Query 037968
Match_columns 115
No_of_seqs 142 out of 548
Neff 4.0
Searched_HMMs 29240
Date Mon Mar 25 10:14:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037968.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037968hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mwp_A Amyloid A4 protein; hep 18.7 43 0.0015 23.0 1.2 13 54-66 19-31 (96)
2 1jwi_A Bitiscetin; domain swap 14.7 50 0.0017 20.8 0.8 11 96-106 110-120 (131)
3 3ktm_A Amyloid beta A4 protein 12.5 74 0.0025 24.4 1.2 13 54-66 30-42 (191)
4 1mpz_A Obtustatin; disintegrin 12.1 1.1E+02 0.0039 17.4 1.7 13 73-85 9-21 (41)
5 1co7_I BPTI, bovine pancreatic 11.9 1E+02 0.0035 20.3 1.7 15 51-65 46-60 (99)
6 3nme_A Ptpkis1 protein, SEX4 g 11.7 79 0.0027 24.3 1.2 14 56-69 225-238 (294)
7 1h12_A Endo-1,4-beta-xylanase; 10.7 1.2E+02 0.004 25.0 1.9 13 91-103 119-133 (405)
8 3ren_A Glycosyl hydrolase, fam 9.0 1E+02 0.0034 25.2 0.9 16 87-102 91-106 (350)
9 2jot_A Huwentoxin-11; proteina 8.3 95 0.0032 18.3 0.4 12 52-63 12-23 (55)
10 1kwf_A Endoglucanase A; hydrol 8.0 1.2E+02 0.0041 24.4 1.0 20 84-103 88-107 (363)
No 1
>1mwp_A Amyloid A4 protein; heparin binding, sugar binding protein; 1.80A {Homo sapiens} SCOP: d.170.2.1
Probab=18.68 E-value=43 Score=23.03 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=10.2
Q ss_pred cceeccEEeCCCC
Q 037968 54 DFFQGSWVRDDAY 66 (115)
Q Consensus 54 D~~~G~WV~D~s~ 66 (115)
|+-+|+|+.|++.
T Consensus 19 ~~~~G~W~~D~~~ 31 (96)
T 1mwp_A 19 NVQNGKWDSDPSG 31 (96)
T ss_dssp CTTTCCEEECTTS
T ss_pred cccCCceeeCCCC
Confidence 3457999999875
No 2
>1jwi_A Bitiscetin; domain swapping, C-type lectin, toxin; 2.00A {Bitis arietans} SCOP: d.169.1.1 PDB: 1uex_A
Probab=14.69 E-value=50 Score=20.84 Aligned_cols=11 Identities=18% Similarity=0.552 Sum_probs=7.3
Q ss_pred eeeecCCCCCC
Q 037968 96 YKWKPTACELP 106 (115)
Q Consensus 96 wRWqP~~C~LP 106 (115)
..|....|+..
T Consensus 110 ~~w~~~~C~~~ 120 (131)
T 1jwi_A 110 RTWTDLPCGEK 120 (131)
T ss_dssp SSEEEECTTSC
T ss_pred CeEcCcCCCCC
Confidence 46777777653
No 3
>3ktm_A Amyloid beta A4 protein; protein structure, alzheimer disease, amyloidosis, apoptosis, cell adhesion, copper, disease mutation, disulfi endocytosis; 2.70A {Homo sapiens} PDB: 1owt_A 2fkl_A
Probab=12.49 E-value=74 Score=24.36 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=10.0
Q ss_pred cceeccEEeCCCC
Q 037968 54 DFFQGSWVRDDAY 66 (115)
Q Consensus 54 D~~~G~WV~D~s~ 66 (115)
|+-.|+|+.|+++
T Consensus 30 ~~~tG~W~~Dp~~ 42 (191)
T 3ktm_A 30 NVQNGKWDSDPSG 42 (191)
T ss_dssp CTTTSCEEECTTS
T ss_pred ccccCceecCCCc
Confidence 4456999999864
No 4
>1mpz_A Obtustatin; disintegrin, hydrolase; NMR {Macrovipera lebetina obtusa} SCOP: g.20.1.1 PDB: 2w9w_A 2w9v_A
Probab=12.09 E-value=1.1e+02 Score=17.40 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=8.9
Q ss_pred CCCCcccccchhh
Q 037968 73 ICPFIEREFDCLK 85 (115)
Q Consensus 73 ~Cpfi~~~~nC~~ 85 (115)
+|.|...+.-|+.
T Consensus 9 ~C~f~~~g~~CR~ 21 (41)
T 1mpz_A 9 QCKLKPAGTTCWK 21 (41)
T ss_dssp TTBCSSSCCTTCC
T ss_pred CCcEeCCCCcccc
Confidence 4777777777765
No 5
>1co7_I BPTI, bovine pancreatic trypsin inhibitor; complex (serine protease/inhibitor), hydrolase/hydrolase inhibitor complex; 1.90A {Bos taurus} SCOP: g.8.1.1
Probab=11.95 E-value=1e+02 Score=20.31 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=11.0
Q ss_pred CCccceeccEEeCCC
Q 037968 51 GGCDFFQGSWVRDDA 65 (115)
Q Consensus 51 ~~CD~~~G~WV~D~s 65 (115)
+.|.-..=+|.||..
T Consensus 46 G~C~~~~~rw~yd~~ 60 (99)
T 1co7_I 46 GPCKARIIRYFYNAK 60 (99)
T ss_dssp CSBCCCEEEEEET--
T ss_pred CCCCCceeEEEEECC
Confidence 369888889999974
No 6
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=11.73 E-value=79 Score=24.30 Aligned_cols=14 Identities=29% Similarity=0.881 Sum_probs=12.0
Q ss_pred eeccEEeCCCCCCc
Q 037968 56 FQGSWVRDDAYPLY 69 (115)
Q Consensus 56 ~~G~WV~D~s~PlY 69 (115)
.+|.|+.|+..|.+
T Consensus 225 VDG~w~~d~~~~~~ 238 (294)
T 3nme_A 225 IDGEWTHNEAEPFI 238 (294)
T ss_dssp ETTEEECCTTSCEE
T ss_pred ECCEEeeCCCCCee
Confidence 46999999998876
No 7
>1h12_A Endo-1,4-beta-xylanase; hydrolase, xylan degradation, psychrophilic, cold adaptation, temperature, glycosyl hydrolase, family 8; HET: XYP XYS; 1.2A {Pseudoalteromonas haloplanktis} SCOP: a.102.1.2 PDB: 1h13_A 1xw2_A 1xwq_A* 1h14_A 1xwt_A 2b4f_A* 2a8z_A*
Probab=10.70 E-value=1.2e+02 Score=24.98 Aligned_cols=13 Identities=8% Similarity=0.079 Sum_probs=11.6
Q ss_pred CCCceeee--ecCCC
Q 037968 91 KLYLKYKW--KPTAC 103 (115)
Q Consensus 91 ~~yl~wRW--qP~~C 103 (115)
.+++.||| +|+++
T Consensus 119 ~~l~aW~~g~~~~g~ 133 (405)
T 1h12_A 119 QGVYAWKLKLNQNGF 133 (405)
T ss_dssp TTCBEEEEEECTTSC
T ss_pred ccceEEEeccCCCCC
Confidence 67889999 99987
No 8
>3ren_A Glycosyl hydrolase, family 8; (alpha/alpha)6-barrel fold, alpha-amylase; 2.00A {Clostridium perfringens}
Probab=8.98 E-value=1e+02 Score=25.20 Aligned_cols=16 Identities=6% Similarity=0.036 Sum_probs=12.6
Q ss_pred CCCCCCCceeeeecCC
Q 037968 87 GRPDKLYLKYKWKPTA 102 (115)
Q Consensus 87 GRpD~~yl~wRWqP~~ 102 (115)
-+-|..+..|||.|.+
T Consensus 91 ~l~~~~L~sWr~~~~~ 106 (350)
T 3ren_A 91 MRLKNGLISWRKEGDE 106 (350)
T ss_dssp TBCTTSSBCSEEETTE
T ss_pred HhccCCceEEEECCCC
Confidence 3337889999999986
No 9
>2jot_A Huwentoxin-11; proteinase inhibitor; NMR {Ornithoctonus huwena}
Probab=8.34 E-value=95 Score=18.30 Aligned_cols=12 Identities=17% Similarity=0.401 Sum_probs=10.2
Q ss_pred CccceeccEEeC
Q 037968 52 GCDFFQGSWVRD 63 (115)
Q Consensus 52 ~CD~~~G~WV~D 63 (115)
.|.-..=+|-+|
T Consensus 12 ~C~~~~~r~~yd 23 (55)
T 2jot_A 12 RCKASFERWYFN 23 (55)
T ss_dssp CTTCCCEEEEEE
T ss_pred cCCCCcceEEEc
Confidence 688888889998
No 10
>1kwf_A Endoglucanase A; hydrolase, inverting glycosidase, atomic resolution, protein-carbohydrate interactions, reaction mechanism, cellulase; HET: BGC; 0.94A {Clostridium thermocellum} SCOP: a.102.1.2 PDB: 1is9_A 1cem_A
Probab=8.00 E-value=1.2e+02 Score=24.36 Aligned_cols=20 Identities=5% Similarity=0.042 Sum_probs=14.6
Q ss_pred hhcCCCCCCCceeeeecCCC
Q 037968 84 LKNGRPDKLYLKYKWKPTAC 103 (115)
Q Consensus 84 ~~nGRpD~~yl~wRWqP~~C 103 (115)
.++-+.+.++..|||+|++-
T Consensus 88 t~~~~~~~~l~aW~~~~~g~ 107 (363)
T 1kwf_A 88 VKSHFNGNGLMHWHIDANNN 107 (363)
T ss_dssp HHTTBCTTSSBCSEECTTSC
T ss_pred HHHhcCCCCCeEEEECCCCC
Confidence 34444567789999999875
Done!