Query 037969
Match_columns 300
No_of_seqs 276 out of 2651
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 06:13:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.2E-44 4.8E-49 340.6 12.3 275 1-279 363-653 (889)
2 PLN03210 Resistant to P. syrin 100.0 9.2E-28 2E-32 237.8 17.7 272 1-300 396-711 (1153)
3 KOG0617 Ras suppressor protein 99.8 6.1E-21 1.3E-25 143.3 -3.9 140 149-293 53-196 (264)
4 KOG0617 Ras suppressor protein 99.7 2E-20 4.4E-25 140.5 -4.1 153 143-300 24-180 (264)
5 PLN00113 leucine-rich repeat r 99.6 7E-15 1.5E-19 145.4 12.6 145 151-298 139-289 (968)
6 PLN00113 leucine-rich repeat r 99.6 6.2E-15 1.3E-19 145.8 12.2 147 150-300 116-267 (968)
7 KOG0444 Cytoskeletal regulator 99.6 1E-16 2.2E-21 142.4 -4.4 154 142-300 211-369 (1255)
8 KOG0444 Cytoskeletal regulator 99.5 1.2E-15 2.6E-20 135.7 0.6 147 149-299 100-251 (1255)
9 KOG4194 Membrane glycoprotein 99.4 3.8E-14 8.2E-19 125.2 -0.7 147 151-300 220-372 (873)
10 KOG0472 Leucine-rich repeat pr 99.4 5.3E-14 1.1E-18 119.1 0.1 126 157-287 417-545 (565)
11 KOG0472 Leucine-rich repeat pr 99.4 5.4E-14 1.2E-18 119.1 -1.4 141 155-300 391-535 (565)
12 PF14580 LRR_9: Leucine-rich r 99.3 1.6E-12 3.5E-17 101.2 5.3 123 151-277 18-149 (175)
13 KOG4194 Membrane glycoprotein 99.3 2.6E-12 5.7E-17 113.8 5.6 148 149-299 99-251 (873)
14 PF14580 LRR_9: Leucine-rich r 99.3 4.9E-12 1.1E-16 98.5 5.3 134 161-299 6-146 (175)
15 PLN03210 Resistant to P. syrin 99.3 3.7E-11 8.1E-16 120.2 11.8 131 151-286 588-722 (1153)
16 PRK15370 E3 ubiquitin-protein 99.2 1E-10 2.2E-15 110.7 12.2 35 201-237 263-297 (754)
17 PRK15370 E3 ubiquitin-protein 99.2 5.1E-11 1.1E-15 112.7 9.8 119 135-264 183-302 (754)
18 KOG1259 Nischarin, modulator o 99.2 1.2E-12 2.6E-17 107.2 -1.0 132 149-285 281-415 (490)
19 KOG0532 Leucine-rich repeat (L 99.2 8.3E-13 1.8E-17 116.4 -3.8 140 153-299 99-240 (722)
20 PRK15387 E3 ubiquitin-protein 99.1 2.5E-10 5.4E-15 107.8 9.9 69 224-300 383-452 (788)
21 KOG0618 Serine/threonine phosp 99.1 4.4E-12 9.6E-17 117.5 -2.0 81 198-279 381-463 (1081)
22 PF00931 NB-ARC: NB-ARC domain 99.1 3.1E-12 6.6E-17 109.2 -3.8 80 1-82 203-285 (287)
23 KOG4237 Extracellular matrix p 99.1 7.4E-11 1.6E-15 100.1 3.5 61 239-300 268-329 (498)
24 KOG0618 Serine/threonine phosp 99.1 1.2E-11 2.5E-16 114.8 -1.4 129 149-280 356-488 (1081)
25 PRK15387 E3 ubiquitin-protein 99.0 2.5E-09 5.5E-14 101.1 12.2 94 136-237 207-316 (788)
26 KOG0532 Leucine-rich repeat (L 99.0 3.2E-11 7E-16 106.6 -1.6 134 149-287 118-252 (722)
27 COG4886 Leucine-rich repeat (L 99.0 3.9E-10 8.4E-15 100.7 5.1 159 136-300 122-284 (394)
28 PLN03150 hypothetical protein; 98.9 5.6E-09 1.2E-13 98.1 8.9 108 176-285 420-532 (623)
29 COG4886 Leucine-rich repeat (L 98.9 1.2E-09 2.5E-14 97.6 3.8 147 149-300 113-262 (394)
30 KOG4658 Apoptotic ATPase [Sign 98.9 1.8E-09 3.8E-14 104.0 4.6 131 165-300 514-649 (889)
31 PLN03150 hypothetical protein; 98.8 1.1E-08 2.3E-13 96.3 8.4 97 201-298 419-520 (623)
32 cd00116 LRR_RI Leucine-rich re 98.8 4.3E-09 9.3E-14 91.1 4.7 147 152-300 108-285 (319)
33 cd00116 LRR_RI Leucine-rich re 98.8 8.6E-09 1.9E-13 89.2 6.2 149 150-300 79-257 (319)
34 PF13855 LRR_8: Leucine rich r 98.8 5.5E-09 1.2E-13 67.1 3.7 58 175-234 2-60 (61)
35 KOG1259 Nischarin, modulator o 98.8 1.8E-09 4E-14 88.9 1.4 121 174-300 284-406 (490)
36 KOG4237 Extracellular matrix p 98.7 4.7E-10 1E-14 95.3 -3.1 140 137-279 53-199 (498)
37 PF13855 LRR_8: Leucine rich r 98.7 2E-08 4.3E-13 64.4 3.7 56 201-256 2-60 (61)
38 KOG3207 Beta-tubulin folding c 98.5 3E-08 6.6E-13 85.5 1.5 59 221-279 244-312 (505)
39 PF12799 LRR_4: Leucine Rich r 98.4 3.8E-07 8.2E-12 53.9 4.5 41 245-286 1-41 (44)
40 KOG3665 ZYG-1-like serine/thre 98.4 8.6E-08 1.9E-12 90.3 2.4 127 152-280 122-262 (699)
41 KOG3207 Beta-tubulin folding c 98.4 5.5E-08 1.2E-12 83.9 0.1 150 149-300 143-308 (505)
42 KOG3665 ZYG-1-like serine/thre 98.4 2.3E-07 5.1E-12 87.4 3.8 128 172-299 120-256 (699)
43 KOG1644 U2-associated snRNP A' 98.4 6.5E-07 1.4E-11 69.8 5.4 103 172-278 40-150 (233)
44 PF12799 LRR_4: Leucine Rich r 98.3 7.6E-07 1.7E-11 52.6 3.9 36 201-236 2-37 (44)
45 KOG0531 Protein phosphatase 1, 98.3 8.7E-08 1.9E-12 86.1 -1.5 82 149-234 115-197 (414)
46 KOG4579 Leucine-rich repeat (L 98.2 7.5E-08 1.6E-12 70.5 -2.3 108 154-263 29-141 (177)
47 KOG0531 Protein phosphatase 1, 98.2 2.4E-07 5.1E-12 83.3 0.1 125 151-279 71-197 (414)
48 KOG4579 Leucine-rich repeat (L 98.2 1.5E-07 3.2E-12 69.0 -1.2 111 174-287 27-141 (177)
49 KOG1859 Leucine-rich repeat pr 98.2 2.2E-08 4.8E-13 91.4 -7.3 129 151-285 163-295 (1096)
50 PRK15386 type III secretion pr 98.1 1.1E-05 2.4E-10 70.8 8.7 32 245-278 156-187 (426)
51 KOG1859 Leucine-rich repeat pr 98.0 2E-07 4.3E-12 85.4 -4.6 99 175-279 165-265 (1096)
52 PRK15386 type III secretion pr 98.0 2.6E-05 5.7E-10 68.5 7.4 117 151-286 51-173 (426)
53 KOG1644 U2-associated snRNP A' 97.8 8.1E-05 1.7E-09 58.4 6.7 100 153-254 43-149 (233)
54 KOG1909 Ran GTPase-activating 97.7 2E-05 4.3E-10 66.6 2.5 130 150-279 155-309 (382)
55 KOG2120 SCF ubiquitin ligase, 97.7 3.4E-06 7.5E-11 69.8 -2.7 127 151-279 209-349 (419)
56 KOG1909 Ran GTPase-activating 97.5 6.6E-05 1.4E-09 63.5 2.4 106 172-279 155-281 (382)
57 KOG2739 Leucine-rich acidic nu 97.5 5.1E-05 1.1E-09 61.8 1.6 61 198-258 63-129 (260)
58 KOG2120 SCF ubiquitin ligase, 97.4 5.3E-06 1.2E-10 68.7 -4.5 146 153-300 186-345 (419)
59 KOG2123 Uncharacterized conser 97.4 1.2E-05 2.7E-10 65.9 -2.9 78 173-255 18-98 (388)
60 KOG2982 Uncharacterized conser 97.4 6.2E-05 1.4E-09 62.5 1.1 162 137-299 78-285 (418)
61 KOG2739 Leucine-rich acidic nu 97.2 0.00017 3.6E-09 58.8 1.9 98 199-299 42-149 (260)
62 KOG2982 Uncharacterized conser 97.1 0.00015 3.4E-09 60.2 1.0 124 154-279 47-184 (418)
63 PF00560 LRR_1: Leucine Rich R 96.7 0.00055 1.2E-08 33.7 0.6 19 247-265 2-20 (22)
64 KOG2123 Uncharacterized conser 96.7 7.3E-05 1.6E-09 61.6 -4.3 97 151-251 18-123 (388)
65 PF13306 LRR_5: Leucine rich r 96.6 0.0071 1.5E-07 44.6 6.3 116 172-296 10-129 (129)
66 PF00560 LRR_1: Leucine Rich R 96.5 0.001 2.2E-08 32.7 0.8 21 201-221 1-21 (22)
67 PF13504 LRR_7: Leucine rich r 95.9 0.0053 1.2E-07 28.0 1.5 16 246-261 2-17 (17)
68 COG5238 RNA1 Ran GTPase-activa 95.7 0.021 4.5E-07 47.3 4.9 15 243-257 212-226 (388)
69 PF13504 LRR_7: Leucine rich r 95.3 0.011 2.4E-07 26.9 1.3 16 201-216 2-17 (17)
70 PF13306 LRR_5: Leucine rich r 95.3 0.054 1.2E-06 39.8 5.7 103 191-299 3-109 (129)
71 KOG0473 Leucine-rich repeat pr 95.2 0.00034 7.4E-09 56.2 -6.6 83 172-257 40-123 (326)
72 COG5238 RNA1 Ran GTPase-activa 95.0 0.034 7.3E-07 46.2 4.1 109 171-280 89-226 (388)
73 smart00369 LRR_TYP Leucine-ric 94.2 0.048 1E-06 27.8 2.2 19 245-263 2-20 (26)
74 smart00370 LRR Leucine-rich re 94.2 0.048 1E-06 27.8 2.2 19 245-263 2-20 (26)
75 KOG1947 Leucine rich repeat pr 93.7 0.028 6.1E-07 51.3 1.2 110 172-281 186-308 (482)
76 KOG0473 Leucine-rich repeat pr 93.5 0.0025 5.4E-08 51.4 -5.2 80 153-235 43-123 (326)
77 KOG3864 Uncharacterized conser 93.5 0.019 4.1E-07 45.4 -0.3 79 201-279 102-187 (221)
78 smart00370 LRR Leucine-rich re 93.2 0.091 2E-06 26.7 2.2 22 267-289 1-22 (26)
79 smart00369 LRR_TYP Leucine-ric 93.2 0.091 2E-06 26.7 2.2 22 267-289 1-22 (26)
80 KOG3864 Uncharacterized conser 91.6 0.032 7E-07 44.1 -1.1 79 175-255 102-186 (221)
81 KOG4341 F-box protein containi 90.9 0.15 3.2E-06 45.0 2.0 36 244-279 400-437 (483)
82 smart00364 LRR_BAC Leucine-ric 87.2 0.41 8.9E-06 24.4 1.3 18 245-262 2-19 (26)
83 KOG1947 Leucine rich repeat pr 85.2 0.48 1E-05 43.2 1.7 127 151-277 187-330 (482)
84 KOG4341 F-box protein containi 81.7 0.99 2.1E-05 40.0 2.0 109 172-280 292-413 (483)
85 smart00365 LRR_SD22 Leucine-ri 78.1 1.9 4.1E-05 22.0 1.6 14 245-258 2-15 (26)
86 PF13516 LRR_6: Leucine Rich r 73.5 1.5 3.3E-05 21.5 0.6 11 269-279 3-13 (24)
87 smart00367 LRR_CC Leucine-rich 65.0 6.2 0.00013 19.8 1.8 15 268-282 2-16 (26)
88 smart00368 LRR_RI Leucine rich 59.2 8.6 0.00019 19.7 1.7 13 224-236 3-15 (28)
89 KOG3763 mRNA export factor TAP 45.8 13 0.00027 34.5 1.7 59 199-258 217-283 (585)
90 PF15385 SARG: Specifically an 33.1 24 0.00053 32.5 1.5 16 41-57 7-22 (497)
91 COG3892 Uncharacterized protei 28.1 2.8E+02 0.0062 23.3 6.5 80 8-97 211-297 (310)
92 KOG4308 LRR-containing protein 24.4 4.5 9.8E-05 37.2 -4.8 35 245-279 262-301 (478)
93 PF15641 Tox-MPTase5: Metallop 21.1 1.2E+02 0.0026 20.5 2.6 34 65-98 68-102 (109)
94 TIGR00864 PCC polycystin catio 20.5 81 0.0018 35.6 2.7 27 160-186 3-31 (2740)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-44 Score=340.60 Aligned_cols=275 Identities=28% Similarity=0.454 Sum_probs=240.9
Q ss_pred CcccCCC-ChhHHHHHHHHhcCCCCCCCCCCCcccccceeeccccCCchhHHHHHHHhhhcCCCCCHH--HHHhhhhhcc
Q 037969 1 ARALRNK-SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWFT--DLFKYSMGLG 77 (300)
Q Consensus 1 g~~L~~k-~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~a~fp~~~~~~--~Li~~w~aeg 77 (300)
|+.|+.| +.++|+++.+.+......+.+++++.|.++|++|||+||++ +|.||+|||.||+||.|. +|+..|||||
T Consensus 363 G~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEG 441 (889)
T KOG4658|consen 363 GGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEG 441 (889)
T ss_pred HHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhcc
Confidence 6789999 99999999999988766666777888999999999999977 999999999999999999 9999999999
Q ss_pred cccCchhHHHHHHHHHHHHHHHHHhcccccCC---CCCcEEechhHHHHHHHHhh-----cCCcEEEEeccccccCCCcc
Q 037969 78 IFQGVNRMVDARNKLYALVHELRDSCLLLEGD---SSEQFSMHDVVYDVVVSIAC-----RDQHVFLVRNEVVWEWPDED 149 (300)
Q Consensus 78 ~i~~~~~~e~~~~~~~~~~~~L~~~~~~~~~~---~~~~~~~hdl~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 149 (300)
|+++....+.+++.+++++.+|++++++.... ...+|+|||+++++|..++. +++ .....+.+..+.|...
T Consensus 442 fi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~~~ 520 (889)
T KOG4658|consen 442 FIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQVK 520 (889)
T ss_pred CcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc-eEEECCcCcccccccc
Confidence 99985556668999999999999999998765 44779999999999999998 566 3333334555567667
Q ss_pred ccCCccEEEeecCCCcccCccccCCCccEEecccCc--cccccCchhHHhcCCcccEEEeeCC-cCCcCCcccccCCCCc
Q 037969 150 ALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNT--FVEVNIPDNIFKGMKTLRVIDLTRM-RLFSLPSSIGLLANLQ 226 (300)
Q Consensus 150 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~l~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~ 226 (300)
.....|++++.++.+..++....+++|++|-+.+|. + ..++..+|..++.|++|||++| .+.++|+.|+.|.+||
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l--~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWL--LEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchhhccCCCCCCccceEEEeecchhh--hhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 778899999999999888888888899999999986 5 7788888899999999999976 5678999999999999
Q ss_pred EEEccCCCCCC-cccccCCCCcCEEEccCC-CCCCCchhhcCCCCCCEEeccCCC
Q 037969 227 TLCLDQSMLGD-IAIIGKLKNLEILSFLNS-DIVRLPGELGQLTKLRLLDLTDCL 279 (300)
Q Consensus 227 ~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~ 279 (300)
||+++++.++. |.++++|+.|.+|++..+ .+..+|.....|++|++|.+....
T Consensus 599 yL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 599 YLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 99999999999 999999999999999998 556667667779999999997764
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.95 E-value=9.2e-28 Score=237.79 Aligned_cols=272 Identities=19% Similarity=0.268 Sum_probs=199.3
Q ss_pred CcccCCCChhHHHHHHHHhcCCCCCCCCCCCcccccceeeccccCCchhHHHHHHHhhhcCCCCCHHHHHhhhhhccccc
Q 037969 1 ARALRNKSLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWFTDLFKYSMGLGIFQ 80 (300)
Q Consensus 1 g~~L~~k~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~a~fp~~~~~~~Li~~w~aeg~i~ 80 (300)
|+.|++|+..+|+.++++++... +.+|.++|++||++|++++.|.||+||||||.+..++. +..|+|.+...
T Consensus 396 gs~L~~k~~~~W~~~l~~L~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~-v~~~l~~~~~~ 467 (1153)
T PLN03210 396 GSYLRGRDKEDWMDMLPRLRNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND-IKLLLANSDLD 467 (1153)
T ss_pred HHHHcCCCHHHHHHHHHHHHhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH-HHHHHHhcCCC
Confidence 67899999999999999987532 34599999999999986437999999999999987763 55677766543
Q ss_pred CchhHHHHHHHHHHHHHHHHHhcccccCCCCCcEEechhHHHHHHHHhhcCC------cEEEEeccc-------------
Q 037969 81 GVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDVVVSIACRDQ------HVFLVRNEV------------- 141 (300)
Q Consensus 81 ~~~~~e~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~hdl~~~~~~~~~~~~~------~~~~~~~~~------------- 141 (300)
.. ..++.|+++++++.. .++++|||+++++|+.+++++. .+. .....
T Consensus 468 ~~-----------~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l-~~~~di~~vl~~~~g~~~ 533 (1153)
T PLN03210 468 VN-----------IGLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFL-VDAKDICDVLEDNTGTKK 533 (1153)
T ss_pred ch-----------hChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeE-eCHHHHHHHHHhCcccce
Confidence 21 127788999999765 3579999999999999986542 111 11000
Q ss_pred ----------ccc--CC--CccccCCccEEEeecCCC-------cccCccc-cC-CCccEEecccCccccccCchhHHhc
Q 037969 142 ----------VWE--WP--DEDALKKCSAISLLNSSI-------HEVSEEF-EC-LQLEFLHISQNTFVEVNIPDNIFKG 198 (300)
Q Consensus 142 ----------~~~--~~--~~~~~~~l~~L~l~~~~~-------~~~~~~~-~~-~~L~~L~l~~~~~~~~~l~~~~~~~ 198 (300)
... +. ....+.+++.|.+..+.. ..+|..+ .+ ++|+.|.+.++.. ..+|..+ .
T Consensus 534 v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l--~~lP~~f--~ 609 (1153)
T PLN03210 534 VLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL--RCMPSNF--R 609 (1153)
T ss_pred eeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC--CCCCCcC--C
Confidence 000 00 113456677776654432 1244433 33 4688888888887 7888765 4
Q ss_pred CCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCC-CCCcccccCCCCcCEEEccCC-CCCCCchhhcCCCCCCEEecc
Q 037969 199 MKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSM-LGDIAIIGKLKNLEILSFLNS-DIVRLPGELGQLTKLRLLDLT 276 (300)
Q Consensus 199 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~-l~~p~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~ 276 (300)
+.+|+.|++.++.+..+|..+..+++|++|+++++. +..++.++.+++|++|++++| .+..+|.+++++++|+.|+++
T Consensus 610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~ 689 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS 689 (1153)
T ss_pred ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCC
Confidence 688888888888888888888888889999988775 444556788888999999888 677888888888899999998
Q ss_pred CCCCccccchhhhcCCCCCCeeeC
Q 037969 277 DCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 277 ~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
+|..++.+|.. + ++++|+.|++
T Consensus 690 ~c~~L~~Lp~~-i-~l~sL~~L~L 711 (1153)
T PLN03210 690 RCENLEILPTG-I-NLKSLYRLNL 711 (1153)
T ss_pred CCCCcCccCCc-C-CCCCCCEEeC
Confidence 88888888875 3 6777777754
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.77 E-value=6.1e-21 Score=143.31 Aligned_cols=140 Identities=30% Similarity=0.480 Sum_probs=104.4
Q ss_pred cccCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc--CCcccccCCCC
Q 037969 149 DALKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS--LPSSIGLLANL 225 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L 225 (300)
..+.+++.|.+.+|+++++|..+ .+++|+.|++.-|.+ ..+|.++ +.++.|.+||+.+|++.+ +|..+..+..|
T Consensus 53 a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl--~~lprgf-gs~p~levldltynnl~e~~lpgnff~m~tl 129 (264)
T KOG0617|consen 53 AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRL--NILPRGF-GSFPALEVLDLTYNNLNENSLPGNFFYMTTL 129 (264)
T ss_pred HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhh--hcCcccc-CCCchhhhhhccccccccccCCcchhHHHHH
Confidence 55666677777777776666655 677777777776666 6666665 667777777777776664 67666667777
Q ss_pred cEEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCC
Q 037969 226 QTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFT 293 (300)
Q Consensus 226 ~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~ 293 (300)
+.|.+++|.++. |+.++++++||.|.++.|++-++|..++.++.|+.|++.+|+ +..+|++ ++++.
T Consensus 130 ralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr-l~vlppe-l~~l~ 196 (264)
T KOG0617|consen 130 RALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR-LTVLPPE-LANLD 196 (264)
T ss_pred HHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce-eeecChh-hhhhh
Confidence 777777777776 788888888888888888888888888888888888888888 8888887 66543
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=2e-20 Score=140.53 Aligned_cols=153 Identities=27% Similarity=0.393 Sum_probs=140.0
Q ss_pred ccCCCccccCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCccccc
Q 037969 143 WEWPDEDALKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGL 221 (300)
Q Consensus 143 ~~~~~~~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~ 221 (300)
..++..-.++++++|.+++|++..+|+.+ .+.+|++|++.+|++ .++|.++ +.++.|+.|+++.|++..+|..+|.
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqi--e~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQI--EELPTSI-SSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchh--hhcChhh-hhchhhhheecchhhhhcCccccCC
Confidence 34455556778899999999998888777 999999999999999 9999998 8999999999999999999999999
Q ss_pred CCCCcEEEccCCCCCC---cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCee
Q 037969 222 LANLQTLCLDQSMLGD---IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL 298 (300)
Q Consensus 222 l~~L~~L~l~~~~l~~---p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L 298 (300)
++-|+.||+++|.+.. |..+.-++.|+.|.+++|.++-+|+.++++++|+.|.+.+|. +-++|++ ++.|+.|++|
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrel 178 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLREL 178 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHH
Confidence 9999999999999876 788889999999999999999999999999999999999998 8899998 9999999887
Q ss_pred eC
Q 037969 299 YM 300 (300)
Q Consensus 299 ~l 300 (300)
++
T Consensus 179 hi 180 (264)
T KOG0617|consen 179 HI 180 (264)
T ss_pred hc
Confidence 64
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.60 E-value=7e-15 Score=145.40 Aligned_cols=145 Identities=23% Similarity=0.395 Sum_probs=62.3
Q ss_pred cCCccEEEeecCCC-cccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcccccCCCCcE
Q 037969 151 LKKCSAISLLNSSI-HEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQT 227 (300)
Q Consensus 151 ~~~l~~L~l~~~~~-~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~ 227 (300)
+++++.|++++|.+ ..+|..+ .+++|++|++++|.+ .+.+|..+ +++++|++|++++|.+.. +|..++++++|++
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l-~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL-VGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc-cccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 34444444444444 2333333 444555555554443 12333332 444444444444444443 3444444444444
Q ss_pred EEccCCCCCC--cccccCCCCcCEEEccCCCCC-CCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCee
Q 037969 228 LCLDQSMLGD--IAIIGKLKNLEILSFLNSDIV-RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL 298 (300)
Q Consensus 228 L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L 298 (300)
|++++|.+.. |..++.+++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. +..+++|++|
T Consensus 217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L 289 (968)
T PLN00113 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISL 289 (968)
T ss_pred EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEE
Confidence 4444444432 344444444444444444333 34444444444444444444422333332 3344444433
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.60 E-value=6.2e-15 Score=145.78 Aligned_cols=147 Identities=26% Similarity=0.368 Sum_probs=116.1
Q ss_pred ccCCccEEEeecCCCc-ccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcccccCCCCcE
Q 037969 150 ALKKCSAISLLNSSIH-EVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQT 227 (300)
Q Consensus 150 ~~~~l~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~ 227 (300)
.++++++|++++|.+. .+|. ..+++|++|++++|.+ .+.+|..+ +.+++|++|++++|.+.. +|..++++++|++
T Consensus 116 ~l~~L~~L~Ls~n~l~~~~p~-~~l~~L~~L~Ls~n~~-~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 116 TSSSLRYLNLSNNNFTGSIPR-GSIPNLETLDLSNNML-SGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred cCCCCCEEECcCCccccccCc-cccCCCCEEECcCCcc-cccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 5667778888777763 3332 3577888888888877 24566665 788889999998888764 7888888889999
Q ss_pred EEccCCCCCC--cccccCCCCcCEEEccCCCCC-CCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 228 LCLDQSMLGD--IAIIGKLKNLEILSFLNSDIV-RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 228 L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
|++++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L 267 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFL 267 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEEC
Confidence 9998888765 788888899999999888776 78888888999999999988855677776 888888888864
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.55 E-value=1e-16 Score=142.36 Aligned_cols=154 Identities=23% Similarity=0.300 Sum_probs=138.7
Q ss_pred cccCCCc-cccCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCccc
Q 037969 142 VWEWPDE-DALKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI 219 (300)
Q Consensus 142 ~~~~~~~-~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i 219 (300)
+.++|.. ..+.+++.++++.|.+..+|+.. ++++|+.|++++|.+ .++.-.+ ..+.+|.+|+++.|+++.+|+.+
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i--teL~~~~-~~W~~lEtLNlSrNQLt~LP~av 287 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI--TELNMTE-GEWENLETLNLSRNQLTVLPDAV 287 (1255)
T ss_pred hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce--eeeeccH-HHHhhhhhhccccchhccchHHH
Confidence 4455654 77889999999999999999887 999999999999999 7777666 77899999999999999999999
Q ss_pred ccCCCCcEEEccCCCCC--C-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCC
Q 037969 220 GLLANLQTLCLDQSMLG--D-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLE 296 (300)
Q Consensus 220 ~~l~~L~~L~l~~~~l~--~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~ 296 (300)
++|+.|+.|.+.+|.+. . |++||++.+|+.+...+|.++-.|.+++.+.+|+.|.++.|+ +-.+|.. |.-|+.|+
T Consensus 288 cKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~Nr-LiTLPea-IHlL~~l~ 365 (1255)
T KOG0444|consen 288 CKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNR-LITLPEA-IHLLPDLK 365 (1255)
T ss_pred hhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccc-eeechhh-hhhcCCcc
Confidence 99999999999999855 4 899999999999999999999999999999999999999998 8889987 88899999
Q ss_pred eeeC
Q 037969 297 ELYM 300 (300)
Q Consensus 297 ~L~l 300 (300)
.|++
T Consensus 366 vLDl 369 (1255)
T KOG0444|consen 366 VLDL 369 (1255)
T ss_pred eeec
Confidence 8875
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.53 E-value=1.2e-15 Score=135.73 Aligned_cols=147 Identities=27% Similarity=0.398 Sum_probs=111.1
Q ss_pred cccCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcE
Q 037969 149 DALKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQT 227 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 227 (300)
-.+..++.|++++|++.++|... ..+++-+|++++|++ ..+|..+|-++.-|-+|||++|++..+|+.+..|.+|++
T Consensus 100 F~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I--etIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI--ETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred cccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcc--ccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhh
Confidence 56788999999999999999877 788999999999999 999999999999999999999999999999999999999
Q ss_pred EEccCCCCCC--cccccCCCCcCEEEccCCC--CCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969 228 LCLDQSMLGD--IAIIGKLKNLEILSFLNSD--IVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299 (300)
Q Consensus 228 L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~--l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 299 (300)
|+|++|.+.- ...+..+++|++|.+++++ +..+|.++-.|.+|+.++++.|. +..+|.- +-++++|+.|+
T Consensus 178 L~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPec-ly~l~~LrrLN 251 (1255)
T KOG0444|consen 178 LKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPEC-LYKLRNLRRLN 251 (1255)
T ss_pred hhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHH-Hhhhhhhheec
Confidence 9999996543 3444455555555555552 22555555555555555555555 5555544 45555555554
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.39 E-value=3.8e-14 Score=125.17 Aligned_cols=147 Identities=20% Similarity=0.275 Sum_probs=109.0
Q ss_pred cCCccEEEeecCCCcccCc--cccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcE
Q 037969 151 LKKCSAISLLNSSIHEVSE--EFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQT 227 (300)
Q Consensus 151 ~~~l~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~ 227 (300)
+++++.|++..|.+..+.. +-+++.|+.|.+..|.+ ..+.++.|-.+.++++|+|+.|+++.+ -.++.+|+.|+.
T Consensus 220 L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I--~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~ 297 (873)
T KOG4194|consen 220 LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI--SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQ 297 (873)
T ss_pred cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc--ccccCcceeeecccceeecccchhhhhhcccccccchhhh
Confidence 4555555555555543321 12556666666666666 666666666777788888888888776 345778888999
Q ss_pred EEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 228 LCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 228 L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
|++++|.+.. +.++...++|++|+|+.|+++++|++ +..|..|+.|.+++|+ +..+.++.+..+++|++|+|
T Consensus 298 L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdL 372 (873)
T KOG4194|consen 298 LDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDL 372 (873)
T ss_pred hccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcC
Confidence 9999998887 78888889999999999999888764 6777888888888888 78888777888888888875
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.39 E-value=5.3e-14 Score=119.13 Aligned_cols=126 Identities=27% Similarity=0.443 Sum_probs=102.7
Q ss_pred EEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCC
Q 037969 157 ISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSML 235 (300)
Q Consensus 157 L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l 235 (300)
+.++.+.++-+|... .+++|..|++++|.+ ..+|... +.+..||.|+++.|++..+|+.+..+..++++-.+++++
T Consensus 417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN~L--n~LP~e~-~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi 493 (565)
T KOG0472|consen 417 LVLSNNKISFVPLELSQLQKLTFLDLSNNLL--NDLPEEM-GSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQI 493 (565)
T ss_pred HHhhcCccccchHHHHhhhcceeeecccchh--hhcchhh-hhhhhhheecccccccccchHHHhhHHHHHHHHhccccc
Confidence 344445555555544 788888899988888 8888876 678889999999998888888888888888888888888
Q ss_pred CC--cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchh
Q 037969 236 GD--IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPN 287 (300)
Q Consensus 236 ~~--p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~ 287 (300)
.. +..++.+.+|.+|++..|.+..+|+.+|+|++|++|++++|+ +. .|++
T Consensus 494 ~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNp-fr-~Pr~ 545 (565)
T KOG0472|consen 494 GSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNP-FR-QPRH 545 (565)
T ss_pred cccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCc-cC-CCHH
Confidence 87 466899999999999999999999999999999999999998 44 6665
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.36 E-value=5.4e-14 Score=119.09 Aligned_cols=141 Identities=27% Similarity=0.348 Sum_probs=108.1
Q ss_pred cEEEeecCCCcccCccc-cCCCccE-EecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccC
Q 037969 155 SAISLLNSSIHEVSEEF-ECLQLEF-LHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQ 232 (300)
Q Consensus 155 ~~L~l~~~~~~~~~~~~-~~~~L~~-L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 232 (300)
+..+++.|++.++|+.. .+..+.+ +.++.|.+ ..+|. +.+.+++|..|++++|-+..+|..++.+..||.|+++.
T Consensus 391 t~VnfskNqL~elPk~L~~lkelvT~l~lsnn~i--sfv~~-~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~ 467 (565)
T KOG0472|consen 391 TSVNFSKNQLCELPKRLVELKELVTDLVLSNNKI--SFVPL-ELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSF 467 (565)
T ss_pred EEEecccchHhhhhhhhHHHHHHHHHHHhhcCcc--ccchH-HHHhhhcceeeecccchhhhcchhhhhhhhhheecccc
Confidence 34444444444444432 2222222 23333333 33333 34889999999999999999999999999999999999
Q ss_pred CCCCC-cccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 233 SMLGD-IAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 233 ~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
|++.. |..+..+..|+++..+.+.+.++|.+ +++|.+|.+|++.+|. +..+|+. +|+|++|++|.+
T Consensus 468 NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~-LgnmtnL~hLeL 535 (565)
T KOG0472|consen 468 NRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPI-LGNMTNLRHLEL 535 (565)
T ss_pred cccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc-hhhCChh-hccccceeEEEe
Confidence 99988 88888888888888888899988777 9999999999999988 9999998 999999999875
No 12
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.33 E-value=1.6e-12 Score=101.18 Aligned_cols=123 Identities=24% Similarity=0.371 Sum_probs=53.1
Q ss_pred cCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCccc-ccCCCCcEE
Q 037969 151 LKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQTL 228 (300)
Q Consensus 151 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L 228 (300)
..+++.|+++++.+..+.... .+.+|+.|++++|.+ ..++. +..++.|++|++++|+++++++.+ ..+++|+.|
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I--~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQI--TKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS----S--TT------TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccchhhhhcCCCEEECCCCCC--ccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 345788999999887776655 678899999999988 77765 477889999999999998886655 368889999
Q ss_pred EccCCCCCC---cccccCCCCcCEEEccCCCCCCCch----hhcCCCCCCEEeccC
Q 037969 229 CLDQSMLGD---IAIIGKLKNLEILSFLNSDIVRLPG----ELGQLTKLRLLDLTD 277 (300)
Q Consensus 229 ~l~~~~l~~---p~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~ 277 (300)
++++|.+.. ...+..+++|+.|++.+|.++..+. -+..+++|+.||-..
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 999998776 4677788899999999988875554 267788888888543
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.30 E-value=2.6e-12 Score=113.76 Aligned_cols=148 Identities=21% Similarity=0.306 Sum_probs=93.1
Q ss_pred cccCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc-ccccCCCCc
Q 037969 149 DALKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANLQ 226 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~ 226 (300)
..+++++.+.+..|.+..+|... ...+++.|++.+|.+ ..+...-++.++.||+|||+.|.++++|. ++..=.+++
T Consensus 99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I--~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~ 176 (873)
T KOG4194|consen 99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLI--SSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIK 176 (873)
T ss_pred hcCCcceeeeeccchhhhcccccccccceeEEeeecccc--ccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCce
Confidence 45566666777666666666665 444577777777766 55555445666777777777777776653 344445677
Q ss_pred EEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969 227 TLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299 (300)
Q Consensus 227 ~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 299 (300)
+|+|++|.+.. -..+..+.+|.+|.|+.|.++.+|.- +.+|++|+.|++..|+ ++.+.--.+..|++|+.|.
T Consensus 177 ~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 177 KLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred EEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhh
Confidence 77777777665 35566666777777777777777654 4447777777777666 4444322355555555543
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.28 E-value=4.9e-12 Score=98.48 Aligned_cols=134 Identities=24% Similarity=0.271 Sum_probs=52.8
Q ss_pred cCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC-cc
Q 037969 161 NSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD-IA 239 (300)
Q Consensus 161 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-p~ 239 (300)
.+.+...+...+..+++.|++.+|.+ ..+.. +...+.+|++|++++|.++.++ .+..+++|++|++++|.++. .+
T Consensus 6 ~~~i~~~~~~~n~~~~~~L~L~~n~I--~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~ 81 (175)
T PF14580_consen 6 ANMIEQIAQYNNPVKLRELNLRGNQI--STIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISE 81 (175)
T ss_dssp --------------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CH
T ss_pred cccccccccccccccccccccccccc--ccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcccc
Confidence 34455666666777899999999999 66653 3225789999999999999985 57889999999999999998 44
Q ss_pred cc-cCCCCcCEEEccCCCCCCCc--hhhcCCCCCCEEeccCCCCccccc---hhhhcCCCCCCeee
Q 037969 240 II-GKLKNLEILSFLNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFIV---PNVLSSFTRLEELY 299 (300)
Q Consensus 240 ~~-~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp---~~~l~~L~~L~~L~ 299 (300)
.+ ..+++|++|++++|++..+- ..+..+++|+.|++.+|+ +...+ .-++..+++|+.||
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEET
T ss_pred chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeC
Confidence 45 46899999999999887442 357889999999999998 44333 23588899999886
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.26 E-value=3.7e-11 Score=120.21 Aligned_cols=131 Identities=24% Similarity=0.330 Sum_probs=107.7
Q ss_pred cCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCc-CCcCCcccccCCCCcEEE
Q 037969 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMR-LFSLPSSIGLLANLQTLC 229 (300)
Q Consensus 151 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~ 229 (300)
..++|.|.+.++.+..+|..+...+|+.|++.++.+ ..++..+ ..+++|++|+++++. +..+|. ++.+++|++|+
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l--~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~ 663 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKL--EKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLK 663 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCCccCCcEEECcCccc--ccccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCcccEEE
Confidence 356889999998888899888888999999999888 7888776 788999999998764 555664 78889999999
Q ss_pred ccCCC-CCC-cccccCCCCcCEEEccCC-CCCCCchhhcCCCCCCEEeccCCCCccccch
Q 037969 230 LDQSM-LGD-IAIIGKLKNLEILSFLNS-DIVRLPGELGQLTKLRLLDLTDCLQLKFIVP 286 (300)
Q Consensus 230 l~~~~-l~~-p~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 286 (300)
+++|. +.. |..++.+++|+.|++++| .++.+|..+ ++++|++|++++|..++.+|.
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc
Confidence 98876 445 888889999999999988 788888766 788888888888877776664
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.22 E-value=1e-10 Score=110.72 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=17.3
Q ss_pred cccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC
Q 037969 201 TLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD 237 (300)
Q Consensus 201 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~ 237 (300)
+|+.|++++|+++.+|..+. .+|++|++++|.+..
T Consensus 263 ~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~ 297 (754)
T PRK15370 263 ALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRT 297 (754)
T ss_pred CCCEEECcCCccCccccccC--CCCcEEECCCCcccc
Confidence 44555555555555444332 245555555555443
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.22 E-value=5.1e-11 Score=112.74 Aligned_cols=119 Identities=20% Similarity=0.285 Sum_probs=94.6
Q ss_pred EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969 135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 214 (300)
..+.+..+..+|.. ..++++.|++++|.+..+|... +++|+.|++.+|.+ ..+|..+ ..+|+.|++++|.++.
T Consensus 183 L~L~~~~LtsLP~~-Ip~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~L--tsLP~~l---~~~L~~L~Ls~N~L~~ 255 (754)
T PRK15370 183 LRLKILGLTTIPAC-IPEQITTLILDNNELKSLPENL-QGNIKTLYANSNQL--TSIPATL---PDTIQEMELSINRITE 255 (754)
T ss_pred EEeCCCCcCcCCcc-cccCCcEEEecCCCCCcCChhh-ccCCCEEECCCCcc--ccCChhh---hccccEEECcCCccCc
Confidence 34445556666652 3567999999999998888755 36899999999999 7888765 3579999999999999
Q ss_pred CCcccccCCCCcEEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhh
Q 037969 215 LPSSIGLLANLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGEL 264 (300)
Q Consensus 215 lp~~i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~ 264 (300)
+|..+. .+|++|++++|.+.. |..+. ++|+.|++++|+++.+|..+
T Consensus 256 LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l 302 (754)
T PRK15370 256 LPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHL 302 (754)
T ss_pred CChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccc
Confidence 998765 589999999999888 66554 58999999999988877643
No 18
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.21 E-value=1.2e-12 Score=107.22 Aligned_cols=132 Identities=25% Similarity=0.280 Sum_probs=111.9
Q ss_pred cccCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcE
Q 037969 149 DALKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQT 227 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 227 (300)
..++.++.+++++|.++.+..+. -.|++|.|++++|.+ ..+.. +..+++|+.|||++|.++++-..-.++-|.++
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i--~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRI--RTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccce--eeehh--hhhcccceEeecccchhHhhhhhHhhhcCEee
Confidence 34566788999999998888877 678999999999998 66655 47889999999999998887555567888999
Q ss_pred EEccCCCCCCcccccCCCCcCEEEccCCCCCCCc--hhhcCCCCCCEEeccCCCCccccc
Q 037969 228 LCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFIV 285 (300)
Q Consensus 228 L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp 285 (300)
|.+.+|.+...++++++.+|..|++++|+++.+. .+||+|++|+++.+.+|+ +..+|
T Consensus 357 L~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP-l~~~v 415 (490)
T KOG1259|consen 357 LKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP-LAGSV 415 (490)
T ss_pred eehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC-ccccc
Confidence 9999999988899999999999999999998653 469999999999999998 55554
No 19
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=8.3e-13 Score=116.42 Aligned_cols=140 Identities=26% Similarity=0.404 Sum_probs=78.6
Q ss_pred CccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEcc
Q 037969 153 KCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLD 231 (300)
Q Consensus 153 ~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 231 (300)
.+..+.+..|.+..+|..+ ++..|..++++.|++ ..+|..+ + .--|++|.+++|+++.+|+.++.+..|..||.+
T Consensus 99 ~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql--S~lp~~l-C-~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 99 SLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL--SHLPDGL-C-DLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred HHHHHHHHhccceecchhhhhhhHHHHhhhccchh--hcCChhh-h-cCcceeEEEecCccccCCcccccchhHHHhhhh
Confidence 3444455555555555444 555566666666655 5555554 2 233566666666666666666655556666666
Q ss_pred CCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969 232 QSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299 (300)
Q Consensus 232 ~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 299 (300)
.|.+.. |+.++.+.+|+.|.++.|.+..+|..++.| .|..||++.|+ +..+|-. |.+|+.||+|.
T Consensus 175 ~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNk-is~iPv~-fr~m~~Lq~l~ 240 (722)
T KOG0532|consen 175 KNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNK-ISYLPVD-FRKMRHLQVLQ 240 (722)
T ss_pred hhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCc-eeecchh-hhhhhhheeee
Confidence 665555 555555666666666655555555555532 45555655555 5555555 55555555553
No 20
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.13 E-value=2.5e-10 Score=107.77 Aligned_cols=69 Identities=16% Similarity=0.146 Sum_probs=36.0
Q ss_pred CCcEEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 224 NLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 224 ~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
+|+.|++++|.+.. |.. .++|+.|++++|.++.+|.. ..+|+.|++++|. ++.+|.. ++++++|+.|+|
T Consensus 383 ~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~s-l~~L~~L~~LdL 452 (788)
T PRK15387 383 GLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQ-LTRLPES-LIHLSSETTVNL 452 (788)
T ss_pred ccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCc-ccccChH-HhhccCCCeEEC
Confidence 34555555555544 321 23455555555555555532 2245556666655 5566655 666666666653
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.12 E-value=4.4e-12 Score=117.55 Aligned_cols=81 Identities=32% Similarity=0.470 Sum_probs=42.3
Q ss_pred cCCcccEEEeeCCcCCcCCcc-cccCCCCcEEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEec
Q 037969 198 GMKTLRVIDLTRMRLFSLPSS-IGLLANLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDL 275 (300)
Q Consensus 198 ~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l 275 (300)
++++|++|+|++|++..+|++ +.++..|+.|+++||.++. |.++.+++.|++|...+|.+..+| .+.+++.|+.+|+
T Consensus 381 ~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDl 459 (1081)
T KOG0618|consen 381 NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDL 459 (1081)
T ss_pred cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEec
Confidence 344555555555555555432 4445555555555555555 555555555555555555555555 4555555555555
Q ss_pred cCCC
Q 037969 276 TDCL 279 (300)
Q Consensus 276 ~~~~ 279 (300)
+.|.
T Consensus 460 S~N~ 463 (1081)
T KOG0618|consen 460 SCNN 463 (1081)
T ss_pred ccch
Confidence 5544
No 22
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.10 E-value=3.1e-12 Score=109.23 Aligned_cols=80 Identities=28% Similarity=0.455 Sum_probs=63.0
Q ss_pred CcccCCC-ChhHHHHHHHHhcCCCCCCCCCCCcccccceeeccccCCchhHHHHHHHhhhcCCCCCHH--HHHhhhhhcc
Q 037969 1 ARALRNK-SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWFT--DLFKYSMGLG 77 (300)
Q Consensus 1 g~~L~~k-~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~a~fp~~~~~~--~Li~~w~aeg 77 (300)
|++|+.+ +..+|+++++++....... .+....+..++.+||+.||++ +|.||+|||+||+++.|+ .|+++|+|+|
T Consensus 203 a~~l~~~~~~~~w~~~~~~l~~~~~~~-~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~ 280 (287)
T PF00931_consen 203 ASYLRSKSTVDEWEEALEELENSLRES-RDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEG 280 (287)
T ss_dssp HHHHHHHHSSSSHHHHHHHHHHCHTCS-SGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-H
T ss_pred ccccccccccccccccccccccccccc-ccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCC
Confidence 3456555 7899999998877644321 223556999999999999998 999999999999999988 9999999999
Q ss_pred cccCc
Q 037969 78 IFQGV 82 (300)
Q Consensus 78 ~i~~~ 82 (300)
+|+..
T Consensus 281 ~i~~~ 285 (287)
T PF00931_consen 281 FISSK 285 (287)
T ss_dssp HTC--
T ss_pred CCccc
Confidence 99763
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.08 E-value=7.4e-11 Score=100.06 Aligned_cols=61 Identities=26% Similarity=0.389 Sum_probs=36.4
Q ss_pred ccccCCCCcCEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 239 AIIGKLKNLEILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 239 ~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
..+.++++|+.|++++|.++.+-+ ++..+..++.|++..|+ +..+..+++..+..|++|+|
T Consensus 268 ~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L 329 (498)
T KOG4237|consen 268 KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSL 329 (498)
T ss_pred HHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeee
Confidence 335577777777777777765533 35555566666666665 55555555555555555543
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.07 E-value=1.2e-11 Score=114.81 Aligned_cols=129 Identities=22% Similarity=0.360 Sum_probs=111.2
Q ss_pred cccCCccEEEeecCCC--cccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCc
Q 037969 149 DALKKCSAISLLNSSI--HEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQ 226 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 226 (300)
.....+..|.+.+|.+ ..+|...++.+|++|.+.+|.+ ..+|++.+.++..|+.|+|+||+++.+|..+.++..|+
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL--~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL--NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLH 433 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc--ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhH
Confidence 3455577788888888 4577777999999999999999 99999999999999999999999999999999999999
Q ss_pred EEEccCCCCCCcccccCCCCcCEEEccCCCCC--CCchhhcCCCCCCEEeccCCCC
Q 037969 227 TLCLDQSMLGDIAIIGKLKNLEILSFLNSDIV--RLPGELGQLTKLRLLDLTDCLQ 280 (300)
Q Consensus 227 ~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~ 280 (300)
+|...+|.+...+.+.+++.|+.+|++.|+++ .+|...-. ++|++|++++|..
T Consensus 434 tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 434 TLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred HHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 99999999888338999999999999999887 44443322 7999999999984
No 25
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.03 E-value=2.5e-09 Score=101.08 Aligned_cols=94 Identities=18% Similarity=0.144 Sum_probs=48.5
Q ss_pred EEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhH----------------HhcC
Q 037969 136 LVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNI----------------FKGM 199 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~----------------~~~l 199 (300)
.+....+..+|. ....+++.|.+..|.+..+|.. .++|++|++++|.+ ..+|... ...+
T Consensus 207 dLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~L--tsLP~lp~sL~~L~Ls~N~L~~Lp~lp 281 (788)
T PRK15387 207 NVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQL--TSLPVLPPGLLELSIFSNPLTHLPALP 281 (788)
T ss_pred EcCCCCCCcCCc-chhcCCCEEEccCCcCCCCCCC--CCCCcEEEecCCcc--CcccCcccccceeeccCCchhhhhhch
Confidence 344444555554 2223556666666666555542 35566666666655 4444311 0011
Q ss_pred CcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC
Q 037969 200 KTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD 237 (300)
Q Consensus 200 ~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~ 237 (300)
..|+.|++++|.++.+|.. +++|++|++++|.+..
T Consensus 282 ~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 282 SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS 316 (788)
T ss_pred hhcCEEECcCCcccccccc---ccccceeECCCCcccc
Confidence 3445555555555555542 3567777777776655
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=3.2e-11 Score=106.60 Aligned_cols=134 Identities=25% Similarity=0.377 Sum_probs=122.4
Q ss_pred cccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEE
Q 037969 149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTL 228 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 228 (300)
..+..++.++++.|++..+|..+..--|+.|.+++|.+ +.+|+.+ +....|..|+.+.|.+..+|+.++.+..|+.|
T Consensus 118 ~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNkl--~~lp~~i-g~~~tl~~ld~s~nei~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNKL--TSLPEEI-GLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDL 194 (722)
T ss_pred hhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCcc--ccCCccc-ccchhHHHhhhhhhhhhhchHHhhhHHHHHHH
Confidence 56677889999999999999888777899999999999 9999998 68899999999999999999999999999999
Q ss_pred EccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchh
Q 037969 229 CLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPN 287 (300)
Q Consensus 229 ~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~ 287 (300)
.++.|.+.. |+.++.|+ |..||++.|++..+|-+|.+|+.|++|-|.+|+ +.+=|..
T Consensus 195 ~vrRn~l~~lp~El~~Lp-Li~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAq 252 (722)
T KOG0532|consen 195 NVRRNHLEDLPEELCSLP-LIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQ 252 (722)
T ss_pred HHhhhhhhhCCHHHhCCc-eeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHH
Confidence 999999888 88888777 999999999999999999999999999999998 7776654
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.00 E-value=3.9e-10 Score=100.70 Aligned_cols=159 Identities=26% Similarity=0.402 Sum_probs=114.2
Q ss_pred EEeccccccCCCccccC--CccEEEeecCCCcccCcc-ccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcC
Q 037969 136 LVRNEVVWEWPDEDALK--KCSAISLLNSSIHEVSEE-FECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRL 212 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~--~l~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 212 (300)
......+..++...... +++.|++.++.+..+|.. ..+++|+.|++.+|++ ..+|... ...+.|+.|++++|.+
T Consensus 122 ~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l--~~l~~~~-~~~~~L~~L~ls~N~i 198 (394)
T COG4886 122 DLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL--SDLPKLL-SNLSNLNNLDLSGNKI 198 (394)
T ss_pred ecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh--hhhhhhh-hhhhhhhheeccCCcc
Confidence 34444455555543332 788888888888777633 4788888888888888 7777644 3678888888888888
Q ss_pred CcCCcccccCCCCcEEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcC
Q 037969 213 FSLPSSIGLLANLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSS 291 (300)
Q Consensus 213 ~~lp~~i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~ 291 (300)
+.+|..++.+..|+++.+++|.... +..+.++.++..+.+.++.+..+|..++.+++++.|++++|. +..++. ++.
T Consensus 199 ~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~-i~~i~~--~~~ 275 (394)
T COG4886 199 SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ-ISSISS--LGS 275 (394)
T ss_pred ccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccc-cccccc--ccc
Confidence 8888777667778888888885333 677777777777777777777667777788888888888877 666665 677
Q ss_pred CCCCCeeeC
Q 037969 292 FTRLEELYM 300 (300)
Q Consensus 292 L~~L~~L~l 300 (300)
+.+|+.|++
T Consensus 276 ~~~l~~L~~ 284 (394)
T COG4886 276 LTNLRELDL 284 (394)
T ss_pred cCccCEEec
Confidence 777777653
No 28
>PLN03150 hypothetical protein; Provisional
Probab=98.89 E-value=5.6e-09 Score=98.12 Aligned_cols=108 Identities=24% Similarity=0.393 Sum_probs=68.4
Q ss_pred ccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEc
Q 037969 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSF 252 (300)
Q Consensus 176 L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l 252 (300)
++.|++.+|.+ .+.+|..+ +.+++|+.|+|++|.+.. +|..++.+++|++|++++|.+.. |..++.+++|++|++
T Consensus 420 v~~L~L~~n~L-~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGL-RGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCc-cccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 55566666665 34556554 667777777777777663 56667777777777777777664 566677777777777
Q ss_pred cCCCCC-CCchhhcCC-CCCCEEeccCCCCccccc
Q 037969 253 LNSDIV-RLPGELGQL-TKLRLLDLTDCLQLKFIV 285 (300)
Q Consensus 253 ~~~~l~-~lp~~~~~l-~~L~~L~l~~~~~l~~lp 285 (300)
++|+++ .+|..++.+ .++..+++.+|..+...|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 777665 666666543 355566666665444433
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=1.2e-09 Score=97.60 Aligned_cols=147 Identities=27% Similarity=0.386 Sum_probs=124.9
Q ss_pred cccCCccEEEeecCCCcccCccccCC--CccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCc
Q 037969 149 DALKKCSAISLLNSSIHEVSEEFECL--QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQ 226 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 226 (300)
.....++.+.+..+.+..++...... +|+.|++.+|.+ ..+|..+ ..++.|+.|+++.|++..+|...+.+.+|+
T Consensus 113 ~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i--~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI--ESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCcccccCccccccchhhcccccccccch--hhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhh
Confidence 44467889999999998888877543 899999999999 8886555 789999999999999999998888899999
Q ss_pred EEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 227 TLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 227 ~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
.|++++|.+.. |..+..+.+|+++.+++|.+...+..+.++.++..+.+.+++ +..++.. ++.+++|++|++
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-~~~l~~l~~L~~ 262 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-IGNLSNLETLDL 262 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-hccccccceecc
Confidence 99999999998 776677778999999999777788889999999999988887 5655554 788888888764
No 30
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.87 E-value=1.8e-09 Score=104.03 Aligned_cols=131 Identities=25% Similarity=0.312 Sum_probs=109.2
Q ss_pred cccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCc--CCcCCc-ccccCCCCcEEEccCCC-CCC-cc
Q 037969 165 HEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMR--LFSLPS-SIGLLANLQTLCLDQSM-LGD-IA 239 (300)
Q Consensus 165 ~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~--~~~lp~-~i~~l~~L~~L~l~~~~-l~~-p~ 239 (300)
...|...+....|...+-+|.+ ..++... ..+.|++|-+.++. +..++. .+..++.|++||+++|. +.. |.
T Consensus 514 ~~~~~~~~~~~~rr~s~~~~~~--~~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~ 589 (889)
T KOG4658|consen 514 SEIPQVKSWNSVRRMSLMNNKI--EHIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS 589 (889)
T ss_pred cccccccchhheeEEEEeccch--hhccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh
Confidence 3466666777888888888888 7777654 45589999999986 566654 47789999999999876 555 99
Q ss_pred cccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 240 IIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 240 ~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
.|+.|-+|++|+++++.+..+|.++++|++|.+|++..+..+..+|. +...|++|++|.+
T Consensus 590 ~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~-i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 590 SIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPG-ILLELQSLRVLRL 649 (889)
T ss_pred HHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccc-hhhhcccccEEEe
Confidence 99999999999999999999999999999999999999987777755 3777999999864
No 31
>PLN03150 hypothetical protein; Provisional
Probab=98.83 E-value=1.1e-08 Score=96.26 Aligned_cols=97 Identities=24% Similarity=0.350 Sum_probs=84.5
Q ss_pred cccEEEeeCCcCCc-CCcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCC-CCchhhcCCCCCCEEecc
Q 037969 201 TLRVIDLTRMRLFS-LPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIV-RLPGELGQLTKLRLLDLT 276 (300)
Q Consensus 201 ~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~ 276 (300)
.++.|+|+++.+.. +|..++.+++|+.|+|++|.+.. |..++.+++|+.|++++|.++ .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999986 79999999999999999999985 788999999999999999988 799999999999999999
Q ss_pred CCCCccccchhhhcCC-CCCCee
Q 037969 277 DCLQLKFIVPNVLSSF-TRLEEL 298 (300)
Q Consensus 277 ~~~~l~~lp~~~l~~L-~~L~~L 298 (300)
+|...+.+|.. ++.+ .++..+
T Consensus 499 ~N~l~g~iP~~-l~~~~~~~~~l 520 (623)
T PLN03150 499 GNSLSGRVPAA-LGGRLLHRASF 520 (623)
T ss_pred CCcccccCChH-HhhccccCceE
Confidence 99977889976 5543 344443
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.81 E-value=4.3e-09 Score=91.10 Aligned_cols=147 Identities=20% Similarity=0.257 Sum_probs=100.5
Q ss_pred CCccEEEeecCCCcc-----cCccc-cC-CCccEEecccCccccc---cCchhHHhcCCcccEEEeeCCcCCc-----CC
Q 037969 152 KKCSAISLLNSSIHE-----VSEEF-EC-LQLEFLHISQNTFVEV---NIPDNIFKGMKTLRVIDLTRMRLFS-----LP 216 (300)
Q Consensus 152 ~~l~~L~l~~~~~~~-----~~~~~-~~-~~L~~L~l~~~~~~~~---~l~~~~~~~l~~L~~L~l~~~~~~~-----lp 216 (300)
++++.|++.+|.+.. +.... .+ ++|+.|++.+|.+... .++.. +..+.+|++|++++|.++. ++
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~l~ 186 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGIGDAGIRALA 186 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCCchHHHHHHH
Confidence 448999999887742 22222 45 7899999999987210 22222 3667789999999998873 44
Q ss_pred cccccCCCCcEEEccCCCCCC------cccccCCCCcCEEEccCCCCCCC-chhhc-----CCCCCCEEeccCCCCc---
Q 037969 217 SSIGLLANLQTLCLDQSMLGD------IAIIGKLKNLEILSFLNSDIVRL-PGELG-----QLTKLRLLDLTDCLQL--- 281 (300)
Q Consensus 217 ~~i~~l~~L~~L~l~~~~l~~------p~~~~~l~~L~~L~l~~~~l~~l-p~~~~-----~l~~L~~L~l~~~~~l--- 281 (300)
..+..+++|++|++++|.+.. ...+..+++|++|++++|.++.. +..+. ..+.|++|++++|...
T Consensus 187 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~ 266 (319)
T cd00116 187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDG 266 (319)
T ss_pred HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHH
Confidence 455666799999999998764 24566788899999999987731 11221 2479999999999732
Q ss_pred -cccchhhhcCCCCCCeeeC
Q 037969 282 -KFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 282 -~~lp~~~l~~L~~L~~L~l 300 (300)
..++.. +..+++|+.+++
T Consensus 267 ~~~l~~~-~~~~~~L~~l~l 285 (319)
T cd00116 267 AKDLAEV-LAEKESLLELDL 285 (319)
T ss_pred HHHHHHH-HhcCCCccEEEC
Confidence 223333 566678887764
No 33
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.80 E-value=8.6e-09 Score=89.20 Aligned_cols=149 Identities=21% Similarity=0.236 Sum_probs=103.6
Q ss_pred ccCCccEEEeecCCCc-ccCccc-cC---CCccEEecccCccccc---cCchhHHhcC-CcccEEEeeCCcCCc-----C
Q 037969 150 ALKKCSAISLLNSSIH-EVSEEF-EC---LQLEFLHISQNTFVEV---NIPDNIFKGM-KTLRVIDLTRMRLFS-----L 215 (300)
Q Consensus 150 ~~~~l~~L~l~~~~~~-~~~~~~-~~---~~L~~L~l~~~~~~~~---~l~~~~~~~l-~~L~~L~l~~~~~~~-----l 215 (300)
..++++.|+++++.+. ..+..+ .+ ++|+.|++.+|.+... .+...+ ..+ ++|+.|++++|.++. +
T Consensus 79 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l-~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 79 KGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGL-KDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred hcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHH-HhCCCCceEEEcCCCcCCchHHHHH
Confidence 4668999999998874 233222 33 4599999999887110 122222 455 899999999999882 4
Q ss_pred CcccccCCCCcEEEccCCCCCC------cccccCCCCcCEEEccCCCCC-----CCchhhcCCCCCCEEeccCCCCccc-
Q 037969 216 PSSIGLLANLQTLCLDQSMLGD------IAIIGKLKNLEILSFLNSDIV-----RLPGELGQLTKLRLLDLTDCLQLKF- 283 (300)
Q Consensus 216 p~~i~~l~~L~~L~l~~~~l~~------p~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~l~~- 283 (300)
+..+..+.+|++|++++|.+.. +..+..+++|++|++++|.+. .++..+..+++|++|++++|. +..
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~ 236 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDA 236 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchH
Confidence 5556777889999999999873 244566779999999999876 344557788999999999998 442
Q ss_pred cchhhhcC----CCCCCeeeC
Q 037969 284 IVPNVLSS----FTRLEELYM 300 (300)
Q Consensus 284 lp~~~l~~----L~~L~~L~l 300 (300)
-+..+... .+.|++|++
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l 257 (319)
T cd00116 237 GAAALASALLSPNISLLTLSL 257 (319)
T ss_pred HHHHHHHHHhccCCCceEEEc
Confidence 12221122 367877764
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.79 E-value=5.5e-09 Score=67.05 Aligned_cols=58 Identities=33% Similarity=0.521 Sum_probs=33.2
Q ss_pred CccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC-cccccCCCCcEEEccCCC
Q 037969 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQTLCLDQSM 234 (300)
Q Consensus 175 ~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~ 234 (300)
+|+.|++.+|.+ ..+|+..|.++++|++|++++|.++.+| ..+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l--~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKL--TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTE--SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCC--CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 455556665555 5555555555666666666666665543 345555556666655554
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.78 E-value=1.8e-09 Score=88.85 Aligned_cols=121 Identities=26% Similarity=0.315 Sum_probs=94.5
Q ss_pred CCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCCccc-ccCCCCcCEEEc
Q 037969 174 LQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAI-IGKLKNLEILSF 252 (300)
Q Consensus 174 ~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~p~~-~~~l~~L~~L~l 252 (300)
..|+.+++++|.+ ..+.++. .-.+.+++|++++|.+..+-. +..+++|+.||+++|.+....+ -.++.|.++|.+
T Consensus 284 q~LtelDLS~N~I--~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLI--TQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccch--hhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 4678888888888 7777766 667888899999888887754 7788888999999888877433 347778888999
Q ss_pred cCCCCCCCchhhcCCCCCCEEeccCCCCccccch-hhhcCCCCCCeeeC
Q 037969 253 LNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVP-NVLSSFTRLEELYM 300 (300)
Q Consensus 253 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~-~~l~~L~~L~~L~l 300 (300)
.+|.++.+ .++++|-+|..||+++|+ +..+.. ..||+|+.|+++.|
T Consensus 360 a~N~iE~L-SGL~KLYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L 406 (490)
T KOG1259|consen 360 AQNKIETL-SGLRKLYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRL 406 (490)
T ss_pred hhhhHhhh-hhhHhhhhheeccccccc-hhhHHHhcccccccHHHHHhh
Confidence 98888877 478899999999999998 555432 22899998887643
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.75 E-value=4.7e-10 Score=95.27 Aligned_cols=140 Identities=23% Similarity=0.312 Sum_probs=99.1
Q ss_pred EeccccccCCCccccCCccEEEeecCCCcccCccc--cCCCccEEecccCccccccCchhHHhcCCcccEEEeeC-CcCC
Q 037969 137 VRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEF--ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTR-MRLF 213 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~-~~~~ 213 (300)
.++.++.++|. .-......+.+..|+++.+|+.. .+++||.|+++.|.+ ..+.+..|.++..+..|-+-+ |+|+
T Consensus 53 Cr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~I--s~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 53 CRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNI--SFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred ccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccch--hhcChHhhhhhHhhhHHHhhcCCchh
Confidence 44455666665 34455677778888887777654 777888888888877 677666677777776655554 7777
Q ss_pred cCCcc-cccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCch-hhcCCCCCCEEeccCCC
Q 037969 214 SLPSS-IGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCL 279 (300)
Q Consensus 214 ~lp~~-i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~ 279 (300)
.+|+. ++.|..|+-|.+.-|.+.. ...+..+++|..|.+.+|.+..++. .+..+.+++++++..|.
T Consensus 130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 77654 6777777777777777665 4667777788888887777777776 46777777777776665
No 37
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.68 E-value=2e-08 Score=64.43 Aligned_cols=56 Identities=32% Similarity=0.455 Sum_probs=32.7
Q ss_pred cccEEEeeCCcCCcCC-cccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCC
Q 037969 201 TLRVIDLTRMRLFSLP-SSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSD 256 (300)
Q Consensus 201 ~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~ 256 (300)
+|++|++++|+++.+| ..+..+++|++|++++|.+.. +..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 4566666666666654 345556666666666666555 3455566666666666554
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=3e-08 Score=85.47 Aligned_cols=59 Identities=27% Similarity=0.342 Sum_probs=38.8
Q ss_pred cCCCCcEEEccCCCCCC-c--ccccCCCCcCEEEccCCCCC--CCchh-----hcCCCCCCEEeccCCC
Q 037969 221 LLANLQTLCLDQSMLGD-I--AIIGKLKNLEILSFLNSDIV--RLPGE-----LGQLTKLRLLDLTDCL 279 (300)
Q Consensus 221 ~l~~L~~L~l~~~~l~~-p--~~~~~l~~L~~L~l~~~~l~--~lp~~-----~~~l~~L~~L~l~~~~ 279 (300)
.++.|+.|+|++|.+.. + ...+.++.|..|+++.|.+. .+|+. ...+++|++|++..|+
T Consensus 244 i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 244 ILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred hhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCc
Confidence 45667777777777655 3 56677777777777777666 33433 3456777777777777
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.45 E-value=3.8e-07 Score=53.90 Aligned_cols=41 Identities=41% Similarity=0.579 Sum_probs=28.1
Q ss_pred CCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccch
Q 037969 245 KNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVP 286 (300)
Q Consensus 245 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 286 (300)
++|++|++++|+++.+|+.+++|++|+.|++++|+ +..+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 46777777777777777767777777777777776 555554
No 40
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.44 E-value=8.6e-08 Score=90.29 Aligned_cols=127 Identities=20% Similarity=0.197 Sum_probs=90.6
Q ss_pred CCccEEEeecCCC--cccC-ccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcE
Q 037969 152 KKCSAISLLNSSI--HEVS-EEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQT 227 (300)
Q Consensus 152 ~~l~~L~l~~~~~--~~~~-~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 227 (300)
.++++|++.+... ..=| ... .+|.|++|.+.+-.+...++ ..++.++++|+.||+++++++.+ ..++.|++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF-~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDF-SQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhH-HHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 4677888877544 1111 122 68889999988766632222 23457789999999999988888 67889999999
Q ss_pred EEccCCCCCC---cccccCCCCcCEEEccCCCCCCCch-------hhcCCCCCCEEeccCCCC
Q 037969 228 LCLDQSMLGD---IAIIGKLKNLEILSFLNSDIVRLPG-------ELGQLTKLRLLDLTDCLQ 280 (300)
Q Consensus 228 L~l~~~~l~~---p~~~~~l~~L~~L~l~~~~l~~lp~-------~~~~l~~L~~L~l~~~~~ 280 (300)
|.+++-.+.. ...+..|++|+.||++......-+. .-..|++||.||.+++..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 9988887775 4778889999999998864332221 234588999999888764
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=5.5e-08 Score=83.90 Aligned_cols=150 Identities=21% Similarity=0.230 Sum_probs=96.5
Q ss_pred cccCCccEEEeecCCCc---ccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc--CCcccccC
Q 037969 149 DALKKCSAISLLNSSIH---EVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS--LPSSIGLL 222 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~---~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l 222 (300)
..+++++.|+++.|-+. .+.... .+|+|+.|+++.|.+... .....-..+.+|+.|.++.|.++. +-...-.+
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~-~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f 221 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF-ISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF 221 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC-ccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence 56777888888877662 233333 788888888887776211 111111346778888888887763 33334567
Q ss_pred CCCcEEEccCCC-CCC-cccccCCCCcCEEEccCCCCCCCc--hhhcCCCCCCEEeccCCCCccccc--hh----hhcCC
Q 037969 223 ANLQTLCLDQSM-LGD-IAIIGKLKNLEILSFLNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFIV--PN----VLSSF 292 (300)
Q Consensus 223 ~~L~~L~l~~~~-l~~-p~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp--~~----~l~~L 292 (300)
++|..|++.+|. +.. -....-++.|+.|+|++|++-.++ .-++.++.|+.|.++.|. +.++. +. ....+
T Consensus 222 Psl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f 300 (505)
T KOG3207|consen 222 PSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTF 300 (505)
T ss_pred CcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhhccc
Confidence 788888888884 222 233345677899999999877666 347889999999998887 44432 10 02456
Q ss_pred CCCCeeeC
Q 037969 293 TRLEELYM 300 (300)
Q Consensus 293 ~~L~~L~l 300 (300)
++|+.|++
T Consensus 301 ~kL~~L~i 308 (505)
T KOG3207|consen 301 PKLEYLNI 308 (505)
T ss_pred ccceeeec
Confidence 67776653
No 42
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.38 E-value=2.3e-07 Score=87.42 Aligned_cols=128 Identities=22% Similarity=0.261 Sum_probs=98.8
Q ss_pred cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc--CCcccccCCCCcEEEccCCCCCCcccccCCCCcCE
Q 037969 172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS--LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEI 249 (300)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~ 249 (300)
.-.+|+.|++.|........|..+...+|.|+.|.+.+-.+.. +-.-..++++|..||++++.++...+++.|++|+.
T Consensus 120 sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~ 199 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQV 199 (699)
T ss_pred HHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHH
Confidence 3468999999998776677777787789999999999876643 33445688999999999999998999999999999
Q ss_pred EEccCCCCCCCc--hhhcCCCCCCEEeccCCCCcccc--ch---hhhcCCCCCCeee
Q 037969 250 LSFLNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFI--VP---NVLSSFTRLEELY 299 (300)
Q Consensus 250 L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~l--p~---~~l~~L~~L~~L~ 299 (300)
|.+++=.++.-+ ..+.+|++|+.||++..+..... .. +.-..|++|+.|+
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLD 256 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLD 256 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEe
Confidence 999876665322 35889999999999987643322 11 1123478888876
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.38 E-value=6.5e-07 Score=69.85 Aligned_cols=103 Identities=20% Similarity=0.350 Sum_probs=72.0
Q ss_pred cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccc-cCCCCcEEEccCCCCCC---cccccCCCCc
Q 037969 172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIG-LLANLQTLCLDQSMLGD---IAIIGKLKNL 247 (300)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~l~~~~l~~---p~~~~~l~~L 247 (300)
-..+...+++.+|.+ ..++. |..++.|.+|.+++|+|+.+-+.++ .+++|+.|.+.+|++.. ...+..++.|
T Consensus 40 ~~d~~d~iDLtdNdl--~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 40 TLDQFDAIDLTDNDL--RKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred cccccceecccccch--hhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 344566777777777 66655 5677888888888888887644443 45668888888887665 4666777788
Q ss_pred CEEEccCCCCCCCchh----hcCCCCCCEEeccCC
Q 037969 248 EILSFLNSDIVRLPGE----LGQLTKLRLLDLTDC 278 (300)
Q Consensus 248 ~~L~l~~~~l~~lp~~----~~~l~~L~~L~l~~~ 278 (300)
++|.+-+|.++.-+.- +..+++|+.||...-
T Consensus 116 ~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 116 EYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 8888888777655432 667788888887653
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.34 E-value=7.6e-07 Score=52.59 Aligned_cols=36 Identities=31% Similarity=0.505 Sum_probs=16.4
Q ss_pred cccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCC
Q 037969 201 TLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLG 236 (300)
Q Consensus 201 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~ 236 (300)
+|++|++++|+++.+|+.++++++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 344445555554444444444444444444444443
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.28 E-value=8.7e-08 Score=86.06 Aligned_cols=82 Identities=21% Similarity=0.311 Sum_probs=38.1
Q ss_pred cccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcc-cccCCCCcE
Q 037969 149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS-IGLLANLQT 227 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~ 227 (300)
..+.+++.|++++|.+..+.....++.|+.|++.+|.+ ..+.. +..+..|+.+++++|.+..+... ...+..++.
T Consensus 115 ~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i--~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~ 190 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLI--SDISG--LESLKSLKLLDLSYNRIVDIENDELSELISLEE 190 (414)
T ss_pred hhhhcchheeccccccccccchhhccchhhheeccCcc--hhccC--CccchhhhcccCCcchhhhhhhhhhhhccchHH
Confidence 33444555555555554444444444455555555554 44333 23344555555555555444321 234444444
Q ss_pred EEccCCC
Q 037969 228 LCLDQSM 234 (300)
Q Consensus 228 L~l~~~~ 234 (300)
+.+.+|.
T Consensus 191 l~l~~n~ 197 (414)
T KOG0531|consen 191 LDLGGNS 197 (414)
T ss_pred HhccCCc
Confidence 4444444
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.24 E-value=7.5e-08 Score=70.46 Aligned_cols=108 Identities=16% Similarity=0.270 Sum_probs=81.9
Q ss_pred ccEEEeecCCCcccCccc----cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEE
Q 037969 154 CSAISLLNSSIHEVSEEF----ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLC 229 (300)
Q Consensus 154 l~~L~l~~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 229 (300)
+..++++.|.+..+++.. ....|...++++|.+ ..+|+.+-..++.+..|++++|.+.++|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 344566666654444432 445667778888888 88888775566788888888888888888888888888888
Q ss_pred ccCCCCCC-cccccCCCCcCEEEccCCCCCCCchh
Q 037969 230 LDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGE 263 (300)
Q Consensus 230 l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~ 263 (300)
++.|.+.. |..+..|.+|-.|+..++...++|-.
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 88888877 87777788888888888877777765
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.23 E-value=2.4e-07 Score=83.27 Aligned_cols=125 Identities=25% Similarity=0.356 Sum_probs=98.5
Q ss_pred cCCccEEEeecCCCcccCc-cccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEE
Q 037969 151 LKKCSAISLLNSSIHEVSE-EFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLC 229 (300)
Q Consensus 151 ~~~l~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 229 (300)
+..+..+++..+.+..+-. ...+.+++.+++.+|.+ ..+...+ ..+.+|++|++++|.|+++. .+..+..|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i--~~i~~~l-~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI--EKIENLL-SSLVNLQVLDLSFNKITKLE-GLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccch--hhcccch-hhhhcchheecccccccccc-chhhccchhhhe
Confidence 4455666677777755333 44788899999999988 6666533 67899999999999998874 366777799999
Q ss_pred ccCCCCCCcccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCC
Q 037969 230 LDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCL 279 (300)
Q Consensus 230 l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 279 (300)
+.+|.+...+.+..+++|+.+++++|.+..+... ...+.+++.+++.+|.
T Consensus 147 l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 147 LSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS 197 (414)
T ss_pred eccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence 9999988877777899999999999988877653 5788899999998887
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.22 E-value=1.5e-07 Score=68.95 Aligned_cols=111 Identities=21% Similarity=0.269 Sum_probs=91.5
Q ss_pred CCccEEecccCccccccCchhH--HhcCCcccEEEeeCCcCCcCCccccc-CCCCcEEEccCCCCCC-cccccCCCCcCE
Q 037969 174 LQLEFLHISQNTFVEVNIPDNI--FKGMKTLRVIDLTRMRLFSLPSSIGL-LANLQTLCLDQSMLGD-IAIIGKLKNLEI 249 (300)
Q Consensus 174 ~~L~~L~l~~~~~~~~~l~~~~--~~~l~~L~~L~l~~~~~~~lp~~i~~-l~~L~~L~l~~~~l~~-p~~~~~l~~L~~ 249 (300)
..+..++++.|++ ..+++.. .....+|...+|++|.+.++|+.+.. ++....+++.+|.+.+ |..+..++.|+.
T Consensus 27 kE~h~ldLssc~l--m~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQL--MYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccchh--hHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhh
Confidence 3456678888887 6666533 24556788899999999999988754 4589999999999999 988999999999
Q ss_pred EEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchh
Q 037969 250 LSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPN 287 (300)
Q Consensus 250 L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~ 287 (300)
|+++.|.+...|+-+..|.+|..|+..++. ...+|-.
T Consensus 105 lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d 141 (177)
T KOG4579|consen 105 LNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD 141 (177)
T ss_pred cccccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence 999999999999999999999999998887 5566543
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.19 E-value=2.2e-08 Score=91.45 Aligned_cols=129 Identities=25% Similarity=0.230 Sum_probs=94.2
Q ss_pred cCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEE
Q 037969 151 LKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLC 229 (300)
Q Consensus 151 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 229 (300)
+..+...+.+.|.+..+.... -++.++.|+++.|++ .... . +..+++|+.|||++|.++.+|.--..=..|+.|.
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~--~~v~-~-Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKF--TKVD-N-LRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhh--hhhH-H-HHhcccccccccccchhccccccchhhhhheeee
Confidence 445666677777776555555 567888899998888 5554 3 4788899999999998888775322223488899
Q ss_pred ccCCCCCCcccccCCCCcCEEEccCCCCC---CCchhhcCCCCCCEEeccCCCCccccc
Q 037969 230 LDQSMLGDIAIIGKLKNLEILSFLNSDIV---RLPGELGQLTKLRLLDLTDCLQLKFIV 285 (300)
Q Consensus 230 l~~~~l~~p~~~~~l~~L~~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~~~~l~~lp 285 (300)
+++|.+...-++.+|.+|+.||+++|-+. ++ ..++.|..|+.|+|.+|+ +..-|
T Consensus 239 lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL-~pLwsLs~L~~L~LeGNP-l~c~p 295 (1096)
T KOG1859|consen 239 LRNNALTTLRGIENLKSLYGLDLSYNLLSEHSEL-EPLWSLSSLIVLWLEGNP-LCCAP 295 (1096)
T ss_pred ecccHHHhhhhHHhhhhhhccchhHhhhhcchhh-hHHHHHHHHHHHhhcCCc-cccCH
Confidence 99988887777888889999999888555 33 236677888888888887 44433
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.15 E-value=1.1e-05 Score=70.82 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=21.6
Q ss_pred CCcCEEEccCCCCCCCchhhcCCCCCCEEeccCC
Q 037969 245 KNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDC 278 (300)
Q Consensus 245 ~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~ 278 (300)
++|++|++++|....+|..+. .+|++|+++.+
T Consensus 156 sSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 156 PSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred CcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 468888888886655665443 47777777654
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.02 E-value=2e-07 Score=85.44 Aligned_cols=99 Identities=21% Similarity=0.308 Sum_probs=68.1
Q ss_pred CccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCCcccc--cCCCCcCEEEc
Q 037969 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAII--GKLKNLEILSF 252 (300)
Q Consensus 175 ~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~p~~~--~~l~~L~~L~l 252 (300)
.|.+.++++|.+ ..+..++ .-++.++.|+|++|+++++- .+..++.|++|||++|.+...+.+ ..+ .|+.|.+
T Consensus 165 ~L~~a~fsyN~L--~~mD~SL-qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRL--VLMDESL-QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhH--HhHHHHH-HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeee
Confidence 344445555555 4444443 56677888888888887764 677788888888888887762222 222 3888888
Q ss_pred cCCCCCCCchhhcCCCCCCEEeccCCC
Q 037969 253 LNSDIVRLPGELGQLTKLRLLDLTDCL 279 (300)
Q Consensus 253 ~~~~l~~lp~~~~~l~~L~~L~l~~~~ 279 (300)
++|.++++ .++.+|.+|+.||++.|-
T Consensus 240 rnN~l~tL-~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 240 RNNALTTL-RGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred cccHHHhh-hhHHhhhhhhccchhHhh
Confidence 88888877 468888888888888775
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=2.6e-05 Score=68.50 Aligned_cols=117 Identities=18% Similarity=0.294 Sum_probs=77.4
Q ss_pred cCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC-cCCcCCcccccCCCCcEEE
Q 037969 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM-RLFSLPSSIGLLANLQTLC 229 (300)
Q Consensus 151 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~L~ 229 (300)
..+++.|++++|.+..+|.. -++|++|.+.+|..+ ..+|+.+ ..+|++|.+++| .+..+|+. |+.|+
T Consensus 51 ~~~l~~L~Is~c~L~sLP~L--P~sLtsL~Lsnc~nL-tsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPVL--PNELTEITIENCNNL-TTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred hcCCCEEEeCCCCCcccCCC--CCCCcEEEccCCCCc-ccCCchh---hhhhhheEccCcccccccccc------cceEE
Confidence 46688999999988888832 236999999876553 6677654 368999999988 67667754 66677
Q ss_pred ccCCCCCCcccccCC-CCcCEEEccCCC-C--CCCchhhcCC-CCCCEEeccCCCCccccch
Q 037969 230 LDQSMLGDIAIIGKL-KNLEILSFLNSD-I--VRLPGELGQL-TKLRLLDLTDCLQLKFIVP 286 (300)
Q Consensus 230 l~~~~l~~p~~~~~l-~~L~~L~l~~~~-l--~~lp~~~~~l-~~L~~L~l~~~~~l~~lp~ 286 (300)
+.++.... +..+ ++|+.|.+.+++ . ..+|. .+ ++|++|++++|..+ .+|.
T Consensus 119 L~~n~~~~---L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~ 173 (426)
T PRK15386 119 IKGSATDS---IKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPE 173 (426)
T ss_pred eCCCCCcc---cccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCcc
Confidence 76654322 2223 257777775432 1 12221 23 58999999999843 4454
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.79 E-value=8.1e-05 Score=58.40 Aligned_cols=100 Identities=19% Similarity=0.246 Sum_probs=82.9
Q ss_pred CccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC--cccccCCCCcEEEc
Q 037969 153 KCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP--SSIGLLANLQTLCL 230 (300)
Q Consensus 153 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~l 230 (300)
....+++.+|.+..++....++.|.+|.+..|.+ ..+.+.+...+++|.+|.|.+|++.++. ..+..++.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrI--t~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRI--TRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhcccCCCccccceEEecCCcc--eeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 4567889999988888877899999999999999 8888877667788999999999988753 23556789999999
Q ss_pred cCCCCCC-----cccccCCCCcCEEEccC
Q 037969 231 DQSMLGD-----IAIIGKLKNLEILSFLN 254 (300)
Q Consensus 231 ~~~~l~~-----p~~~~~l~~L~~L~l~~ 254 (300)
-+|.+.. .--+.++++|++||.++
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 9998765 35678999999999875
No 54
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.72 E-value=2e-05 Score=66.64 Aligned_cols=130 Identities=18% Similarity=0.239 Sum_probs=96.6
Q ss_pred ccCCccEEEeecCCCcccCc-----cc-cCCCccEEecccCccccccC--chhHHhcCCcccEEEeeCCcCCc-----CC
Q 037969 150 ALKKCSAISLLNSSIHEVSE-----EF-ECLQLEFLHISQNTFVEVNI--PDNIFKGMKTLRVIDLTRMRLFS-----LP 216 (300)
Q Consensus 150 ~~~~l~~L~l~~~~~~~~~~-----~~-~~~~L~~L~l~~~~~~~~~l--~~~~~~~l~~L~~L~l~~~~~~~-----lp 216 (300)
..+.+|.+..+.|.+..-+. .+ ..+.|+.+.+..|.+....+ -..-+..+++|++|||+.|.++. +.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 34578899998888744332 23 55789999998887722111 11224788999999999998874 45
Q ss_pred cccccCCCCcEEEccCCCCCC--c----ccc-cCCCCcCEEEccCCCCC-----CCchhhcCCCCCCEEeccCCC
Q 037969 217 SSIGLLANLQTLCLDQSMLGD--I----AII-GKLKNLEILSFLNSDIV-----RLPGELGQLTKLRLLDLTDCL 279 (300)
Q Consensus 217 ~~i~~l~~L~~L~l~~~~l~~--p----~~~-~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~ 279 (300)
+.++.+++|+.|++++|.++. - ..+ ...++|++|.+.+|.++ .+..++...+.|+.|.+++|+
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 667888999999999999875 2 222 24689999999999887 344567788999999999998
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=3.4e-06 Score=69.80 Aligned_cols=127 Identities=20% Similarity=0.223 Sum_probs=56.4
Q ss_pred cCCccEEEeecCCC-cccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc--C---CcccccCC
Q 037969 151 LKKCSAISLLNSSI-HEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS--L---PSSIGLLA 223 (300)
Q Consensus 151 ~~~l~~L~l~~~~~-~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~--l---p~~i~~l~ 223 (300)
.++++.|++.++.+ +.+...+ +-.+|+.|+++.+.-....--.-++.+++.|..|++++|.+.. + -..|+ .
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his--e 286 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS--E 286 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc--h
Confidence 34455555555555 2222222 4456666666654432222222334566666666666664432 0 01111 2
Q ss_pred CCcEEEccCCC--CCC--ccc-ccCCCCcCEEEccCC-CCC-CCchhhcCCCCCCEEeccCCC
Q 037969 224 NLQTLCLDQSM--LGD--IAI-IGKLKNLEILSFLNS-DIV-RLPGELGQLTKLRLLDLTDCL 279 (300)
Q Consensus 224 ~L~~L~l~~~~--l~~--p~~-~~~l~~L~~L~l~~~-~l~-~lp~~~~~l~~L~~L~l~~~~ 279 (300)
+|..|+++|+. +.. ... ...+++|..|++++| .++ ..-..+.+++.|++|.++.|.
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 33444444433 111 111 234555555555555 333 222334555555555555554
No 56
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.47 E-value=6.6e-05 Score=63.52 Aligned_cols=106 Identities=16% Similarity=0.178 Sum_probs=59.1
Q ss_pred cCCCccEEecccCccccccCch----hHHhcCCcccEEEeeCCcCCc-----CCcccccCCCCcEEEccCCCCCC-----
Q 037969 172 ECLQLEFLHISQNTFVEVNIPD----NIFKGMKTLRVIDLTRMRLFS-----LPSSIGLLANLQTLCLDQSMLGD----- 237 (300)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~~l~~----~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~l~~----- 237 (300)
.-++||++....|.+ ..-+. ..|...+.|+.+.+..|.|.. +...+...++|+.||+++|.++.
T Consensus 155 ~~~~Lrv~i~~rNrl--en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRL--ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred CCcceEEEEeecccc--ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 445666666666655 33222 224455666666666665542 23345566667777777776553
Q ss_pred -cccccCCCCcCEEEccCCCCCC-----Cchhh-cCCCCCCEEeccCCC
Q 037969 238 -IAIIGKLKNLEILSFLNSDIVR-----LPGEL-GQLTKLRLLDLTDCL 279 (300)
Q Consensus 238 -p~~~~~l~~L~~L~l~~~~l~~-----lp~~~-~~l~~L~~L~l~~~~ 279 (300)
-..+..+++|+.|++++|.++. +-..+ ...++|+.|.+.+|.
T Consensus 233 LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 1455566667777777766551 22222 224667777776665
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.46 E-value=5.1e-05 Score=61.77 Aligned_cols=61 Identities=23% Similarity=0.364 Sum_probs=26.9
Q ss_pred cCCcccEEEeeCC--cCCc-CCcccccCCCCcEEEccCCCCCC---cccccCCCCcCEEEccCCCCC
Q 037969 198 GMKTLRVIDLTRM--RLFS-LPSSIGLLANLQTLCLDQSMLGD---IAIIGKLKNLEILSFLNSDIV 258 (300)
Q Consensus 198 ~l~~L~~L~l~~~--~~~~-lp~~i~~l~~L~~L~l~~~~l~~---p~~~~~l~~L~~L~l~~~~l~ 258 (300)
.+++|+.|.++.| ++.. ++...-.+++|+++++++|.++. ......+++|..|++..|..+
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT 129 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence 3444455555444 2221 22223333555555555555443 233344445555555555444
No 58
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=5.3e-06 Score=68.70 Aligned_cols=146 Identities=19% Similarity=0.212 Sum_probs=99.2
Q ss_pred CccEEEeecCCCc--ccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC-cCCcC--CcccccCCCCc
Q 037969 153 KCSAISLLNSSIH--EVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM-RLFSL--PSSIGLLANLQ 226 (300)
Q Consensus 153 ~l~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~-~~~~l--p~~i~~l~~L~ 226 (300)
.+++++++...+. .+.... .|.+|+.|.+.|+.+ ...+-..+ ..-.+|+.|+++++ .+++. ---+.+++.|.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~L-dD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRL-DDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhcccccccc-CcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 4678888877763 333333 788999999998887 23344444 55678999999987 45542 23367889999
Q ss_pred EEEccCCCCCCc--c-cccC-CCCcCEEEccCC--CCC--CCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCee
Q 037969 227 TLCLDQSMLGDI--A-IIGK-LKNLEILSFLNS--DIV--RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL 298 (300)
Q Consensus 227 ~L~l~~~~l~~p--~-~~~~-l~~L~~L~l~~~--~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L 298 (300)
.|++++|.+..+ . .+.. -++|..|+++|| ++. .+..-..+.++|.+||+++|..++.--...+.+++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 999999987652 1 1111 257899999998 332 2222256789999999999976664322236677777777
Q ss_pred eC
Q 037969 299 YM 300 (300)
Q Consensus 299 ~l 300 (300)
.+
T Consensus 344 Sl 345 (419)
T KOG2120|consen 344 SL 345 (419)
T ss_pred eh
Confidence 54
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.38 E-value=1.2e-05 Score=65.95 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=41.1
Q ss_pred CCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC---cccccCCCCcCE
Q 037969 173 CLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD---IAIIGKLKNLEI 249 (300)
Q Consensus 173 ~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~---p~~~~~l~~L~~ 249 (300)
+.+.+.|+..||.+ ..+ +++..|+.|.+|.|+-|.|+++. .+...++|+.|.|+.|.+.. ..-+.++++|++
T Consensus 18 l~~vkKLNcwg~~L--~DI--sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGL--DDI--SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCc--cHH--HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 34455555555555 333 23455666666666666665552 24455555666665555554 233445555555
Q ss_pred EEccCC
Q 037969 250 LSFLNS 255 (300)
Q Consensus 250 L~l~~~ 255 (300)
|-|..|
T Consensus 93 LWL~EN 98 (388)
T KOG2123|consen 93 LWLDEN 98 (388)
T ss_pred HhhccC
Confidence 555444
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=6.2e-05 Score=62.52 Aligned_cols=162 Identities=12% Similarity=0.199 Sum_probs=97.6
Q ss_pred EeccccccCCCc----cccCCccEEEeecCCCc-ccCcc-ccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC
Q 037969 137 VRNEVVWEWPDE----DALKKCSAISLLNSSIH-EVSEE-FECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210 (300)
Q Consensus 137 ~~~~~~~~~~~~----~~~~~l~~L~l~~~~~~-~~~~~-~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~ 210 (300)
...+.+..|... ..++.++.|+++.|.+. .+... ....+|++|.+.|..+..... .+....++.++.|+++.|
T Consensus 78 L~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~-~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 78 LTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQS-TSSLDDLPKVTELHMSDN 156 (418)
T ss_pred cccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhh-hhhhhcchhhhhhhhccc
Confidence 344445555543 56778888888888772 22222 366788888888766521222 333466777777777776
Q ss_pred cCCcC---Cccc---------------------------ccCCCCcEEEccCCCCCC---cccccCCCCcCEEEccCCCC
Q 037969 211 RLFSL---PSSI---------------------------GLLANLQTLCLDQSMLGD---IAIIGKLKNLEILSFLNSDI 257 (300)
Q Consensus 211 ~~~~l---p~~i---------------------------~~l~~L~~L~l~~~~l~~---p~~~~~l~~L~~L~l~~~~l 257 (300)
++..+ -+.+ .-++++..+.+..|.++. -++...++.+-.|+++.+++
T Consensus 157 ~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~i 236 (418)
T KOG2982|consen 157 SLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNI 236 (418)
T ss_pred hhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccccc
Confidence 43321 0001 123455555555555544 24555677777888888877
Q ss_pred CCCc--hhhcCCCCCCEEeccCCCCccccchh-----hhcCCCCCCeee
Q 037969 258 VRLP--GELGQLTKLRLLDLTDCLQLKFIVPN-----VLSSFTRLEELY 299 (300)
Q Consensus 258 ~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~~-----~l~~L~~L~~L~ 299 (300)
.... ..+..++.|+.|.+.+++....+..+ .++.|++++.|+
T Consensus 237 dswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 237 DSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred ccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 6432 35778889999999988865544321 367788887764
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.22 E-value=0.00017 Score=58.82 Aligned_cols=98 Identities=23% Similarity=0.346 Sum_probs=66.7
Q ss_pred CCcccEEEeeCCcCCcCCcccccCCCCcEEEccCC--CCCC--cccccCCCCcCEEEccCCCCC---CCchhhcCCCCCC
Q 037969 199 MKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQS--MLGD--IAIIGKLKNLEILSFLNSDIV---RLPGELGQLTKLR 271 (300)
Q Consensus 199 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~--~l~~--p~~~~~l~~L~~L~l~~~~l~---~lp~~~~~l~~L~ 271 (300)
+..|+.|++.+..++++ ..+..|++|++|.++.| .+.. +....++++|++|++++|.+. .++ ...++.+|.
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~-pl~~l~nL~ 119 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR-PLKELENLK 119 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc-hhhhhcchh
Confidence 34455555555555443 23446789999999999 4443 344456699999999999776 443 467888999
Q ss_pred EEeccCCCCccccc---hhhhcCCCCCCeee
Q 037969 272 LLDLTDCLQLKFIV---PNVLSSFTRLEELY 299 (300)
Q Consensus 272 ~L~l~~~~~l~~lp---~~~l~~L~~L~~L~ 299 (300)
.|++..|.... +- ..++.-+++|+.|+
T Consensus 120 ~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 120 SLDLFNCSVTN-LDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhcccCCccc-cccHHHHHHHHhhhhcccc
Confidence 99999997433 32 34466678887764
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.00015 Score=60.25 Aligned_cols=124 Identities=19% Similarity=0.221 Sum_probs=82.1
Q ss_pred ccEEEeecCCCcccCcc---c-cCCCccEEecccCccccccCch--hHHhcCCcccEEEeeCCcCCcCCccc-ccCCCCc
Q 037969 154 CSAISLLNSSIHEVSEE---F-ECLQLEFLHISQNTFVEVNIPD--NIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQ 226 (300)
Q Consensus 154 l~~L~l~~~~~~~~~~~---~-~~~~L~~L~l~~~~~~~~~l~~--~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~ 226 (300)
+..+.+-++.+...... . .++.++.+++.+|.+ ....+ .++.+++.|++|+++.|++...-.+. -.+.+|+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~i--SdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLI--SDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLR 124 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchh--ccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceE
Confidence 33455555655433322 1 677889999999888 44332 45678899999999999876533333 3667899
Q ss_pred EEEccCCCCCC---cccccCCCCcCEEEccCCCCCCCc---hhhcCC-CCCCEEeccCCC
Q 037969 227 TLCLDQSMLGD---IAIIGKLKNLEILSFLNSDIVRLP---GELGQL-TKLRLLDLTDCL 279 (300)
Q Consensus 227 ~L~l~~~~l~~---p~~~~~l~~L~~L~l~~~~l~~lp---~~~~~l-~~L~~L~l~~~~ 279 (300)
+|.|.++.+.. -..+..+|.++.|.++.|+++.+- .++... +.+++|+...|.
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~ 184 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCL 184 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcH
Confidence 99999888764 366778888899988888665331 122222 356666666664
No 63
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.72 E-value=0.00055 Score=33.67 Aligned_cols=19 Identities=21% Similarity=0.541 Sum_probs=9.7
Q ss_pred cCEEEccCCCCCCCchhhc
Q 037969 247 LEILSFLNSDIVRLPGELG 265 (300)
Q Consensus 247 L~~L~l~~~~l~~lp~~~~ 265 (300)
|++|++++|+++.+|.+++
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555554443
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=7.3e-05 Score=61.55 Aligned_cols=97 Identities=22% Similarity=0.252 Sum_probs=67.8
Q ss_pred cCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC--cccccCCCCcEE
Q 037969 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP--SSIGLLANLQTL 228 (300)
Q Consensus 151 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L 228 (300)
+.+++.|++.++.+..+.-..+++.|++|.++-|.+ ..+.+ +..++.|+.|.|..|.|..+- .-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkI--ssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKI--SSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHHHHhcccceeEEeecccc--ccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 345666777777776665555778888888888877 55554 467788888888888877753 346678888888
Q ss_pred EccCCCCCC--c-----ccccCCCCcCEEE
Q 037969 229 CLDQSMLGD--I-----AIIGKLKNLEILS 251 (300)
Q Consensus 229 ~l~~~~l~~--p-----~~~~~l~~L~~L~ 251 (300)
.|..|.-.. + ..+..|+||+.|+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 887776332 2 4566778888776
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.62 E-value=0.0071 Score=44.60 Aligned_cols=116 Identities=18% Similarity=0.328 Sum_probs=56.1
Q ss_pred cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc-ccccCCCCcEEEccCCCCCC--cccccCCCCcC
Q 037969 172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANLQTLCLDQSMLGD--IAIIGKLKNLE 248 (300)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~ 248 (300)
++++|+.+.+.. .. ..+++..|.++..|+.+.+..+ +..++. .+.....++.+.+.. .+.. ...+..+++|+
T Consensus 10 ~~~~l~~i~~~~-~~--~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPN-TI--KKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECC-Ce--eEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 556777777664 34 5666666777777888888764 666543 355565788888865 3333 34556678888
Q ss_pred EEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCC
Q 037969 249 ILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLE 296 (300)
Q Consensus 249 ~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~ 296 (300)
.+.+..+ +..++.. +.+. +|+.+.+.. .+..++...+.+.++|+
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG------
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccCC
Confidence 8888654 5555544 4554 788887765 25566666666666653
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.54 E-value=0.001 Score=32.70 Aligned_cols=21 Identities=38% Similarity=0.494 Sum_probs=13.1
Q ss_pred cccEEEeeCCcCCcCCccccc
Q 037969 201 TLRVIDLTRMRLFSLPSSIGL 221 (300)
Q Consensus 201 ~L~~L~l~~~~~~~lp~~i~~ 221 (300)
+|++|++++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356667777766666665543
No 67
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.94 E-value=0.0053 Score=27.98 Aligned_cols=16 Identities=38% Similarity=0.638 Sum_probs=6.1
Q ss_pred CcCEEEccCCCCCCCc
Q 037969 246 NLEILSFLNSDIVRLP 261 (300)
Q Consensus 246 ~L~~L~l~~~~l~~lp 261 (300)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.69 E-value=0.021 Score=47.34 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=6.8
Q ss_pred CCCCcCEEEccCCCC
Q 037969 243 KLKNLEILSFLNSDI 257 (300)
Q Consensus 243 ~l~~L~~L~l~~~~l 257 (300)
-+.+|+.|+++.|-+
T Consensus 212 y~~~LevLDlqDNtf 226 (388)
T COG5238 212 YSHSLEVLDLQDNTF 226 (388)
T ss_pred HhCcceeeeccccch
Confidence 334444444444433
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.31 E-value=0.011 Score=26.88 Aligned_cols=16 Identities=56% Similarity=0.845 Sum_probs=6.6
Q ss_pred cccEEEeeCCcCCcCC
Q 037969 201 TLRVIDLTRMRLFSLP 216 (300)
Q Consensus 201 ~L~~L~l~~~~~~~lp 216 (300)
+|++|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555443
No 70
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.26 E-value=0.054 Score=39.80 Aligned_cols=103 Identities=18% Similarity=0.303 Sum_probs=62.1
Q ss_pred CchhHHhcCCcccEEEeeCCcCCcCCc-ccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchh-hcC
Q 037969 191 IPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGE-LGQ 266 (300)
Q Consensus 191 l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~ 266 (300)
+++..|.+..+|+.+.+.. .++.+++ .+....+|+.+.+..+ +.. -..+..+++++.+.+.. .+..++.. +..
T Consensus 3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence 4556678888999999985 5777654 4677778999999875 655 35677887899999976 55555554 566
Q ss_pred CCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969 267 LTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299 (300)
Q Consensus 267 l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 299 (300)
.++|+.+.+..+ +..++...+.+. +|+.+.
T Consensus 80 ~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~ 109 (129)
T PF13306_consen 80 CTNLKNIDIPSN--ITEIGSSSFSNC-NLKEIN 109 (129)
T ss_dssp -TTECEEEETTT---BEEHTTTTTT--T--EEE
T ss_pred cccccccccCcc--ccEEchhhhcCC-CceEEE
Confidence 899999999653 567776656665 776654
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.19 E-value=0.00034 Score=56.23 Aligned_cols=83 Identities=14% Similarity=0.124 Sum_probs=53.6
Q ss_pred cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC-cccccCCCCcCEE
Q 037969 172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD-IAIIGKLKNLEIL 250 (300)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L 250 (300)
.+...+.|+++.|.. ..+-..+ +-+..|..|+++.+.+..+|+.++.+..++.+++..|..+. |.+.++.++++++
T Consensus 40 ~~kr~tvld~~s~r~--vn~~~n~-s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRL--VNLGKNF-SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHH--Hhhccch-HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 556666677776665 4444333 55566666677776666677777766666666666666665 6667777777777
Q ss_pred EccCCCC
Q 037969 251 SFLNSDI 257 (300)
Q Consensus 251 ~l~~~~l 257 (300)
++.+|.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 7666653
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.99 E-value=0.034 Score=46.17 Aligned_cols=109 Identities=19% Similarity=0.249 Sum_probs=76.3
Q ss_pred ccCCCccEEecccCccccccCch---hHHhcCCcccEEEeeCCcCCcC-Cc-------------ccccCCCCcEEEccCC
Q 037969 171 FECLQLEFLHISQNTFVEVNIPD---NIFKGMKTLRVIDLTRMRLFSL-PS-------------SIGLLANLQTLCLDQS 233 (300)
Q Consensus 171 ~~~~~L~~L~l~~~~~~~~~l~~---~~~~~l~~L~~L~l~~~~~~~l-p~-------------~i~~l~~L~~L~l~~~ 233 (300)
.+||+|+..++++|.+ +...|+ .+.+.-..|..|.+++|.+..+ .. .+.+-+.|++.....|
T Consensus 89 lkcp~l~~v~LSDNAf-g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 89 LKCPRLQKVDLSDNAF-GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred hcCCcceeeecccccc-CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 3788899999998887 234443 2236677889999998876532 11 2234578999999999
Q ss_pred CCCC-c-----ccccCCCCcCEEEccCCCCCC------CchhhcCCCCCCEEeccCCCC
Q 037969 234 MLGD-I-----AIIGKLKNLEILSFLNSDIVR------LPGELGQLTKLRLLDLTDCLQ 280 (300)
Q Consensus 234 ~l~~-p-----~~~~~l~~L~~L~l~~~~l~~------lp~~~~~l~~L~~L~l~~~~~ 280 (300)
++.. + ..+..-.+|+++.+..|.|+. +--++..+.+|+.|++.+|..
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 8776 4 233344689999999998761 112356788999999999873
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.23 E-value=0.048 Score=27.76 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=10.6
Q ss_pred CCcCEEEccCCCCCCCchh
Q 037969 245 KNLEILSFLNSDIVRLPGE 263 (300)
Q Consensus 245 ~~L~~L~l~~~~l~~lp~~ 263 (300)
++|++|++.+|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555555555555555554
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.23 E-value=0.048 Score=27.76 Aligned_cols=19 Identities=32% Similarity=0.452 Sum_probs=10.6
Q ss_pred CCcCEEEccCCCCCCCchh
Q 037969 245 KNLEILSFLNSDIVRLPGE 263 (300)
Q Consensus 245 ~~L~~L~l~~~~l~~lp~~ 263 (300)
++|++|++.+|.++.+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555555555555555554
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.69 E-value=0.028 Score=51.34 Aligned_cols=110 Identities=25% Similarity=0.294 Sum_probs=59.0
Q ss_pred cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC--cCCc----CCcccccCCCCcEEEccCCC-CCC--ccccc
Q 037969 172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM--RLFS----LPSSIGLLANLQTLCLDQSM-LGD--IAIIG 242 (300)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~--~~~~----lp~~i~~l~~L~~L~l~~~~-l~~--p~~~~ 242 (300)
.+++|+.+.+.++......--..+....+.|+.|+++++ .+.. .+.....+.+|+.|+++++. +.+ ...+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666665543211101223355677777777662 1111 11223344667777777766 443 33333
Q ss_pred C-CCCcCEEEccCCC-CC--CCchhhcCCCCCCEEeccCCCCc
Q 037969 243 K-LKNLEILSFLNSD-IV--RLPGELGQLTKLRLLDLTDCLQL 281 (300)
Q Consensus 243 ~-l~~L~~L~l~~~~-l~--~lp~~~~~l~~L~~L~l~~~~~l 281 (300)
. +++|++|.+.+|. ++ .+-.....++.|++|+++.|..+
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3 6677777766663 44 33333445666777777777654
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.50 E-value=0.0025 Score=51.42 Aligned_cols=80 Identities=13% Similarity=0.129 Sum_probs=40.7
Q ss_pred CccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEcc
Q 037969 153 KCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLD 231 (300)
Q Consensus 153 ~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~ 231 (300)
..+.|+++.+....+...+ .++.+..|+++.|.+ ..+|..+ ++...++.+++..|..+..|.+.+.+++++++++.
T Consensus 43 r~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~--~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQI--KFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHHhhccchHHHHHHHHHhccHhhH--hhChhhH-HHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence 3444555544443222222 334444555555555 5555544 55555555555555555555555555555555555
Q ss_pred CCCC
Q 037969 232 QSML 235 (300)
Q Consensus 232 ~~~l 235 (300)
++.+
T Consensus 120 ~~~~ 123 (326)
T KOG0473|consen 120 KTEF 123 (326)
T ss_pred cCcc
Confidence 5543
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.47 E-value=0.019 Score=45.42 Aligned_cols=79 Identities=20% Similarity=0.245 Sum_probs=56.6
Q ss_pred cccEEEeeCCcCCcC-CcccccCCCCcEEEccCCC-CCC--cccccC-CCCcCEEEccCC-CCCCC-chhhcCCCCCCEE
Q 037969 201 TLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQSM-LGD--IAIIGK-LKNLEILSFLNS-DIVRL-PGELGQLTKLRLL 273 (300)
Q Consensus 201 ~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~-l~~--p~~~~~-l~~L~~L~l~~~-~l~~l-p~~~~~l~~L~~L 273 (300)
.++.++=+++.|... -+.+.+++.++.|.+.+|. +.+ .+-++. .++|+.|++++| +|++- -..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 466777777777653 3557778888888888876 333 444444 478999999999 88832 2468889999999
Q ss_pred eccCCC
Q 037969 274 DLTDCL 279 (300)
Q Consensus 274 ~l~~~~ 279 (300)
++.+-+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 887644
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.20 E-value=0.091 Score=26.69 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.0
Q ss_pred CCCCCEEeccCCCCccccchhhh
Q 037969 267 LTKLRLLDLTDCLQLKFIVPNVL 289 (300)
Q Consensus 267 l~~L~~L~l~~~~~l~~lp~~~l 289 (300)
|++|++|++++|. +..+|.+++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQ-LSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHc
Confidence 5789999999998 999998754
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.20 E-value=0.091 Score=26.69 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=19.0
Q ss_pred CCCCCEEeccCCCCccccchhhh
Q 037969 267 LTKLRLLDLTDCLQLKFIVPNVL 289 (300)
Q Consensus 267 l~~L~~L~l~~~~~l~~lp~~~l 289 (300)
|++|++|++++|. +..+|.+++
T Consensus 1 L~~L~~L~L~~N~-l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQ-LSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCc-CCcCCHHHc
Confidence 5789999999998 999998754
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.65 E-value=0.032 Score=44.12 Aligned_cols=79 Identities=23% Similarity=0.402 Sum_probs=52.0
Q ss_pred CccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC-c-CCccc-ccCCCCcEEEccCCC-CCC--cccccCCCCcC
Q 037969 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF-S-LPSSI-GLLANLQTLCLDQSM-LGD--IAIIGKLKNLE 248 (300)
Q Consensus 175 ~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~-~-lp~~i-~~l~~L~~L~l~~~~-l~~--p~~~~~l~~L~ 248 (300)
.++.++-+++.+. ..--+. +.+++.++.|.+.++.-- . --+-+ +..++|+.|++++|. |++ ...+.++++|+
T Consensus 102 ~IeaVDAsds~I~-~eGle~-L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIM-YEGLEH-LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHH-HHHHHH-HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 4566666666662 222222 367788888888877422 1 01112 245789999999887 665 78899999999
Q ss_pred EEEccCC
Q 037969 249 ILSFLNS 255 (300)
Q Consensus 249 ~L~l~~~ 255 (300)
.|.+.+-
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 9988763
No 81
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=90.90 E-value=0.15 Score=44.98 Aligned_cols=36 Identities=28% Similarity=0.467 Sum_probs=14.9
Q ss_pred CCCcCEEEccCCCCC--CCchhhcCCCCCCEEeccCCC
Q 037969 244 LKNLEILSFLNSDIV--RLPGELGQLTKLRLLDLTDCL 279 (300)
Q Consensus 244 l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~ 279 (300)
+..|..+.+.+|... ..-..+...++|+.+++-+|.
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 334444444444222 122233344445555554444
No 82
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.20 E-value=0.41 Score=24.37 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=12.7
Q ss_pred CCcCEEEccCCCCCCCch
Q 037969 245 KNLEILSFLNSDIVRLPG 262 (300)
Q Consensus 245 ~~L~~L~l~~~~l~~lp~ 262 (300)
++|+.|++++|+++++|.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357777777777777775
No 83
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=85.21 E-value=0.48 Score=43.23 Aligned_cols=127 Identities=23% Similarity=0.283 Sum_probs=75.7
Q ss_pred cCCccEEEeecCCC-cc--c-CccccCCCccEEecccCccccccCc---hhHHhcCCcccEEEeeCCc-CCcC-Ccccc-
Q 037969 151 LKKCSAISLLNSSI-HE--V-SEEFECLQLEFLHISQNTFVEVNIP---DNIFKGMKTLRVIDLTRMR-LFSL-PSSIG- 220 (300)
Q Consensus 151 ~~~l~~L~l~~~~~-~~--~-~~~~~~~~L~~L~l~~~~~~~~~l~---~~~~~~l~~L~~L~l~~~~-~~~l-p~~i~- 220 (300)
.+.++.+.+..+.. .. + +....+++|+.|++.++.......+ ......+.+|+.|+++++. ++.. -..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45666777766543 22 2 2233889999999986311001111 1233556889999999887 5542 12222
Q ss_pred cCCCCcEEEccCCC-CCC--c-ccccCCCCcCEEEccCC-CCC--CCchhhcCCCCCCEEeccC
Q 037969 221 LLANLQTLCLDQSM-LGD--I-AIIGKLKNLEILSFLNS-DIV--RLPGELGQLTKLRLLDLTD 277 (300)
Q Consensus 221 ~l~~L~~L~l~~~~-l~~--p-~~~~~l~~L~~L~l~~~-~l~--~lp~~~~~l~~L~~L~l~~ 277 (300)
..++|++|.+..|. ++. . .....+++|++|++++| .++ .+.....++++|+.|.+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 36789999988777 554 3 44456788999999998 443 2333344455555554443
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=81.67 E-value=0.99 Score=39.98 Aligned_cols=109 Identities=19% Similarity=0.205 Sum_probs=47.9
Q ss_pred cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCc-CCcC--CcccccCCCCcEEEccCCCCCC---c-ccccCC
Q 037969 172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMR-LFSL--PSSIGLLANLQTLCLDQSMLGD---I-AIIGKL 244 (300)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~-~~~l--p~~i~~l~~L~~L~l~~~~l~~---p-~~~~~l 244 (300)
.+..|+.+...++.......-..+..+..+|++|.+.+++ ++.. -.--.+.+.|+.+++.++.... . .--.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 3455555555554332111112222344566666666553 2221 0011234455555655554221 1 222345
Q ss_pred CCcCEEEccCC-CCCCC-----chhhcCCCCCCEEeccCCCC
Q 037969 245 KNLEILSFLNS-DIVRL-----PGELGQLTKLRLLDLTDCLQ 280 (300)
Q Consensus 245 ~~L~~L~l~~~-~l~~l-----p~~~~~l~~L~~L~l~~~~~ 280 (300)
+.||.|.+++| .++.. ..+-..+..|..+.+++|+.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~ 413 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPL 413 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCC
Confidence 55666666655 22211 22223445566666666653
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=78.09 E-value=1.9 Score=21.96 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=7.5
Q ss_pred CCcCEEEccCCCCC
Q 037969 245 KNLEILSFLNSDIV 258 (300)
Q Consensus 245 ~~L~~L~l~~~~l~ 258 (300)
.+|+.|++++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 44555555555554
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=73.48 E-value=1.5 Score=21.52 Aligned_cols=11 Identities=36% Similarity=0.513 Sum_probs=3.8
Q ss_pred CCCEEeccCCC
Q 037969 269 KLRLLDLTDCL 279 (300)
Q Consensus 269 ~L~~L~l~~~~ 279 (300)
+|++|++++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 34444444443
No 87
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=64.96 E-value=6.2 Score=19.76 Aligned_cols=15 Identities=40% Similarity=0.775 Sum_probs=11.2
Q ss_pred CCCCEEeccCCCCcc
Q 037969 268 TKLRLLDLTDCLQLK 282 (300)
Q Consensus 268 ~~L~~L~l~~~~~l~ 282 (300)
++|++|++++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 578888888887554
No 88
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=59.15 E-value=8.6 Score=19.74 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=7.5
Q ss_pred CCcEEEccCCCCC
Q 037969 224 NLQTLCLDQSMLG 236 (300)
Q Consensus 224 ~L~~L~l~~~~l~ 236 (300)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4556666666554
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=45.84 E-value=13 Score=34.50 Aligned_cols=59 Identities=22% Similarity=0.327 Sum_probs=24.7
Q ss_pred CCcccEEEeeCCcCCcC---CcccccCCCCcEEEccCC--CCCC---cccccCCCCcCEEEccCCCCC
Q 037969 199 MKTLRVIDLTRMRLFSL---PSSIGLLANLQTLCLDQS--MLGD---IAIIGKLKNLEILSFLNSDIV 258 (300)
Q Consensus 199 l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~--~l~~---p~~~~~l~~L~~L~l~~~~l~ 258 (300)
.+.+..+.|++|++..+ ..--...++|.+|+|++| .+.. ...++.+ .|++|-+.||.+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCccc
Confidence 33444444555444332 111223445555555555 2222 1222222 2555555555443
No 90
>PF15385 SARG: Specifically androgen-regulated gene protein
Probab=33.10 E-value=24 Score=32.45 Aligned_cols=16 Identities=38% Similarity=0.578 Sum_probs=14.7
Q ss_pred ccccCCchhHHHHHHHh
Q 037969 41 SFKYLKGEQLKKIFLLC 57 (300)
Q Consensus 41 sy~~L~~~~lk~cfl~~ 57 (300)
||++|..+ .|.|++|+
T Consensus 7 Sl~~LS~E-EkecLlFl 22 (497)
T PF15385_consen 7 SLDYLSAE-EKECLLFL 22 (497)
T ss_pred cccccchh-hHHHHHHH
Confidence 89999999 89999985
No 91
>COG3892 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.09 E-value=2.8e+02 Score=23.25 Aligned_cols=80 Identities=16% Similarity=0.209 Sum_probs=53.0
Q ss_pred ChhHHHHHHHHhcCCCCCCCCCCCcccccceeeccccCCchhHHHHHHHhhhcC--CCCCHH-----HHHhhhhhccccc
Q 037969 8 SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQLKKIFLLCSLIG--NSFWFT-----DLFKYSMGLGIFQ 80 (300)
Q Consensus 8 ~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~lk~cfl~~a~fp--~~~~~~-----~Li~~w~aeg~i~ 80 (300)
+.+.|..+-.-+... +.....++-+-.+.-.++ |+.-|.-.+-|| |++-+- +-.+.|.+ |-+.
T Consensus 211 ~~~aW~~i~~~I~~~--------DP~cRGiViLGLdAP~~e-L~~sF~aaa~~piVKGFAVGRTiF~daar~WL~-g~i~ 280 (310)
T COG3892 211 SPDAWAEIEAAIERR--------DPHCRGIVILGLDAPLEE-LEDSFAAAAGFPIVKGFAVGRTIFADAARAWLG-GDID 280 (310)
T ss_pred ChHHHHHHHHHHHhc--------CcccceeEEecccCcHHH-HHHHHHhhcCCCeeeeeecchhhhHHHHHHHHc-CCCC
Confidence 578899998876653 233777888888886676 999999999999 455443 66778876 3333
Q ss_pred CchhHHHHHHHHHHHHH
Q 037969 81 GVNRMVDARNKLYALVH 97 (300)
Q Consensus 81 ~~~~~e~~~~~~~~~~~ 97 (300)
......++...+..+++
T Consensus 281 D~qaia~ma~~f~~L~d 297 (310)
T COG3892 281 DEQAIADMAAKFKQLID 297 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333444444444443
No 92
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=24.40 E-value=4.5 Score=37.22 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=15.5
Q ss_pred CCcCEEEccCCCCC-----CCchhhcCCCCCCEEeccCCC
Q 037969 245 KNLEILSFLNSDIV-----RLPGELGQLTKLRLLDLTDCL 279 (300)
Q Consensus 245 ~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~ 279 (300)
+.+++++++.|.++ .+...+.....++.+.++.|.
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 34455555555443 223333344444455544443
No 93
>PF15641 Tox-MPTase5: Metallopeptidase toxin 5
Probab=21.11 E-value=1.2e+02 Score=20.55 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=22.9
Q ss_pred CHH-HHHhhhhhcccccCchhHHHHHHHHHHHHHH
Q 037969 65 WFT-DLFKYSMGLGIFQGVNRMVDARNKLYALVHE 98 (300)
Q Consensus 65 ~~~-~Li~~w~aeg~i~~~~~~e~~~~~~~~~~~~ 98 (300)
.+. +|-++|.+.|+-.......+.++.+.+.|+.
T Consensus 68 iiheelhhrw~~rgl~~hhp~gs~~~~~fy~~i~r 102 (109)
T PF15641_consen 68 IIHEELHHRWWKRGLNNHHPRGSEMSQRFYEIIRR 102 (109)
T ss_pred HHHHHHHHHHHHhhccccCCCCcchHHHHHHHHHH
Confidence 344 7888999999976544334456666666664
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=20.53 E-value=81 Score=35.58 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=12.3
Q ss_pred ecCCCcccCccc--cCCCccEEecccCcc
Q 037969 160 LNSSIHEVSEEF--ECLQLEFLHISQNTF 186 (300)
Q Consensus 160 ~~~~~~~~~~~~--~~~~L~~L~l~~~~~ 186 (300)
++|.+..++... .+++|+.|+|.+|.+
T Consensus 3 SnN~LstLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 3 SNNKISTIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCcCCccChHHhccCCCceEEEeeCCcc
Confidence 344444444322 444555555554444
Done!