......+|.++.+.+..
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 555 47788888865333 34444444455678888888888775422 111123355555554443
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.32 E-value=0.0033 Score=52.22 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=19.5
Q ss_pred CCccceeeEEeecCchHHHHHHHhccCCCccEEEeec
Q 037964 62 LPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 98 (202)
+++|+.|.+..+.......+.....+++.|+.|+++.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~ 304 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSG 304 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeec
Confidence 5566666654443223344444455556666666655
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.05 E-value=0.00094 Score=48.77 Aligned_cols=83 Identities=14% Similarity=0.141 Sum_probs=49.2
Q ss_pred ccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc-CCceEEEcCCCCCcccEEEeccccCccce-eeCCCccccccEEe
Q 037964 119 LTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF-SRRKLACCSGGFPCLKFLHLKSMLWLDEW-TMGTKATWKLEHLI 196 (202)
Q Consensus 119 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~ 196 (202)
++.++=+++.+...+.+-+.++++++.|++..+.. .+..+....+.+++|+.|+++.|+.+++- -.-...+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 45555566666666666677777777777763332 22222333446778888888877765432 11234567777777
Q ss_pred eecCC
Q 037964 197 INPCA 201 (202)
Q Consensus 197 i~~c~ 201 (202)
+.+.+
T Consensus 183 l~~l~ 187 (221)
T KOG3864|consen 183 LYDLP 187 (221)
T ss_pred hcCch
Confidence 66554
No 71
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.69 E-value=0.047 Score=36.81 Aligned_cols=82 Identities=12% Similarity=0.188 Sum_probs=35.3
Q ss_pred HHHhccccccEEEeCceeecccccc-ccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccC
Q 037964 11 EDIWKMHKLRHLNFGYIKLHAHPGK-YCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCEL 88 (202)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l 88 (202)
.++.++.+|+.+.+.. . ...++. .+.++.+++.+.....-.. ...++..+++|+.+.+... ....-...+..+
T Consensus 6 ~~F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~~~---~~~i~~~~F~~~ 80 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFPNN---LKSIGDNAFSNC 80 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEETST---T-EE-TTTTTT-
T ss_pred HHHhCCCCCCEEEECC-C-eeEeChhhcccccccccccccccccccceeeeeccccccccccccc---cccccccccccc
Confidence 3466777777777765 3 223333 3566667776653322111 3333666666777776432 122122344445
Q ss_pred CCccEEEee
Q 037964 89 RCLDSLKLV 97 (202)
Q Consensus 89 ~~L~~L~l~ 97 (202)
++++.+++.
T Consensus 81 ~~l~~i~~~ 89 (129)
T PF13306_consen 81 TNLKNIDIP 89 (129)
T ss_dssp TTECEEEET
T ss_pred ccccccccC
Confidence 566666553
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=0.014 Score=42.79 Aligned_cols=83 Identities=23% Similarity=0.233 Sum_probs=52.2
Q ss_pred cceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhc-hhcccccccCCCCccEEEeeCC-CCCCCCCccccCCCC
Q 037964 65 LQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGI-LQIDIAEYQFPQSLTHLSLTNT-KLKDDPMPTLEKLPH 142 (202)
Q Consensus 65 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~ 142 (202)
+..++.++.. ...+-.+-+..++.++.|.+.++..+-|| +. .+....++|+.|+|++| +++..+...+.++++
T Consensus 103 IeaVDAsds~--I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~---~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 103 IEAVDASDSS--IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLE---RLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred EEEEecCCch--HHHHHHHHHhccchhhhheeccccchhhHHHH---HhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 4456665555 55556666666777777777653211110 00 13333678888888877 777777778888888
Q ss_pred cceEEeccCc
Q 037964 143 LLVLKLKQNS 152 (202)
Q Consensus 143 L~~L~l~~~~ 152 (202)
|+.|.+++-.
T Consensus 178 Lr~L~l~~l~ 187 (221)
T KOG3864|consen 178 LRRLHLYDLP 187 (221)
T ss_pred hHHHHhcCch
Confidence 8888886433
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.60 E-value=0.12 Score=21.91 Aligned_cols=14 Identities=29% Similarity=0.285 Sum_probs=6.3
Q ss_pred cccEEEeccccCccc
Q 037964 167 CLKFLHLKSMLWLDE 181 (202)
Q Consensus 167 ~L~~L~l~~~~~l~~ 181 (202)
+|+.|++++|. ++.
T Consensus 2 ~L~~L~l~~n~-L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTS 15 (17)
T ss_dssp T-SEEEETSS---SS
T ss_pred ccCEEECCCCC-CCC
Confidence 45666666665 443
No 74
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.12 E-value=0.24 Score=23.33 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=15.0
Q ss_pred CCCccEEEeeCCCCCCCCCccc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l 137 (202)
+++|+.|++.+|++...+...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567778888887777665444
No 75
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.12 E-value=0.24 Score=23.33 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=15.0
Q ss_pred CCCccEEEeeCCCCCCCCCccc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l 137 (202)
+++|+.|++.+|++...+...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567778888887777665444
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.38 E-value=0.35 Score=22.26 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=13.2
Q ss_pred CCccceeeEEeecCchHHHHHHHhc
Q 037964 62 LPNLQSLKIFEDLSHYQSVLSKSLC 86 (202)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~l~ 86 (202)
+++|++|++++|. ..+.....++
T Consensus 1 ~~~L~~L~l~~n~--i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQ--ITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSB--EHHHHHHHHH
T ss_pred CCCCCEEEccCCc--CCHHHHHHhC
Confidence 3677888888776 6665555543
No 77
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=86.68 E-value=0.38 Score=22.70 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=9.9
Q ss_pred cccccEEeeecCCC
Q 037964 189 TWKLEHLIINPCAS 202 (202)
Q Consensus 189 ~~~L~~L~i~~c~~ 202 (202)
+|.|++|++++|++
T Consensus 1 c~~L~~L~l~~C~~ 14 (26)
T smart00367 1 CPNLRELDLSGCTN 14 (26)
T ss_pred CCCCCEeCCCCCCC
Confidence 46777787777763
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=82.41 E-value=0.027 Score=42.42 Aligned_cols=90 Identities=13% Similarity=0.061 Sum_probs=64.1
Q ss_pred cccccc-HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHH
Q 037964 5 FIDHTP-EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVL 81 (202)
Q Consensus 5 ~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (202)
.+.++| .++....+.+.||++. +....+.+.+.-++.+..++....... |.+ ++++..++.+++..| ..+..
T Consensus 29 ~~s~~~v~ei~~~kr~tvld~~s-~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d-~~q~~e~~~~~~~~n---~~~~~ 103 (326)
T KOG0473|consen 29 ELSEIPVREIASFKRVTVLDLSS-NRLVNLGKNFSILTRLVRLDLSKNQIKFLPKD-AKQQRETVNAASHKN---NHSQQ 103 (326)
T ss_pred Hhcccchhhhhccceeeeehhhh-hHHHhhccchHHHHHHHHHhccHhhHhhChhh-HHHHHHHHHHHhhcc---chhhC
Confidence 345666 4578888889999998 776666666665666666654433333 777 788888888887777 47778
Q ss_pred HHHhccCCCccEEEeecC
Q 037964 82 SKSLCELRCLDSLKLVNE 99 (202)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~ 99 (202)
|.+.++.+++++++.-.+
T Consensus 104 p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 104 PKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred CccccccCCcchhhhccC
Confidence 888888888888877553
No 79
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=81.04 E-value=1.9 Score=28.76 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=14.0
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEec
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLK 149 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 149 (202)
++.++.+.+.. .+...+...+..+++|+.+++.
T Consensus 57 ~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 57 CKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp -TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred ccccccccccc-cccccccccccccccccccccC
Confidence 44555555533 3333333445555666666654
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.75 E-value=1.4 Score=37.45 Aligned_cols=81 Identities=21% Similarity=0.059 Sum_probs=48.1
Q ss_pred CCCccEEEeeCCCCCCCC-Ccccc-CCCCcceEEeccCcc-CCceEEEcCCCCCcccEEEeccccCccceee-------C
Q 037964 116 PQSLTHLSLTNTKLKDDP-MPTLE-KLPHLLVLKLKQNSF-SRRKLACCSGGFPCLKFLHLKSMLWLDEWTM-------G 185 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~-~~~l~-~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-------~ 185 (202)
.+.+..+++++|++.... ...+. ..|+|+.|+|++|.. .......+--+...|++|.+.+|+..+...- -
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~i 296 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSAI 296 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHHH
Confidence 677888888888776532 33333 678888899987622 1111122333466788888888884332211 1
Q ss_pred CCccccccEEe
Q 037964 186 TKATWKLEHLI 196 (202)
Q Consensus 186 ~~~~~~L~~L~ 196 (202)
...||+|..|+
T Consensus 297 ~~~FPKL~~LD 307 (585)
T KOG3763|consen 297 RELFPKLLRLD 307 (585)
T ss_pred HHhcchheeec
Confidence 13577776664
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.20 E-value=1.4 Score=21.17 Aligned_cols=14 Identities=57% Similarity=0.750 Sum_probs=8.3
Q ss_pred CccEEEeeCCCCCC
Q 037964 118 SLTHLSLTNTKLKD 131 (202)
Q Consensus 118 ~L~~L~l~~~~~~~ 131 (202)
+|+.|+|++|.+..
T Consensus 3 ~L~~LdL~~N~i~~ 16 (28)
T smart00368 3 SLRELDLSNNKLGD 16 (28)
T ss_pred ccCEEECCCCCCCH
Confidence 45666666666554
No 82
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=62.06 E-value=6.6 Score=18.63 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=8.3
Q ss_pred CCccEEEeeCCCCC
Q 037964 117 QSLTHLSLTNTKLK 130 (202)
Q Consensus 117 ~~L~~L~l~~~~~~ 130 (202)
.+|+.|+++.|++.
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 45666666666554
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=61.05 E-value=6.4 Score=18.74 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=10.7
Q ss_pred CCccEEEeeCCCCCCC
Q 037964 117 QSLTHLSLTNTKLKDD 132 (202)
Q Consensus 117 ~~L~~L~l~~~~~~~~ 132 (202)
++|+.|++++|++...
T Consensus 2 ~~L~~L~vs~N~Lt~L 17 (26)
T smart00364 2 PSLKELNVSNNQLTSL 17 (26)
T ss_pred cccceeecCCCccccC
Confidence 4667777777776654
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=58.47 E-value=0.55 Score=35.64 Aligned_cols=68 Identities=6% Similarity=-0.033 Sum_probs=49.8
Q ss_pred ccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeec
Q 037964 5 FIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDL 74 (202)
Q Consensus 5 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~ 74 (202)
.+..+-.-+.-++.|.+|+++. +....+|+..+++..+.++........ |.+ .++.+.+++++.-.+.
T Consensus 53 r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s-~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 53 RLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHKNNHSQQPKS-QKKEPHPKKNEQKKTE 122 (326)
T ss_pred HHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhccchhhCCcc-ccccCCcchhhhccCc
Confidence 3334444566778888899988 777788888888877777764444433 778 8899999998887775
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=46.66 E-value=7.2 Score=33.31 Aligned_cols=63 Identities=25% Similarity=0.268 Sum_probs=42.3
Q ss_pred CCCCcceEEeccCccCC-ceEEEcCCCCCcccEEEeccccCc--cceeeCCCccccccEEeeecCC
Q 037964 139 KLPHLLVLKLKQNSFSR-RKLACCSGGFPCLKFLHLKSMLWL--DEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 139 ~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l--~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
+.|.+..+.+++|.+.. +.+......+|.|+.|+|++|... ..+.........|++|-+.+.|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCc
Confidence 67888899999877643 223334556899999999998432 1222233345678888887765
No 86
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=36.26 E-value=2.1 Score=36.15 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=18.8
Q ss_pred CCccEEEeeCCCCCCCCCc----cccCCCCcceEEeccCcc
Q 037964 117 QSLTHLSLTNTKLKDDPMP----TLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~ 153 (202)
..++.+++..|++...... .+..++.++.+.++.|..
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 3455666666655544322 333445555666654444
No 87
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=25.52 E-value=1.2e+02 Score=16.05 Aligned_cols=31 Identities=19% Similarity=0.104 Sum_probs=13.8
Q ss_pred CcccEEEeccccCccceeeCCCccc-cccEEeeec
Q 037964 166 PCLKFLHLKSMLWLDEWTMGTKATW-KLEHLIINP 199 (202)
Q Consensus 166 ~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~i~~ 199 (202)
++++.|.+.+.. -+ +...+.+| +|++|.+.+
T Consensus 12 ~~l~~L~~g~~f-n~--~i~~~~lP~sl~~L~fg~ 43 (44)
T PF05725_consen 12 SSLKSLIFGSSF-NQ--PIEPGSLPNSLKSLSFGY 43 (44)
T ss_pred CCCeEEEECCcc-Cc--cCCCCccCCCceEEEeeC
Confidence 355566663332 11 22233343 466666543
No 88
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=24.40 E-value=48 Score=34.37 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=8.4
Q ss_pred CCCccEEEeeCCCCCC
Q 037964 116 PQSLTHLSLTNTKLKD 131 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~ 131 (202)
+.+|+.|+|.+|.+..
T Consensus 18 L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 18 LCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCceEEEeeCCcccc
Confidence 4555555555555443
No 89
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=24.02 E-value=28 Score=16.55 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=7.4
Q ss_pred cCcCCccceeeEE
Q 037964 59 LGRLPNLQSLKIF 71 (202)
Q Consensus 59 l~~l~~L~~L~l~ 71 (202)
+..+|+|+.|+..
T Consensus 9 i~~LPqL~~LD~~ 21 (26)
T smart00446 9 IRLLPQLRKLDXX 21 (26)
T ss_pred HHHCCccceeccc
Confidence 4456666666543
Done!