BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037969
(300 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 171 FECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS 217
F QL+ L++S N +E +P+++F G ++D++R R+ SLPS
Sbjct: 174 FNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPS 219
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 35.4 bits (80), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 171 FECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS 217
F QL+ L++S N +E +P+++F G ++D++R R+ SLPS
Sbjct: 174 FNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPS 219
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.4 bits (80), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 196 FKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNS 255
G+++++ +DLT ++ + + + L+NLQ L LD + + +I+ + L NL+ LS N+
Sbjct: 103 IAGLQSIKTLDLTSTQITDV-TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA 161
Query: 256 DIVRL 260
+ L
Sbjct: 162 QVSDL 166
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 196 FKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNS 255
G+++++ +DLT ++ + GL +NLQ L LD + + +I+ + L NL+ LS N+
Sbjct: 109 IAGLQSIKTLDLTSTQITDVTPLAGL-SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNN 167
Query: 256 DI 257
+
Sbjct: 168 QV 169
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 156 AISLLNSSIHEVSEE-FECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214
A+ L N I +S F+ L L+++ N+ E +P I K + LRV+DL+ RL S
Sbjct: 228 ALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTE--LPAEI-KNLSNLRVLDLSHNRLTS 284
Query: 215 LPSSIGLLANLQTLCLDQSMLGDIAI-IGKLKNLEILS 251
LP+ +G L+ +M+ + G L NL+ L
Sbjct: 285 LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLG 322
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 14/116 (12%)
Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210
L + ++L N+ I ++ L L +S NT +++ G+ +L+ ++ +
Sbjct: 106 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA----LSGLTSLQQLNFSSN 161
Query: 211 RLFSLPSSIGLLANLQTL---CLDQSMLGDIAIIGKLKNLEILSFLN---SDIVRL 260
++ L LANL TL + + + DI+++ KL NLE L N SDI L
Sbjct: 162 QVTDLKP----LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 213
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 147 DEDALKKCSAISLL---NSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLR 203
D D LK + ++ L +++I ++S L+ L+ S N ++ P + TL
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLK-P---LANLTTLE 176
Query: 204 VIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSF 252
+D++ ++ + S + L NL++L + + DI +G L NL+ LS
Sbjct: 177 RLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 224
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 14/116 (12%)
Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210
L + ++L N+ I ++ L L +S NT +++ G+ +L+ + +
Sbjct: 106 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA----LSGLTSLQQLSFSSN 161
Query: 211 RLFSLPSSIGLLANLQTL---CLDQSMLGDIAIIGKLKNLEILSFLN---SDIVRL 260
++ L LANL TL + + + DI+++ KL NLE L N SDI L
Sbjct: 162 QVTDLKP----LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 213
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 8/109 (7%)
Query: 147 DEDALKKCSAISLL---NSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLR 203
D D LK + ++ L +++I ++S L+ L S N ++ P + TL
Sbjct: 121 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLK-P---LANLTTLE 176
Query: 204 VIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSF 252
+D++ ++ + S + L NL++L + + DI +G L NL+ LS
Sbjct: 177 RLDISSNKVSDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSL 224
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 31.6 bits (70), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 54/116 (46%), Gaps = 14/116 (12%)
Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210
L + ++L N+ I ++ L L +S NT +++ G+ +L+ + +
Sbjct: 106 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA----LSGLTSLQQLSFSSN 161
Query: 211 RLFSLPSSIGLLANLQTL---CLDQSMLGDIAIIGKLKNLEILSFLN---SDIVRL 260
++ L LANL TL + + + DI+++ KL NLE L N SDI L
Sbjct: 162 QVTDLKP----LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 213
>pdb|4FD0|A Chain A, Crystal Structure Of A Leucine Rich Hypothetical Protein
(Baccac_03700) From Bacteroides Caccae Atcc 43185 At
2.07 A Resolution
Length = 404
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 19/105 (18%)
Query: 149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLT 208
+ L+ + NS++ EV QLE +NIF + L+ DL+
Sbjct: 147 EGLQSIGDXAFFNSTVQEVVFPTTLEQLE---------------ENIFYYCRNLKKADLS 191
Query: 209 RMRLFSLPSSIGLLANLQTLCLDQSM--LGDIAII--GKLKNLEI 249
R +L LP+S + A ++ + L ++ +G A + +LK +EI
Sbjct: 192 RTKLTKLPASTFVYAGVEEVLLPATLKEIGAQAFLKTSQLKTIEI 236
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQS 233
QL L +SQN ++PD +F + L ++ L +L SLP+ + L L+ L LD +
Sbjct: 53 QLTKLSLSQNQIQ--SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN 110
Query: 234 MLGDI--AIIGKLKNLE 248
L + I +L +L+
Sbjct: 111 QLKSVPDGIFDRLTSLQ 127
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 12/107 (11%)
Query: 155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214
+ IS +N +H QLE L++ N ++ + + K + TL + D R+
Sbjct: 120 NGISDINGLVH-------LPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQIRRIVP 171
Query: 215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLP 261
L L LQ L L ++ + D+ + LKNL++L + + + P
Sbjct: 172 L----ARLTKLQNLYLSKNHISDLRALRGLKNLDVLELFSQEALNKP 214
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214
+ IS +N +H QLE L++ N ++ + + K + TL + D +
Sbjct: 119 NGISDINGLVH-------LPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQISDIVP 170
Query: 215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLP 261
L L LQ L L ++ + D+ + LKNL++L + + + P
Sbjct: 171 LAG----LTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 213
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210
L + ++L N+ I ++ L L +S NT +++ G+ +L+ ++
Sbjct: 106 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA----LSGLTSLQ-----QL 156
Query: 211 RLFSLPSSIGLLANLQTL---CLDQSMLGDIAIIGKLKNLEILSFLN---SDIVRL 260
+ + + LANL TL + + + DI+++ KL NLE L N SDI L
Sbjct: 157 NFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 212
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210
L + ++L N+ I ++ L L +S NT +++ G+ +L+ ++
Sbjct: 106 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA----LSGLTSLQ-----QL 156
Query: 211 RLFSLPSSIGLLANLQTL---CLDQSMLGDIAIIGKLKNLEILSFLN---SDIVRL 260
+ + + LANL TL + + + DI+++ KL NLE L N SDI L
Sbjct: 157 NFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 212
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210
L + ++L N+ I ++ L L +S NT +++ G+ +L+ ++
Sbjct: 111 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA----LSGLTSLQ-----QL 161
Query: 211 RLFSLPSSIGLLANLQTL---CLDQSMLGDIAIIGKLKNLEILSFLN---SDIVRL 260
+ + + LANL TL + + + DI+++ KL NLE L N SDI L
Sbjct: 162 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 217
>pdb|2WZV|A Chain A, Crystal Structure Of The Fmn-Dependent Nitroreductase Nfnb
From Mycobacterium Smegmatis
pdb|2WZV|B Chain B, Crystal Structure Of The Fmn-Dependent Nitroreductase Nfnb
From Mycobacterium Smegmatis
pdb|2WZW|A Chain A, Crystal Structure Of The Fmn-Dependent Nitroreductase Nfnb
From Mycobacterium Smegmatis In Complex With Nadph
pdb|2WZW|B Chain B, Crystal Structure Of The Fmn-Dependent Nitroreductase Nfnb
From Mycobacterium Smegmatis In Complex With Nadph
Length = 235
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 70 FKYSMGLGIFQGV--NRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVY 121
F Y GL FQGV R D ++LYA + RD LL+G ++E + +
Sbjct: 91 FPYREGL--FQGVLQERRADFGSRLYAALGIARDQTDLLQGYNTESLRFYGAPH 142
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 15/116 (12%)
Query: 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210
L + ++L N+ I ++ L L +S NT +++ G+ +L+ ++
Sbjct: 110 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA----LSGLTSLQ-----QL 160
Query: 211 RLFSLPSSIGLLANLQTL---CLDQSMLGDIAIIGKLKNLEILSFLN---SDIVRL 260
+ + + LANL TL + + + DI+++ KL NLE L N SDI L
Sbjct: 161 SFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 216
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 161 NSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL---PS 217
NS+I ++ L+ LH+S N +++ K + L + + R RL +L PS
Sbjct: 50 NSNIQSLAGMQFFTNLKELHLSHNQISDLSP----LKDLTKLEELSVNRNRLKNLNGIPS 105
Query: 218 SIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDI 257
A L L LD + L D + LKNLEILS N+ +
Sbjct: 106 -----ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKL 140
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI 219
L L++ N F E IP +FK + L++IDL L +LP+S+
Sbjct: 547 HLHILNLESNGFDE--IPVEVFKDLFELKIIDLGLNNLNTLPASV 589
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI 219
L L++ N F E IP +FK + L++IDL L +LP+S+
Sbjct: 537 HLHILNLESNGFDE--IPVEVFKDLFELKIIDLGLNNLNTLPASV 579
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI 219
L L++ N F E IP +FK + L++IDL L +LP+S+
Sbjct: 542 HLHILNLESNGFDE--IPVEVFKDLFELKIIDLGLNNLNTLPASV 584
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214
+ IS +N +H QLE L++ N ++ + + K + TL + D +
Sbjct: 122 NGISDINGLVH-------LPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQISDIVP 173
Query: 215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLP 261
L L LQ L L ++ + D+ + LKNL++L + + + P
Sbjct: 174 LAG----LTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 216
>pdb|4GM6|A Chain A, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|B Chain B, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|C Chain C, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|D Chain D, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|E Chain E, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
pdb|4GM6|F Chain F, Crystal Structure Of Pfkb Family Carbohydrate
Kinase(Target Efi-502146 From Listeria Grayi Dsm 20601
Length = 351
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 97 HELRDSCLLLEGD--SSEQFSMHDVVYDVVVSIACRDQHVFLVRNEVVWEWPDEDALKKC 154
H L L +G+ SE+++ +Y +V + D + V + ++ EW ++ +K
Sbjct: 261 HHLLQGHLWTQGECWESEEYA----IYPIVDRVGGGDAYTAAVLHGILSEWRPDETVKFA 316
Query: 155 SAISLLNSSIH 165
+A + L SIH
Sbjct: 317 TAAAGLKHSIH 327
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 15/109 (13%)
Query: 158 SLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS 217
SL + + H ++ +L L+++ N +P IFK +K L + +T +L +LP
Sbjct: 51 SLPSKAFHRLT------KLRLLYLNDNKLQ--TLPAGIFKELKNLETLWVTDNKLQALP- 101
Query: 218 SIGL---LANLQTLCLDQSMLGDIA--IIGKLKNLEILSFLNSDIVRLP 261
IG+ L NL L LD++ L + + L L LS +++ LP
Sbjct: 102 -IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP 149
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 28.1 bits (61), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 191 IPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTLCLDQSMLGDI--AIIGKLKNL 247
+PD +F + L + L +L SLP + L NL L LD + L + + KL L
Sbjct: 124 LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQL 183
Query: 248 EILSFLNSDIVRLP 261
+ LS ++ + +P
Sbjct: 184 KQLSLNDNQLKSVP 197
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214
+ IS +N +H QLE L++ N ++ + + K + TL + D +
Sbjct: 120 NGISDINGLVH-------LPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQISDIVP 171
Query: 215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLP 261
L L LQ L L ++ + D+ + LKNL++L + + + P
Sbjct: 172 LAG----LTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 214
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 12/107 (11%)
Query: 155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214
+ IS +N +H QLE L++ N ++ + + K + TL + D +
Sbjct: 122 NGISDINGLVH-------LPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQISDIVP 173
Query: 215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLP 261
L L LQ L L ++ + D+ + LKNL++L + + + P
Sbjct: 174 LAG----LTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 216
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 162 SSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGL 221
+ I +++ QLE L++ N ++ + + K + TL + D + L
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQISDIVPLAG---- 194
Query: 222 LANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLP 261
L LQ L L ++ + D+ + LKNL++L + + + P
Sbjct: 195 LTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 234
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 162 SSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGL 221
+ I +++ QLE L++ N ++ + + K + TL + D + L
Sbjct: 140 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTLSLEDNQISDIVPLAG---- 194
Query: 222 LANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLP 261
L LQ L L ++ + D+ + LKNL++L + + + P
Sbjct: 195 LTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,630,799
Number of Sequences: 62578
Number of extensions: 286834
Number of successful extensions: 616
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 566
Number of HSP's gapped (non-prelim): 75
length of query: 300
length of database: 14,973,337
effective HSP length: 98
effective length of query: 202
effective length of database: 8,840,693
effective search space: 1785819986
effective search space used: 1785819986
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)