Query 037967
Match_columns 66
No_of_seqs 162 out of 1013
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:12:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15101 protease3; Provisiona 99.6 7.2E-16 1.6E-20 113.7 5.6 60 7-66 31-90 (961)
2 COG1025 Ptr Secreted/periplasm 99.6 6.6E-16 1.4E-20 114.8 3.8 61 6-66 10-70 (937)
3 KOG0959 N-arginine dibasic con 99.6 6.7E-16 1.5E-20 115.4 3.8 63 4-66 12-74 (974)
4 TIGR02110 PQQ_syn_pqqF coenzym 99.3 2.4E-12 5.3E-17 94.2 4.5 45 22-66 2-46 (696)
5 COG0612 PqqL Predicted Zn-depe 99.1 8.4E-11 1.8E-15 81.0 4.9 49 18-66 15-63 (438)
6 KOG0960 Mitochondrial processi 98.9 2E-09 4.4E-14 75.3 3.8 49 17-66 31-79 (467)
7 PF00675 Peptidase_M16: Insuli 98.7 9.4E-09 2E-13 61.6 3.1 37 30-66 1-37 (149)
8 KOG2067 Mitochondrial processi 98.6 4.6E-08 9.9E-13 68.7 4.1 47 19-66 24-70 (472)
9 KOG2583 Ubiquinol cytochrome c 98.4 1.4E-07 3.1E-12 66.0 2.8 46 20-66 23-68 (429)
10 PTZ00432 falcilysin; Provision 97.2 0.00063 1.4E-08 52.7 4.8 45 18-66 90-136 (1119)
11 PRK15101 protease3; Provisiona 96.6 0.002 4.4E-08 48.4 3.0 46 20-65 523-571 (961)
12 PF03410 Peptidase_M44: Protei 85.9 0.39 8.5E-06 35.3 1.1 42 23-66 2-43 (590)
13 PHA03081 putative metalloprote 72.7 1.9 4E-05 31.9 1.0 42 23-66 2-43 (595)
14 PF08288 PIGA: PIGA (GPI ancho 69.2 5.8 0.00013 22.8 2.4 15 23-37 10-24 (90)
15 KOG1214 Nidogen and related ba 56.0 19 0.00041 28.8 3.6 43 4-53 1131-1178(1289)
16 KOG3368 Transport protein part 53.6 34 0.00073 21.2 3.8 33 8-40 59-91 (140)
17 COG1026 Predicted Zn-dependent 52.7 32 0.00069 27.5 4.4 42 20-66 22-63 (978)
18 TIGR02934 nifT_nitrog probable 49.4 29 0.00062 18.9 2.8 20 21-40 37-56 (67)
19 CHL00051 rps12 ribosomal prote 47.1 63 0.0014 19.6 4.3 46 12-57 44-91 (123)
20 PF06988 NifT: NifT/FixU prote 44.1 31 0.00067 18.6 2.4 18 21-38 37-54 (64)
21 PF13876 Phage_gp49_66: Phage 43.5 27 0.00058 19.5 2.2 17 18-34 26-42 (81)
22 PF09285 Elong-fact-P_C: Elong 40.1 52 0.0011 17.1 2.8 17 17-33 18-34 (56)
23 PRK05163 rpsL 30S ribosomal pr 37.8 95 0.0021 18.9 4.6 46 12-57 44-91 (124)
24 COG5554 NifU Nitrogen fixation 32.9 56 0.0012 17.6 2.3 28 11-38 26-53 (69)
25 PF06919 Phage_T4_Gp30_7: Phag 30.2 1.2E+02 0.0026 18.1 3.6 22 17-38 40-61 (121)
26 PF11823 DUF3343: Protein of u 29.0 31 0.00066 18.2 0.9 27 26-52 23-49 (73)
27 TIGR00981 rpsL_bact ribosomal 28.5 1.4E+02 0.0031 18.1 4.4 46 12-57 44-91 (124)
28 PF13359 DDE_Tnp_4: DDE superf 28.0 1E+02 0.0023 18.0 3.2 47 10-57 8-57 (158)
29 PF08309 LVIVD: LVIVD repeat; 27.9 83 0.0018 15.2 2.6 24 20-43 13-37 (42)
30 smart00841 Elong-fact-P_C Elon 25.3 90 0.002 16.2 2.2 17 17-33 18-34 (56)
31 PHA01971 hypothetical protein 24.9 77 0.0017 19.2 2.2 17 17-33 65-81 (123)
32 cd03368 Ribosomal_S12 S12-like 24.8 1.6E+02 0.0035 17.4 4.4 46 12-57 42-89 (108)
33 PF08126 Propeptide_C25: Prope 23.7 1.3E+02 0.0028 19.3 3.2 37 15-51 38-74 (202)
34 PF11948 DUF3465: Protein of u 23.6 1E+02 0.0022 18.9 2.5 22 18-39 58-79 (131)
35 PF07202 Tcp10_C: T-complex pr 22.0 1.2E+02 0.0026 19.3 2.7 20 20-39 57-76 (179)
36 PRK13490 chemoreceptor glutami 21.9 44 0.00096 20.8 0.8 20 47-66 30-49 (162)
37 PF04099 Sybindin: Sybindin-li 21.3 2E+02 0.0043 17.2 3.7 31 10-40 67-97 (142)
38 PRK10775 cell division protein 20.2 1.2E+02 0.0026 20.4 2.6 19 15-33 193-211 (276)
39 PRK13487 chemoreceptor glutami 20.1 56 0.0012 21.2 1.0 23 44-66 44-66 (201)
No 1
>PRK15101 protease3; Provisional
Probab=99.61 E-value=7.2e-16 Score=113.73 Aligned_cols=60 Identities=43% Similarity=0.695 Sum_probs=57.2
Q ss_pred CcceeecCCCccceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967 7 DVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66 (66)
Q Consensus 7 ~~~~~k~~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl 66 (66)
...+.|+..|.+.|++.+|+|||+|++++++..+.+++++++++||++||++++||||||
T Consensus 31 ~~~~~k~~~d~~~~~~~~L~NGL~v~l~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAHfl 90 (961)
T PRK15101 31 QETIRKSEKDPRQYQAIRLDNGMTVLLVSDPQAVKSLAALALPVGSLEDPDAQQGLAHYL 90 (961)
T ss_pred cccCcCCCCCccceEEEEeCCCCEEEEEeCCCCcceeEEEEeCcCCCCCCCCCCchHHHH
Confidence 345899999999999999999999999999999999999999999999999999999996
No 2
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=6.6e-16 Score=114.78 Aligned_cols=61 Identities=51% Similarity=0.782 Sum_probs=58.3
Q ss_pred CCcceeecCCCccceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967 6 DDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66 (66)
Q Consensus 6 ~~~~~~k~~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl 66 (66)
....+.+|..|+++|+.++|||||++++++||..+++++++.|++||.+||.+.+||||||
T Consensus 10 ~~~~i~~~~~d~r~y~~I~LpNGl~~LlisDP~a~ks~aAL~V~vGs~~DP~e~~GLAHfl 70 (937)
T COG1025 10 IVLTIHKPALDDRKYRAIKLPNGLRALLVSDPQADKSSAALVVPVGSFDDPEEYPGLAHFL 70 (937)
T ss_pred chhhcccCcccCcceeEEECCCCceEEEecCCCCCccceeEEeecCCCCChhhcccHHHHH
Confidence 4566899999999999999999999999999999999999999999999999999999996
No 3
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=6.7e-16 Score=115.42 Aligned_cols=63 Identities=51% Similarity=0.873 Sum_probs=59.9
Q ss_pred CCCCcceeecCCCccceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967 4 GKDDVEIIKPRTDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66 (66)
Q Consensus 4 ~~~~~~~~k~~~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl 66 (66)
.+....+.|+..|.+.|+...|+|||++++++||.++++++++.|++||++||++.+|||||+
T Consensus 12 ~~~~~~~~k~~~d~r~yr~~~L~Ngl~alLisDp~tD~ssaal~V~vGS~~DP~dl~GLAHF~ 74 (974)
T KOG0959|consen 12 KREDVSIVKSLGDTREYRGIELTNGLRALLISDPKTDKSSAALDVKVGSFSDPEDLQGLAHFC 74 (974)
T ss_pred hhcccccccCCCCccceeEEEecCCceEEEecCCCCCccceeeeeeccccCCccccccHHHHH
Confidence 456677999999999999999999999999999999999999999999999999999999996
No 4
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=99.30 E-value=2.4e-12 Score=94.23 Aligned_cols=45 Identities=44% Similarity=0.725 Sum_probs=43.3
Q ss_pred EEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967 22 RLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66 (66)
Q Consensus 22 ~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl 66 (66)
+++|+|||+|+++++++.+.+++.++|++||++||++++|+|||+
T Consensus 2 ~~tL~NGLrVllv~~p~~p~vav~l~v~aGS~~Ep~~~~GLAHfL 46 (696)
T TIGR02110 2 RITLPNGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFL 46 (696)
T ss_pred eEEcCCCCEEEEEECCCCCEEEEEEEEeeccCCCCCCCCcHHHHH
Confidence 578999999999999999999999999999999999999999995
No 5
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=99.13 E-value=8.4e-11 Score=80.96 Aligned_cols=49 Identities=31% Similarity=0.542 Sum_probs=46.7
Q ss_pred cceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967 18 RQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66 (66)
Q Consensus 18 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl 66 (66)
..++..+|+||+++++.+++..+.+++.+++++||.+|++++.|+||||
T Consensus 15 ~~~~~~~L~nGl~~~~~~~~~~~~vs~~~~v~~Gs~~e~~~~~G~AH~l 63 (438)
T COG0612 15 PGLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFL 63 (438)
T ss_pred ccceEEEcCCCCEEEEEeCCCCCEEEEEEEEeecccCCCCCcccHHHHH
Confidence 3488999999999999999999999999999999999999999999996
No 6
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2e-09 Score=75.27 Aligned_cols=49 Identities=22% Similarity=0.270 Sum_probs=45.4
Q ss_pred ccceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967 17 KRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66 (66)
Q Consensus 17 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl 66 (66)
-++.+..+|+||++|...++ +..++++++|+.+||+.|.+...|.||||
T Consensus 31 ~P~t~vttL~NGlrVaTE~~-~a~TATVGVwidaGSR~EnekNNG~ahFL 79 (467)
T KOG0960|consen 31 VPETEVTTLPNGLRVATEHN-SASTATVGVWIDAGSRFENEKNNGTAHFL 79 (467)
T ss_pred CCcceEEEcCCCcEEEeccC-CCcceEEEEEeccCccccccccccHHHHH
Confidence 35677899999999999888 89999999999999999999999999996
No 7
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=98.73 E-value=9.4e-09 Score=61.59 Aligned_cols=37 Identities=35% Similarity=0.639 Sum_probs=34.4
Q ss_pred EEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967 30 QVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66 (66)
Q Consensus 30 ~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl 66 (66)
+|+++++|..+.+++++.+++|+++||++++|+||++
T Consensus 1 ~V~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll 37 (149)
T PF00675_consen 1 KVVLVEDPGSPVVSVSLVFKAGSRYEPPGKPGLAHLL 37 (149)
T ss_dssp EEEEEESTTSSEEEEEEEES-SGGGSCTTTTTHHHHH
T ss_pred CEEEEEcCCCCEEEEEEEEeeccCCCCCCCCchhhhh
Confidence 6899999999999999999999999999999999974
No 8
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=4.6e-08 Score=68.68 Aligned_cols=47 Identities=23% Similarity=0.444 Sum_probs=43.6
Q ss_pred ceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967 19 QYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66 (66)
Q Consensus 19 ~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl 66 (66)
+.+..+|||||+|.....++ +.+++++.|++||++|.+...|++|||
T Consensus 24 ~~kvttL~NGlkvase~~pg-~f~~vGlyIdsGsrYE~~~~~GisH~l 70 (472)
T KOG2067|consen 24 NTKVTTLPNGLKVASENTPG-QFCTVGLYIDSGSRYEAKYFSGISHFL 70 (472)
T ss_pred cceeeecCCccEEeccCCCC-CceEEEEEEecCccccCcCcccHHHHH
Confidence 67788999999999988885 899999999999999999999999996
No 9
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=98.44 E-value=1.4e-07 Score=65.99 Aligned_cols=46 Identities=26% Similarity=0.396 Sum_probs=41.9
Q ss_pred eEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967 20 YRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66 (66)
Q Consensus 20 ~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl 66 (66)
-+..+|.|||+|.-++.+ .+++++.+.+++||++||.+++|++|+|
T Consensus 23 ~~~~kl~ngL~Vas~e~~-~~is~l~l~~~AGSRYe~~~~~G~sHll 68 (429)
T KOG2583|consen 23 SKTTKLVNGLTVASREAP-TAISSLSLAFRAGSRYEPADQQGLSHLL 68 (429)
T ss_pred hhhhccccceEEEeccCC-CcceEEEEEEecCccCCccccccHHHHH
Confidence 345689999999999988 5999999999999999999999999985
No 10
>PTZ00432 falcilysin; Provisional
Probab=97.21 E-value=0.00063 Score=52.69 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=35.7
Q ss_pred cceEEEEccCCCEEEEEEcCC--CCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967 18 RQYRRLVLKNSLQVLLISDPD--ADKCAASMNVSVGAFCDPVGLEGLAHFL 66 (66)
Q Consensus 18 ~~~~~~~L~NGl~v~~~~~~~--~~~~~~~~~v~~Gs~~ep~~~~GlAHfl 66 (66)
.-+.+.-.+||++|+.+..++ .+..++++++++|+. +.+|+||||
T Consensus 90 ~~~~~~H~~nGl~vl~~~~~d~~~~~~~f~i~f~T~~~----d~~G~aH~L 136 (1119)
T PTZ00432 90 VATVYSHKKTGLQVISLKTNDSSGKEMCFDFYVPTPPH----NDKGIPHIL 136 (1119)
T ss_pred EEEEEEEcCCCCEEEEEecCCCccceeEEEEEecCCCC----CCcchhHHH
Confidence 445566678999999988665 357899999999973 458999986
No 11
>PRK15101 protease3; Provisional
Probab=96.59 E-value=0.002 Score=48.40 Aligned_cols=46 Identities=17% Similarity=0.132 Sum_probs=41.4
Q ss_pred eEEEEccCCCEEEEEEcC---CCCeEEEEEEEcccCCCCCCCCCcceee
Q 037967 20 YRRLVLKNSLQVLLISDP---DADKCAASMNVSVGAFCDPVGLEGLAHF 65 (66)
Q Consensus 20 ~~~~~L~NGl~v~~~~~~---~~~~~~~~~~v~~Gs~~ep~~~~GlAHf 65 (66)
...+.++||++|++.+++ +.|++.+.+.+++|+..+++...|++.+
T Consensus 523 p~~i~~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L 571 (961)
T PRK15101 523 PELIVDEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVLFAL 571 (961)
T ss_pred CeEEEcCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHHHHH
Confidence 467889999999999999 7899999999999999999888888765
No 12
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=85.91 E-value=0.39 Score=35.28 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=29.2
Q ss_pred EEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967 23 LVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66 (66)
Q Consensus 23 ~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl 66 (66)
+.|+||.+|++.+.-. .-+.+++. +-|--.|-.+.-|+||+|
T Consensus 2 IvL~NGVRiFin~~M~-KDIYlGIs-~FGFe~DI~~iLGiAHLL 43 (590)
T PF03410_consen 2 IVLSNGVRIFINPSMK-KDIYLGIS-NFGFENDIGEILGIAHLL 43 (590)
T ss_pred eEecCceEEEecCccc-cceEEeec-ccccccchHHHHhHHHHH
Confidence 5799999999854332 22344432 466667778899999986
No 13
>PHA03081 putative metalloprotease; Provisional
Probab=72.68 E-value=1.9 Score=31.91 Aligned_cols=42 Identities=21% Similarity=0.347 Sum_probs=28.8
Q ss_pred EEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967 23 LVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66 (66)
Q Consensus 23 ~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl 66 (66)
+.|+||.++++.+.-. .-..+++. ..|--.|-.+.-|+||+|
T Consensus 2 i~~~ngvr~f~~~~m~-kdiy~gi~-~fgfe~di~~~lg~ahll 43 (595)
T PHA03081 2 IVLSNGVRIFINPSMK-KDIYLGIS-NFGFENDIGEILGIAHLL 43 (595)
T ss_pred eEecCceEEEecCccc-cceEEeec-ccccccchHHHHhHHHHH
Confidence 5799999999754432 22333332 466667778899999985
No 14
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=69.22 E-value=5.8 Score=22.80 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=12.1
Q ss_pred EEccCCCEEEEEEcC
Q 037967 23 LVLKNSLQVLLISDP 37 (66)
Q Consensus 23 ~~L~NGl~v~~~~~~ 37 (66)
.-|.|||+|+.++-.
T Consensus 10 RyltngLKVYYlP~~ 24 (90)
T PF08288_consen 10 RYLTNGLKVYYLPLK 24 (90)
T ss_pred EEcCCCeEEEeecch
Confidence 348999999998754
No 15
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=55.96 E-value=19 Score=28.78 Aligned_cols=43 Identities=19% Similarity=0.131 Sum_probs=29.1
Q ss_pred CCCCcceeecCCCccceEE-----EEccCCCEEEEEEcCCCCeEEEEEEEcccCC
Q 037967 4 GKDDVEIIKPRTDKRQYRR-----LVLKNSLQVLLISDPDADKCAASMNVSVGAF 53 (66)
Q Consensus 4 ~~~~~~~~k~~~d~~~~~~-----~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~ 53 (66)
.|++..|.++.-|-..-+. +-|||||++. +....-.|+.+|.-
T Consensus 1131 nRenPkIets~mDG~NrRilin~DigLPNGLtfd-------pfs~~LCWvDAGt~ 1178 (1289)
T KOG1214|consen 1131 NRENPKIETSSMDGENRRILINTDIGLPNGLTFD-------PFSKLLCWVDAGTK 1178 (1289)
T ss_pred cccCCcceeeccCCccceEEeecccCCCCCceeC-------cccceeeEEecCCc
Confidence 4778888888888544333 4589999986 34455667777753
No 16
>KOG3368 consensus Transport protein particle (TRAPP) complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.64 E-value=34 Score=21.16 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=21.9
Q ss_pred cceeecCCCccceEEEEccCCCEEEEEEcCCCC
Q 037967 8 VEIIKPRTDKRQYRRLVLKNSLQVLLISDPDAD 40 (66)
Q Consensus 8 ~~~~k~~~d~~~~~~~~L~NGl~v~~~~~~~~~ 40 (66)
+.|..-+...-+..+...|.||+++++.||...
T Consensus 59 ~~f~sy~Ts~YklhfyeTptglk~vl~Tdpk~~ 91 (140)
T KOG3368|consen 59 DGFLSYKTSKYKLHFYETPTGLKFVLNTDPKAG 91 (140)
T ss_pred cCeeEEeeceeEEEEEEcCCCcEEEEecCCCcc
Confidence 334333344444556677899999999999754
No 17
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=52.72 E-value=32 Score=27.47 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=31.4
Q ss_pred eEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCCCCCcceeeC
Q 037967 20 YRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPVGLEGLAHFL 66 (66)
Q Consensus 20 ~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~~~~GlAHfl 66 (66)
|....-++|++++.+.++ .+...+++.+++ +|.+-.|.||-|
T Consensus 22 ~~~~H~~TGa~l~hi~~~-d~~~vFsi~F~T----~p~dstGVaHiL 63 (978)
T COG1026 22 YILEHEKTGAELAHIKNE-DPNNVFSIAFKT----EPHDSTGVAHIL 63 (978)
T ss_pred EEEeeccCCceEEEecCC-CcCceEEEEeec----CCCCCCCcchHH
Confidence 334444699999999888 466667777754 788889999964
No 18
>TIGR02934 nifT_nitrog probable nitrogen fixation protein FixT. This largely uncharacterized protein family is assigned a role in nitrogen fixation by two criteria. First, its gene occurs, generally, among genes essential for expression of active nitrogenase. Second, its phylogenetic profile closely matches that of nitrogen-fixing bacteria. However, mutational studies in Klebsiella pneumoniae failed to demonstrate any phenotype for deletion or overexpression of the protein.
Probab=49.36 E-value=29 Score=18.88 Aligned_cols=20 Identities=25% Similarity=0.279 Sum_probs=14.9
Q ss_pred EEEEccCCCEEEEEEcCCCC
Q 037967 21 RRLVLKNSLQVLLISDPDAD 40 (66)
Q Consensus 21 ~~~~L~NGl~v~~~~~~~~~ 40 (66)
-.++|.||.+..+-+.+..+
T Consensus 37 G~v~L~NGw~l~lp~l~~~~ 56 (67)
T TIGR02934 37 GWVTLANGWRLELPEIPDDT 56 (67)
T ss_pred CEEEECCccEEEeCCCCCCC
Confidence 46889999999987665433
No 19
>CHL00051 rps12 ribosomal protein S12
Probab=47.14 E-value=63 Score=19.57 Aligned_cols=46 Identities=20% Similarity=0.211 Sum_probs=29.9
Q ss_pred ecCCCccceEEEEccCCCEEEE-EEcCCCCe-EEEEEEEcccCCCCCC
Q 037967 12 KPRTDKRQYRRLVLKNSLQVLL-ISDPDADK-CAASMNVSVGAFCDPV 57 (66)
Q Consensus 12 k~~~d~~~~~~~~L~NGl~v~~-~~~~~~~~-~~~~~~v~~Gs~~ep~ 57 (66)
||-.-.+++-..+|.||-+|.. ++-.+... -.-.+.|+.|..-|-+
T Consensus 44 KPNSA~RKvarVrLsngk~v~AyIPGeGhnlqehs~VLvrGGrv~DlP 91 (123)
T CHL00051 44 KPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLP 91 (123)
T ss_pred CCChhheeEEEEEccCCCEEEEEcCCCCccccccCEEEEeCCccCCCC
Confidence 3444457888899999999884 44444332 2345677788777654
No 20
>PF06988 NifT: NifT/FixU protein; InterPro: IPR009727 This family consists of several NifT and FixU bacterial proteins. The function of NifT is unknown although it is thought that the protein may be involved in biosynthesis of the FeMo cofactor of nitrogenase although perturbation of nifT expression in Klebsiella pneumoniae has only a limited effect on nitrogen fixation [].; GO: 0009399 nitrogen fixation; PDB: 2JN4_A.
Probab=44.12 E-value=31 Score=18.60 Aligned_cols=18 Identities=22% Similarity=0.315 Sum_probs=10.5
Q ss_pred EEEEccCCCEEEEEEcCC
Q 037967 21 RRLVLKNSLQVLLISDPD 38 (66)
Q Consensus 21 ~~~~L~NGl~v~~~~~~~ 38 (66)
-.++|.||.+..+-+.+.
T Consensus 37 G~v~L~NGw~l~lp~~~~ 54 (64)
T PF06988_consen 37 GEVTLANGWELYLPPLPA 54 (64)
T ss_dssp SEEEETTS-EEE----SS
T ss_pred CEEEECCcCEEEeCCCCC
Confidence 357899999999877664
No 21
>PF13876 Phage_gp49_66: Phage protein (N4 Gp49/phage Sf6 gene 66) family
Probab=43.53 E-value=27 Score=19.54 Aligned_cols=17 Identities=29% Similarity=0.098 Sum_probs=12.5
Q ss_pred cceEEEEccCCCEEEEE
Q 037967 18 RQYRRLVLKNSLQVLLI 34 (66)
Q Consensus 18 ~~~~~~~L~NGl~v~~~ 34 (66)
--+-..+|+||.+|.-.
T Consensus 26 ~TvC~l~L~NGF~V~g~ 42 (81)
T PF13876_consen 26 LTVCVLTLKNGFTVTGE 42 (81)
T ss_pred EEEEEEEECCCcEEEEe
Confidence 34567889999998843
No 22
>PF09285 Elong-fact-P_C: Elongation factor P, C-terminal; InterPro: IPR015365 These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology []. ; GO: 0043043 peptide biosynthetic process, 0005737 cytoplasm; PDB: 1YBY_A 3OYY_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H.
Probab=40.10 E-value=52 Score=17.12 Aligned_cols=17 Identities=12% Similarity=0.362 Sum_probs=13.4
Q ss_pred ccceEEEEccCCCEEEE
Q 037967 17 KRQYRRLVLKNSLQVLL 33 (66)
Q Consensus 17 ~~~~~~~~L~NGl~v~~ 33 (66)
...++..+|.||+++-+
T Consensus 18 ~~~~K~A~letG~~i~V 34 (56)
T PF09285_consen 18 SSSYKPATLETGAEIQV 34 (56)
T ss_dssp STTEEEEEETTS-EEEE
T ss_pred CCCccEEEEcCCCEEEc
Confidence 46689999999999875
No 23
>PRK05163 rpsL 30S ribosomal protein S12; Validated
Probab=37.81 E-value=95 Score=18.85 Aligned_cols=46 Identities=22% Similarity=0.256 Sum_probs=29.9
Q ss_pred ecCCCccceEEEEccCCCEEE-EEEcCCCCe-EEEEEEEcccCCCCCC
Q 037967 12 KPRTDKRQYRRLVLKNSLQVL-LISDPDADK-CAASMNVSVGAFCDPV 57 (66)
Q Consensus 12 k~~~d~~~~~~~~L~NGl~v~-~~~~~~~~~-~~~~~~v~~Gs~~ep~ 57 (66)
||-.-.+.+-..+|.||-+|. +++-.+-.. -.-.+.|+.|...|-+
T Consensus 44 KPNSA~RKvarVrL~ngk~v~AyIPGeGhnlqehs~VLvrGGrv~DlP 91 (124)
T PRK05163 44 KPNSALRKVARVRLTNGFEVTAYIPGEGHNLQEHSVVLIRGGRVKDLP 91 (124)
T ss_pred CCCchhheEEEEEeCCCCEEEEEcCCCCCCccccCEEEEeCCccCCCC
Confidence 344445788889999999986 445444322 2345667788777654
No 24
>COG5554 NifU Nitrogen fixation protein [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=32.88 E-value=56 Score=17.56 Aligned_cols=28 Identities=21% Similarity=0.261 Sum_probs=16.6
Q ss_pred eecCCCccceEEEEccCCCEEEEEEcCC
Q 037967 11 IKPRTDKRQYRRLVLKNSLQVLLISDPD 38 (66)
Q Consensus 11 ~k~~~d~~~~~~~~L~NGl~v~~~~~~~ 38 (66)
++..+.+--=-.+.|.||.+..+-+-|.
T Consensus 26 i~V~nedlwGG~ilL~NGWrL~lp~lP~ 53 (69)
T COG5554 26 IVVKNEDLWGGKILLANGWRLELPELPD 53 (69)
T ss_pred EEEeccccccceEEeccceEEEcccCCC
Confidence 3333333322346789999988866554
No 25
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=30.18 E-value=1.2e+02 Score=18.08 Aligned_cols=22 Identities=14% Similarity=0.232 Sum_probs=17.3
Q ss_pred ccceEEEEccCCCEEEEEEcCC
Q 037967 17 KRQYRRLVLKNSLQVLLISDPD 38 (66)
Q Consensus 17 ~~~~~~~~L~NGl~v~~~~~~~ 38 (66)
.+.|-+...+||+++.+--..+
T Consensus 40 ~pNYvf~~FEnG~tvsv~~~gs 61 (121)
T PF06919_consen 40 TPNYVFMRFENGITVSVTYNGS 61 (121)
T ss_pred CCCEEEEEecCCCEEEEEecCc
Confidence 4778899999999998755543
No 26
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=29.04 E-value=31 Score=18.24 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=21.1
Q ss_pred cCCCEEEEEEcCCCCeEEEEEEEcccC
Q 037967 26 KNSLQVLLISDPDADKCAASMNVSVGA 52 (66)
Q Consensus 26 ~NGl~v~~~~~~~~~~~~~~~~v~~Gs 52 (66)
.+|+.+-+++-|..=.+.|++.++.-.
T Consensus 23 ~~gi~~~liP~P~~i~~~CG~al~~~~ 49 (73)
T PF11823_consen 23 KNGIPVRLIPTPREISAGCGLALRFEP 49 (73)
T ss_pred HCCCcEEEeCCChhccCCCCEEEEECh
Confidence 479999999999776777877776643
No 27
>TIGR00981 rpsL_bact ribosomal protein S12, bacterial/organelle. This model recognizes ribosomal protein S12 of Bacteria, mitochondria, and chloroplasts. The homologous ribosomal proteins of Archaea and Eukarya, termed S23 in Eukarya and S12 or S23 in Archaea, score below the trusted cutoff.
Probab=28.53 E-value=1.4e+02 Score=18.08 Aligned_cols=46 Identities=22% Similarity=0.256 Sum_probs=29.5
Q ss_pred ecCCCccceEEEEccCCCEEE-EEEcCCCCe-EEEEEEEcccCCCCCC
Q 037967 12 KPRTDKRQYRRLVLKNSLQVL-LISDPDADK-CAASMNVSVGAFCDPV 57 (66)
Q Consensus 12 k~~~d~~~~~~~~L~NGl~v~-~~~~~~~~~-~~~~~~v~~Gs~~ep~ 57 (66)
||-.-.+.+-..+|.||-+|. +++-.+-.. -.-.+.++.|...|-+
T Consensus 44 KPNSA~RKvarVrL~ngk~v~AyIPG~Ghnlqehs~VLvrGGrv~DlP 91 (124)
T TIGR00981 44 KPNSALRKVARVRLTNGFEVTAYIPGEGHNLQEHSVVLIRGGRVKDLP 91 (124)
T ss_pred CCCchhheeEEEEeCCCCEEEEEcCCCCCCccccCEEEEeCCccCCCC
Confidence 344445788889999999886 445444222 2345667778776654
No 28
>PF13359 DDE_Tnp_4: DDE superfamily endonuclease
Probab=27.96 E-value=1e+02 Score=17.95 Aligned_cols=47 Identities=26% Similarity=0.392 Sum_probs=29.7
Q ss_pred eeecCC---CccceEEEEccCCCEEEEEEcCCCCeEEEEEEEcccCCCCCC
Q 037967 10 IIKPRT---DKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVGAFCDPV 57 (66)
Q Consensus 10 ~~k~~~---d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~Gs~~ep~ 57 (66)
+.+|.. ....|.-..=..++++.++-+++.....+.... -||.+|..
T Consensus 8 i~~P~~~~~~~~~y~~~k~~~~~~~q~v~d~~g~i~~v~~~~-~Gs~~D~~ 57 (158)
T PF13359_consen 8 IQRPSDKEEQREFYSGKKKNHSLKVQIVCDPDGRIIYVSVGW-PGSVHDST 57 (158)
T ss_pred EEeCCccccccccccCCCCcceEeEEEEEeccceeEeeeccc-cccccccc
Confidence 444554 334444344446888888888877777766654 58887754
No 29
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=27.92 E-value=83 Score=15.16 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=18.0
Q ss_pred eEEEE-ccCCCEEEEEEcCCCCeEE
Q 037967 20 YRRLV-LKNSLQVLLISDPDADKCA 43 (66)
Q Consensus 20 ~~~~~-L~NGl~v~~~~~~~~~~~~ 43 (66)
|-+.. -.+||.++=+++|..|...
T Consensus 13 yaYva~~~~Gl~IvDISnPs~P~~v 37 (42)
T PF08309_consen 13 YAYVADGNNGLVIVDISNPSNPVLV 37 (42)
T ss_pred EEEEEeCCCCEEEEECCCCCCCEEE
Confidence 44444 4589999999999988754
No 30
>smart00841 Elong-fact-P_C Elongation factor P, C-terminal. These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology PUBMED:15210970.
Probab=25.29 E-value=90 Score=16.19 Aligned_cols=17 Identities=12% Similarity=0.077 Sum_probs=13.3
Q ss_pred ccceEEEEccCCCEEEE
Q 037967 17 KRQYRRLVLKNSLQVLL 33 (66)
Q Consensus 17 ~~~~~~~~L~NGl~v~~ 33 (66)
...++..+|.||+++.+
T Consensus 18 ~~~~K~A~letG~~i~V 34 (56)
T smart00841 18 SGGTKPATLETGAVVQV 34 (56)
T ss_pred CCCcceEEECCCCEEEc
Confidence 35567889999998764
No 31
>PHA01971 hypothetical protein
Probab=24.88 E-value=77 Score=19.20 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=12.6
Q ss_pred ccceEEEEccCCCEEEE
Q 037967 17 KRQYRRLVLKNSLQVLL 33 (66)
Q Consensus 17 ~~~~~~~~L~NGl~v~~ 33 (66)
.--+...+|+||.+|.=
T Consensus 65 ~~TvCvl~L~NGF~VtG 81 (123)
T PHA01971 65 LLTFCVLVLRNGFTVTG 81 (123)
T ss_pred ceEEEEEEeCCCcEEEe
Confidence 34466788999998864
No 32
>cd03368 Ribosomal_S12 S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit interactions. S12 is essential for maintenance of a pretranslocation state and, together with S13, functions as a control element for the rRNA- and tRNA-driven movements of translocation. Antibiotics such as streptomycin bind S12 and cause the ribosome to misread the genetic code.
Probab=24.77 E-value=1.6e+02 Score=17.43 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=30.2
Q ss_pred ecCCCccceEEEEccCCCEEE-EEEcCCCCe-EEEEEEEcccCCCCCC
Q 037967 12 KPRTDKRQYRRLVLKNSLQVL-LISDPDADK-CAASMNVSVGAFCDPV 57 (66)
Q Consensus 12 k~~~d~~~~~~~~L~NGl~v~-~~~~~~~~~-~~~~~~v~~Gs~~ep~ 57 (66)
||-.-.+++-..+|.||-+|. +++-.+-.. -.-.+.++.|..-|-+
T Consensus 42 KPNSA~RKvarV~L~ngk~v~AyIPG~Ghnlqehs~VLvrGGrv~DlP 89 (108)
T cd03368 42 KPNSALRKVARVRLSNGKEVTAYIPGEGHNLQEHSVVLVRGGRVKDLP 89 (108)
T ss_pred CCChhheeeEEEEecCCCEEEEEcCCCCCCccccCEEEEeCCccCCCC
Confidence 344445788889999999886 445444333 2456778888876653
No 33
>PF08126 Propeptide_C25: Propeptide_C25; InterPro: IPR012600 This entry represents a propeptide domain found at the N-terminal end of some peptidases that belong to MEROPS peptidase family C25 (IPR001769 from INTERPRO). Little is known about its fuction.; GO: 0004197 cysteine-type endopeptidase activity
Probab=23.72 E-value=1.3e+02 Score=19.33 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=22.2
Q ss_pred CCccceEEEEccCCCEEEEEEcCCCCeEEEEEEEccc
Q 037967 15 TDKRQYRRLVLKNSLQVLLISDPDADKCAASMNVSVG 51 (66)
Q Consensus 15 ~d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~v~~G 51 (66)
.+...|..+.+++|-...-.-.|.+|..+..+.+..|
T Consensus 38 ~~~g~~~~I~~~~~~~~~~~G~P~LP~~~~~I~vP~~ 74 (202)
T PF08126_consen 38 TDGGIFQRISIPGGFNLSEPGEPELPVVSKSIAVPAG 74 (202)
T ss_pred ecCceEEEEEcCCCcccCCCCCCCCCEEEEEEEccCC
Confidence 3444566666666655554556666666666666664
No 34
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=23.59 E-value=1e+02 Score=18.88 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=17.1
Q ss_pred cceEEEEccCCCEEEEEEcCCC
Q 037967 18 RQYRRLVLKNSLQVLLISDPDA 39 (66)
Q Consensus 18 ~~~~~~~L~NGl~v~~~~~~~~ 39 (66)
-++-..+|+||.++++.++-+.
T Consensus 58 HQ~Fiv~l~~g~tllIahNIDl 79 (131)
T PF11948_consen 58 HQRFIVRLSSGQTLLIAHNIDL 79 (131)
T ss_pred ceEEEEEeCCCCEEEEEeccCc
Confidence 4466788999999999876544
No 35
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ]. These proteins share an approximately 180 residue C-terminal region which contains unsual G repreats [].
Probab=21.99 E-value=1.2e+02 Score=19.29 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=13.5
Q ss_pred eEEEEccCCCEEEEEEcCCC
Q 037967 20 YRRLVLKNSLQVLLISDPDA 39 (66)
Q Consensus 20 ~~~~~L~NGl~v~~~~~~~~ 39 (66)
....++|+|++++-.++...
T Consensus 57 T~~tt~pdG~ev~~FpngQ~ 76 (179)
T PF07202_consen 57 TTHTTYPDGLEVYEFPNGQI 76 (179)
T ss_pred EEEEEcCCCcEEEEeCCCce
Confidence 45567788888877666543
No 36
>PRK13490 chemoreceptor glutamine deamidase CheD; Provisional
Probab=21.88 E-value=44 Score=20.83 Aligned_cols=20 Identities=15% Similarity=0.390 Sum_probs=9.5
Q ss_pred EEcccCCCCCCCCCcceeeC
Q 037967 47 NVSVGAFCDPVGLEGLAHFL 66 (66)
Q Consensus 47 ~v~~Gs~~ep~~~~GlAHfl 66 (66)
+|.+=-.+.....-|++||+
T Consensus 30 CVav~l~dp~~~igGm~H~m 49 (162)
T PRK13490 30 CIGIALYDGIKCIGGLSHIM 49 (162)
T ss_pred eEEEEEEcCCCCEEEEEEEE
Confidence 33333333344566666663
No 37
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=21.27 E-value=2e+02 Score=17.24 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=19.4
Q ss_pred eeecCCCccceEEEEccCCCEEEEEEcCCCC
Q 037967 10 IIKPRTDKRQYRRLVLKNSLQVLLISDPDAD 40 (66)
Q Consensus 10 ~~k~~~d~~~~~~~~L~NGl~v~~~~~~~~~ 40 (66)
+..-..+.-+...++.+-|++.+++.++..+
T Consensus 67 ~~~~~T~~yklh~~eT~TGlKFvl~td~~~~ 97 (142)
T PF04099_consen 67 FESFETDTYKLHCFETPTGLKFVLITDPNVP 97 (142)
T ss_dssp EEEEEESS-EEEEEE-TTS-EEEEEE-TTCC
T ss_pred EEEEEeCCEEEEEEEcCcCcEEEEEecCCCc
Confidence 4444445555677778899999999999764
No 38
>PRK10775 cell division protein FtsQ; Provisional
Probab=20.20 E-value=1.2e+02 Score=20.37 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=14.6
Q ss_pred CCccceEEEEccCCCEEEE
Q 037967 15 TDKRQYRRLVLKNSLQVLL 33 (66)
Q Consensus 15 ~d~~~~~~~~L~NGl~v~~ 33 (66)
.+.+.-+..+|.||++|.+
T Consensus 193 l~~r~~W~l~L~nGi~v~L 211 (276)
T PRK10775 193 MTARRSWQLTLNNDIRLEL 211 (276)
T ss_pred EcCCCeEEEEeCCCeEEEE
Confidence 3455567779999999987
No 39
>PRK13487 chemoreceptor glutamine deamidase CheD; Provisional
Probab=20.08 E-value=56 Score=21.19 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=15.3
Q ss_pred EEEEEcccCCCCCCCCCcceeeC
Q 037967 44 ASMNVSVGAFCDPVGLEGLAHFL 66 (66)
Q Consensus 44 ~~~~v~~Gs~~ep~~~~GlAHfl 66 (66)
.+-+|.+--++.....-|++||+
T Consensus 44 LGSCVaV~l~Dp~~~iGGm~H~m 66 (201)
T PRK13487 44 LGSCVSACLRDPVLGIGGMNHFM 66 (201)
T ss_pred CcccEEEEEEcCCCCEEEEEEEE
Confidence 44555555556666788888885
Done!