BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037968
(115 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QHS|A Chain A, Structural Basis Of Octanoic Acid Recognition By
Lipoate-protein Ligase B
Length = 237
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 43 VSLGNSKVGGCDFFQGSWVRDDAYPLYDTSICPFIEREFDCLKNGRPDKLYLKYKWKPTA 102
++LG G F SW R++ + LY ++ER D +G P +L + Y P
Sbjct: 65 ITLGRKATGENLLFPESWYRENGFELY------WVERGGDVTYHG-PGQL-VGYPIFPVG 116
Query: 103 CELPRYKKHLD 113
E+ R+ + ++
Sbjct: 117 REVRRFLRQIE 127
>pdb|2QHT|A Chain A, Structural Basis Of Octanoic Acid Recognition By
Lipoate-Protein Ligase B
pdb|2QHU|A Chain A, Structural Basis Of Octanoic Acid Recognition By
Lipoate-Protein Ligase B
pdb|2QHV|A Chain A, Structural Basis Of Octanoic Acid Recognition By
Lipoate-protein Ligase B
Length = 210
Score = 28.5 bits (62), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 43 VSLGNSKVGGCDFFQGSWVRDDAYPLYDTSICPFIEREFDCLKNGRPDKLYLKYKWKPTA 102
++LG G F SW R++ + LY ++ER D +G P +L + Y P
Sbjct: 45 ITLGRKATGENLLFPESWYRENGFELY------WVERGGDVTYHG-PGQL-VGYPIFPVG 96
Query: 103 CELPRYKKHLD 113
E+ R+ + ++
Sbjct: 97 REVRRFLRQIE 107
>pdb|1PUO|A Chain A, Crystal Structure Of Fel D 1- The Major Cat Allergen
pdb|1PUO|B Chain B, Crystal Structure Of Fel D 1- The Major Cat Allergen
Length = 170
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 72 SICPFIEREFDCLKNGRPD---KLYLKYKWKPTACELPRYKKH 111
ICP ++R+ D G PD + +YK P E R K+
Sbjct: 93 EICPAVKRDVDLFLTGTPDEYVEQVAQYKALPVVLENARILKN 135
>pdb|1ZKR|A Chain A, Crystal Structure Of The Major Cat Allergen Fel D 1 (1+2)
pdb|1ZKR|B Chain B, Crystal Structure Of The Major Cat Allergen Fel D 1 (1+2)
pdb|2EJN|A Chain A, Structural Characterization Of The Tetrameric Form Of The
Major Cat Allergen Fel D 1
pdb|2EJN|B Chain B, Structural Characterization Of The Tetrameric Form Of The
Major Cat Allergen Fel D 1
Length = 153
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 72 SICPFIEREFDCLKNGRPD---KLYLKYKWKPTACELPRYKKH 111
ICP ++R+ D G PD + +YK P E R K+
Sbjct: 2 EICPAVKRDVDLFLTGTPDEYVEQVAQYKALPVVLENARILKN 44
>pdb|4ACQ|A Chain A, Alpha-2 Macroglobulin
pdb|4ACQ|B Chain B, Alpha-2 Macroglobulin
pdb|4ACQ|C Chain C, Alpha-2 Macroglobulin
pdb|4ACQ|D Chain D, Alpha-2 Macroglobulin
Length = 1451
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 18 VFVSCLHQYSDAAKVHDGDDQQLSDVSLGNSKVGGCDFFQ 57
V VS +YSDA+ H D Q + G GC F+Q
Sbjct: 241 VTVSICRKYSDASDCHGEDSQAFCEKFSGQLNSHGC-FYQ 279
>pdb|2CG8|A Chain A, The Bifunctional Dihydroneopterin Aldolase
6-Hydroxymethyl- 7,8-Dihydropterin Synthase From
Streptococcus Pneumoniae
pdb|2CG8|B Chain B, The Bifunctional Dihydroneopterin Aldolase
6-Hydroxymethyl- 7,8-Dihydropterin Synthase From
Streptococcus Pneumoniae
pdb|2CG8|C Chain C, The Bifunctional Dihydroneopterin Aldolase
6-Hydroxymethyl- 7,8-Dihydropterin Synthase From
Streptococcus Pneumoniae
pdb|2CG8|D Chain D, The Bifunctional Dihydroneopterin Aldolase
6-Hydroxymethyl- 7,8-Dihydropterin Synthase From
Streptococcus Pneumoniae
Length = 270
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 59 SWVRDDAYPLYDTSICPFIEREFDCLKNGRPDKLYLKYKWKPTACEL 105
+W ++ + L +T +ER F+ + KL LK W P L
Sbjct: 62 TWFQETSEDLIETVAYKLVERTFESYPLVQEMKLELKKPWAPVHLSL 108
>pdb|2OF7|A Chain A, Structural Genomics, The Crystal Structure Of A
Tetr-Family Transcriptional Regulator From Streptomyces
Coelicolor A3
Length = 260
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 48 SKVGGCDFFQGSWVRDDAYPLYDTSICPFIEREFDCLKNGRP 89
S VGG W D ++ S+ ++R D L+NG P
Sbjct: 192 SLVGGLXEVSRYWAEHD----HEESLAELVDRALDALENGLP 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.143 0.472
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,063,939
Number of Sequences: 62578
Number of extensions: 160311
Number of successful extensions: 281
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 8
length of query: 115
length of database: 14,973,337
effective HSP length: 78
effective length of query: 37
effective length of database: 10,092,253
effective search space: 373413361
effective search space used: 373413361
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)