Query 037968
Match_columns 115
No_of_seqs 142 out of 548
Neff 4.0
Searched_HMMs 13730
Date Mon Mar 25 10:15:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037968.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037968hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1mkna_ g.5.1.1 (A:) Midkine, 31.9 9.4 0.00068 22.9 1.5 17 84-100 6-22 (59)
2 d2j7ja3 g.37.1.1 (A:58-85) Tra 22.7 11 0.0008 19.4 0.5 17 66-82 2-18 (28)
3 d1mwpa_ d.170.2.1 (A:) N-termi 20.4 18 0.0013 23.4 1.2 13 54-66 19-31 (96)
4 d2qlvb1 b.1.18.21 (B:161-247) 19.2 17 0.0013 21.5 0.9 13 56-68 59-71 (87)
5 d1guqa1 d.13.1.2 (A:2-177) Gal 17.1 41 0.003 22.6 2.7 9 54-62 14-22 (176)
6 d2c9aa1 b.1.1.4 (A:184-279) Re 13.9 32 0.0023 19.5 1.2 25 80-104 20-44 (96)
7 d1z0na1 b.1.18.21 (A:77-163) 5 12.1 35 0.0026 20.2 1.0 13 56-68 53-65 (87)
8 d2glia2 g.37.1.1 (A:135-167) F 11.6 51 0.0037 17.3 1.5 15 73-91 4-18 (33)
9 d1oz7b_ d.169.1.1 (B:) Snake c 11.4 38 0.0028 20.1 1.0 41 56-106 73-114 (123)
10 d1m3ya2 b.121.2.3 (A:222-437) 11.0 18 0.0013 24.3 -0.7 17 97-113 141-158 (216)
No 1
>d1mkna_ g.5.1.1 (A:) Midkine, a heparin-binding growth factor, N-terminal domain {Synthetic}
Probab=31.94 E-value=9.4 Score=22.92 Aligned_cols=17 Identities=29% Similarity=0.790 Sum_probs=14.7
Q ss_pred hhcCCCCCCCceeeeec
Q 037968 84 LKNGRPDKLYLKYKWKP 100 (115)
Q Consensus 84 ~~nGRpD~~yl~wRWqP 100 (115)
.+.++|-++-..|||.|
T Consensus 6 ~K~~g~gs~C~eW~wg~ 22 (59)
T d1mkna_ 6 VKKGGPGSECAEWAWGP 22 (59)
T ss_dssp CSSSCCCCCCSSSEEEC
T ss_pred ccccCCccccccccccc
Confidence 46789999999999987
No 2
>d2j7ja3 g.37.1.1 (A:58-85) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=22.74 E-value=11 Score=19.44 Aligned_cols=17 Identities=24% Similarity=0.753 Sum_probs=12.3
Q ss_pred CCCcCCCCCCCcccccc
Q 037968 66 YPLYDTSICPFIEREFD 82 (115)
Q Consensus 66 ~PlY~~~~Cpfi~~~~n 82 (115)
||--..++|+|+.+.|.
T Consensus 2 ypc~kd~tc~fvgktwt 18 (28)
T d2j7ja3 2 YPCKKDDSCSFVGKTWT 18 (28)
T ss_dssp EECCSCSSCCCEESSHH
T ss_pred CCCccCCcccccchhHH
Confidence 45556788999887663
No 3
>d1mwpa_ d.170.2.1 (A:) N-terminal domain of the amyloid precursor protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.39 E-value=18 Score=23.38 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=10.0
Q ss_pred cceeccEEeCCCC
Q 037968 54 DFFQGSWVRDDAY 66 (115)
Q Consensus 54 D~~~G~WV~D~s~ 66 (115)
|+-.|+|+.|+++
T Consensus 19 ~~~~G~W~~D~s~ 31 (96)
T d1mwpa_ 19 NVQNGKWDSDPSG 31 (96)
T ss_dssp CTTTCCEEECTTS
T ss_pred cccCCceeeCCCC
Confidence 3446999999874
No 4
>d2qlvb1 b.1.18.21 (B:161-247) SIP2 {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=19.21 E-value=17 Score=21.52 Aligned_cols=13 Identities=15% Similarity=0.159 Sum_probs=10.8
Q ss_pred eeccEEeCCCCCC
Q 037968 56 FQGSWVRDDAYPL 68 (115)
Q Consensus 56 ~~G~WV~D~s~Pl 68 (115)
.+|.|+.|+..|.
T Consensus 59 VDG~w~~d~~~p~ 71 (87)
T d2qlvb1 59 VDNELRVSDFLPT 71 (87)
T ss_dssp ETTEEECCTTSCE
T ss_pred ECCcEEcCCCCCe
Confidence 4799999998884
No 5
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate uridylyltransferase {Escherichia coli [TaxId: 562]}
Probab=17.08 E-value=41 Score=22.57 Aligned_cols=9 Identities=22% Similarity=0.826 Sum_probs=6.8
Q ss_pred cceeccEEe
Q 037968 54 DFFQGSWVR 62 (115)
Q Consensus 54 D~~~G~WV~ 62 (115)
|...|+||.
T Consensus 14 dpLt~~wVi 22 (176)
T d1guqa1 14 NPLTGQWIL 22 (176)
T ss_dssp ETTTTEEEE
T ss_pred cccCCCEEE
Confidence 556789986
No 6
>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.93 E-value=32 Score=19.47 Aligned_cols=25 Identities=16% Similarity=0.093 Sum_probs=19.6
Q ss_pred ccchhhcCCCCCCCceeeeecCCCC
Q 037968 80 EFDCLKNGRPDKLYLKYKWKPTACE 104 (115)
Q Consensus 80 ~~nC~~nGRpD~~yl~wRWqP~~C~ 104 (115)
.+.|.-.|.|.....-|+|.-.+=.
T Consensus 20 ~l~C~~~g~p~p~~~~~~~~~~~~~ 44 (96)
T d2c9aa1 20 TFQCSAIGRTVAGDRLWLQGIDVRD 44 (96)
T ss_dssp EEEEEEESCCCSSCEEEEEETTBCC
T ss_pred EEEEEEeecCCCcEEEEEeeeeeee
Confidence 3889999999888888888765433
No 7
>d1z0na1 b.1.18.21 (A:77-163) 5'-AMP-activated protein kinase subunit beta-1 {Rattus norvegicus [TaxId: 10116]}
Probab=12.10 E-value=35 Score=20.23 Aligned_cols=13 Identities=31% Similarity=0.907 Sum_probs=10.7
Q ss_pred eeccEEeCCCCCC
Q 037968 56 FQGSWVRDDAYPL 68 (115)
Q Consensus 56 ~~G~WV~D~s~Pl 68 (115)
.+|+|+.|+..|.
T Consensus 53 VDG~w~~d~~~~~ 65 (87)
T d1z0na1 53 VDGQWTHDPSEPI 65 (87)
T ss_dssp ETTEEECCTTSCE
T ss_pred ECCEEEeCCCCCe
Confidence 4799999988774
No 8
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.64 E-value=51 Score=17.28 Aligned_cols=15 Identities=33% Similarity=0.702 Sum_probs=11.1
Q ss_pred CCCCcccccchhhcCCCCC
Q 037968 73 ICPFIEREFDCLKNGRPDK 91 (115)
Q Consensus 73 ~Cpfi~~~~nC~~nGRpD~ 91 (115)
.|-+ .+|.++|+|=.
T Consensus 4 ~C~W----~~C~R~~~pf~ 18 (33)
T d2glia2 4 VCHW----GGCSRELRPFK 18 (33)
T ss_dssp CCCB----TTCTTTTCCCS
T ss_pred EEEC----CCCCCCCCcch
Confidence 4655 68999999854
No 9
>d1oz7b_ d.169.1.1 (B:) Snake coagglutinin beta chain {Saw-scaled viper (Echis carinatus), echicetin [TaxId: 40353]}
Probab=11.42 E-value=38 Score=20.05 Aligned_cols=41 Identities=20% Similarity=0.494 Sum_probs=25.6
Q ss_pred eeccEEeCCCCC-CcCCCCCCCcccccchhhcCCCCCCCceeeeecCCCCCC
Q 037968 56 FQGSWVRDDAYP-LYDTSICPFIEREFDCLKNGRPDKLYLKYKWKPTACELP 106 (115)
Q Consensus 56 ~~G~WV~D~s~P-lY~~~~Cpfi~~~~nC~~nGRpD~~yl~wRWqP~~C~LP 106 (115)
..|.|+..+..| -|++ + .++.+|....+.+ .+|....|+.+
T Consensus 73 ~~~~~~W~dg~~~~y~n----W-~~~~~C~~~~~~~-----~~W~~~~C~~~ 114 (123)
T d1oz7b_ 73 RDCNWEWSDGAQLDYKA----W-DNERHCFIYKNTD-----NQWTRRDCTWT 114 (123)
T ss_dssp CGGGEEETTCCCCCSCC----B-CSSTTEEEEEGGG-----TEEEEECTTSC
T ss_pred cccceeccCCCEeeccc----c-CCCCCEEEEECCC-----CEEEeeCCCCc
Confidence 368888876544 3554 2 3455677654422 36999999865
No 10
>d1m3ya2 b.121.2.3 (A:222-437) Major capsid protein vp54 {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}
Probab=11.03 E-value=18 Score=24.30 Aligned_cols=17 Identities=18% Similarity=0.440 Sum_probs=13.6
Q ss_pred eeecCC-CCCCCCCcccC
Q 037968 97 KWKPTA-CELPRYKKHLD 113 (115)
Q Consensus 97 RWqP~~-C~LPrFd~~~f 113 (115)
.|||+| |+.-|+|-..+
T Consensus 141 ~~qPSGs~NfSri~~~~l 158 (216)
T d1m3ya2 141 GRQPSGTCNFSRIDNATL 158 (216)
T ss_dssp CSSCCCCEETTSCSCEEE
T ss_pred ccCCCcceeccccceEEE
Confidence 589998 99999886543
Done!