Query 037964
Match_columns 202
No_of_seqs 102 out of 1095
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 10:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037964.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037964hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 1.6E-22 5.3E-27 159.3 10.9 187 2-201 89-288 (328)
2 4fcg_A Uncharacterized protein 99.8 2.9E-21 1E-25 152.0 9.1 186 2-199 112-310 (328)
3 1ogq_A PGIP-2, polygalacturona 99.8 5E-21 1.7E-25 149.7 6.1 192 3-201 59-279 (313)
4 1ogq_A PGIP-2, polygalacturona 99.8 1.6E-20 5.5E-25 146.8 6.3 191 4-201 87-302 (313)
5 1ozn_A Reticulon 4 receptor; N 99.8 3.7E-20 1.3E-24 142.7 7.8 189 2-201 40-236 (285)
6 3rgz_A Protein brassinosteroid 99.8 9.5E-20 3.3E-24 157.9 9.7 194 3-201 451-715 (768)
7 2o6q_A Variable lymphocyte rec 99.8 3.8E-19 1.3E-23 136.1 10.3 188 2-201 24-216 (270)
8 2z66_A Variable lymphocyte rec 99.8 1.7E-19 5.8E-24 140.2 7.7 189 2-201 36-259 (306)
9 3o6n_A APL1; leucine-rich repe 99.8 3.4E-19 1.2E-23 143.0 8.6 95 2-98 77-174 (390)
10 3oja_B Anopheles plasmodium-re 99.8 2.8E-19 9.6E-24 151.0 8.3 193 2-200 83-334 (597)
11 1xku_A Decorin; proteoglycan, 99.8 1.2E-18 4E-23 136.9 10.6 191 1-200 59-273 (330)
12 3rgz_A Protein brassinosteroid 99.8 4.2E-19 1.4E-23 153.9 8.3 190 2-201 326-549 (768)
13 2id5_A Lingo-1, leucine rich r 99.8 8.3E-19 2.8E-23 144.2 9.7 169 1-178 39-212 (477)
14 3vq2_A TLR4, TOLL-like recepto 99.8 6.3E-19 2.2E-23 148.7 9.0 188 2-201 358-556 (606)
15 3zyj_A Leucine-rich repeat-con 99.8 1.3E-18 4.5E-23 141.8 9.2 196 1-201 71-290 (440)
16 1p9a_G Platelet glycoprotein I 99.8 1.2E-18 4.2E-23 134.8 8.0 186 2-201 18-206 (290)
17 1ozn_A Reticulon 4 receptor; N 99.8 3.2E-18 1.1E-22 131.8 9.9 187 2-201 19-212 (285)
18 3zyi_A Leucine-rich repeat-con 99.7 2.1E-18 7.1E-23 141.1 8.6 196 1-201 82-301 (452)
19 3o6n_A APL1; leucine-rich repe 99.7 3.4E-18 1.2E-22 137.2 9.6 95 2-99 53-151 (390)
20 1h6u_A Internalin H; cell adhe 99.7 4.7E-18 1.6E-22 132.5 10.0 179 1-201 48-228 (308)
21 3oja_B Anopheles plasmodium-re 99.7 3.4E-18 1.2E-22 144.4 9.8 189 2-201 59-312 (597)
22 2z62_A TOLL-like receptor 4, v 99.7 1.8E-18 6.2E-23 132.6 7.1 83 116-201 148-235 (276)
23 3zyi_A Leucine-rich repeat-con 99.7 4.3E-18 1.5E-22 139.2 8.7 189 3-201 63-277 (452)
24 2z80_A TOLL-like receptor 2, v 99.7 1.8E-18 6.2E-23 137.1 6.1 190 2-201 60-312 (353)
25 4eco_A Uncharacterized protein 99.7 2.6E-18 8.9E-23 146.1 7.1 163 3-177 192-388 (636)
26 1wwl_A Monocyte differentiatio 99.7 6.2E-18 2.1E-22 132.0 8.6 172 14-201 118-307 (312)
27 3zyj_A Leucine-rich repeat-con 99.7 6.2E-18 2.1E-22 137.8 8.6 188 3-200 52-265 (440)
28 1wwl_A Monocyte differentiatio 99.7 2.2E-18 7.5E-23 134.5 5.7 181 9-201 80-285 (312)
29 3v47_A TOLL-like receptor 5B a 99.7 5.6E-18 1.9E-22 138.3 8.2 88 111-201 318-406 (455)
30 2ft3_A Biglycan; proteoglycan, 99.7 3.9E-18 1.3E-22 134.1 6.9 93 1-98 61-156 (332)
31 3t6q_A CD180 antigen; protein- 99.7 5.6E-18 1.9E-22 142.9 8.2 193 2-201 262-487 (606)
32 2xwt_C Thyrotropin receptor; s 99.7 5.1E-18 1.7E-22 127.5 7.1 185 2-201 39-237 (239)
33 3t6q_A CD180 antigen; protein- 99.7 1.1E-17 3.7E-22 141.2 9.9 197 1-201 285-511 (606)
34 4ecn_A Leucine-rich repeat pro 99.7 4.3E-18 1.5E-22 148.7 7.2 184 4-201 435-655 (876)
35 3rfs_A Internalin B, repeat mo 99.7 1.4E-17 4.8E-22 127.5 9.2 176 13-201 37-216 (272)
36 2id5_A Lingo-1, leucine rich r 99.7 1.7E-17 5.9E-22 136.3 10.1 189 1-200 63-282 (477)
37 4ecn_A Leucine-rich repeat pro 99.7 1.3E-17 4.4E-22 145.7 9.4 179 9-201 481-684 (876)
38 1xku_A Decorin; proteoglycan, 99.7 4E-17 1.4E-21 128.1 11.1 185 2-201 39-251 (330)
39 3rfs_A Internalin B, repeat mo 99.7 9.3E-18 3.2E-22 128.5 7.0 164 2-177 49-216 (272)
40 2z66_A Variable lymphocyte rec 99.7 1.1E-17 3.8E-22 129.9 6.8 163 2-177 15-186 (306)
41 3v47_A TOLL-like receptor 5B a 99.7 3.3E-17 1.1E-21 133.7 9.6 87 112-201 295-382 (455)
42 2o6q_A Variable lymphocyte rec 99.7 2.9E-17 9.8E-22 125.7 8.7 167 1-177 44-216 (270)
43 2z80_A TOLL-like receptor 2, v 99.7 1.8E-17 6.2E-22 131.3 7.2 186 2-201 39-233 (353)
44 2z62_A TOLL-like receptor 4, v 99.7 1.5E-17 5.2E-22 127.4 6.5 187 3-201 16-211 (276)
45 4fmz_A Internalin; leucine ric 99.7 4.6E-17 1.6E-21 128.5 9.4 127 59-201 217-344 (347)
46 4eco_A Uncharacterized protein 99.7 9.4E-18 3.2E-22 142.7 5.6 38 116-153 432-469 (636)
47 2ast_B S-phase kinase-associat 99.7 5.9E-18 2E-22 133.0 4.0 192 2-200 78-282 (336)
48 2z81_A CD282 antigen, TOLL-lik 99.7 1.8E-17 6.3E-22 138.2 6.9 141 3-154 14-161 (549)
49 3m19_A Variable lymphocyte rec 99.7 5.9E-17 2E-21 122.6 8.4 165 2-177 22-190 (251)
50 4fmz_A Internalin; leucine ric 99.7 1.9E-16 6.5E-21 124.9 10.7 89 2-98 52-141 (347)
51 2z81_A CD282 antigen, TOLL-lik 99.7 5.7E-17 2E-21 135.2 6.9 168 1-177 33-207 (549)
52 3m19_A Variable lymphocyte rec 99.7 3.3E-16 1.1E-20 118.5 9.7 171 17-201 14-190 (251)
53 3vq2_A TLR4, TOLL-like recepto 99.7 7.9E-17 2.7E-21 135.9 6.9 187 2-201 19-215 (606)
54 1h6t_A Internalin B; cell adhe 99.7 5.2E-16 1.8E-20 120.0 10.6 167 13-200 42-210 (291)
55 2xwt_C Thyrotropin receptor; s 99.7 3.1E-16 1.1E-20 117.7 8.7 183 5-201 22-216 (239)
56 4glp_A Monocyte differentiatio 99.7 1.3E-16 4.5E-21 124.3 6.6 176 16-201 90-305 (310)
57 2z7x_B TOLL-like receptor 1, v 99.6 2.7E-16 9.1E-21 130.5 8.5 152 38-201 321-479 (520)
58 3j0a_A TOLL-like receptor 5; m 99.6 1.8E-16 6.1E-21 138.7 7.6 186 2-200 12-214 (844)
59 3oja_A Leucine-rich immune mol 99.6 1.2E-16 4E-21 132.0 6.0 81 116-201 168-248 (487)
60 2z7x_B TOLL-like receptor 1, v 99.6 5.2E-16 1.8E-20 128.7 9.9 93 2-98 29-124 (520)
61 4ezg_A Putative uncharacterize 99.6 6.7E-16 2.3E-20 112.7 9.0 149 13-177 40-192 (197)
62 1h6u_A Internalin H; cell adhe 99.6 1.1E-15 3.9E-20 119.0 10.7 168 13-201 37-206 (308)
63 2ast_B S-phase kinase-associat 99.6 7.7E-17 2.6E-21 126.6 3.9 184 10-201 61-258 (336)
64 3o53_A Protein LRIM1, AGAP0063 99.6 2.8E-16 9.4E-21 122.9 6.8 175 14-201 31-225 (317)
65 3o53_A Protein LRIM1, AGAP0063 99.6 2.3E-16 7.8E-21 123.4 6.3 186 1-201 41-248 (317)
66 1o6v_A Internalin A; bacterial 99.6 1.8E-15 6.2E-20 124.1 11.8 78 116-200 308-385 (466)
67 3j0a_A TOLL-like receptor 5; m 99.6 9.9E-16 3.4E-20 134.0 10.6 83 116-200 289-372 (844)
68 1ziw_A TOLL-like receptor 3; i 99.6 5.3E-16 1.8E-20 132.5 8.7 189 2-201 389-620 (680)
69 2ft3_A Biglycan; proteoglycan, 99.6 2.2E-16 7.5E-21 124.1 5.7 189 2-201 41-275 (332)
70 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 7.8E-16 2.7E-20 129.0 9.4 152 38-201 350-508 (562)
71 1ziw_A TOLL-like receptor 3; i 99.6 7.5E-16 2.6E-20 131.6 9.1 130 17-153 381-516 (680)
72 3bz5_A Internalin-J, INLJ; leu 99.6 2.5E-15 8.4E-20 123.2 11.8 178 1-200 49-243 (457)
73 1o6v_A Internalin A; bacterial 99.6 2.2E-15 7.4E-20 123.6 11.0 180 1-201 184-364 (466)
74 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.3E-15 4.4E-20 127.7 9.7 93 2-98 60-155 (562)
75 3oja_A Leucine-rich immune mol 99.6 6.7E-16 2.3E-20 127.5 7.7 181 8-201 21-225 (487)
76 2z63_A TOLL-like receptor 4, v 99.6 4.6E-16 1.6E-20 130.2 6.7 185 3-200 291-504 (570)
77 2o6s_A Variable lymphocyte rec 99.6 4.7E-16 1.6E-20 114.3 5.7 171 2-190 15-189 (208)
78 1p9a_G Platelet glycoprotein I 99.6 1.1E-15 3.8E-20 118.1 7.6 164 1-177 38-206 (290)
79 1m9s_A Internalin B; cell inva 99.6 1.5E-15 5.3E-20 128.2 8.6 155 3-177 52-208 (605)
80 1h6t_A Internalin B; cell adhe 99.6 5.6E-15 1.9E-19 114.2 10.8 157 1-177 53-211 (291)
81 3bz5_A Internalin-J, INLJ; leu 99.6 6.4E-15 2.2E-19 120.7 11.5 146 10-177 35-181 (457)
82 4glp_A Monocyte differentiatio 99.6 7E-16 2.4E-20 120.2 5.4 172 16-200 63-282 (310)
83 4ezg_A Putative uncharacterize 99.6 3.8E-15 1.3E-19 108.7 8.4 140 2-155 52-195 (197)
84 2ca6_A RAN GTPase-activating p 99.6 3.4E-16 1.2E-20 125.4 2.7 95 3-99 18-132 (386)
85 2z63_A TOLL-like receptor 4, v 99.6 1.7E-15 5.8E-20 126.7 5.4 158 10-177 366-529 (570)
86 2v9t_B SLIT homolog 2 protein 99.6 6.5E-15 2.2E-19 109.4 7.2 141 2-153 19-164 (220)
87 1m9s_A Internalin B; cell inva 99.5 1.3E-14 4.5E-19 122.5 9.5 177 3-201 30-208 (605)
88 3e6j_A Variable lymphocyte rec 99.5 8.8E-15 3E-19 109.3 7.3 143 2-155 27-173 (229)
89 1jl5_A Outer protein YOPM; leu 99.5 1.8E-15 6.1E-20 123.9 3.2 173 2-200 19-205 (454)
90 1xeu_A Internalin C; cellular 99.5 1.1E-14 3.6E-19 111.1 6.9 155 2-177 27-183 (263)
91 2ca6_A RAN GTPase-activating p 99.5 1.6E-15 5.3E-20 121.5 2.2 88 112-201 212-314 (386)
92 4g8a_A TOLL-like receptor 4; l 99.5 1.2E-14 4.2E-19 122.6 7.0 142 4-155 41-187 (635)
93 2v70_A SLIT-2, SLIT homolog 2 99.5 2.4E-14 8.1E-19 106.3 7.2 143 2-154 19-166 (220)
94 4ay9_X Follicle-stimulating ho 99.5 1.8E-14 6.2E-19 114.0 6.9 190 2-199 38-255 (350)
95 4g8a_A TOLL-like receptor 4; l 99.5 3.3E-14 1.1E-18 119.9 7.8 182 10-201 390-578 (635)
96 2xot_A Amphoterin-induced prot 99.5 1.2E-14 4.2E-19 115.5 4.2 165 2-177 26-200 (361)
97 2v9t_B SLIT homolog 2 protein 99.5 8.6E-14 3E-18 103.3 7.5 145 20-177 14-163 (220)
98 1dce_A Protein (RAB geranylger 99.5 6.2E-16 2.1E-20 129.8 -5.3 180 2-196 357-566 (567)
99 3goz_A Leucine-rich repeat-con 99.5 7.6E-15 2.6E-19 116.7 1.1 82 118-200 168-263 (362)
100 3goz_A Leucine-rich repeat-con 99.4 1.6E-14 5.6E-19 114.8 2.2 192 1-201 5-236 (362)
101 3cvr_A Invasion plasmid antige 99.4 1.7E-13 5.7E-18 114.9 8.3 167 2-201 67-241 (571)
102 2o6s_A Variable lymphocyte rec 99.4 1.1E-13 3.6E-18 101.7 5.9 146 20-177 10-159 (208)
103 2v70_A SLIT-2, SLIT homolog 2 99.4 1.8E-13 6.3E-18 101.5 6.8 147 19-177 13-164 (220)
104 4ay9_X Follicle-stimulating ho 99.4 2.9E-13 9.9E-18 107.1 8.3 189 3-201 18-234 (350)
105 3g06_A SSPH2 (leucine-rich rep 99.4 3.1E-13 1.1E-17 114.5 8.5 75 117-201 221-295 (622)
106 1jl5_A Outer protein YOPM; leu 99.4 2.5E-12 8.7E-17 105.2 11.1 155 17-199 91-246 (454)
107 2ell_A Acidic leucine-rich nuc 99.4 1.6E-13 5.6E-18 97.3 3.4 131 62-201 23-158 (168)
108 1xeu_A Internalin C; cellular 99.4 1.3E-12 4.6E-17 99.4 8.6 138 1-156 48-187 (263)
109 2xot_A Amphoterin-induced prot 99.4 2.3E-13 8E-18 108.1 4.0 144 1-153 46-201 (361)
110 3e6j_A Variable lymphocyte rec 99.4 6.6E-13 2.3E-17 99.1 6.2 146 18-177 20-170 (229)
111 1z7x_W Ribonuclease inhibitor; 99.4 6.6E-14 2.3E-18 114.2 0.2 84 117-201 199-295 (461)
112 2je0_A Acidic leucine-rich nuc 99.4 4E-13 1.4E-17 93.4 4.1 126 15-149 15-148 (149)
113 2ell_A Acidic leucine-rich nuc 99.3 5.6E-13 1.9E-17 94.5 4.6 81 15-98 22-104 (168)
114 1z7x_W Ribonuclease inhibitor; 99.3 4.4E-14 1.5E-18 115.3 -1.5 86 13-98 24-122 (461)
115 1dce_A Protein (RAB geranylger 99.3 2.3E-14 7.9E-19 120.3 -3.6 171 14-201 346-544 (567)
116 3ogk_B Coronatine-insensitive 99.3 1.9E-12 6.4E-17 108.8 5.8 193 7-201 283-524 (592)
117 3g06_A SSPH2 (leucine-rich rep 99.3 5E-12 1.7E-16 107.1 8.2 64 2-74 48-112 (622)
118 2je0_A Acidic leucine-rich nuc 99.3 1.8E-13 6E-18 95.3 -0.8 130 61-199 15-149 (149)
119 3ogk_B Coronatine-insensitive 99.3 2.6E-12 9E-17 107.9 5.6 86 116-201 377-474 (592)
120 1w8a_A SLIT protein; signaling 99.3 3.4E-12 1.2E-16 92.7 5.4 125 20-155 11-140 (192)
121 4b8c_D Glucose-repressible alc 99.3 3E-13 1E-17 116.6 -1.7 107 36-154 219-329 (727)
122 2p1m_B Transport inhibitor res 99.2 2.6E-12 8.8E-17 107.9 1.7 84 116-201 431-517 (594)
123 2wfh_A SLIT homolog 2 protein 99.2 2.8E-11 9.7E-16 87.9 7.0 123 20-154 13-139 (193)
124 1w8a_A SLIT protein; signaling 99.2 1.3E-11 4.4E-16 89.6 4.3 121 1-133 15-142 (192)
125 1a9n_A U2A', U2A'; complex (nu 99.1 5.8E-12 2E-16 90.1 1.1 82 116-200 63-150 (176)
126 2o6r_A Variable lymphocyte rec 99.1 8.9E-11 3E-15 83.8 7.2 125 20-155 10-138 (177)
127 3cvr_A Invasion plasmid antige 99.1 1.1E-10 3.7E-15 98.0 8.7 157 12-201 49-218 (571)
128 2wfh_A SLIT homolog 2 protein 99.1 2.3E-11 7.9E-16 88.3 3.8 119 2-132 18-141 (193)
129 1ds9_A Outer arm dynein; leuci 99.1 2E-12 6.9E-17 94.2 -2.7 66 6-74 37-104 (198)
130 2p1m_B Transport inhibitor res 99.1 3.3E-11 1.1E-15 101.1 3.2 84 116-201 396-492 (594)
131 1a9n_A U2A', U2A'; complex (nu 99.1 1.8E-11 6.2E-16 87.5 1.3 59 13-74 15-75 (176)
132 4b8c_D Glucose-repressible alc 99.1 7.7E-11 2.6E-15 101.6 4.5 139 5-155 212-355 (727)
133 2o6r_A Variable lymphocyte rec 99.1 1.7E-10 5.8E-15 82.3 5.4 122 2-133 15-140 (177)
134 1ds9_A Outer arm dynein; leuci 99.0 4.6E-13 1.6E-17 97.6 -9.4 132 11-153 12-152 (198)
135 3g39_A Variable lymphocyte rec 98.9 5.7E-10 2E-14 79.3 2.8 101 20-132 12-117 (170)
136 2r9u_A Variable lymphocyte rec 98.9 5.8E-10 2E-14 79.6 2.8 102 20-133 15-121 (174)
137 2r9u_A Variable lymphocyte rec 98.8 1.4E-08 4.7E-13 72.4 7.2 100 66-177 15-116 (174)
138 3sb4_A Hypothetical leucine ri 98.8 8.2E-09 2.8E-13 80.7 5.5 58 16-74 48-135 (329)
139 3g39_A Variable lymphocyte rec 98.8 2.1E-08 7.3E-13 71.1 7.2 101 65-177 11-113 (170)
140 3un9_A NLR family member X1; l 98.7 5.7E-10 1.9E-14 89.0 -3.2 155 17-177 72-250 (372)
141 2ra8_A Uncharacterized protein 98.6 9.3E-09 3.2E-13 81.6 2.4 164 9-177 131-318 (362)
142 3sb4_A Hypothetical leucine ri 98.6 4.7E-07 1.6E-11 70.7 11.3 99 87-196 224-327 (329)
143 2ifg_A High affinity nerve gro 98.6 1.9E-08 6.5E-13 79.1 2.8 90 5-99 20-113 (347)
144 3un9_A NLR family member X1; l 98.5 3.2E-08 1.1E-12 78.9 2.6 151 2-156 80-254 (372)
145 3e4g_A ATP synthase subunit S, 98.5 3.2E-08 1.1E-12 70.3 1.6 86 117-202 61-151 (176)
146 2ifg_A High affinity nerve gro 98.4 2.1E-07 7.1E-12 73.1 5.6 99 68-177 13-114 (347)
147 4fdw_A Leucine rich hypothetic 98.4 7.2E-07 2.5E-11 71.7 7.9 67 5-72 167-235 (401)
148 4fdw_A Leucine rich hypothetic 98.3 2.1E-06 7.2E-11 69.0 9.1 185 2-198 188-378 (401)
149 2ra8_A Uncharacterized protein 98.3 6.4E-07 2.2E-11 71.0 5.1 140 8-155 163-321 (362)
150 1io0_A Tropomodulin; LRR prote 98.0 1.4E-06 4.8E-11 62.5 0.6 119 55-177 28-162 (185)
151 3e4g_A ATP synthase subunit S, 97.9 2.1E-05 7.3E-10 55.7 5.6 66 59-128 81-150 (176)
152 1io0_A Tropomodulin; LRR prote 97.8 1.2E-05 4.1E-10 57.5 3.6 92 59-154 61-164 (185)
153 3rw6_A Nuclear RNA export fact 97.7 2.2E-05 7.6E-10 59.5 3.6 80 14-96 167-258 (267)
154 3rw6_A Nuclear RNA export fact 97.7 1.5E-05 5.1E-10 60.5 2.0 81 113-197 167-258 (267)
155 3rfe_A Platelet glycoprotein I 96.1 0.0061 2.1E-07 40.8 4.1 38 116-153 30-67 (130)
156 4fs7_A Uncharacterized protein 95.6 0.034 1.2E-06 44.1 7.3 60 112-175 316-375 (394)
157 4fs7_A Uncharacterized protein 95.5 0.015 5.3E-07 46.1 4.8 83 59-150 293-375 (394)
158 4gt6_A Cell surface protein; l 95.2 0.0075 2.6E-07 47.9 2.1 126 37-175 261-387 (394)
159 4h09_A Hypothetical leucine ri 95.1 0.028 9.7E-07 44.2 5.2 83 59-149 236-318 (379)
160 4gt6_A Cell surface protein; l 95.1 0.042 1.5E-06 43.5 6.1 128 57-198 259-386 (394)
161 4h09_A Hypothetical leucine ri 94.8 0.024 8.1E-07 44.6 3.9 106 59-174 213-318 (379)
162 1pgv_A TMD-1, tropomodulin TMD 92.5 0.21 7.2E-06 35.8 5.1 119 55-177 33-168 (197)
163 1pgv_A TMD-1, tropomodulin TMD 90.4 0.17 5.7E-06 36.3 2.7 42 55-98 62-107 (197)
164 3rfe_A Platelet glycoprotein I 88.8 0.3 1E-05 32.3 2.9 16 59-74 51-66 (130)
165 2lz0_A Uncharacterized protein 24.3 1.2E+02 0.0041 18.5 4.1 37 112-150 16-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=1.6e-22 Score=159.26 Aligned_cols=187 Identities=21% Similarity=0.221 Sum_probs=149.6
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+++.++.+|..+.++++|++|++++ |....+|..++.+++|++|+....... |.. ++++++|++|++++|. ..+
T Consensus 89 ~~n~l~~lp~~l~~l~~L~~L~L~~-n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~L~~n~--~~~ 164 (328)
T 4fcg_A 89 RSVPLPQFPDQAFRLSHLQHMTIDA-AGLMELPDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACP--ELT 164 (328)
T ss_dssp ESSCCSSCCSCGGGGTTCSEEEEES-SCCCCCCSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEEEEEET--TCC
T ss_pred cCCCchhcChhhhhCCCCCEEECCC-CCccchhHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEECCCCC--Ccc
Confidence 4678889999999999999999999 444488988999999999986665544 667 9999999999999987 666
Q ss_pred HHHHHhcc---------CCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEe
Q 037964 80 VLSKSLCE---------LRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKL 148 (202)
Q Consensus 80 ~~~~~l~~---------l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 148 (202)
.+|..++. +++|+.|+++++. +. .+ ++.. +++|+.|++++|++...+ ..++.+++|++|++
T Consensus 165 ~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-----l~-~lp~~l~~-l~~L~~L~L~~N~l~~l~-~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTG-----IR-SLPASIAN-LQNLKSLKIRNSPLSALG-PAIHHLPKLEELDL 236 (328)
T ss_dssp CCCSCSEEEC-CCCEEESTTCCEEEEEEEC-----CC-CCCGGGGG-CTTCCEEEEESSCCCCCC-GGGGGCTTCCEEEC
T ss_pred ccChhHhhccchhhhccCCCCCEEECcCCC-----cC-cchHhhcC-CCCCCEEEccCCCCCcCc-hhhccCCCCCEEEC
Confidence 67766654 8999999998642 11 22 4666 889999999999988754 56888999999999
Q ss_pred ccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 149 KQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
++|.+.+.. +...+.+++|+.|++++|...+.++...+.+++|++|++++|+
T Consensus 237 s~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 237 RGCTALRNY-PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp TTCTTCCBC-CCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred cCCcchhhh-HHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 987776543 5566778999999999988777777777788999999999875
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=2.9e-21 Score=151.95 Aligned_cols=186 Identities=20% Similarity=0.104 Sum_probs=153.2
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccC--ch-hHHHcC---------cCCccceee
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLS--SC-TRDILG---------RLPNLQSLK 69 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~--~~-~~~~l~---------~l~~L~~L~ 69 (202)
.++.++.+|.+++++++|++|++++ |....+|..++.+++|++|+...+. +. +.. ++ .+++|++|+
T Consensus 112 ~~n~l~~lp~~~~~l~~L~~L~Ls~-n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~ 189 (328)
T 4fcg_A 112 DAAGLMELPDTMQQFAGLETLTLAR-NPLRALPASIASLNRLRELSIRACPELTELPEP-LASTDASGEHQGLVNLQSLR 189 (328)
T ss_dssp ESSCCCCCCSCGGGGTTCSEEEEES-CCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSC-SEEEC-CCCEEESTTCCEEE
T ss_pred CCCCccchhHHHhccCCCCEEECCC-CccccCcHHHhcCcCCCEEECCCCCCccccChh-HhhccchhhhccCCCCCEEE
Confidence 4678889999999999999999999 5544889899999999999865533 22 444 44 499999999
Q ss_pred EEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEe
Q 037964 70 IFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKL 148 (202)
Q Consensus 70 l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 148 (202)
+++|. .. .+|..++++++|+.|+++++. +.+.. .+.. +++|+.|++++|.+.+..+..++++++|++|++
T Consensus 190 L~~n~--l~-~lp~~l~~l~~L~~L~L~~N~-----l~~l~~~l~~-l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 190 LEWTG--IR-SLPASIANLQNLKSLKIRNSP-----LSALGPAIHH-LPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp EEEEC--CC-CCCGGGGGCTTCCEEEEESSC-----CCCCCGGGGG-CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CcCCC--cC-cchHhhcCCCCCCEEEccCCC-----CCcCchhhcc-CCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 99997 33 788899999999999998743 12111 4667 899999999999998888889999999999999
Q ss_pred ccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeec
Q 037964 149 KQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINP 199 (202)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 199 (202)
++|...+.. +...+.+++|+.|++++|...+.+|...+.+++|+.+.+..
T Consensus 261 ~~n~~~~~~-p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 261 KDCSNLLTL-PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp TTCTTCCBC-CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CCCCchhhc-chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 987776543 55567799999999999998888888888899999887753
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.82 E-value=5e-21 Score=149.69 Aligned_cols=192 Identities=16% Similarity=0.110 Sum_probs=130.5
Q ss_pred CCccc---cccHHHhccccccEEEeCc-eeeccccccccccCCCcceecccccCc--h-hHHHcCcCCccceeeEEeecC
Q 037964 3 LSFID---HTPEDIWKMHKLRHLNFGY-IKLHAHPGKYCSALENLNFISALHLSS--C-TRDILGRLPNLQSLKIFEDLS 75 (202)
Q Consensus 3 ~~~~~---~lp~~~~~l~~L~~L~l~~-~~~~~~~p~~l~~l~~L~~L~~~~~~~--~-~~~~l~~l~~L~~L~l~~~~~ 75 (202)
++.++ .+|.++.++++|++|++++ |+....+|..++.+++|++|+...... . +.. ++++++|++|++++|.
T Consensus 59 ~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N~- 136 (313)
T 1ogq_A 59 GLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNA- 136 (313)
T ss_dssp CCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSSE-
T ss_pred CCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHH-HhCCCCCCEEeCCCCc-
Confidence 44554 5788888888888888884 456667777788888888887555443 2 555 7788888888888776
Q ss_pred chHHHHHHHhccCCCccEEEeecCc---chhh-c----------------hhccc--ccccCCCCccEEEeeCCCCCCCC
Q 037964 76 HYQSVLSKSLCELRCLDSLKLVNES---NMLG-I----------------LQIDI--AEYQFPQSLTHLSLTNTKLKDDP 133 (202)
Q Consensus 76 ~~~~~~~~~l~~l~~L~~L~l~~~~---~~~~-~----------------~~~~~--~~~~~l~~L~~L~l~~~~~~~~~ 133 (202)
..+.+|..++.+++|++|+++++. .... + +.+.+ .+.. +. |+.|++++|.+.+..
T Consensus 137 -l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-l~-L~~L~Ls~N~l~~~~ 213 (313)
T 1ogq_A 137 -LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-LN-LAFVDLSRNMLEGDA 213 (313)
T ss_dssp -EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG-CC-CSEEECCSSEEEECC
T ss_pred -cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC-Cc-ccEEECcCCcccCcC
Confidence 555677777777888888777632 0000 0 11111 3344 43 777777777777666
Q ss_pred CccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 134 MPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 134 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
+..++.+++|+.|++++|.+.+.. + ....+++|++|++++|.....++.....+++|++|++++|.
T Consensus 214 ~~~~~~l~~L~~L~L~~N~l~~~~-~-~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKNSLAFDL-G-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECCBG-G-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred CHHHhcCCCCCEEECCCCceeeec-C-cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 677778888888888877775432 2 24567889999998888333556566778889999988763
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=1.6e-20 Score=146.78 Aligned_cols=191 Identities=14% Similarity=0.097 Sum_probs=141.3
Q ss_pred Cccc-cccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCc--h-hHHHcCcCCccceeeEEeecCchHH
Q 037964 4 SFID-HTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSS--C-TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 4 ~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~--~-~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+.+. .+|.+++++++|++|++++|.....+|..++.+++|++|+...... . +.. ++++++|++|++++|. ..+
T Consensus 87 n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~--l~~ 163 (313)
T 1ogq_A 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS-ISSLPNLVGITFDGNR--ISG 163 (313)
T ss_dssp TTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGG-GGGCTTCCEEECCSSC--CEE
T ss_pred CcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChH-HhcCCCCCeEECcCCc--ccC
Confidence 3444 5788888888888888888555667887888888888887555432 2 556 8888888888888886 555
Q ss_pred HHHHHhccCC-CccEEEeecCc------chhh------c------hhccc--ccccCCCCccEEEeeCCCCCCCCCcccc
Q 037964 80 VLSKSLCELR-CLDSLKLVNES------NMLG------I------LQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLE 138 (202)
Q Consensus 80 ~~~~~l~~l~-~L~~L~l~~~~------~~~~------~------~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 138 (202)
.+|..++.++ +|+.|+++++. ..+. + +.+.. .+.. +++|+.|++++|.+.... ..+.
T Consensus 164 ~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~-~~~~ 241 (313)
T 1ogq_A 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDL-GKVG 241 (313)
T ss_dssp ECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCT-TSCCSEEECCSSEECCBG-GGCC
T ss_pred cCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhc-CCCCCEEECCCCceeeec-Cccc
Confidence 6777888876 88888887631 1111 0 12222 4667 899999999999998764 3478
Q ss_pred CCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 139 KLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
.+++|++|++++|.+.+.. +.....+++|+.|++++|...+.+|.. +.+++|+.+++.+++
T Consensus 242 ~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 242 LSKNLNGLDLRNNRIYGTL-PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CCTTCCEEECCSSCCEECC-CGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ccCCCCEEECcCCcccCcC-ChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 8999999999988886543 555667999999999999833355544 779999999998875
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.81 E-value=3.7e-20 Score=142.67 Aligned_cols=189 Identities=20% Similarity=0.097 Sum_probs=125.7
Q ss_pred CCCccccccH-HHhccccccEEEeCceeeccccccccccCCCcceecccccC-ch---hHHHcCcCCccceeeEEeecCc
Q 037964 2 PLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLS-SC---TRDILGRLPNLQSLKIFEDLSH 76 (202)
Q Consensus 2 ~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~---~~~~l~~l~~L~~L~l~~~~~~ 76 (202)
.++.++.+|. .+.++++|++|++++|......|..++.+++|++|+..... .. +.. +..+++|++|++++|.
T Consensus 40 ~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~-~~~l~~L~~L~l~~n~-- 116 (285)
T 1ozn_A 40 HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT-FHGLGRLHTLHLDRCG-- 116 (285)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTT-TTTCTTCCEEECTTSC--
T ss_pred eCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHH-hcCCcCCCEEECCCCc--
Confidence 4566666664 46777777777777743444445567777777777755443 22 344 7777777777777776
Q ss_pred hHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccC
Q 037964 77 YQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
..+..+..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|++...+...+.++++|++|++++|.+.
T Consensus 117 l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 117 LQELGPGLFRGLAALQYLYLQDNA-----LQALPDDTFRD-LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred CCEECHhHhhCCcCCCEEECCCCc-----ccccCHhHhcc-CCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 444445667777778877776532 01100 3556 778888888888888776667788888888888877765
Q ss_pred CceEEEcCCCCCcccEEEeccccCccceeeC-CCccccccEEeeecCC
Q 037964 155 RRKLACCSGGFPCLKFLHLKSMLWLDEWTMG-TKATWKLEHLIINPCA 201 (202)
Q Consensus 155 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 201 (202)
+.. +.....+++|+.|++++|. +..++.. ...+++|++|++++++
T Consensus 191 ~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 191 HVH-PHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp EEC-TTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccC-HhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence 422 3345567888888888887 5555432 4567888888888765
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.80 E-value=9.5e-20 Score=157.92 Aligned_cols=194 Identities=20% Similarity=0.212 Sum_probs=134.8
Q ss_pred CCccc-cccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCc--h-hHHHcCcCCccceeeEEeecCchH
Q 037964 3 LSFID-HTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSS--C-TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 3 ~~~~~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~--~-~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
++.+. .+|.++..+++|++|++++|...+.+|..++.+++|+.|+..++.. . |.+ ++++++|++|++++|+ ..
T Consensus 451 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~--l~ 527 (768)
T 3rgz_A 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLSNNS--FS 527 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSC--CE
T ss_pred CCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH-HhcCCCCCEEECCCCc--cc
Confidence 33444 4556666666666666666444555666666666666666444432 2 555 7777777777777776 55
Q ss_pred HHHHHHhccCCCccEEEeecCc---chhh-c-------------------------------------------------
Q 037964 79 SVLSKSLCELRCLDSLKLVNES---NMLG-I------------------------------------------------- 105 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~---~~~~-~------------------------------------------------- 105 (202)
+.+|..++.+++|+.|+++++. .... +
T Consensus 528 ~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 528 GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 6677777777777777776531 0000 0
Q ss_pred ------------hhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEE
Q 037964 106 ------------LQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFL 171 (202)
Q Consensus 106 ------------~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 171 (202)
+.|.+ .+.. +++|+.|++++|++.+..+..++++++|+.|++++|.+.+.. |...+.+++|+.|
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~-l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-p~~l~~L~~L~~L 685 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDN-NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI-PDEVGDLRGLNIL 685 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSS-SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEE
T ss_pred ccccccccccceecccCchhhhc-cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC-ChHHhCCCCCCEE
Confidence 00111 2334 577899999999999888899999999999999999988765 6667789999999
Q ss_pred EeccccCccceeeCCCccccccEEeeecCC
Q 037964 172 HLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 172 ~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
++++|.....+|.....++.|++|++++|+
T Consensus 686 dLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp ECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred ECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 999998555777777888999999999873
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=3.8e-19 Score=136.11 Aligned_cols=188 Identities=23% Similarity=0.206 Sum_probs=137.5
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
++++++.+|..+. +++++|++++|......+..++.+++|++|+....... +..++.++++|++|++++|. ...
T Consensus 24 ~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~--l~~ 99 (270)
T 2o6q_A 24 SSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK--LQA 99 (270)
T ss_dssp TTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC--CCC
T ss_pred cCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc--CCc
Confidence 4567888887554 68999999994444444446888999999886555433 44437889999999999987 444
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCce
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRK 157 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 157 (202)
..+..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|.+...+...++.+++|++|++++|.+....
T Consensus 100 ~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 100 LPIGVFDQLVNLAELRLDRNQ-----LKSLPPRVFDS-LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp CCTTTTTTCSSCCEEECCSSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCHhHcccccCCCEEECCCCc-----cCeeCHHHhCc-CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 444567888999999998632 01111 3566 889999999999999887777889999999999988775421
Q ss_pred EEEcCCCCCcccEEEeccccCccceeeC-CCccccccEEeeecCC
Q 037964 158 LACCSGGFPCLKFLHLKSMLWLDEWTMG-TKATWKLEHLIINPCA 201 (202)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 201 (202)
+.....+++|+.|++++|. +..++.. ...+++|+.|++.++|
T Consensus 174 -~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 174 -EGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp -TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -hhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCCC
Confidence 2224568899999999987 6666543 3567889999998765
No 8
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.79 E-value=1.7e-19 Score=140.25 Aligned_cols=189 Identities=18% Similarity=0.149 Sum_probs=120.5
Q ss_pred CCCccccccHH-HhccccccEEEeCce-------------------------eeccccccccccCCCcceecccccCch-
Q 037964 2 PLSFIDHTPED-IWKMHKLRHLNFGYI-------------------------KLHAHPGKYCSALENLNFISALHLSSC- 54 (202)
Q Consensus 2 ~~~~~~~lp~~-~~~l~~L~~L~l~~~-------------------------~~~~~~p~~l~~l~~L~~L~~~~~~~~- 54 (202)
.++.++++|.. +.++++|++|++++| +....+|..+..+++|++|+.......
T Consensus 36 ~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~ 115 (306)
T 2z66_A 36 ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 115 (306)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES
T ss_pred CCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccc
Confidence 34555555543 455556666666553 222233444455555555543332221
Q ss_pred -h--HHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhcc-c--ccccCCCCccEEEeeCCC
Q 037964 55 -T--RDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQID-I--AEYQFPQSLTHLSLTNTK 128 (202)
Q Consensus 55 -~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~--~~~~~l~~L~~L~l~~~~ 128 (202)
+ .. +..+++|++|++++|. .....+..+..+++|+.|+++++. +.+. + .+.. +++|+.|++++|+
T Consensus 116 ~~~~~~-~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~~-l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 116 MSEFSV-FLSLRNLIYLDISHTH--TRVAFNGIFNGLSSLEVLKMAGNS-----FQENFLPDIFTE-LRNLTFLDLSQCQ 186 (306)
T ss_dssp STTTTT-TTTCTTCCEEECTTSC--CEECSTTTTTTCTTCCEEECTTCE-----EGGGEECSCCTT-CTTCCEEECTTSC
T ss_pred cccchh-hhhccCCCEEECCCCc--CCccchhhcccCcCCCEEECCCCc-----cccccchhHHhh-CcCCCEEECCCCC
Confidence 1 23 6666666666666665 444455556666777777766532 1221 1 4666 8899999999999
Q ss_pred CCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccc-eeeCCCccc-cccEEeeecCC
Q 037964 129 LKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDE-WTMGTKATW-KLEHLIINPCA 201 (202)
Q Consensus 129 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~-~L~~L~i~~c~ 201 (202)
+...++..+..+++|++|++++|.+.+.. +.....+++|+.|++++|. +.. .+.....+| +|++|++++++
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCC-SGGGTTCTTCCEEECTTSC-CCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccC-hhhccCcccCCEeECCCCC-CcccCHHHHHhhhccCCEEEccCCC
Confidence 98887788899999999999988876532 2245678999999999998 543 344445664 89999998875
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.78 E-value=3.4e-19 Score=143.02 Aligned_cols=95 Identities=15% Similarity=0.208 Sum_probs=47.4
Q ss_pred CCCccccccH-HHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++.+|. ++..+++|++|++++|......|..++.+++|++|+....... +.++++++++|++|++++|. ..
T Consensus 77 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~--l~ 154 (390)
T 3o6n_A 77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN--LE 154 (390)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CC
T ss_pred CCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCc--cC
Confidence 3444555443 4555555555555553323333334555555555554333322 33324556666666666654 33
Q ss_pred HHHHHHhccCCCccEEEeec
Q 037964 79 SVLSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~ 98 (202)
...+..++.+++|+.|++++
T Consensus 155 ~~~~~~~~~l~~L~~L~l~~ 174 (390)
T 3o6n_A 155 RIEDDTFQATTSLQNLQLSS 174 (390)
T ss_dssp BCCTTTTSSCTTCCEEECCS
T ss_pred ccChhhccCCCCCCEEECCC
Confidence 33344556666666666655
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=2.8e-19 Score=151.00 Aligned_cols=193 Identities=16% Similarity=0.197 Sum_probs=97.2
Q ss_pred CCCccccccH-HHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++.+|+ ++..+++|++|++++|......|..++.+++|++|+...+... +..+++++++|++|++++|. ..
T Consensus 83 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~--l~ 160 (597)
T 3oja_B 83 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN--LE 160 (597)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CC
T ss_pred CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCc--CC
Confidence 3445555543 4555666666666653333333334555666666654433322 33324666666666666665 44
Q ss_pred HHHHHHhccCCCccEEEeecCc-c-----hhh-c----hh----------------------------------------
Q 037964 79 SVLSKSLCELRCLDSLKLVNES-N-----MLG-I----LQ---------------------------------------- 107 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~-~-----~~~-~----~~---------------------------------------- 107 (202)
+..+..++.+++|+.|+++++. . .+. + +.
T Consensus 161 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~ 240 (597)
T 3oja_B 161 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQ 240 (597)
T ss_dssp BCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECC
T ss_pred CCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECC
Confidence 4444556666666666665521 0 000 0 00
Q ss_pred c-cc----ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccce
Q 037964 108 I-DI----AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEW 182 (202)
Q Consensus 108 ~-~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 182 (202)
+ .+ ++.. +++|+.|++++|.+.+.++..++++++|+.|++++|.+.+ ++.....+++|+.|++++|. +..+
T Consensus 241 ~n~l~~~~~l~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~Ls~N~-l~~i 316 (597)
T 3oja_B 241 HNNLTDTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNH-LLHV 316 (597)
T ss_dssp SSCCCCCGGGGG-CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE--EECSSSCCTTCCEEECCSSC-CCCC
T ss_pred CCCCCCChhhcc-CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC--CCcccccCCCCcEEECCCCC-CCcc
Confidence 0 00 2333 4555666666665555555555666666666666555543 23333446666666666665 4444
Q ss_pred eeCCCccccccEEeeecC
Q 037964 183 TMGTKATWKLEHLIINPC 200 (202)
Q Consensus 183 ~~~~~~~~~L~~L~i~~c 200 (202)
+.....+++|+.|++++|
T Consensus 317 ~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 317 ERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp GGGHHHHTTCSEEECCSS
T ss_pred CcccccCCCCCEEECCCC
Confidence 433344455555555444
No 11
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.77 E-value=1.2e-18 Score=136.92 Aligned_cols=191 Identities=17% Similarity=0.162 Sum_probs=102.7
Q ss_pred CCCCccccccH-HHhccccccEEEeCceeeccccccccccCCCcceecccccCch-----------------------hH
Q 037964 1 IPLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-----------------------TR 56 (202)
Q Consensus 1 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-----------------------~~ 56 (202)
+.++.++.+|. ++.++++|++|++++|......|..++.+++|++|+....... +.
T Consensus 59 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~ 138 (330)
T 1xku_A 59 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRK 138 (330)
T ss_dssp CCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCH
T ss_pred CCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCH
Confidence 35677777765 5778888888888884445455666777777777764332211 22
Q ss_pred HHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCcc
Q 037964 57 DILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPT 136 (202)
Q Consensus 57 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 136 (202)
++++++++|+.|++++|.....+..+..+..+++|+.|+++++.- . .+.... .++|+.|++++|.+...++..
T Consensus 139 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l-----~-~l~~~~-~~~L~~L~l~~n~l~~~~~~~ 211 (330)
T 1xku_A 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-----T-TIPQGL-PPSLTELHLDGNKITKVDAAS 211 (330)
T ss_dssp HHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-----C-SCCSSC-CTTCSEEECTTSCCCEECTGG
T ss_pred hHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc-----c-cCCccc-cccCCEEECCCCcCCccCHHH
Confidence 225666666666666665222234445566666666666654210 0 001111 345555555555555544555
Q ss_pred ccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecC
Q 037964 137 LEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200 (202)
Q Consensus 137 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c 200 (202)
+.++++|++|++++|.+.+.. +.....+++|+.|++++|. +..++.....+++|++|++++|
T Consensus 212 ~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N 273 (330)
T 1xku_A 212 LKGLNNLAKLGLSFNSISAVD-NGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNN 273 (330)
T ss_dssp GTTCTTCCEEECCSSCCCEEC-TTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSS
T ss_pred hcCCCCCCEEECCCCcCceeC-hhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCC
Confidence 555666666666555543211 1122335556666666554 4444444444555555555544
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.77 E-value=4.2e-19 Score=153.92 Aligned_cols=190 Identities=19% Similarity=0.167 Sum_probs=123.4
Q ss_pred CCCccc-cccHH-HhccccccEEEeCceeeccccccccccCC-CcceecccccCc-------------------------
Q 037964 2 PLSFID-HTPED-IWKMHKLRHLNFGYIKLHAHPGKYCSALE-NLNFISALHLSS------------------------- 53 (202)
Q Consensus 2 ~~~~~~-~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~-~L~~L~~~~~~~------------------------- 53 (202)
.++.+. .+|.. +.++++|++|++++|...+.+|..+..++ +|++|+......
T Consensus 326 ~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~ 405 (768)
T 3rgz_A 326 SSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG 405 (768)
T ss_dssp CSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred CCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc
Confidence 445554 67765 77777777777777555556666666555 555555332211
Q ss_pred ---h-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCC
Q 037964 54 ---C-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNT 127 (202)
Q Consensus 54 ---~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~ 127 (202)
. +.. ++++++|+.|++++|. ..+.+|..++.+++|+.|+++++. +.+.+ .+.. +++|+.|++++|
T Consensus 406 l~~~~p~~-l~~l~~L~~L~Ls~N~--l~~~~p~~l~~l~~L~~L~L~~n~-----l~~~~p~~~~~-l~~L~~L~L~~N 476 (768)
T 3rgz_A 406 FTGKIPPT-LSNCSELVSLHLSFNY--LSGTIPSSLGSLSKLRDLKLWLNM-----LEGEIPQELMY-VKTLETLILDFN 476 (768)
T ss_dssp EEEECCGG-GGGCTTCCEEECCSSE--EESCCCGGGGGCTTCCEEECCSSC-----CCSCCCGGGGG-CTTCCEEECCSS
T ss_pred cccccCHH-HhcCCCCCEEECcCCc--ccCcccHHHhcCCCCCEEECCCCc-----ccCcCCHHHcC-CCCceEEEecCC
Confidence 1 333 5555555555555554 444555555555666666555432 12222 4556 788888888888
Q ss_pred CCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 128 KLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 128 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
++.+..+..++++++|++|++++|.+.+.. +...+.+++|+.|++++|.....++...+.+++|+.|++++|+
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEI-PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcC-ChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 888777778888888888888877776543 5556678888888888888444666666778888888888763
No 13
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.77 E-value=8.3e-19 Score=144.17 Aligned_cols=169 Identities=21% Similarity=0.184 Sum_probs=104.1
Q ss_pred CCCCcccccc-HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCch
Q 037964 1 IPLSFIDHTP-EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 1 ~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
+.+++++.++ .++.++++|++|++++|......|..++++++|++|+....... +..+++++++|++|++++|. .
T Consensus 39 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i 116 (477)
T 2id5_A 39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK--I 116 (477)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC--C
T ss_pred CCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc--c
Confidence 3566677764 46777888888888874445555666777778887775544333 33336777888888887776 5
Q ss_pred HHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCC
Q 037964 78 QSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
....+..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|++...+...+.++++|+.|++++|.+.+
T Consensus 117 ~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 117 VILLDYMFQDLYNLKSLEVGDND-----LVYISHRAFSG-LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CEECTTTTTTCTTCCEEEECCTT-----CCEECTTSSTT-CTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred ccCChhHccccccCCEEECCCCc-----cceeChhhccC-CCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 55556667777788888776532 01000 3455 6677777777777776665566677777777776655532
Q ss_pred ceEEEcCCCCCcccEEEeccccC
Q 037964 156 RKLACCSGGFPCLKFLHLKSMLW 178 (202)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~~~~ 178 (202)
.. +.....+++|+.|++++|..
T Consensus 191 ~~-~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 191 IR-DYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp EC-TTCSCSCTTCCEEEEECCTT
T ss_pred eC-hhhcccCcccceeeCCCCcc
Confidence 11 11233455555555555443
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.77 E-value=6.3e-19 Score=148.71 Aligned_cols=188 Identities=15% Similarity=0.125 Sum_probs=153.0
Q ss_pred CCCccccc---cHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---h-HHHcCcCCccceeeEEeec
Q 037964 2 PLSFIDHT---PEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---T-RDILGRLPNLQSLKIFEDL 74 (202)
Q Consensus 2 ~~~~~~~l---p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~-~~~l~~l~~L~~L~l~~~~ 74 (202)
.++.++.+ |..+..+++|++|++++ |....+|..++.+++|++|+....... + .. ++++++|+.|++++|.
T Consensus 358 s~n~l~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~ 435 (606)
T 3vq2_A 358 SRNALSFSGCCSYSDLGTNSLRHLDLSF-NGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSA-FLSLEKLLYLDISYTN 435 (606)
T ss_dssp CSSCEEEEEECCHHHHCCSCCCEEECCS-CSEEEECCCCTTCTTCCEEECTTSEEESTTTTTT-TTTCTTCCEEECTTSC
T ss_pred cCCccCCCcchhhhhccCCcccEeECCC-CccccchhhccCCCCCCeeECCCCccCCccChhh-hhccccCCEEECcCCC
Confidence 45666665 78899999999999999 555557777889999999986555433 3 35 8899999999999998
Q ss_pred CchHHHHHHHhccCCCccEEEeecCcchhhchhcc-c--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccC
Q 037964 75 SHYQSVLSKSLCELRCLDSLKLVNESNMLGILQID-I--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQN 151 (202)
Q Consensus 75 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 151 (202)
..+..|..++.+++|+.|+++++. +.+. + .+.. +++|+.|++++|++.+.++..++++++|++|++++|
T Consensus 436 --l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 507 (606)
T 3vq2_A 436 --TKIDFDGIFLGLTSLNTLKMAGNS-----FKDNTLSNVFAN-TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN 507 (606)
T ss_dssp --CEECCTTTTTTCTTCCEEECTTCE-----EGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred --CCccchhhhcCCCCCCEEECCCCc-----CCCcchHHhhcc-CCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence 667778889999999999998753 2222 2 4677 899999999999999888888999999999999988
Q ss_pred ccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccc-cccEEeeecCC
Q 037964 152 SFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATW-KLEHLIINPCA 201 (202)
Q Consensus 152 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~i~~c~ 201 (202)
.+.+.. +.....+++|+.|++++|. +..++.....++ +|++|+++++|
T Consensus 508 ~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 508 NLLFLD-SSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp CCSCEE-GGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred cCCCcC-HHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 886532 4566789999999999998 888887777787 59999999875
No 15
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.76 E-value=1.3e-18 Score=141.79 Aligned_cols=196 Identities=15% Similarity=0.126 Sum_probs=124.6
Q ss_pred CCCCcccccc-HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCch
Q 037964 1 IPLSFIDHTP-EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 1 ~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
+.++.++.++ .++.++++|++|++++|......+..+.++++|++|+..+.... +.+++..+++|++|++++|. .
T Consensus 71 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~--i 148 (440)
T 3zyj_A 71 LHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP--I 148 (440)
T ss_dssp CCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC--C
T ss_pred ccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc--c
Confidence 3567777775 56788888888888884444444456777888888875554433 33337788888888888776 3
Q ss_pred HHHHHHHhccCCCccEEEeecCcch-------hh-c-------hh-ccc----ccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 78 QSVLSKSLCELRCLDSLKLVNESNM-------LG-I-------LQ-IDI----AEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~-------~~-~-------~~-~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
....+..+.++++|+.|+++++... +. + ++ +.+ .+.. +++|+.|++++|++...++..+
T Consensus 149 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~ 227 (440)
T 3zyj_A 149 ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTP-LIKLDELDLSGNHLSAIRPGSF 227 (440)
T ss_dssp CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTT-CSSCCEEECTTSCCCEECTTTT
T ss_pred cccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCC-CcccCEEECCCCccCccChhhh
Confidence 3333446667777777777652110 00 0 01 111 2344 5677777777777776666677
Q ss_pred cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeC-CCccccccEEeeecCC
Q 037964 138 EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMG-TKATWKLEHLIINPCA 201 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 201 (202)
.++++|+.|++++|.+.+.. +.....+++|+.|++++|. +..++.. ...+++|+.|+++++|
T Consensus 228 ~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 228 QGLMHLQKLWMIQSQIQVIE-RNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTCTTCCEEECTTCCCCEEC-TTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ccCccCCEEECCCCceeEEC-hhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 77777777777766654321 2234567888888888887 6655543 2557888888888765
No 16
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.76 E-value=1.2e-18 Score=134.77 Aligned_cols=186 Identities=19% Similarity=0.101 Sum_probs=143.5
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
.++.++.+|..+. +++++|++++|......+..+..+++|+.|+....... ... .+.+++|+.|++++|. ...
T Consensus 18 ~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~---l~~ 91 (290)
T 1p9a_G 18 DKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQ---LQS 91 (290)
T ss_dssp TTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSC---CSS
T ss_pred CCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-CCCCCcCCEEECCCCc---CCc
Confidence 4677888887664 68999999995555555667888999999886665544 444 5788999999999996 446
Q ss_pred HHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceE
Q 037964 81 LSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKL 158 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 158 (202)
+|..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|++...++..+..+++|+.|++++|.+..-.
T Consensus 92 l~~~~~~l~~L~~L~l~~N~-----l~~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~- 164 (290)
T 1p9a_G 92 LPLLGQTLPALTVLDVSFNR-----LTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP- 164 (290)
T ss_dssp CCCCTTTCTTCCEEECCSSC-----CCCCCSSTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC-
T ss_pred CchhhccCCCCCEEECCCCc-----CcccCHHHHcC-CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC-
Confidence 77788889999999998642 11110 3566 889999999999999888888889999999999988876311
Q ss_pred EEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 159 ACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
+.....+++|+.|++++|. +..++......+.|+.+++.++|
T Consensus 165 ~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred HHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence 1223568999999999998 77777777777889999998765
No 17
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=3.2e-18 Score=131.81 Aligned_cols=187 Identities=18% Similarity=0.110 Sum_probs=143.6
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++.+|.++ .++|++|++++|......+..++.+++|++|+....... +.. ++++++|++|++++|. ..
T Consensus 19 ~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~--~l 93 (285)
T 1ozn_A 19 PQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAA-FTGLALLEQLDLSDNA--QL 93 (285)
T ss_dssp CSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSCT--TC
T ss_pred CcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhh-cCCccCCCEEeCCCCC--Cc
Confidence 456788888754 579999999995445444456899999999986655433 555 9999999999999984 23
Q ss_pred HHH-HHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCC
Q 037964 79 SVL-SKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 79 ~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
..+ +..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|.+...+...++++++|++|++++|.+..
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCG-----LQELGPGLFRG-LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred cccCHHHhcCCcCCCEEECCCCc-----CCEECHhHhhC-CcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence 334 6788999999999998642 11111 3666 8999999999999998888889999999999999887753
Q ss_pred ceEEEcCCCCCcccEEEeccccCccce-eeCCCccccccEEeeecCC
Q 037964 156 RKLACCSGGFPCLKFLHLKSMLWLDEW-TMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~c~ 201 (202)
.. +.....+++|+.|++++|. +..+ +.....+++|++|++++|.
T Consensus 168 ~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 168 VP-ERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp EC-TTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred cC-HHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCc
Confidence 11 1235678999999999998 6555 4445678999999999874
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.75 E-value=2.1e-18 Score=141.10 Aligned_cols=196 Identities=16% Similarity=0.134 Sum_probs=130.6
Q ss_pred CCCCccccc-cHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCch
Q 037964 1 IPLSFIDHT-PEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 1 ~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
++++.++.+ |.++.++++|++|++++|......+..+..+++|++|+..+.... +.++++.+++|++|++++|. .
T Consensus 82 L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~--l 159 (452)
T 3zyi_A 82 LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP--I 159 (452)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC--C
T ss_pred CcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC--c
Confidence 456778887 456889999999999995445555566888888888886555433 43338888899999998886 4
Q ss_pred HHHHHHHhccCCCccEEEeecCcch-------hh----c----hh-ccc----ccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 78 QSVLSKSLCELRCLDSLKLVNESNM-------LG----I----LQ-IDI----AEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~-------~~----~----~~-~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
....+..+.++++|+.|+++++... +. + ++ +.+ .+.. +++|+.|++++|.+...++..+
T Consensus 160 ~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~ 238 (452)
T 3zyi_A 160 ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTP-LVGLEELEMSGNHFPEIRPGSF 238 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTT-CTTCCEEECTTSCCSEECGGGG
T ss_pred ceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccc-cccccEEECcCCcCcccCcccc
Confidence 4433446777788888887652110 00 0 01 111 2344 5677777777777777666777
Q ss_pred cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeC-CCccccccEEeeecCC
Q 037964 138 EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMG-TKATWKLEHLIINPCA 201 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 201 (202)
.++++|+.|++++|.+.+.. +.....+++|+.|++++|. +..++.. ...+++|++|++.++|
T Consensus 239 ~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 239 HGLSSLKKLWVMNSQVSLIE-RNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred cCccCCCEEEeCCCcCceEC-HHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 77778888888766664321 2234567888888888886 6655443 2557888888888765
No 19
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.75 E-value=3.4e-18 Score=137.18 Aligned_cols=95 Identities=12% Similarity=0.121 Sum_probs=73.8
Q ss_pred CCCccccccHH-HhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPED-IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++.+|.. +.++++|++|++++|......+..++.+++|++|+....... ++++++++++|++|++++|. ..
T Consensus 53 ~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~ 130 (390)
T 3o6n_A 53 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND--LS 130 (390)
T ss_dssp ESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CC
T ss_pred cCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc--cC
Confidence 45678889876 689999999999994444444557899999999986655433 33338999999999999996 33
Q ss_pred HHHHHH-hccCCCccEEEeecC
Q 037964 79 SVLSKS-LCELRCLDSLKLVNE 99 (202)
Q Consensus 79 ~~~~~~-l~~l~~L~~L~l~~~ 99 (202)
.+|.. ++++++|+.|+++++
T Consensus 131 -~l~~~~~~~l~~L~~L~L~~n 151 (390)
T 3o6n_A 131 -SLPRGIFHNTPKLTTLSMSNN 151 (390)
T ss_dssp -CCCTTTTTTCTTCCEEECCSS
T ss_pred -cCCHHHhcCCCCCcEEECCCC
Confidence 45544 689999999999874
No 20
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.75 E-value=4.7e-18 Score=132.51 Aligned_cols=179 Identities=17% Similarity=0.133 Sum_probs=130.8
Q ss_pred CCCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHH
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+.++.++.+| ++..+++|++|++++ +....++. ++.+++|++|+....... ++. ++++++|++|++++|. ..+
T Consensus 48 l~~~~i~~l~-~~~~l~~L~~L~L~~-n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~--l~~ 121 (308)
T 1h6u_A 48 AFGTGVTTIE-GVQYLNNLIGLELKD-NQITDLAP-LKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQ--ITD 121 (308)
T ss_dssp CTTSCCCCCT-TGGGCTTCCEEECCS-SCCCCCGG-GTTCCSCCEEECCSCCCSCCGG-GTTCTTCCEEECTTSC--CCC
T ss_pred eeCCCccCch-hhhccCCCCEEEccC-CcCCCChh-HccCCCCCEEEccCCcCCCchh-hcCCCCCCEEECCCCC--CCC
Confidence 3567778887 588889999999998 45445554 788888888876655544 556 8888999999998886 222
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceE
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKL 158 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 158 (202)
++ .+..+++|+.|+++++. +. .+ .+.. +++|+.|++++|.+...+. +..+++|+.|++++|.+.+..
T Consensus 122 -~~-~l~~l~~L~~L~l~~n~-----l~-~~~~l~~-l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~- 189 (308)
T 1h6u_A 122 -VT-PLAGLSNLQVLYLDLNQ-----IT-NISPLAG-LTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDIS- 189 (308)
T ss_dssp -CG-GGTTCTTCCEEECCSSC-----CC-CCGGGGG-CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-
T ss_pred -ch-hhcCCCCCCEEECCCCc-----cC-cCccccC-CCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcCh-
Confidence 33 37888899999887632 01 11 3556 7889999999998887533 788899999999888775422
Q ss_pred EEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 159 ACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
....+++|+.|++++|. +..++. ...+++|+.|++++++
T Consensus 190 --~l~~l~~L~~L~L~~N~-l~~~~~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 190 --PLASLPNLIEVHLKNNQ-ISDVSP-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp --GGGGCTTCCEEECTTSC-CCBCGG-GTTCTTCCEEEEEEEE
T ss_pred --hhcCCCCCCEEEccCCc-cCcccc-ccCCCCCCEEEccCCe
Confidence 25668889999999887 655542 4668889999888763
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.75 E-value=3.4e-18 Score=144.36 Aligned_cols=189 Identities=14% Similarity=0.081 Sum_probs=132.1
Q ss_pred CCCccccccHH-HhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPED-IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++.+|.. +.++++|++|++++|......|..++.+++|+.|+....... ++.+++++++|++|++++|. ..
T Consensus 59 ~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~ 136 (597)
T 3oja_B 59 KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND--LS 136 (597)
T ss_dssp SSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CC
T ss_pred eCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC--CC
Confidence 46778889876 688999999999995555555567999999999986665433 43338999999999999997 44
Q ss_pred HHHHH-HhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCC----------------------
Q 037964 79 SVLSK-SLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDP---------------------- 133 (202)
Q Consensus 79 ~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~---------------------- 133 (202)
.+|. .++.+++|+.|+++++.- .+.. .+.. +++|+.|++++|.+...+
T Consensus 137 -~l~~~~~~~l~~L~~L~Ls~N~l-----~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~ 209 (597)
T 3oja_B 137 -SLPRGIFHNTPKLTTLSMSNNNL-----ERIEDDTFQA-TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAI 209 (597)
T ss_dssp -CCCTTTTTTCTTCCEEECCSSCC-----CBCCTTTTTT-CTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEEC
T ss_pred -CCCHHHhccCCCCCEEEeeCCcC-----CCCChhhhhc-CCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccC
Confidence 4444 468999999999987420 0000 1222 333333333333322211
Q ss_pred -------------------------------------CccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccc
Q 037964 134 -------------------------------------MPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSM 176 (202)
Q Consensus 134 -------------------------------------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 176 (202)
+..++.+++|+.|++++|.+.+.. +...+.+++|+.|++++|
T Consensus 210 ~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N 288 (597)
T 3oja_B 210 PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIM-YHPFVKMQRLERLYISNN 288 (597)
T ss_dssp CTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEE-SGGGTTCSSCCEEECTTS
T ss_pred CchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCC-HHHhcCccCCCEEECCCC
Confidence 245667788888888877765432 445567889999999988
Q ss_pred cCccceeeCCCccccccEEeeecCC
Q 037964 177 LWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 177 ~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
. +..++...+.+|+|+.|++++|.
T Consensus 289 ~-l~~l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 289 R-LVALNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp C-CCEEECSSSCCTTCCEEECCSSC
T ss_pred C-CCCCCcccccCCCCcEEECCCCC
Confidence 7 77777777778999999998874
No 22
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.74 E-value=1.8e-18 Score=132.60 Aligned_cols=83 Identities=20% Similarity=0.161 Sum_probs=46.3
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcc----eEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCC-Cccc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLL----VLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGT-KATW 190 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~ 190 (202)
+++|+.|++++|++...+...+..+++|+ +|++++|.+.+ ++.......+|+.|++++|. +..++... ..++
T Consensus 148 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~--~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~ 224 (276)
T 2z62_A 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLT 224 (276)
T ss_dssp CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCE--ECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCC
T ss_pred CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccc--cCccccCCCcccEEECCCCc-eeecCHhHhcccc
Confidence 44555555555554444333333333333 44444444321 11112234479999999888 76665543 5688
Q ss_pred cccEEeeecCC
Q 037964 191 KLEHLIINPCA 201 (202)
Q Consensus 191 ~L~~L~i~~c~ 201 (202)
+|++|++++++
T Consensus 225 ~L~~L~l~~N~ 235 (276)
T 2z62_A 225 SLQKIWLHTNP 235 (276)
T ss_dssp SCCEEECCSSC
T ss_pred cccEEEccCCc
Confidence 99999998654
No 23
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.74 E-value=4.3e-18 Score=139.19 Aligned_cols=189 Identities=20% Similarity=0.173 Sum_probs=130.9
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+..++++|..+. +++++|++++|......|..++++++|+.|+....... +.. +.++++|++|++++|. ...
T Consensus 63 ~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~n~--l~~ 137 (452)
T 3zyi_A 63 RRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA-FNGLASLNTLELFDNW--LTV 137 (452)
T ss_dssp SSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSC--CSB
T ss_pred CCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh-ccCcccCCEEECCCCc--CCc
Confidence 457788887554 69999999996556666777999999999987665544 455 9999999999999997 454
Q ss_pred HHHHHhccCCCccEEEeecCc------chhh----c----hhc--cc------ccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 80 VLSKSLCELRCLDSLKLVNES------NMLG----I----LQI--DI------AEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~------~~~~----~----~~~--~~------~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
..+..+..+++|+.|+++++. ..+. + +.+ .+ .+.. +++|+.|++++|++... ..+
T Consensus 138 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L~L~~n~l~~~--~~~ 214 (452)
T 3zyi_A 138 IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMCNIKDM--PNL 214 (452)
T ss_dssp CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CTTCCEEECTTSCCSSC--CCC
T ss_pred cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC-CCCCCEEECCCCccccc--ccc
Confidence 445568899999999998742 0110 0 111 11 2444 66777777777777654 346
Q ss_pred cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceee-CCCccccccEEeeecCC
Q 037964 138 EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTM-GTKATWKLEHLIINPCA 201 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~ 201 (202)
..+++|+.|++++|.+.+.. +.....+++|+.|++++|. +..+.. ....+++|++|+++++.
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 277 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNN 277 (452)
T ss_dssp TTCTTCCEEECTTSCCSEEC-GGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred cccccccEEECcCCcCcccC-cccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCCc
Confidence 67777777777776665321 3345567788888888877 554432 33557888888888763
No 24
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=1.8e-18 Score=137.09 Aligned_cols=190 Identities=14% Similarity=0.119 Sum_probs=111.1
Q ss_pred CCCccccccH-HHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++.+|. ++.++++|++|++++|......|..++++++|++|+....... +.++++++++|++|++++|. .
T Consensus 60 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~---l 136 (353)
T 2z80_A 60 SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP---Y 136 (353)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC---C
T ss_pred CCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC---C
Confidence 4566677665 5777777777777774334444455777777777765444333 33336777777777777775 2
Q ss_pred HHHHH--HhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCCccccC--------------
Q 037964 79 SVLSK--SLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPMPTLEK-------------- 139 (202)
Q Consensus 79 ~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-------------- 139 (202)
..++. .+..+++|+.|+++++... +.+ .+.. +++|+.|++++|.+....+..+++
T Consensus 137 ~~l~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 137 KTLGETSLFSHLTKLQILRVGNMDTF-----TKIQRKDFAG-LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESSSC-----CEECTTTTTT-CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred cccCchhhhccCCCCcEEECCCCccc-----cccCHHHccC-CCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 23443 5667777777777653200 000 2333 444555555555444433333333
Q ss_pred ----------CCCcceEEeccCccCCceE------------------------------EEcCCCCCcccEEEeccccCc
Q 037964 140 ----------LPHLLVLKLKQNSFSRRKL------------------------------ACCSGGFPCLKFLHLKSMLWL 179 (202)
Q Consensus 140 ----------l~~L~~L~l~~~~~~~~~~------------------------------~~~~~~~~~L~~L~l~~~~~l 179 (202)
+++|++|++++|.+.+... +.....+++|+.|++++|. +
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l 289 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-L 289 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-C
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-C
Confidence 5555555555555433110 0011346788888888887 6
Q ss_pred cceeeCC-CccccccEEeeecCC
Q 037964 180 DEWTMGT-KATWKLEHLIINPCA 201 (202)
Q Consensus 180 ~~~~~~~-~~~~~L~~L~i~~c~ 201 (202)
..++... +.+++|++|++++++
T Consensus 290 ~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 290 KSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHHHHhcCCCCCEEEeeCCC
Confidence 6666654 668889999998875
No 25
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=2.6e-18 Score=146.10 Aligned_cols=163 Identities=15% Similarity=0.173 Sum_probs=111.6
Q ss_pred CCccccccHHHhccccccEEEeCceeeccc-----------------cccccc--cCCCcceecccccC--ch-hHHHcC
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAH-----------------PGKYCS--ALENLNFISALHLS--SC-TRDILG 60 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-----------------~p~~l~--~l~~L~~L~~~~~~--~~-~~~~l~ 60 (202)
.++++.||.+++++++|++|++++|...+. +|..++ ++++|++|+..... +. |.. ++
T Consensus 192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~ 270 (636)
T 4eco_A 192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LK 270 (636)
T ss_dssp SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TT
T ss_pred cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHH-Hh
Confidence 457777999999999999999999555554 899998 99999999876654 33 767 99
Q ss_pred cCCccceeeEEeecCchHH-HHHHHhccC------CCccEEEeecCcchhhchhccc----ccccCCCCccEEEeeCCCC
Q 037964 61 RLPNLQSLKIFEDLSHYQS-VLSKSLCEL------RCLDSLKLVNESNMLGILQIDI----AEYQFPQSLTHLSLTNTKL 129 (202)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~ 129 (202)
++++|++|++++|+. ..+ .+|..++++ ++|+.|+++++. +. .+ .+.. +++|+.|++++|.+
T Consensus 271 ~l~~L~~L~Ls~n~~-l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-----l~-~ip~~~~l~~-l~~L~~L~L~~N~l 342 (636)
T 4eco_A 271 ALPEMQLINVACNRG-ISGEQLKDDWQALADAPVGEKIQIIYIGYNN-----LK-TFPVETSLQK-MKKLGMLECLYNQL 342 (636)
T ss_dssp TCSSCCEEECTTCTT-SCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-----CS-SCCCHHHHTT-CTTCCEEECCSCCC
T ss_pred cCCCCCEEECcCCCC-CccccchHHHHhhhccccCCCCCEEECCCCc-----CC-ccCchhhhcc-CCCCCEEeCcCCcC
Confidence 999999999999841 233 688888876 899999998742 01 11 1344 66677777777766
Q ss_pred CCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCc-ccEEEecccc
Q 037964 130 KDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPC-LKFLHLKSML 177 (202)
Q Consensus 130 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~ 177 (202)
.+..+ .++.+++|++|++++|.+. .++.....+++ |+.|++++|.
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~N~l~--~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAYNQIT--EIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp EEECC-CCEEEEEESEEECCSSEEE--ECCTTSEEECTTCCEEECCSSC
T ss_pred ccchh-hhCCCCCCCEEECCCCccc--cccHhhhhhcccCcEEEccCCc
Confidence 63323 5556666666666655543 22222333444 5555555554
No 26
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=6.2e-18 Score=131.97 Aligned_cols=172 Identities=19% Similarity=0.186 Sum_probs=105.1
Q ss_pred hccccccEEEeCceeeccccccccccC-----CCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHH--HHH
Q 037964 14 WKMHKLRHLNFGYIKLHAHPGKYCSAL-----ENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSV--LSK 83 (202)
Q Consensus 14 ~~l~~L~~L~l~~~~~~~~~p~~l~~l-----~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~--~~~ 83 (202)
..+++|++|++++ |.....|..++.+ ++|++|+..+.... +.. ++++++|++|++++|+ ..+. ++.
T Consensus 118 ~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~--l~~~~~~~~ 193 (312)
T 1wwl_A 118 ATGPDLNILNLRN-VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQ-VRVFPALSTLDLSDNP--ELGERGLIS 193 (312)
T ss_dssp CCSCCCSEEEEES-CBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTT-CCCCSSCCEEECCSCT--TCHHHHHHH
T ss_pred hcCCCccEEEccC-CCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHH-hccCCCCCEEECCCCC--cCcchHHHH
Confidence 4455555555555 2222224444444 45555554333322 234 6677777777777765 3332 444
Q ss_pred Hh--ccCCCccEEEeecCcchhhchhc--cc---ccccCCCCccEEEeeCCCCCCCC-CccccCCCCcceEEeccCccCC
Q 037964 84 SL--CELRCLDSLKLVNESNMLGILQI--DI---AEYQFPQSLTHLSLTNTKLKDDP-MPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 84 ~l--~~l~~L~~L~l~~~~~~~~~~~~--~~---~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
.+ +.+++|+.|+++++. +.+ .+ .+.. +++|+.|++++|++.+.+ ...+..+++|++|++++|.+..
T Consensus 194 ~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ 267 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAG-----METPSGVCSALAAA-RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQ 267 (312)
T ss_dssp HSCTTSCTTCCEEECTTSC-----CCCHHHHHHHHHHT-TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSS
T ss_pred HHHhccCCCCCEEECCCCc-----CcchHHHHHHHHhc-CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccCh
Confidence 54 667777777776532 110 11 2234 688899999988888755 3455677889999998887752
Q ss_pred ceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 156 RKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
++... +++|+.|++++|. ++.++. ...+++|++|++++++
T Consensus 268 --ip~~~--~~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 268 --VPKGL--PAKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp --CCSSC--CSEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred --hhhhc--cCCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 23222 3789999999887 766654 5678899999988764
No 27
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=6.2e-18 Score=137.81 Aligned_cols=188 Identities=19% Similarity=0.180 Sum_probs=127.8
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+..++++|..+. +++++|++++|......+..++++++|+.|+....... +.. +.++++|++|++++|. ...
T Consensus 52 ~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~-~~~l~~L~~L~L~~n~--l~~ 126 (440)
T 3zyj_A 52 RKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA-FNGLANLNTLELFDNR--LTT 126 (440)
T ss_dssp SCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG-GTTCSSCCEEECCSSC--CSS
T ss_pred CCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh-ccCCccCCEEECCCCc--CCe
Confidence 467888888665 78999999995555555577999999999986665544 455 9999999999999997 444
Q ss_pred HHHHHhccCCCccEEEeecCc------chhh----c----hhc--cc------ccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 80 VLSKSLCELRCLDSLKLVNES------NMLG----I----LQI--DI------AEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~------~~~~----~----~~~--~~------~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
..+..+..+++|+.|+++++. ..+. + +.+ .+ .+.. +++|+.|++++|++...+ .+
T Consensus 127 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L~L~~n~l~~~~--~~ 203 (440)
T 3zyj_A 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-LSNLRYLNLAMCNLREIP--NL 203 (440)
T ss_dssp CCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CSSCCEEECTTSCCSSCC--CC
T ss_pred eCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc-ccccCeecCCCCcCcccc--cc
Confidence 444578999999999998742 0110 0 111 11 2444 666777777777666542 45
Q ss_pred cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceee-CCCccccccEEeeecC
Q 037964 138 EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTM-GTKATWKLEHLIINPC 200 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c 200 (202)
..+++|+.|++++|.+.+.. +.....+++|+.|++++|. +..+.. ....+++|++|+++++
T Consensus 204 ~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N 265 (440)
T 3zyj_A 204 TPLIKLDELDLSGNHLSAIR-PGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN 265 (440)
T ss_dssp TTCSSCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS
T ss_pred CCCcccCEEECCCCccCccC-hhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC
Confidence 66777777777766654311 2334567778888888776 554433 2345788888888776
No 28
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.73 E-value=2.2e-18 Score=134.53 Aligned_cols=181 Identities=19% Similarity=0.144 Sum_probs=136.3
Q ss_pred ccHHHh-------ccccccEEEeCceeecccccccc--ccCCCcceecccccCch--hHHHcCcC-----CccceeeEEe
Q 037964 9 TPEDIW-------KMHKLRHLNFGYIKLHAHPGKYC--SALENLNFISALHLSSC--TRDILGRL-----PNLQSLKIFE 72 (202)
Q Consensus 9 lp~~~~-------~l~~L~~L~l~~~~~~~~~p~~l--~~l~~L~~L~~~~~~~~--~~~~l~~l-----~~L~~L~l~~ 72 (202)
+|..+. ++++|++|++++|......|..+ +.+++|++|+..+.... +.. ++.+ ++|++|++++
T Consensus 80 ~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~~~~~~L~~L~L~~ 158 (312)
T 1wwl_A 80 IPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAW-LAELQQWLKPGLKVLSIAQ 158 (312)
T ss_dssp CBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSH-HHHHHTTCCTTCCEEEEES
T ss_pred cCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHH-HHHHHHhhcCCCcEEEeeC
Confidence 566665 79999999999966677888876 88999999986665433 434 5555 8999999999
Q ss_pred ecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc------ccccCCCCccEEEeeCCCCCCCC---CccccCCCCc
Q 037964 73 DLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI------AEYQFPQSLTHLSLTNTKLKDDP---MPTLEKLPHL 143 (202)
Q Consensus 73 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~---~~~l~~l~~L 143 (202)
|. ..+..+..++.+++|+.|+++++. +.+.+ .+.. +++|+.|++++|++...+ ...+.++++|
T Consensus 159 N~--l~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L 230 (312)
T 1wwl_A 159 AH--SLNFSCEQVRVFPALSTLDLSDNP-----ELGERGLISALCPLK-FPTLQVLALRNAGMETPSGVCSALAAARVQL 230 (312)
T ss_dssp CS--CCCCCTTTCCCCSSCCEEECCSCT-----TCHHHHHHHHSCTTS-CTTCCEEECTTSCCCCHHHHHHHHHHTTCCC
T ss_pred CC--CccchHHHhccCCCCCEEECCCCC-----cCcchHHHHHHHhcc-CCCCCEEECCCCcCcchHHHHHHHHhcCCCC
Confidence 97 666666889999999999998753 11111 2367 899999999999988432 2344578999
Q ss_pred ceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 144 LVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
++|++++|.+.+.........+++|+.|++++|. ++.++.... ++|++|+++++.
T Consensus 231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSSC
T ss_pred CEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCCC
Confidence 9999999988764311233457999999999998 776655433 899999999874
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=5.6e-18 Score=138.27 Aligned_cols=88 Identities=24% Similarity=0.201 Sum_probs=61.7
Q ss_pred ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCC-Ccc
Q 037964 111 AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGT-KAT 189 (202)
Q Consensus 111 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~ 189 (202)
.+.. +++|+.|++++|.+...++..++++++|++|++++|.+.+.. +.....+++|++|++++|. +..++... ..+
T Consensus 318 ~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 394 (455)
T 3v47_A 318 AFWG-LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG-DQSFLGLPNLKELALDTNQ-LKSVPDGIFDRL 394 (455)
T ss_dssp TTTT-CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTC
T ss_pred HhcC-cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC-hhhccccccccEEECCCCc-cccCCHhHhccC
Confidence 3455 677888888888777766677777888888888777664321 3345567888888888877 66555433 567
Q ss_pred ccccEEeeecCC
Q 037964 190 WKLEHLIINPCA 201 (202)
Q Consensus 190 ~~L~~L~i~~c~ 201 (202)
++|++|++++++
T Consensus 395 ~~L~~L~l~~N~ 406 (455)
T 3v47_A 395 TSLQKIWLHTNP 406 (455)
T ss_dssp TTCCEEECCSSC
T ss_pred CcccEEEccCCC
Confidence 888888888764
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.73 E-value=3.9e-18 Score=134.11 Aligned_cols=93 Identities=17% Similarity=0.165 Sum_probs=56.4
Q ss_pred CCCCccccccH-HHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCch
Q 037964 1 IPLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 1 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
+.++.++.+|+ ++.++++|++|++++|......|..++.+++|++|+....... +.. +. ++|++|++++|. .
T Consensus 61 l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~-~~--~~L~~L~l~~n~--i 135 (332)
T 2ft3_A 61 LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPN-LP--SSLVELRIHDNR--I 135 (332)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSS-CC--TTCCEEECCSSC--C
T ss_pred CCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcc-cc--ccCCEEECCCCc--c
Confidence 35677777754 6888888888888884445555666778888888775443322 333 22 566666666664 3
Q ss_pred HHHHHHHhccCCCccEEEeec
Q 037964 78 QSVLSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~ 98 (202)
....+..++.+++|+.|++++
T Consensus 136 ~~~~~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 136 RKVPKGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp CCCCSGGGSSCSSCCEEECCS
T ss_pred CccCHhHhCCCccCCEEECCC
Confidence 322233455666666666654
No 31
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.73 E-value=5.6e-18 Score=142.93 Aligned_cols=193 Identities=19% Similarity=0.165 Sum_probs=108.6
Q ss_pred CCCccccccHH-HhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCch
Q 037964 2 PLSFIDHTPED-IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 2 ~~~~~~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
.++.++.+|.. +.++++|++|++++ +....+|.+++.+++|++|+....... +.. ++++++|++|++++|. .
T Consensus 262 ~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~--~ 337 (606)
T 3t6q_A 262 QKHYFFNISSNTFHCFSGLQELDLTA-THLSELPSGLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNT--K 337 (606)
T ss_dssp TTCCCSSCCTTTTTTCTTCSEEECTT-SCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCS--S
T ss_pred ecCccCccCHHHhccccCCCEEeccC-CccCCCChhhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCC--c
Confidence 45566666554 77777888888887 455567777777777777775544322 334 6677777777777665 3
Q ss_pred HHHHHH-HhccCCCccEEEeecCcc--------hhh-c------------hhccc--ccccCCCCccEEEeeCCCCCCCC
Q 037964 78 QSVLSK-SLCELRCLDSLKLVNESN--------MLG-I------------LQIDI--AEYQFPQSLTHLSLTNTKLKDDP 133 (202)
Q Consensus 78 ~~~~~~-~l~~l~~L~~L~l~~~~~--------~~~-~------------~~~~~--~~~~~l~~L~~L~l~~~~~~~~~ 133 (202)
...++. .++.+++|+.|+++++.- .+. + +.+.. .+.. +++|+.|++++|.+....
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE-CPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT-CTTCSEEECTTCCEECCT
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC-CccCCeEECCCCcCCCcc
Confidence 323332 355666666666655210 000 0 00000 2344 556666666666555443
Q ss_pred C-ccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccce--e--eCCCccccccEEeeecCC
Q 037964 134 M-PTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEW--T--MGTKATWKLEHLIINPCA 201 (202)
Q Consensus 134 ~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~--~~~~~~~~L~~L~i~~c~ 201 (202)
+ ..++.+++|++|++++|.+.+.. +...+.+++|+.|++++|. +... + .....+++|++|++++|.
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSLLDISS-EQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCCCBTTC-TTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred cchhhhCcccCCEEECCCCccCCcC-HHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc
Confidence 2 23556666666666655554322 2234456777777777776 3321 1 123456777777777763
No 32
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=5.1e-18 Score=127.52 Aligned_cols=185 Identities=16% Similarity=0.133 Sum_probs=126.6
Q ss_pred CCCccccccH-HHhccccccEEEeCceeecccccc-ccccCCCcceecccc-cCch--hHHHcCcCCccceeeEEeecCc
Q 037964 2 PLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGK-YCSALENLNFISALH-LSSC--TRDILGRLPNLQSLKIFEDLSH 76 (202)
Q Consensus 2 ~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~-~~~~--~~~~l~~l~~L~~L~l~~~~~~ 76 (202)
+++.++.+|. ++.++++|++|++++|.....++. .++.+++|++|+..+ .... +..++.++++|++|++++|.
T Consensus 39 ~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-- 116 (239)
T 2xwt_C 39 IETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-- 116 (239)
T ss_dssp ESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC--
T ss_pred eCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC--
Confidence 4577778776 678888888888888332444444 577888888887654 3333 33337888888888888886
Q ss_pred hHHHHHHHhccCCCcc---EEEeecCcchhhchhccc---ccccCCCCcc-EEEeeCCCCCCCCCccccCCCCcceEEec
Q 037964 77 YQSVLSKSLCELRCLD---SLKLVNESNMLGILQIDI---AEYQFPQSLT-HLSLTNTKLKDDPMPTLEKLPHLLVLKLK 149 (202)
Q Consensus 77 ~~~~~~~~l~~l~~L~---~L~l~~~~~~~~~~~~~~---~~~~~l~~L~-~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 149 (202)
. ..+|. ++.+++|+ .|+++++..+ . .+ .+.. +++|+ .|++++|++...+...+.. ++|+.|+++
T Consensus 117 l-~~lp~-~~~l~~L~~L~~L~l~~N~~l----~-~i~~~~~~~-l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 117 L-KMFPD-LTKVYSTDIFFILEITDNPYM----T-SIPVNAFQG-LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp C-CSCCC-CTTCCBCCSEEEEEEESCTTC----C-EECTTTTTT-TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred C-ccccc-cccccccccccEEECCCCcch----h-hcCcccccc-hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 2 23554 77777777 8888764111 1 11 3566 78888 9999998888666555555 789999998
Q ss_pred cCc-cCCceEEEcCCCC-CcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 150 QNS-FSRRKLACCSGGF-PCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 150 ~~~-~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
+|. +.. ..+.....+ ++|+.|++++|. +..++.. .+++|+.|++.++.
T Consensus 188 ~n~~l~~-i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTV-IDKDAFGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCE-ECTTTTTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred CCCCccc-CCHHHhhccccCCcEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence 774 542 111234456 889999999887 6665544 68899999998875
No 33
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.73 E-value=1.1e-17 Score=141.20 Aligned_cols=197 Identities=18% Similarity=0.190 Sum_probs=128.8
Q ss_pred CCCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCc--h-hHHHcCcCCccceeeEEeecCch
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSS--C-TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~--~-~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
+.++.++++|.++.++++|++|++++|......|..++.+++|++|+...... . +..+++++++|++|++++|. .
T Consensus 285 l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~--l 362 (606)
T 3t6q_A 285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD--I 362 (606)
T ss_dssp CTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSC--C
T ss_pred ccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCc--c
Confidence 45677888888888888888888888444444455667777777776444321 1 22225566666666666654 2
Q ss_pred HHHH--HHHhccCCCccEEEeecCc------chhh----c---------hhccc---ccccCCCCccEEEeeCCCCCCCC
Q 037964 78 QSVL--SKSLCELRCLDSLKLVNES------NMLG----I---------LQIDI---AEYQFPQSLTHLSLTNTKLKDDP 133 (202)
Q Consensus 78 ~~~~--~~~l~~l~~L~~L~l~~~~------~~~~----~---------~~~~~---~~~~~l~~L~~L~l~~~~~~~~~ 133 (202)
.+.. +..++.+++|+.|+++++. ..+. + +.+.. ++.. +++|+.|++++|.+...+
T Consensus 363 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~ 441 (606)
T 3t6q_A 363 ETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN-LHLLKVLNLSHSLLDISS 441 (606)
T ss_dssp CEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT-CTTCCEEECTTCCCBTTC
T ss_pred ccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC-cccCCEEECCCCccCCcC
Confidence 2211 4445555566666555421 0110 0 11111 3566 889999999999998888
Q ss_pred CccccCCCCcceEEeccCccCCceEE--EcCCCCCcccEEEeccccCccce-eeCCCccccccEEeeecCC
Q 037964 134 MPTLEKLPHLLVLKLKQNSFSRRKLA--CCSGGFPCLKFLHLKSMLWLDEW-TMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 134 ~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~c~ 201 (202)
+..++++++|++|++++|.+.+..++ .....+++|+.|++++|. +..+ +...+.+++|++|++++|.
T Consensus 442 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCccChhhhccccCCCEEECCCCc
Confidence 88899999999999998888664432 234568899999999987 5554 3445678889999888764
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=4.3e-18 Score=148.67 Aligned_cols=184 Identities=17% Similarity=0.120 Sum_probs=120.7
Q ss_pred CccccccHHHhccccccEEEeCceeecc-----------------ccccccc--cCCCcceecccccC--ch-hHHHcCc
Q 037964 4 SFIDHTPEDIWKMHKLRHLNFGYIKLHA-----------------HPGKYCS--ALENLNFISALHLS--SC-TRDILGR 61 (202)
Q Consensus 4 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~-----------------~~p~~l~--~l~~L~~L~~~~~~--~~-~~~~l~~ 61 (202)
++++.||.+++++++|++|++++|.+.+ .+|..++ ++++|+.|+...+. +. |.. +++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGG
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHH-HhC
Confidence 4555577778888888888888854444 2777766 78888887755543 22 656 778
Q ss_pred CCccceeeEEeecCchHH-HHHHHhccCC-------CccEEEeecCcchhhchhccc----ccccCCCCccEEEeeCCCC
Q 037964 62 LPNLQSLKIFEDLSHYQS-VLSKSLCELR-------CLDSLKLVNESNMLGILQIDI----AEYQFPQSLTHLSLTNTKL 129 (202)
Q Consensus 62 l~~L~~L~l~~~~~~~~~-~~~~~l~~l~-------~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~ 129 (202)
+++|+.|++++|+. ..+ .+|..+++++ +|+.|+++++. +. .+ .+.. +++|+.|++++|.+
T Consensus 514 L~~L~~L~Ls~N~~-lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-----L~-~ip~~~~l~~-L~~L~~L~Ls~N~l 585 (876)
T 4ecn_A 514 LPELQSLNIACNRG-ISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-----LE-EFPASASLQK-MVKLGLLDCVHNKV 585 (876)
T ss_dssp CSSCCEEECTTCTT-SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-----CC-BCCCHHHHTT-CTTCCEEECTTSCC
T ss_pred CCCCCEEECcCCCC-cccccchHHHHhhhhcccccCCccEEEeeCCc-----CC-ccCChhhhhc-CCCCCEEECCCCCc
Confidence 88888888877731 122 5666666554 78888877532 11 11 1455 77788888888877
Q ss_pred CCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCc-ccEEEeccccCccceeeCCCcc--ccccEEeeecCC
Q 037964 130 KDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPC-LKFLHLKSMLWLDEWTMGTKAT--WKLEHLIINPCA 201 (202)
Q Consensus 130 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~l~~~~~~~~~~--~~L~~L~i~~c~ 201 (202)
...+ .++.+++|+.|++++|.+. .++.....+++ |+.|++++|. +..++...... ++|+.|++++|.
T Consensus 586 ~~lp--~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 586 RHLE--AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp CBCC--CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSC
T ss_pred ccch--hhcCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCc
Confidence 7432 7777888888888877765 23444556777 8888888877 55555433333 348888887763
No 35
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=1.4e-17 Score=127.53 Aligned_cols=176 Identities=20% Similarity=0.133 Sum_probs=104.9
Q ss_pred HhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCc
Q 037964 13 IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCL 91 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 91 (202)
...+++|+.|++++ +....++ +++.+++|+.|+....... ++. ++++++|++|++++|. ..+..+..++.+++|
T Consensus 37 ~~~l~~L~~L~l~~-~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 37 QNELNSIDQIIANN-SDIKSVQ-GIQYLPNVRYLALGGNKLHDISA-LKELTNLTYLILTGNQ--LQSLPNGVFDKLTNL 111 (272)
T ss_dssp HHHHTTCCEEECTT-SCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECTTSC--CCCCCTTTTTTCTTC
T ss_pred cccccceeeeeeCC-CCccccc-ccccCCCCcEEECCCCCCCCchh-hcCCCCCCEEECCCCc--cCccChhHhcCCcCC
Confidence 45667777777777 3333333 3666677777665444433 445 6777777777777765 444444456677777
Q ss_pred cEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCccc
Q 037964 92 DSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLK 169 (202)
Q Consensus 92 ~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 169 (202)
+.|+++++. +.+.. .+.. +++|+.|++++|++...++..++++++|++|++++|.+.+.. +...+.+++|+
T Consensus 112 ~~L~L~~n~-----l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~ 184 (272)
T 3rfs_A 112 KELVLVENQ-----LQSLPDGVFDK-LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLK 184 (272)
T ss_dssp CEEECTTSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCC
T ss_pred CEEECCCCc-----CCccCHHHhcc-CCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccC-HHHhcCCccCC
Confidence 777776532 01110 2445 667777777777777666666667777777777766654321 11234567777
Q ss_pred EEEeccccCccceeeC-CCccccccEEeeecCC
Q 037964 170 FLHLKSMLWLDEWTMG-TKATWKLEHLIINPCA 201 (202)
Q Consensus 170 ~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 201 (202)
.|++++|. +..++.. ...+++|++|++++++
T Consensus 185 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 185 DLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp EEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCc-CCccCHHHHhCCcCCCEEEccCCC
Confidence 77777776 5444333 3456777777776653
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.72 E-value=1.7e-17 Score=136.30 Aligned_cols=189 Identities=16% Similarity=0.147 Sum_probs=121.2
Q ss_pred CCCCccccc-cHHHhccccccEEEeCceeecccccc-ccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecC
Q 037964 1 IPLSFIDHT-PEDIWKMHKLRHLNFGYIKLHAHPGK-YCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLS 75 (202)
Q Consensus 1 ~~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~ 75 (202)
+.++.++.+ |.++.++++|++|++++ |....+|. .++++++|++|+....... +.. +.++++|+.|++++|.
T Consensus 63 L~~n~i~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~- 139 (477)
T 2id5_A 63 LNENIVSAVEPGAFNNLFNLRTLGLRS-NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDND- 139 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEEECCTT-
T ss_pred CCCCccCEeChhhhhCCccCCEEECCC-CcCCccCcccccCCCCCCEEECCCCccccCChhH-ccccccCCEEECCCCc-
Confidence 356777777 66788999999999998 54445554 4688888888886555433 444 8888888888888886
Q ss_pred chHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc
Q 037964 76 HYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 76 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
.....+..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|.+...+...+..+++|++|+++++..
T Consensus 140 -l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~l~~-l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~ 212 (477)
T 2id5_A 140 -LVYISHRAFSGLNSLEQLTLEKCN-----LTSIPTEALSH-LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212 (477)
T ss_dssp -CCEECTTSSTTCTTCCEEEEESCC-----CSSCCHHHHTT-CTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT
T ss_pred -cceeChhhccCCCCCCEEECCCCc-----CcccChhHhcc-cCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc
Confidence 445556677788888888887632 01000 2455 66777777777776666555666666666666665443
Q ss_pred CCce----------------------EE-EcCCCCCcccEEEeccccCccceeeC-CCccccccEEeeecC
Q 037964 154 SRRK----------------------LA-CCSGGFPCLKFLHLKSMLWLDEWTMG-TKATWKLEHLIINPC 200 (202)
Q Consensus 154 ~~~~----------------------~~-~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c 200 (202)
.+.. ++ .....+++|+.|++++|. +..++.. ...+++|++|++++|
T Consensus 213 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n 282 (477)
T 2id5_A 213 LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG 282 (477)
T ss_dssp CCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS
T ss_pred ccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCC
Confidence 2211 01 112346667777777766 4444332 345677777777765
No 37
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.72 E-value=1.3e-17 Score=145.68 Aligned_cols=179 Identities=12% Similarity=0.080 Sum_probs=138.0
Q ss_pred ccHHHh--ccccccEEEeCceeeccccccccccCCCcceecccccC---c-h-hHHHcCcC-------CccceeeEEeec
Q 037964 9 TPEDIW--KMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLS---S-C-TRDILGRL-------PNLQSLKIFEDL 74 (202)
Q Consensus 9 lp~~~~--~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~---~-~-~~~~l~~l-------~~L~~L~l~~~~ 74 (202)
+|.+++ ++++|++|++++|.....+|..++++++|+.|+...+. + . |.+ ++++ ++|+.|++++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~-i~~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKAD-WTRLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHH-HHHHHHCTTTTTTCCEEECCSSC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHH-HHhhhhcccccCCccEEEeeCCc
Confidence 999987 99999999999966788999999999999999965543 3 3 555 5555 499999999997
Q ss_pred CchHHHHHH--HhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCC-cceEEecc
Q 037964 75 SHYQSVLSK--SLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPH-LLVLKLKQ 150 (202)
Q Consensus 75 ~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~ 150 (202)
.. .+|. .++++++|+.|+++++. +. .+ .+.. +++|+.|++++|.+.. .+..+.++++ |+.|++++
T Consensus 560 --L~-~ip~~~~l~~L~~L~~L~Ls~N~-----l~-~lp~~~~-L~~L~~L~Ls~N~l~~-lp~~l~~l~~~L~~L~Ls~ 628 (876)
T 4ecn_A 560 --LE-EFPASASLQKMVKLGLLDCVHNK-----VR-HLEAFGT-NVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSH 628 (876)
T ss_dssp --CC-BCCCHHHHTTCTTCCEEECTTSC-----CC-BCCCCCT-TSEESEEECCSSCCSC-CCTTSCEECTTCCEEECCS
T ss_pred --CC-ccCChhhhhcCCCCCEEECCCCC-----cc-cchhhcC-CCcceEEECcCCcccc-chHHHhhccccCCEEECcC
Confidence 44 7888 99999999999998643 11 22 4566 8899999999999994 4567889999 99999998
Q ss_pred CccCCceEEEcCCCC--CcccEEEeccccCcccee---eCCC--ccccccEEeeecCC
Q 037964 151 NSFSRRKLACCSGGF--PCLKFLHLKSMLWLDEWT---MGTK--ATWKLEHLIINPCA 201 (202)
Q Consensus 151 ~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~~~---~~~~--~~~~L~~L~i~~c~ 201 (202)
|.+. .++...... ++|+.|++++|.....++ ...+ ..++|+.|++++|.
T Consensus 629 N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~ 684 (876)
T 4ecn_A 629 NKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684 (876)
T ss_dssp SCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC
T ss_pred CCCC--cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc
Confidence 8876 234333333 459999999998333222 2222 34589999999874
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.72 E-value=4e-17 Score=128.14 Aligned_cols=185 Identities=17% Similarity=0.111 Sum_probs=115.8
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.+..+|..+. +++++|++++|......+..++.+++|++|+....... +.. ++++++|++|++++|. .
T Consensus 39 ~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~---l 112 (330)
T 1xku_A 39 SDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKNQ---L 112 (330)
T ss_dssp TTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSSC---C
T ss_pred cCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEEECCCCc---C
Confidence 4567788887554 68999999995444444456899999999986655433 556 9999999999999886 2
Q ss_pred HHHHH----------------------HhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCC
Q 037964 79 SVLSK----------------------SLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPM 134 (202)
Q Consensus 79 ~~~~~----------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~ 134 (202)
..+|. .+.++++|+.|+++++.-. -.+.. .+.. +++|+.|++++|.+...+.
T Consensus 113 ~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~~~~~~-l~~L~~L~l~~n~l~~l~~ 188 (330)
T 1xku_A 113 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK---SSGIENGAFQG-MKKLSYIRIADTNITTIPQ 188 (330)
T ss_dssp SBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCC---GGGBCTTGGGG-CTTCCEEECCSSCCCSCCS
T ss_pred CccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCC---ccCcChhhccC-CCCcCEEECCCCccccCCc
Confidence 22332 3344444444444432100 00000 3444 6666667776666665432
Q ss_pred ccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceee-CCCccccccEEeeecCC
Q 037964 135 PTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTM-GTKATWKLEHLIINPCA 201 (202)
Q Consensus 135 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~ 201 (202)
.. .++|++|++++|.+.+.. +.....+++|+.|++++|. +..++. ....+++|++|++++|.
T Consensus 189 ~~---~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 189 GL---PPSLTELHLDGNKITKVD-AASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp SC---CTTCSEEECTTSCCCEEC-TGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSC
T ss_pred cc---cccCCEEECCCCcCCccC-HHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCc
Confidence 22 156777777766654321 2334567888888888887 555543 34567888888888764
No 39
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.71 E-value=9.3e-18 Score=128.54 Aligned_cols=164 Identities=23% Similarity=0.226 Sum_probs=126.8
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
.++.++.++. +..+++|++|++++ +....++ .++.+++|++|+....... +..+++++++|++|++++|. ..+
T Consensus 49 ~~~~i~~~~~-l~~l~~L~~L~l~~-n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~ 123 (272)
T 3rfs_A 49 NNSDIKSVQG-IQYLPNVRYLALGG-NKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ--LQS 123 (272)
T ss_dssp TTSCCCCCTT-GGGCTTCCEEECTT-SCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCC
T ss_pred CCCCcccccc-cccCCCCcEEECCC-CCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCc--CCc
Confidence 4566777664 88999999999999 4444444 6888999999986655433 43338899999999999997 555
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCce
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRK 157 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 157 (202)
..+..++.+++|+.|+++++. +.+.. .+.. +++|+.|++++|++...++..++.+++|++|++++|.+.+..
T Consensus 124 ~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 124 LPDGVFDKLTNLTYLNLAHNQ-----LQSLPKGVFDK-LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cCHHHhccCCCCCEEECCCCc-----cCccCHHHhcc-CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 555668899999999998642 11111 3566 899999999999999888778899999999999988886532
Q ss_pred EEEcCCCCCcccEEEecccc
Q 037964 158 LACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~~~ 177 (202)
+.....+++|+.|++++|+
T Consensus 198 -~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 198 -DGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp -TTTTTTCTTCCEEECCSSC
T ss_pred -HHHHhCCcCCCEEEccCCC
Confidence 2234678999999999987
No 40
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=1.1e-17 Score=129.94 Aligned_cols=163 Identities=17% Similarity=0.096 Sum_probs=103.5
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccc-cccCCCcceecccccCch-----hHHHcCcCCccceeeEEeecC
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKY-CSALENLNFISALHLSSC-----TRDILGRLPNLQSLKIFEDLS 75 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~~~-----~~~~l~~l~~L~~L~l~~~~~ 75 (202)
.++.++++|..+. ++|++|++++ +....+|.+ ++.+++|++|+....... +.. +..+++|++|++++|.
T Consensus 15 ~~~~l~~ip~~~~--~~l~~L~L~~-n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~~~L~~L~Ls~n~- 89 (306)
T 2z66_A 15 NSKGLTSVPTGIP--SSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS-DFGTTSLKYLDLSFNG- 89 (306)
T ss_dssp CSSCCSSCCSCCC--TTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH-HHSCSCCCEEECCSCS-
T ss_pred CCCCcccCCCCCC--CCCCEEECCC-CccCccCHhHhhccccCCEEECCCCccCcccCcccc-cccccccCEEECCCCc-
Confidence 4567888887553 6999999999 555566665 689999999986554422 345 6778999999999986
Q ss_pred chHHHHHHHhccCCCccEEEeecCcchhhchhcc--c-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCc
Q 037964 76 HYQSVLSKSLCELRCLDSLKLVNESNMLGILQID--I-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNS 152 (202)
Q Consensus 76 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 152 (202)
...++..+..+++|+.|+++++.- .+. . .+.. +++|+.|++++|.+....+..++++++|++|++++|.
T Consensus 90 --i~~l~~~~~~l~~L~~L~l~~n~l-----~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 90 --VITMSSNFLGLEQLEHLDFQHSNL-----KQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp --EEEEEEEEETCTTCCEEECTTSEE-----ESSTTTTTTTT-CTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE
T ss_pred --cccChhhcCCCCCCCEEECCCCcc-----cccccchhhhh-ccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc
Confidence 334666788889999998876320 000 0 2334 5566666666665555545555555666666665555
Q ss_pred cCCceEEEcCCCCCcccEEEecccc
Q 037964 153 FSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 153 ~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
+.+...+.....+++|+.|++++|.
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSC
T ss_pred cccccchhHHhhCcCCCEEECCCCC
Confidence 4432223333445555555555544
No 41
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.70 E-value=3.3e-17 Score=133.71 Aligned_cols=87 Identities=18% Similarity=0.126 Sum_probs=62.9
Q ss_pred cccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccce-eeCCCccc
Q 037964 112 EYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEW-TMGTKATW 190 (202)
Q Consensus 112 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~ 190 (202)
+.. +++|+.|++++|.+...++..++++++|++|++++|.+.+. .+...+.+++|+.|++++|. +..+ +.....++
T Consensus 295 ~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 371 (455)
T 3v47_A 295 FSH-FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI-DSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLP 371 (455)
T ss_dssp TTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CGGGGTTCTTCCEEECCSSC-CCEECTTTTTTCT
T ss_pred ccc-CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc-ChhHhcCcccCCEEECCCCc-ccccChhhccccc
Confidence 455 77888888888888877777788888888888887766432 13345668888888888887 5544 33456678
Q ss_pred cccEEeeecCC
Q 037964 191 KLEHLIINPCA 201 (202)
Q Consensus 191 ~L~~L~i~~c~ 201 (202)
+|++|++++|.
T Consensus 372 ~L~~L~L~~N~ 382 (455)
T 3v47_A 372 NLKELALDTNQ 382 (455)
T ss_dssp TCCEEECCSSC
T ss_pred cccEEECCCCc
Confidence 88888888763
No 42
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.70 E-value=2.9e-17 Score=125.66 Aligned_cols=167 Identities=23% Similarity=0.223 Sum_probs=130.9
Q ss_pred CCCCccccccH-HHhccccccEEEeCceeeccccccc-cccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCc
Q 037964 1 IPLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKY-CSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSH 76 (202)
Q Consensus 1 ~~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~ 76 (202)
++++.++.+|. ++.++++|++|++++ +....+|.. +..+++|++|+....... +..++..+++|++|++++|.
T Consensus 44 l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-- 120 (270)
T 2o6q_A 44 LQSNKLSSLPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-- 120 (270)
T ss_dssp CCSSCCSCCCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSC--
T ss_pred CcCCCCCeeCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCc--
Confidence 46788889886 689999999999999 554556655 588999999986655433 44438999999999999997
Q ss_pred hHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccC
Q 037964 77 YQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
.....+..++.+++|+.|+++++. +.+.. .+.. +++|+.|++++|.+...++..+.++++|++|++++|.+.
T Consensus 121 l~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 121 LKSLPPRVFDSLTKLTYLSLGYNE-----LQSLPKGVFDK-LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred cCeeCHHHhCcCcCCCEEECCCCc-----CCccCHhHccC-CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 555556678999999999998642 01110 3566 899999999999999988888999999999999988776
Q ss_pred CceEEEcCCCCCcccEEEecccc
Q 037964 155 RRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 155 ~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
... +.....+++|+.|++++|+
T Consensus 195 ~~~-~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 195 RVP-EGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCC-TTTTTTCTTCCEEECCSSC
T ss_pred cCC-HHHhccccCCCEEEecCCC
Confidence 421 2234568999999999987
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.70 E-value=1.8e-17 Score=131.30 Aligned_cols=186 Identities=12% Similarity=0.082 Sum_probs=139.8
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
+++.++++|.++. ++|++|++++|......+..++.+++|++|+....... +.. ++++++|++|++++|. ..
T Consensus 39 ~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~--l~ 113 (353)
T 2z80_A 39 SSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS-FSSLGSLEHLDLSYNY--LS 113 (353)
T ss_dssp CSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSC--CS
T ss_pred CCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh-cCCCCCCCEEECCCCc--CC
Confidence 5678899998765 59999999994444444446899999999986655433 445 9999999999999997 44
Q ss_pred HHHHHHhccCCCccEEEeecCcchhhchhccc----ccccCCCCccEEEeeCC-CCCCCCCccccCCCCcceEEeccCcc
Q 037964 79 SVLSKSLCELRCLDSLKLVNESNMLGILQIDI----AEYQFPQSLTHLSLTNT-KLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
+..+..++++++|++|+++++. +. .+ .+.. +++|+.|++++| .+...++..++++++|++|++++|.+
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~-----l~-~l~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNP-----YK-TLGETSLFSH-LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCC-----CS-SSCSSCSCTT-CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred cCCHhHhCCCccCCEEECCCCC-----Cc-ccCchhhhcc-CCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 4444558999999999998642 01 11 2566 899999999999 47766677889999999999998887
Q ss_pred CCceEEEcCCCCCcccEEEeccccCccceeeC-CCccccccEEeeecCC
Q 037964 154 SRRKLACCSGGFPCLKFLHLKSMLWLDEWTMG-TKATWKLEHLIINPCA 201 (202)
Q Consensus 154 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 201 (202)
.+.. +.....+++|+.|++++|. +..++.. ...+++|++|++++|.
T Consensus 187 ~~~~-~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 187 QSYE-PKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp CEEC-TTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB
T ss_pred CccC-HHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc
Confidence 5422 3445678899999999987 5544332 2346888888888763
No 44
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=1.5e-17 Score=127.42 Aligned_cols=187 Identities=14% Similarity=0.103 Sum_probs=138.4
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
+..+.++|..+. ++|++|++++|......+..++.+++|++|+..+.... +..+++++++|++|++++|. ....
T Consensus 16 ~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~ 91 (276)
T 2z62_A 16 ELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--IQSL 91 (276)
T ss_dssp TSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CCEE
T ss_pred CCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc--cCcc
Confidence 456777887553 57999999994444444457899999999986665433 33339999999999999997 5555
Q ss_pred HHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCC-CccccCCCCcceEEeccCccCCce
Q 037964 81 LSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDP-MPTLEKLPHLLVLKLKQNSFSRRK 157 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~ 157 (202)
.+..+.++++|+.|+++++. +.+.. .+.. +++|+.|++++|.+.... +..++++++|++|++++|.+.+..
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETN-----LASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSC-----CCCSTTCCCTT-CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred ChhhhcCCccccEEECCCCC-----ccccCchhccc-CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCC
Confidence 66789999999999997632 01110 3666 899999999999998754 678999999999999988875421
Q ss_pred EEEcCCCCCccc----EEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 158 LACCSGGFPCLK----FLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 158 ~~~~~~~~~~L~----~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
+.....+++|+ .|++++|. +..++.......+|++|++++|.
T Consensus 166 -~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n~ 211 (276)
T 2z62_A 166 -CTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTNQ 211 (276)
T ss_dssp -GGGGHHHHTCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSSC
T ss_pred -HHHhhhhhhccccceeeecCCCc-ccccCccccCCCcccEEECCCCc
Confidence 11222344455 89999988 77776655556689999998763
No 45
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.70 E-value=4.6e-17 Score=128.48 Aligned_cols=127 Identities=23% Similarity=0.236 Sum_probs=82.7
Q ss_pred cCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccc
Q 037964 59 LGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTL 137 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l 137 (202)
++.+++|++|++++|. .. .++. +..+++|+.|+++++. -..+ .+.. +++|+.|++++|++... ..+
T Consensus 217 ~~~~~~L~~L~l~~n~--l~-~~~~-~~~l~~L~~L~l~~n~------l~~~~~~~~-l~~L~~L~l~~n~l~~~--~~~ 283 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNK--IT-DLSP-LANLSQLTWLEIGTNQ------ISDINAVKD-LTKLKMLNVGSNQISDI--SVL 283 (347)
T ss_dssp GGGCTTCCEEECCSSC--CC-CCGG-GTTCTTCCEEECCSSC------CCCCGGGTT-CTTCCEEECCSSCCCCC--GGG
T ss_pred hhcCCcCCEEEccCCc--cC-CCcc-hhcCCCCCEEECCCCc------cCCChhHhc-CCCcCEEEccCCccCCC--hhh
Confidence 4555666666666654 21 1222 5566666666665421 0011 3556 78888888888887764 467
Q ss_pred cCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 138 EKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
..+++|+.|++++|.+.+.. +.....+++|+.|++++|. +..++. ...+++|++|++++|+
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQLGNED-MEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp GGCTTCSEEECCSSCCCGGG-HHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred cCCCCCCEEECcCCcCCCcC-hhHhhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 78888888888877765433 2334568889999999888 655544 5668899999998875
No 46
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.70 E-value=9.4e-18 Score=142.68 Aligned_cols=38 Identities=16% Similarity=0.234 Sum_probs=19.9
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
+.+|+.|++++|++...+...+..+++|++|++++|.+
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l 469 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML 469 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC
Confidence 34555666666655544443444455555555554444
No 47
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=5.9e-18 Score=132.95 Aligned_cols=192 Identities=18% Similarity=0.154 Sum_probs=115.8
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccc-cccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCch
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAH-PGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
.++.++..+..+.++++|++|++++|..... +|..+..+++|++|+...+... +.. ++++++|++|++++|....
T Consensus 78 ~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~ 156 (336)
T 2ast_B 78 PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGFS 156 (336)
T ss_dssp TTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSCC
T ss_pred CCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCCCCCC
Confidence 3455555555566777777777777444333 6666677777777775544322 445 7777778888877773222
Q ss_pred HHHHHHHhccCCCccEEEeecCcchhhchhcc-c--ccccCCC-CccEEEeeCC--CCCC-CCCccccCCCCcceEEecc
Q 037964 78 QSVLSKSLCELRCLDSLKLVNESNMLGILQID-I--AEYQFPQ-SLTHLSLTNT--KLKD-DPMPTLEKLPHLLVLKLKQ 150 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~--~~~~~l~-~L~~L~l~~~--~~~~-~~~~~l~~l~~L~~L~l~~ 150 (202)
...++..+..+++|+.|+++++..+ .+. + .+.. ++ +|+.|++++| .+.. ..+..+..+++|++|++++
T Consensus 157 ~~~l~~~~~~~~~L~~L~l~~~~~l----~~~~~~~~~~~-l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~ 231 (336)
T 2ast_B 157 EFALQTLLSSCSRLDELNLSWCFDF----TEKHVQVAVAH-VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 231 (336)
T ss_dssp HHHHHHHHHHCTTCCEEECCCCTTC----CHHHHHHHHHH-SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred HHHHHHHHhcCCCCCEEcCCCCCCc----ChHHHHHHHHh-cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCC
Confidence 2346666777777887777664111 111 1 3455 66 7888888777 3432 1233455777888888877
Q ss_pred Cc-cCCceEEEcCCCCCcccEEEeccccCccce-eeCCCccccccEEeeecC
Q 037964 151 NS-FSRRKLACCSGGFPCLKFLHLKSMLWLDEW-TMGTKATWKLEHLIINPC 200 (202)
Q Consensus 151 ~~-~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~c 200 (202)
|. +.+.. +.....+++|+.|++++|...... ......+++|++|++++|
T Consensus 232 ~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 232 SVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCCGGG-GGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcCCHHH-HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 66 33332 223455678888888877533221 112345777888887766
No 48
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.69 E-value=1.8e-17 Score=138.20 Aligned_cols=141 Identities=17% Similarity=0.156 Sum_probs=81.3
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
++.++++|..+. ++|++|++++|......|..++.+++|++|+....... +.. ++++++|++|++++|. ..+
T Consensus 14 ~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~--l~~ 88 (549)
T 2z81_A 14 SRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA-FYSLGSLEHLDLSDNH--LSS 88 (549)
T ss_dssp TSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECTTSC--CCS
T ss_pred CCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhh-ccccccCCEEECCCCc--cCc
Confidence 456666776543 56777777774444444555677777777765444333 334 6777777777777765 445
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhc-cc--ccccCCCCccEEEeeCCC-CCCCCCccccCCCCcceEEeccCccC
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQI-DI--AEYQFPQSLTHLSLTNTK-LKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~--~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
..+..++++++|++|+++++. +.+ .+ .+.. +++|+.|++++|. +...+...++++++|++|++++|.+.
T Consensus 89 ~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~~-l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 89 LSSSWFGPLSSLKYLNLMGNP-----YQTLGVTSLFPN-LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp CCHHHHTTCTTCCEEECTTCC-----CSSSCSSCSCTT-CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred cCHHHhccCCCCcEEECCCCc-----ccccchhhhhhc-cCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 555557777777777776532 010 00 2444 5666666666665 33333345566666666666655543
No 49
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=5.9e-17 Score=122.61 Aligned_cols=165 Identities=18% Similarity=0.159 Sum_probs=112.2
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
.++.++.+|..+. +++++|++++|......+..++.+++|++|+..+.... +..++.++++|++|++++|. ...
T Consensus 22 ~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~ 97 (251)
T 3m19_A 22 QGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ--LAS 97 (251)
T ss_dssp TTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCC
T ss_pred CCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc--ccc
Confidence 4566777777654 57888888884445555556788888888875554433 33327788888888888886 444
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCce
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRK 157 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 157 (202)
..+..++.+++|+.|+++++. +.+.. .+.. +++|+.|++++|++...++..++++++|++|++++|.+.+..
T Consensus 98 ~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 98 LPLGVFDHLTQLDKLYLGGNQ-----LKSLPSGVFDR-LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cChhHhcccCCCCEEEcCCCc-----CCCcChhHhcc-CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 444567778888888887532 01100 2455 778888888888888777667788888888888877765422
Q ss_pred EEEcCCCCCcccEEEecccc
Q 037964 158 LACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~~~ 177 (202)
+.....+++|+.|++++|+
T Consensus 172 -~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 172 -HGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp -TTTTTTCTTCCEEECCSCC
T ss_pred -HHHHhCCCCCCEEEeeCCc
Confidence 2234567788888888876
No 50
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.68 E-value=1.9e-16 Score=124.92 Aligned_cols=89 Identities=22% Similarity=0.117 Sum_probs=49.3
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
.++.+..+|. +..+++|++|++++ +....++. +..+++|++|+..+.... ++. ++++++|++|++++|. .. .
T Consensus 52 ~~~~i~~~~~-~~~~~~L~~L~l~~-n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~l~~n~--i~-~ 124 (347)
T 4fmz_A 52 AGEKVASIQG-IEYLTNLEYLNLNG-NQITDISP-LSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDN--IS-D 124 (347)
T ss_dssp CSSCCCCCTT-GGGCTTCCEEECCS-SCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECTTSC--CC-C
T ss_pred eCCccccchh-hhhcCCccEEEccC-Cccccchh-hhcCCcCCEEEccCCcccCchH-HcCCCcCCEEECcCCc--cc-C
Confidence 4555666654 66677777777777 33333443 666666666664444333 444 6666666666666664 11 1
Q ss_pred HHHHhccCCCccEEEeec
Q 037964 81 LSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~ 98 (202)
++. +..+++|+.|++++
T Consensus 125 ~~~-~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 125 ISP-LANLTKMYSLNLGA 141 (347)
T ss_dssp CGG-GTTCTTCCEEECTT
T ss_pred chh-hccCCceeEEECCC
Confidence 222 55555555555554
No 51
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.67 E-value=5.7e-17 Score=135.21 Aligned_cols=168 Identities=16% Similarity=0.207 Sum_probs=123.6
Q ss_pred CCCCcccccc-HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCch
Q 037964 1 IPLSFIDHTP-EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 1 ~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
++++.++.++ .++.++++|++|++++|......|..++.+++|++|+....... +.++++++++|++|++++|. .
T Consensus 33 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l 110 (549)
T 2z81_A 33 LSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP--Y 110 (549)
T ss_dssp CCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC--C
T ss_pred CcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc--c
Confidence 4677888874 67999999999999995556666677999999999986665533 43339999999999999996 3
Q ss_pred HH-HHHHHhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc
Q 037964 78 QS-VLSKSLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 78 ~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
.. ..+..++++++|+.|+++++.. .+.+ .+.. +++|+.|++++|.+.+..+..++++++|++|+++.+..
T Consensus 111 ~~~~~~~~~~~l~~L~~L~L~~n~~-----~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 111 QTLGVTSLFPNLTNLQTLRIGNVET-----FSEIRRIDFAG-LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp SSSCSSCSCTTCTTCCEEEEEESSS-----CCEECTTTTTT-CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred cccchhhhhhccCCccEEECCCCcc-----ccccCHhhhhc-ccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 33 3466789999999999987431 1111 3566 88899999999998887777888888888888876654
Q ss_pred CCceEEEcCCCCCcccEEEecccc
Q 037964 154 SRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 154 ~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
.... ....+.+++|+.|++++|.
T Consensus 185 ~~~~-~~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 185 AFLL-EIFADILSSVRYLELRDTN 207 (549)
T ss_dssp TTHH-HHHHHSTTTBSEEEEESCB
T ss_pred cccc-hhhHhhcccccEEEccCCc
Confidence 3211 1112346777777777776
No 52
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=3.3e-16 Score=118.50 Aligned_cols=171 Identities=17% Similarity=0.112 Sum_probs=133.9
Q ss_pred ccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccE
Q 037964 17 HKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDS 93 (202)
Q Consensus 17 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~ 93 (202)
...+++++++ +....+|.++. ++++.|+....... +.. ++++++|++|++++|. ..+..+..+..+++|+.
T Consensus 14 ~~~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 14 EGKKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTGLATLSDAT-FRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTELGT 87 (251)
T ss_dssp GGGTEEECTT-CCCSSCCSCCC--TTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCE
T ss_pred CCCeEEecCC-CCccccCCCCC--CCCCEEEccCCCcCccCHhH-hcCcccCCEEECCCCc--CCccCHhHhccCCcCCE
Confidence 4678999999 77778887665 68888886555433 445 9999999999999997 56666677899999999
Q ss_pred EEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEE
Q 037964 94 LKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFL 171 (202)
Q Consensus 94 L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 171 (202)
|+++++. +.+.. .+.. +++|+.|++++|++...+...+.++++|++|++++|.+.+.. +...+.+++|+.|
T Consensus 88 L~L~~n~-----l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L 160 (251)
T 3m19_A 88 LGLANNQ-----LASLPLGVFDH-LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTL 160 (251)
T ss_dssp EECTTSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEE
T ss_pred EECCCCc-----ccccChhHhcc-cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEE
Confidence 9998642 11111 3566 899999999999999888888899999999999988876422 2235678999999
Q ss_pred EeccccCccceee-CCCccccccEEeeecCC
Q 037964 172 HLKSMLWLDEWTM-GTKATWKLEHLIINPCA 201 (202)
Q Consensus 172 ~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~ 201 (202)
++++|. +..++. ....+++|++|++.+++
T Consensus 161 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 161 SLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence 999998 666554 34668999999999875
No 53
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.66 E-value=7.9e-17 Score=135.90 Aligned_cols=187 Identities=16% Similarity=0.085 Sum_probs=138.5
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
++.+++++|..+. +++++|++++|......+..++++++|++|+....... +.. ++++++|++|++++|. ..
T Consensus 19 ~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~-~~~l~~L~~L~Ls~n~--l~ 93 (606)
T 3vq2_A 19 MDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKA-WHGLHHLSNLILTGNP--IQ 93 (606)
T ss_dssp TTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTT-TTTCTTCCEEECTTCC--CC
T ss_pred cCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHH-hhchhhcCEeECCCCc--cc
Confidence 4667889998664 89999999995445555557899999999986665433 445 9999999999999997 66
Q ss_pred HHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCC-CCccccCCCCcceEEeccCccCC
Q 037964 79 SVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDD-PMPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
+..|..++++++|++|+++++. +.+.. .+.. +++|+.|++++|.+... .+..++++++|++|++++|.+.+
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETK-----LASLESFPIGQ-LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSC-----CCCSSSSCCTT-CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred ccChhhcCCcccCCEEEccCCc-----cccccccccCC-CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 6668899999999999998642 01100 4667 89999999999999863 36789999999999999887754
Q ss_pred ceEEEcCCCCCcc----cEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 156 RKLACCSGGFPCL----KFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 156 ~~~~~~~~~~~~L----~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
.. +...+.+++| ..|++++|. +..++.......+|++|++++|.
T Consensus 168 ~~-~~~~~~l~~L~~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~n~ 215 (606)
T 3vq2_A 168 IT-VNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNF 215 (606)
T ss_dssp EC-TTTTHHHHHCTTCCCEEECTTCC-CCEECTTTTTTCEEEEEEEESCC
T ss_pred cC-hhhhhhhhccccccceeeccCCC-cceeCcccccCceeeeeeccCCc
Confidence 21 1112223333 378888887 66665554444588898888763
No 54
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.66 E-value=5.2e-16 Score=120.03 Aligned_cols=167 Identities=22% Similarity=0.165 Sum_probs=96.4
Q ss_pred HhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCc
Q 037964 13 IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCL 91 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 91 (202)
...+++|++|++++ +....++ +++.+++|++|+....... ... +.++++|++|++++|. .. .+ ..++.+++|
T Consensus 42 ~~~l~~L~~L~l~~-~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~--l~-~~-~~l~~l~~L 114 (291)
T 1h6t_A 42 QNELNSIDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK--VK-DL-SSLKDLKKL 114 (291)
T ss_dssp HHHHHTCCEEECTT-SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--CC-CG-GGGTTCTTC
T ss_pred hhhcCcccEEEccC-CCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc--CC-CC-hhhccCCCC
Confidence 34566777777777 3333443 3666666666665444333 334 6667777777777665 22 22 236666777
Q ss_pred cEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccE
Q 037964 92 DSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKF 170 (202)
Q Consensus 92 ~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 170 (202)
+.|+++++. +. .+ .+.. +++|+.|++++|++... ..++.+++|++|++++|.+.+.. ....+++|+.
T Consensus 115 ~~L~L~~n~-----i~-~~~~l~~-l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~---~l~~l~~L~~ 182 (291)
T 1h6t_A 115 KSLSLEHNG-----IS-DINGLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV---PLAGLTKLQN 182 (291)
T ss_dssp CEEECTTSC-----CC-CCGGGGG-CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG---GGTTCTTCCE
T ss_pred CEEECCCCc-----CC-CChhhcC-CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch---hhcCCCccCE
Confidence 777776432 00 01 3445 66677777777766653 45666677777777666654422 1455667777
Q ss_pred EEeccccCccceeeCCCccccccEEeeecC
Q 037964 171 LHLKSMLWLDEWTMGTKATWKLEHLIINPC 200 (202)
Q Consensus 171 L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c 200 (202)
|++++|. ++.++. ...+++|+.|+++++
T Consensus 183 L~L~~N~-i~~l~~-l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 183 LYLSKNH-ISDLRA-LAGLKNLDVLELFSQ 210 (291)
T ss_dssp EECCSSC-CCBCGG-GTTCTTCSEEEEEEE
T ss_pred EECCCCc-CCCChh-hccCCCCCEEECcCC
Confidence 7777665 554432 345666777766654
No 55
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.65 E-value=3.1e-16 Score=117.71 Aligned_cols=183 Identities=17% Similarity=0.122 Sum_probs=135.0
Q ss_pred ccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccC-ch--hHHHcCcCCccceeeEEe-ecCchHHH
Q 037964 5 FIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLS-SC--TRDILGRLPNLQSLKIFE-DLSHYQSV 80 (202)
Q Consensus 5 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~-~~--~~~~l~~l~~L~~L~l~~-~~~~~~~~ 80 (202)
.++++|. + ..+|++|++++|......+..++.+++|++|+..... .. +..+++++++|++|++++ |. ....
T Consensus 22 ~l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~--l~~i 96 (239)
T 2xwt_C 22 DIQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN--LTYI 96 (239)
T ss_dssp SCSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT--CCEE
T ss_pred CccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC--eeEc
Confidence 3677887 3 3489999999944444444468899999999976664 33 443399999999999998 76 4444
Q ss_pred HHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCcc---EEEeeCC-CCCCCCCccccCCCCcc-eEEeccCccC
Q 037964 81 LSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLT---HLSLTNT-KLKDDPMPTLEKLPHLL-VLKLKQNSFS 154 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~---~L~l~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~ 154 (202)
.+..+..+++|+.|+++++. +.+ + .+.. +++|+ .|++++| .+...+...+.++++|+ .|++++|.+.
T Consensus 97 ~~~~f~~l~~L~~L~l~~n~-----l~~-lp~~~~-l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 97 DPDALKELPLLKFLGIFNTG-----LKM-FPDLTK-VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp CTTSEECCTTCCEEEEEEEC-----CCS-CCCCTT-CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred CHHHhCCCCCCCEEeCCCCC-----Ccc-cccccc-ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 44678899999999998632 011 1 2344 66666 9999999 99888878899999999 9999988875
Q ss_pred CceEEEcCCCCCcccEEEeccccCccceeeC-CCcc-ccccEEeeecCC
Q 037964 155 RRKLACCSGGFPCLKFLHLKSMLWLDEWTMG-TKAT-WKLEHLIINPCA 201 (202)
Q Consensus 155 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~-~~L~~L~i~~c~ 201 (202)
.++......++|+.|++++|..++.++.. ...+ ++|++|+++++.
T Consensus 170 --~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~ 216 (239)
T 2xwt_C 170 --SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS 216 (239)
T ss_dssp --EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC
T ss_pred --ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc
Confidence 23332223378999999999657766543 3556 899999998764
No 56
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=1.3e-16 Score=124.27 Aligned_cols=176 Identities=17% Similarity=0.166 Sum_probs=100.9
Q ss_pred cccccEEEeCceeecccccccc--ccCCCcceecccccCch------h-HHHcCcCCccceeeEEeecCchHHHHHHHhc
Q 037964 16 MHKLRHLNFGYIKLHAHPGKYC--SALENLNFISALHLSSC------T-RDILGRLPNLQSLKIFEDLSHYQSVLSKSLC 86 (202)
Q Consensus 16 l~~L~~L~l~~~~~~~~~p~~l--~~l~~L~~L~~~~~~~~------~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 86 (202)
+++|++|++++|......|..+ +.+++|++|+..++... . .. +..+++|++|++++|. .....+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~-~~~~~~L~~L~Ls~n~--l~~~~~~~~~ 166 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ-QWLKPGLKVLSIAQAH--SPAFSCEQVR 166 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH-TTBCSCCCEEEEECCS--SCCCCTTSCC
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH-hhhccCCCEEEeeCCC--cchhhHHHhc
Confidence 3456666666644444555544 55566666554333211 1 22 4455566666666554 3333444555
Q ss_pred cCCCccEEEeecCc-ch---h------h-c-------hh-ccc--------c-cccCCCCccEEEeeCCCCCCCCCcccc
Q 037964 87 ELRCLDSLKLVNES-NM---L------G-I-------LQ-IDI--------A-EYQFPQSLTHLSLTNTKLKDDPMPTLE 138 (202)
Q Consensus 87 ~l~~L~~L~l~~~~-~~---~------~-~-------~~-~~~--------~-~~~~l~~L~~L~l~~~~~~~~~~~~l~ 138 (202)
.+++|++|+++++. .. + . + ++ +.+ + +.. +++|+.|++++|++....+..+.
T Consensus 167 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~-l~~L~~L~Ls~N~l~~~~p~~~~ 245 (310)
T 4glp_A 167 AFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA-GVQPHSLDLSHNSLRATVNPSAP 245 (310)
T ss_dssp CCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH-TCCCSSEECTTSCCCCCCCSCCS
T ss_pred cCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc-CCCCCEEECCCCCCCccchhhHH
Confidence 55556666555532 00 0 0 0 00 011 1 244 67888888888888776555555
Q ss_pred CC---CCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 139 KL---PHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 139 ~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
.+ ++|++|++++|.+.. ++ ..-+++|+.|++++|. +..++. ...+++|++|++++++
T Consensus 246 ~~~~~~~L~~L~Ls~N~l~~--lp--~~~~~~L~~L~Ls~N~-l~~~~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 246 RCMWSSALNSLNLSFAGLEQ--VP--KGLPAKLRVLDLSSNR-LNRAPQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCCCTTCCCEECCSSCCCS--CC--SCCCSCCSCEECCSCC-CCSCCC-TTSCCCCSCEECSSTT
T ss_pred hccCcCcCCEEECCCCCCCc--hh--hhhcCCCCEEECCCCc-CCCCch-hhhCCCccEEECcCCC
Confidence 44 688888888777752 22 2234788888888887 666544 4567888888888764
No 57
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.65 E-value=2.7e-16 Score=130.47 Aligned_cols=152 Identities=18% Similarity=0.199 Sum_probs=107.5
Q ss_pred ccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc---c
Q 037964 38 SALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI---A 111 (202)
Q Consensus 38 ~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~ 111 (202)
+.+++|++|+....... +.. ++++++|++|++++|.......+|..++.+++|+.|+++++. +.+.+ .
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-----l~~~l~~~~ 394 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFEN-CGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-----VSYDEKKGD 394 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT-CCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-----CBCCGGGCS
T ss_pred hhCCcccEEEeECCccChhhhhh-hccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-----CCcccccch
Confidence 55667777765444322 555 888888999988888733334677888888899999888643 12212 2
Q ss_pred cccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeC-CCccc
Q 037964 112 EYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMG-TKATW 190 (202)
Q Consensus 112 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~ 190 (202)
+.. +++|+.|++++|++.+..+..+. ++|+.|++++|.+. .++.....+++|+.|++++|. +..++.. ...++
T Consensus 395 ~~~-l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~ 468 (520)
T 2z7x_B 395 CSW-TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLT 468 (520)
T ss_dssp CCC-CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred hcc-CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCc-CCccCHHHhccCC
Confidence 455 78889999988888754443333 68899999888775 234444578899999999987 7777665 56688
Q ss_pred cccEEeeecCC
Q 037964 191 KLEHLIINPCA 201 (202)
Q Consensus 191 ~L~~L~i~~c~ 201 (202)
+|++|++++++
T Consensus 469 ~L~~L~l~~N~ 479 (520)
T 2z7x_B 469 SLQKIWLHTNP 479 (520)
T ss_dssp TCCEEECCSSC
T ss_pred cccEEECcCCC
Confidence 89999998875
No 58
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=138.74 Aligned_cols=186 Identities=16% Similarity=0.152 Sum_probs=135.0
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccC--ch--hHHHcCcCCccceeeEEeecCch
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLS--SC--TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~--~~--~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
++.+++.+|. -.++|++|++++|......|..++++++|+.|+..... .. +.. ++++++|++|++++|. .
T Consensus 12 s~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N~--l 85 (844)
T 3j0a_A 12 RFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSSK--I 85 (844)
T ss_dssp SCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTCC--C
T ss_pred cCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCCc--C
Confidence 3567888887 56799999999955565667778999999999865552 22 444 9999999999999987 6
Q ss_pred HHHHHHHhccCCCccEEEeecCcchhhchhccc----ccccCCCCccEEEeeCCCCCCCCC-ccccCCCCcceEEeccCc
Q 037964 78 QSVLSKSLCELRCLDSLKLVNESNMLGILQIDI----AEYQFPQSLTHLSLTNTKLKDDPM-PTLEKLPHLLVLKLKQNS 152 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~ 152 (202)
....|..++++++|+.|+++++. +.+.+ ++.. +++|+.|++++|.+....+ ..++++++|++|++++|.
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~~~-L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCG-----LSDAVLKDGYFRN-LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCC-----CSSCCSTTCCCSS-CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred cccCHhHccCCcccCEeeCcCCC-----CCcccccCccccc-cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 66678889999999999998643 12222 3667 8899999999998887654 578899999999999877
Q ss_pred cCCceEEEcCCCC--CcccEEEeccccCccceeeCCCcccc------ccEEeeecC
Q 037964 153 FSRRKLACCSGGF--PCLKFLHLKSMLWLDEWTMGTKATWK------LEHLIINPC 200 (202)
Q Consensus 153 ~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~~~~~~~~~~~------L~~L~i~~c 200 (202)
+.+.. +.....+ ++|+.|++++|......+...+.++. |+.|++++|
T Consensus 160 i~~~~-~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 160 IFLVC-EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp CCCCC-SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred CCeeC-HHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 75422 1122223 77888888888744444444343443 888888776
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=1.2e-16 Score=131.98 Aligned_cols=81 Identities=17% Similarity=0.158 Sum_probs=46.3
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEE
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHL 195 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 195 (202)
+++|+.|++++|.+... .....+++|+.|++++|.+.+ ++.....+++|+.|++++|. +..++.....+++|+.|
T Consensus 168 l~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L 242 (487)
T 3oja_A 168 SDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHF 242 (487)
T ss_dssp TTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEE
T ss_pred CCcccEEecCCCccccc--cccccCCCCCEEECCCCCCCC--CCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEE
Confidence 55666666666665543 222345666666666555543 22234456666677776666 55555555556677777
Q ss_pred eeecCC
Q 037964 196 IINPCA 201 (202)
Q Consensus 196 ~i~~c~ 201 (202)
++++|+
T Consensus 243 ~l~~N~ 248 (487)
T 3oja_A 243 DLRGNG 248 (487)
T ss_dssp ECTTCC
T ss_pred EcCCCC
Confidence 776654
No 60
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.64 E-value=5.2e-16 Score=128.74 Aligned_cols=93 Identities=17% Similarity=0.171 Sum_probs=45.6
Q ss_pred CCCcccccc-HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTP-EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+++.++.+| .++.++++|++|++++|......|..++++++|++|+....... ++. . .+++|++|++++|. ..+
T Consensus 29 s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~-~l~~L~~L~L~~N~--l~~ 104 (520)
T 2z7x_B 29 SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC-H-PTVNLKHLDLSFNA--FDA 104 (520)
T ss_dssp CSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC-C-CCCCCSEEECCSSC--CSS
T ss_pred CCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc-c-ccCCccEEeccCCc--ccc
Confidence 445555554 34666666666666663333334455555666665554333222 212 1 44555555555553 222
Q ss_pred -HHHHHhccCCCccEEEeec
Q 037964 80 -VLSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 80 -~~~~~l~~l~~L~~L~l~~ 98 (202)
.+|..++++++|++|++++
T Consensus 105 ~~~p~~~~~l~~L~~L~L~~ 124 (520)
T 2z7x_B 105 LPICKEFGNMSQLKFLGLST 124 (520)
T ss_dssp CCCCGGGGGCTTCCEEEEEE
T ss_pred ccchhhhccCCcceEEEecC
Confidence 2344555555555555544
No 61
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.64 E-value=6.7e-16 Score=112.72 Aligned_cols=149 Identities=17% Similarity=0.149 Sum_probs=101.9
Q ss_pred HhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCc
Q 037964 13 IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCL 91 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 91 (202)
...+++|++|++++ +....+| ++..+++|++|+....... ++. +..+++|++|++++|. .....+..++.+++|
T Consensus 40 ~~~l~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 40 EAQMNSLTYITLAN-INVTDLT-GIEYAHNIKDLTINNIHATNYNP-ISGLSNLERLRIMGKD--VTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHHTCCEEEEES-SCCSCCT-TGGGCTTCSEEEEESCCCSCCGG-GTTCTTCCEEEEECTT--CBGGGSCCCTTCTTC
T ss_pred hhhcCCccEEeccC-CCccChH-HHhcCCCCCEEEccCCCCCcchh-hhcCCCCCEEEeECCc--cCcccChhhcCCCCC
Confidence 36778889999988 5545666 6888888888886666544 666 8888888888888886 555566677777888
Q ss_pred cEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCC-CCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcc
Q 037964 92 DSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTK-LKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCL 168 (202)
Q Consensus 92 ~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 168 (202)
+.|+++++. +.+.. .+.. +++|+.|++++|. +... ..+..+++|++|++++|.+.+- + ....+++|
T Consensus 115 ~~L~Ls~n~-----i~~~~~~~l~~-l~~L~~L~L~~n~~i~~~--~~l~~l~~L~~L~l~~n~i~~~--~-~l~~l~~L 183 (197)
T 4ezg_A 115 TLLDISHSA-----HDDSILTKINT-LPKVNSIDLSYNGAITDI--MPLKTLPELKSLNIQFDGVHDY--R-GIEDFPKL 183 (197)
T ss_dssp CEEECCSSB-----CBGGGHHHHTT-CSSCCEEECCSCTBCCCC--GGGGGCSSCCEEECTTBCCCCC--T-TGGGCSSC
T ss_pred CEEEecCCc-----cCcHhHHHHhh-CCCCCEEEccCCCCcccc--HhhcCCCCCCEEECCCCCCcCh--H-HhccCCCC
Confidence 888877532 11111 3555 7777777777776 5543 3567777777777776666541 2 34556777
Q ss_pred cEEEecccc
Q 037964 169 KFLHLKSML 177 (202)
Q Consensus 169 ~~L~l~~~~ 177 (202)
+.|++++|+
T Consensus 184 ~~L~l~~N~ 192 (197)
T 4ezg_A 184 NQLYAFSQT 192 (197)
T ss_dssp CEEEECBC-
T ss_pred CEEEeeCcc
Confidence 777777765
No 62
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=1.1e-15 Score=119.02 Aligned_cols=168 Identities=13% Similarity=0.087 Sum_probs=133.0
Q ss_pred HhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCc
Q 037964 13 IWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCL 91 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L 91 (202)
..++++|++|++++ +....+| .+..+++|++|+....... ... ++++++|++|++++|. ..+ + ..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~-~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~--l~~-~-~~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFG-TGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP--LKN-V-SAIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTT-SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC--CSC-C-GGGTTCTTC
T ss_pred HHHcCCcCEEEeeC-CCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc--CCC-c-hhhcCCCCC
Confidence 56789999999999 5555566 5888999999986665544 555 8999999999999997 322 3 368999999
Q ss_pred cEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccE
Q 037964 92 DSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKF 170 (202)
Q Consensus 92 ~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 170 (202)
+.|+++++. +. .+ .+.. +++|+.|++++|.+...+ .++.+++|++|++++|.+.+.. ....+++|+.
T Consensus 110 ~~L~l~~n~-----l~-~~~~l~~-l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~---~l~~l~~L~~ 177 (308)
T 1h6u_A 110 KTLDLTSTQ-----IT-DVTPLAG-LSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT---PLANLSKLTT 177 (308)
T ss_dssp CEEECTTSC-----CC-CCGGGTT-CTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG---GGTTCTTCCE
T ss_pred CEEECCCCC-----CC-CchhhcC-CCCCCEEECCCCccCcCc--cccCCCCccEEEccCCcCCCCh---hhcCCCCCCE
Confidence 999998643 01 11 4667 899999999999998754 3889999999999988876522 2678999999
Q ss_pred EEeccccCccceeeCCCccccccEEeeecCC
Q 037964 171 LHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 171 L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
|++++|. +..++. ...+++|++|++++|.
T Consensus 178 L~l~~n~-l~~~~~-l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 178 LKADDNK-ISDISP-LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp EECCSSC-CCCCGG-GGGCTTCCEEECTTSC
T ss_pred EECCCCc-cCcChh-hcCCCCCCEEEccCCc
Confidence 9999998 665554 4678999999999874
No 63
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=7.7e-17 Score=126.58 Aligned_cols=184 Identities=14% Similarity=0.111 Sum_probs=138.7
Q ss_pred cHHHhcc--ccccEEEeCceeeccccccccccCCCcceecccccCc--h-hHHHcCcCCccceeeEEeecCchHHHHHHH
Q 037964 10 PEDIWKM--HKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSS--C-TRDILGRLPNLQSLKIFEDLSHYQSVLSKS 84 (202)
Q Consensus 10 p~~~~~l--~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~--~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 84 (202)
|..+.++ +++++|++++|......+ .+..+++|++|+...... . ...++.++++|++|++++|. ..+..+..
T Consensus 61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~--l~~~~~~~ 137 (336)
T 2ast_B 61 PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR--LSDPIVNT 137 (336)
T ss_dssp HHHHHHHHHTTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB--CCHHHHHH
T ss_pred HHHHHhhhhccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc--cCHHHHHH
Confidence 5667777 899999999944444444 467789999998655432 2 33338999999999999997 77889999
Q ss_pred hccCCCccEEEeecCcchhhchhcc-c--ccccCCCCccEEEeeCC-CCCCC-CCccccCCC-CcceEEeccCc--cCCc
Q 037964 85 LCELRCLDSLKLVNESNMLGILQID-I--AEYQFPQSLTHLSLTNT-KLKDD-PMPTLEKLP-HLLVLKLKQNS--FSRR 156 (202)
Q Consensus 85 l~~l~~L~~L~l~~~~~~~~~~~~~-~--~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~-~L~~L~l~~~~--~~~~ 156 (202)
++++++|++|+++++..+ .+. + .+.. +++|+.|++++| .+... .+..+..++ +|++|++++|. +.+.
T Consensus 138 l~~~~~L~~L~L~~~~~l----~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~ 212 (336)
T 2ast_B 138 LAKNSNLVRLNLSGCSGF----SEFALQTLLSS-CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS 212 (336)
T ss_dssp HTTCTTCSEEECTTCBSC----CHHHHHHHHHH-CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH
T ss_pred HhcCCCCCEEECCCCCCC----CHHHHHHHHhc-CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHH
Confidence 999999999999875221 111 1 3566 899999999999 88754 245677899 99999999884 4433
Q ss_pred eEEEcCCCCCcccEEEeccccCcc-ceeeCCCccccccEEeeecCC
Q 037964 157 KLACCSGGFPCLKFLHLKSMLWLD-EWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 157 ~~~~~~~~~~~L~~L~l~~~~~l~-~~~~~~~~~~~L~~L~i~~c~ 201 (202)
.++.....+++|+.|++++|..+. ..+.....+++|++|++++|.
T Consensus 213 ~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 213 DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 334444568999999999998443 334445678999999999985
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=2.8e-16 Score=122.88 Aligned_cols=175 Identities=17% Similarity=0.096 Sum_probs=102.5
Q ss_pred hccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCcc
Q 037964 14 WKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLD 92 (202)
Q Consensus 14 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 92 (202)
..+++|++|++++|......|..++.+++|++|+..+.... ... ++.+++|++|++++|. .. .+...++|+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~--l~-----~l~~~~~L~ 102 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY--VQ-----ELLVGPSIE 102 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE--EE-----EEEECTTCC
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc--cc-----cccCCCCcC
Confidence 34556777777774334444455666777777665444433 333 6666777777776664 11 111234555
Q ss_pred EEEeecCcc------hhh----c------hhccc--ccccCCCCccEEEeeCCCCCCCCCcccc-CCCCcceEEeccCcc
Q 037964 93 SLKLVNESN------MLG----I------LQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLE-KLPHLLVLKLKQNSF 153 (202)
Q Consensus 93 ~L~l~~~~~------~~~----~------~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~ 153 (202)
.|+++++.- .+. + +.+.. .+.. +++|+.|++++|.+...++..+. .+++|++|++++|.+
T Consensus 103 ~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 103 TLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp EEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred EEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhc-cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 555443210 000 0 01100 3445 67788888888877765555553 677888888877776
Q ss_pred CCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 154 SRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 154 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
... + ....+++|+.|++++|. +..++.....+++|++|++++|.
T Consensus 182 ~~~--~-~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 182 YDV--K-GQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp CEE--E-CCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC
T ss_pred ccc--c-cccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCc
Confidence 532 2 23347888888888887 66666656677888888888763
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.63 E-value=2.3e-16 Score=123.36 Aligned_cols=186 Identities=13% Similarity=0.060 Sum_probs=133.4
Q ss_pred CCCCcccccc-HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-h----------------HH-HcCc
Q 037964 1 IPLSFIDHTP-EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-T----------------RD-ILGR 61 (202)
Q Consensus 1 ~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~----------------~~-~l~~ 61 (202)
++++.++.++ .++.++++|++|++++|......+ +..+++|++|+....... . .+ ....
T Consensus 41 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~ 118 (317)
T 3o53_A 41 LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR 118 (317)
T ss_dssp CTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECC
T ss_pred CcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccc
Confidence 4678888886 579999999999999954443333 788888888874433211 0 00 0123
Q ss_pred CCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCCcccc
Q 037964 62 LPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPMPTLE 138 (202)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 138 (202)
+++|+.|++++|. .....+..++.+++|+.|+++++. +.+.. .... +++|+.|++++|.+... ....
T Consensus 119 ~~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~~-l~~L~~L~L~~N~l~~~--~~~~ 188 (317)
T 3o53_A 119 GQGKKNIYLANNK--ITMLRDLDEGCRSRVQYLDLKLNE-----IDTVNFAELAAS-SDTLEHLNLQYNFIYDV--KGQV 188 (317)
T ss_dssp CSSCEEEECCSSC--CCSGGGBCTGGGSSEEEEECTTSC-----CCEEEGGGGGGG-TTTCCEEECTTSCCCEE--ECCC
T ss_pred cCCCCEEECCCCC--CCCccchhhhccCCCCEEECCCCC-----CCcccHHHHhhc-cCcCCEEECCCCcCccc--cccc
Confidence 5667777777776 444445577788888988887632 11111 2245 79999999999998875 3344
Q ss_pred CCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 139 KLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
.+++|++|++++|.+.+ ++.....+++|+.|++++|. +..++.....+++|+.|++++++
T Consensus 189 ~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CCTTCCEEECCSSCCCE--ECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCC
T ss_pred ccccCCEEECCCCcCCc--chhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCC
Confidence 68999999999888764 33345678999999999998 77777777778999999999875
No 66
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.63 E-value=1.8e-15 Score=124.09 Aligned_cols=78 Identities=18% Similarity=0.158 Sum_probs=39.1
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEE
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHL 195 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 195 (202)
+++|+.|++++|++.+.++ ++.+++|+.|++++|.+.+. .....+++|+.|++++|. +..+.. ...+++|++|
T Consensus 308 l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L 380 (466)
T 1o6v_A 308 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQL 380 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSC-CCBCGG-GTTCTTCCEE
T ss_pred CCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCc-cCccch-hhcCCCCCEE
Confidence 4455555555555444322 44555555555554444331 123445666666666665 333322 3455666666
Q ss_pred eeecC
Q 037964 196 IINPC 200 (202)
Q Consensus 196 ~i~~c 200 (202)
++++|
T Consensus 381 ~l~~n 385 (466)
T 1o6v_A 381 GLNDQ 385 (466)
T ss_dssp ECCCE
T ss_pred eccCC
Confidence 66654
No 67
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.63 E-value=9.9e-16 Score=134.03 Aligned_cols=83 Identities=20% Similarity=0.166 Sum_probs=43.8
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeC-CCccccccE
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMG-TKATWKLEH 194 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~ 194 (202)
+++|+.|++++|++...++..+.++++|++|++++|.+.+.. +.....+++|+.|++++|. +..++.. ...+++|++
T Consensus 289 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~ 366 (844)
T 3j0a_A 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGLPKVAYIDLQKNH-IAIIQDQTFKFLEKLQT 366 (844)
T ss_dssp CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-SCSCSSCTTCCEEECCSCC-CCCCCSSCSCSCCCCCE
T ss_pred CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-HHHhcCCCCCCEEECCCCC-CCccChhhhcCCCCCCE
Confidence 455555555555555554455555566666666555543211 2233455666666666664 4433322 244566666
Q ss_pred EeeecC
Q 037964 195 LIINPC 200 (202)
Q Consensus 195 L~i~~c 200 (202)
|++++|
T Consensus 367 L~Ls~N 372 (844)
T 3j0a_A 367 LDLRDN 372 (844)
T ss_dssp EEEETC
T ss_pred EECCCC
Confidence 666655
No 68
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.63 E-value=5.3e-16 Score=132.54 Aligned_cols=189 Identities=19% Similarity=0.148 Sum_probs=114.3
Q ss_pred CCCccccc-cHHHhccccccEEEeCceeeccccc-cccccCCCcceecccccCch-------------------------
Q 037964 2 PLSFIDHT-PEDIWKMHKLRHLNFGYIKLHAHPG-KYCSALENLNFISALHLSSC------------------------- 54 (202)
Q Consensus 2 ~~~~~~~l-p~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~~~~~~~~------------------------- 54 (202)
.++.++.+ |.++..+++|++|++++|.....+| ..+..+++|++|+.......
T Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 468 (680)
T 1ziw_A 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN 468 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBC
T ss_pred CCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccc
Confidence 45566665 4567777778888877744444444 34666666666664333211
Q ss_pred ----hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhc---------cc-ccccCCCCcc
Q 037964 55 ----TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQI---------DI-AEYQFPQSLT 120 (202)
Q Consensus 55 ----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~---------~~-~~~~~l~~L~ 120 (202)
+.. ++++++|+.|++++|. .....+..++.+++|+.|+++++. +.+ .. .+.. +++|+
T Consensus 469 ~~~~p~~-~~~l~~L~~L~Ls~N~--l~~i~~~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~~~~~~~~~-l~~L~ 539 (680)
T 1ziw_A 469 VDSSPSP-FQPLRNLTILDLSNNN--IANINDDMLEGLEKLEILDLQHNN-----LARLWKHANPGGPIYFLKG-LSHLH 539 (680)
T ss_dssp TTCSSCT-TTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSC-----CGGGGSTTSTTSCCCTTTT-CTTCC
T ss_pred cccCCcc-cccCCCCCEEECCCCC--CCcCChhhhccccccCEEeCCCCC-----ccccchhhccCCcchhhcC-CCCCC
Confidence 223 4445555555555554 333333345555555555555421 010 00 2455 78888
Q ss_pred EEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCC-C-ccccccEEeee
Q 037964 121 HLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGT-K-ATWKLEHLIIN 198 (202)
Q Consensus 121 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~-~~~~L~~L~i~ 198 (202)
.|++++|++...+...++++++|+.|++++|.+..-. +.....+++|+.|++++|. +..++... + .+++|++++++
T Consensus 540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP-ASVFNNQVSLKSLNLQKNL-ITSVEKKVFGPAFRNLTELDMR 617 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSC-CCBCCHHHHHHHHTTCSEEECT
T ss_pred EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCC-HhHhCCCCCCCEEECCCCc-CCccChhHhcccccccCEEEcc
Confidence 8888888888777677888888888888877775311 1123467888888888886 65554332 2 57888888888
Q ss_pred cCC
Q 037964 199 PCA 201 (202)
Q Consensus 199 ~c~ 201 (202)
++|
T Consensus 618 ~N~ 620 (680)
T 1ziw_A 618 FNP 620 (680)
T ss_dssp TCC
T ss_pred CCC
Confidence 765
No 69
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.63 E-value=2.2e-16 Score=124.08 Aligned_cols=189 Identities=16% Similarity=0.191 Sum_probs=116.5
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++.+|..+. ++|++|++++|......|..++.+++|++|+....... +.. ++++++|++|++++|. .
T Consensus 41 ~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~---l 114 (332)
T 2ft3_A 41 SDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKLYISKNH---L 114 (332)
T ss_dssp CSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-STTCTTCCEEECCSSC---C
T ss_pred CCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH-hhCcCCCCEEECCCCc---C
Confidence 3455666666543 56777777773333333445666777777665444332 344 6777777777777664 2
Q ss_pred HHHHHHhccCCCccEEEeecCc------chhh-c-------hhc--------------------------cc---ccccC
Q 037964 79 SVLSKSLCELRCLDSLKLVNES------NMLG-I-------LQI--------------------------DI---AEYQF 115 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~------~~~~-~-------~~~--------------------------~~---~~~~~ 115 (202)
..+|..+. ++|+.|+++++. ..+. + +.+ .+ ....
T Consensus 115 ~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~- 191 (332)
T 2ft3_A 115 VEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL- 191 (332)
T ss_dssp CSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSS-
T ss_pred CccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccc-
Confidence 23444333 567777776521 1110 0 000 00 0011
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEE
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHL 195 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 195 (202)
.++|+.|++++|.+...++..+.++++|++|++++|.+.+.. +.....+++|+.|++++|. +..++.....+++|++|
T Consensus 192 ~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L 269 (332)
T 2ft3_A 192 PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE-NGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVV 269 (332)
T ss_dssp CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC-TTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEE
T ss_pred cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC-hhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEE
Confidence 246777777777777776677888888888888877765422 2234568899999999987 77777767778999999
Q ss_pred eeecCC
Q 037964 196 IINPCA 201 (202)
Q Consensus 196 ~i~~c~ 201 (202)
++++++
T Consensus 270 ~l~~N~ 275 (332)
T 2ft3_A 270 YLHTNN 275 (332)
T ss_dssp ECCSSC
T ss_pred ECCCCC
Confidence 998764
No 70
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.63 E-value=7.8e-16 Score=128.98 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=91.0
Q ss_pred ccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc---c
Q 037964 38 SALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI---A 111 (202)
Q Consensus 38 ~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~ 111 (202)
+.+++|++|+....... +.. ++++++|+.|++++|+......+|..++++++|+.|+++++. +.+.+ .
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~-----l~~~~~~~~ 423 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS-----LNSHAYDRT 423 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC-----CBSCCSSCC
T ss_pred cCCCCceEEECCCCccccchhhh-hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc-----CCCccChhh
Confidence 34455555553333221 444 666777777777766522223556666677777777776532 11111 2
Q ss_pred cccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeC-CCccc
Q 037964 112 EYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMG-TKATW 190 (202)
Q Consensus 112 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~ 190 (202)
+.. +++|+.|++++|++.+..+..+. ++|+.|++++|.+. .++.....+++|+.|++++|. +..++.. ...++
T Consensus 424 ~~~-l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~ 497 (562)
T 3a79_B 424 CAW-AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLT 497 (562)
T ss_dssp CCC-CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC--CCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCT
T ss_pred hcC-cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc--ccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCC
Confidence 444 66777777777776643332222 57777888777654 234444567888888888887 6666655 56678
Q ss_pred cccEEeeecCC
Q 037964 191 KLEHLIINPCA 201 (202)
Q Consensus 191 ~L~~L~i~~c~ 201 (202)
+|+.|++++++
T Consensus 498 ~L~~L~l~~N~ 508 (562)
T 3a79_B 498 SLQYIWLHDNP 508 (562)
T ss_dssp TCCCEECCSCC
T ss_pred CCCEEEecCCC
Confidence 88888888765
No 71
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.63 E-value=7.5e-16 Score=131.62 Aligned_cols=130 Identities=21% Similarity=0.157 Sum_probs=86.1
Q ss_pred ccccEEEeCceeeccccccccccCCCcceecccccCch---h-HHHcCcCCccceeeEEeecCchHHHHHHHhccCCCcc
Q 037964 17 HKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---T-RDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLD 92 (202)
Q Consensus 17 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 92 (202)
++|+.|++++|......|..++.+++|+.|+....... + .. +..+++|++|++++|. .....+..+..+++|+
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~l~~L~~L~Ls~n~--l~~~~~~~~~~~~~L~ 457 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE-WRGLENIFEIYLSYNK--YLQLTRNSFALVPSLQ 457 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGG-GTTCTTCCEEECCSCS--EEECCTTTTTTCTTCC
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccc-ccCcccccEEecCCCC--cceeChhhhhcCcccc
Confidence 68999999996566667778999999999986655432 3 45 8999999999999987 5555556667777777
Q ss_pred EEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc
Q 037964 93 SLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 93 ~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
.|++.++.-. -.+.+ ++.. +++|+.|++++|++...++..+.++++|++|++++|.+
T Consensus 458 ~L~l~~n~l~---~~~~~p~~~~~-l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 516 (680)
T 1ziw_A 458 RLMLRRVALK---NVDSSPSPFQP-LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516 (680)
T ss_dssp EEECTTSCCB---CTTCSSCTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cchhcccccc---ccccCCccccc-CCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc
Confidence 7777653200 00011 3444 55666666666666655555555566666666655544
No 72
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.62 E-value=2.5e-15 Score=123.16 Aligned_cols=178 Identities=17% Similarity=0.091 Sum_probs=107.5
Q ss_pred CCCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHH
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
++++.++.+| ++..+++|++|++++ +....+| ++.+++|++|+....... . + ++++++|++|++++|. ..+
T Consensus 49 Ls~n~l~~~~-~l~~l~~L~~L~Ls~-n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~-~~~l~~L~~L~L~~N~--l~~ 120 (457)
T 3bz5_A 49 CHNSSITDMT-GIEKLTGLTKLICTS-NNITTLD--LSQNTNLTYLACDSNKLTNL-D-VTPLTKLTYLNCDTNK--LTK 120 (457)
T ss_dssp CCSSCCCCCT-TGGGCTTCSEEECCS-SCCSCCC--CTTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECCSSC--CSC
T ss_pred ccCCCcccCh-hhcccCCCCEEEccC-CcCCeEc--cccCCCCCEEECcCCCCcee-e-cCCCCcCCEEECCCCc--CCe
Confidence 3567788887 688899999999998 4433444 777888888875544433 3 3 7778888888888776 222
Q ss_pred HHHHHhccCCCccEEEeecCc-chhh------c----hhc-----ccccccCCCCccEEEeeCCCCCCCCCccccCCCCc
Q 037964 80 VLSKSLCELRCLDSLKLVNES-NMLG------I----LQI-----DIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHL 143 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~-~~~~------~----~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 143 (202)
++ ++.+++|+.|+++++. ..++ + +.+ .+.+.. +++|+.|++++|++...+ ++.+++|
T Consensus 121 -l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~-l~~L~~L~ls~n~l~~l~---l~~l~~L 193 (457)
T 3bz5_A 121 -LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTP-QTQLTTLDCSFNKITELD---VSQNKLL 193 (457)
T ss_dssp -CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTT-CTTCCEEECCSSCCCCCC---CTTCTTC
T ss_pred -ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccccccc-CCcCCEEECCCCccceec---cccCCCC
Confidence 22 6677777777776531 0000 0 111 113444 667777777777766643 5566666
Q ss_pred ceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecC
Q 037964 144 LVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200 (202)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c 200 (202)
+.|++++|.+.+. ..+.+++|+.|++++|. +..++ .+.+++|+.|+++++
T Consensus 194 ~~L~l~~N~l~~~----~l~~l~~L~~L~Ls~N~-l~~ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 194 NRLNCDTNNITKL----DLNQNIQLTFLDCSSNK-LTEID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CEEECCSSCCSCC----CCTTCTTCSEEECCSSC-CSCCC--CTTCTTCSEEECCSS
T ss_pred CEEECcCCcCCee----ccccCCCCCEEECcCCc-ccccC--ccccCCCCEEEeeCC
Confidence 6666666655432 23456666666666665 44443 344566666666554
No 73
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.62 E-value=2.2e-15 Score=123.61 Aligned_cols=180 Identities=19% Similarity=0.146 Sum_probs=127.9
Q ss_pred CCCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHH
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+.++.++.++. +.++++|++|++++|......| ++.+++|++|+....... ... +..+++|+.|++++|. ..+
T Consensus 184 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~--l~~ 257 (466)
T 1o6v_A 184 ISSNKVSDISV-LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQ--ISN 257 (466)
T ss_dssp CCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSC--CCC
T ss_pred CcCCcCCCChh-hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccchh-hhcCCCCCEEECCCCc--ccc
Confidence 35667777754 8889999999999943333333 677888888876555444 556 7888999999999886 332
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEE
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLA 159 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 159 (202)
. +. +..+++|+.|+++++. +.+...+.. +++|+.|++++|++...+ .++.+++|+.|++++|.+.+..
T Consensus 258 ~-~~-~~~l~~L~~L~l~~n~-----l~~~~~~~~-l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~-- 325 (466)
T 1o6v_A 258 L-AP-LSGLTKLTELKLGANQ-----ISNISPLAG-LTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDIS-- 325 (466)
T ss_dssp C-GG-GTTCTTCSEEECCSSC-----CCCCGGGTT-CTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCCG--
T ss_pred c-hh-hhcCCCCCEEECCCCc-----cCccccccC-CCccCeEEcCCCcccCch--hhcCCCCCCEEECcCCcCCCch--
Confidence 2 22 7788889999987632 011003556 788899999988887753 3778889999999888776532
Q ss_pred EcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 160 CCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 160 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
....+++|+.|++++|. +..++ ....+++|+.|++++|.
T Consensus 326 -~~~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 326 -PVSSLTKLQRLFFYNNK-VSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp -GGGGCTTCCEEECCSSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred -hhccCccCCEeECCCCc-cCCch-hhccCCCCCEEeCCCCc
Confidence 24578889999998886 55553 34567888888888774
No 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.62 E-value=1.3e-15 Score=127.66 Aligned_cols=93 Identities=16% Similarity=0.133 Sum_probs=51.2
Q ss_pred CCCcccccc-HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTP-EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+++.++.+| .++.++++|++|++++|......|..++++++|++|+....... .+. . .+++|++|++++|. ..+
T Consensus 60 s~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~-~l~~L~~L~Ls~N~--l~~ 135 (562)
T 3a79_B 60 SQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC-C-PMASLRHLDLSFND--FDV 135 (562)
T ss_dssp CSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS-C-CCTTCSEEECCSSC--CSB
T ss_pred CCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc-c-ccccCCEEECCCCC--ccc
Confidence 456666665 35666777777777764334444555666666666654443322 222 2 45566666666654 222
Q ss_pred -HHHHHhccCCCccEEEeec
Q 037964 80 -VLSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 80 -~~~~~l~~l~~L~~L~l~~ 98 (202)
..|..++++++|+.|++++
T Consensus 136 l~~p~~~~~l~~L~~L~L~~ 155 (562)
T 3a79_B 136 LPVCKEFGNLTKLTFLGLSA 155 (562)
T ss_dssp CCCCGGGGGCTTCCEEEEEC
T ss_pred cCchHhhcccCcccEEecCC
Confidence 2235566666666666654
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=6.7e-16 Score=127.48 Aligned_cols=181 Identities=16% Similarity=0.101 Sum_probs=112.0
Q ss_pred cccHHHhccc----cccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHH
Q 037964 8 HTPEDIWKMH----KLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLS 82 (202)
Q Consensus 8 ~lp~~~~~l~----~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 82 (202)
.+|.++..+. +|++|++++|......|..++.+++|++|+..++... ... ++.+++|++|++++|. .. .
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~--l~-~-- 94 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY--VQ-E-- 94 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE--EE-E--
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc--CC-C--
Confidence 3455555554 6777777774444445556777777777765554433 333 6677777777777765 21 1
Q ss_pred HHhccCCCccEEEeecCc--c----hhh----c------hhccc--ccccCCCCccEEEeeCCCCCCCCCcccc-CCCCc
Q 037964 83 KSLCELRCLDSLKLVNES--N----MLG----I------LQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLE-KLPHL 143 (202)
Q Consensus 83 ~~l~~l~~L~~L~l~~~~--~----~~~----~------~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L 143 (202)
+...++|+.|+++++. + .+. + +.+.. .+.. +++|+.|++++|.+.+.++..+. .+++|
T Consensus 95 --l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 95 --LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC-RSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp --EEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGG-GSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred --CCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcC-CCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 1122455555554321 0 000 0 11111 3455 67888888888887776566665 67888
Q ss_pred ceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 144 LVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
+.|++++|.+.+. .....+++|+.|++++|. +..++.....+++|+.|++++|.
T Consensus 172 ~~L~Ls~N~l~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 172 EHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK 225 (487)
T ss_dssp CEEECTTSCCCEE---ECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC
T ss_pred cEEecCCCccccc---cccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCc
Confidence 8888887776542 233458888888888887 76666666778888888888763
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.62 E-value=4.6e-16 Score=130.16 Aligned_cols=185 Identities=17% Similarity=0.137 Sum_probs=87.8
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccc--------------------cccCCCcceecccccCch-----hHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKY--------------------CSALENLNFISALHLSSC-----TRD 57 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~--------------------l~~l~~L~~L~~~~~~~~-----~~~ 57 (202)
++.++++|..+..+ +|++|++++ +....+|.. ...+++|++|+....... +..
T Consensus 291 ~~~l~~l~~~~~~~-~L~~L~l~~-n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 368 (570)
T 2z63_A 291 SVTIERVKDFSYNF-GWQHLELVN-CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQS 368 (570)
T ss_dssp SCEECSCCBCCSCC-CCSEEEEES-CBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHH
T ss_pred CccchhhhhhhccC-CccEEeecc-CcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCcccccccc
Confidence 45556666666666 666666666 333344431 033444555443322211 233
Q ss_pred HcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCC
Q 037964 58 ILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPM 134 (202)
Q Consensus 58 ~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~ 134 (202)
+..+++|++|++++|. . ..++..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|.+....+
T Consensus 369 -~~~~~~L~~L~l~~n~--l-~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~ 438 (570)
T 2z63_A 369 -DFGTTSLKYLDLSFNG--V-ITMSSNFLGLEQLEHLDFQHSN-----LKQMSEFSVFLS-LRNLIYLDISHTHTRVAFN 438 (570)
T ss_dssp -HHTCSCCCEEECCSCS--E-EEEEEEEETCTTCCEEECTTSE-----EESCTTSCTTTT-CTTCCEEECTTSCCEECCT
T ss_pred -ccccCccCEEECCCCc--c-ccccccccccCCCCEEEccCCc-----cccccchhhhhc-CCCCCEEeCcCCcccccch
Confidence 5556666666666654 2 2222235556666666665421 00000 2334 5566666666665555555
Q ss_pred ccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccce-eeCCCccccccEEeeecC
Q 037964 135 PTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEW-TMGTKATWKLEHLIINPC 200 (202)
Q Consensus 135 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~c 200 (202)
..+.++++|++|++++|.+.+..++.....+++|+.|++++|. +..+ +.....+++|++|++++|
T Consensus 439 ~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC
Confidence 5555566666666655554422233333444555555555544 3322 222233444444444443
No 77
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.61 E-value=4.7e-16 Score=114.33 Aligned_cols=171 Identities=18% Similarity=0.129 Sum_probs=123.5
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
.++.++++|..+ .++|++|++++|......+..++.+++|++|+....... +..+++.+++|++|++++|. ...
T Consensus 15 ~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~ 90 (208)
T 2o6s_A 15 YSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ--LQS 90 (208)
T ss_dssp CSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCC
T ss_pred cCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc--CCc
Confidence 456777888655 468999999994444444444788999999986655433 44437899999999999997 444
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCce
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRK 157 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 157 (202)
..+..++.+++|+.|+++++. +.+.. .+.. +++|+.|++++|.+...+...+.++++|++|++++|.+.
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--- 161 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQ-----LQSLPDGVFDK-LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--- 161 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred cCHhHhcCccCCCEEEcCCCc-----CcccCHhHhcc-CCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence 444557889999999998642 11111 2566 889999999999999887777889999999999988654
Q ss_pred EEEcCCCCCcccEEEeccccCccceeeCCCccc
Q 037964 158 LACCSGGFPCLKFLHLKSMLWLDEWTMGTKATW 190 (202)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 190 (202)
+.+++|++|.+..+.....++...+.++
T Consensus 162 -----~~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 162 -----CTCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp -----CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred -----cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence 3467888888887774456665544443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=1.1e-15 Score=118.11 Aligned_cols=164 Identities=21% Similarity=0.140 Sum_probs=128.8
Q ss_pred CCCCcccccc-HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCch
Q 037964 1 IPLSFIDHTP-EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHY 77 (202)
Q Consensus 1 ~~~~~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~ 77 (202)
+.++.++.++ .++.++++|++|++++ +....++.. +.+++|++|+....... +.. +..+++|++|++++|+ .
T Consensus 38 L~~N~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~l~~N~--l 112 (290)
T 1p9a_G 38 LSENLLYTFSLATLMPYTRLTQLNLDR-AELTKLQVD-GTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNR--L 112 (290)
T ss_dssp CTTSCCSEEEGGGGTTCTTCCEEECTT-SCCCEEECC-SCCTTCCEEECCSSCCSSCCCC-TTTCTTCCEEECCSSC--C
T ss_pred cCCCcCCccCHHHhhcCCCCCEEECCC-CccCcccCC-CCCCcCCEEECCCCcCCcCchh-hccCCCCCEEECCCCc--C
Confidence 4678888875 5799999999999999 554455543 78899999986665544 555 8899999999999997 5
Q ss_pred HHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCC
Q 037964 78 QSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
....+..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|++...+...+.++++|++|++++|.+..
T Consensus 113 ~~l~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 113 TSLPLGALRGLGELQELYLKGNE-----LKTLPPGLLTP-TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp CCCCSSTTTTCTTCCEEECTTSC-----CCCCCTTTTTT-CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cccCHHHHcCCCCCCEEECCCCC-----CCccChhhccc-ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence 54445778999999999998642 11110 3456 8899999999999999888888999999999999888763
Q ss_pred ceEEEcCCCCCcccEEEecccc
Q 037964 156 RKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 156 ~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
++......++|+.+++++|+
T Consensus 187 --ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 187 --IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp --CCTTTTTTCCCSEEECCSCC
T ss_pred --cChhhcccccCCeEEeCCCC
Confidence 34455567889999999887
No 79
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=1.5e-15 Score=128.20 Aligned_cols=155 Identities=25% Similarity=0.205 Sum_probs=67.0
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVL 81 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (202)
++.+..+| ++..+++|++|++++ |....++. +..+++|+.|++..+... ++. ++.+++|+.|++++|. ... +
T Consensus 52 ~n~i~~l~-~l~~l~~L~~L~Ls~-N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~--l~~-l 124 (605)
T 1m9s_A 52 NSDIKSVQ-GIQYLPNVTKLFLNG-NKLTDIKP-LTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHNG--ISD-I 124 (605)
T ss_dssp TCCCCCCT-TGGGCTTCCEEECTT-SCCCCCGG-GGGCTTCCEEECCSSCCCCCTT-STTCTTCCEEECTTSC--CCC-C
T ss_pred CCCCCCCh-HHccCCCCCEEEeeC-CCCCCChh-hccCCCCCEEECcCCCCCCChh-hccCCCCCEEEecCCC--CCC-C
Confidence 33444444 244555555555555 22222222 444455555443333222 333 4555555555555543 111 1
Q ss_pred HHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEE
Q 037964 82 SKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLAC 160 (202)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 160 (202)
..+..+++|+.|+++++. +. .+ .+.. +++|+.|+|++|.+...++ +..+++|+.|++++|.+.+. .
T Consensus 125 -~~l~~l~~L~~L~Ls~N~-----l~-~l~~l~~-l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l---~ 191 (605)
T 1m9s_A 125 -NGLVHLPQLESLYLGNNK-----IT-DITVLSR-LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL---R 191 (605)
T ss_dssp -GGGGGCTTCSEEECCSSC-----CC-CCGGGGS-CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC---G
T ss_pred -ccccCCCccCEEECCCCc-----cC-Cchhhcc-cCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC---h
Confidence 234445555555554321 00 00 2333 4555555555555544322 44555555555554444321 1
Q ss_pred cCCCCCcccEEEecccc
Q 037964 161 CSGGFPCLKFLHLKSML 177 (202)
Q Consensus 161 ~~~~~~~L~~L~l~~~~ 177 (202)
....+++|+.|++++|+
T Consensus 192 ~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 192 ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp GGTTCTTCSEEECCSEE
T ss_pred HHccCCCCCEEEccCCc
Confidence 23344555555555544
No 80
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.60 E-value=5.6e-15 Score=114.22 Aligned_cols=157 Identities=24% Similarity=0.190 Sum_probs=124.9
Q ss_pred CCCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHH
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+.++.++.+|. +..+++|++|++++ |....++. ++.+++|+.|+....... ++. ++.+++|++|++++|. ..+
T Consensus 53 l~~~~i~~~~~-~~~l~~L~~L~L~~-n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~--i~~ 126 (291)
T 1h6t_A 53 ANNSDIKSVQG-IQYLPNVTKLFLNG-NKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNG--ISD 126 (291)
T ss_dssp CTTSCCCCCTT-GGGCTTCCEEECCS-SCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSC--CCC
T ss_pred ccCCCcccChh-HhcCCCCCEEEccC-CccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCc--CCC
Confidence 35678888865 89999999999999 55445554 888999999986666555 777 9999999999999997 333
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceE
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKL 158 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 158 (202)
+ ..+..+++|+.|+++++. -..+ .+.. +++|+.|++++|.+...++ +..+++|++|++++|.+.+-
T Consensus 127 -~-~~l~~l~~L~~L~l~~n~------l~~~~~l~~-l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-- 193 (291)
T 1h6t_A 127 -I-NGLVHLPQLESLYLGNNK------ITDITVLSR-LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-- 193 (291)
T ss_dssp -C-GGGGGCTTCCEEECCSSC------CCCCGGGGG-CTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--
T ss_pred -C-hhhcCCCCCCEEEccCCc------CCcchhhcc-CCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC--
Confidence 2 568899999999998642 0011 4667 8999999999999988653 88999999999998887652
Q ss_pred EEcCCCCCcccEEEecccc
Q 037964 159 ACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 159 ~~~~~~~~~L~~L~l~~~~ 177 (202)
+ ....+++|+.|++++|+
T Consensus 194 ~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 194 R-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp G-GGTTCTTCSEEEEEEEE
T ss_pred h-hhccCCCCCEEECcCCc
Confidence 2 35679999999999987
No 81
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.60 E-value=6.4e-15 Score=120.70 Aligned_cols=146 Identities=16% Similarity=0.030 Sum_probs=97.7
Q ss_pred cHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccC
Q 037964 10 PEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCEL 88 (202)
Q Consensus 10 p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l 88 (202)
+.+++++++|++|++++ +....+| +++.+++|++|+....... . . ++.+++|++|++++|. ..+ ++ ++.+
T Consensus 35 ~~~~~~l~~L~~L~Ls~-n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~-~~~l~~L~~L~Ls~N~--l~~-~~--~~~l 105 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHN-SSITDMT-GIEKLTGLTKLICTSNNITTL-D-LSQNTNLTYLACDSNK--LTN-LD--VTPL 105 (457)
T ss_dssp EEEHHHHTTCCEEECCS-SCCCCCT-TGGGCTTCSEEECCSSCCSCC-C-CTTCTTCSEEECCSSC--CSC-CC--CTTC
T ss_pred ccChhHcCCCCEEEccC-CCcccCh-hhcccCCCCEEEccCCcCCeE-c-cccCCCCCEEECcCCC--Cce-ee--cCCC
Confidence 45688999999999999 4444456 6899999999986655444 3 3 8899999999999997 333 32 8899
Q ss_pred CCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcc
Q 037964 89 RCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCL 168 (202)
Q Consensus 89 ~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L 168 (202)
++|++|+++++. +.+ +.+.. +++|+.|++++|++.+.+ ++++++|++|++++|...+.. ..+.+++|
T Consensus 106 ~~L~~L~L~~N~-----l~~-l~~~~-l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L 172 (457)
T 3bz5_A 106 TKLTYLNCDTNK-----LTK-LDVSQ-NPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQL 172 (457)
T ss_dssp TTCCEEECCSSC-----CSC-CCCTT-CTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTC
T ss_pred CcCCEEECCCCc-----CCe-ecCCC-CCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCcC
Confidence 999999998642 111 13555 777777777777776642 455556666666555333221 22334444
Q ss_pred cEEEecccc
Q 037964 169 KFLHLKSML 177 (202)
Q Consensus 169 ~~L~l~~~~ 177 (202)
+.|++++|.
T Consensus 173 ~~L~ls~n~ 181 (457)
T 3bz5_A 173 TTLDCSFNK 181 (457)
T ss_dssp CEEECCSSC
T ss_pred CEEECCCCc
Confidence 444444443
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=7e-16 Score=120.18 Aligned_cols=172 Identities=17% Similarity=0.063 Sum_probs=96.1
Q ss_pred cccccEEEeCceeecc-cccc--ccccCCCcceecccccCch---hHHHc--CcCCccceeeEEeecCchHHH---H-HH
Q 037964 16 MHKLRHLNFGYIKLHA-HPGK--YCSALENLNFISALHLSSC---TRDIL--GRLPNLQSLKIFEDLSHYQSV---L-SK 83 (202)
Q Consensus 16 l~~L~~L~l~~~~~~~-~~p~--~l~~l~~L~~L~~~~~~~~---~~~~l--~~l~~L~~L~l~~~~~~~~~~---~-~~ 83 (202)
...++.+.+.++.... .+.. ....+++|++|+..+.... +.. + +++++|++|++++|. ..+. + ..
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~~~~~~L~~L~Ls~n~--i~~~~~~~~~~ 139 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPL-PLEATGLALSSLRLRNVS--WATGRSWLAEL 139 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCC-SSSCCCBCCSSCEEESCC--CSSTTSSHHHH
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhh-hhhccCCCCCEEEeeccc--ccchhhhhHHH
Confidence 3457788888732211 1111 1233567888886555432 555 6 889999999999997 3332 1 24
Q ss_pred HhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCC----------------------------CCCCCC
Q 037964 84 SLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNT----------------------------KLKDDP 133 (202)
Q Consensus 84 ~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~----------------------------~~~~~~ 133 (202)
.+..+++|++|+++++.- .+.. .+.. +++|+.|++++| ++...+
T Consensus 140 ~~~~~~~L~~L~Ls~n~l-----~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 213 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHS-----PAFSCEQVRA-FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPT 213 (310)
T ss_dssp HTTBCSCCCEEEEECCSS-----CCCCTTSCCC-CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH
T ss_pred HhhhccCCCEEEeeCCCc-----chhhHHHhcc-CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchH
Confidence 566899999999987420 0000 2233 444455555444 443211
Q ss_pred Cc---cccCCCCcceEEeccCccCCceEEEcCCCC---CcccEEEeccccCccceeeCCCccccccEEeeecC
Q 037964 134 MP---TLEKLPHLLVLKLKQNSFSRRKLACCSGGF---PCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200 (202)
Q Consensus 134 ~~---~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c 200 (202)
.. .++.+++|++|++++|.+.+.. +.....+ ++|+.|++++|. ++.++... +++|++|++++|
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~-p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~--~~~L~~L~Ls~N 282 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHNSLRATV-NPSAPRCMWSSALNSLNLSFAG-LEQVPKGL--PAKLRVLDLSSN 282 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTSCCCCCC-CSCCSSCCCCTTCCCEECCSSC-CCSCCSCC--CSCCSCEECCSC
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCccc-hhhHHhccCcCcCCEEECCCCC-CCchhhhh--cCCCCEEECCCC
Confidence 10 1245566666666666654421 1112222 577777777776 55444332 367777777765
No 83
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=3.8e-15 Score=108.69 Aligned_cols=140 Identities=17% Similarity=0.160 Sum_probs=110.9
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++++| .+..+++|++|++++ +....+ ..+..+++|++|+....... +.. ++++++|++|++++|. ..
T Consensus 52 ~~n~i~~l~-~l~~l~~L~~L~l~~-n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~Ls~n~--i~ 125 (197)
T 4ezg_A 52 ANINVTDLT-GIEYAHNIKDLTINN-IHATNY-NPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSA--HD 125 (197)
T ss_dssp ESSCCSCCT-TGGGCTTCSEEEEES-CCCSCC-GGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTCCEEECCSSB--CB
T ss_pred cCCCccChH-HHhcCCCCCEEEccC-CCCCcc-hhhhcCCCCCEEEeECCccCcccChh-hcCCCCCCEEEecCCc--cC
Confidence 467888899 799999999999999 444444 36888999999986655432 666 8999999999999998 67
Q ss_pred HHHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCC
Q 037964 79 SVLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
...+..++.+++|+.|+++++.. .+.+ .+.. +++|+.|++++|++...+ .+..+++|++|++++|.+.+
T Consensus 126 ~~~~~~l~~l~~L~~L~L~~n~~-----i~~~~~l~~-l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 126 DSILTKINTLPKVNSIDLSYNGA-----ITDIMPLKT-LPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp GGGHHHHTTCSSCCEEECCSCTB-----CCCCGGGGG-CSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred cHhHHHHhhCCCCCEEEccCCCC-----ccccHhhcC-CCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 77889999999999999986431 1112 4667 899999999999998753 78899999999999887643
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.58 E-value=3.4e-16 Score=125.40 Aligned_cols=95 Identities=11% Similarity=0.115 Sum_probs=63.4
Q ss_pred CCccccccHHHhccccccEEEeCceeeccc----cccccccCCCcceecccccCc-----h-hH------HHcCcCCccc
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAH----PGKYCSALENLNFISALHLSS-----C-TR------DILGRLPNLQ 66 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~~~~~~~-----~-~~------~~l~~l~~L~ 66 (202)
...+..++..+..+++|++|++++|..... ++..+..+++|++|+..++.. . |. .++.++++|+
T Consensus 18 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~ 97 (386)
T 2ca6_A 18 TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH 97 (386)
T ss_dssp SHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence 344566778888888888888888544443 333466778888887544311 1 22 2257788888
Q ss_pred eeeEEeecCchHH----HHHHHhccCCCccEEEeecC
Q 037964 67 SLKIFEDLSHYQS----VLSKSLCELRCLDSLKLVNE 99 (202)
Q Consensus 67 ~L~l~~~~~~~~~----~~~~~l~~l~~L~~L~l~~~ 99 (202)
+|++++|. ... .++..+..+++|++|+++++
T Consensus 98 ~L~Ls~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 98 TVRLSDNA--FGPTAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp EEECCSCC--CCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred EEECCCCc--CCHHHHHHHHHHHHhCCCCCEEECcCC
Confidence 88888876 333 57777888888888888764
No 85
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.56 E-value=1.7e-15 Score=126.70 Aligned_cols=158 Identities=18% Similarity=0.187 Sum_probs=74.1
Q ss_pred cHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhc
Q 037964 10 PEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLC 86 (202)
Q Consensus 10 p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 86 (202)
|..+.++++|++|++++ +....+|..++.+++|++|+....... +..++.++++|++|++++|. ..+..+..+.
T Consensus 366 ~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~ 442 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--TRVAFNGIFN 442 (570)
T ss_dssp EHHHHTCSCCCEEECCS-CSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSC--CEECCTTTTT
T ss_pred cccccccCccCEEECCC-CccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCc--ccccchhhhh
Confidence 34455555555555555 222223333555555555543332211 11114555555555555554 3334444555
Q ss_pred cCCCccEEEeecCcchhhchh-ccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCC
Q 037964 87 ELRCLDSLKLVNESNMLGILQ-IDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSG 163 (202)
Q Consensus 87 ~l~~L~~L~l~~~~~~~~~~~-~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 163 (202)
.+++|+.|+++++. +. +.+ .+.. +++|+.|++++|++.+..+..++++++|++|++++|.+.+.. +....
T Consensus 443 ~l~~L~~L~l~~n~-----l~~~~~p~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~ 515 (570)
T 2z63_A 443 GLSSLEVLKMAGNS-----FQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVP-DGIFD 515 (570)
T ss_dssp TCTTCCEEECTTCE-----EGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-TTTTT
T ss_pred cCCcCcEEECcCCc-----Cccccchhhhhc-ccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCC-HHHhh
Confidence 55555555554422 01 111 3344 555555555555555544455555555555555555443321 11233
Q ss_pred CCCcccEEEecccc
Q 037964 164 GFPCLKFLHLKSML 177 (202)
Q Consensus 164 ~~~~L~~L~l~~~~ 177 (202)
.+++|+.|++++|+
T Consensus 516 ~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 516 RLTSLQKIWLHTNP 529 (570)
T ss_dssp TCTTCCEEECCSSC
T ss_pred cccCCcEEEecCCc
Confidence 45555555555554
No 86
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.55 E-value=6.5e-15 Score=109.36 Aligned_cols=141 Identities=18% Similarity=0.170 Sum_probs=89.1
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++++|..+. ++|++|++++|......+..+..+++|+.|+....... +.. +.++++|++|++++|. ..
T Consensus 19 ~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~-~~~l~~L~~L~Ls~N~--l~ 93 (220)
T 2v9t_B 19 RGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-FQGLRSLNSLVLYGNK--IT 93 (220)
T ss_dssp TTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTT-TTTCSSCCEEECCSSC--CC
T ss_pred CCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHH-hhCCcCCCEEECCCCc--CC
Confidence 4566777776554 67888888884334333445777778887775554433 444 7788888888888776 33
Q ss_pred HHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc
Q 037964 79 SVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
...+..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|++...+...+..+++|++|++++|.+
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~-----l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANK-----INCLRVDAFQD-LHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCHhHccCCCCCCEEECCCCC-----CCEeCHHHcCC-CCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 3222345667777777776532 01110 3445 66777777777777776666677777777777776665
No 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.55 E-value=1.3e-14 Score=122.54 Aligned_cols=177 Identities=21% Similarity=0.158 Sum_probs=137.2
Q ss_pred CCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHH
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVL 81 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (202)
.+.+.+++. +..+++|+.|++++ +....+| .++.+++|+.|++...... ... +..+++|+.|++++|. .. .+
T Consensus 30 ~~~i~~~~~-~~~L~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~--l~-~l 102 (605)
T 1m9s_A 30 KKSVTDAVT-QNELNSIDQIIANN-SDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK--IK-DL 102 (605)
T ss_dssp CSCTTSEEC-HHHHTTCCCCBCTT-CCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC--CC-CC
T ss_pred CCCcccccc-hhcCCCCCEEECcC-CCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC--CC-CC
Confidence 344555544 67899999999999 5555565 5888999999986665544 445 8899999999999997 22 23
Q ss_pred HHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEE
Q 037964 82 SKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLAC 160 (202)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 160 (202)
..+..+++|+.|+++++. +. .+ .+.. +++|+.|++++|.+... ..+..+++|+.|++++|.+.+.. +
T Consensus 103 -~~l~~l~~L~~L~Ls~N~-----l~-~l~~l~~-l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~-~- 170 (605)
T 1m9s_A 103 -SSLKDLKKLKSLSLEHNG-----IS-DINGLVH-LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV-P- 170 (605)
T ss_dssp -TTSTTCTTCCEEECTTSC-----CC-CCGGGGG-CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG-G-
T ss_pred -hhhccCCCCCEEEecCCC-----CC-CCccccC-CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch-h-
Confidence 378899999999998642 01 11 4666 89999999999999875 68889999999999988886532 2
Q ss_pred cCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 161 CSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 161 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
...+++|+.|++++|. +..++ ....+++|+.|++++|+
T Consensus 171 -l~~l~~L~~L~Ls~N~-i~~l~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp -GTTCTTCCEEECCSSC-CCBCG-GGTTCTTCSEEECCSEE
T ss_pred -hccCCCCCEEECcCCC-CCCCh-HHccCCCCCEEEccCCc
Confidence 6789999999999997 66653 35678999999998764
No 88
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=8.8e-15 Score=109.29 Aligned_cols=143 Identities=18% Similarity=0.139 Sum_probs=103.9
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
.+++++.+|..+. ++|++|++++|......|..+..+++|+.|+....... +.++++.+++|+.|++++|. ...
T Consensus 27 ~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~--l~~ 102 (229)
T 3e6j_A 27 RSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ--LTV 102 (229)
T ss_dssp TTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCC
T ss_pred cCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc--CCc
Confidence 4567788887554 88999999995556556777888888888886655433 43437888999999999886 444
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCC
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
..+..+..+++|+.|+++++. +. .+ .+.. +++|+.|++++|++...+...+..+++|+.|++++|.+..
T Consensus 103 l~~~~~~~l~~L~~L~Ls~N~-----l~-~lp~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 103 LPSAVFDRLVHLKELFMCCNK-----LT-ELPRGIER-LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-----CC-SCCTTGGG-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred cChhHhCcchhhCeEeccCCc-----cc-ccCccccc-CCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 444556788888888887632 01 11 3456 7888888888888887777778888888888888877653
No 89
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.54 E-value=1.8e-15 Score=123.89 Aligned_cols=173 Identities=18% Similarity=0.206 Sum_probs=98.4
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCc-------------ceecccccCchhHHHcCc-CCccce
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENL-------------NFISALHLSSCTRDILGR-LPNLQS 67 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L-------------~~L~~~~~~~~~~~~l~~-l~~L~~ 67 (202)
.++.++++|.+++++++|++|++++|...+.+|.+++.+.+| ++|+..... ..+ +.. .++|++
T Consensus 19 ~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~--l~~-lp~~~~~L~~ 95 (454)
T 1jl5_A 19 HSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG--LSS-LPELPPHLES 95 (454)
T ss_dssp ---------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC--CSC-CCSCCTTCSE
T ss_pred ccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc--ccc-CCCCcCCCCE
Confidence 567889999999999999999999966678899888888876 444322221 222 222 367899
Q ss_pred eeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEE
Q 037964 68 LKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLK 147 (202)
Q Consensus 68 L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 147 (202)
|++++|. ..+ +|. ..++|+.|+++++. +. .+...+++|+.|++++|++.+.+ .++++++|++|+
T Consensus 96 L~l~~n~--l~~-lp~---~~~~L~~L~l~~n~-----l~---~l~~~~~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~ 159 (454)
T 1jl5_A 96 LVASCNS--LTE-LPE---LPQSLKSLLVDNNN-----LK---ALSDLPPLLEYLGVSNNQLEKLP--ELQNSSFLKIID 159 (454)
T ss_dssp EECCSSC--CSS-CCC---CCTTCCEEECCSSC-----CS---CCCSCCTTCCEEECCSSCCSSCC--CCTTCTTCCEEE
T ss_pred EEccCCc--CCc-ccc---ccCCCcEEECCCCc-----cC---cccCCCCCCCEEECcCCCCCCCc--ccCCCCCCCEEE
Confidence 9998886 332 443 23678888887532 01 23231367888888888777643 577778888888
Q ss_pred eccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeecC
Q 037964 148 LKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPC 200 (202)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c 200 (202)
+++|.+.+ ++ ..+++|++|++++|. +..++ ..+.+++|++|++++|
T Consensus 160 l~~N~l~~--lp---~~~~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 160 VDNNSLKK--LP---DLPPSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp CCSSCCSC--CC---CCCTTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCcCcc--cC---CCcccccEEECcCCc-CCcCc-cccCCCCCCEEECCCC
Confidence 87776653 12 123466667666665 44443 3445566666665554
No 90
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.53 E-value=1.1e-14 Score=111.10 Aligned_cols=155 Identities=20% Similarity=0.177 Sum_probs=117.4
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
..+.+++++ .+..+++|++|++++ +....+| +++.+++|+.|+..+.... ... ++++++|++|++++|. . ..
T Consensus 27 ~~~~i~~~~-~~~~l~~L~~L~l~~-n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~--l-~~ 99 (263)
T 1xeu_A 27 GKQSVTDLV-SQKELSGVQNFNGDN-SNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR--L-KN 99 (263)
T ss_dssp TCSCTTSEE-CHHHHTTCSEEECTT-SCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC--C-SC
T ss_pred cCCCccccc-chhhcCcCcEEECcC-CCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc--c-CC
Confidence 456777887 588999999999999 5555666 6888899999986665544 445 8899999999999986 2 22
Q ss_pred HHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEE
Q 037964 81 LSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLA 159 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 159 (202)
++. +.. ++|+.|+++++. +. .+ .+.. +++|+.|++++|++... ..++.+++|+.|++++|.+.+.
T Consensus 100 l~~-~~~-~~L~~L~L~~N~-----l~-~~~~l~~-l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~--- 165 (263)
T 1xeu_A 100 LNG-IPS-ACLSRLFLDNNE-----LR-DTDSLIH-LKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT--- 165 (263)
T ss_dssp CTT-CCC-SSCCEEECCSSC-----CS-BSGGGTT-CTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC---
T ss_pred cCc-ccc-CcccEEEccCCc-----cC-CChhhcC-cccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch---
Confidence 333 223 889999998642 01 11 4566 88999999999998875 4788899999999998887653
Q ss_pred EcCCCCCcccEEEecccc
Q 037964 160 CCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 160 ~~~~~~~~L~~L~l~~~~ 177 (202)
.....+++|+.|++++|.
T Consensus 166 ~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp TTSTTCCCCCEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCc
Confidence 345678899999999887
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.53 E-value=1.6e-15 Score=121.55 Aligned_cols=88 Identities=19% Similarity=0.057 Sum_probs=49.3
Q ss_pred cccCCCCccEEEeeCCCCC----CCCCccccCCCCcceEEeccCccCCceE---EEcC--CCCCcccEEEeccccCccc-
Q 037964 112 EYQFPQSLTHLSLTNTKLK----DDPMPTLEKLPHLLVLKLKQNSFSRRKL---ACCS--GGFPCLKFLHLKSMLWLDE- 181 (202)
Q Consensus 112 ~~~~l~~L~~L~l~~~~~~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~--~~~~~L~~L~l~~~~~l~~- 181 (202)
+.. +++|+.|++++|.+. ...+..+..+++|++|++++|.+.+... +... +.+++|+.|++++|. +..
T Consensus 212 l~~-~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~ 289 (386)
T 2ca6_A 212 LAY-CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELD 289 (386)
T ss_dssp GGG-CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHH
T ss_pred hhc-CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHH
Confidence 344 666777777777664 2223455666777777777666543211 1111 336777777777776 433
Q ss_pred ----eeeCC-CccccccEEeeecCC
Q 037964 182 ----WTMGT-KATWKLEHLIINPCA 201 (202)
Q Consensus 182 ----~~~~~-~~~~~L~~L~i~~c~ 201 (202)
++... ..+++|++|++++|+
T Consensus 290 g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 290 AVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHHHHHHhcCCCceEEEccCCc
Confidence 33322 335777777777664
No 92
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.52 E-value=1.2e-14 Score=122.58 Aligned_cols=142 Identities=15% Similarity=0.144 Sum_probs=103.3
Q ss_pred CccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHH
Q 037964 4 SFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVL 81 (202)
Q Consensus 4 ~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (202)
-+++++|..+- +++++|++++|......|..+.++++|++|+..+.... ++++|+++++|++|++++|+ ....-
T Consensus 41 ~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~--l~~l~ 116 (635)
T 4g8a_A 41 LNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--IQSLA 116 (635)
T ss_dssp SCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CCEEC
T ss_pred CCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc--CCCCC
Confidence 35777886432 47899999994444444456899999999987666544 44448999999999999987 44444
Q ss_pred HHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCC-CccccCCCCcceEEeccCccCC
Q 037964 82 SKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDP-MPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 82 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
+..|+++++|++|+++++. +.+-. .++. +++|+.|++++|.+.... +..++.+++|++|++++|.+.+
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~-----l~~l~~~~~~~-L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETN-----LASLENFPIGH-LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp GGGGTTCTTCCEEECTTSC-----CCCSTTCCCTT-CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred HHHhcCCCCCCEEECCCCc-----CCCCChhhhhc-CcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 4578899999999997642 11111 4667 889999999999887644 5667789999999998877653
No 93
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.51 E-value=2.4e-14 Score=106.34 Aligned_cols=143 Identities=16% Similarity=0.148 Sum_probs=97.2
Q ss_pred CCCccccccHHHhccccccEEEeCceeecccccc-ccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGK-YCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.++.++++|..+. ..+++|++++|......|. .++.+++|+.|+....... +..+++++++|++|++++|. ..
T Consensus 19 s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~--l~ 94 (220)
T 2v70_A 19 SNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR--LE 94 (220)
T ss_dssp CSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CC
T ss_pred CCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc--cC
Confidence 4667778887553 3567888888444333333 3677888888876555433 33238888888888888887 55
Q ss_pred HHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccC
Q 037964 79 SVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
...+..++.+++|+.|+++++. +.+.. .+.. +++|+.|++++|++...++..+..+++|++|++++|.+.
T Consensus 95 ~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 95 NVQHKMFKGLESLKTLMLRSNR-----ITCVGNDSFIG-LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCGGGGTTCSSCCEEECTTSC-----CCCBCTTSSTT-CTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCHhHhcCCcCCCEEECCCCc-----CCeECHhHcCC-CccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 5555667788888888887532 11111 3555 778888888888888777777788888888888877764
No 94
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.51 E-value=1.8e-14 Score=114.04 Aligned_cols=190 Identities=16% Similarity=0.130 Sum_probs=99.1
Q ss_pred CCCccccccH-HHhccccccEEEeCceeeccccccc-cccCCCcceeccccc-Cch--hHHHcCcCCccceeeEEeecCc
Q 037964 2 PLSFIDHTPE-DIWKMHKLRHLNFGYIKLHAHPGKY-CSALENLNFISALHL-SSC--TRDILGRLPNLQSLKIFEDLSH 76 (202)
Q Consensus 2 ~~~~~~~lp~-~~~~l~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~-~~~--~~~~l~~l~~L~~L~l~~~~~~ 76 (202)
.+|+|+.||. ++.++++|++|++++|.....+|.+ +.++++++++..... ... ++++++.+++|++|++++|.
T Consensus 38 s~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-- 115 (350)
T 4ay9_X 38 VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-- 115 (350)
T ss_dssp ESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC--
T ss_pred cCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc--
Confidence 3455666654 3566666666666663333434432 455555554332221 111 22326666666666666665
Q ss_pred hHHHHHHHhccCCCccEEEeecCcchh--h---c-----------hh-ccc-----ccccCCCCccEEEeeC-CCCCCCC
Q 037964 77 YQSVLSKSLCELRCLDSLKLVNESNML--G---I-----------LQ-IDI-----AEYQFPQSLTHLSLTN-TKLKDDP 133 (202)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~~~--~---~-----------~~-~~~-----~~~~~l~~L~~L~l~~-~~~~~~~ 133 (202)
.....+..+....++..+++....... . + +. +.+ .... ..+++.+++.+ |.+...+
T Consensus 116 l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 116 IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELP 194 (350)
T ss_dssp CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCC
T ss_pred cccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCC
Confidence 222112223333344444443311000 0 0 01 111 1112 34566666653 4556665
Q ss_pred CccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeeec
Q 037964 134 MPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINP 199 (202)
Q Consensus 134 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 199 (202)
..+++++++|+.|++++|.+.. .+.+.|.+|+.|.+.++..++.+|. ...+++|+.+++.+
T Consensus 195 ~~~f~~l~~L~~LdLs~N~l~~----lp~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 195 NDVFHGASGPVILDISRTRIHS----LPSYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp TTTTTTEECCSEEECTTSCCCC----CCSSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred HHHhccCcccchhhcCCCCcCc----cChhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 5667777888888888776642 2335577788888777777776663 45678888877753
No 95
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.50 E-value=3.3e-14 Score=119.92 Aligned_cols=182 Identities=17% Similarity=0.138 Sum_probs=120.7
Q ss_pred cHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhc
Q 037964 10 PEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLC 86 (202)
Q Consensus 10 p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~ 86 (202)
|..+..+.+|+++++.. +.....+..+..+++|+.++....... +..++..+++++.++++.|. .....+..+.
T Consensus 390 ~~~~~~~~~L~~L~~~~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~--l~~~~~~~~~ 466 (635)
T 4g8a_A 390 SQSDFGTISLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--TRVAFNGIFN 466 (635)
T ss_dssp CHHHHSCSCCCEEECCS-CSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC--CEECCTTTTT
T ss_pred ccchhhhhhhhhhhccc-cccccccccccccccccchhhhhccccccccccccccccccccccccccc--cccccccccc
Confidence 44555556666666665 333334444556666666653332211 22226777888888888776 5555566777
Q ss_pred cCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCC
Q 037964 87 ELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGG 164 (202)
Q Consensus 87 ~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 164 (202)
.++.++.|+++++... .+.. .+.. +++|+.|++++|++...++..++++++|++|++++|.+.+-. +.....
T Consensus 467 ~~~~L~~L~Ls~N~~~----~~~~~~~~~~-l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~ 540 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQ----ENFLPDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TFPYKC 540 (635)
T ss_dssp TCTTCCEEECTTCEEG----GGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC-CGGGTT
T ss_pred cchhhhhhhhhhcccc----cccCchhhhh-ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC-hhHHhC
Confidence 7888888888764211 1111 4566 889999999999998888888999999999999988776432 334567
Q ss_pred CCcccEEEeccccCccceee-CCCcc-ccccEEeeecCC
Q 037964 165 FPCLKFLHLKSMLWLDEWTM-GTKAT-WKLEHLIINPCA 201 (202)
Q Consensus 165 ~~~L~~L~l~~~~~l~~~~~-~~~~~-~~L~~L~i~~c~ 201 (202)
+++|+.|++++|. +..++. ....+ ++|+.|+++++|
T Consensus 541 l~~L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 541 LNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CTTCCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCCCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 8899999999988 555433 33445 579999998765
No 96
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.49 E-value=1.2e-14 Score=115.50 Aligned_cols=165 Identities=19% Similarity=0.230 Sum_probs=114.3
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccc-cCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCS-ALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~-~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
.+++++.+|..+. ..+++|++++|......+..+. .+++|+.|+..+.... +.+++.++++|++|++++|. ..
T Consensus 26 ~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~--l~ 101 (361)
T 2xot_A 26 SKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH--LH 101 (361)
T ss_dssp CSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CC
T ss_pred CCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc--CC
Confidence 4677888887554 4588999999444444444455 8899999886665544 33338999999999999997 44
Q ss_pred HHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccc---cCCCCcceEEeccCcc
Q 037964 79 SVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTL---EKLPHLLVLKLKQNSF 153 (202)
Q Consensus 79 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~l~~~~~ 153 (202)
...+..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|++...+...+ ..+++|+.|++++|.+
T Consensus 102 ~~~~~~~~~l~~L~~L~L~~N~-----i~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 102 TLDEFLFSDLQALEVLLLYNNH-----IVVVDRNAFED-MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp EECTTTTTTCTTCCEEECCSSC-----CCEECTTTTTT-CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred cCCHHHhCCCcCCCEEECCCCc-----ccEECHHHhCC-cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 4445578889999999998642 11110 4566 8899999999999988776666 5688999999998877
Q ss_pred CCceEEEcCCCCCc--ccEEEecccc
Q 037964 154 SRRKLACCSGGFPC--LKFLHLKSML 177 (202)
Q Consensus 154 ~~~~~~~~~~~~~~--L~~L~l~~~~ 177 (202)
..-. ......++. ++.|++.+|+
T Consensus 176 ~~l~-~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 176 KKLP-LTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCCC-HHHHHHSCHHHHTTEECCSSC
T ss_pred CccC-HHHhhhccHhhcceEEecCCC
Confidence 5421 111223454 4778888876
No 97
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.47 E-value=8.6e-14 Score=103.28 Aligned_cols=145 Identities=15% Similarity=0.124 Sum_probs=113.9
Q ss_pred cEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEee
Q 037964 20 RHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLV 97 (202)
Q Consensus 20 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 97 (202)
+.++.++ +....+|..+. ++++.|+....... +..++..+++|++|++++|. .....+..+..+++|+.|+++
T Consensus 14 ~~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 14 NIVDCRG-KGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ--ISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp TEEECTT-SCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC--CCEECTTTTTTCSSCCEEECC
T ss_pred CEEEcCC-CCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc--CCCcCHHHhhCCcCCCEEECC
Confidence 5788888 66677887664 68888886655544 33338999999999999997 666668889999999999998
Q ss_pred cCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEec
Q 037964 98 NESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLK 174 (202)
Q Consensus 98 ~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 174 (202)
++. +. .+ .+.. +++|+.|++++|++...++..+.++++|++|++++|.+.+.. +.....+++|+.|+++
T Consensus 89 ~N~-----l~-~l~~~~f~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 89 GNK-----IT-ELPKSLFEG-LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLA 160 (220)
T ss_dssp SSC-----CC-CCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECC
T ss_pred CCc-----CC-ccCHhHccC-CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeC
Confidence 642 11 11 3566 899999999999999988889999999999999988886532 2235568899999999
Q ss_pred ccc
Q 037964 175 SML 177 (202)
Q Consensus 175 ~~~ 177 (202)
+|+
T Consensus 161 ~N~ 163 (220)
T 2v9t_B 161 QNP 163 (220)
T ss_dssp SSC
T ss_pred CCC
Confidence 987
No 98
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.46 E-value=6.2e-16 Score=129.77 Aligned_cols=180 Identities=14% Similarity=0.108 Sum_probs=116.4
Q ss_pred CCCccccccHHHhccccccEEEeCcee-------------eccccccccccCCCcceecccccCc--hh-------HHHc
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIK-------------LHAHPGKYCSALENLNFISALHLSS--CT-------RDIL 59 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~-------------~~~~~p~~l~~l~~L~~L~~~~~~~--~~-------~~~l 59 (202)
+++.++.||.+++++++|+.|++++|. .....|..++.+++|+.|+...... .. .. +
T Consensus 357 s~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~-i 435 (567)
T 1dce_A 357 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENS-V 435 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH-H
T ss_pred ChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhccc-c
Confidence 456677888888888888888887732 2344555567777777765211110 00 01 1
Q ss_pred CcC--CccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCc
Q 037964 60 GRL--PNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMP 135 (202)
Q Consensus 60 ~~l--~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~ 135 (202)
..+ ..|+.|++++|. ...+|. ++.+++|+.|+++++. +. .+ .+.. +++|+.|++++|.+.+.+
T Consensus 436 ~~l~~~~L~~L~Ls~n~---l~~lp~-~~~l~~L~~L~Ls~N~-----l~-~lp~~~~~-l~~L~~L~Ls~N~l~~lp-- 502 (567)
T 1dce_A 436 LKMEYADVRVLHLAHKD---LTVLCH-LEQLLLVTHLDLSHNR-----LR-ALPPALAA-LRCLEVLQASDNALENVD-- 502 (567)
T ss_dssp HHHHHTTCSEEECTTSC---CSSCCC-GGGGTTCCEEECCSSC-----CC-CCCGGGGG-CTTCCEEECCSSCCCCCG--
T ss_pred cccCccCceEEEecCCC---CCCCcC-ccccccCcEeecCccc-----cc-ccchhhhc-CCCCCEEECCCCCCCCCc--
Confidence 111 257888888885 333565 8888888888887642 11 11 4566 788888888888888743
Q ss_pred cccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCC----CccccccEEe
Q 037964 136 TLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGT----KATWKLEHLI 196 (202)
Q Consensus 136 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~~~L~~L~ 196 (202)
.++++++|+.|++++|.+.+...+...+.+++|+.|++++|+ +...+... ..+|+|+.|+
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEE
T ss_pred ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccC
Confidence 778888888888888777653213345668888888888887 55444332 2367787775
No 99
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.46 E-value=7.6e-15 Score=116.71 Aligned_cols=82 Identities=15% Similarity=0.116 Sum_probs=38.0
Q ss_pred CccEEEeeCCCCCCCCCccc----cCC-CCcceEEeccCccCCceEE---EcCCC-CCcccEEEeccccCccceee----
Q 037964 118 SLTHLSLTNTKLKDDPMPTL----EKL-PHLLVLKLKQNSFSRRKLA---CCSGG-FPCLKFLHLKSMLWLDEWTM---- 184 (202)
Q Consensus 118 ~L~~L~l~~~~~~~~~~~~l----~~l-~~L~~L~l~~~~~~~~~~~---~~~~~-~~~L~~L~l~~~~~l~~~~~---- 184 (202)
+|+.|++++|++....+..+ ... ++|++|++++|.+.+.... ..... .++|+.|++++|. +.....
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~ 246 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLK 246 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHH
Confidence 56666666665554443322 233 3666666665555432110 00111 2356666666655 333211
Q ss_pred -CCCccccccEEeeecC
Q 037964 185 -GTKATWKLEHLIINPC 200 (202)
Q Consensus 185 -~~~~~~~L~~L~i~~c 200 (202)
....+++|++|++++|
T Consensus 247 ~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 247 LLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HTTTTTTTCSEEEEEHH
T ss_pred HHHhcCCCccEEEeccC
Confidence 1133455666665554
No 100
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=1.6e-14 Score=114.78 Aligned_cols=192 Identities=17% Similarity=0.167 Sum_probs=128.0
Q ss_pred CCCCccccccHHH-hccccccEEEeCceeeccccc----cccccCC-CcceecccccCch---hHHHcCcC-----Cccc
Q 037964 1 IPLSFIDHTPEDI-WKMHKLRHLNFGYIKLHAHPG----KYCSALE-NLNFISALHLSSC---TRDILGRL-----PNLQ 66 (202)
Q Consensus 1 ~~~~~~~~lp~~~-~~l~~L~~L~l~~~~~~~~~p----~~l~~l~-~L~~L~~~~~~~~---~~~~l~~l-----~~L~ 66 (202)
+..+.++...+++ ...++|++|++++|......+ ..+..++ +|++|+...+... +.. +..+ ++|+
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-l~~~l~~~~~~L~ 83 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE-LVQILAAIPANVT 83 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHH-HHHHHHTSCTTCC
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHH-HHHHHhccCCCcc
Confidence 4567777655555 444569999999954444444 5577788 8999986655432 333 4443 9999
Q ss_pred eeeEEeecCchHH----HHHHHhccC-CCccEEEeecCcchhhchhccc------ccccCCCCccEEEeeCCCCCCCCCc
Q 037964 67 SLKIFEDLSHYQS----VLSKSLCEL-RCLDSLKLVNESNMLGILQIDI------AEYQFPQSLTHLSLTNTKLKDDPMP 135 (202)
Q Consensus 67 ~L~l~~~~~~~~~----~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~ 135 (202)
+|++++|. ..+ .+...+... ++|+.|+++++. +.+.. .+..+.++|+.|++++|.+......
T Consensus 84 ~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-----l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 84 SLNLSGNF--LSYKSSDELVKTLAAIPFTITVLDLGWND-----FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp EEECCSSC--GGGSCHHHHHHHHHTSCTTCCEEECCSSC-----GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred EEECcCCc--CChHHHHHHHHHHHhCCCCccEEECcCCc-----CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 99999997 443 344456666 899999998743 01100 2333136999999999999876544
Q ss_pred cc----cCCC-CcceEEeccCccCCceEE---EcCCCC-CcccEEEeccccCccc-----eeeCCCc-cccccEEeeecC
Q 037964 136 TL----EKLP-HLLVLKLKQNSFSRRKLA---CCSGGF-PCLKFLHLKSMLWLDE-----WTMGTKA-TWKLEHLIINPC 200 (202)
Q Consensus 136 ~l----~~l~-~L~~L~l~~~~~~~~~~~---~~~~~~-~~L~~L~l~~~~~l~~-----~~~~~~~-~~~L~~L~i~~c 200 (202)
.+ ...+ +|++|++++|.+.+.... .....+ ++|+.|++++|. +.. ++..... .++|++|++++|
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 43 4555 999999998887653311 112234 599999999998 654 2222222 358999999987
Q ss_pred C
Q 037964 201 A 201 (202)
Q Consensus 201 ~ 201 (202)
.
T Consensus 236 ~ 236 (362)
T 3goz_A 236 C 236 (362)
T ss_dssp C
T ss_pred C
Confidence 4
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.45 E-value=1.7e-13 Score=114.94 Aligned_cols=167 Identities=16% Similarity=0.135 Sum_probs=108.4
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
.+++++.+|..+. ++|++|++++ |....+| ..+++|+.|+...+... ++. +.+ +|++|++++|. ..+
T Consensus 67 s~n~L~~lp~~l~--~~L~~L~Ls~-N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~--l~~- 134 (571)
T 3cvr_A 67 NRLNLSSLPDNLP--PQITVLEITQ-NALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ--LTM- 134 (571)
T ss_dssp CSSCCSCCCSCCC--TTCSEEECCS-SCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC--CSC-
T ss_pred CCCCCCccCHhHc--CCCCEEECcC-CCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc--CCC-
Confidence 4566666776552 6677777777 4433565 33566777664444333 222 433 77778777775 222
Q ss_pred HHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEE
Q 037964 81 LSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLAC 160 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 160 (202)
+|. .+++|+.|+++++. +.+ + ... +++|+.|++++|++...+. +. ++|+.|++++|.+.. ++.
T Consensus 135 lp~---~l~~L~~L~Ls~N~-----l~~-l-p~~-l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~--lp~ 197 (571)
T 3cvr_A 135 LPE---LPALLEYINADNNQ-----LTM-L-PEL-PTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLES--LPA 197 (571)
T ss_dssp CCC---CCTTCCEEECCSSC-----CSC-C-CCC-CTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSS--CCC
T ss_pred CCC---cCccccEEeCCCCc-----cCc-C-CCc-CCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCc--hhh
Confidence 444 56778888887532 111 1 113 6789999999998887544 54 889999999887753 232
Q ss_pred cCCCCCcc-------cEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 161 CSGGFPCL-------KFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 161 ~~~~~~~L-------~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
.. ++| +.|++++|. +..++.....+++|+.|++++++
T Consensus 198 -~~--~~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 198 -VP--VRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp -CC----------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSSS
T ss_pred -HH--HhhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCCc
Confidence 21 266 999999987 77787777779999999999875
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.44 E-value=1.1e-13 Score=101.69 Aligned_cols=146 Identities=18% Similarity=0.149 Sum_probs=107.5
Q ss_pred cEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEee
Q 037964 20 RHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLV 97 (202)
Q Consensus 20 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 97 (202)
+.++.++ +....+|..+ .++++.|+....... +.++++++++|++|++++|. .....+..+..+++|++|+++
T Consensus 10 ~~v~c~~-~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 10 TTVECYS-QGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK--LQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TEEECCS-SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecC-CCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc--cCccChhhcCCCCCcCEEECC
Confidence 4666776 5566677654 468888886555433 44438899999999999997 444444557889999999998
Q ss_pred cCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEecc
Q 037964 98 NESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKS 175 (202)
Q Consensus 98 ~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 175 (202)
++. +.+.. .+.. +++|+.|++++|++...+...+.++++|++|++++|.+.+.. +.....+++|+.|++++
T Consensus 85 ~n~-----l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 85 TNQ-----LQSLPNGVFDK-LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHD 157 (208)
T ss_dssp SSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCS
T ss_pred CCc-----CCccCHhHhcC-ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecC
Confidence 642 11111 2566 889999999999999887777899999999999988776421 22246689999999999
Q ss_pred cc
Q 037964 176 ML 177 (202)
Q Consensus 176 ~~ 177 (202)
|+
T Consensus 158 N~ 159 (208)
T 2o6s_A 158 NP 159 (208)
T ss_dssp CC
T ss_pred CC
Confidence 86
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=1.8e-13 Score=101.49 Aligned_cols=147 Identities=12% Similarity=0.066 Sum_probs=112.1
Q ss_pred ccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEE
Q 037964 19 LRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLK 95 (202)
Q Consensus 19 L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 95 (202)
-+++++++ +....+|..+. ..++.|+....... +.++++++++|++|++++|. .....+..+..+++|+.|+
T Consensus 13 ~~~l~~s~-n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~--i~~i~~~~~~~l~~L~~L~ 87 (220)
T 2v70_A 13 GTTVDCSN-QKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK--ITDIEEGAFEGASGVNEIL 87 (220)
T ss_dssp TTEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEE
T ss_pred CCEeEeCC-CCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc--CCEECHHHhCCCCCCCEEE
Confidence 35899999 66667887664 35577775554433 33337899999999999997 5555556899999999999
Q ss_pred eecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEe
Q 037964 96 LVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHL 173 (202)
Q Consensus 96 l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 173 (202)
++++. +.+.. .+.. +++|+.|++++|++...++..+.++++|++|++++|.+.+.. +.....+++|+.|++
T Consensus 88 Ls~N~-----l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 88 LTSNR-----LENVQHKMFKG-LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNL 160 (220)
T ss_dssp CCSSC-----CCCCCGGGGTT-CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEEC
T ss_pred CCCCc-----cCccCHhHhcC-CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEe
Confidence 98643 11111 3667 899999999999999988889999999999999988886532 334567899999999
Q ss_pred cccc
Q 037964 174 KSML 177 (202)
Q Consensus 174 ~~~~ 177 (202)
++|+
T Consensus 161 ~~N~ 164 (220)
T 2v70_A 161 LANP 164 (220)
T ss_dssp CSCC
T ss_pred cCcC
Confidence 9987
No 104
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.43 E-value=2.9e-13 Score=107.11 Aligned_cols=189 Identities=15% Similarity=0.102 Sum_probs=123.9
Q ss_pred CCccccccHHHhccccccEEEeCceeecccccc-ccccCCCcceecccccCc--h-hHHHcCcCCcccee-eEEeecCch
Q 037964 3 LSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGK-YCSALENLNFISALHLSS--C-TRDILGRLPNLQSL-KIFEDLSHY 77 (202)
Q Consensus 3 ~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~-~l~~l~~L~~L~~~~~~~--~-~~~~l~~l~~L~~L-~l~~~~~~~ 77 (202)
++++++||..+ .+++++|++++ |....+|. .+.++++|++|+..+... . +.+++.++++++.+ .+..|+ .
T Consensus 18 ~~~Lt~iP~~l--~~~l~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~--l 92 (350)
T 4ay9_X 18 ESKVTEIPSDL--PRNAIELRFVL-TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN--L 92 (350)
T ss_dssp STTCCSCCTTC--CTTCSEEEEES-CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT--C
T ss_pred CCCCCccCcCc--CCCCCEEEccC-CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc--c
Confidence 56789999876 36899999999 66666765 489999999999766653 2 44558999998864 445565 4
Q ss_pred HHHHHHHhccCCCccEEEeecCc--chhh--c----------hhc--cc------ccccCCCCccEEEeeCCCCCCCCCc
Q 037964 78 QSVLSKSLCELRCLDSLKLVNES--NMLG--I----------LQI--DI------AEYQFPQSLTHLSLTNTKLKDDPMP 135 (202)
Q Consensus 78 ~~~~~~~l~~l~~L~~L~l~~~~--~~~~--~----------~~~--~~------~~~~~l~~L~~L~l~~~~~~~~~~~ 135 (202)
....+..+..+++|++|+++++. ...+ + +.+ .+ .+......++.|++++|++...+..
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~ 172 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS 172 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh
Confidence 44456788999999999998731 0000 0 111 11 2222123577788888887765544
Q ss_pred cccCCCCcceEEeccCccCCceEEE-cCCCCCcccEEEeccccCccceeeCCCccccccEEeeecCC
Q 037964 136 TLEKLPHLLVLKLKQNSFSRRKLAC-CSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 136 ~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 201 (202)
.+ ...+|+.+++.+++..... +. ....+++|+.|++++|. ++.++. +.+..|++|.+.+|.
T Consensus 173 ~f-~~~~L~~l~l~~~n~l~~i-~~~~f~~l~~L~~LdLs~N~-l~~lp~--~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 173 AF-NGTQLDELNLSDNNNLEEL-PNDVFHGASGPVILDISRTR-IHSLPS--YGLENLKKLRARSTY 234 (350)
T ss_dssp SS-TTEEEEEEECTTCTTCCCC-CTTTTTTEECCSEEECTTSC-CCCCCS--SSCTTCCEEECTTCT
T ss_pred hc-cccchhHHhhccCCcccCC-CHHHhccCcccchhhcCCCC-cCccCh--hhhccchHhhhccCC
Confidence 43 3457888888654433222 22 23567888889888887 766654 346777777776654
No 105
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.42 E-value=3.1e-13 Score=114.46 Aligned_cols=75 Identities=15% Similarity=0.044 Sum_probs=49.4
Q ss_pred CCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEe
Q 037964 117 QSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLI 196 (202)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 196 (202)
++|+.|++++|++...+ ..+++|+.|++++|.+.. ++. .+++|+.|++++|. +..++.....+++|+.|+
T Consensus 221 ~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~--lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTS--LPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVN 290 (622)
T ss_dssp TTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEE
T ss_pred CCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCc--CCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEE
Confidence 45666666666555432 344667777776665542 221 56778888888886 666766667788888888
Q ss_pred eecCC
Q 037964 197 INPCA 201 (202)
Q Consensus 197 i~~c~ 201 (202)
+++|+
T Consensus 291 L~~N~ 295 (622)
T 3g06_A 291 LEGNP 295 (622)
T ss_dssp CCSCC
T ss_pred ecCCC
Confidence 88775
No 106
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.38 E-value=2.5e-12 Score=105.19 Aligned_cols=155 Identities=20% Similarity=0.223 Sum_probs=79.8
Q ss_pred ccccEEEeCceeeccccccccccCCCcceecccccCchhHHHcCcC-CccceeeEEeecCchHHHHHHHhccCCCccEEE
Q 037964 17 HKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSCTRDILGRL-PNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLK 95 (202)
Q Consensus 17 ~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~ 95 (202)
++|++|++++ +....+|.. +++|+.|+..... ..+ +..+ ++|++|++++|. .. .+| .++.+++|++|+
T Consensus 91 ~~L~~L~l~~-n~l~~lp~~---~~~L~~L~l~~n~--l~~-l~~~~~~L~~L~L~~n~--l~-~lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 91 PHLESLVASC-NSLTELPEL---PQSLKSLLVDNNN--LKA-LSDLPPLLEYLGVSNNQ--LE-KLP-ELQNSSFLKIID 159 (454)
T ss_dssp TTCSEEECCS-SCCSSCCCC---CTTCCEEECCSSC--CSC-CCSCCTTCCEEECCSSC--CS-SCC-CCTTCTTCCEEE
T ss_pred CCCCEEEccC-CcCCccccc---cCCCcEEECCCCc--cCc-ccCCCCCCCEEECcCCC--CC-CCc-ccCCCCCCCEEE
Confidence 4555566655 332224432 2455555432221 222 3333 578888888876 33 355 578888888888
Q ss_pred eecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEecc
Q 037964 96 LVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKS 175 (202)
Q Consensus 96 l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 175 (202)
++++. +. .+...+.+|+.|++++|.+...+ .++++++|++|++++|.+.+ ++ ...++|+.|++++
T Consensus 160 l~~N~-----l~---~lp~~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~--l~---~~~~~L~~L~l~~ 224 (454)
T 1jl5_A 160 VDNNS-----LK---KLPDLPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKK--LP---DLPLSLESIVAGN 224 (454)
T ss_dssp CCSSC-----CS---CCCCCCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS--CC---CCCTTCCEEECCS
T ss_pred CCCCc-----Cc---ccCCCcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCc--CC---CCcCcccEEECcC
Confidence 87532 01 11111456777777777666632 46666777777776665543 11 1123455555555
Q ss_pred ccCccceeeCCCccccccEEeeec
Q 037964 176 MLWLDEWTMGTKATWKLEHLIINP 199 (202)
Q Consensus 176 ~~~l~~~~~~~~~~~~L~~L~i~~ 199 (202)
|. +..++ ..+.+++|++|++++
T Consensus 225 n~-l~~lp-~~~~l~~L~~L~l~~ 246 (454)
T 1jl5_A 225 NI-LEELP-ELQNLPFLTTIYADN 246 (454)
T ss_dssp SC-CSSCC-CCTTCTTCCEEECCS
T ss_pred Cc-CCccc-ccCCCCCCCEEECCC
Confidence 43 33333 123344444444443
No 107
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=1.6e-13 Score=97.34 Aligned_cols=131 Identities=20% Similarity=0.084 Sum_probs=78.5
Q ss_pred CCccceeeEEeecCchH-HHHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCC
Q 037964 62 LPNLQSLKIFEDLSHYQ-SVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKL 140 (202)
Q Consensus 62 l~~L~~L~l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l 140 (202)
.++|+.|++++|. .. +.+|..+..+++|+.|+++++. +.+.-.+.. +++|+.|++++|.+....+..+..+
T Consensus 23 ~~~L~~L~l~~n~--l~~~~i~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l 94 (168)
T 2ell_A 23 PAAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLINVG-----LISVSNLPK-LPKLKKLELSENRIFGGLDMLAEKL 94 (168)
T ss_dssp TTSCSEEECCSCB--CBTTBCSSCCGGGGGCCEEEEESSC-----CCCCSSCCC-CSSCCEEEEESCCCCSCCCHHHHHC
T ss_pred cccCCEEECCCCC--CChhhHHHHHHhCCCCCEEeCcCCC-----CCChhhhcc-CCCCCEEECcCCcCchHHHHHHhhC
Confidence 3567777777665 32 3455556666777777776532 000003455 6777777777777776545555567
Q ss_pred CCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceee----CCCccccccEEeeecCC
Q 037964 141 PHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTM----GTKATWKLEHLIINPCA 201 (202)
Q Consensus 141 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~~~~L~~L~i~~c~ 201 (202)
++|++|++++|.+.+.........+++|+.|++++|. +..++. ....+|+|++|++.+|.
T Consensus 95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 7777777777766542111234557777777777776 544433 33456777777777664
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=1.3e-12 Score=99.42 Aligned_cols=138 Identities=17% Similarity=0.132 Sum_probs=108.6
Q ss_pred CCCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHH
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
+.++.++.+| ++..+++|++|++++ |....++. ++.+++|+.|+....... .+. +.. ++|+.|++++|. ..+
T Consensus 48 l~~n~i~~l~-~l~~l~~L~~L~L~~-N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~-~~~-~~L~~L~L~~N~--l~~ 120 (263)
T 1xeu_A 48 GDNSNIQSLA-GMQFFTNLKELHLSH-NQISDLSP-LKDLTKLEELSVNRNRLKNLNG-IPS-ACLSRLFLDNNE--LRD 120 (263)
T ss_dssp CTTSCCCCCT-TGGGCTTCCEEECCS-SCCCCCGG-GTTCSSCCEEECCSSCCSCCTT-CCC-SSCCEEECCSSC--CSB
T ss_pred CcCCCcccch-HHhhCCCCCEEECCC-CccCCChh-hccCCCCCEEECCCCccCCcCc-ccc-CcccEEEccCCc--cCC
Confidence 4678899998 799999999999999 55555555 888999999986665544 444 545 999999999997 332
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCc
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRR 156 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 156 (202)
+ ..++.+++|+.|+++++. +. .+ .+.. +++|+.|++++|++... ..+..+++|+.|++++|.+...
T Consensus 121 -~-~~l~~l~~L~~L~Ls~N~-----i~-~~~~l~~-l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 121 -T-DSLIHLKNLEILSIRNNK-----LK-SIVMLGF-LSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -S-GGGTTCTTCCEEECTTSC-----CC-BCGGGGG-CTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -C-hhhcCcccccEEECCCCc-----CC-CChHHcc-CCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 3 368999999999998642 01 11 4667 89999999999999876 6788999999999998887553
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=2.3e-13 Score=108.13 Aligned_cols=144 Identities=18% Similarity=0.228 Sum_probs=112.3
Q ss_pred CCCCccccccHH-Hh-ccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCc
Q 037964 1 IPLSFIDHTPED-IW-KMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSH 76 (202)
Q Consensus 1 ~~~~~~~~lp~~-~~-~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~ 76 (202)
+++++++.+|.. +. ++++|++|++++|......+..+..+++|+.|+....... +..++..+++|+.|++++|.
T Consensus 46 Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-- 123 (361)
T 2xot_A 46 LSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH-- 123 (361)
T ss_dssp CCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--
T ss_pred CCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCc--
Confidence 467889999876 44 8999999999994444444556899999999986665544 44338999999999999998
Q ss_pred hHHHHHHHhccCCCccEEEeecCcchhhchhccc---cc---ccCCCCccEEEeeCCCCCCCCCccccCCCC--cceEEe
Q 037964 77 YQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI---AE---YQFPQSLTHLSLTNTKLKDDPMPTLEKLPH--LLVLKL 148 (202)
Q Consensus 77 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~---~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~--L~~L~l 148 (202)
.....+..+..+++|+.|+++++. +. .+ .+ .. +++|+.|++++|++...+...+..++. ++.|++
T Consensus 124 i~~~~~~~~~~l~~L~~L~L~~N~-----l~-~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 124 IVVVDRNAFEDMAQLQKLYLSQNQ-----IS-RFPVELIKDGNK-LPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSC-----CC-SCCGGGTC-----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEEC
T ss_pred ccEECHHHhCCcccCCEEECCCCc-----CC-eeCHHHhcCccc-CCcCCEEECCCCCCCccCHHHhhhccHhhcceEEe
Confidence 555567889999999999998642 01 11 12 45 899999999999999988788888887 489999
Q ss_pred ccCcc
Q 037964 149 KQNSF 153 (202)
Q Consensus 149 ~~~~~ 153 (202)
++|.+
T Consensus 197 ~~N~~ 201 (361)
T 2xot_A 197 HNNPL 201 (361)
T ss_dssp CSSCE
T ss_pred cCCCc
Confidence 98775
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.37 E-value=6.6e-13 Score=99.05 Aligned_cols=146 Identities=18% Similarity=0.086 Sum_probs=107.3
Q ss_pred cccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEE
Q 037964 18 KLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSL 94 (202)
Q Consensus 18 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L 94 (202)
.-+.++.++ +....+|.++. ++|+.|+....... +.. ++++++|++|++++|. .....+..+..+++|+.|
T Consensus 20 s~~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~L~~N~--l~~i~~~~~~~l~~L~~L 93 (229)
T 3e6j_A 20 SGTTVDCRS-KRHASVPAGIP--TNAQILYLHDNQITKLEPGV-FDSLINLKELYLGSNQ--LGALPVGVFDSLTQLTVL 93 (229)
T ss_dssp ETTEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEE
T ss_pred eCCEeEccC-CCcCccCCCCC--CCCCEEEcCCCccCccCHHH-hhCccCCcEEECCCCC--CCCcChhhcccCCCcCEE
Confidence 356788888 66778887664 88898886655433 555 8999999999999997 433333557889999999
Q ss_pred EeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEE
Q 037964 95 KLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLH 172 (202)
Q Consensus 95 ~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 172 (202)
+++++. +.+.. .+.. +++|+.|++++|++... +..+..+++|++|++++|.+..-. +.....+++|+.|+
T Consensus 94 ~Ls~N~-----l~~l~~~~~~~-l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~ 165 (229)
T 3e6j_A 94 DLGTNQ-----LTVLPSAVFDR-LVHLKELFMCCNKLTEL-PRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAY 165 (229)
T ss_dssp ECCSSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEE
T ss_pred ECCCCc-----CCccChhHhCc-chhhCeEeccCCccccc-CcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEE
Confidence 998642 11111 3466 88999999999998865 466788999999999988776421 12345688999999
Q ss_pred ecccc
Q 037964 173 LKSML 177 (202)
Q Consensus 173 l~~~~ 177 (202)
+.+|+
T Consensus 166 l~~N~ 170 (229)
T 3e6j_A 166 LFGNP 170 (229)
T ss_dssp CTTSC
T ss_pred eeCCC
Confidence 99987
No 111
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.36 E-value=6.6e-14 Score=114.22 Aligned_cols=84 Identities=15% Similarity=0.065 Sum_probs=45.6
Q ss_pred CCccEEEeeCCCCCCCC----CccccCCCCcceEEeccCccCCceE----EEcCCCCCcccEEEeccccCccc-----ee
Q 037964 117 QSLTHLSLTNTKLKDDP----MPTLEKLPHLLVLKLKQNSFSRRKL----ACCSGGFPCLKFLHLKSMLWLDE-----WT 183 (202)
Q Consensus 117 ~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~l~~-----~~ 183 (202)
++|+.|++++|.+.... +..+..+++|++|++++|.+.+... +.....+++|+.|++++|. +.. ++
T Consensus 199 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~ 277 (461)
T 1z7x_W 199 CQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLC 277 (461)
T ss_dssp CCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH
T ss_pred CCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHH
Confidence 46666666666655532 3344456667777776665433211 1112246677777777765 443 22
Q ss_pred eCCCccccccEEeeecCC
Q 037964 184 MGTKATWKLEHLIINPCA 201 (202)
Q Consensus 184 ~~~~~~~~L~~L~i~~c~ 201 (202)
.....+++|++|++++|.
T Consensus 278 ~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 278 RVLRAKESLKELSLAGNE 295 (461)
T ss_dssp HHHHHCTTCCEEECTTCC
T ss_pred HHHhhCCCcceEECCCCC
Confidence 222346677777777653
No 112
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=4e-13 Score=93.43 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=91.0
Q ss_pred ccccccEEEeCceeec-cccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCcc
Q 037964 15 KMHKLRHLNFGYIKLH-AHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLD 92 (202)
Q Consensus 15 ~l~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 92 (202)
..++|++|++++|... ..+|..++.+++|+.|+....... ... ++++++|++|++++|. ..+.+|..++.+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-LPKLNKLKKLELSDNR--VSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTT-CCCCTTCCEEECCSSC--CCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchh-hhcCCCCCEEECCCCc--ccchHHHHhhhCCCCC
Confidence 4578999999995554 478888889999999986655444 645 8899999999999997 5555777777888888
Q ss_pred EEEeecCcchhhchhcc--c-ccccCCCCccEEEeeCCCCCCCCC---ccccCCCCcceEEec
Q 037964 93 SLKLVNESNMLGILQID--I-AEYQFPQSLTHLSLTNTKLKDDPM---PTLEKLPHLLVLKLK 149 (202)
Q Consensus 93 ~L~l~~~~~~~~~~~~~--~-~~~~~l~~L~~L~l~~~~~~~~~~---~~l~~l~~L~~L~l~ 149 (202)
.|+++++. +.+. . .+.. +++|+.|++++|++...+. ..+..+++|++|+++
T Consensus 92 ~L~ls~N~-----i~~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNK-----IKDLSTIEPLKK-LENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSC-----CCSHHHHGGGGG-CTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCc-----CCChHHHHHHhh-CCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88887632 0110 0 3455 6777777777777776554 456677777777664
No 113
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.35 E-value=5.6e-13 Score=94.54 Aligned_cols=81 Identities=22% Similarity=0.273 Sum_probs=53.1
Q ss_pred ccccccEEEeCceeec-cccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCcc
Q 037964 15 KMHKLRHLNFGYIKLH-AHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLD 92 (202)
Q Consensus 15 ~l~~L~~L~l~~~~~~-~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~ 92 (202)
..++|++|++++|... ..+|..+..+++|+.|+...+... ... ++.+++|++|++++|. ....+|..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKKLELSENR--IFGGLDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSS-CCCCSSCCEEEEESCC--CCSCCCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhh-hccCCCCCEEECcCCc--CchHHHHHHhhCCCCC
Confidence 4578999999995443 477777777888888875555433 544 7778888888888876 3333455455555555
Q ss_pred EEEeec
Q 037964 93 SLKLVN 98 (202)
Q Consensus 93 ~L~l~~ 98 (202)
.|++++
T Consensus 99 ~L~Ls~ 104 (168)
T 2ell_A 99 HLNLSG 104 (168)
T ss_dssp EEECBS
T ss_pred EEeccC
Confidence 555543
No 114
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.35 E-value=4.4e-14 Score=115.29 Aligned_cols=86 Identities=16% Similarity=0.084 Sum_probs=46.3
Q ss_pred HhccccccEEEeCceeecc----ccccccccCCCcceecccccCch---hHHHcCcCC----ccceeeEEeecCch--HH
Q 037964 13 IWKMHKLRHLNFGYIKLHA----HPGKYCSALENLNFISALHLSSC---TRDILGRLP----NLQSLKIFEDLSHY--QS 79 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~----~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~----~L~~L~l~~~~~~~--~~ 79 (202)
+..+++|++|++++|.... .++..+..+++|++|+....... +......++ +|++|++++|.... ..
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~ 103 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 103 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence 5666777777777633221 33444555666666664443322 222122233 57777776665111 13
Q ss_pred HHHHHhccCCCccEEEeec
Q 037964 80 VLSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~ 98 (202)
.++..+..+++|+.|++++
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~ 122 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSD 122 (461)
T ss_dssp HHHHHTTSCTTCCEEECCS
T ss_pred HHHHHHccCCceeEEECCC
Confidence 5666666677777777665
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=2.3e-14 Score=120.26 Aligned_cols=171 Identities=17% Similarity=0.147 Sum_probs=128.7
Q ss_pred hccccccEEEeCceeeccccccccccCCCcceeccccc---------------Cch-hHHHcCcCCccceee-EEeecCc
Q 037964 14 WKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHL---------------SSC-TRDILGRLPNLQSLK-IFEDLSH 76 (202)
Q Consensus 14 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~---------------~~~-~~~~l~~l~~L~~L~-l~~~~~~ 76 (202)
+..++|+.|++++ +....+|.+++.+++|+.|+..+. .+. +.. ++++++|+.|+ ++.+.
T Consensus 346 ~~~~~L~~L~Ls~-n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~-l~~l~~L~~L~~l~~n~-- 421 (567)
T 1dce_A 346 ATDEQLFRCELSV-EKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKET-LQYFSTLKAVDPMRAAY-- 421 (567)
T ss_dssp STTTTSSSCCCCH-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHH-HHHHHHHHHHCGGGHHH--
T ss_pred ccCccceeccCCh-hhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHH-HHHHHhcccCcchhhcc--
Confidence 5688999999999 676789999999999998873221 111 444 88899999988 55553
Q ss_pred hHHHHHH------HhccC--CCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEE
Q 037964 77 YQSVLSK------SLCEL--RCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLK 147 (202)
Q Consensus 77 ~~~~~~~------~l~~l--~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 147 (202)
...++. .+..+ ..|+.|+++++. +.+ + .+.. +++|+.|++++|.+... +..++++++|+.|+
T Consensus 422 -~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-----l~~-lp~~~~-l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~ 492 (567)
T 1dce_A 422 -LDDLRSKFLLENSVLKMEYADVRVLHLAHKD-----LTV-LCHLEQ-LLLVTHLDLSHNRLRAL-PPALAALRCLEVLQ 492 (567)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTTCSEEECTTSC-----CSS-CCCGGG-GTTCCEEECCSSCCCCC-CGGGGGCTTCCEEE
T ss_pred -cchhhhhhhhcccccccCccCceEEEecCCC-----CCC-CcCccc-cccCcEeecCccccccc-chhhhcCCCCCEEE
Confidence 222222 12221 368899998642 111 2 4566 88999999999999965 57899999999999
Q ss_pred eccCccCCceEEEcCCCCCcccEEEeccccCccce--eeCCCccccccEEeeecCC
Q 037964 148 LKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEW--TMGTKATWKLEHLIINPCA 201 (202)
Q Consensus 148 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~~L~~L~i~~c~ 201 (202)
+++|.+.+ ++ ..+.+++|+.|++++|. +..+ +...+.+++|+.|++++++
T Consensus 493 Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 493 ASDNALEN--VD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp CCSSCCCC--CG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCCCCCCC--Cc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence 99998875 45 67789999999999998 6666 5667889999999999874
No 116
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.30 E-value=1.9e-12 Score=108.76 Aligned_cols=193 Identities=17% Similarity=0.100 Sum_probs=93.7
Q ss_pred ccccHHHhccccccEEEeCceeecc-ccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEe----------e
Q 037964 7 DHTPEDIWKMHKLRHLNFGYIKLHA-HPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFE----------D 73 (202)
Q Consensus 7 ~~lp~~~~~l~~L~~L~l~~~~~~~-~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~----------~ 73 (202)
..+|..+..+++|++|++++|.... .++..+..+++|++|+..+.-.. +......+++|++|++.. +
T Consensus 283 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~ 362 (592)
T 3ogk_B 283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE 362 (592)
T ss_dssp TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence 4456666677778888887743221 12222456667776664321111 333234566666666662 2
Q ss_pred cCchHHHHHHHhccCCCccEEEeecCc---chhh-c-----------hh-----ccc-----------ccccCCCCccEE
Q 037964 74 LSHYQSVLSKSLCELRCLDSLKLVNES---NMLG-I-----------LQ-----IDI-----------AEYQFPQSLTHL 122 (202)
Q Consensus 74 ~~~~~~~~~~~l~~l~~L~~L~l~~~~---~~~~-~-----------~~-----~~~-----------~~~~~l~~L~~L 122 (202)
.......+......+++|++|++..+. ..+. + +. +.+ .+.. +++|+.|
T Consensus 363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~-~~~L~~L 441 (592)
T 3ogk_B 363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG-CKKLRRF 441 (592)
T ss_dssp CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH-CTTCCEE
T ss_pred CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh-CCCCCEE
Confidence 111222333334445566666553211 0000 0 00 000 1223 4455555
Q ss_pred EeeCCC--CCCCCCcccc-CCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccc--eeeCCCccccccEEee
Q 037964 123 SLTNTK--LKDDPMPTLE-KLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDE--WTMGTKATWKLEHLII 197 (202)
Q Consensus 123 ~l~~~~--~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~i 197 (202)
++++|. +....+..++ .+++|++|++++|.+.+..++.....+++|+.|++++|. +.. ++.....+++|++|++
T Consensus 442 ~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 442 AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp EEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEE
T ss_pred EEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeEC
Confidence 554432 3322222333 356666777766655443333334556777777777777 432 1222235677888888
Q ss_pred ecCC
Q 037964 198 NPCA 201 (202)
Q Consensus 198 ~~c~ 201 (202)
++|.
T Consensus 521 s~n~ 524 (592)
T 3ogk_B 521 QGYR 524 (592)
T ss_dssp ESCB
T ss_pred cCCc
Confidence 7774
No 117
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.30 E-value=5e-12 Score=107.06 Aligned_cols=64 Identities=14% Similarity=0.006 Sum_probs=34.5
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeec
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDL 74 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~ 74 (202)
.+++++.+|..+. ++|++|++++ |....+|. .+++|++|+...+... ++. .+++|++|++++|.
T Consensus 48 s~n~L~~lp~~l~--~~L~~L~L~~-N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 48 GESGLTTLPDCLP--AHITTLVIPD-NNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CSSCCSCCCSCCC--TTCSEEEECS-CCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred cCCCcCccChhhC--CCCcEEEecC-CCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 4566666766554 6777777777 34345554 3556666654433322 111 34556666665554
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.29 E-value=1.8e-13 Score=95.27 Aligned_cols=130 Identities=18% Similarity=0.061 Sum_probs=94.4
Q ss_pred cCCccceeeEEeecCchH-HHHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccC
Q 037964 61 RLPNLQSLKIFEDLSHYQ-SVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEK 139 (202)
Q Consensus 61 ~l~~L~~L~l~~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 139 (202)
..++|+.|++++|. .. +.+|..+..+++|+.|+++++. +.+.-.+.. +++|+.|++++|.+....+..+++
T Consensus 15 ~~~~l~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 15 TPSDVKELVLDNSR--SNEGKLEGLTDEFEELEFLSTINVG-----LTSIANLPK-LNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp CGGGCSEEECTTCB--CBTTBCCSCCTTCTTCCEEECTTSC-----CCCCTTCCC-CTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CCccCeEEEccCCc--CChhHHHHHHhhcCCCcEEECcCCC-----CCCchhhhc-CCCCCEEECCCCcccchHHHHhhh
Confidence 34678888888886 43 4667777888888888887532 010004566 889999999999998866667778
Q ss_pred CCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceee----CCCccccccEEeeec
Q 037964 140 LPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTM----GTKATWKLEHLIINP 199 (202)
Q Consensus 140 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~----~~~~~~~L~~L~i~~ 199 (202)
+++|++|++++|.+.+...+.....+++|+.|++++|. +..++. ....+++|+.|++++
T Consensus 87 l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 87 CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999998887652212345678999999999997 655543 345688999988763
No 119
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.28 E-value=2.6e-12 Score=107.86 Aligned_cols=86 Identities=9% Similarity=0.112 Sum_probs=40.3
Q ss_pred CCCccEEEeeCCCCCCCCCccccC-CCCcceEEec----cCccCCc----eEEEcCCCCCcccEEEeccccC-ccce--e
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEK-LPHLLVLKLK----QNSFSRR----KLACCSGGFPCLKFLHLKSMLW-LDEW--T 183 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~----~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~-l~~~--~ 183 (202)
+++|+.|++..+.+....+..++. +++|++|+++ .+.+.+. .++....++++|+.|+++.|.. +... .
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence 455566666555555443444442 5666666664 2233221 1111122356666666655431 1110 0
Q ss_pred eCCCccccccEEeeecCC
Q 037964 184 MGTKATWKLEHLIINPCA 201 (202)
Q Consensus 184 ~~~~~~~~L~~L~i~~c~ 201 (202)
.-...+++|++|++++|.
T Consensus 457 ~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHHHSCTTCCEEEECSCC
T ss_pred HHHHhCccceEeeccCCC
Confidence 011236677777777663
No 120
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=3.4e-12 Score=92.65 Aligned_cols=125 Identities=14% Similarity=0.133 Sum_probs=74.3
Q ss_pred cEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEe
Q 037964 20 RHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKL 96 (202)
Q Consensus 20 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 96 (202)
+++++++ +....+|..+.. ++++|+....... +..+++.+++|++|++++|. ..+..|..++.+++|+.|++
T Consensus 11 ~~l~~s~-~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ--LTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTT-SCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC--CCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCC-CCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC--CCCcCHhHcCCcccCCEEEC
Confidence 4555555 344455544432 5555543333222 21125566666666666665 44444556666666666666
Q ss_pred ecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCC
Q 037964 97 VNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 97 ~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
+++. +.+.. .+.. +++|+.|++++|++....+..+..+++|++|++++|.+..
T Consensus 86 s~N~-----l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 86 GENK-----IKEISNKMFLG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CSCC-----CCEECSSSSTT-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CCCc-----CCccCHHHhcC-CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 5422 11111 3556 7888888888888888777788888888888888887754
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=3e-13 Score=116.60 Aligned_cols=107 Identities=13% Similarity=0.055 Sum_probs=47.4
Q ss_pred ccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc--c
Q 037964 36 YCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--A 111 (202)
Q Consensus 36 ~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~ 111 (202)
.+..+.+|+.|++..+... +.. +.++++|++|+|++|. .. .+|..++++++|+.|+++++. +. .+ .
T Consensus 219 ~~~~l~~L~~L~Ls~n~l~~l~~~-~~~l~~L~~L~Ls~N~--l~-~lp~~~~~l~~L~~L~Ls~N~-----l~-~lp~~ 288 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNLQIFNISAN-IFKYDFLTRLYLNGNS--LT-ELPAEIKNLSNLRVLDLSHNR-----LT-SLPAE 288 (727)
T ss_dssp ---CCCCCCEEECTTSCCSCCCGG-GGGCCSCSCCBCTTSC--CS-CCCGGGGGGTTCCEEECTTSC-----CS-SCCSS
T ss_pred hhccCCCCcEEECCCCCCCCCChh-hcCCCCCCEEEeeCCc--Cc-ccChhhhCCCCCCEEeCcCCc-----CC-ccChh
Confidence 3444445555443333222 333 4445555555555553 22 444455555555555554321 00 11 2
Q ss_pred cccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccC
Q 037964 112 EYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 112 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
+.. +++|+.|+|++|.+... +..++++++|+.|++++|.+.
T Consensus 289 ~~~-l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 289 LGS-CFQLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp GGG-GTTCSEEECCSSCCCCC-CSSTTSCTTCCCEECTTSCCC
T ss_pred hcC-CCCCCEEECCCCCCCcc-ChhhhcCCCccEEeCCCCccC
Confidence 334 45555555555555433 233555555555555555543
No 122
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.20 E-value=2.6e-12 Score=107.90 Aligned_cols=84 Identities=15% Similarity=0.216 Sum_probs=53.8
Q ss_pred CCCccEEEeeCCCCCCCCCccccC-CCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCcccee--eCCCccccc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEK-LPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWT--MGTKATWKL 192 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~L 192 (202)
+++|+.|++++ .+....+..++. +++|++|++++|.+.+..+......+++|+.|++++|.. .... .....+++|
T Consensus 431 ~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L 508 (594)
T 2p1m_B 431 CKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETM 508 (594)
T ss_dssp CTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGS
T ss_pred CCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCC
Confidence 56666676655 444433444443 777888888877765443322224578899999999884 3321 123457899
Q ss_pred cEEeeecCC
Q 037964 193 EHLIINPCA 201 (202)
Q Consensus 193 ~~L~i~~c~ 201 (202)
++|++++|+
T Consensus 509 ~~L~l~~~~ 517 (594)
T 2p1m_B 509 RSLWMSSCS 517 (594)
T ss_dssp SEEEEESSC
T ss_pred CEEeeeCCC
Confidence 999999986
No 123
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.20 E-value=2.8e-11 Score=87.88 Aligned_cols=123 Identities=15% Similarity=0.086 Sum_probs=69.4
Q ss_pred cEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEee
Q 037964 20 RHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLV 97 (202)
Q Consensus 20 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 97 (202)
+++++++ +....+|.++. +++++|+....... +.. +.++++|+.|++++|. .....+..+..+++|+.|+++
T Consensus 13 ~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls 86 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPKGIP--RDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNR--ISTLSNQSFSNMTQLLTLILS 86 (193)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEcCC-CCCCcCCCCCC--CCCCEEECCCCcCchhHHH-hhcccCCCEEECCCCc--CCEeCHhHccCCCCCCEEECC
Confidence 3455555 44444554332 35555553333322 333 5666666666666665 333333445555666666655
Q ss_pred cCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccC
Q 037964 98 NESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 98 ~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 154 (202)
++. +.+.. .+.. +++|+.|++++|.+...+...+..+++|++|++++|.+.
T Consensus 87 ~N~-----l~~i~~~~f~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 87 YNR-----LRCIPPRTFDG-LKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SSC-----CCBCCTTTTTT-CTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCc-----cCEeCHHHhCC-CCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 421 01000 2455 677888888888887776667778888888888877653
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.18 E-value=1.3e-11 Score=89.58 Aligned_cols=121 Identities=16% Similarity=0.124 Sum_probs=93.2
Q ss_pred CCCCccccccHHHhccccccEEEeCceeecccccc--ccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecC
Q 037964 1 IPLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGK--YCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLS 75 (202)
Q Consensus 1 ~~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~--~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~ 75 (202)
++++.++++|..+.. +|++|++++ +....++. .++.+++|++|+....... +.. ++++++|++|++++|.
T Consensus 15 ~s~~~l~~ip~~~~~--~l~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~- 89 (192)
T 1w8a_A 15 CTGRGLKEIPRDIPL--HTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA-FEGASHIQELQLGENK- 89 (192)
T ss_dssp CTTSCCSSCCSCCCT--TCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEEECCSCC-
T ss_pred cCCCCcCcCccCCCC--CCCEEECCC-CcCCccCCccccccCCCCCEEECCCCCCCCcCHhH-cCCcccCCEEECCCCc-
Confidence 357889999986654 999999999 44444443 3889999999986665544 555 9999999999999998
Q ss_pred chHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCC
Q 037964 76 HYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDP 133 (202)
Q Consensus 76 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~ 133 (202)
..+..+..++.+++|+.|+++++. +.+.. .+.. +++|+.|++++|++..+.
T Consensus 90 -l~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~-l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 90 -IKEISNKMFLGLHQLKTLNLYDNQ-----ISCVMPGSFEH-LNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp -CCEECSSSSTTCTTCCEEECCSSC-----CCEECTTSSTT-CTTCCEEECTTCCBCCSG
T ss_pred -CCccCHHHhcCCCCCCEEECCCCc-----CCeeCHHHhhc-CCCCCEEEeCCCCccCcC
Confidence 556566678899999999998743 12222 4666 889999999999988653
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.15 E-value=5.8e-12 Score=90.06 Aligned_cols=82 Identities=17% Similarity=0.095 Sum_probs=41.0
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEE--cCCCCCcccEEEeccccCccceeeC----CCcc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLAC--CSGGFPCLKFLHLKSMLWLDEWTMG----TKAT 189 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~l~~~~~~----~~~~ 189 (202)
+++|+.|++++|.+...++..+..+++|++|++++|.+.. ++. ....+++|+.|++++|+ +..++.. ...+
T Consensus 63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l 139 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKV 139 (176)
T ss_dssp CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC--GGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHC
T ss_pred CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc--chhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHC
Confidence 5555555665555555444444555566666665555422 111 23345556666666555 3333221 2345
Q ss_pred ccccEEeeecC
Q 037964 190 WKLEHLIINPC 200 (202)
Q Consensus 190 ~~L~~L~i~~c 200 (202)
|+|+.|+++++
T Consensus 140 ~~L~~Ld~~~n 150 (176)
T 1a9n_A 140 PQVRVLDFQKV 150 (176)
T ss_dssp TTCSEETTEEC
T ss_pred CccceeCCCcC
Confidence 55666655544
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.15 E-value=8.9e-11 Score=83.83 Aligned_cols=125 Identities=18% Similarity=0.129 Sum_probs=65.4
Q ss_pred cEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEee
Q 037964 20 RHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLV 97 (202)
Q Consensus 20 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~ 97 (202)
+.+++++ +....+|..+ .+++++|+....... +.++++.+++|++|++++|. .....+..++.+++|+.|+++
T Consensus 10 ~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 10 TEIRCNS-KGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ--IQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TEEECCS-SCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEecC-CCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc--ceEeChhHccCCCccCEEECC
Confidence 4455555 3333444322 245555543332221 22225566666666666664 222222334555555555554
Q ss_pred cCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCC
Q 037964 98 NESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 98 ~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
++. +.+.. .+.. +++|+.|++++|.+...+...+..+++|++|++++|.+.+
T Consensus 85 ~N~-----l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 85 ENK-----LQSLPNGVFDK-LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SSC-----CCCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCC-----ccccCHHHhhC-CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 321 01100 2345 6777777777777777666666777888888887776643
No 127
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.14 E-value=1.1e-10 Score=97.95 Aligned_cols=157 Identities=15% Similarity=0.152 Sum_probs=113.4
Q ss_pred HHhccc-----cccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHh
Q 037964 12 DIWKMH-----KLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSL 85 (202)
Q Consensus 12 ~~~~l~-----~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l 85 (202)
++..++ +|++|++++ +....+|..+. ++|+.|+..++... ++ +.+++|+.|++++|. ..+ +|. +
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~-n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~--l~~-ip~-l 118 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNR-LNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR--LST-LPE-L 118 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCS-SCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC--CSC-CCC-C
T ss_pred hhhhccccccCCccEEEeCC-CCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC--CCC-cch-h
Confidence 456665 999999999 45455887663 78898876555444 22 357999999999997 333 666 5
Q ss_pred ccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCC
Q 037964 86 CELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGF 165 (202)
Q Consensus 86 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 165 (202)
.+ +|+.|+++++. +.+ +.. . +++|+.|++++|.+...+. .+++|++|++++|.+.+ ++. ..
T Consensus 119 ~~--~L~~L~Ls~N~-----l~~-lp~-~-l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~--lp~-l~-- 179 (571)
T 3cvr_A 119 PA--SLKHLDVDNNQ-----LTM-LPE-L-PALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF--LPE-LP-- 179 (571)
T ss_dssp CT--TCCEEECCSSC-----CSC-CCC-C-CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC--CCC-CC--
T ss_pred hc--CCCEEECCCCc-----CCC-CCC-c-CccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC--cch-hh--
Confidence 55 99999998643 111 212 4 7899999999999987543 57899999999988765 333 22
Q ss_pred CcccEEEeccccCccceeeCCCccccc-------cEEeeecCC
Q 037964 166 PCLKFLHLKSMLWLDEWTMGTKATWKL-------EHLIINPCA 201 (202)
Q Consensus 166 ~~L~~L~l~~~~~l~~~~~~~~~~~~L-------~~L~i~~c~ 201 (202)
++|+.|++++|. +..++. .. ++| +.|++++|.
T Consensus 180 ~~L~~L~Ls~N~-L~~lp~-~~--~~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 180 ESLEALDVSTNL-LESLPA-VP--VRNHHSEETEIFFRCRENR 218 (571)
T ss_dssp TTCCEEECCSSC-CSSCCC-CC----------CCEEEECCSSC
T ss_pred CCCCEEECcCCC-CCchhh-HH--HhhhcccccceEEecCCCc
Confidence 899999999997 776665 22 267 999998864
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.14 E-value=2.3e-11 Score=88.35 Aligned_cols=119 Identities=16% Similarity=0.167 Sum_probs=93.1
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
.++.++++|..+. ++|++|++++ +....+|..+..+++|+.|+....... +..++..+++|+.|++++|+ ...
T Consensus 18 ~~~~l~~ip~~~~--~~l~~L~L~~-n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~--l~~ 92 (193)
T 2wfh_A 18 SNKGLKVLPKGIP--RDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR--LRC 92 (193)
T ss_dssp TTSCCSSCCSCCC--TTCCEEECCS-SCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCB
T ss_pred CCCCCCcCCCCCC--CCCCEEECCC-CcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc--cCE
Confidence 5678889997653 6899999999 665678888999999999986665544 33339999999999999998 555
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCC
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDD 132 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~ 132 (202)
..+..+..+++|+.|+++++. +. .+ .+.. +++|+.|++++|++..+
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~-----l~-~~~~~~~~~-l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGND-----IS-VVPEGAFND-LSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-----CC-BCCTTTTTT-CTTCCEEECCSSCEECS
T ss_pred eCHHHhCCCCCCCEEECCCCC-----CC-eeChhhhhc-CccccEEEeCCCCeecC
Confidence 566789999999999998643 11 11 3566 88999999999987654
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.11 E-value=2e-12 Score=94.19 Aligned_cols=66 Identities=17% Similarity=0.073 Sum_probs=30.4
Q ss_pred cccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeec
Q 037964 6 IDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDL 74 (202)
Q Consensus 6 ~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~ 74 (202)
+..+|.++..+++|++|++++ |....+| .++.+++|+.|+....... +.. +..+++|+.|++++|.
T Consensus 37 l~~l~~~~~~l~~L~~L~ls~-n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~L~~N~ 104 (198)
T 1ds9_A 37 IEKMDATLSTLKACKHLALST-NNIEKIS-SLSGMENLRILSLGRNLIKKIENL-DAVADTLEELWISYNQ 104 (198)
T ss_dssp CCCCHHHHHHTTTCSEEECSE-EEESCCC-CHHHHTTCCEEEEEEEEECSCSSH-HHHHHHCSEEEEEEEE
T ss_pred HhhhhHHHhcCCCCCEEECCC-CCCcccc-ccccCCCCCEEECCCCCcccccch-hhcCCcCCEEECcCCc
Confidence 334444555555555555555 3322344 4555555555543332211 222 3344555555555553
No 130
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.09 E-value=3.3e-11 Score=101.14 Aligned_cols=84 Identities=17% Similarity=0.168 Sum_probs=52.5
Q ss_pred CCCccEEEee--C----CCCCCCCCc-----cccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceee
Q 037964 116 PQSLTHLSLT--N----TKLKDDPMP-----TLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTM 184 (202)
Q Consensus 116 l~~L~~L~l~--~----~~~~~~~~~-----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 184 (202)
+++|+.|++. + +.++..+.+ .+..+++|+.|++++ .+.+..+......+++|+.|++++|. +.....
T Consensus 396 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~ 473 (594)
T 2p1m_B 396 RPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGM 473 (594)
T ss_dssp CTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHH
T ss_pred CCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC-CcHHHH
Confidence 6788888888 3 344433221 245678888888864 44333222122237889999999887 432211
Q ss_pred --CCCccccccEEeeecCC
Q 037964 185 --GTKATWKLEHLIINPCA 201 (202)
Q Consensus 185 --~~~~~~~L~~L~i~~c~ 201 (202)
-...+++|++|++++|+
T Consensus 474 ~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp HHHHHHCTTCCEEEEESCS
T ss_pred HHHHhcCCCcCEEECcCCC
Confidence 11458999999999986
No 131
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.09 E-value=1.8e-11 Score=87.46 Aligned_cols=59 Identities=12% Similarity=-0.033 Sum_probs=38.1
Q ss_pred HhccccccEEEeCceeeccccccccccCC-CcceecccccCch-hHHHcCcCCccceeeEEeec
Q 037964 13 IWKMHKLRHLNFGYIKLHAHPGKYCSALE-NLNFISALHLSSC-TRDILGRLPNLQSLKIFEDL 74 (202)
Q Consensus 13 ~~~l~~L~~L~l~~~~~~~~~p~~l~~l~-~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~ 74 (202)
+.++.+|++|++++ +....+|. +..+. +|+.|+..+.... ... ++.+++|++|++++|.
T Consensus 15 ~~~~~~L~~L~l~~-n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~ 75 (176)
T 1a9n_A 15 YTNAVRDRELDLRG-YKIPVIEN-LGATLDQFDAIDFSDNEIRKLDG-FPLLRRLKTLLVNNNR 75 (176)
T ss_dssp EECTTSCEEEECTT-SCCCSCCC-GGGGTTCCSEEECCSSCCCEECC-CCCCSSCCEEECCSSC
T ss_pred cCCcCCceEEEeeC-CCCchhHH-hhhcCCCCCEEECCCCCCCcccc-cccCCCCCEEECCCCc
Confidence 56678889999998 44334543 44444 7777765444433 444 6777777777777775
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.06 E-value=7.7e-11 Score=101.62 Aligned_cols=139 Identities=12% Similarity=0.055 Sum_probs=90.5
Q ss_pred ccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHHH
Q 037964 5 FIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVLS 82 (202)
Q Consensus 5 ~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 82 (202)
.+...|..+..+++|+.|++++ +....+|..+..+++|+.|++..+... |.+ ++++++|+.|+|++|. .. .+|
T Consensus 212 ~~~~~~~~~~~l~~L~~L~Ls~-n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~--l~-~lp 286 (727)
T 4b8c_D 212 RMVMPKDSKYDDQLWHALDLSN-LQIFNISANIFKYDFLTRLYLNGNSLTELPAE-IKNLSNLRVLDLSHNR--LT-SLP 286 (727)
T ss_dssp ----------CCCCCCEEECTT-SCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGG-GGGGTTCCEEECTTSC--CS-SCC
T ss_pred ceecChhhhccCCCCcEEECCC-CCCCCCChhhcCCCCCCEEEeeCCcCcccChh-hhCCCCCCEEeCcCCc--CC-ccC
Confidence 3444466678888888888888 555577777778888888876555444 666 8888888888888886 33 668
Q ss_pred HHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCC-CcceEEeccCccCC
Q 037964 83 KSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLP-HLLVLKLKQNSFSR 155 (202)
Q Consensus 83 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~ 155 (202)
..++.+++|++|+++++. -+.+ .+.. +++|+.|+|++|.+.+.++..+.... .+..+++.+|.+.+
T Consensus 287 ~~~~~l~~L~~L~L~~N~------l~~lp~~~~~-l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNM------VTTLPWEFGN-LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp SSGGGGTTCSEEECCSSC------CCCCCSSTTS-CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred hhhcCCCCCCEEECCCCC------CCccChhhhc-CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 888888888888887642 1122 4566 78888888888888876666655332 22235666666654
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.06 E-value=1.7e-10 Score=82.35 Aligned_cols=122 Identities=19% Similarity=0.131 Sum_probs=89.5
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQS 79 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (202)
.+++++++|..+. ++|++|++++|......+..++.+++|++|+....... +.++++.+++|+.|++++|. ...
T Consensus 15 ~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~--l~~ 90 (177)
T 2o6r_A 15 NSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK--LQS 90 (177)
T ss_dssp CSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCC
T ss_pred cCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC--ccc
Confidence 4677888886543 79999999994444444445788999999986655433 44437899999999999997 554
Q ss_pred HHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCC
Q 037964 80 VLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDP 133 (202)
Q Consensus 80 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~ 133 (202)
..+..+..+++|+.|+++++. +.+.. .+.. +++|+.|++++|++....
T Consensus 91 ~~~~~~~~l~~L~~L~l~~N~-----l~~~~~~~~~~-l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 91 LPNGVFDKLTQLKELALDTNQ-----LKSVPDGIFDR-LTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCTTTTTTCTTCCEEECCSSC-----CSCCCTTTTTT-CTTCCEEECCSSCBCCCH
T ss_pred cCHHHhhCCcccCEEECcCCc-----ceEeCHHHhcC-CcccCEEEecCCCeeccC
Confidence 444567899999999998643 11111 2466 889999999999888654
No 134
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.02 E-value=4.6e-13 Score=97.64 Aligned_cols=132 Identities=16% Similarity=0.106 Sum_probs=62.5
Q ss_pred HHHhccccccEEEeCceeecccccc------ccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHH
Q 037964 11 EDIWKMHKLRHLNFGYIKLHAHPGK------YCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSK 83 (202)
Q Consensus 11 ~~~~~l~~L~~L~l~~~~~~~~~p~------~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 83 (202)
..+.....++.++++.+...+..|. .++.+++|++|+....... ++. +.++++|++|++++|. ...+|.
T Consensus 12 ~~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~-~~~l~~L~~L~l~~n~---l~~l~~ 87 (198)
T 1ds9_A 12 RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNL---IKKIEN 87 (198)
T ss_dssp HHHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCCC-HHHHTTCCEEEEEEEE---ECSCSS
T ss_pred HHHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccccc-cccCCCCCEEECCCCC---cccccc
Confidence 3456667777777777544555543 4555555555553333222 223 5555556666665554 223444
Q ss_pred HhccCCCccEEEeecCcchhhchhccc-ccccCCCCccEEEeeCCCCCCCCC-ccccCCCCcceEEeccCcc
Q 037964 84 SLCELRCLDSLKLVNESNMLGILQIDI-AEYQFPQSLTHLSLTNTKLKDDPM-PTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 84 ~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~ 153 (202)
.+..+++|+.|+++++. +. .+ .+.. +++|+.|++++|.+...+. ..+..+++|++|++++|.+
T Consensus 88 ~~~~~~~L~~L~L~~N~-----l~-~l~~~~~-l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 88 LDAVADTLEELWISYNQ-----IA-SLSGIEK-LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHHHHCSEEEEEEEE-----CC-CHHHHHH-HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred hhhcCCcCCEEECcCCc-----CC-cCCcccc-CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 44444455555554321 00 00 1223 4445555555554443221 2344455555555554444
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.89 E-value=5.7e-10 Score=79.25 Aligned_cols=101 Identities=18% Similarity=0.086 Sum_probs=49.6
Q ss_pred cEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEe
Q 037964 20 RHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKL 96 (202)
Q Consensus 20 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 96 (202)
+++++++ +....+|..+. ++++.|+..+.... +.. ++++++|++|++++|+ .....+..+..+++|+.|++
T Consensus 12 ~~l~~s~-n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~-~~~l~~L~~L~Ls~N~--l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 12 TTVDCSG-KSLASVPTGIP--TTTQVLYLYDNQITKLEPGV-FDRLTQLTRLDLDNNQ--LTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTT-TTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEeCC-CCcCccCccCC--CCCcEEEcCCCcCCccChhh-hcCcccCCEEECCCCC--cCccChhhccCCCCCCEEEC
Confidence 4555555 44444554332 45555543333322 333 5555666666666554 33322333455566666666
Q ss_pred ecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCC
Q 037964 97 VNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDD 132 (202)
Q Consensus 97 ~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~ 132 (202)
+++. +.+.. .+.. +++|+.|++++|++...
T Consensus 86 ~~N~-----l~~~~~~~~~~-l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 86 NDNQ-----LKSIPRGAFDN-LKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CSSC-----CCCCCTTTTTT-CTTCCEEECCSSCBCTT
T ss_pred CCCc-----cCEeCHHHhcC-CCCCCEEEeCCCCCCCC
Confidence 5421 01100 2445 66777777777776654
No 136
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.89 E-value=5.8e-10 Score=79.59 Aligned_cols=102 Identities=19% Similarity=0.052 Sum_probs=49.4
Q ss_pred cEEEeCceeeccccccccccCCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEe
Q 037964 20 RHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKL 96 (202)
Q Consensus 20 ~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l 96 (202)
+.+++++ +....+|..+. ++|+.|+..+.... +.. ++++++|++|++++|+ .....+..+.++++|+.|++
T Consensus 15 ~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~--l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQITKLEPGV-FDHLVNLQQLYFNSNK--LTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCS-SCCSSCCSCCC--TTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCC-CCCCccCCCcC--CCCcEEEeCCCCccccCHHH-hcCCcCCCEEECCCCC--CCccChhHhCCcchhhEEEC
Confidence 3455555 44444554432 45555543333222 223 5555556666665554 22222223455556666665
Q ss_pred ecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCC
Q 037964 97 VNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDP 133 (202)
Q Consensus 97 ~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~ 133 (202)
+++. +.+.. .+.. +++|+.|++++|++...+
T Consensus 89 ~~N~-----l~~l~~~~~~~-l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 89 NDNH-----LKSIPRGAFDN-LKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CSSC-----CCCCCTTTTTT-CTTCSEEECCSSCBCTTB
T ss_pred CCCc-----cceeCHHHhcc-ccCCCEEEeCCCCccccc
Confidence 5421 01000 2455 677777777777766543
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.79 E-value=1.4e-08 Score=72.37 Aligned_cols=100 Identities=16% Similarity=0.093 Sum_probs=65.8
Q ss_pred ceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCc
Q 037964 66 QSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHL 143 (202)
Q Consensus 66 ~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 143 (202)
+.++++++. ...+|..+. ++|+.|+++++. +.+.. .+.. +++|+.|++++|++...+...+.++++|
T Consensus 15 ~~l~~~~n~---l~~iP~~~~--~~L~~L~Ls~N~-----l~~~~~~~~~~-l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 15 TLVNCQNIR---LASVPAGIP--TDKQRLWLNNNQ-----ITKLEPGVFDH-LVNLQQLYFNSNKLTAIPTGVFDKLTQL 83 (174)
T ss_dssp SEEECCSSC---CSSCCSCCC--TTCSEEECCSSC-----CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cEEEeCCCC---CCccCCCcC--CCCcEEEeCCCC-----ccccCHHHhcC-CcCCCEEECCCCCCCccChhHhCCcchh
Confidence 456666664 344555443 678888887532 11111 3556 7788888888888888776677788888
Q ss_pred ceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 144 LVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 144 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
++|++++|.+..-. +.....+++|+.|++++|+
T Consensus 84 ~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 84 TQLDLNDNHLKSIP-RGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSC
T ss_pred hEEECCCCccceeC-HHHhccccCCCEEEeCCCC
Confidence 88888877765311 1124567888888888877
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.76 E-value=8.2e-09 Score=80.75 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=37.9
Q ss_pred cccccEEEeCceeecc-------------------ccccc-ccc--------CCCcceecccccCch--hHHHcCcCCcc
Q 037964 16 MHKLRHLNFGYIKLHA-------------------HPGKY-CSA--------LENLNFISALHLSSC--TRDILGRLPNL 65 (202)
Q Consensus 16 l~~L~~L~l~~~~~~~-------------------~~p~~-l~~--------l~~L~~L~~~~~~~~--~~~~l~~l~~L 65 (202)
+++|++|++++|.... .+|.. +.+ +++|+++...+ ... ...||..+++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 6779999999943330 23332 455 78888877544 322 44448889999
Q ss_pred ceeeEEeec
Q 037964 66 QSLKIFEDL 74 (202)
Q Consensus 66 ~~L~l~~~~ 74 (202)
+.+++..+.
T Consensus 127 ~~l~l~~n~ 135 (329)
T 3sb4_A 127 KICQIRKKT 135 (329)
T ss_dssp CEEEBCCSS
T ss_pred ceEEcCCCC
Confidence 999888775
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.76 E-value=2.1e-08 Score=71.06 Aligned_cols=101 Identities=17% Similarity=0.131 Sum_probs=66.5
Q ss_pred cceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCC
Q 037964 65 LQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPH 142 (202)
Q Consensus 65 L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 142 (202)
.+.++++++. ...+|..+. ++|+.|+++++. +.+.. .+.. +++|+.|++++|++...++..+.++++
T Consensus 11 ~~~l~~s~n~---l~~ip~~~~--~~l~~L~L~~N~-----i~~~~~~~~~~-l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 79 (170)
T 3g39_A 11 GTTVDCSGKS---LASVPTGIP--TTTQVLYLYDNQ-----ITKLEPGVFDR-LTQLTRLDLDNNQLTVLPAGVFDKLTQ 79 (170)
T ss_dssp TTEEECTTSC---CSSCCSCCC--TTCSEEECCSSC-----CCCCCTTTTTT-CTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEEeCCCC---cCccCccCC--CCCcEEEcCCCc-----CCccChhhhcC-cccCCEEECCCCCcCccChhhccCCCC
Confidence 3456666664 333554442 678888887532 11111 3556 788888888888888777777788888
Q ss_pred cceEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 143 LLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 143 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
|++|++++|.+.+-. +.....+++|+.|++++|+
T Consensus 80 L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 80 LTQLSLNDNQLKSIP-RGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCccCEeC-HHHhcCCCCCCEEEeCCCC
Confidence 888888877775421 1224567888888888876
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.68 E-value=5.7e-10 Score=89.01 Aligned_cols=155 Identities=21% Similarity=0.192 Sum_probs=75.4
Q ss_pred ccccEEEeCceeecccccccccc-----CCCcceecccccCch---hHHHcCcCCccceeeEEeecCchHHH----HHHH
Q 037964 17 HKLRHLNFGYIKLHAHPGKYCSA-----LENLNFISALHLSSC---TRDILGRLPNLQSLKIFEDLSHYQSV----LSKS 84 (202)
Q Consensus 17 ~~L~~L~l~~~~~~~~~p~~l~~-----l~~L~~L~~~~~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~ 84 (202)
+.|++|++++|.....-...+.. ..+|++|+..++... +......+++|+.|++++|. ..+. +...
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~--l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS--LGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC--CCHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC--CCHHHHHHHHHH
Confidence 56677777774332221111211 246666664443321 22212234567777777765 3322 2223
Q ss_pred h-ccCCCccEEEeecCcchhhchhc--cc--ccccCCCCccEEEeeCCCCCCCC----CccccCCCCcceEEeccCccCC
Q 037964 85 L-CELRCLDSLKLVNESNMLGILQI--DI--AEYQFPQSLTHLSLTNTKLKDDP----MPTLEKLPHLLVLKLKQNSFSR 155 (202)
Q Consensus 85 l-~~l~~L~~L~l~~~~~~~~~~~~--~~--~~~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~ 155 (202)
+ ...++|+.|+++++.-. + .| .+ .+.. .++|+.|++++|.+...+ ...+...++|+.|++++|.+.+
T Consensus 150 L~~~~~~L~~L~Ls~n~l~-~--~~~~~l~~~L~~-~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLT-A--AGVAVLMEGLAG-NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGD 225 (372)
T ss_dssp HHSTTCCCCEEECCSSCCH-H--HHHHHHHHHHHT-CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCH
T ss_pred HHhcCCccceeeCCCCCCC-h--HHHHHHHHHHhc-CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCH
Confidence 3 23566777777653200 0 00 00 2244 566777777777665433 2334455667777777666543
Q ss_pred ceEE---EcCCCCCcccEEEecccc
Q 037964 156 RKLA---CCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 156 ~~~~---~~~~~~~~L~~L~l~~~~ 177 (202)
.... ......++|++|++++|.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCC
Confidence 2211 111134667777777765
No 141
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.63 E-value=9.3e-09 Score=81.64 Aligned_cols=164 Identities=16% Similarity=0.199 Sum_probs=83.8
Q ss_pred ccHHHhccccccEEEeCceeec---------cccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchH
Q 037964 9 TPEDIWKMHKLRHLNFGYIKLH---------AHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQ 78 (202)
Q Consensus 9 lp~~~~~l~~L~~L~l~~~~~~---------~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~ 78 (202)
+..++.++++|+.|.+...... ..++..+..+++|+.|......+. ... + .+++|+.|++..+. ..
T Consensus 131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~--l~ 206 (362)
T 2ra8_A 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGG--LP 206 (362)
T ss_dssp HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSB--CC
T ss_pred HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCC--CC
Confidence 3445667788888888652110 113233455677777764332212 222 3 26777777777665 44
Q ss_pred HHHHHHhc--cCCCccEEEeecCcc-h-hhc-hh--ccc-ccccCCCCccEEEeeCCCCCCCCCccc---cCCCCcceEE
Q 037964 79 SVLSKSLC--ELRCLDSLKLVNESN-M-LGI-LQ--IDI-AEYQFPQSLTHLSLTNTKLKDDPMPTL---EKLPHLLVLK 147 (202)
Q Consensus 79 ~~~~~~l~--~l~~L~~L~l~~~~~-~-~~~-~~--~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l---~~l~~L~~L~ 147 (202)
......++ .+++|+.|+++.... . -+. +. ..+ .... +++|+.|++.+|.+.......+ ..+++|++|+
T Consensus 207 ~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~-~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~Ld 285 (362)
T 2ra8_A 207 DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR-FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285 (362)
T ss_dssp HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTT-CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEE
T ss_pred hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCC-CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEE
Confidence 44444444 577777777753100 0 000 00 000 1123 5677777777776653221222 2456777777
Q ss_pred eccCccCCceE---EEcCCCCCcccEEEecccc
Q 037964 148 LKQNSFSRRKL---ACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 148 l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~ 177 (202)
++.|.+.+.+. ......+++|+.|++++|.
T Consensus 286 Ls~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 77666544221 1111246777777777665
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.60 E-value=4.7e-07 Score=70.68 Aligned_cols=99 Identities=15% Similarity=0.064 Sum_probs=62.4
Q ss_pred cCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCCccccCCCCcc-eEEeccCccCCceEEEcC
Q 037964 87 ELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLL-VLKLKQNSFSRRKLACCS 162 (202)
Q Consensus 87 ~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~ 162 (202)
.+++|+.++++.+. -..+ .+.. +.+|+.+++..+ +...+..+|.++++|+ .+++.. ... ..-....
T Consensus 224 ~~~~L~~l~L~~n~------i~~I~~~aF~~-~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF 293 (329)
T 3sb4_A 224 YMPNLVSLDISKTN------ATTIPDFTFAQ-KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAF 293 (329)
T ss_dssp HCTTCCEEECTTBC------CCEECTTTTTT-CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTT
T ss_pred hcCCCeEEECCCCC------cceecHhhhhC-CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhh
Confidence 36788888886421 0011 4566 788888888876 6666677888888888 888864 332 1101223
Q ss_pred CCCCcccEEEeccccCccceeeCC-CccccccEEe
Q 037964 163 GGFPCLKFLHLKSMLWLDEWTMGT-KATWKLEHLI 196 (202)
Q Consensus 163 ~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~ 196 (202)
.++++|+.+++..+. +..+.... ..+++|+.++
T Consensus 294 ~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 294 MGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred hCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence 457788888887666 66554332 3456777765
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.58 E-value=1.9e-08 Score=79.09 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=66.7
Q ss_pred ccccccHHHhccccccEEEeCc-eeeccccccccccCCCcceecccccCch--hHHHcCcCCccceeeEEeecCchHHHH
Q 037964 5 FIDHTPEDIWKMHKLRHLNFGY-IKLHAHPGKYCSALENLNFISALHLSSC--TRDILGRLPNLQSLKIFEDLSHYQSVL 81 (202)
Q Consensus 5 ~~~~lp~~~~~l~~L~~L~l~~-~~~~~~~p~~l~~l~~L~~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~ 81 (202)
+++.||. +..+++|++|++++ |......+..++.+++|+.|++.++... ++.+|+++++|+.|+|++|. .. .+
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~--l~-~~ 95 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA--LE-SL 95 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC--CS-CC
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc--cc-ee
Confidence 7888999 99999999999985 4444444466889999999986665544 43338999999999999997 33 34
Q ss_pred HH-HhccCCCccEEEeecC
Q 037964 82 SK-SLCELRCLDSLKLVNE 99 (202)
Q Consensus 82 ~~-~l~~l~~L~~L~l~~~ 99 (202)
|. .+..++ |+.|++.++
T Consensus 96 ~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 96 SWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp CSTTTCSCC-CCEEECCSS
T ss_pred CHHHcccCC-ceEEEeeCC
Confidence 44 344444 999998764
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.52 E-value=3.2e-08 Score=78.89 Aligned_cols=151 Identities=15% Similarity=0.103 Sum_probs=98.2
Q ss_pred CCCcccccc-HHHhcc-----ccccEEEeCceeeccccccc-cccCCCcceecccccCch------hHHHc-CcCCccce
Q 037964 2 PLSFIDHTP-EDIWKM-----HKLRHLNFGYIKLHAHPGKY-CSALENLNFISALHLSSC------TRDIL-GRLPNLQS 67 (202)
Q Consensus 2 ~~~~~~~lp-~~~~~l-----~~L~~L~l~~~~~~~~~p~~-l~~l~~L~~L~~~~~~~~------~~~~l-~~l~~L~~ 67 (202)
+++.++... ..+... ++|++|++++|.....-... ...+.+|++|+...+... ..+++ ...++|+.
T Consensus 80 s~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~ 159 (372)
T 3un9_A 80 AGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITT 159 (372)
T ss_dssp TTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCE
T ss_pred cCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccce
Confidence 455555533 223333 79999999995443322222 244678888886555422 22323 35789999
Q ss_pred eeEEeecCc--hHHHHHHHhccCCCccEEEeecCcchhhchhc--cc--ccccCCCCccEEEeeCCCCCCCCCc----cc
Q 037964 68 LKIFEDLSH--YQSVLSKSLCELRCLDSLKLVNESNMLGILQI--DI--AEYQFPQSLTHLSLTNTKLKDDPMP----TL 137 (202)
Q Consensus 68 L~l~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~--~~~~~l~~L~~L~l~~~~~~~~~~~----~l 137 (202)
|++++|... ....++..+...++|++|+++++.-. + .| .+ .+.. .++|+.|++++|.+...+.. .+
T Consensus 160 L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~-~--~g~~~L~~~L~~-~~~L~~L~Ls~N~i~~~g~~~l~~~L 235 (372)
T 3un9_A 160 LRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG-D--EGLELLAAQLDR-NRQLQELNVAYNGAGDTAALALARAA 235 (372)
T ss_dssp EECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH-H--HHHHHHHHHGGG-CSCCCEEECCSSCCCHHHHHHHHHHH
T ss_pred eeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC-c--HHHHHHHHHHhc-CCCcCeEECCCCCCCHHHHHHHHHHH
Confidence 999999721 12356677788999999999875300 0 01 01 3556 78999999999999865433 34
Q ss_pred cCCCCcceEEeccCccCCc
Q 037964 138 EKLPHLLVLKLKQNSFSRR 156 (202)
Q Consensus 138 ~~l~~L~~L~l~~~~~~~~ 156 (202)
...++|++|++++|.+.+.
T Consensus 236 ~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 236 REHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHCSSCCEEECTTSSCCHH
T ss_pred HhCCCCCEEeccCCCCCHH
Confidence 4679999999999887653
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.48 E-value=3.2e-08 Score=70.30 Aligned_cols=86 Identities=10% Similarity=0.030 Sum_probs=54.5
Q ss_pred CCccEEEeeCCCCCCCCCccccCCCCcceEEeccCc-cCCceEEEcCCC---CCcccEEEeccccCcccee-eCCCcccc
Q 037964 117 QSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNS-FSRRKLACCSGG---FPCLKFLHLKSMLWLDEWT-MGTKATWK 191 (202)
Q Consensus 117 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~---~~~L~~L~l~~~~~l~~~~-~~~~~~~~ 191 (202)
..|++|++++|.++......+.++++|++|+++++. +.+..+...... .++|+.|++++|..+++-- .....+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357888888887777667777778888888887654 333332222221 3568888888877665321 11235778
Q ss_pred ccEEeeecCCC
Q 037964 192 LEHLIINPCAS 202 (202)
Q Consensus 192 L~~L~i~~c~~ 202 (202)
|++|++++|++
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 88888888863
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.45 E-value=2.1e-07 Score=73.13 Aligned_cols=99 Identities=21% Similarity=0.097 Sum_probs=73.1
Q ss_pred eeEEeecCchHHHHHHHhccCCCccEEEeec-Ccchhhchhccc--ccccCCCCccEEEeeCCCCCCCCCccccCCCCcc
Q 037964 68 LKIFEDLSHYQSVLSKSLCELRCLDSLKLVN-ESNMLGILQIDI--AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLL 144 (202)
Q Consensus 68 L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 144 (202)
++++++. ....+|. +..+++|+.|++++ +. +.+.. .+.. +++|+.|+|++|++...++..|+++++|+
T Consensus 13 v~~~~~n--~l~~ip~-l~~~~~L~~L~l~~~n~-----l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 13 LRCTRDG--ALDSLHH-LPGAENLTELYIENQQH-----LQHLELRDLRG-LGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp EECCSSC--CCTTTTT-SCSCSCCSEEECCSCSS-----CCEECGGGSCS-CCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred EEcCCCC--CCCccCC-CCCCCCeeEEEccCCCC-----CCCcChhHhcc-ccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 4555441 2445888 99999999999974 32 11111 4677 99999999999999998888999999999
Q ss_pred eEEeccCccCCceEEEcCCCCCcccEEEecccc
Q 037964 145 VLKLKQNSFSRRKLACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 145 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 177 (202)
.|++++|.+.+ ++........|+.|++.+|+
T Consensus 84 ~L~l~~N~l~~--~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 84 RLNLSFNALES--LSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp EEECCSSCCSC--CCSTTTCSCCCCEEECCSSC
T ss_pred EEeCCCCccce--eCHHHcccCCceEEEeeCCC
Confidence 99999988864 22222222239999999987
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.41 E-value=7.2e-07 Score=71.74 Aligned_cols=67 Identities=6% Similarity=0.010 Sum_probs=35.7
Q ss_pred cccccc-HHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEe
Q 037964 5 FIDHTP-EDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFE 72 (202)
Q Consensus 5 ~~~~lp-~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~ 72 (202)
.+..|+ .++.++++|+.+++.. +....++...-...+|+.+..-..-.. ...||.++++|+.+.+..
T Consensus 167 ~l~~I~~~aF~~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 167 TLEQLKEDIFYYCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TCCEECSSTTTTCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCT
T ss_pred CccEehHHHhhCcccCCeeecCC-CcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCC
Confidence 344454 3567777777777776 444445544322455555543211111 333366677777666654
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.34 E-value=2.1e-06 Score=69.03 Aligned_cols=185 Identities=8% Similarity=-0.007 Sum_probs=110.0
Q ss_pred CCCccccccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHH
Q 037964 2 PLSFIDHTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSV 80 (202)
Q Consensus 2 ~~~~~~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (202)
+.+++..||.......+|+.+.+.. +....-...+.++.+|+.+..-..-.. ...||.+ .+|+.+.+..+ ....
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~---i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNG---VTNI 262 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETT---CCEE
T ss_pred CCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCC---ccEE
Confidence 4567888887655578999999987 433333334778888888874332122 3333666 78888888543 3333
Q ss_pred HHHHhccCCCccEEEeecCcchhhchhccc---ccccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCce
Q 037964 81 LSKSLCELRCLDSLKLVNESNMLGILQIDI---AEYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRK 157 (202)
Q Consensus 81 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 157 (202)
-...|..+++|+.+++..+....+ -...+ .+.. +++|+.+++. +.+...+..+|.++.+|+.+++.. .... .
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~-~~~~I~~~aF~~-c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~-~l~~-I 337 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDD-PEAMIHPYCLEG-CPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPA-NVTQ-I 337 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCC-TTCEECTTTTTT-CTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECT-TCCE-E
T ss_pred ChhHhhCCCCCCEEEeCCccccCC-cccEECHHHhhC-CccCCeEEeC-CceEEEhhhhhcCCCCccEEEECc-cccE-E
Confidence 456778888898888865320000 00011 4566 7888888887 446666677888888888888863 3211 1
Q ss_pred EEEcCCCCCcccEEEeccccCccceeeC-CCccc-cccEEeee
Q 037964 158 LACCSGGFPCLKFLHLKSMLWLDEWTMG-TKATW-KLEHLIIN 198 (202)
Q Consensus 158 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~-~L~~L~i~ 198 (202)
-.....++ +|+.+.+.++. ...+... -..++ .++.|.+.
T Consensus 338 ~~~aF~~~-~L~~l~l~~n~-~~~l~~~~F~~~~~~l~~l~vp 378 (401)
T 4fdw_A 338 NFSAFNNT-GIKEVKVEGTT-PPQVFEKVWYGFPDDITVIRVP 378 (401)
T ss_dssp CTTSSSSS-CCCEEEECCSS-CCBCCCSSCCCSCTTCCEEEEC
T ss_pred cHHhCCCC-CCCEEEEcCCC-CcccccccccCCCCCccEEEeC
Confidence 01122345 78888888775 4333221 12232 45666553
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.30 E-value=6.4e-07 Score=71.04 Aligned_cols=140 Identities=19% Similarity=0.236 Sum_probs=89.9
Q ss_pred cccHHHhccccccEEEeCceeeccccccccccCCCcceecccccCch---hHHHcC--cCCccceeeEEeecCch-----
Q 037964 8 HTPEDIWKMHKLRHLNFGYIKLHAHPGKYCSALENLNFISALHLSSC---TRDILG--RLPNLQSLKIFEDLSHY----- 77 (202)
Q Consensus 8 ~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~~~~~~~~---~~~~l~--~l~~L~~L~l~~~~~~~----- 77 (202)
.++..+..+++|+.|.+++ +....++. + .+++|++|........ ... +. .+|+|+.|+|+.+....
T Consensus 163 ~L~~ll~~~P~L~~L~L~g-~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~-l~~~~lp~L~~L~L~~~~~~~~~~~~ 238 (362)
T 2ra8_A 163 DLSPVLDAMPLLNNLKIKG-TNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED-ILGSDLPNLEKLVLYVGVEDYGFDGD 238 (362)
T ss_dssp BCHHHHHTCTTCCEEEEEC-CBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH-HHHSBCTTCCEEEEECBCGGGTCCSC
T ss_pred CHHHHHhcCCCCcEEEEeC-CCCceecc-c-cCCCCcEEEEecCCCChHHHHH-HHHccCCCCcEEEEeccccccccchh
Confidence 4667778899999999998 43334554 3 3789999985443322 434 43 78999999997421001
Q ss_pred HHHHHHHh--ccCCCccEEEeecCcchhhchhcc--c-ccccCCCCccEEEeeCCCCCCCCCc----cccCCCCcceEEe
Q 037964 78 QSVLSKSL--CELRCLDSLKLVNESNMLGILQID--I-AEYQFPQSLTHLSLTNTKLKDDPMP----TLEKLPHLLVLKL 148 (202)
Q Consensus 78 ~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~--~-~~~~~l~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l 148 (202)
...+...+ ..+++|+.|++..+.-. + .+. + .... +++|+.|+|+.|.+...... .+..+++|+.|++
T Consensus 239 ~~~l~~~l~~~~~p~Lr~L~L~~~~i~-~--~~~~~la~a~~-~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 239 MNVFRPLFSKDRFPNLKWLGIVDAEEQ-N--VVVEMFLESDI-LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp GGGTGGGSCTTTCTTCCEEEEESCTTH-H--HHHHHHHHCSS-GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred HHHHHHHHhcCCCCCcCEEeCCCCCCc-h--HHHHHHHhCcc-CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 11222233 25789999999864310 0 000 1 1124 78999999999988764322 3356799999999
Q ss_pred ccCccCC
Q 037964 149 KQNSFSR 155 (202)
Q Consensus 149 ~~~~~~~ 155 (202)
+.|.+.+
T Consensus 315 ~~n~i~d 321 (362)
T 2ra8_A 315 KYNYLSD 321 (362)
T ss_dssp CSBBCCH
T ss_pred CCCcCCH
Confidence 9776644
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.96 E-value=1.4e-06 Score=62.48 Aligned_cols=119 Identities=9% Similarity=0.084 Sum_probs=73.2
Q ss_pred hHHHcCcCCccceeeEEee-cC--chHHHHHHHhccCCCccEEEeecCcchhhchhcc--c--ccccCCCCccEEEeeCC
Q 037964 55 TRDILGRLPNLQSLKIFED-LS--HYQSVLSKSLCELRCLDSLKLVNESNMLGILQID--I--AEYQFPQSLTHLSLTNT 127 (202)
Q Consensus 55 ~~~~l~~l~~L~~L~l~~~-~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~--~~~~~l~~L~~L~l~~~ 127 (202)
...++...++|++|++++| .. .....+...+...++|+.|+++++.-. + .|. + .+.. .++|++|+|++|
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~-~--~g~~~l~~~L~~-n~~L~~L~L~~N 103 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN-D--PVAFALAEMLKV-NNTLKSLNVESN 103 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC-H--HHHHHHHHHHHH-CSSCCEEECCSS
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC-h--HHHHHHHHHHHh-CCCcCEEECcCC
Confidence 3444777888888888887 51 123446667777788888888763200 0 010 1 2344 577888888888
Q ss_pred CCCCCC----CccccCCCCcceEEe--ccCccCCceEE---EcCCCCCcccEEEecccc
Q 037964 128 KLKDDP----MPTLEKLPHLLVLKL--KQNSFSRRKLA---CCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 128 ~~~~~~----~~~l~~l~~L~~L~l--~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~ 177 (202)
.+.... ...+...+.|++|++ ++|.+..+... ......++|++|++++|.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 877644 334556678888888 66666543311 112234678888887776
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.88 E-value=2.1e-05 Score=55.75 Aligned_cols=66 Identities=14% Similarity=0.162 Sum_probs=29.6
Q ss_pred cCcCCccceeeEEeecCchHHHHHHHhccC----CCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCC
Q 037964 59 LGRLPNLQSLKIFEDLSHYQSVLSKSLCEL----RCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTK 128 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l----~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 128 (202)
+..+++|+.|++++|.. .++.-...++.+ ++|+.|+++++..+.| .|-..+.. +++|+.|++++|.
T Consensus 81 L~~~~~L~~L~L~~C~~-ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~L~~-~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 81 MEGLQYVEKIRLCKCHY-IEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGIIALHH-FRNLKYLFLSDLP 150 (176)
T ss_dssp GTTCSCCCEEEEESCTT-CCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHHHHGGG-CTTCCEEEEESCT
T ss_pred hcCCCCCCEEEeCCCCc-cCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHHHHHhc-CCCCCEEECCCCC
Confidence 45555555555555531 233333344432 2455555555322111 11002344 5666666666653
No 152
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.82 E-value=1.2e-05 Score=57.54 Aligned_cols=92 Identities=21% Similarity=0.134 Sum_probs=50.2
Q ss_pred cCcCCccceeeEEeecCc--hHHHHHHHhccCCCccEEEeecCcchhhchhcc--c--ccccCCCCccEEEe--eCCCCC
Q 037964 59 LGRLPNLQSLKIFEDLSH--YQSVLSKSLCELRCLDSLKLVNESNMLGILQID--I--AEYQFPQSLTHLSL--TNTKLK 130 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~--~~~~~l~~L~~L~l--~~~~~~ 130 (202)
+...++|++|++++|... ....+...+...+.|+.|+++++.=. + .|. + .+.. .++|+.|++ ++|.+.
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~-~--~g~~~l~~~L~~-n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS-G--SGILALVEALQS-NTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC-H--HHHHHHHHGGGG-CSSCCEEECCCCSSCCC
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC-H--HHHHHHHHHHHh-CCCceEEEecCCCCCCC
Confidence 555666777777666511 12234445555566777777653200 0 010 0 3444 567777777 667766
Q ss_pred CCCC----ccccCCCCcceEEeccCccC
Q 037964 131 DDPM----PTLEKLPHLLVLKLKQNSFS 154 (202)
Q Consensus 131 ~~~~----~~l~~l~~L~~L~l~~~~~~ 154 (202)
.... ..+...+.|++|++++|.+.
T Consensus 137 ~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 137 NNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 5432 23344577888888766653
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.70 E-value=2.2e-05 Score=59.49 Aligned_cols=80 Identities=16% Similarity=0.097 Sum_probs=53.2
Q ss_pred hccccccEEEeCceeecc--ccccccccCCCcceecccccCch-hHHHcCcCC--ccceeeEEeecCchH-------HHH
Q 037964 14 WKMHKLRHLNFGYIKLHA--HPGKYCSALENLNFISALHLSSC-TRDILGRLP--NLQSLKIFEDLSHYQ-------SVL 81 (202)
Q Consensus 14 ~~l~~L~~L~l~~~~~~~--~~p~~l~~l~~L~~L~~~~~~~~-~~~~l~~l~--~L~~L~l~~~~~~~~-------~~~ 81 (202)
.++++|+.|++++|.... .+|..++.+++|+.|++.++... ..+ ++.+. +|+.|++.+|. .. ...
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L~~Np--l~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNS--LCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTSCCSEEECTTST--TGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccCCcceEEccCCc--CccccCcchhHH
Confidence 467889999999954433 44555677888888886655444 444 44444 88888888887 33 223
Q ss_pred HHHhccCCCccEEEe
Q 037964 82 SKSLCELRCLDSLKL 96 (202)
Q Consensus 82 ~~~l~~l~~L~~L~l 96 (202)
...+..+++|+.||=
T Consensus 244 ~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 244 SAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHCTTCCEESS
T ss_pred HHHHHHCcccCeECC
Confidence 345677788887753
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.65 E-value=1.5e-05 Score=60.46 Aligned_cols=81 Identities=22% Similarity=0.158 Sum_probs=56.3
Q ss_pred ccCCCCccEEEeeCCCCCCCC--CccccCCCCcceEEeccCccCCceEEEcCCCCC--cccEEEeccccCcccee-----
Q 037964 113 YQFPQSLTHLSLTNTKLKDDP--MPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFP--CLKFLHLKSMLWLDEWT----- 183 (202)
Q Consensus 113 ~~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~l~~~~----- 183 (202)
.. +++|+.|+|++|++.+.. +..++.+++|+.|++++|.+.+.. ..+.+. +|+.|++++|+....++
T Consensus 167 ~~-l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~---~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 EN-IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER---ELDKIKGLKLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HH-CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG---GGGGGTTSCCSEEECTTSTTGGGCSSHHHH
T ss_pred hh-CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch---hhhhcccCCcceEEccCCcCccccCcchhH
Confidence 45 788999999999888743 345668999999999988886531 122233 89999999998333222
Q ss_pred --eCCCccccccEEee
Q 037964 184 --MGTKATWKLEHLII 197 (202)
Q Consensus 184 --~~~~~~~~L~~L~i 197 (202)
.....||+|+.|+=
T Consensus 243 ~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHCTTCCEESS
T ss_pred HHHHHHHCcccCeECC
Confidence 11356888888763
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.11 E-value=0.0061 Score=40.77 Aligned_cols=38 Identities=34% Similarity=0.442 Sum_probs=34.7
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCcc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSF 153 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 153 (202)
+.+++.|+|++|++...+...|..+++|+.|++.+|.+
T Consensus 30 p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 30 PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 56899999999999999888999999999999998876
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.63 E-value=0.034 Score=44.08 Aligned_cols=60 Identities=15% Similarity=0.062 Sum_probs=29.6
Q ss_pred cccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEecc
Q 037964 112 EYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKS 175 (202)
Q Consensus 112 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 175 (202)
+.. +.+|+.+++..+ +...+..+|.++.+|+.+++..+ .. ..-.....++++|+.+.+..
T Consensus 316 F~~-c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 316 FES-CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTT-CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEG
T ss_pred hcC-CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECC
Confidence 444 566666666432 44444556666666666666422 21 00011123455666666643
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.49 E-value=0.015 Score=46.09 Aligned_cols=83 Identities=12% Similarity=0.073 Sum_probs=56.3
Q ss_pred cCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCcccc
Q 037964 59 LGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLE 138 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 138 (202)
+..+.+|+.+.+..+ ....-...+..+.+|+.+++...-.. -|.-.+.. +.+|+.+++..+ +...+..+|.
T Consensus 293 F~~~~~L~~i~l~~~---i~~I~~~aF~~c~~L~~i~lp~~v~~----I~~~aF~~-c~~L~~i~lp~~-l~~I~~~aF~ 363 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS---VKFIGEEAFESCTSLVSIDLPYLVEE----IGKRSFRG-CTSLSNINFPLS-LRKIGANAFQ 363 (394)
T ss_dssp TTTCTTCCEEEECTT---CCEECTTTTTTCTTCCEECCCTTCCE----ECTTTTTT-CTTCCEECCCTT-CCEECTTTBT
T ss_pred ccccccccccccccc---cceechhhhcCCCCCCEEEeCCcccE----EhHHhccC-CCCCCEEEECcc-ccEehHHHhh
Confidence 667777887777543 22223346777888888888642100 00004666 889999999765 6666678999
Q ss_pred CCCCcceEEecc
Q 037964 139 KLPHLLVLKLKQ 150 (202)
Q Consensus 139 ~l~~L~~L~l~~ 150 (202)
++.+|+.+++..
T Consensus 364 ~C~~L~~i~lp~ 375 (394)
T 4fs7_A 364 GCINLKKVELPK 375 (394)
T ss_dssp TCTTCCEEEEEG
T ss_pred CCCCCCEEEECC
Confidence 999999999963
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.23 E-value=0.0075 Score=47.92 Aligned_cols=126 Identities=10% Similarity=0.070 Sum_probs=71.3
Q ss_pred cccCCCcceecccccCch-hHHHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhcccccccC
Q 037964 37 CSALENLNFISALHLSSC-TRDILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQF 115 (202)
Q Consensus 37 l~~l~~L~~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 115 (202)
+.++.+|+.+..-+.... ...++.++++|+.+.+... ....-...|..+.+|+.+++..+-.. -|.-.+..
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~---i~~I~~~aF~~c~~L~~i~lp~~v~~----I~~~aF~~- 332 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSR---ITELPESVFAGCISLKSIDIPEGITQ----ILDDAFAG- 332 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTT---CCEECTTTTTTCTTCCEEECCTTCCE----ECTTTTTT-
T ss_pred eeecccccEEecccccceecCcccccccccccccCCCc---ccccCceeecCCCCcCEEEeCCcccE----ehHhHhhC-
Confidence 555666766653222122 3333777888888877532 22223346777888888888642100 00004666
Q ss_pred CCCccEEEeeCCCCCCCCCccccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEecc
Q 037964 116 PQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKS 175 (202)
Q Consensus 116 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 175 (202)
+.+|+.+.+..+ +...+..+|.++.+|+.+++.++..... ....+.+|+.+.+..
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~----~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN----AISTDSGLQNLPVAP 387 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH----TCBCCCCC-------
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh----hhhccCCCCEEEeCC
Confidence 889999999644 6666678899999999999975443211 122345566665543
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.13 E-value=0.028 Score=44.18 Aligned_cols=83 Identities=14% Similarity=0.092 Sum_probs=47.5
Q ss_pred cCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCcccc
Q 037964 59 LGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLE 138 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 138 (202)
+..+.+|+.+.+..+ ....-...+..+.+|+.+.+...-.. -+.-.+.. +.+|+.+.+.++.+...+..+|.
T Consensus 236 f~~~~~L~~i~lp~~---v~~I~~~aF~~~~~l~~i~l~~~i~~----i~~~aF~~-c~~L~~i~l~~~~i~~I~~~aF~ 307 (379)
T 4h09_A 236 FYGMKALDEIAIPKN---VTSIGSFLLQNCTALKTLNFYAKVKT----VPYLLCSG-CSNLTKVVMDNSAIETLEPRVFM 307 (379)
T ss_dssp TTTCSSCCEEEECTT---CCEECTTTTTTCTTCCEEEECCCCSE----ECTTTTTT-CTTCCEEEECCTTCCEECTTTTT
T ss_pred ccCCccceEEEcCCC---ccEeCccccceeehhcccccccccee----cccccccc-ccccccccccccccceehhhhhc
Confidence 566667776666543 22222334556666777766431100 00003445 67777777777766666666777
Q ss_pred CCCCcceEEec
Q 037964 139 KLPHLLVLKLK 149 (202)
Q Consensus 139 ~l~~L~~L~l~ 149 (202)
++.+|+.+.+.
T Consensus 308 ~c~~L~~i~lp 318 (379)
T 4h09_A 308 DCVKLSSVTLP 318 (379)
T ss_dssp TCTTCCEEECC
T ss_pred CCCCCCEEEcC
Confidence 77777777775
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.06 E-value=0.042 Score=43.52 Aligned_cols=128 Identities=10% Similarity=0.104 Sum_probs=77.6
Q ss_pred HHcCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCcc
Q 037964 57 DILGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPT 136 (202)
Q Consensus 57 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 136 (202)
.|+..+++|+.+.+... ....-...+..++.|+.+.+...-.. -+.-.+.. +.+|+.+++..+ +...+..+
T Consensus 259 ~aF~~c~~L~~i~lp~~---~~~I~~~aF~~c~~L~~i~l~~~i~~----I~~~aF~~-c~~L~~i~lp~~-v~~I~~~a 329 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS---VVSIGTGAFMNCPALQDIEFSSRITE----LPESVFAG-CISLKSIDIPEG-ITQILDDA 329 (394)
T ss_dssp TTTTTCSSCCEEECCTT---CCEECTTTTTTCTTCCEEECCTTCCE----ECTTTTTT-CTTCCEEECCTT-CCEECTTT
T ss_pred ceeeecccccEEecccc---cceecCcccccccccccccCCCcccc----cCceeecC-CCCcCEEEeCCc-ccEehHhH
Confidence 34888999999988654 23333456778899999988642100 00004666 889999999754 66566678
Q ss_pred ccCCCCcceEEeccCccCCceEEEcCCCCCcccEEEeccccCccceeeCCCccccccEEeee
Q 037964 137 LEKLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLKSMLWLDEWTMGTKATWKLEHLIIN 198 (202)
Q Consensus 137 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~ 198 (202)
|.++.+|+.+.+- +.... .-..-..++.+|+.+.+.++.. .+. ....+..|+.+.+.
T Consensus 330 F~~C~~L~~i~ip-~sv~~-I~~~aF~~C~~L~~i~~~~~~~--~~~-~~~~~~~L~~i~i~ 386 (394)
T 4gt6_A 330 FAGCEQLERIAIP-SSVTK-IPESAFSNCTALNNIEYSGSRS--QWN-AISTDSGLQNLPVA 386 (394)
T ss_dssp TTTCTTCCEEEEC-TTCCB-CCGGGGTTCTTCCEEEESSCHH--HHH-TCBCCCCC------
T ss_pred hhCCCCCCEEEEC-cccCE-EhHhHhhCCCCCCEEEECCcee--ehh-hhhccCCCCEEEeC
Confidence 9999999999996 33321 1012335688999999887541 111 11234566666654
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.77 E-value=0.024 Score=44.63 Aligned_cols=106 Identities=12% Similarity=0.085 Sum_probs=48.5
Q ss_pred cCcCCccceeeEEeecCchHHHHHHHhccCCCccEEEeecCcchhhchhcccccccCCCCccEEEeeCCCCCCCCCcccc
Q 037964 59 LGRLPNLQSLKIFEDLSHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDIAEYQFPQSLTHLSLTNTKLKDDPMPTLE 138 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 138 (202)
+....+|+.+.+... ....-...+..+..|+.+.+..+-.. -|...+.. +.+|+.+.+.. ++...+..++.
T Consensus 213 f~~~~~l~~i~~~~~---~~~i~~~~f~~~~~L~~i~lp~~v~~----I~~~aF~~-~~~l~~i~l~~-~i~~i~~~aF~ 283 (379)
T 4h09_A 213 FSYGKNLKKITITSG---VTTLGDGAFYGMKALDEIAIPKNVTS----IGSFLLQN-CTALKTLNFYA-KVKTVPYLLCS 283 (379)
T ss_dssp TTTCSSCSEEECCTT---CCEECTTTTTTCSSCCEEEECTTCCE----ECTTTTTT-CTTCCEEEECC-CCSEECTTTTT
T ss_pred cccccccceeeeccc---eeEEccccccCCccceEEEcCCCccE----eCccccce-eehhccccccc-cceeccccccc
Confidence 445556665555432 12222234455666666666432100 00002344 55666666643 24444445666
Q ss_pred CCCCcceEEeccCccCCceEEEcCCCCCcccEEEec
Q 037964 139 KLPHLLVLKLKQNSFSRRKLACCSGGFPCLKFLHLK 174 (202)
Q Consensus 139 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~ 174 (202)
++.+|+.+.+..+.... .-.....++.+|+.+.+-
T Consensus 284 ~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECC
T ss_pred cccccccccccccccce-ehhhhhcCCCCCCEEEcC
Confidence 66777777665333321 000112234556666553
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.52 E-value=0.21 Score=35.78 Aligned_cols=119 Identities=10% Similarity=0.063 Sum_probs=63.5
Q ss_pred hHHHcCcCCccceeeEEee-c--CchHHHHHHHhccCCCccEEEeecCcchhhchhccc----ccccCCCCccEEEeeCC
Q 037964 55 TRDILGRLPNLQSLKIFED-L--SHYQSVLSKSLCELRCLDSLKLVNESNMLGILQIDI----AEYQFPQSLTHLSLTNT 127 (202)
Q Consensus 55 ~~~~l~~l~~L~~L~l~~~-~--~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~~~~l~~L~~L~l~~~ 127 (202)
...++.+-+.|+.|+++++ . ......+.+.+..-+.|+.|+++++.-. + .|.. .+.. =+.|+.|+|++|
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig-d--~ga~alA~aL~~-N~tL~~L~L~~N 108 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS-D--SEARGLIELIET-SPSLRVLNVESN 108 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB-H--HHHTTHHHHHHH-CSSCCEEECCSS
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC-h--HHHHHHHHHHhc-CCccCeEecCCC
Confidence 3333555677888888764 3 1123345666776678888888753200 0 0111 2233 467888888888
Q ss_pred CCCCCCCc----cccCCCCcceEEeccCc--cCCce----EEEcCCCCCcccEEEecccc
Q 037964 128 KLKDDPMP----TLEKLPHLLVLKLKQNS--FSRRK----LACCSGGFPCLKFLHLKSML 177 (202)
Q Consensus 128 ~~~~~~~~----~l~~l~~L~~L~l~~~~--~~~~~----~~~~~~~~~~L~~L~l~~~~ 177 (202)
.+...+.. .+..-..|++|+++++. ..+.. +......-++|+.|+++.+.
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 87754433 33444568888886321 11211 11111224567777776543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.42 E-value=0.17 Score=36.30 Aligned_cols=42 Identities=7% Similarity=0.033 Sum_probs=22.8
Q ss_pred hHHHcCcCCccceeeEEeecCchHH----HHHHHhccCCCccEEEeec
Q 037964 55 TRDILGRLPNLQSLKIFEDLSHYQS----VLSKSLCELRCLDSLKLVN 98 (202)
Q Consensus 55 ~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~L~~L~l~~ 98 (202)
..+++..-+.|+.|+|++|. ..+ .+.+.+..=+.|+.|+++.
T Consensus 62 la~aL~~N~~L~~L~L~~n~--igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 62 LIEAACNSKHIEKFSLANTA--ISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHHHTTCSCCCEEECTTSC--CBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHhhCCCcCEEEccCCC--CChHHHHHHHHHHhcCCccCeEecCC
Confidence 34445555666666666665 322 2334444446666666664
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=88.84 E-value=0.3 Score=32.31 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=8.6
Q ss_pred cCcCCccceeeEEeec
Q 037964 59 LGRLPNLQSLKIFEDL 74 (202)
Q Consensus 59 l~~l~~L~~L~l~~~~ 74 (202)
+..+++|+.|+|.+|.
T Consensus 51 f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 51 LDALPALRTAHLGANP 66 (130)
T ss_dssp GGGCTTCCEEECCSSC
T ss_pred hhhccccCEEEecCCC
Confidence 4455555555555554
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.32 E-value=1.2e+02 Score=18.51 Aligned_cols=37 Identities=8% Similarity=-0.101 Sum_probs=23.8
Q ss_pred cccCCCCccEEEeeCCCCCCCCCccccCCCCcceEEecc
Q 037964 112 EYQFPQSLTHLSLTNTKLKDDPMPTLEKLPHLLVLKLKQ 150 (202)
Q Consensus 112 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 150 (202)
+.. +.+|+.+.|-.+ +......+|.++.+|+.+.+..
T Consensus 16 F~~-c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 16 FAG-NTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTT-CTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred hcC-CCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 445 667777777543 4444456777778888777764
Done!