Query 037966
Match_columns 205
No_of_seqs 79 out of 81
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 10:12:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037966.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037966hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xo0_A Recombinase CRE; CRE re 91.8 0.45 1.5E-05 36.5 6.5 72 60-159 24-96 (324)
2 3nrw_A Phage integrase/site-sp 85.9 2.9 0.0001 28.8 6.7 69 62-157 32-102 (117)
3 1a0p_A Site-specific recombina 80.7 3.9 0.00013 30.8 6.0 70 60-157 25-96 (290)
4 2ols_A Phosphoenolpyruvate syn 78.1 1.7 5.9E-05 41.8 4.1 39 137-175 561-629 (794)
5 2oxo_A Integrase; DNA-binding 74.7 10 0.00036 23.6 5.9 62 64-157 29-93 (103)
6 2x0s_A Pyruvate phosphate diki 74.3 3.3 0.00011 40.7 4.9 24 152-175 683-709 (913)
7 2khq_A Integrase; all-alpha, s 72.5 8.6 0.00029 25.2 5.3 63 64-157 30-94 (110)
8 2kkp_A Phage integrase; SAM-li 67.7 12 0.00041 24.6 5.2 53 79-157 47-101 (117)
9 2zxj_A Transcriptional regulat 65.0 2.8 9.7E-05 31.3 1.8 21 132-152 76-96 (120)
10 2xz9_A Phosphoenolpyruvate-pro 63.6 10 0.00035 32.7 5.3 34 134-167 62-117 (324)
11 2eqe_A Tumor necrosis factor, 63.4 4.7 0.00016 27.7 2.5 26 98-123 11-36 (48)
12 1vbg_A Pyruvate,orthophosphate 62.7 6 0.0002 39.0 4.1 25 151-175 662-689 (876)
13 3zq7_A KDP operon transcriptio 61.4 4.1 0.00014 28.1 1.9 21 131-151 67-87 (102)
14 1z19_A Integrase; protein-DNA 61.2 14 0.00048 27.7 5.0 65 62-157 27-93 (283)
15 2kj8_A Putative prophage CPS-5 60.6 34 0.0012 23.0 6.5 51 80-157 45-97 (118)
16 2key_A Putative phage integras 60.6 5 0.00017 26.6 2.2 51 80-157 47-101 (112)
17 2wqd_A Phosphoenolpyruvate-pro 59.9 11 0.00036 35.5 5.0 42 133-174 312-377 (572)
18 2kkv_A Integrase; protein stru 58.7 38 0.0013 22.7 7.4 51 79-157 45-98 (121)
19 2z9m_A Response regulator YYCF 58.2 4.5 0.00015 29.0 1.8 21 131-151 75-95 (120)
20 1kbl_A PPDK, pyruvate phosphat 57.3 7.2 0.00024 38.4 3.5 25 151-175 655-682 (873)
21 2kiw_A INT protein; alpha, str 56.7 38 0.0013 22.1 6.2 50 80-157 39-91 (111)
22 1tac_A TAT protein; transcript 56.6 3.9 0.00013 30.9 1.2 15 172-186 39-53 (86)
23 2kd1_A DNA integration/recombi 54.5 23 0.0008 23.4 4.8 52 79-157 45-99 (118)
24 2hwg_A Phosphoenolpyruvate-pro 53.2 12 0.00042 35.0 4.3 34 133-166 310-365 (575)
25 3rjp_A COVR; winged helix-turn 49.0 8.5 0.00029 26.2 1.9 18 131-148 61-78 (96)
26 3mi9_C Protein TAT; P-TEFB, HI 46.9 4.6 0.00016 30.5 0.3 15 171-185 38-52 (86)
27 2k4j_A Putative transcriptiona 42.2 19 0.00066 25.9 3.0 20 131-150 80-99 (115)
28 2pk2_A Cyclin-T1, protein TAT; 40.2 6 0.0002 34.3 0.0 21 151-180 312-332 (358)
29 2kob_A Uncharacterized protein 38.9 51 0.0017 21.2 4.4 29 129-157 62-92 (108)
30 2hqn_A Putative transcriptiona 38.9 14 0.00048 25.7 1.8 20 131-150 68-87 (109)
31 2kj5_A Phage integrase; GFT PS 38.2 60 0.0021 21.3 4.8 49 81-157 47-98 (116)
32 1opc_A OMPR, OMPRC; transcript 37.8 14 0.00046 25.9 1.6 20 131-150 70-89 (110)
33 2khv_A Phage integrase; soluti 37.3 76 0.0026 20.9 5.2 51 78-157 40-94 (106)
34 1h1j_S THO1 protein; SAP domai 36.0 26 0.00088 23.5 2.6 26 130-155 25-50 (51)
35 1z1b_A Integrase; protein-DNA 35.5 57 0.002 25.6 5.0 61 66-157 104-166 (356)
36 1gxq_A PHOB, phosphate regulon 35.4 20 0.00068 24.9 2.1 19 131-149 70-88 (106)
37 1h6z_A Pyruvate phosphate diki 34.6 17 0.00057 36.3 2.1 25 151-175 682-709 (913)
38 2a25_A Ubiquitin ligase SIAH1; 34.6 8.1 0.00028 30.8 -0.1 34 103-143 25-62 (193)
39 2kj9_A Integrase; DNA_BRE_C su 33.6 81 0.0028 21.4 5.0 50 81-157 51-102 (118)
40 2hwv_A DNA-binding response re 31.9 20 0.00069 26.0 1.7 20 131-150 82-101 (121)
41 3q9v_A DNA-binding response re 28.2 40 0.0014 25.0 2.8 19 131-149 99-117 (133)
42 2kzy_A ZNF216-A20, zfand5 prot 27.8 29 0.001 24.6 1.9 21 104-124 14-34 (62)
43 2e1f_A Werner syndrome ATP-dep 27.2 48 0.0016 24.3 3.1 23 158-180 14-36 (103)
44 2pjp_A Selenocysteine-specific 26.9 25 0.00086 25.4 1.5 38 66-104 68-111 (121)
45 2dkz_A Hypothetical protein LO 26.3 31 0.0011 25.8 1.9 21 77-97 10-30 (84)
46 4a8e_A XER A, probable tyrosin 26.3 1E+02 0.0035 23.1 4.8 51 63-148 34-84 (292)
47 1am7_A Lysozyme; glycosidase, 25.5 42 0.0014 26.9 2.7 17 134-150 136-152 (158)
48 4b4t_W RPN10, 26S proteasome r 24.4 16 0.00055 31.1 0.0 40 142-181 213-252 (268)
49 2osa_A N-chimaerin; RHO-GAP, G 24.3 59 0.002 25.2 3.2 38 131-169 50-94 (202)
50 3cw1_L U1 small nuclear ribonu 24.1 1E+02 0.0035 22.3 4.3 18 158-175 31-48 (77)
51 2l4d_A SCO1/SENC family protei 24.0 34 0.0011 22.8 1.6 27 75-101 74-100 (110)
52 2k6l_A Putative uncharacterize 23.7 65 0.0022 22.2 3.0 35 134-168 12-48 (51)
53 1yx4_A 26S proteasome non-ATPa 23.5 33 0.0011 27.5 1.7 32 146-177 31-62 (132)
54 2c7n_A Rabex-5, GEF 1, RAB gua 23.1 27 0.00092 25.7 1.0 23 105-127 18-40 (74)
55 2lna_A AFG3-like protein 2; st 22.9 65 0.0022 23.5 3.1 27 126-152 60-86 (99)
56 1v5r_A Growth-arrest-specific 22.8 13 0.00045 28.4 -0.7 14 65-78 63-76 (97)
57 2gpe_A Bifunctional protein PU 22.6 46 0.0016 20.6 2.0 35 134-170 12-46 (52)
58 3tfg_A ALR2278 protein; heme-b 22.6 27 0.00094 27.4 1.1 81 63-148 64-157 (189)
59 3a2a_A Voltage-gated hydrogen 22.2 49 0.0017 23.4 2.1 22 133-154 37-58 (58)
60 3qfs_A CPR, P450R, NADPH--cyto 22.1 44 0.0015 30.0 2.4 45 86-130 108-152 (458)
61 3iug_A RHO/CDC42/RAC GTPase-ac 21.9 1.1E+02 0.0037 24.2 4.4 33 135-168 65-105 (229)
62 2rhf_A DNA helicase RECQ; HRDC 20.8 72 0.0025 21.4 2.8 22 159-180 5-26 (77)
63 2jrb_A ORF 1 protein; RNA bind 20.8 44 0.0015 24.9 1.8 23 55-77 16-38 (88)
64 4fdi_A N-acetylgalactosamine-6 20.7 52 0.0018 28.6 2.5 18 132-149 234-251 (502)
65 2lep_A Rhomboid protease GLPG 25.2 22 0.00076 24.3 0.0 15 153-167 8-22 (69)
No 1
>1xo0_A Recombinase CRE; CRE recombinase, holliday junction, recombination,complex (recombinase/DNA), hydrolase, ligase/DNA complex; 2.00A {Enterobacteria phage P1} SCOP: a.60.9.1 d.163.1.1 PDB: 3crx_A* 1kbu_A 1ma7_A 1q3u_A* 1q3v_A* 3mgv_A* 1ouq_A* 1nzb_A* 2crx_A* 1xns_A 5crx_A* 1f44_A* 2hof_A 2hoi_A 4crx_A* 1drg_A 3c29_A* 3c28_A 1crx_A* 1pvr_A ...
Probab=91.80 E-value=0.45 Score=36.45 Aligned_cols=72 Identities=14% Similarity=0.168 Sum_probs=53.2
Q ss_pred HhhhhhhhHHHHHHHhcCCCCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHH
Q 037966 60 NQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGR 139 (205)
Q Consensus 60 sQKRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGR 139 (205)
.+-+++|+.|..|+.... +.+...+..||.+|+.++-+.| .+..++...+..
T Consensus 24 ~~y~~~l~~~~~~~~~~~--~~~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~ 75 (324)
T 1xo0_A 24 KMLLSVCRSWAAWCKLNN--RKWFPAEPEDVRDYLLYLQARG--------------------------LAVKTIQQHLGQ 75 (324)
T ss_dssp HHHHHHHHHHHHHHHHHT--CCCSSCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC--CCCCCCCHHHHHHHHHHHHhcC--------------------------cCHHHHHHHHHH
Confidence 344678899999998763 2456678999999999875322 245688999999
Q ss_pred HHHHHHHhCCC-CCCCcchhh
Q 037966 140 LRAAFEEHGGK-PEANPFGAR 159 (205)
Q Consensus 140 LRAafEE~Gg~-PE~NPF~ar 159 (205)
|++.|+-.+.. +..||+..-
T Consensus 76 l~~~~~~~~~~~~~~np~~~~ 96 (324)
T 1xo0_A 76 LNMLHRRSGLPRPSDSNAVSL 96 (324)
T ss_dssp HHHHHHHHTSCCGGGSHHHHH
T ss_pred HHHHHHHcCCCCCCcCHHHHH
Confidence 99999988653 356887543
No 2
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=85.87 E-value=2.9 Score=28.85 Aligned_cols=69 Identities=10% Similarity=0.058 Sum_probs=47.0
Q ss_pred hhhhhhHHHHHHHhcCCCCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHHH
Q 037966 62 KRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLR 141 (205)
Q Consensus 62 KRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLR 141 (205)
-+++++.|..||.... -..+...+..||.+|+.|+-..| .+..|+-..+.-||
T Consensus 32 Y~~~l~~f~~~l~~~~-~~~l~~it~~~i~~y~~~l~~~~--------------------------~s~~Ti~~~ls~lr 84 (117)
T 3nrw_A 32 FRYRLKHFVEWAEERD-ITAMRELTGWKLDEYETFRRGSD--------------------------VSPATLNGEMQTLK 84 (117)
T ss_dssp HHHHHHHHHHHHHHTT-CCSGGGCCHHHHHHHHHHHHTSS--------------------------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-CCChHHCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHH
Confidence 3567888889987632 12566778899999998874321 24457778888888
Q ss_pred HHHHHh--CCCCCCCcch
Q 037966 142 AAFEEH--GGKPEANPFG 157 (205)
Q Consensus 142 AafEE~--Gg~PE~NPF~ 157 (205)
+.|.-. -|--+.||+.
T Consensus 85 ~f~~~l~~~g~i~~nP~~ 102 (117)
T 3nrw_A 85 NWLEYLARIDVVDEDLPE 102 (117)
T ss_dssp HHHHHHHHTTSSCTTSGG
T ss_pred HHHHHHHHcCCcccCHHH
Confidence 887643 2445678874
No 3
>1a0p_A Site-specific recombinase XERD; DNA binding, DNA recombination; 2.50A {Escherichia coli} SCOP: a.60.9.1 d.163.1.1
Probab=80.69 E-value=3.9 Score=30.75 Aligned_cols=70 Identities=20% Similarity=0.174 Sum_probs=47.9
Q ss_pred HhhhhhhhHHHHHHHhcCCCCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHH
Q 037966 60 NQKRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGR 139 (205)
Q Consensus 60 sQKRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGR 139 (205)
..-++.++.|..|+... .+.+..-+..||.+|+.++-.. ..+..++...+.-
T Consensus 25 ~~y~~~l~~~~~~~~~~--~~~~~~i~~~~i~~~~~~l~~~--------------------------~~s~~t~~~~~~~ 76 (290)
T 1a0p_A 25 NAYRRDLSMMVEWLHHR--GLTLATAQSDDLQALLAERLEG--------------------------GYKATSSARLLSA 76 (290)
T ss_dssp HHHHHHHHHHHHHHHHT--SCCTTTCCHHHHHHHHHSCC---------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--CCChhhCCHHHHHHHHHHHHhc--------------------------CCCHHHHHHHHHH
Confidence 34456788899999887 3467778899999999876421 1245678888999
Q ss_pred HHHHHHHhC--CCCCCCcch
Q 037966 140 LRAAFEEHG--GKPEANPFG 157 (205)
Q Consensus 140 LRAafEE~G--g~PE~NPF~ 157 (205)
|+++|+..- +..+.|||.
T Consensus 77 l~~~~~~~~~~~~i~~np~~ 96 (290)
T 1a0p_A 77 VRRLFQYLYREKFREDDPSA 96 (290)
T ss_dssp HHHHHHHHHHTTSSSSCTTS
T ss_pred HHHHHHHHHhCCCccCChhh
Confidence 999987542 345678985
No 4
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}
Probab=78.11 E-value=1.7 Score=41.79 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhCCCC-------------------------CCCcc-hhhHHHHHHH----HHHHHHhhh
Q 037966 137 IGRLRAAFEEHGGKP-------------------------EANPF-GARAVRLYLR----EVRDSQAKA 175 (205)
Q Consensus 137 IGRLRAafEE~Gg~P-------------------------E~NPF-~araVRlYLR----eVRd~QAkA 175 (205)
..-++.+++.++++| |.||| +.|.+|+||. |+=++|.+|
T Consensus 561 ~~~~~~~~~~~~~~pv~iR~~D~~~~~~~~~~gg~~~~~~E~NP~lG~Rg~r~~~~~p~~~~~~~ql~A 629 (794)
T 2ols_A 561 AEGVATLAASVYPRKTIVRMSDFKSNEYANLVGGNVYEPHEENPMLGFRGAARYVADNFKDCFALECKA 629 (794)
T ss_dssp HHHHHHHHHHHTTSEEEEECCCCCHHHHHTSBTCGGGSCCCSCGGGSSCTHHHHHCTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCCchhhHHHhcCccccccccCCCcCccceeeeeccchhHHHHHHHHH
Confidence 356677778777764 78999 8999999998 566666554
No 5
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=74.73 E-value=10 Score=23.63 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=42.6
Q ss_pred hhhhHHHHHHHhcCCCCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHHHHH
Q 037966 64 RDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAA 143 (205)
Q Consensus 64 rdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAa 143 (205)
..++.|..|+.+ +.|..-+..||.+|+.++...| +..++...+..||++
T Consensus 29 ~~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~~~ 77 (103)
T 2oxo_A 29 SKIKAIRRGLPD----APLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLSDA 77 (103)
T ss_dssp HHHHHHHHHSCS----CBGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc----CchhhCCHHHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHHH
Confidence 445556666643 4567778999999998774211 235788889999999
Q ss_pred HHH---hCCCCCCCcch
Q 037966 144 FEE---HGGKPEANPFG 157 (205)
Q Consensus 144 fEE---~Gg~PE~NPF~ 157 (205)
|+- .|. -+.||+.
T Consensus 78 ~~~a~~~~~-i~~nP~~ 93 (103)
T 2oxo_A 78 FREAIAEGH-ITTNHVA 93 (103)
T ss_dssp HHHHHHTTS-CSSCTTC
T ss_pred HHHHHHcCC-CCCChHh
Confidence 874 344 4679985
No 6
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}
Probab=74.31 E-value=3.3 Score=40.70 Aligned_cols=24 Identities=42% Similarity=0.657 Sum_probs=20.4
Q ss_pred CCCcc-hhhHHHHHHH--HHHHHHhhh
Q 037966 152 EANPF-GARAVRLYLR--EVRDSQAKA 175 (205)
Q Consensus 152 E~NPF-~araVRlYLR--eVRd~QAkA 175 (205)
|.||| |.|++|+||. |+=++|.+|
T Consensus 683 E~NPmLG~RGiR~~l~~peif~~Q~rA 709 (913)
T 2x0s_A 683 ELNPMLGHRGCRLGITYPEIYNMQVRA 709 (913)
T ss_dssp CSSGGGSSCHHHHHHHSCHHHHHHHHH
T ss_pred CCChhhhccchhhhccCcHHHHHHHHH
Confidence 67999 9999999998 777777765
No 7
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=72.54 E-value=8.6 Score=25.16 Aligned_cols=63 Identities=17% Similarity=0.266 Sum_probs=43.2
Q ss_pred hhhhHHHHHHHhcCCCCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHHHHH
Q 037966 64 RDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAA 143 (205)
Q Consensus 64 rdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAa 143 (205)
+.++.|..|+.+ +.|..-+..||.+|+.++.+ ..+..++..++..||++
T Consensus 30 ~~~~~~~~~~g~----~~l~~it~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~l~~~ 78 (110)
T 2khq_A 30 SAYKHIKDHFRH----KLLKDIKRTEYQKFLNEYGL---------------------------THSYETIRKLNSYIRNA 78 (110)
T ss_dssp HHHHHHHHHCSS----CBGGGCCHHHHHHHHHHHHH---------------------------HSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCc----CCHhhCCHHHHHHHHHHHHH---------------------------HhhHHHHHHHHHHHHHH
Confidence 344557777653 45677789999999987742 11346788899999999
Q ss_pred HHHh--CCCCCCCcch
Q 037966 144 FEEH--GGKPEANPFG 157 (205)
Q Consensus 144 fEE~--Gg~PE~NPF~ 157 (205)
|+-. -|--+.||+.
T Consensus 79 ~~~a~~~~~i~~NP~~ 94 (110)
T 2khq_A 79 FDDAIHEGYVIKNPTY 94 (110)
T ss_dssp HHHHHHTTCCCCCGGG
T ss_pred HHHHHHCCCcccCccc
Confidence 9742 1334689984
No 8
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=67.65 E-value=12 Score=24.64 Aligned_cols=53 Identities=15% Similarity=0.105 Sum_probs=37.0
Q ss_pred CCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHhC--CCCCCCcc
Q 037966 79 PLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEHG--GKPEANPF 156 (205)
Q Consensus 79 PlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAafEE~G--g~PE~NPF 156 (205)
-+.|..-+..||.+|+.++-..| .+..++...+..||++|+..= |--+.||+
T Consensus 47 ~~~l~~It~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l~~~~~~A~~~~~i~~nP~ 100 (117)
T 2kkp_A 47 SIPLKKLQPADIQRLYASKLESG--------------------------LSPTRVRYIHVVLHEAMSQARESGLLLQNPT 100 (117)
T ss_dssp TSCTTTCCHHHHHHHHHHHHHTT--------------------------CCHHHHHHHHHHHHHHHHHHHTTTSCSSCGG
T ss_pred ceEHHHCCHHHHHHHHHHHHHcC--------------------------CCHHHHHHHHHHHHHHHHHHHHCCCcccCcc
Confidence 35567778899999998764211 244688889999999997431 23457998
Q ss_pred h
Q 037966 157 G 157 (205)
Q Consensus 157 ~ 157 (205)
.
T Consensus 101 ~ 101 (117)
T 2kkp_A 101 E 101 (117)
T ss_dssp G
T ss_pred c
Confidence 4
No 9
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=64.99 E-value=2.8 Score=31.27 Aligned_cols=21 Identities=38% Similarity=0.653 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHhCCCCC
Q 037966 132 SLDALIGRLRAAFEEHGGKPE 152 (205)
Q Consensus 132 SLDALIGRLRAafEE~Gg~PE 152 (205)
+||..|.|||..+++.++.|+
T Consensus 76 ~l~v~I~rLRkKL~~~~~~~~ 96 (120)
T 2zxj_A 76 TVDVTIRRLREKIEDDPSHPE 96 (120)
T ss_dssp HHHHHHHHHHHHHCSSTTSCS
T ss_pred ChHHHHHHHHHHHhhCCCCCC
Confidence 799999999999998876654
No 10
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A*
Probab=63.65 E-value=10 Score=32.73 Aligned_cols=34 Identities=41% Similarity=0.772 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHhCCCC---------------------CCCcc-hhhHHHHHHHH
Q 037966 134 DALIGRLRAAFEEHGGKP---------------------EANPF-GARAVRLYLRE 167 (205)
Q Consensus 134 DALIGRLRAafEE~Gg~P---------------------E~NPF-~araVRlYLRe 167 (205)
+...--++.+++.++++| |.||| +.|+||+||..
T Consensus 62 ~~q~~~~~~~~~~~~~~~v~VR~~d~g~dk~~~~~~~~~E~nP~LG~RgiR~~l~~ 117 (324)
T 2xz9_A 62 EEQFEAYKEVVEKMGGRPVTIRTLDIGGDKELPYLDMPKEMNPFLGYRAIRLCLDR 117 (324)
T ss_dssp HHHHHHHHHHHHHTTTSCEEEECCCCBGGGCCTTTCCCCCSCGGGSSBTHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCceEEEeCCCCcchhhhhhccccccCcccccceeeeeccc
Confidence 444446677777766652 67998 99999999983
No 11
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=63.38 E-value=4.7 Score=27.73 Aligned_cols=26 Identities=31% Similarity=0.704 Sum_probs=21.4
Q ss_pred cccCcccccccCCCCcCCCCCCCCCC
Q 037966 98 DQFGKTKVHTQLCPFFGHPNPPAPCP 123 (205)
Q Consensus 98 DqfGKTkVH~~~C~ffG~p~ppapC~ 123 (205)
|+.|-.|--..+|+|||.|.-..=|.
T Consensus 11 ~~~gt~kCRk~GC~fFGTpen~GFCT 36 (48)
T 2eqe_A 11 DRTGTSKCRKAGCVYFGTPENKGFCT 36 (48)
T ss_dssp SSCCSSBCSSTTCCSBCCTTTTTCCH
T ss_pred cccccchhhhcCCCcccCcccCceee
Confidence 67788888999999999998766553
No 12
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*
Probab=62.71 E-value=6 Score=38.99 Aligned_cols=25 Identities=44% Similarity=0.675 Sum_probs=21.9
Q ss_pred CCCCcc-hhhHHHHHHH--HHHHHHhhh
Q 037966 151 PEANPF-GARAVRLYLR--EVRDSQAKA 175 (205)
Q Consensus 151 PE~NPF-~araVRlYLR--eVRd~QAkA 175 (205)
-|.||| |.|.+|+||. |+=++|.+|
T Consensus 662 ~E~NP~LG~RG~Rl~l~~peif~~QlrA 689 (876)
T 1vbg_A 662 SEVNPMLGFRGCRLGISYPELTEMQARA 689 (876)
T ss_dssp CCSCGGGSSCTHHHHHHSHHHHHHHHHH
T ss_pred cCCCCcccccccccccCChHHHHHHHHH
Confidence 589999 8999999998 888888776
No 13
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=61.36 E-value=4.1 Score=28.13 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHHHHhCCCC
Q 037966 131 GSLDALIGRLRAAFEEHGGKP 151 (205)
Q Consensus 131 GSLDALIGRLRAafEE~Gg~P 151 (205)
.+||.+|-|||..+++.++.+
T Consensus 67 ~~l~~~I~rLRkkL~~~~~~~ 87 (102)
T 3zq7_A 67 HYLRIYMGHLRQKLEQDPARP 87 (102)
T ss_dssp HHHHHHHHHHHHHHCSSTTSC
T ss_pred chHHHHHHHHHHHhhcCCCCC
Confidence 379999999999998876543
No 14
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=61.24 E-value=14 Score=27.71 Aligned_cols=65 Identities=18% Similarity=0.136 Sum_probs=45.8
Q ss_pred hhhhhhHHHHHHHhcCCCCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHHH
Q 037966 62 KRRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLR 141 (205)
Q Consensus 62 KRrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLR 141 (205)
-++.++.|..||.+. .+..-+..||.+|+.++-+.| +..++...+.-|+
T Consensus 27 y~~~~~~~~~~~~~~----~~~~i~~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~ 75 (283)
T 1z19_A 27 YMSKIKAIRRGLPDA----PLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLS 75 (283)
T ss_dssp HHHHHHHHHHHSCSC----BGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC----cHHhCCHHHHHHHHHHHhhcC---------------------------chhhHHHHHHHHH
Confidence 345677888888653 566778999999998875321 2357888889999
Q ss_pred HHHHHhC--CCCCCCcch
Q 037966 142 AAFEEHG--GKPEANPFG 157 (205)
Q Consensus 142 AafEE~G--g~PE~NPF~ 157 (205)
++|+..- +.-+.|||.
T Consensus 76 ~~~~~a~~~~~i~~np~~ 93 (283)
T 1z19_A 76 DAFREAIAEGHITTNHVA 93 (283)
T ss_dssp HHHHHHHHTTSCSCCTTT
T ss_pred HHHHHHHHCCCCCcCchh
Confidence 9988531 334578874
No 15
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=60.58 E-value=34 Score=23.05 Aligned_cols=51 Identities=22% Similarity=0.317 Sum_probs=35.7
Q ss_pred CccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHh--CCCCCCCcch
Q 037966 80 LSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEH--GGKPEANPFG 157 (205)
Q Consensus 80 lsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAafEE~--Gg~PE~NPF~ 157 (205)
+.|..-+..||.+|+..+.+.| +..++..++.-||++|+-. -|--+.||+.
T Consensus 45 ~~l~~It~~~i~~~~~~l~~~~---------------------------s~~t~~~~~~~l~~~~~~Av~~~~i~~NP~~ 97 (118)
T 2kj8_A 45 LEIQDIEPMQLLEVIRRFEDRG---------------------------AMERANKARRRCGEVFRYAIVTGRAKYNPAP 97 (118)
T ss_dssp SBTTSCCHHHHHHHHHHHHTTT---------------------------CHHHHHHHHHHHHHHHHHHHHTTSCSCCSHH
T ss_pred CcHHHCCHHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHHHHHHHHHHcCCcccCcHH
Confidence 4566778899999998654211 2357888999999998742 2334689974
No 16
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=60.55 E-value=5 Score=26.64 Aligned_cols=51 Identities=16% Similarity=0.321 Sum_probs=36.5
Q ss_pred CccccccchhhhHHHHhhcc-cCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCc
Q 037966 80 LSLERCSGAHVLEFLRYLDQ-FGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE---HGGKPEANP 155 (205)
Q Consensus 80 lsL~~csg~hVleFLrylDq-fGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAafEE---~Gg~PE~NP 155 (205)
+.|...+..+|.+|+.||-. .| .+-.|+...+.-||++|+- .|. -+.||
T Consensus 47 ~~l~~it~~~i~~~~~~l~~~~~--------------------------~s~~Ti~~~~~~lr~~~~~a~~~~~-i~~nP 99 (112)
T 2key_A 47 LQFHELTEDFLRDYLIYMKKTLC--------------------------NADSTAQRNLSTIKIYVSAAIKKGY-MENDP 99 (112)
T ss_dssp CCTTTCCHHHHHHHHHHHHHTSC--------------------------CCHHHHHHHHHHHHHHHHHHHHTTS-CCSCH
T ss_pred CCHHHcCHHHHHHHHHHHHHccC--------------------------cchhhHHHHHHHHHHHHHHHHHCCC-cccCC
Confidence 35667788999999998754 22 2345888899999999874 344 35689
Q ss_pred ch
Q 037966 156 FG 157 (205)
Q Consensus 156 F~ 157 (205)
+.
T Consensus 100 ~~ 101 (112)
T 2key_A 100 FK 101 (112)
T ss_dssp HH
T ss_pred cc
Confidence 74
No 17
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A
Probab=59.92 E-value=11 Score=35.45 Aligned_cols=42 Identities=36% Similarity=0.587 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHHHHhCCC---------------------CCCCcc-hhhHHHHHHH--HHHHHHhh
Q 037966 133 LDALIGRLRAAFEEHGGK---------------------PEANPF-GARAVRLYLR--EVRDSQAK 174 (205)
Q Consensus 133 LDALIGRLRAafEE~Gg~---------------------PE~NPF-~araVRlYLR--eVRd~QAk 174 (205)
.+...--++.+++.++++ .|.||| |.|+||+||. ++=+.|.+
T Consensus 312 ~~~q~~~~~~~~~~~~g~pv~VR~lD~g~Dk~l~~~~~~~E~NP~LG~RgiRl~l~~p~if~~Qlr 377 (572)
T 2wqd_A 312 EEEQFEAYKEVLEAMGGKRVVVRTLDIGGDKELSYLNLPEEMNPFLGYRAIRLSLAQQDIFRPQLR 377 (572)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCCCCTTSCCTTSCCCCCSCGGGSSCHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcEEEEECCCCCccchhhccCcccCCchhhhhhhhhcccChHHHHHHHH
Confidence 455666677777877665 378998 8999999995 44444443
No 18
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=58.74 E-value=38 Score=22.70 Aligned_cols=51 Identities=18% Similarity=0.240 Sum_probs=35.8
Q ss_pred CCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCc
Q 037966 79 PLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE---HGGKPEANP 155 (205)
Q Consensus 79 PlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAafEE---~Gg~PE~NP 155 (205)
-+.|..-+..||.+||..+...| +..++..++.-||++|+- .|. -+.||
T Consensus 45 ~~~l~~It~~~i~~~~~~l~~~~---------------------------s~~t~~~~~~~l~~~~~~A~~~~~-i~~NP 96 (121)
T 2kkv_A 45 SSDIRQLKTSHLLAPIKEVDTSG---------------------------KHDVAQRLQQRVTAIMRYAVQNDY-IDSNP 96 (121)
T ss_dssp TSCTTCCCSGGGHHHHHHHHHTT---------------------------THHHHHHHHHHHHHHHHHHHHTTS-SCSCS
T ss_pred CCCHHHcCHHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHHHHHHHHHHcCC-cccCc
Confidence 35567778899999988664211 335788889999999874 343 45899
Q ss_pred ch
Q 037966 156 FG 157 (205)
Q Consensus 156 F~ 157 (205)
+.
T Consensus 97 ~~ 98 (121)
T 2kkv_A 97 AS 98 (121)
T ss_dssp CS
T ss_pred HH
Confidence 74
No 19
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=58.15 E-value=4.5 Score=29.05 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=17.2
Q ss_pred chhHHHHHHHHHHHHHhCCCC
Q 037966 131 GSLDALIGRLRAAFEEHGGKP 151 (205)
Q Consensus 131 GSLDALIGRLRAafEE~Gg~P 151 (205)
.+||.+|.|||..+++.+..+
T Consensus 75 ~~l~~~I~rLRkkL~~~~~~~ 95 (120)
T 2z9m_A 75 RTVDVTIRRLREKIEDDPSHP 95 (120)
T ss_dssp HHHHHHHHHHHHHHCSSTTSC
T ss_pred chHHHHHHHHHHHhhcCCCCC
Confidence 479999999999998766543
No 20
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A
Probab=57.27 E-value=7.2 Score=38.44 Aligned_cols=25 Identities=40% Similarity=0.613 Sum_probs=21.9
Q ss_pred CCCCcc-hhhHHHHHHH--HHHHHHhhh
Q 037966 151 PEANPF-GARAVRLYLR--EVRDSQAKA 175 (205)
Q Consensus 151 PE~NPF-~araVRlYLR--eVRd~QAkA 175 (205)
-|.||| |.|.+|+||. |+=++|.+|
T Consensus 655 ~E~NP~LG~RG~Rl~l~~peif~~QlrA 682 (873)
T 1kbl_A 655 HEFNPMMGHRGCRLAVTYPEIAKMQTRA 682 (873)
T ss_dssp CCSCGGGSSCTHHHHHHCHHHHHHHHHH
T ss_pred cCCCCCcccceeccccCChHHHHHHHHH
Confidence 589999 8999999998 888888776
No 21
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=56.67 E-value=38 Score=22.07 Aligned_cols=50 Identities=10% Similarity=0.112 Sum_probs=36.2
Q ss_pred CccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCcc
Q 037966 80 LSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE---HGGKPEANPF 156 (205)
Q Consensus 80 lsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAafEE---~Gg~PE~NPF 156 (205)
+.|..-+..||.+|+.++.+ ..+..++..++..||++|+- .|. -+.||+
T Consensus 39 ~~l~~It~~~i~~~~~~l~~---------------------------~~s~~t~~~~~~~lr~~~~~A~~~~~-i~~nP~ 90 (111)
T 2kiw_A 39 KPIQTIKKHDYQRFVDDISA---------------------------QYSKNYVDSIVASTNMIFKYAYDTRL-IKAMPS 90 (111)
T ss_dssp SCGGGCCHHHHHHHHHHHHT---------------------------TSCHHHHHHHHHHHHHHHHHHHHTTS-CSCCTT
T ss_pred CcHHHcCHHHHHHHHHHHHh---------------------------hhCHHHHHHHHHHHHHHHHHHHHhCC-hhhCcc
Confidence 45667789999999987741 12346788899999999874 343 468998
Q ss_pred h
Q 037966 157 G 157 (205)
Q Consensus 157 ~ 157 (205)
.
T Consensus 91 ~ 91 (111)
T 2kiw_A 91 E 91 (111)
T ss_dssp T
T ss_pred c
Confidence 4
No 22
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=56.59 E-value=3.9 Score=30.94 Aligned_cols=15 Identities=53% Similarity=0.811 Sum_probs=11.3
Q ss_pred HhhhcCCchhhhhcC
Q 037966 172 QAKARGISYEKKKRK 186 (205)
Q Consensus 172 QAkARgi~y~kkkrk 186 (205)
+-|.-||+|-+|||+
T Consensus 39 ~~KGLGIsYgRkkRr 53 (86)
T 1tac_A 39 ITKGLGISYGRKKRR 53 (86)
T ss_dssp SSTTSSSSSCCCSGG
T ss_pred ccCCCceEecccccc
Confidence 468899999866553
No 23
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=54.47 E-value=23 Score=23.40 Aligned_cols=52 Identities=17% Similarity=0.290 Sum_probs=36.9
Q ss_pred CCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCc
Q 037966 79 PLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE---HGGKPEANP 155 (205)
Q Consensus 79 PlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAafEE---~Gg~PE~NP 155 (205)
-+.|..-+..||.+|+.++-..| .+..++...+..||++|+- .|. -+.||
T Consensus 45 ~~~l~~it~~~i~~~~~~l~~~g--------------------------~s~~t~~~~~~~l~~~~~~a~~~~~-i~~nP 97 (118)
T 2kd1_A 45 NIKLAKLTSLHMQNYVNSLRDEG--------------------------LKRGTIEKIIKVIRNSLEHAIDLEL-ITKNV 97 (118)
T ss_dssp SSBGGGCCHHHHHHHHHHHHHHT--------------------------CCHHHHHHHHHHHHHHHHHHHHTTS-CSSCT
T ss_pred cCCHHhCCHHHHHHHHHHHHHcC--------------------------CCHHHHHHHHHHHHHHHHHHHHcCC-cccCc
Confidence 35677888999999998764311 2446788899999999874 343 45799
Q ss_pred ch
Q 037966 156 FG 157 (205)
Q Consensus 156 F~ 157 (205)
+.
T Consensus 98 ~~ 99 (118)
T 2kd1_A 98 AA 99 (118)
T ss_dssp TT
T ss_pred cc
Confidence 73
No 24
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A
Probab=53.22 E-value=12 Score=35.03 Aligned_cols=34 Identities=32% Similarity=0.543 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHhCCC---------------------CCCCcc-hhhHHHHHHH
Q 037966 133 LDALIGRLRAAFEEHGGK---------------------PEANPF-GARAVRLYLR 166 (205)
Q Consensus 133 LDALIGRLRAafEE~Gg~---------------------PE~NPF-~araVRlYLR 166 (205)
.+...--++.+++.++++ .|.||| |.|+||+||.
T Consensus 310 ~~~q~~~~~~~~~~~~g~pv~VRtlD~g~Dk~l~~~~~~~E~NP~LG~RgiRl~l~ 365 (575)
T 2hwg_A 310 EEEQFAAYKAVAEACGSQAVIVRTMDIGGDKELPYMNFPKEENPFLGWRAIRIAMD 365 (575)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEECCCCSSSCCCGGGCCCCCSCGGGSSCTHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCceEEEeCCCCCccchhhccCCCCCCccccchheeeccc
Confidence 455666677788877665 378998 8999999997
No 25
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=49.01 E-value=8.5 Score=26.19 Aligned_cols=18 Identities=28% Similarity=0.418 Sum_probs=16.0
Q ss_pred chhHHHHHHHHHHHHHhC
Q 037966 131 GSLDALIGRLRAAFEEHG 148 (205)
Q Consensus 131 GSLDALIGRLRAafEE~G 148 (205)
.+||.+|-|||..+++.|
T Consensus 61 ~~l~~~I~rLRkkL~~~~ 78 (96)
T 3rjp_A 61 NVVDVYIRYLRGKIDIPG 78 (96)
T ss_dssp HHHHHHHHHHHHHHCCTT
T ss_pred chHHHHHHHHHHHhcccC
Confidence 489999999999998776
No 26
>3mi9_C Protein TAT; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Human immunodeficiency virus type 1} PDB: 3mia_C* 1jfw_A 1tbc_A 1tiv_A 1k5k_A
Probab=46.89 E-value=4.6 Score=30.54 Aligned_cols=15 Identities=60% Similarity=0.731 Sum_probs=9.7
Q ss_pred HHhhhcCCchhhhhc
Q 037966 171 SQAKARGISYEKKKR 185 (205)
Q Consensus 171 ~QAkARgi~y~kkkr 185 (205)
+..|.-||+|-+|||
T Consensus 38 Fl~KGLGIsYgRkkR 52 (86)
T 3mi9_C 38 FITKALGISYGRKKR 52 (86)
T ss_dssp HHHTTSCCCSCC---
T ss_pred hcccCCccccccccc
Confidence 356899999986655
No 27
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=42.15 E-value=19 Score=25.91 Aligned_cols=20 Identities=40% Similarity=0.700 Sum_probs=17.5
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 037966 131 GSLDALIGRLRAAFEEHGGK 150 (205)
Q Consensus 131 GSLDALIGRLRAafEE~Gg~ 150 (205)
.+||.+|-|||..+++.+..
T Consensus 80 ~tl~~~I~rLRkkL~~~~~~ 99 (115)
T 2k4j_A 80 KSIDVIIGRLRSKIEKNPKQ 99 (115)
T ss_dssp HHHHHHHHHHHHHHHHSSCC
T ss_pred hHHHHHHHHHHHHhhcCCCC
Confidence 58999999999999987654
No 28
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=40.16 E-value=6 Score=34.30 Aligned_cols=21 Identities=33% Similarity=0.436 Sum_probs=0.0
Q ss_pred CCCCcchhhHHHHHHHHHHHHHhhhcCCch
Q 037966 151 PEANPFGARAVRLYLREVRDSQAKARGISY 180 (205)
Q Consensus 151 PE~NPF~araVRlYLReVRd~QAkARgi~y 180 (205)
++.+| -|=.-|.=.+ | -||+|
T Consensus 312 ~~~~~-------~~~~~~~~~~-~-~~~~~ 332 (358)
T 2pk2_A 312 QEARP-------NYHCQLCFLR-S-LGIDY 332 (358)
T ss_dssp ------------------------------
T ss_pred CCCcc-------ceecHHHhcc-c-cceee
Confidence 55666 3433343333 6 99999
No 29
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=38.90 E-value=51 Score=21.16 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=20.7
Q ss_pred hcchhHHHHHHHHHHHHHh--CCCCCCCcch
Q 037966 129 AWGSLDALIGRLRAAFEEH--GGKPEANPFG 157 (205)
Q Consensus 129 AWGSLDALIGRLRAafEE~--Gg~PE~NPF~ 157 (205)
+..++..++..||++|+-. -|--+.||+.
T Consensus 62 s~~t~~~~~~~l~~~~~~A~~~~~i~~NP~~ 92 (108)
T 2kob_A 62 AKNTLKAIRNTASQIFRLAIENRAIDFNPAD 92 (108)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTSSSSCGGG
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCcccCccc
Confidence 4467888999999998742 2334689984
No 30
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=38.89 E-value=14 Score=25.73 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 037966 131 GSLDALIGRLRAAFEEHGGK 150 (205)
Q Consensus 131 GSLDALIGRLRAafEE~Gg~ 150 (205)
.+||.+|-|||..+++.++.
T Consensus 68 ~~l~~~I~rLRkkL~~~~~~ 87 (109)
T 2hqn_A 68 NVIEVAINQIRQKMDKPLGI 87 (109)
T ss_dssp THHHHHHHHHHHHTTTTSCC
T ss_pred chHHHHHHHHHHHhccccCC
Confidence 58999999999999876443
No 31
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=38.19 E-value=60 Score=21.27 Aligned_cols=49 Identities=18% Similarity=0.161 Sum_probs=33.2
Q ss_pred ccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCCCcch
Q 037966 81 SLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE---HGGKPEANPFG 157 (205)
Q Consensus 81 sL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAafEE---~Gg~PE~NPF~ 157 (205)
.|..-+..||.+|+.++-.. .+..++..++..||++|+- .| --+.||+.
T Consensus 47 ~l~~it~~~i~~~~~~l~~~---------------------------~s~~t~~~~~~~l~~~~~~A~~~~-~i~~NP~~ 98 (116)
T 2kj5_A 47 KVEDVKPRHIDDVLKAVMKR---------------------------GAPSIANDTLRWLKRMFNYAIKRH-IIEYNPAA 98 (116)
T ss_dssp BSSSCCHHHHHHHHHHHHHH---------------------------TCHHHHHHHHHHHHHHHHHHHHTT-SCSSCGGG
T ss_pred cHhhCCHHHHHHHHHHHHHc---------------------------cChHHHHHHHHHHHHHHHHHHHcC-ccccCchh
Confidence 45566788888888766421 1335788888899998873 34 34578874
No 32
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=37.79 E-value=14 Score=25.85 Aligned_cols=20 Identities=40% Similarity=0.516 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 037966 131 GSLDALIGRLRAAFEEHGGK 150 (205)
Q Consensus 131 GSLDALIGRLRAafEE~Gg~ 150 (205)
.+||.+|-|||..+++.|..
T Consensus 70 ~~l~~~I~rLRkkL~~~~~~ 89 (110)
T 1opc_A 70 RSIDVQISRLRRMVEEDPAH 89 (110)
T ss_dssp SCHHHHHHHHHHHHCSCTTS
T ss_pred chHHHHHHHHHHHhhcCCCC
Confidence 47999999999999876643
No 33
>2khv_A Phage integrase; solution structure, GFT, NESG, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=37.30 E-value=76 Score=20.89 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=35.0
Q ss_pred CCCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHH---hCCCCCC-
Q 037966 78 PPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEE---HGGKPEA- 153 (205)
Q Consensus 78 PPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAafEE---~Gg~PE~- 153 (205)
.-+.|..-+..||.+|+..+-..| + .++..+...|+++|+. .|. -+.
T Consensus 40 G~~~l~~It~~~i~~~~~~l~~~~---------------------------~-~t~~~~~~~l~~i~~~Av~~~~-i~~~ 90 (106)
T 2khv_A 40 GPLSVQDVDTKLIMKVLDPIWEQK---------------------------P-ETASRLRGRIESVLDWATVRGY-REGD 90 (106)
T ss_dssp TTSBSSSCCHHHHHHHHHHHHHHC---------------------------H-HHHHHHHHHHHHHHHHHHHHTS-SCSC
T ss_pred CCccHHHcCHHHHHHHHHHHHHhC---------------------------h-HHHHHHHHHHHHHHHHHHHcCC-cCCC
Confidence 356677788999999987442111 1 5788889999999874 354 356
Q ss_pred Ccch
Q 037966 154 NPFG 157 (205)
Q Consensus 154 NPF~ 157 (205)
||+.
T Consensus 91 NP~~ 94 (106)
T 2khv_A 91 NPAR 94 (106)
T ss_dssp CTTS
T ss_pred CchH
Confidence 9973
No 34
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=36.02 E-value=26 Score=23.50 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=17.6
Q ss_pred cchhHHHHHHHHHHHHHhCCCCCCCc
Q 037966 130 WGSLDALIGRLRAAFEEHGGKPEANP 155 (205)
Q Consensus 130 WGSLDALIGRLRAafEE~Gg~PE~NP 155 (205)
-|.=..||-||.++.++.|+.++..|
T Consensus 25 ~G~KadLieRL~~~~~~~~~~~~~~p 50 (51)
T 1h1j_S 25 GGLKNELVQRLIKDDEESKGESEVSP 50 (51)
T ss_dssp CSSHHHHHHHHHHHHHHSCC------
T ss_pred CCcHHHHHHHHHHHHHhccCCcccCC
Confidence 36667999999999999998877665
No 35
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=35.53 E-value=57 Score=25.59 Aligned_cols=61 Identities=20% Similarity=0.166 Sum_probs=38.2
Q ss_pred hhHHHHHHHhcCCCCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHHH
Q 037966 66 WNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFE 145 (205)
Q Consensus 66 Wntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAafE 145 (205)
++.|..||. -+.|..-+..||.+|+.++-..| +..++...+..|+++|+
T Consensus 104 ~~~~~~~~g----~~~l~~it~~~i~~~~~~l~~~~---------------------------~~~t~~~~~~~l~~~~~ 152 (356)
T 1z1b_A 104 IKAIRRGLP----DAPLEDITTKEIAAMLNGYIDEG---------------------------KAASAKLIRSTLSDAFR 152 (356)
T ss_dssp HHHHHHHSC----SCBGGGCCHHHHHHHHHHHHHTT---------------------------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc----CCcHHHCCHHHHHHHHHHHHHcc---------------------------cHHHHHHHHHHHHHHHH
Confidence 344444543 24566667888888888764321 23577888888998887
Q ss_pred Hh--CCCCCCCcch
Q 037966 146 EH--GGKPEANPFG 157 (205)
Q Consensus 146 E~--Gg~PE~NPF~ 157 (205)
-. -+.-+.||+.
T Consensus 153 ~a~~~~~i~~np~~ 166 (356)
T 1z1b_A 153 EAIAEGHITTNHVA 166 (356)
T ss_dssp HHHHTTSCSSCTTT
T ss_pred HHHHcCCcccChHh
Confidence 43 1334578874
No 36
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=35.37 E-value=20 Score=24.91 Aligned_cols=19 Identities=42% Similarity=0.571 Sum_probs=16.6
Q ss_pred chhHHHHHHHHHHHHHhCC
Q 037966 131 GSLDALIGRLRAAFEEHGG 149 (205)
Q Consensus 131 GSLDALIGRLRAafEE~Gg 149 (205)
.+||.+|.|||..+++.|.
T Consensus 70 ~~l~~~I~rLRkkL~~~~~ 88 (106)
T 1gxq_A 70 RTVDVHIRRLRKALEPGGH 88 (106)
T ss_dssp HHHHHHHHHHHHHHGGGTG
T ss_pred ccHHHHHHHHHHHhcccCC
Confidence 5899999999999987653
No 37
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A
Probab=34.61 E-value=17 Score=36.29 Aligned_cols=25 Identities=40% Similarity=0.617 Sum_probs=20.3
Q ss_pred CCCCcc-hhhHHHHHHH--HHHHHHhhh
Q 037966 151 PEANPF-GARAVRLYLR--EVRDSQAKA 175 (205)
Q Consensus 151 PE~NPF-~araVRlYLR--eVRd~QAkA 175 (205)
-|.||| |.|++|++|. |+=++|.+|
T Consensus 682 ~E~NPmLG~RG~Rl~l~~peif~~QlrA 709 (913)
T 1h6z_A 682 HELNPMLGHRGCRLGITYPEIYNMQVRA 709 (913)
T ss_dssp CCSSSTTSSCHHHHHHHSTTHHHHHHHH
T ss_pred CCCCCCCccchhccCCCChHHHHHHHHH
Confidence 589999 9999999996 566667665
No 38
>2a25_A Ubiquitin ligase SIAH1; protein-peptide complex, ligase; 2.20A {Homo sapiens} PDB: 2an6_A 1k2f_A
Probab=34.58 E-value=8.1 Score=30.82 Aligned_cols=34 Identities=38% Similarity=0.658 Sum_probs=16.9
Q ss_pred ccccccCCCCcCCCCCCCCCCCchh----hhcchhHHHHHHHHHH
Q 037966 103 TKVHTQLCPFFGHPNPPAPCPCPLR----QAWGSLDALIGRLRAA 143 (205)
Q Consensus 103 TkVH~~~C~ffG~p~ppapC~CPlR----QAWGSLDALIGRLRAa 143 (205)
-..|...|.|. ||.||.. .--|+++.|..-|+..
T Consensus 25 ~~~He~~C~f~-------p~~Cp~~g~~C~~~G~~~~l~~H~~~~ 62 (193)
T 2a25_A 25 KADHEELCEFR-------PYSCPCPGASCKWQGSLDAVMPHLMHQ 62 (193)
T ss_dssp ------------------CEECCCC--CCCCEECSTTHHHHHHHH
T ss_pred ccchhhcCCCC-------CccCCCCCCCCcCCCCHHHHHHHHHHH
Confidence 34699999775 7777763 2238999999999863
No 39
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=33.57 E-value=81 Score=21.42 Aligned_cols=50 Identities=10% Similarity=0.029 Sum_probs=32.9
Q ss_pred ccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHHHHHHHHh--CCCCCCCcch
Q 037966 81 SLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEEH--GGKPEANPFG 157 (205)
Q Consensus 81 sL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRAafEE~--Gg~PE~NPF~ 157 (205)
.|..-+..||.+||..+-..| +..++..++..|+++|+-. -|--+.||+.
T Consensus 51 ~l~~It~~~i~~~l~~l~~~~---------------------------~~~t~~~~~~~L~~if~~Av~~g~i~~NP~~ 102 (118)
T 2kj9_A 51 DIAELDTGDLLVPIKKIEKLG---------------------------YLEIAMRVKQYATAIMRYAVQQKMIRFNPAY 102 (118)
T ss_dssp BGGGCCHHHHHHHHHHHHTTT---------------------------CHHHHHHHHHHHHHHHHHHHHTTSSSSCHHH
T ss_pred CHHHCCHHHHHHHHHHHHHCC---------------------------CHHHHHHHHHHHHHHHHHHHHcCCcccCchH
Confidence 466677888888887543211 2357888899999998742 2334578863
No 40
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=31.94 E-value=20 Score=26.02 Aligned_cols=20 Identities=25% Similarity=0.458 Sum_probs=16.9
Q ss_pred chhHHHHHHHHHHHHHhCCC
Q 037966 131 GSLDALIGRLRAAFEEHGGK 150 (205)
Q Consensus 131 GSLDALIGRLRAafEE~Gg~ 150 (205)
.+||.+|-|||..+++.+..
T Consensus 82 ~tl~~~I~rLRkkL~~~~~~ 101 (121)
T 2hwv_A 82 RTVDVTVRRLREKIEDSPSH 101 (121)
T ss_dssp HHHHHHHHHHHHHHCSSTTS
T ss_pred cHHHHHHHHHHHHHhhcCCC
Confidence 58999999999999876643
No 41
>3q9v_A DNA-binding response regulator; response regulator protein, DNA binding protein; 1.60A {Deinococcus radiodurans}
Probab=28.17 E-value=40 Score=25.00 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHhCC
Q 037966 131 GSLDALIGRLRAAFEEHGG 149 (205)
Q Consensus 131 GSLDALIGRLRAafEE~Gg 149 (205)
.+||.+|.|||..+++.|.
T Consensus 99 ~~l~~~I~rLRkkL~~~~~ 117 (133)
T 3q9v_A 99 NVVDVHMANLRAKLRDLDG 117 (133)
T ss_dssp CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhccCC
Confidence 4799999999999998775
No 42
>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A
Probab=27.79 E-value=29 Score=24.62 Aligned_cols=21 Identities=24% Similarity=0.684 Sum_probs=16.8
Q ss_pred cccccCCCCcCCCCCCCCCCC
Q 037966 104 KVHTQLCPFFGHPNPPAPCPC 124 (205)
Q Consensus 104 kVH~~~C~ffG~p~ppapC~C 124 (205)
.+=..+|.|||.|..-..|.-
T Consensus 14 ~lC~ngCGFfGnpaT~nlCSk 34 (62)
T 2kzy_A 14 MLCSTGCGFYGNPRTNGMCSV 34 (62)
T ss_dssp CBCTTCCSSBCCTTTTSCCHH
T ss_pred cchhhCCCCcCChhhcCcCHH
Confidence 355689999999998888863
No 43
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A
Probab=27.24 E-value=48 Score=24.25 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHHhhhcCCch
Q 037966 158 ARAVRLYLREVRDSQAKARGISY 180 (205)
Q Consensus 158 araVRlYLReVRd~QAkARgi~y 180 (205)
..++---|+..|...|+.+|||-
T Consensus 14 d~~l~~~L~~wR~~~A~~~~vP~ 36 (103)
T 2e1f_A 14 QIVLYGKLVEARQKHANKMDVPP 36 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCC
Confidence 45777889999999999999984
No 44
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=26.93 E-value=25 Score=25.41 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=27.4
Q ss_pred hhHHHHHHHhcCCCCccc------cccchhhhHHHHhhcccCccc
Q 037966 66 WNTFGQYLRNHRPPLSLE------RCSGAHVLEFLRYLDQFGKTK 104 (205)
Q Consensus 66 Wntf~qyL~n~rPPlsL~------~csg~hVleFLrylDqfGKTk 104 (205)
++.+.+|+..+ +.++++ --|-+-++-+|.|+|+.|-|+
T Consensus 68 ~~~l~~~~~~~-~~it~ae~Rd~lg~sRK~ai~lLE~~Dr~g~Tr 111 (121)
T 2pjp_A 68 ANMIRDLDQEC-GSTCAADFRDRLGVGRKLAIQILEYFDRIGFTR 111 (121)
T ss_dssp HHHHHHHHHHH-SSEEHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHC-CCccHHHHHHHHCCcHHHHHHHHHHHhhcCCeE
Confidence 45556666665 566665 355666788999999999996
No 45
>2dkz_A Hypothetical protein LOC64762; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.35 E-value=31 Score=25.76 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.1
Q ss_pred CCCCccccccchhhhHHHHhh
Q 037966 77 RPPLSLERCSGAHVLEFLRYL 97 (205)
Q Consensus 77 rPPlsL~~csg~hVleFLryl 97 (205)
.||..|+.=|-.+|.+|||++
T Consensus 10 ~pP~dLs~lSv~EVs~~Lr~i 30 (84)
T 2dkz_A 10 QPPADLSGLSIEEVSKSLRFI 30 (84)
T ss_dssp CCCSCCSSCCHHHHHHHGGGT
T ss_pred CCchhhhhcCHHHHHHHHHHc
Confidence 699999999999999999954
No 46
>4a8e_A XER A, probable tyrosine recombinase XERC-like; cell cycle, chromosome dimer resolution, PAB0255; 2.99A {Pyrococcus abyssi}
Probab=26.30 E-value=1e+02 Score=23.12 Aligned_cols=51 Identities=25% Similarity=0.239 Sum_probs=36.2
Q ss_pred hhhhhHHHHHHHhcCCCCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhcchhHHHHHHHHH
Q 037966 63 RRDWNTFGQYLRNHRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAWGSLDALIGRLRA 142 (205)
Q Consensus 63 RrdWntf~qyL~n~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAWGSLDALIGRLRA 142 (205)
++.++.|..| +...+..||.+|+.++-+.| .+..++...+..|++
T Consensus 34 ~~~l~~~~~~---------~~~i~~~~i~~~~~~l~~~~--------------------------~s~~t~~~~~~~l~~ 78 (292)
T 4a8e_A 34 TYYISKFFEE---------GHSPTARDALRFLAKLKRKG--------------------------YSTRSLNLVIQALKA 78 (292)
T ss_dssp HHHHHHHHHH---------TCCSSHHHHHHHHHHHHHHC--------------------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------HhcCCHHHHHHHHHHHHhCC--------------------------CCHHHHHHHHHHHHH
Confidence 4456666666 66778999999999886432 234577888888888
Q ss_pred HHHHhC
Q 037966 143 AFEEHG 148 (205)
Q Consensus 143 afEE~G 148 (205)
+|+...
T Consensus 79 ~~~~a~ 84 (292)
T 4a8e_A 79 YFKFEG 84 (292)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 888643
No 47
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=25.50 E-value=42 Score=26.94 Aligned_cols=17 Identities=35% Similarity=0.526 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhCCC
Q 037966 134 DALIGRLRAAFEEHGGK 150 (205)
Q Consensus 134 DALIGRLRAafEE~Gg~ 150 (205)
+--+..|+++|+++||.
T Consensus 136 ~~~~~~l~~~y~~~gg~ 152 (158)
T 1am7_A 136 EHKADSLIAKFKEAGGT 152 (158)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHcCCc
Confidence 56667999999999974
No 48
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.37 E-value=16 Score=31.06 Aligned_cols=40 Identities=28% Similarity=0.385 Sum_probs=0.0
Q ss_pred HHHHHhCCCCCCCcchhhHHHHHHHHHHHHHhhhcCCchh
Q 037966 142 AAFEEHGGKPEANPFGARAVRLYLREVRDSQAKARGISYE 181 (205)
Q Consensus 142 AafEE~Gg~PE~NPF~araVRlYLReVRd~QAkARgi~y~ 181 (205)
..|-|.|..|+..|=-|-|+|+=|.|-|.-|.+.+.-.-+
T Consensus 213 ~~~~~~~~dp~~dpela~alr~s~eee~~rq~~~~~~~~~ 252 (268)
T 4b4t_W 213 GTFMDFGVDPSMDPELAMALRLSMEEEQQRQERLRQQQQQ 252 (268)
T ss_dssp ----------------------------------------
T ss_pred CcccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHhhcccc
Confidence 3456778899999999999999999999988776644433
No 49
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=24.33 E-value=59 Score=25.17 Aligned_cols=38 Identities=29% Similarity=0.506 Sum_probs=26.1
Q ss_pred chhHHHHHHHHHHHHHhCCCCC------CCcc-hhhHHHHHHHHHH
Q 037966 131 GSLDALIGRLRAAFEEHGGKPE------ANPF-GARAVRLYLREVR 169 (205)
Q Consensus 131 GSLDALIGRLRAafEE~Gg~PE------~NPF-~araVRlYLReVR 169 (205)
|+. +-|-.||..|++.|...+ .++. .+.+++.||||.-
T Consensus 50 g~~-~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~lLK~flreLp 94 (202)
T 2osa_A 50 GFS-DLIEDVKMAFDRDGEKADISVNMYEDINIITGALKLYFRDLP 94 (202)
T ss_dssp CCH-HHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHHHHHHHHTCS
T ss_pred CcH-HHHHHHHHHHHcCCCccCCCccccccHHHHHHHHHHHHHhCC
Confidence 444 457889999998764322 2332 6899999999863
No 50
>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A
Probab=24.11 E-value=1e+02 Score=22.32 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHhhh
Q 037966 158 ARAVRLYLREVRDSQAKA 175 (205)
Q Consensus 158 araVRlYLReVRd~QAkA 175 (205)
-++|+.|++++.+.|++.
T Consensus 31 ~~nv~~yy~~~~~~~~~~ 48 (77)
T 3cw1_L 31 KENVKDYYCKWMEEQAQS 48 (77)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578999999999999884
No 51
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=23.97 E-value=34 Score=22.76 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=16.8
Q ss_pred hcCCCCccccccchhhhHHHHhhcccC
Q 037966 75 NHRPPLSLERCSGAHVLEFLRYLDQFG 101 (205)
Q Consensus 75 n~rPPlsL~~csg~hVleFLrylDqfG 101 (205)
...|+..|+.=--++|++||+.+....
T Consensus 74 ~~Mp~~~Ls~~ei~~l~~yl~~~~~~~ 100 (110)
T 2l4d_A 74 LAMPNMRLGDAEVSALISYLEEETARL 100 (110)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHHccccc
Confidence 367887765555556777776664433
No 52
>2k6l_A Putative uncharacterized protein; xanthonomas axonopodis, RHH, structural proteomics, plasmid, hypothetical DNA binding protein; NMR {Xanthomonas axonopodis PV}
Probab=23.71 E-value=65 Score=22.22 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhCCC--CCCCcchhhHHHHHHHHH
Q 037966 134 DALIGRLRAAFEEHGGK--PEANPFGARAVRLYLREV 168 (205)
Q Consensus 134 DALIGRLRAafEE~Gg~--PE~NPF~araVRlYLReV 168 (205)
|.+=-+||...++.||. ..-.=|.-.|||+||-+.
T Consensus 12 ~d~d~~lR~~l~~~~G~rKGdlSkfVEeAvr~~lf~~ 48 (51)
T 2k6l_A 12 PDVDQSVRMFIAAQGGGRKGDLSRFIEDAVRAYLFER 48 (51)
T ss_dssp HHHHHHHHHHHHHHCSCCSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHH
Confidence 34445799999999863 445568899999998764
No 53
>1yx4_A 26S proteasome non-ATPase regulatory subunit 4; polyubiquitin, UIM, hydrolase; NMR {Homo sapiens} PDB: 1yx5_A 1yx6_A 2kde_A 2kdf_A
Probab=23.49 E-value=33 Score=27.50 Aligned_cols=32 Identities=34% Similarity=0.428 Sum_probs=28.3
Q ss_pred HhCCCCCCCcchhhHHHHHHHHHHHHHhhhcC
Q 037966 146 EHGGKPEANPFGARAVRLYLREVRDSQAKARG 177 (205)
Q Consensus 146 E~Gg~PE~NPF~araVRlYLReVRd~QAkARg 177 (205)
|+|..|+..|=-+-|+|+-|.|.|.-|.++..
T Consensus 31 efgvDp~~DPeLa~ALr~Smeee~~Rqe~~~~ 62 (132)
T 1yx4_A 31 EFGVDPSADPELALALRVSMEEQRQRQEEEAR 62 (132)
T ss_dssp CSCSCGGGCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHHHHHHhHHHHHHHHHHHHH
Confidence 67889999999999999999999999876543
No 54
>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B
Probab=23.12 E-value=27 Score=25.68 Aligned_cols=23 Identities=22% Similarity=0.499 Sum_probs=18.2
Q ss_pred ccccCCCCcCCCCCCCCCCCchh
Q 037966 105 VHTQLCPFFGHPNPPAPCPCPLR 127 (205)
Q Consensus 105 VH~~~C~ffG~p~ppapC~CPlR 127 (205)
+=..+|.|||.|..-..|.-=+|
T Consensus 18 lC~ngCGFfGnpaT~nlCSkCyr 40 (74)
T 2c7n_A 18 LCKKGCGYYGNPAWQGFCSKCWR 40 (74)
T ss_dssp CCTTCSSSCCCGGGTTCCHHHHH
T ss_pred hHHhCCCCCCChhhcCccHHHHH
Confidence 34568999999999999875554
No 55
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=22.91 E-value=65 Score=23.45 Aligned_cols=27 Identities=26% Similarity=0.248 Sum_probs=23.6
Q ss_pred hhhhcchhHHHHHHHHHHHHHhCCCCC
Q 037966 126 LRQAWGSLDALIGRLRAAFEEHGGKPE 152 (205)
Q Consensus 126 lRQAWGSLDALIGRLRAafEE~Gg~PE 152 (205)
..-.-||+|.+--+|++|=+|+|..|+
T Consensus 60 ~~f~IGSvd~FE~~Le~aQ~el~i~~~ 86 (99)
T 2lna_A 60 VWFNIGSVDTFERNLETLQQELGIEGE 86 (99)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTCCTT
T ss_pred EEEEeCCHHHHHHHHHHHHHHcCCCcc
Confidence 355669999999999999999998876
No 56
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=22.83 E-value=13 Score=28.42 Aligned_cols=14 Identities=50% Similarity=1.139 Sum_probs=12.8
Q ss_pred hhhHHHHHHHhcCC
Q 037966 65 DWNTFGQYLRNHRP 78 (205)
Q Consensus 65 dWntf~qyL~n~rP 78 (205)
-|.+|.+||..|.|
T Consensus 63 GW~~L~~yL~khdp 76 (97)
T 1v5r_A 63 GWETFAGYLLKHDP 76 (97)
T ss_dssp EEEEHHHHHHHHCH
T ss_pred cHHHHHHHHHHcCc
Confidence 39999999999988
No 57
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=22.64 E-value=46 Score=20.63 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Q 037966 134 DALIGRLRAAFEEHGGKPEANPFGARAVRLYLREVRD 170 (205)
Q Consensus 134 DALIGRLRAafEE~Gg~PE~NPF~araVRlYLReVRd 170 (205)
|.|.-+|-+.-+..|+. .+=+...||+.||.+..+
T Consensus 12 ~~l~~~l~~lA~~~~rs--~s~lir~Ai~~yl~~~e~ 46 (52)
T 2gpe_A 12 DATRERIKSAATRIDRT--PHWLIKQAIFSYLEQLEN 46 (52)
T ss_dssp HHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHCcC--HHHHHHHHHHHHHHHHHh
Confidence 67888999999999874 456788899999986543
No 58
>3tfg_A ALR2278 protein; heme-based sensor domain, GAS binding, signaling protein; HET: HEM; 1.90A {Nostoc SP} PDB: 3tfd_A* 3tfe_A* 3tff_A* 2o09_A* 2o0c_A* 2o0g_A* 3l6j_A* 3tf8_A* 3tf9_A* 3tfa_A*
Probab=22.63 E-value=27 Score=27.40 Aligned_cols=81 Identities=23% Similarity=0.417 Sum_probs=47.6
Q ss_pred hhhhhHHHHHHHh---cCCCCccccccchhhhHHHHhhcccCcccccccCCCCcCCCCCCC-CCCCc----hhhhc----
Q 037966 63 RRDWNTFGQYLRN---HRPPLSLERCSGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPA-PCPCP----LRQAW---- 130 (205)
Q Consensus 63 RrdWntf~qyL~n---~rPPlsL~~csg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppa-pC~CP----lRQAW---- 130 (205)
...|..|++|+-. ....-.+.++.+.+..+||..+|. +|...=..|...+||. -|.-- +..-+
T Consensus 64 ~~ll~~fG~~~~~~~~~~~y~~~l~~~g~~l~dFL~~ld~-----lH~~v~~~yp~~~~Psf~~~~~~~~~l~l~Y~S~R 138 (189)
T 3tfg_A 64 EEWWIAFGEYWVTYTSEEGYGELLASAGDSLPEFMENLDN-----LHARVGLSFPQLRPPAFECQHTSSKSMELHYQSTR 138 (189)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHTCSSHHHHHHHHHH-----HHHHHHHHSTTCCCCEEEEEEEETTEEEEEEECSS
T ss_pred HHHHHHHHHHHHHHhhhhhcHHHHHhcCCCHHHHHHhHHH-----HHHHHHHhCCCCCCCeEEEEECCCCEEEEEEECCC
Confidence 4569999999864 333446677889999999998874 4444333332222221 12100 00111
Q ss_pred -chhHHHHHHHHHHHHHhC
Q 037966 131 -GSLDALIGRLRAAFEEHG 148 (205)
Q Consensus 131 -GSLDALIGRLRAafEE~G 148 (205)
|=.+-++|-|+++-+-.|
T Consensus 139 ~gl~~~~~Gli~~~A~~f~ 157 (189)
T 3tfg_A 139 CGLAPMVLGLLHGLGKRFQ 157 (189)
T ss_dssp SSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 456778888888877554
No 59
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=22.22 E-value=49 Score=23.43 Aligned_cols=22 Identities=32% Similarity=0.370 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHhCCCCCCC
Q 037966 133 LDALIGRLRAAFEEHGGKPEAN 154 (205)
Q Consensus 133 LDALIGRLRAafEE~Gg~PE~N 154 (205)
-|-=|+||++...+||.-+|-|
T Consensus 37 ~eQEieRL~~LLkqHgl~~e~~ 58 (58)
T 3a2a_A 37 KEQEIERLNKLLRQHGLLGEVN 58 (58)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHcCCcccCC
Confidence 4677999999999999887754
No 60
>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*
Probab=22.09 E-value=44 Score=30.02 Aligned_cols=45 Identities=20% Similarity=0.177 Sum_probs=28.7
Q ss_pred cchhhhHHHHhhcccCcccccccCCCCcCCCCCCCCCCCchhhhc
Q 037966 86 SGAHVLEFLRYLDQFGKTKVHTQLCPFFGHPNPPAPCPCPLRQAW 130 (205)
Q Consensus 86 sg~hVleFLrylDqfGKTkVH~~~C~ffG~p~ppapC~CPlRQAW 130 (205)
..+.|-+||..+.-.+.+.|-.....--.....|.||+|.+|++-
T Consensus 108 ~~~~V~~~l~~l~~~~d~~v~~~~~~~~~~~~~p~~~~~tl~~~l 152 (458)
T 3qfs_A 108 DSALVNQLGKILGADLDVVMSLNNLDEESNKKHPFPCPTSYRTAL 152 (458)
T ss_dssp CHHHHHHHHHHHTCCTTCEEEEEESSTTCSCCCSSSSSEEHHHHH
T ss_pred CHHHHHHHHHHhCcCCCceEEecCCCcccccCCCCCCCeeHHHHH
Confidence 356688899888777777665433221122345678888888764
No 61
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=21.90 E-value=1.1e+02 Score=24.20 Aligned_cols=33 Identities=33% Similarity=0.675 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCCCC--CCcc------hhhHHHHHHHHH
Q 037966 135 ALIGRLRAAFEEHGGKPE--ANPF------GARAVRLYLREV 168 (205)
Q Consensus 135 ALIGRLRAafEE~Gg~PE--~NPF------~araVRlYLReV 168 (205)
+-|-+||..|+.. ..+. .+++ .+.+++.||||.
T Consensus 65 ~~i~~L~~~~~~~-~~~~~~~~~~~~dvh~va~lLK~fLreL 105 (229)
T 3iug_A 65 SNIQRLRHEFDSE-HVPDLTKEPYVQDIHSVGSLCKLYFREL 105 (229)
T ss_dssp HHHHHHHHHHHTT-CCCCTTSTTTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC-CCCCccccccccchHHHHHHHHHHHHHC
Confidence 4577899999863 3332 2222 789999999985
No 62
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans}
Probab=20.81 E-value=72 Score=21.43 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHhhhcCCch
Q 037966 159 RAVRLYLREVRDSQAKARGISY 180 (205)
Q Consensus 159 raVRlYLReVRd~QAkARgi~y 180 (205)
.++---|++.|+..|+.++||-
T Consensus 5 ~~l~~~L~~wR~~~A~~~~vpp 26 (77)
T 2rhf_A 5 ADLSEALRELRRELMKETGYSA 26 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHcCCCc
Confidence 4566779999999999999984
No 63
>2jrb_A ORF 1 protein; RNA binding protein; NMR {Mus musculus}
Probab=20.78 E-value=44 Score=24.95 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=18.5
Q ss_pred CchHHHhhhhhhhHHHHHHHhcC
Q 037966 55 LSRYENQKRRDWNTFGQYLRNHR 77 (205)
Q Consensus 55 ~SrYesQKRrdWntf~qyL~n~r 77 (205)
.|-.-=|+||.|+...+-|+.+.
T Consensus 16 fSaeTLq~RRew~~IfkvLk~kn 38 (88)
T 2jrb_A 16 FSPETMKARRAWTDVIQTLREHK 38 (88)
T ss_dssp CTTTHHHHHHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHcC
Confidence 44455699999999999998764
No 64
>4fdi_A N-acetylgalactosamine-6-sulfatase; glycoprotein, enzyme replacement therapy, formylg N-linked glycosylation, lysosomal enzyme, hydrolase; HET: NAG CIT; 2.20A {Homo sapiens} PDB: 4fdj_A*
Probab=20.70 E-value=52 Score=28.56 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHhCC
Q 037966 132 SLDALIGRLRAAFEEHGG 149 (205)
Q Consensus 132 SLDALIGRLRAafEE~Gg 149 (205)
.+|..||||-.+++|.|-
T Consensus 234 ~~D~~vG~il~~L~~~gl 251 (502)
T 4fdi_A 234 EIDDSIGKILELLQDLHV 251 (502)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 589999999999999764
No 65
>2lep_A Rhomboid protease GLPG 1; cell membrane, cytosol, membrane protein, micelles, serine P domain swapping, hydrolase; NMR {Escherichia coli}
Probab=25.23 E-value=22 Score=24.32 Aligned_cols=15 Identities=40% Similarity=0.392 Sum_probs=13.9
Q ss_pred CCcchhhHHHHHHHH
Q 037966 153 ANPFGARAVRLYLRE 167 (205)
Q Consensus 153 ~NPF~araVRlYLRe 167 (205)
.||..|.+++.||+.
T Consensus 8 ~N~~~Aq~f~dyL~s 22 (69)
T 2lep_A 8 ANPRVAQAFVDYMAT 22 (69)
Confidence 799999999999986
Done!