Query 037969
Match_columns 300
No_of_seqs 276 out of 2651
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 10:15:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 4.2E-19 1.4E-23 153.2 18.3 164 135-300 109-284 (328)
2 4fcg_A Uncharacterized protein 99.8 4.1E-19 1.4E-23 153.3 16.3 162 135-300 132-308 (328)
3 3rfs_A Internalin B, repeat mo 99.8 1.4E-18 4.9E-23 145.9 16.7 163 135-300 46-212 (272)
4 3m19_A Variable lymphocyte rec 99.8 3.3E-18 1.1E-22 141.9 16.6 162 135-300 19-186 (251)
5 2o6q_A Variable lymphocyte rec 99.8 5.9E-18 2E-22 142.0 16.9 163 135-300 42-212 (270)
6 2o6q_A Variable lymphocyte rec 99.8 7.8E-18 2.7E-22 141.2 17.3 161 136-300 22-188 (270)
7 4ezg_A Putative uncharacterize 99.8 7.7E-18 2.6E-22 134.6 13.0 144 149-300 41-188 (197)
8 3e6j_A Variable lymphocyte rec 99.8 1.6E-17 5.6E-22 135.9 14.9 139 138-279 27-170 (229)
9 1h6t_A Internalin B; cell adhe 99.8 4.1E-17 1.4E-21 138.3 17.1 157 135-300 51-207 (291)
10 1p9a_G Platelet glycoprotein I 99.7 2.1E-17 7.3E-22 140.0 15.2 147 149-300 52-202 (290)
11 1ozn_A Reticulon 4 receptor; N 99.7 3.1E-17 1.1E-21 138.6 15.8 162 136-300 38-208 (285)
12 1h6u_A Internalin H; cell adhe 99.7 6.1E-17 2.1E-21 138.4 17.4 156 136-300 69-224 (308)
13 1p9a_G Platelet glycoprotein I 99.7 3.3E-17 1.1E-21 138.8 14.9 157 138-300 18-179 (290)
14 3rfs_A Internalin B, repeat mo 99.7 4.2E-17 1.4E-21 136.9 14.9 148 148-300 37-188 (272)
15 1ozn_A Reticulon 4 receptor; N 99.7 5.8E-17 2E-21 136.9 15.6 149 149-300 77-232 (285)
16 2v9t_B SLIT homolog 2 protein 99.7 3.5E-17 1.2E-21 133.1 13.6 141 136-279 17-163 (220)
17 1h6u_A Internalin H; cell adhe 99.7 1.1E-16 3.8E-21 136.8 16.9 157 135-300 46-202 (308)
18 2v70_A SLIT-2, SLIT homolog 2 99.7 5.1E-17 1.8E-21 132.1 14.2 141 136-279 17-164 (220)
19 1xeu_A Internalin C; cellular 99.7 5.3E-17 1.8E-21 135.6 14.1 143 148-300 37-179 (263)
20 1h6t_A Internalin B; cell adhe 99.7 8.6E-17 2.9E-21 136.4 14.5 143 149-300 43-185 (291)
21 2xwt_C Thyrotropin receptor; s 99.7 3.8E-17 1.3E-21 134.5 11.9 162 136-300 37-212 (239)
22 3m19_A Variable lymphocyte rec 99.7 1E-16 3.5E-21 133.0 14.5 144 153-300 15-162 (251)
23 1m9s_A Internalin B; cell inva 99.7 2.3E-16 7.7E-21 146.4 16.6 155 137-300 50-204 (605)
24 2o6s_A Variable lymphocyte rec 99.7 3.2E-16 1.1E-20 126.1 15.1 144 137-283 14-163 (208)
25 2xot_A Amphoterin-induced prot 99.7 1.2E-16 3.9E-21 139.7 13.3 161 135-299 23-195 (361)
26 2z62_A TOLL-like receptor 4, v 99.7 1.9E-16 6.6E-21 133.1 13.6 152 141-296 18-176 (276)
27 4g8a_A TOLL-like receptor 4; l 99.7 1E-16 3.6E-21 149.6 13.1 155 138-296 39-200 (635)
28 3e6j_A Variable lymphocyte rec 99.7 4.2E-16 1.4E-20 127.5 14.6 143 154-300 21-166 (229)
29 3zyi_A Leucine-rich repeat-con 99.7 2.6E-16 9E-21 141.6 14.5 36 151-186 122-159 (452)
30 3vq2_A TLR4, TOLL-like recepto 99.7 1.7E-16 5.7E-21 147.9 13.2 158 135-296 16-180 (606)
31 3zyj_A Leucine-rich repeat-con 99.7 2.8E-16 9.7E-21 140.8 14.2 36 151-186 111-148 (440)
32 2v9t_B SLIT homolog 2 protein 99.7 5E-16 1.7E-20 126.2 14.2 142 155-300 14-159 (220)
33 2z62_A TOLL-like receptor 4, v 99.7 2E-16 6.9E-21 133.0 12.0 149 149-300 73-231 (276)
34 1ogq_A PGIP-2, polygalacturona 99.7 2.8E-16 9.6E-21 134.6 13.0 97 201-299 175-274 (313)
35 2o6s_A Variable lymphocyte rec 99.7 9.6E-16 3.3E-20 123.3 15.4 141 156-300 11-155 (208)
36 2xwt_C Thyrotropin receptor; s 99.7 1.4E-16 4.7E-21 131.1 10.6 153 142-300 23-186 (239)
37 1ogq_A PGIP-2, polygalacturona 99.7 2.2E-16 7.4E-21 135.3 12.1 148 149-300 73-228 (313)
38 3zyj_A Leucine-rich repeat-con 99.7 5.4E-16 1.8E-20 139.0 15.0 163 135-300 117-286 (440)
39 2v70_A SLIT-2, SLIT homolog 2 99.7 7.7E-16 2.6E-20 125.1 14.5 142 155-300 14-160 (220)
40 2z80_A TOLL-like receptor 2, v 99.7 1.5E-16 5E-21 138.6 10.6 148 149-299 73-228 (353)
41 2z66_A Variable lymphocyte rec 99.7 1.8E-16 6.1E-21 135.2 10.9 162 136-300 84-255 (306)
42 2ell_A Acidic leucine-rich nuc 99.7 2.7E-16 9.1E-21 122.3 10.8 131 151-286 23-164 (168)
43 3zyi_A Leucine-rich repeat-con 99.7 7.1E-16 2.4E-20 138.7 15.1 163 135-300 128-297 (452)
44 3o6n_A APL1; leucine-rich repe 99.7 9.8E-16 3.4E-20 135.1 15.7 87 149-237 90-179 (390)
45 2z80_A TOLL-like receptor 2, v 99.7 1.1E-16 3.9E-21 139.3 9.4 161 136-300 37-205 (353)
46 1m9s_A Internalin B; cell inva 99.7 5.1E-16 1.7E-20 144.0 14.2 144 148-300 39-182 (605)
47 2z66_A Variable lymphocyte rec 99.7 3.2E-16 1.1E-20 133.7 11.8 130 149-279 123-259 (306)
48 2id5_A Lingo-1, leucine rich r 99.7 6.3E-16 2.2E-20 139.9 14.4 146 151-299 55-206 (477)
49 3oja_B Anopheles plasmodium-re 99.7 8.4E-16 2.9E-20 143.0 15.4 87 149-237 96-185 (597)
50 3rgz_A Protein brassinosteroid 99.7 1.1E-15 3.8E-20 146.1 16.7 149 149-300 487-711 (768)
51 4ezg_A Putative uncharacterize 99.7 8.2E-16 2.8E-20 122.7 13.2 141 135-279 49-192 (197)
52 3o6n_A APL1; leucine-rich repe 99.7 9.7E-16 3.3E-20 135.2 14.9 80 219-300 244-325 (390)
53 4fmz_A Internalin; leucine ric 99.7 2.9E-15 9.9E-20 129.9 17.5 154 136-298 50-204 (347)
54 4fmz_A Internalin; leucine ric 99.7 3.7E-15 1.3E-19 129.3 17.6 125 149-279 174-298 (347)
55 2z63_A TOLL-like receptor 4, v 99.7 7.5E-16 2.6E-20 142.3 13.9 155 137-295 14-175 (570)
56 2id5_A Lingo-1, leucine rich r 99.7 7.1E-16 2.4E-20 139.6 13.4 156 140-299 21-182 (477)
57 3oja_B Anopheles plasmodium-re 99.7 1.1E-15 3.9E-20 142.1 14.8 80 219-300 250-331 (597)
58 2ell_A Acidic leucine-rich nuc 99.7 8.4E-16 2.9E-20 119.4 11.7 126 172-300 22-154 (168)
59 1xku_A Decorin; proteoglycan, 99.7 2.2E-15 7.4E-20 129.9 15.5 86 200-286 192-280 (330)
60 2z7x_B TOLL-like receptor 1, v 99.7 2.5E-15 8.4E-20 137.5 16.7 161 135-300 307-475 (520)
61 2je0_A Acidic leucine-rich nuc 99.7 3.7E-16 1.3E-20 119.0 9.1 122 175-299 18-146 (149)
62 3o53_A Protein LRIM1, AGAP0063 99.6 7.6E-16 2.6E-20 132.1 11.4 144 152-300 99-244 (317)
63 4ecn_A Leucine-rich repeat pro 99.6 3.8E-16 1.3E-20 149.9 10.2 147 150-300 489-651 (876)
64 1ziw_A TOLL-like receptor 3; i 99.6 3.7E-15 1.3E-19 140.7 16.5 160 137-300 11-178 (680)
65 3v47_A TOLL-like receptor 5B a 99.6 1.5E-15 5.1E-20 136.6 13.2 153 136-292 16-177 (455)
66 4eco_A Uncharacterized protein 99.6 4E-15 1.4E-19 139.3 16.4 125 173-300 432-573 (636)
67 3oja_A Leucine-rich immune mol 99.6 9.9E-16 3.4E-20 139.0 11.8 144 152-300 99-244 (487)
68 3t6q_A CD180 antigen; protein- 99.6 3.1E-15 1.1E-19 139.3 15.4 159 137-299 19-185 (606)
69 1xku_A Decorin; proteoglycan, 99.6 7.7E-15 2.6E-19 126.5 16.7 159 137-300 107-270 (330)
70 2z81_A CD282 antigen, TOLL-lik 99.6 7.1E-16 2.4E-20 141.9 10.6 155 140-298 15-177 (549)
71 2ft3_A Biglycan; proteoglycan, 99.6 3.5E-15 1.2E-19 128.8 14.1 156 138-299 110-270 (332)
72 4ecn_A Leucine-rich repeat pro 99.6 7.2E-15 2.5E-19 141.1 17.4 124 174-300 673-813 (876)
73 3rgz_A Protein brassinosteroid 99.6 3E-15 1E-19 143.2 14.7 147 151-300 393-545 (768)
74 2xot_A Amphoterin-induced prot 99.6 2.5E-15 8.4E-20 131.3 12.6 142 155-300 21-170 (361)
75 1a9n_A U2A', U2A'; complex (nu 99.6 1.6E-15 5.6E-20 118.8 10.2 127 149-279 16-151 (176)
76 4eco_A Uncharacterized protein 99.6 3.3E-15 1.1E-19 139.9 13.8 144 151-300 432-594 (636)
77 3vq2_A TLR4, TOLL-like recepto 99.6 3.7E-15 1.3E-19 138.8 14.1 143 154-300 13-160 (606)
78 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 9.2E-15 3.1E-19 135.0 16.6 161 135-300 336-504 (562)
79 1xeu_A Internalin C; cellular 99.6 7.4E-16 2.5E-20 128.7 8.2 141 150-300 17-157 (263)
80 1o6v_A Internalin A; bacterial 99.6 1.6E-14 5.3E-19 130.5 17.3 76 220-299 306-381 (466)
81 2z81_A CD282 antigen, TOLL-lik 99.6 7E-15 2.4E-19 135.3 15.1 162 135-300 315-504 (549)
82 2je0_A Acidic leucine-rich nuc 99.6 1.4E-15 4.8E-20 115.7 8.7 123 151-277 16-149 (149)
83 4g8a_A TOLL-like receptor 4; l 99.6 3.8E-15 1.3E-19 139.1 13.4 140 156-300 35-180 (635)
84 1a9n_A U2A', U2A'; complex (nu 99.6 1.6E-15 5.4E-20 118.9 8.7 129 167-300 12-147 (176)
85 3v47_A TOLL-like receptor 5B a 99.6 1.9E-15 6.4E-20 135.9 10.0 124 174-300 275-402 (455)
86 1o6v_A Internalin A; bacterial 99.6 2.8E-14 9.5E-19 128.8 17.6 157 135-300 204-360 (466)
87 3o53_A Protein LRIM1, AGAP0063 99.6 8.2E-16 2.8E-20 131.9 7.0 146 150-299 118-268 (317)
88 3j0a_A TOLL-like receptor 5; m 99.6 5.7E-15 1.9E-19 142.7 13.5 161 135-299 9-180 (844)
89 2wfh_A SLIT homolog 2 protein 99.6 9.8E-15 3.3E-19 116.1 12.6 121 155-279 13-137 (193)
90 2ft3_A Biglycan; proteoglycan, 99.6 1.5E-14 5.1E-19 124.8 14.5 146 149-300 75-248 (332)
91 4glp_A Monocyte differentiatio 99.6 1.9E-15 6.6E-20 129.2 8.2 144 151-300 144-301 (310)
92 4b8c_D Glucose-repressible alc 99.6 3.3E-15 1.1E-19 141.6 10.6 112 172-286 222-334 (727)
93 2wfh_A SLIT homolog 2 protein 99.6 1.9E-14 6.4E-19 114.4 13.2 121 135-258 15-139 (193)
94 3cvr_A Invasion plasmid antige 99.6 1.9E-14 6.6E-19 132.2 15.1 146 134-300 84-237 (571)
95 3bz5_A Internalin-J, INLJ; leu 99.6 1.8E-14 6.1E-19 129.6 14.4 151 135-300 47-198 (457)
96 1wwl_A Monocyte differentiatio 99.6 1.1E-14 3.8E-19 124.6 12.5 146 149-300 118-281 (312)
97 1wwl_A Monocyte differentiatio 99.6 5.6E-15 1.9E-19 126.4 10.4 143 152-300 149-303 (312)
98 1dce_A Protein (RAB geranylger 99.6 1E-14 3.6E-19 134.4 12.9 121 175-300 442-567 (567)
99 1ziw_A TOLL-like receptor 3; i 99.6 2E-14 6.7E-19 135.7 15.0 162 135-299 30-201 (680)
100 1w8a_A SLIT protein; signaling 99.6 1.5E-14 5E-19 114.9 11.8 123 155-280 11-138 (192)
101 2z7x_B TOLL-like receptor 1, v 99.6 1.1E-14 3.7E-19 133.2 12.6 148 137-292 7-163 (520)
102 1w8a_A SLIT protein; signaling 99.6 1E-14 3.4E-19 115.9 10.6 118 177-300 11-133 (192)
103 2z63_A TOLL-like receptor 4, v 99.6 6E-15 2E-19 136.3 10.3 146 152-300 373-525 (570)
104 2o6r_A Variable lymphocyte rec 99.6 4.1E-14 1.4E-18 110.8 13.1 127 154-283 9-139 (177)
105 3oja_A Leucine-rich immune mol 99.6 7.3E-15 2.5E-19 133.3 10.0 139 151-300 79-221 (487)
106 4b8c_D Glucose-repressible alc 99.6 5.2E-15 1.8E-19 140.3 9.2 106 150-258 222-329 (727)
107 4glp_A Monocyte differentiatio 99.6 1.4E-14 4.7E-19 123.8 10.8 146 149-300 114-279 (310)
108 3t6q_A CD180 antigen; protein- 99.6 3.7E-14 1.3E-18 132.0 13.8 102 197-299 347-455 (606)
109 3bz5_A Internalin-J, INLJ; leu 99.6 1.1E-13 3.8E-18 124.4 16.4 151 135-300 69-219 (457)
110 1ds9_A Outer arm dynein; leuci 99.5 5.7E-16 2E-20 123.7 0.2 142 154-299 25-180 (198)
111 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 4.7E-14 1.6E-18 130.3 12.6 136 137-279 38-180 (562)
112 2a5y_B CED-4; apoptosis; HET: 99.5 1E-15 3.5E-20 140.8 1.3 94 32-132 361-472 (549)
113 3j0a_A TOLL-like receptor 5; m 99.5 5.2E-14 1.8E-18 136.0 12.0 142 155-300 7-155 (844)
114 3g06_A SSPH2 (leucine-rich rep 99.5 3.6E-13 1.2E-17 125.1 16.6 71 223-300 221-291 (622)
115 4ay9_X Follicle-stimulating ho 99.5 7.5E-14 2.6E-18 121.3 11.1 160 138-299 17-208 (350)
116 2o6r_A Variable lymphocyte rec 99.5 3.1E-13 1E-17 105.8 12.9 119 176-300 9-131 (177)
117 1jl5_A Outer protein YOPM; leu 99.5 5E-13 1.7E-17 120.1 15.5 122 153-286 132-254 (454)
118 3cvr_A Invasion plasmid antige 99.5 1.6E-13 5.5E-18 126.1 12.2 142 135-293 105-254 (571)
119 1dce_A Protein (RAB geranylger 99.5 1.8E-13 6.2E-18 126.1 11.8 119 153-275 442-567 (567)
120 2ast_B S-phase kinase-associat 99.5 4.8E-14 1.7E-18 121.6 6.4 149 150-300 116-279 (336)
121 1jl5_A Outer protein YOPM; leu 99.5 1.6E-12 5.3E-17 116.9 16.1 149 135-300 96-244 (454)
122 3g06_A SSPH2 (leucine-rich rep 99.5 1.4E-12 4.8E-17 121.2 16.2 90 135-237 66-155 (622)
123 2ast_B S-phase kinase-associat 99.4 1.3E-13 4.4E-18 118.9 7.8 149 149-300 90-254 (336)
124 2r9u_A Variable lymphocyte rec 99.4 7.5E-13 2.6E-17 103.3 9.7 105 155-262 15-122 (174)
125 2r9u_A Variable lymphocyte rec 99.4 1.6E-12 5.6E-17 101.4 10.0 105 176-286 14-122 (174)
126 3g39_A Variable lymphocyte rec 99.4 2.4E-12 8.4E-17 100.0 10.8 101 155-258 12-115 (170)
127 2ca6_A RAN GTPase-activating p 99.4 3.2E-13 1.1E-17 118.9 6.2 151 149-300 119-310 (386)
128 3g39_A Variable lymphocyte rec 99.4 2.3E-12 7.8E-17 100.2 10.4 105 175-285 10-118 (170)
129 4ay9_X Follicle-stimulating ho 99.4 3E-12 1E-16 111.1 12.0 158 137-300 87-253 (350)
130 2ca6_A RAN GTPase-activating p 99.4 8.7E-13 3E-17 116.1 7.7 147 150-300 92-281 (386)
131 1ds9_A Outer arm dynein; leuci 99.4 2.1E-14 7E-19 114.6 -2.8 108 189-300 38-147 (198)
132 3goz_A Leucine-rich repeat-con 99.3 3.6E-12 1.2E-16 111.2 8.0 147 150-300 48-232 (362)
133 3goz_A Leucine-rich repeat-con 99.3 5.2E-12 1.8E-16 110.2 7.3 79 201-279 168-264 (362)
134 1z7x_W Ribonuclease inhibitor; 99.2 8.4E-12 2.9E-16 112.2 4.5 145 151-300 55-234 (461)
135 1z7x_W Ribonuclease inhibitor; 99.2 1E-11 3.5E-16 111.6 3.1 76 223-300 313-405 (461)
136 1vt4_I APAF-1 related killer D 99.1 6.7E-12 2.3E-16 119.9 1.5 98 1-124 334-436 (1221)
137 3sfz_A APAF-1, apoptotic pepti 99.1 2.4E-11 8.4E-16 121.7 4.4 116 2-131 329-452 (1249)
138 2ifg_A High affinity nerve gro 99.1 2.1E-10 7.2E-15 99.3 9.3 101 178-283 12-117 (347)
139 2ifg_A High affinity nerve gro 99.1 2.6E-10 8.9E-15 98.7 9.4 103 156-260 12-118 (347)
140 3sb4_A Hypothetical leucine ri 99.0 1.2E-09 4.1E-14 93.9 9.4 98 199-299 225-327 (329)
141 3ogk_B Coronatine-insensitive 99.0 5.2E-10 1.8E-14 103.6 7.4 148 150-299 162-324 (592)
142 3sb4_A Hypothetical leucine ri 99.0 1.2E-09 4E-14 93.9 8.5 75 222-299 225-303 (329)
143 3un9_A NLR family member X1; l 98.9 3.2E-10 1.1E-14 99.1 2.3 129 152-283 101-253 (372)
144 3un9_A NLR family member X1; l 98.8 6.6E-10 2.3E-14 97.1 1.6 105 174-279 101-222 (372)
145 3ogk_B Coronatine-insensitive 98.8 5.4E-09 1.8E-13 96.8 7.2 124 149-276 189-350 (592)
146 2p1m_B Transport inhibitor res 98.8 5.5E-09 1.9E-13 96.7 6.3 148 150-298 103-270 (594)
147 2p1m_B Transport inhibitor res 98.7 4.2E-09 1.4E-13 97.5 1.7 56 243-299 287-344 (594)
148 1z6t_A APAF-1, apoptotic prote 98.6 2.8E-08 9.4E-13 92.2 6.2 105 10-127 336-448 (591)
149 2ra8_A Uncharacterized protein 98.4 3.4E-07 1.2E-11 79.4 7.1 58 222-279 251-318 (362)
150 4fdw_A Leucine rich hypothetic 98.4 1.8E-06 6.1E-11 76.0 10.6 140 151-298 179-328 (401)
151 2ra8_A Uncharacterized protein 98.4 5.5E-07 1.9E-11 78.1 6.5 145 149-300 136-314 (362)
152 3e4g_A ATP synthase subunit S, 98.3 6.4E-07 2.2E-11 69.0 5.2 83 200-283 61-154 (176)
153 3rw6_A Nuclear RNA export fact 98.3 9.9E-07 3.4E-11 72.9 6.2 78 197-274 167-257 (267)
154 1io0_A Tropomodulin; LRR prote 98.3 9.4E-07 3.2E-11 69.2 5.2 107 172-279 34-162 (185)
155 3rw6_A Nuclear RNA export fact 98.2 2.7E-06 9.2E-11 70.3 7.0 79 220-299 167-257 (267)
156 1io0_A Tropomodulin; LRR prote 98.2 1.5E-06 5.2E-11 67.9 5.1 103 196-300 32-158 (185)
157 3e4g_A ATP synthase subunit S, 98.2 1.4E-06 4.7E-11 67.1 4.5 78 223-300 61-146 (176)
158 4fdw_A Leucine rich hypothetic 98.2 9.4E-06 3.2E-10 71.4 10.1 120 175-300 158-307 (401)
159 4h09_A Hypothetical leucine ri 96.8 0.012 4.1E-07 50.9 11.4 83 191-275 254-340 (379)
160 4fs7_A Uncharacterized protein 96.5 0.019 6.4E-07 50.0 10.4 56 240-298 315-371 (394)
161 4h09_A Hypothetical leucine ri 96.2 0.031 1E-06 48.3 10.4 122 172-300 215-340 (379)
162 3rfe_A Platelet glycoprotein I 96.2 0.01 3.5E-07 43.0 5.8 54 178-236 12-68 (130)
163 3rfe_A Platelet glycoprotein I 96.1 0.013 4.4E-07 42.5 6.0 55 156-213 12-68 (130)
164 4fs7_A Uncharacterized protein 96.0 0.016 5.4E-07 50.5 7.5 54 151-208 70-125 (394)
165 4gt6_A Cell surface protein; l 96.0 0.025 8.5E-07 49.2 8.5 118 172-299 263-384 (394)
166 4gt6_A Cell surface protein; l 95.4 0.049 1.7E-06 47.3 8.2 105 191-300 256-364 (394)
167 1pgv_A TMD-1, tropomodulin TMD 95.2 0.024 8.2E-07 44.2 5.0 105 172-279 39-168 (197)
168 1pgv_A TMD-1, tropomodulin TMD 94.8 0.033 1.1E-06 43.4 4.7 102 152-256 41-168 (197)
169 2lz0_A Uncharacterized protein 20.0 1.1E+02 0.0036 20.3 3.5 35 172-209 18-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=4.2e-19 Score=153.17 Aligned_cols=164 Identities=24% Similarity=0.352 Sum_probs=124.0
Q ss_pred EEEeccccccCCC-ccccCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhH--------HhcCCcccE
Q 037969 135 FLVRNEVVWEWPD-EDALKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNI--------FKGMKTLRV 204 (300)
Q Consensus 135 ~~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~--------~~~l~~L~~ 204 (300)
..+.++.+..+|. ...+++++.|++++|.+..+|..+ .+++|++|++++|... +.+|..+ +.++++|++
T Consensus 109 L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~-~~~p~~~~~~~~~~~~~~l~~L~~ 187 (328)
T 4fcg_A 109 MTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPEL-TELPEPLASTDASGEHQGLVNLQS 187 (328)
T ss_dssp EEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTC-CCCCSCSEEEC-CCCEEESTTCCE
T ss_pred EECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCc-cccChhHhhccchhhhccCCCCCE
Confidence 4445555555554 356777888888888777777655 7778888888776552 5666654 124788888
Q ss_pred EEeeCCcCCcCCcccccCCCCcEEEccCCCCCC-cccccCCCCcCEEEccCCCCC-CCchhhcCCCCCCEEeccCCCCcc
Q 037969 205 IDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIV-RLPGELGQLTKLRLLDLTDCLQLK 282 (300)
Q Consensus 205 L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~ 282 (300)
|++++|.++.+|..++.+++|++|++++|.+.. |+.++.+++|++|++++|++. .+|..++.+++|++|++++|...+
T Consensus 188 L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 267 (328)
T 4fcg_A 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267 (328)
T ss_dssp EEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC
T ss_pred EECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh
Confidence 888888888888888888888888888888887 777888888888888887544 777788888888888888888788
Q ss_pred ccchhhhcCCCCCCeeeC
Q 037969 283 FIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 283 ~lp~~~l~~L~~L~~L~l 300 (300)
.+|.. ++.+++|++|++
T Consensus 268 ~~p~~-~~~l~~L~~L~L 284 (328)
T 4fcg_A 268 TLPLD-IHRLTQLEKLDL 284 (328)
T ss_dssp BCCTT-GGGCTTCCEEEC
T ss_pred hcchh-hhcCCCCCEEeC
Confidence 88876 788888888875
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=4.1e-19 Score=153.28 Aligned_cols=162 Identities=19% Similarity=0.304 Sum_probs=129.2
Q ss_pred EEEeccccccCCCc-cccCCccEEEeecCCC-cccCccc----------cCCCccEEecccCccccccCchhHHhcCCcc
Q 037969 135 FLVRNEVVWEWPDE-DALKKCSAISLLNSSI-HEVSEEF----------ECLQLEFLHISQNTFVEVNIPDNIFKGMKTL 202 (300)
Q Consensus 135 ~~~~~~~~~~~~~~-~~~~~l~~L~l~~~~~-~~~~~~~----------~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L 202 (300)
..+.++.+..+|.. ..+++++.|++++|.. ..+|..+ .+++|+.|++.+|.+ ..+|..+ ..+++|
T Consensus 132 L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l--~~lp~~l-~~l~~L 208 (328)
T 4fcg_A 132 LTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI--RSLPASI-ANLQNL 208 (328)
T ss_dssp EEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC--CCCCGGG-GGCTTC
T ss_pred EECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc--CcchHhh-cCCCCC
Confidence 44555556666643 6678888888888655 6666654 388899999988888 6888775 788889
Q ss_pred cEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCC-CCCCchhhcCCCCCCEEeccCCC
Q 037969 203 RVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSD-IVRLPGELGQLTKLRLLDLTDCL 279 (300)
Q Consensus 203 ~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~ 279 (300)
++|++++|.++.+|+.++.+++|++|++++|.+.. |..++.+++|++|++++|+ +..+|..++++++|++|++++|.
T Consensus 209 ~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 209 KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 99999998888888888888889999998887665 6778888889999998884 45788888888999999999888
Q ss_pred CccccchhhhcCCCCCCeeeC
Q 037969 280 QLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 280 ~l~~lp~~~l~~L~~L~~L~l 300 (300)
..+.+|.. ++++++|+.+++
T Consensus 289 ~~~~iP~~-l~~L~~L~~l~l 308 (328)
T 4fcg_A 289 NLSRLPSL-IAQLPANCIILV 308 (328)
T ss_dssp TCCCCCGG-GGGSCTTCEEEC
T ss_pred chhhccHH-HhhccCceEEeC
Confidence 88888887 888888888754
No 3
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.80 E-value=1.4e-18 Score=145.91 Aligned_cols=163 Identities=25% Similarity=0.375 Sum_probs=139.3
Q ss_pred EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969 135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 214 (300)
....+..+..++....+++++.|++++|.+..++....+++|++|++.+|.+ ..++...+..+++|++|++++|.++.
T Consensus 46 L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~ 123 (272)
T 3rfs_A 46 IIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQL--QSLPNGVFDKLTNLKELVLVENQLQS 123 (272)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCC
T ss_pred eeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCcc--CccChhHhcCCcCCCEEECCCCcCCc
Confidence 3455555666677778899999999999998777666999999999999999 78888777899999999999999998
Q ss_pred CCcc-cccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhc
Q 037969 215 LPSS-IGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLS 290 (300)
Q Consensus 215 lp~~-i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~ 290 (300)
+|.. ++.+++|++|++++|.+.. + ..++.+++|++|++++|.++.+|.. ++.+++|++|++++|. +..+|+..++
T Consensus 124 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~ 202 (272)
T 3rfs_A 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFD 202 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTT
T ss_pred cCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHh
Confidence 7654 7899999999999999888 4 4578999999999999999988765 5889999999999998 6777776688
Q ss_pred CCCCCCeeeC
Q 037969 291 SFTRLEELYM 300 (300)
Q Consensus 291 ~L~~L~~L~l 300 (300)
.+++|++|++
T Consensus 203 ~l~~L~~L~l 212 (272)
T 3rfs_A 203 RLTSLQYIWL 212 (272)
T ss_dssp TCTTCCEEEC
T ss_pred CCcCCCEEEc
Confidence 9999999875
No 4
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=3.3e-18 Score=141.95 Aligned_cols=162 Identities=19% Similarity=0.347 Sum_probs=135.8
Q ss_pred EEEeccccccCCCccccCCccEEEeecCCCcccCcc-c-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcC
Q 037969 135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRL 212 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 212 (300)
....+..+..+|.. ..++++.|++++|.+..++.. + .+++|+.|++++|.+ ..++...+..+++|++|++++|.+
T Consensus 19 l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 19 VDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL--QTLSAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp EECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcC--CccCHhHhccCCcCCEEECCCCcc
Confidence 34455556666653 346899999999999766543 3 899999999999999 777777678999999999999999
Q ss_pred CcCC-cccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCccccchhh
Q 037969 213 FSLP-SSIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCLQLKFIVPNV 288 (300)
Q Consensus 213 ~~lp-~~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~ 288 (300)
+.+| ..++.+++|++|++++|.+.. + ..+..+++|++|++++|.++.+|. .++.+++|++|++++|. +..+|...
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~ 174 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGA 174 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT
T ss_pred cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHH
Confidence 9975 457899999999999999988 4 446889999999999999998887 58899999999999998 77888766
Q ss_pred hcCCCCCCeeeC
Q 037969 289 LSSFTRLEELYM 300 (300)
Q Consensus 289 l~~L~~L~~L~l 300 (300)
+..+++|++|++
T Consensus 175 ~~~l~~L~~L~l 186 (251)
T 3m19_A 175 FDRLGKLQTITL 186 (251)
T ss_dssp TTTCTTCCEEEC
T ss_pred HhCCCCCCEEEe
Confidence 889999999875
No 5
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=5.9e-18 Score=141.98 Aligned_cols=163 Identities=25% Similarity=0.373 Sum_probs=121.7
Q ss_pred EEEeccccccCCC--ccccCCccEEEeecCCCcccCccc--cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC
Q 037969 135 FLVRNEVVWEWPD--EDALKKCSAISLLNSSIHEVSEEF--ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210 (300)
Q Consensus 135 ~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~ 210 (300)
..+.+..+..++. ...+++++.|++++|.+..++... .+++|++|++++|.+ ..+|...|..+++|++|++++|
T Consensus 42 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL--QALPIGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp EECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC--CCCCTTTTTTCSSCCEEECCSS
T ss_pred EECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC--CcCCHhHcccccCCCEEECCCC
Confidence 3344444555543 255677888888888877666543 678888888888887 7777766677888888888888
Q ss_pred cCCcCC-cccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccch
Q 037969 211 RLFSLP-SSIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVP 286 (300)
Q Consensus 211 ~~~~lp-~~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~ 286 (300)
.++.+| ..++.+++|++|++++|.+.. | ..++.+++|++|++++|.++.+|.. +.++++|++|++++|. +..+|.
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~ 198 (270)
T 2o6q_A 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPE 198 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCH
Confidence 888764 446788888888888888777 4 4477888888888888888877764 6778888888888887 677777
Q ss_pred hhhcCCCCCCeeeC
Q 037969 287 NVLSSFTRLEELYM 300 (300)
Q Consensus 287 ~~l~~L~~L~~L~l 300 (300)
..+..+++|+.|++
T Consensus 199 ~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 199 GAFDSLEKLKMLQL 212 (270)
T ss_dssp TTTTTCTTCCEEEC
T ss_pred HHhccccCCCEEEe
Confidence 66778888888765
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=7.8e-18 Score=141.23 Aligned_cols=161 Identities=24% Similarity=0.369 Sum_probs=132.4
Q ss_pred EEeccccccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC
Q 037969 136 LVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF 213 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 213 (300)
...+..+..+|. ...++++.|+++++.+..++. .+ .+++|++|++.+|.+ ..+|..+|..+++|++|++++|.++
T Consensus 22 ~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~i~~~~~~~l~~L~~L~l~~n~l~ 98 (270)
T 2o6q_A 22 DCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL--QTLPAGIFKELKNLETLWVTDNKLQ 98 (270)
T ss_dssp ECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC--SCCCTTTTSSCTTCCEEECCSSCCC
T ss_pred EccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc--CeeChhhhcCCCCCCEEECCCCcCC
Confidence 344455666665 334678999999999977775 33 889999999999998 7888887788999999999999999
Q ss_pred cCCc-ccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhh
Q 037969 214 SLPS-SIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVL 289 (300)
Q Consensus 214 ~lp~-~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l 289 (300)
.+|. .+..+++|++|++++|.+.. +..++.+++|++|++++|.++.+|.. ++.+++|++|++++|. +..+|...+
T Consensus 99 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 177 (270)
T 2o6q_A 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAF 177 (270)
T ss_dssp CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT
T ss_pred cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHh
Confidence 8764 46889999999999999887 45678999999999999999988876 7889999999999998 777877668
Q ss_pred cCCCCCCeeeC
Q 037969 290 SSFTRLEELYM 300 (300)
Q Consensus 290 ~~L~~L~~L~l 300 (300)
..+++|++|++
T Consensus 178 ~~l~~L~~L~L 188 (270)
T 2o6q_A 178 DKLTELKTLKL 188 (270)
T ss_dssp TTCTTCCEEEC
T ss_pred ccCCCcCEEEC
Confidence 88999998875
No 7
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=7.7e-18 Score=134.57 Aligned_cols=144 Identities=17% Similarity=0.226 Sum_probs=126.0
Q ss_pred cccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcccccCCCCcE
Q 037969 149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQT 227 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~ 227 (300)
..+++++.|+++++.+..+|....+++|+.|++.+|.+ ..++ . +..+++|++|++++|.++. .|..++.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~--~~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHA--TNYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCC--SCCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCC--Ccch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45678999999999998888656999999999999977 5555 3 4789999999999999987 6788999999999
Q ss_pred EEccCCCCCC--cccccCCCCcCEEEccCCC-CCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 228 LCLDQSMLGD--IAIIGKLKNLEILSFLNSD-IVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 228 L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~-l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
|++++|.+.. |..++.+++|++|++++|. ++.+| .+..+++|++|++++|. +..++. +..+++|++|++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~-i~~~~~--l~~l~~L~~L~l 188 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG-VHDYRG--IEDFPKLNQLYA 188 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC-CCCCTT--GGGCSSCCEEEE
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC-CcChHH--hccCCCCCEEEe
Confidence 9999999986 7889999999999999997 88887 68999999999999998 777773 889999999874
No 8
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.6e-17 Score=135.88 Aligned_cols=139 Identities=22% Similarity=0.300 Sum_probs=100.9
Q ss_pred eccccccCCCccccCCccEEEeecCCCcccC-ccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC
Q 037969 138 RNEVVWEWPDEDALKKCSAISLLNSSIHEVS-EEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL 215 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l 215 (300)
.+..+..+|. ...++++.|++++|.+..++ ..+ .+++|+.|++++|.+ ..+|...|..+++|++|++++|.++.+
T Consensus 27 ~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l--~~i~~~~~~~l~~L~~L~Ls~N~l~~l 103 (229)
T 3e6j_A 27 RSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL--GALPVGVFDSLTQLTVLDLGTNQLTVL 103 (229)
T ss_dssp TTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred cCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC--CCcChhhcccCCCcCEEECCCCcCCcc
Confidence 3444555554 33467788888888775553 333 777888888888887 777776667778888888888888776
Q ss_pred Ccc-cccCCCCcEEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCC
Q 037969 216 PSS-IGLLANLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCL 279 (300)
Q Consensus 216 p~~-i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 279 (300)
|.. +..+++|++|++++|.+.. |..+..+++|++|++++|.++.+|.. +..+++|+.|++++|+
T Consensus 104 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 104 PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred ChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 544 5777888888888888777 77777788888888888877777643 6777788888888776
No 9
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=4.1e-17 Score=138.31 Aligned_cols=157 Identities=20% Similarity=0.322 Sum_probs=134.9
Q ss_pred EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969 135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 214 (300)
..+.+..+..++....+++++.|++++|.+..++....+++|+.|++++|.+ ..++. +..+++|++|++++|.++.
T Consensus 51 L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l--~~~~~--l~~l~~L~~L~L~~n~i~~ 126 (291)
T 1h6t_A 51 IIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV--KDLSS--LKDLKKLKSLSLEHNGISD 126 (291)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCGGG--GTTCTTCCEEECTTSCCCC
T ss_pred EEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcC--CCChh--hccCCCCCEEECCCCcCCC
Confidence 4455556666666677889999999999998777755899999999999998 77665 5889999999999999998
Q ss_pred CCcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCC
Q 037969 215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR 294 (300)
Q Consensus 215 lp~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~ 294 (300)
++ .++.+++|++|++++|.+...+.++.+++|++|++++|.++.++. +..+++|++|++++|. +..+|. +..+++
T Consensus 127 ~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~-i~~l~~--l~~l~~ 201 (291)
T 1h6t_A 127 IN-GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRA--LAGLKN 201 (291)
T ss_dssp CG-GGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGG--GTTCTT
T ss_pred Ch-hhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCc-CCCChh--hccCCC
Confidence 74 588999999999999998887788999999999999999998876 8999999999999998 777875 889999
Q ss_pred CCeeeC
Q 037969 295 LEELYM 300 (300)
Q Consensus 295 L~~L~l 300 (300)
|+.|++
T Consensus 202 L~~L~l 207 (291)
T 1h6t_A 202 LDVLEL 207 (291)
T ss_dssp CSEEEE
T ss_pred CCEEEC
Confidence 998874
No 10
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=2.1e-17 Score=140.01 Aligned_cols=147 Identities=24% Similarity=0.280 Sum_probs=101.4
Q ss_pred cccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC-cccccCCCCcE
Q 037969 149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQT 227 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~ 227 (300)
..+++++.|++++|.+..++....+++|++|++++|.+ ..+|..+ ..+++|++|++++|.++.+| ..++.+++|++
T Consensus 52 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l--~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~ 128 (290)
T 1p9a_G 52 MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL--QSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQE 128 (290)
T ss_dssp TTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCC--SSCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCE
T ss_pred hcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcC--CcCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCE
Confidence 44566677777777766665555677777777777777 6666644 66777777777777777764 45677777777
Q ss_pred EEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 228 LCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 228 L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
|++++|.+.. | ..+..+++|+.|++++|.++.+|.. +.++++|++|++++|. +..+|.. +..+.+|+.|++
T Consensus 129 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~ip~~-~~~~~~L~~l~L 202 (290)
T 1p9a_G 129 LYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS-LYTIPKG-FFGSHLLPFAFL 202 (290)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCCCSEEEC
T ss_pred EECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc-CCccChh-hcccccCCeEEe
Confidence 7777777766 3 4456777777777777777777765 3567777777777777 6677766 566667776654
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=3.1e-17 Score=138.56 Aligned_cols=162 Identities=24% Similarity=0.334 Sum_probs=112.1
Q ss_pred EEeccccccCCC--ccccCCccEEEeecCCCccc-Cccc-cCCCccEEecccCc-cccccCchhHHhcCCcccEEEeeCC
Q 037969 136 LVRNEVVWEWPD--EDALKKCSAISLLNSSIHEV-SEEF-ECLQLEFLHISQNT-FVEVNIPDNIFKGMKTLRVIDLTRM 210 (300)
Q Consensus 136 ~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~-~~~~~l~~~~~~~l~~L~~L~l~~~ 210 (300)
.+.+..+..++. ...+++++.|++++|.+..+ +..+ .+++|++|++++|. + ..++...+..+++|++|++++|
T Consensus 38 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l--~~~~~~~~~~l~~L~~L~l~~n 115 (285)
T 1ozn_A 38 FLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL--RSVDPATFHGLGRLHTLHLDRC 115 (285)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC--CCCCTTTTTTCTTCCEEECTTS
T ss_pred EeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc--cccCHHHhcCCcCCCEEECCCC
Confidence 334444444442 24566777777777777555 3333 67778888888776 5 5564444577788888888888
Q ss_pred cCCcC-CcccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccch
Q 037969 211 RLFSL-PSSIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVP 286 (300)
Q Consensus 211 ~~~~l-p~~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~ 286 (300)
.++.+ |..++.+++|++|++++|.+.. + ..++.+++|++|++++|.++.+|.. +..+++|++|++++|. +..+++
T Consensus 116 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~ 194 (285)
T 1ozn_A 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHP 194 (285)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECT
T ss_pred cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc-ccccCH
Confidence 87775 5567778888888888888776 3 4477788888888888888777664 7778888888888887 455533
Q ss_pred hhhcCCCCCCeeeC
Q 037969 287 NVLSSFTRLEELYM 300 (300)
Q Consensus 287 ~~l~~L~~L~~L~l 300 (300)
..++.+++|++|++
T Consensus 195 ~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 195 HAFRDLGRLMTLYL 208 (285)
T ss_dssp TTTTTCTTCCEEEC
T ss_pred hHccCcccccEeeC
Confidence 33778888888764
No 12
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.74 E-value=6.1e-17 Score=138.41 Aligned_cols=156 Identities=17% Similarity=0.288 Sum_probs=103.9
Q ss_pred EEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC
Q 037969 136 LVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL 215 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l 215 (300)
.+.++.+..++....+++++.|++++|.+..++....+++|+.|++++|.+ ..++. +..+++|++|++++|.++.+
T Consensus 69 ~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l--~~~~~--l~~l~~L~~L~l~~n~l~~~ 144 (308)
T 1h6u_A 69 ELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI--TDVTP--LAGLSNLQVLYLDLNQITNI 144 (308)
T ss_dssp ECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCC--CCCGG--GTTCTTCCEEECCSSCCCCC
T ss_pred EccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCC--CCchh--hcCCCCCCEEECCCCccCcC
Confidence 344444444444455666677777776666665544667777777777766 55554 46677777777777777766
Q ss_pred CcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCC
Q 037969 216 PSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRL 295 (300)
Q Consensus 216 p~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L 295 (300)
|. ++.+++|++|++++|.+...+.+..+++|+.|++++|.++.+|. +..+++|++|++++|. +..+++ +..+++|
T Consensus 145 ~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L 219 (308)
T 1h6u_A 145 SP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQ-ISDVSP--LANTSNL 219 (308)
T ss_dssp GG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSC-CCBCGG--GTTCTTC
T ss_pred cc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCc-cCcccc--ccCCCCC
Confidence 54 66777777777777777663237777777777777777776664 6777777777777777 566664 6777777
Q ss_pred CeeeC
Q 037969 296 EELYM 300 (300)
Q Consensus 296 ~~L~l 300 (300)
+.|++
T Consensus 220 ~~L~l 224 (308)
T 1h6u_A 220 FIVTL 224 (308)
T ss_dssp CEEEE
T ss_pred CEEEc
Confidence 77653
No 13
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=3.3e-17 Score=138.82 Aligned_cols=157 Identities=20% Similarity=0.255 Sum_probs=107.9
Q ss_pred eccccccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC
Q 037969 138 RNEVVWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL 215 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l 215 (300)
.+..+..+|. ...++++.|++++|.+..++. .+ .+++|+.|++.+|.+ ..++.. ..+++|++|++++|.++.+
T Consensus 18 ~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~--~~l~~L~~L~Ls~N~l~~l 92 (290)
T 1p9a_G 18 DKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TKLQVD--GTLPVLGTLDLSHNQLQSL 92 (290)
T ss_dssp TTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC--CEEECC--SCCTTCCEEECCSSCCSSC
T ss_pred CCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCcc--CcccCC--CCCCcCCEEECCCCcCCcC
Confidence 3344445554 233567777777777755442 23 677777777777777 555552 5677777777777777777
Q ss_pred CcccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCC
Q 037969 216 PSSIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSF 292 (300)
Q Consensus 216 p~~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L 292 (300)
|..+..+++|++|++++|.+.. | ..+..+++|++|++++|.++.+|.. +..+++|+.|++++|. +..+|...+..+
T Consensus 93 ~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l 171 (290)
T 1p9a_G 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGL 171 (290)
T ss_dssp CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTTTTC
T ss_pred chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc-CCccCHHHhcCc
Confidence 7777777777777777777776 3 5577777777777777777766655 4667777777777777 667776656677
Q ss_pred CCCCeeeC
Q 037969 293 TRLEELYM 300 (300)
Q Consensus 293 ~~L~~L~l 300 (300)
++|++|++
T Consensus 172 ~~L~~L~L 179 (290)
T 1p9a_G 172 ENLDTLLL 179 (290)
T ss_dssp TTCCEEEC
T ss_pred CCCCEEEC
Confidence 77777764
No 14
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=4.2e-17 Score=136.93 Aligned_cols=148 Identities=28% Similarity=0.381 Sum_probs=130.7
Q ss_pred ccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc-ccccCCCCc
Q 037969 148 EDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANLQ 226 (300)
Q Consensus 148 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~ 226 (300)
...+++++.|++.++.+..++....+++|+.|++++|.+ ..++ . +..+++|++|++++|.++.+|. .++.+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l--~~~~-~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL--HDIS-A-LKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCC--CCCG-G-GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCC--CCch-h-hcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 356788999999999998888877999999999999998 6665 3 4899999999999999999765 478999999
Q ss_pred EEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 227 TLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 227 ~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
+|++++|.+.. + ..++.+++|++|++++|.++.+|.. ++.+++|++|++++|. +..+|+..++.+++|++|++
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEEC
Confidence 99999999988 4 5579999999999999999988776 5899999999999998 77888776789999999975
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=5.8e-17 Score=136.93 Aligned_cols=149 Identities=21% Similarity=0.317 Sum_probs=128.6
Q ss_pred cccCCccEEEeecCC-Cccc-Cccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc-ccccCCC
Q 037969 149 DALKKCSAISLLNSS-IHEV-SEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLAN 224 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~-~~~~-~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~ 224 (300)
..+++++.|++++|. +..+ +..+ .+++|+.|++.+|.+ ..++...+..+++|++|++++|.++.+|. .++.+++
T Consensus 77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 154 (285)
T 1ozn_A 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL--QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154 (285)
T ss_dssp TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcC--CEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCC
Confidence 557889999999997 7666 4444 899999999999999 77766666889999999999999999765 4889999
Q ss_pred CcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 225 LQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 225 L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
|++|++++|.+.. + ..+..+++|++|++++|.++.+ |..++++++|+.|++++|. +..+|...+..+++|++|++
T Consensus 155 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEEC
T ss_pred ccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEec
Confidence 9999999999987 4 4588999999999999999865 7789999999999999998 77788766899999999875
No 16
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=3.5e-17 Score=133.06 Aligned_cols=141 Identities=21% Similarity=0.342 Sum_probs=109.0
Q ss_pred EEeccccccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC
Q 037969 136 LVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF 213 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 213 (300)
...+..+..+|. ...++++.|++++|.+..++. .+ .+++|+.|++++|.+ ..+++..|.++++|++|++++|.++
T Consensus 17 ~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 17 DCRGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI--SELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp ECTTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCC--CEECTTTTTTCSSCCEEECCSSCCC
T ss_pred EcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcC--CCcCHHHhhCCcCCCEEECCCCcCC
Confidence 344555666665 234678888888888877664 23 788888888888888 6665445588888888888888888
Q ss_pred cCCcc-cccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCC
Q 037969 214 SLPSS-IGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCL 279 (300)
Q Consensus 214 ~lp~~-i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 279 (300)
.+|.. +..+++|++|++++|.+.. |..+..+++|++|++++|.++.+|.. +..+++|++|++++|+
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 87655 5778888888888888887 56788888888888888888877764 7778888888888887
No 17
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.73 E-value=1.1e-16 Score=136.80 Aligned_cols=157 Identities=25% Similarity=0.346 Sum_probs=135.0
Q ss_pred EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969 135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 214 (300)
..+.+..+..++....+++++.|++++|.+..++....+++|+.|++++|.+ ..++. +..+++|++|++++|.++.
T Consensus 46 L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l--~~~~~--~~~l~~L~~L~l~~n~l~~ 121 (308)
T 1h6u_A 46 LSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL--KNVSA--IAGLQSIKTLDLTSTQITD 121 (308)
T ss_dssp EECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCC--SCCGG--GTTCTTCCEEECTTSCCCC
T ss_pred EEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcC--CCchh--hcCCCCCCEEECCCCCCCC
Confidence 4455555666776677899999999999998888755899999999999998 77764 5889999999999999999
Q ss_pred CCcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCC
Q 037969 215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR 294 (300)
Q Consensus 215 lp~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~ 294 (300)
+|. ++.+++|++|++++|.+...+.++.+++|++|++++|.++.+|. +..+++|++|++++|. +..+|. +..+++
T Consensus 122 ~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~--l~~l~~ 196 (308)
T 1h6u_A 122 VTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-ISDISP--LASLPN 196 (308)
T ss_dssp CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG--GGGCTT
T ss_pred chh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc-cCcChh--hcCCCC
Confidence 875 88999999999999999884448899999999999999998887 8999999999999998 777776 789999
Q ss_pred CCeeeC
Q 037969 295 LEELYM 300 (300)
Q Consensus 295 L~~L~l 300 (300)
|++|++
T Consensus 197 L~~L~L 202 (308)
T 1h6u_A 197 LIEVHL 202 (308)
T ss_dssp CCEEEC
T ss_pred CCEEEc
Confidence 999875
No 18
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=5.1e-17 Score=132.07 Aligned_cols=141 Identities=23% Similarity=0.290 Sum_probs=101.8
Q ss_pred EEeccccccCCCccccCCccEEEeecCCCcccCc--cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcC
Q 037969 136 LVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSE--EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRL 212 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~--~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 212 (300)
...+..+..+|. .....++.|++++|.+..++. .+ .+++|+.|++++|.+ ..+++..|..+++|++|++++|.+
T Consensus 17 ~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i--~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 17 DCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI--TDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp ECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcC--CEECHHHhCCCCCCCEEECCCCcc
Confidence 344455555554 334456788888888766532 22 778888888888887 666665567788888888888888
Q ss_pred CcCCc-ccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCC
Q 037969 213 FSLPS-SIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCL 279 (300)
Q Consensus 213 ~~lp~-~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~ 279 (300)
+.+|. .++.+++|++|++++|.+.. |..+..+++|++|++++|.++.+ |..+..+++|++|++++|+
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence 77644 47778888888888888776 56677788888888888887766 5567778888888888877
No 19
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=5.3e-17 Score=135.64 Aligned_cols=143 Identities=28% Similarity=0.339 Sum_probs=104.3
Q ss_pred ccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcE
Q 037969 148 EDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQT 227 (300)
Q Consensus 148 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 227 (300)
...+++++.|++.+|.+..++....+++|+.|++++|.+ ..++. +..+++|++|++++|.++.+|.... .+|++
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i--~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQI--SDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCE
T ss_pred hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCcc--CCChh--hccCCCCCEEECCCCccCCcCcccc--CcccE
Confidence 345667778888887777777555777888888888777 66666 4777888888888887777765433 77888
Q ss_pred EEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 228 LCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 228 L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
|++++|.+..++.++.+++|++|++++|.++.+| .++.+++|++|++++|. +..++ . +..+++|+.|++
T Consensus 111 L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~-i~~~~-~-l~~l~~L~~L~l 179 (263)
T 1xeu_A 111 LFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNE-ITNTG-G-LTRLKKVNWIDL 179 (263)
T ss_dssp EECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSC-CCBCT-T-STTCCCCCEEEE
T ss_pred EEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCc-CcchH-H-hccCCCCCEEeC
Confidence 8888887777556777788888888888777775 57777888888888877 55553 2 677777777753
No 20
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=8.6e-17 Score=136.35 Aligned_cols=143 Identities=29% Similarity=0.374 Sum_probs=130.0
Q ss_pred cccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEE
Q 037969 149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTL 228 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 228 (300)
..+++++.|++.++.+..++....+++|+.|++++|.+ ..+++ +..+++|++|++++|.++.+|. ++.+++|++|
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l--~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCC--CCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred hhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCcc--CCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence 45778999999999998888767999999999999999 77777 5899999999999999999765 8999999999
Q ss_pred EccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 229 CLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 229 ~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
++++|.+..++.+..+++|++|++++|.++.+ ..++.+++|++|++++|. +..+++ +..+++|++|++
T Consensus 118 ~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--l~~l~~L~~L~L 185 (291)
T 1h6t_A 118 SLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYL 185 (291)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEEC
T ss_pred ECCCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh--hcCCCccCEEEC
Confidence 99999998877899999999999999999988 579999999999999998 777776 889999999975
No 21
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.72 E-value=3.8e-17 Score=134.49 Aligned_cols=162 Identities=15% Similarity=0.166 Sum_probs=105.8
Q ss_pred EEeccccccCCC--ccccCCccEEEeecCC-CcccCcc-c-cCCCccEEeccc-CccccccCchhHHhcCCcccEEEeeC
Q 037969 136 LVRNEVVWEWPD--EDALKKCSAISLLNSS-IHEVSEE-F-ECLQLEFLHISQ-NTFVEVNIPDNIFKGMKTLRVIDLTR 209 (300)
Q Consensus 136 ~~~~~~~~~~~~--~~~~~~l~~L~l~~~~-~~~~~~~-~-~~~~L~~L~l~~-~~~~~~~l~~~~~~~l~~L~~L~l~~ 209 (300)
.+.++.+..++. ...+++++.|++++|. +..++.. + .+++|+.|++++ |.+ ..++...|..+++|++|++++
T Consensus 37 ~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l--~~i~~~~f~~l~~L~~L~l~~ 114 (239)
T 2xwt_C 37 KLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL--TYIDPDALKELPLLKFLGIFN 114 (239)
T ss_dssp EEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC--CEECTTSEECCTTCCEEEEEE
T ss_pred EEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe--eEcCHHHhCCCCCCCEEeCCC
Confidence 344444444443 2456677777777775 6666542 2 677777777776 666 666655556777777777777
Q ss_pred CcCCcCCcccccCCCCc---EEEccCC-CCCC-c-ccccCCCCcC-EEEccCCCCCCCchhhcCCCCCCEEeccCCCCcc
Q 037969 210 MRLFSLPSSIGLLANLQ---TLCLDQS-MLGD-I-AIIGKLKNLE-ILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLK 282 (300)
Q Consensus 210 ~~~~~lp~~i~~l~~L~---~L~l~~~-~l~~-p-~~~~~l~~L~-~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~ 282 (300)
|.++.+|. ++.+.+|+ +|++++| .+.. + ..+..+++|+ +|++++|.++.+|......++|+.|++++|+.++
T Consensus 115 n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~ 193 (239)
T 2xwt_C 115 TGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLT 193 (239)
T ss_dssp ECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCC
T ss_pred CCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcc
Confidence 77777665 66666666 7777777 6665 3 4466777777 7777777777776665555677777777774466
Q ss_pred ccchhhhcCC-CCCCeeeC
Q 037969 283 FIVPNVLSSF-TRLEELYM 300 (300)
Q Consensus 283 ~lp~~~l~~L-~~L~~L~l 300 (300)
.+|...+..+ ++|++|++
T Consensus 194 ~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 194 VIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp EECTTTTTTCSBCCSEEEC
T ss_pred cCCHHHhhccccCCcEEEC
Confidence 6665556666 77776654
No 22
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.72 E-value=1e-16 Score=132.97 Aligned_cols=144 Identities=23% Similarity=0.341 Sum_probs=127.3
Q ss_pred CccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC-cccccCCCCcEEEcc
Q 037969 153 KCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQTLCLD 231 (300)
Q Consensus 153 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~ 231 (300)
+.+.+++.++.+..+|..+. ++++.|++.+|.+ ..++...+..+++|++|++++|.++.++ ..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCC--CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCCC-CCCCEEEccCCCc--CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 45789999999988887654 6899999999999 7777766789999999999999999964 558999999999999
Q ss_pred CCCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 232 QSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 232 ~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
+|.+.. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|. +..+|...++.+++|++|+|
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L 162 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSL 162 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEEC
Confidence 999988 4 6678999999999999999998876 5889999999999998 78888766899999999985
No 23
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=2.3e-16 Score=146.35 Aligned_cols=155 Identities=20% Similarity=0.320 Sum_probs=120.0
Q ss_pred EeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC
Q 037969 137 VRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP 216 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp 216 (300)
+.+..+..++....+++|+.|++++|.+..++....+++|+.|++++|.+ ..+|. +..+++|+.|+|++|.+..+|
T Consensus 50 l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l--~~l~~--l~~l~~L~~L~Ls~N~l~~l~ 125 (605)
T 1m9s_A 50 ANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKI--KDLSS--LKDLKKLKSLSLEHNGISDIN 125 (605)
T ss_dssp CTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCC--CCCTT--STTCTTCCEEECTTSCCCCCG
T ss_pred CcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCC--CCChh--hccCCCCCEEEecCCCCCCCc
Confidence 34444555566667788888888888887777655888888888888887 66653 477888888888888888764
Q ss_pred cccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCC
Q 037969 217 SSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLE 296 (300)
Q Consensus 217 ~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~ 296 (300)
.++.+++|+.|+|++|.+...+.++.+++|+.|++++|.++.+++ +..+++|+.|++++|. +..+|. +..+++|+
T Consensus 126 -~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-i~~l~~--l~~l~~L~ 200 (605)
T 1m9s_A 126 -GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRA--LAGLKNLD 200 (605)
T ss_dssp -GGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGG--GTTCTTCS
T ss_pred -cccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC-CCCChH--HccCCCCC
Confidence 477888888888888888776678888888888888888887766 7888888888888887 666654 78888888
Q ss_pred eeeC
Q 037969 297 ELYM 300 (300)
Q Consensus 297 ~L~l 300 (300)
.|+|
T Consensus 201 ~L~L 204 (605)
T 1m9s_A 201 VLEL 204 (605)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8765
No 24
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=3.2e-16 Score=126.14 Aligned_cols=144 Identities=21% Similarity=0.314 Sum_probs=119.9
Q ss_pred EeccccccCCCccccCCccEEEeecCCCcccCccc--cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969 137 VRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEF--ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 214 (300)
..+..+..+|. ...++++.|+++++.+..++... .+++|+.|++.+|.+ ..+|...|..+++|++|++++|.++.
T Consensus 14 c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 14 CYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKL--QSLPNGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp CCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCcc--CccChhhcCCCCCcCEEECCCCcCCc
Confidence 34444555554 34568999999999997777643 899999999999999 78888777889999999999999999
Q ss_pred CCcc-cccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccc
Q 037969 215 LPSS-IGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKF 283 (300)
Q Consensus 215 lp~~-i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~ 283 (300)
+|.. ++.+++|++|++++|.+.. + ..+..+++|++|++++|.++.+|.. +.++++|++|++++|.....
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC
Confidence 8654 6899999999999999988 4 4578999999999999999988876 78899999999999974433
No 25
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.70 E-value=1.2e-16 Score=139.73 Aligned_cols=161 Identities=24% Similarity=0.299 Sum_probs=134.3
Q ss_pred EEEeccccccCCCccccCCccEEEeecCCCcccCccc---cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCc
Q 037969 135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEF---ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMR 211 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~ 211 (300)
....+..+..+|. .....++.|++++|.+..++... .+++|+.|++++|.+ ..++...|..+++|++|+|++|.
T Consensus 23 l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i--~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 23 LSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL--NFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCC--CEECTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcC--CccChhhccCCCCCCEEECCCCc
Confidence 4455566777775 34567899999999997776543 789999999999999 88887767999999999999999
Q ss_pred CCcCCc-ccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchhh----cCCCCCCEEeccCCCCcccc
Q 037969 212 LFSLPS-SIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGEL----GQLTKLRLLDLTDCLQLKFI 284 (300)
Q Consensus 212 ~~~lp~-~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~~----~~l~~L~~L~l~~~~~l~~l 284 (300)
++.+|. .+..+.+|++|++++|.+.. +..+..+++|++|++++|.++.+|..+ ..+++|++|++++|. +..+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l 178 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKL 178 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCcc
Confidence 999754 68999999999999999987 678999999999999999999999875 679999999999998 8888
Q ss_pred chhhhcCCCCC--Ceee
Q 037969 285 VPNVLSSFTRL--EELY 299 (300)
Q Consensus 285 p~~~l~~L~~L--~~L~ 299 (300)
|...+..++++ +.|+
T Consensus 179 ~~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLY 195 (361)
T ss_dssp CHHHHHHSCHHHHTTEE
T ss_pred CHHHhhhccHhhcceEE
Confidence 87657777653 5554
No 26
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.70 E-value=1.9e-16 Score=133.06 Aligned_cols=152 Identities=24% Similarity=0.314 Sum_probs=118.3
Q ss_pred ccccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC-c
Q 037969 141 VVWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP-S 217 (300)
Q Consensus 141 ~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~ 217 (300)
.+..+|. ...++++.|++++|.+..++. .+ .+++|++|++++|.+ ..++...+..+++|++|++++|.++.++ .
T Consensus 18 ~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 94 (276)
T 2z62_A 18 NFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSLALG 94 (276)
T ss_dssp CCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred CccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcC--CccCHHHccCCcCCCEEECCCCccCccChh
Confidence 3444554 234578899999998876664 33 788999999999888 7777666688899999999999888864 6
Q ss_pred ccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCC--CchhhcCCCCCCEEeccCCCCccccchhhhcCCC
Q 037969 218 SIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVR--LPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFT 293 (300)
Q Consensus 218 ~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~ 293 (300)
.+..+++|++|++++|.+.. + ..++.+++|++|++++|.++. +|..++++++|++|++++|. +..+|...+..++
T Consensus 95 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~ 173 (276)
T 2z62_A 95 AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLH 173 (276)
T ss_dssp TTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHH
T ss_pred hhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhh
Confidence 68888999999999998877 3 468888999999999998875 68888899999999999988 6666544455555
Q ss_pred CCC
Q 037969 294 RLE 296 (300)
Q Consensus 294 ~L~ 296 (300)
+|+
T Consensus 174 ~L~ 176 (276)
T 2z62_A 174 QMP 176 (276)
T ss_dssp TCT
T ss_pred hcc
Confidence 555
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.70 E-value=1e-16 Score=149.63 Aligned_cols=155 Identities=23% Similarity=0.295 Sum_probs=130.3
Q ss_pred eccccccCCCccccCCccEEEeecCCCcccCcc-c-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC
Q 037969 138 RNEVVWEWPDEDALKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL 215 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l 215 (300)
.+.++..+|. ...++++.|++++|.+..++.. + ++++|++|++++|.+ ..+|+..|.++++|++|+|++|+++.+
T Consensus 39 ~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i--~~i~~~~f~~L~~L~~L~Ls~N~l~~l 115 (635)
T 4g8a_A 39 MELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQSL 115 (635)
T ss_dssp TTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred CCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcC--CCcChhHhcCCCCCCEEEccCCcCCCC
Confidence 3445667775 3456899999999999888753 3 899999999999999 889888789999999999999999998
Q ss_pred Cc-ccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCC--CCchhhcCCCCCCEEeccCCCCccccchhhhc
Q 037969 216 PS-SIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIV--RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLS 290 (300)
Q Consensus 216 p~-~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~ 290 (300)
|+ .++++++|++|++++|.+.. + ..++.+++|++|++++|.++ .+|..++.+++|++|++++|. +..++...+.
T Consensus 116 ~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~ 194 (635)
T 4g8a_A 116 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR 194 (635)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGH
T ss_pred CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccccccccc
Confidence 65 58999999999999999988 4 56899999999999999887 467889999999999999998 6666554465
Q ss_pred CCCCCC
Q 037969 291 SFTRLE 296 (300)
Q Consensus 291 ~L~~L~ 296 (300)
.+.+++
T Consensus 195 ~L~~l~ 200 (635)
T 4g8a_A 195 VLHQMP 200 (635)
T ss_dssp HHHTCT
T ss_pred chhhhh
Confidence 555443
No 28
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.69 E-value=4.2e-16 Score=127.45 Aligned_cols=143 Identities=21% Similarity=0.300 Sum_probs=126.3
Q ss_pred ccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcc-cccCCCCcEEEccC
Q 037969 154 CSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS-IGLLANLQTLCLDQ 232 (300)
Q Consensus 154 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~ 232 (300)
.+.++.+++.+..+|.... ++|+.|++++|.+ ..+++..|..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP-TNAQILYLHDNQI--TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC-TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC-CCCCEEEcCCCcc--CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 3568888888888887554 8999999999999 777666668999999999999999998754 68999999999999
Q ss_pred CCCCC-c-ccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 233 SMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 233 ~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
|.+.. + ..+..+++|++|++++|.++.+|..+..+++|++|++++|. +..+|...+..+++|++|++
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEe
Confidence 99988 4 45789999999999999999999999999999999999998 88888766899999999875
No 29
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.69 E-value=2.6e-16 Score=141.56 Aligned_cols=36 Identities=17% Similarity=0.280 Sum_probs=16.6
Q ss_pred cCCccEEEeecCCCcccCcc-c-cCCCccEEecccCcc
Q 037969 151 LKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTF 186 (300)
Q Consensus 151 ~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~ 186 (300)
+++++.|++++|.+..++.. + .+++|+.|++++|.+
T Consensus 122 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 159 (452)
T 3zyi_A 122 LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI 159 (452)
T ss_dssp CTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCC
T ss_pred cccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCc
Confidence 44444455554444444332 1 445555555555444
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.69 E-value=1.7e-16 Score=147.87 Aligned_cols=158 Identities=24% Similarity=0.321 Sum_probs=131.5
Q ss_pred EEEeccccccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcC
Q 037969 135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRL 212 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 212 (300)
....+..+..+|. ...++++.|++++|.+..++. .+ ++++|++|++++|.+ ..+++..|.++++|++|++++|.+
T Consensus 16 ~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 16 YQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI--ETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp EECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcc--cccCHHHhhchhhcCEeECCCCcc
Confidence 3445556677776 345789999999999977665 33 899999999999998 777666668999999999999999
Q ss_pred CcC-CcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCC--CCchhhcCCCCCCEEeccCCCCccccchh
Q 037969 213 FSL-PSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIV--RLPGELGQLTKLRLLDLTDCLQLKFIVPN 287 (300)
Q Consensus 213 ~~l-p~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~ 287 (300)
+.+ |..++.+++|++|++++|.+.. +..++.+++|++|++++|.++ .+|..++++++|++|++++|. +..+++.
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~ 171 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVN 171 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTT
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc-ceecChh
Confidence 997 8889999999999999999987 478999999999999999887 589999999999999999998 6666544
Q ss_pred hhcCCCCCC
Q 037969 288 VLSSFTRLE 296 (300)
Q Consensus 288 ~l~~L~~L~ 296 (300)
.++.+++|+
T Consensus 172 ~~~~l~~L~ 180 (606)
T 3vq2_A 172 DLQFLRENP 180 (606)
T ss_dssp TTHHHHHCT
T ss_pred hhhhhhccc
Confidence 366655554
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=2.8e-16 Score=140.85 Aligned_cols=36 Identities=17% Similarity=0.346 Sum_probs=16.7
Q ss_pred cCCccEEEeecCCCcccCcc-c-cCCCccEEecccCcc
Q 037969 151 LKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTF 186 (300)
Q Consensus 151 ~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~ 186 (300)
+++++.|++++|.+..++.. + .+++|+.|++++|.+
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i 148 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI 148 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCC
T ss_pred CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcc
Confidence 34444555555544444431 1 445555555555444
No 32
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=5e-16 Score=126.22 Aligned_cols=142 Identities=23% Similarity=0.344 Sum_probs=125.2
Q ss_pred cEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEEccCC
Q 037969 155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQS 233 (300)
Q Consensus 155 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~ 233 (300)
+.++..++.+..+|.... ++++.|++.+|.+ ..++...|..+++|++|++++|.++.+ |..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i--~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSCC--CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCcC--CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 567888888888887554 7899999999999 788876678999999999999999986 788999999999999999
Q ss_pred CCCC-c-ccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 234 MLGD-I-AIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 234 ~l~~-p-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
.+.. | ..+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+|...+..+++|++|++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEe
Confidence 9998 5 4468899999999999999977 4568999999999999999 78888766899999999875
No 33
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=2e-16 Score=132.95 Aligned_cols=149 Identities=18% Similarity=0.250 Sum_probs=107.7
Q ss_pred cccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc--CCcccccCCC
Q 037969 149 DALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS--LPSSIGLLAN 224 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~ 224 (300)
..+++++.|++++|.+..++. .+ .+++|+.|++.+|.+ ..++...+..+++|++|++++|.++. +|..++.+++
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~ 150 (276)
T 2z62_A 73 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL--ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150 (276)
T ss_dssp TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC--CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred cCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCc--cccCchhcccCCCCCEEECcCCccceecCchhhccCCC
Confidence 445667777777777755542 23 677777777777777 55555334677777777777777776 5677777777
Q ss_pred CcEEEccCCCCCC--cccccCCCCcC----EEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCee
Q 037969 225 LQTLCLDQSMLGD--IAIIGKLKNLE----ILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL 298 (300)
Q Consensus 225 L~~L~l~~~~l~~--p~~~~~l~~L~----~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L 298 (300)
|++|++++|.+.. +..+..+++|+ .|++++|.++.+|.......+|+.|++++|. ++.+|...++.+++|++|
T Consensus 151 L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 229 (276)
T 2z62_A 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKI 229 (276)
T ss_dssp CCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEE
T ss_pred CCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccccEE
Confidence 8888887777766 34555555555 7777777777777666666689999999998 788887767889999988
Q ss_pred eC
Q 037969 299 YM 300 (300)
Q Consensus 299 ~l 300 (300)
++
T Consensus 230 ~l 231 (276)
T 2z62_A 230 WL 231 (276)
T ss_dssp EC
T ss_pred Ec
Confidence 75
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.68 E-value=2.8e-16 Score=134.59 Aligned_cols=97 Identities=22% Similarity=0.296 Sum_probs=40.9
Q ss_pred cccEEEeeCCcCCc-CCcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccC
Q 037969 201 TLRVIDLTRMRLFS-LPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTD 277 (300)
Q Consensus 201 ~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 277 (300)
.|++|++++|.++. .|..++.+. |++|++++|.+.. |..++.+++|++|++++|.++..++.+..+++|++|++++
T Consensus 175 ~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~ 253 (313)
T 1ogq_A 175 LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN 253 (313)
T ss_dssp TCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCS
T ss_pred cCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcC
Confidence 34444444443332 333333333 3333333333332 3334444444444444444443333344444555555555
Q ss_pred CCCccccchhhhcCCCCCCeee
Q 037969 278 CLQLKFIVPNVLSSFTRLEELY 299 (300)
Q Consensus 278 ~~~l~~lp~~~l~~L~~L~~L~ 299 (300)
|...+.+|.. ++.+++|++|+
T Consensus 254 N~l~~~~p~~-l~~l~~L~~L~ 274 (313)
T 1ogq_A 254 NRIYGTLPQG-LTQLKFLHSLN 274 (313)
T ss_dssp SCCEECCCGG-GGGCTTCCEEE
T ss_pred CcccCcCChH-HhcCcCCCEEE
Confidence 5432244443 44455555444
No 35
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.68 E-value=9.6e-16 Score=123.33 Aligned_cols=141 Identities=23% Similarity=0.387 Sum_probs=97.3
Q ss_pred EEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcc-cccCCCCcEEEccCCC
Q 037969 156 AISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS-IGLLANLQTLCLDQSM 234 (300)
Q Consensus 156 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 234 (300)
.+...++.+..+|... .++++.|++.+|.+ ..++...+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI-PAQTTYLDLETNSL--KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCCC-CCCCcEEEcCCCcc--CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4555666666666433 35677777777777 666666566777777777777777776543 5677777777777777
Q ss_pred CCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 235 LGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 235 l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
+.. + ..++.+++|++|++++|.++.+|.. +.++++|++|++++|. +..+|...+..+++|++|++
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEe
Confidence 776 3 3456777777777777777766654 5677777777777776 56666655677777777764
No 36
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.68 E-value=1.4e-16 Score=131.13 Aligned_cols=153 Identities=14% Similarity=0.241 Sum_probs=130.8
Q ss_pred cccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCc-cccccCchhHHhcCCcccEEEeeC-CcCCcCC-
Q 037969 142 VWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNT-FVEVNIPDNIFKGMKTLRVIDLTR-MRLFSLP- 216 (300)
Q Consensus 142 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~-~~~~~l~~~~~~~l~~L~~L~l~~-~~~~~lp- 216 (300)
+..+|. ...+++.|++++|.+..++. .+ .+++|+.|++.+|. + ..+++..|.++++|++|++++ |.++.+|
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l--~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTL--QQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSC--CEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCc--ceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 666666 55689999999999988876 33 89999999999997 7 788876678999999999998 9999976
Q ss_pred cccccCCCCcEEEccCCCCCCcccccCCCCcC---EEEccCC-CCCCCchh-hcCCCCCC-EEeccCCCCccccchhhhc
Q 037969 217 SSIGLLANLQTLCLDQSMLGDIAIIGKLKNLE---ILSFLNS-DIVRLPGE-LGQLTKLR-LLDLTDCLQLKFIVPNVLS 290 (300)
Q Consensus 217 ~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~---~L~l~~~-~l~~lp~~-~~~l~~L~-~L~l~~~~~l~~lp~~~l~ 290 (300)
..+..+++|++|++++|.+...+.++.+++|+ +|++++| .++.+|.. +..+++|+ +|++++|. +..+|...+.
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~ 177 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFN 177 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTT
T ss_pred HHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcC
Confidence 56889999999999999998833388888888 9999999 99988875 88999999 99999998 7799987444
Q ss_pred CCCCCCeeeC
Q 037969 291 SFTRLEELYM 300 (300)
Q Consensus 291 ~L~~L~~L~l 300 (300)
. ++|++|++
T Consensus 178 ~-~~L~~L~L 186 (239)
T 2xwt_C 178 G-TKLDAVYL 186 (239)
T ss_dssp T-CEEEEEEC
T ss_pred C-CCCCEEEc
Confidence 4 78888865
No 37
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.68 E-value=2.2e-16 Score=135.29 Aligned_cols=148 Identities=19% Similarity=0.295 Sum_probs=107.6
Q ss_pred cccCCccEEEeec-CCC-cccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC-cCCcccccCCC
Q 037969 149 DALKKCSAISLLN-SSI-HEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF-SLPSSIGLLAN 224 (300)
Q Consensus 149 ~~~~~l~~L~l~~-~~~-~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~ 224 (300)
..+++++.|++++ +.+ ..+|..+ .+++|++|++++|.+ .+.+|..+ ..+++|++|++++|.++ .+|..++.+++
T Consensus 73 ~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l-~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 150 (313)
T 1ogq_A 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV-SGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPN 150 (313)
T ss_dssp GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECC-EEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTT
T ss_pred hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCee-CCcCCHHH-hCCCCCCEEeCCCCccCCcCChHHhcCCC
Confidence 5667778888874 666 4566555 778888888887777 23566554 77788888888888777 36777788888
Q ss_pred CcEEEccCCCCCC--cccccCCC-CcCEEEccCCCCC-CCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 225 LQTLCLDQSMLGD--IAIIGKLK-NLEILSFLNSDIV-RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 225 L~~L~l~~~~l~~--p~~~~~l~-~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
|++|++++|.+.. |..++.++ +|++|++++|.++ .+|..++.++ |++|++++|...+..|. .++.+++|++|++
T Consensus 151 L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L 228 (313)
T 1ogq_A 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-LFGSDKNTQKIHL 228 (313)
T ss_dssp CCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG-GCCTTSCCSEEEC
T ss_pred CCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH-HHhcCCCCCEEEC
Confidence 8888888887763 67777777 7888888888776 6777777776 88888888873333444 4788888888865
No 38
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=5.4e-16 Score=139.05 Aligned_cols=163 Identities=20% Similarity=0.276 Sum_probs=139.0
Q ss_pred EEEeccccccCCC--ccccCCccEEEeecCCCcccCccc--cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC
Q 037969 135 FLVRNEVVWEWPD--EDALKKCSAISLLNSSIHEVSEEF--ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210 (300)
Q Consensus 135 ~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~ 210 (300)
..+.++.+..++. ...+++++.|++++|.+..++... .+++|+.|++.+|... ..++...|.++++|++|++++|
T Consensus 117 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l-~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 117 LELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRL-SYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp EECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC-CEECTTTTTTCSSCCEEECTTS
T ss_pred EECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCc-ceeCcchhhcccccCeecCCCC
Confidence 4455556666654 366789999999999998777633 8999999999985442 6777777799999999999999
Q ss_pred cCCcCCcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCCccccchh
Q 037969 211 RLFSLPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPN 287 (300)
Q Consensus 211 ~~~~lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~ 287 (300)
.++.+|. +..+++|++|++++|.+.. |..+..+++|+.|++++|.++.++ ..+.++++|++|++++|. +..+|..
T Consensus 196 ~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 273 (440)
T 3zyj_A 196 NLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHD 273 (440)
T ss_dssp CCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTT
T ss_pred cCccccc-cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChh
Confidence 9999985 8899999999999999987 688999999999999999999664 458899999999999998 8888887
Q ss_pred hhcCCCCCCeeeC
Q 037969 288 VLSSFTRLEELYM 300 (300)
Q Consensus 288 ~l~~L~~L~~L~l 300 (300)
.+..+++|+.|+|
T Consensus 274 ~~~~l~~L~~L~L 286 (440)
T 3zyj_A 274 LFTPLHHLERIHL 286 (440)
T ss_dssp TTSSCTTCCEEEC
T ss_pred HhccccCCCEEEc
Confidence 7899999999875
No 39
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.68 E-value=7.7e-16 Score=125.09 Aligned_cols=142 Identities=18% Similarity=0.329 Sum_probs=122.7
Q ss_pred cEEEeecCCCcccCccccCCCccEEecccCccccccC-chhHHhcCCcccEEEeeCCcCCcCC-cccccCCCCcEEEccC
Q 037969 155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNI-PDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQTLCLDQ 232 (300)
Q Consensus 155 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l-~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~ 232 (300)
+.++++++.+..+|..+ .+.++.|++++|.+ ..+ +..+|..+++|++|++++|.++.++ ..++.+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l--~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEF--TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSCC--CEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCcC--CccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 57899999998888754 34678999999999 666 4455689999999999999999975 4799999999999999
Q ss_pred CCCCC--cccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 233 SMLGD--IAIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 233 ~~l~~--p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
|.+.. +..+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+++..+..+++|++|++
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEe
Confidence 99988 45689999999999999999977 5678999999999999999 77775555999999999875
No 40
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=138.59 Aligned_cols=148 Identities=22% Similarity=0.221 Sum_probs=73.5
Q ss_pred cccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc--ccccCCC
Q 037969 149 DALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS--SIGLLAN 224 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~--~i~~l~~ 224 (300)
..+++++.|++++|.+..++. .+ .+++|++|++++|.+ ..+|...+..+++|++|++++|.++.+|. .++.+++
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~ 150 (353)
T 2z80_A 73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYL--SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150 (353)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTT
T ss_pred ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcC--CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCC
Confidence 334455555555555533322 12 455555555555555 44554444555555555555555555443 3455555
Q ss_pred CcEEEccCCC-CCC--cccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969 225 LQTLCLDQSM-LGD--IAIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299 (300)
Q Consensus 225 L~~L~l~~~~-l~~--p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 299 (300)
|++|++++|. +.. +..++.+++|++|++++|.++.+ |..++++++|++|++++|. ++.+|...++.+++|++|+
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLE 228 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEE
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEEE
Confidence 5555555552 333 23455555555555555555433 4445555555555555555 4445544334455555554
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=1.8e-16 Score=135.25 Aligned_cols=162 Identities=22% Similarity=0.263 Sum_probs=127.4
Q ss_pred EEeccccccCCC-ccccCCccEEEeecCCCcccCc--c-ccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCc
Q 037969 136 LVRNEVVWEWPD-EDALKKCSAISLLNSSIHEVSE--E-FECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMR 211 (300)
Q Consensus 136 ~~~~~~~~~~~~-~~~~~~l~~L~l~~~~~~~~~~--~-~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~ 211 (300)
.+..+.+..++. ...+++++.|++++|.+..++. . ..+++|+.|++.+|.+ ...+...+..+++|++|++++|.
T Consensus 84 ~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 84 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT--RVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp ECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC--EECSTTTTTTCTTCCEEECTTCE
T ss_pred ECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC--CccchhhcccCcCCCEEECCCCc
Confidence 344444444443 2567889999999998866654 2 3889999999999988 55555556888999999999999
Q ss_pred CCc--CCcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCccccch
Q 037969 212 LFS--LPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCLQLKFIVP 286 (300)
Q Consensus 212 ~~~--lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~ 286 (300)
++. +|..++.+++|++|++++|.+.. |..+..+++|++|++++|.++.+|. .+..+++|++|++++|...+..|.
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 241 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 241 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence 886 68889999999999999999887 5778899999999999999987765 578899999999999984444444
Q ss_pred hhhcCC-CCCCeeeC
Q 037969 287 NVLSSF-TRLEELYM 300 (300)
Q Consensus 287 ~~l~~L-~~L~~L~l 300 (300)
. +..+ ++|++|++
T Consensus 242 ~-~~~~~~~L~~L~L 255 (306)
T 2z66_A 242 E-LQHFPSSLAFLNL 255 (306)
T ss_dssp S-CCCCCTTCCEEEC
T ss_pred H-HHhhhccCCEEEc
Confidence 4 7777 48988875
No 42
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=2.7e-16 Score=122.26 Aligned_cols=131 Identities=24% Similarity=0.298 Sum_probs=115.1
Q ss_pred cCCccEEEeecCCCc--ccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcccccCCCCc
Q 037969 151 LKKCSAISLLNSSIH--EVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQ 226 (300)
Q Consensus 151 ~~~l~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~ 226 (300)
.++++.|++++|.+. .+|..+ .+++|+.|++.+|.+ ..+ .. +..+++|++|++++|.++. +|..++.+++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l--~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 98 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISV-SN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC--CCC-SS-CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCC
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC--CCh-hh-hccCCCCCEEECcCCcCchHHHHHHhhCCCCC
Confidence 467999999999987 888875 899999999999998 666 33 4889999999999999998 777788899999
Q ss_pred EEEccCCCCCC-c--ccccCCCCcCEEEccCCCCCCCch----hhcCCCCCCEEeccCCCCccccch
Q 037969 227 TLCLDQSMLGD-I--AIIGKLKNLEILSFLNSDIVRLPG----ELGQLTKLRLLDLTDCLQLKFIVP 286 (300)
Q Consensus 227 ~L~l~~~~l~~-p--~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~~~~l~~lp~ 286 (300)
+|++++|.+.. + ..+..+++|++|++++|.++.+|. .+..+++|++|++++|. ...+|.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~ 164 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPD 164 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhccc
Confidence 99999999988 4 788999999999999999998887 78899999999999998 677765
No 43
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=7.1e-16 Score=138.72 Aligned_cols=163 Identities=18% Similarity=0.248 Sum_probs=138.5
Q ss_pred EEEeccccccCCCc--cccCCccEEEeecCCCcccCccc--cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC
Q 037969 135 FLVRNEVVWEWPDE--DALKKCSAISLLNSSIHEVSEEF--ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210 (300)
Q Consensus 135 ~~~~~~~~~~~~~~--~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~ 210 (300)
..+.++.+..++.. ..+++++.|++++|.+..++... .+++|+.|++.+|..+ ..++...|..+++|++|++++|
T Consensus 128 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l-~~i~~~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 128 LELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKL-EYISEGAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp EECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTC-CEECTTTTTTCTTCCEEECTTS
T ss_pred EECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCc-cccChhhccCCCCCCEEECCCC
Confidence 44455556555543 56889999999999998777633 8999999999985442 7778777789999999999999
Q ss_pred cCCcCCcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchh
Q 037969 211 RLFSLPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPN 287 (300)
Q Consensus 211 ~~~~lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~ 287 (300)
.++.+|. +..+++|++|++++|.+.. |..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|. +..+|..
T Consensus 207 ~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~ 284 (452)
T 3zyi_A 207 NIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHD 284 (452)
T ss_dssp CCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTT
T ss_pred ccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChH
Confidence 9999874 8899999999999999987 68899999999999999999866 5568999999999999998 8888887
Q ss_pred hhcCCCCCCeeeC
Q 037969 288 VLSSFTRLEELYM 300 (300)
Q Consensus 288 ~l~~L~~L~~L~l 300 (300)
.+..+++|++|++
T Consensus 285 ~~~~l~~L~~L~L 297 (452)
T 3zyi_A 285 LFTPLRYLVELHL 297 (452)
T ss_dssp SSTTCTTCCEEEC
T ss_pred HhccccCCCEEEc
Confidence 7889999999875
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.67 E-value=9.8e-16 Score=135.13 Aligned_cols=87 Identities=17% Similarity=0.263 Sum_probs=59.5
Q ss_pred cccCCccEEEeecCCCcccCcc-c-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCC
Q 037969 149 DALKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANL 225 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L 225 (300)
..+++++.|++++|.+..++.. + .+++|+.|++.+|.+ ..+|..+|..+++|++|++++|.++.+ |..++.+++|
T Consensus 90 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 90 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred cCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCcc--CcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCC
Confidence 4566677777777777555432 2 677777777777777 677766666777777777777777765 4456777777
Q ss_pred cEEEccCCCCCC
Q 037969 226 QTLCLDQSMLGD 237 (300)
Q Consensus 226 ~~L~l~~~~l~~ 237 (300)
++|++++|.+..
T Consensus 168 ~~L~l~~n~l~~ 179 (390)
T 3o6n_A 168 QNLQLSSNRLTH 179 (390)
T ss_dssp CEEECCSSCCSB
T ss_pred CEEECCCCcCCc
Confidence 777777776543
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=1.1e-16 Score=139.26 Aligned_cols=161 Identities=22% Similarity=0.307 Sum_probs=132.9
Q ss_pred EEeccccccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC
Q 037969 136 LVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF 213 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 213 (300)
...+..+..+|. ...++++.|++++|.+..++. .+ .+++|+.|++++|.+ ..+++..|.++++|++|++++|.++
T Consensus 37 ~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 37 KGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp ECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCS
T ss_pred eCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCcc--CccCHhhcCCCCCCCEEECCCCcCC
Confidence 344555666765 345689999999999987776 33 899999999999998 6776655689999999999999999
Q ss_pred cCCcc-cccCCCCcEEEccCCCCCC-cc--cccCCCCcCEEEccCC-CCCCCc-hhhcCCCCCCEEeccCCCCccccchh
Q 037969 214 SLPSS-IGLLANLQTLCLDQSMLGD-IA--IIGKLKNLEILSFLNS-DIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPN 287 (300)
Q Consensus 214 ~lp~~-i~~l~~L~~L~l~~~~l~~-p~--~~~~l~~L~~L~l~~~-~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~ 287 (300)
.+|.. ++.+++|++|++++|.+.. |. .+..+++|++|++++| .+..++ ..++++++|++|++++|. +..+++.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 192 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPK 192 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTT
T ss_pred cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHH
Confidence 98766 8899999999999999888 54 6889999999999999 577664 568999999999999998 5555333
Q ss_pred hhcCCCCCCeeeC
Q 037969 288 VLSSFTRLEELYM 300 (300)
Q Consensus 288 ~l~~L~~L~~L~l 300 (300)
.++.+++|++|++
T Consensus 193 ~l~~l~~L~~L~l 205 (353)
T 2z80_A 193 SLKSIQNVSHLIL 205 (353)
T ss_dssp TTTTCSEEEEEEE
T ss_pred HHhccccCCeecC
Confidence 4899999998864
No 46
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.67 E-value=5.1e-16 Score=143.99 Aligned_cols=144 Identities=29% Similarity=0.379 Sum_probs=130.7
Q ss_pred ccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcE
Q 037969 148 EDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQT 227 (300)
Q Consensus 148 ~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 227 (300)
...+++++.|++.++.+..++....+++|+.|++++|.+ ..+++ +..+++|+.|+|++|.++.+| .++.+++|++
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l--~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKL--TDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS 113 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCC--CCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred hhcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCC--CCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence 356788999999999998888777999999999999999 77777 589999999999999999877 6899999999
Q ss_pred EEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 228 LCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 228 L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
|++++|.+..++.+..+++|+.|++++|.++.+ ..++.+++|+.|++++|. +..+++ +..+++|+.|+|
T Consensus 114 L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~L 182 (605)
T 1m9s_A 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--LAGLTKLQNLYL 182 (605)
T ss_dssp EECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG--GTTCTTCCEEEC
T ss_pred EEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh--hccCCCCCEEEC
Confidence 999999999877799999999999999999988 579999999999999998 677766 889999999986
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=3.2e-16 Score=133.68 Aligned_cols=130 Identities=23% Similarity=0.334 Sum_probs=69.4
Q ss_pred cccCCccEEEeecCCCccc-Cccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCC
Q 037969 149 DALKKCSAISLLNSSIHEV-SEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANL 225 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L 225 (300)
..+++++.|++++|.+... +..+ .+++|+.|++.+|.+....+|..+ ..+++|++|++++|.++.+ |..++.+++|
T Consensus 123 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 201 (306)
T 2z66_A 123 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201 (306)
T ss_dssp TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC-TTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH-hhCcCCCEEECCCCCcCCcCHHHhcCCCCC
Confidence 3445566666666655322 2222 555666666666655111233332 5556666666666666554 4455556666
Q ss_pred cEEEccCCCCCC--cccccCCCCcCEEEccCCCCCC-CchhhcCCC-CCCEEeccCCC
Q 037969 226 QTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVR-LPGELGQLT-KLRLLDLTDCL 279 (300)
Q Consensus 226 ~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~-~L~~L~l~~~~ 279 (300)
++|++++|.+.. +..+..+++|++|++++|.++. .|..+..++ +|++|++++|+
T Consensus 202 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 666666666554 2345556666666666665553 333455553 56666666655
No 48
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.67 E-value=6.3e-16 Score=139.94 Aligned_cols=146 Identities=23% Similarity=0.317 Sum_probs=68.9
Q ss_pred cCCccEEEeecCCCccc-Cccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcE
Q 037969 151 LKKCSAISLLNSSIHEV-SEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQT 227 (300)
Q Consensus 151 ~~~l~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~ 227 (300)
+++++.|++++|.+..+ |..+ ++++|++|++.+|.+ ..+|...|.++++|++|++++|.++.+ |..+..+++|++
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 132 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL--KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKS 132 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC--CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC--CccCcccccCCCCCCEEECCCCccccCChhHccccccCCE
Confidence 44444444444444332 2222 444455555544444 444444334444555555555544442 334444555555
Q ss_pred EEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969 228 LCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299 (300)
Q Consensus 228 L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 299 (300)
|++++|.+.. +..+..+++|++|++++|.++.+|.. +.++++|+.|++++|. +..++...+..+++|++|+
T Consensus 133 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 133 LEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp EEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEE
T ss_pred EECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceee
Confidence 5555554443 33444555555555555555544432 4455555555555554 3334433355555555554
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.67 E-value=8.4e-16 Score=143.00 Aligned_cols=87 Identities=17% Similarity=0.263 Sum_probs=59.3
Q ss_pred cccCCccEEEeecCCCcccCcc-c-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCC
Q 037969 149 DALKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANL 225 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L 225 (300)
..+++++.|++++|.+..++.. + .+++|++|++++|.+ ..+|..+|+.+++|++|++++|.++.+ |..++.+++|
T Consensus 96 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 173 (597)
T 3oja_B 96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL--SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCC--CCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcC
Confidence 4566677777777777555543 2 677777777777777 667766666777777777777777765 3457777777
Q ss_pred cEEEccCCCCCC
Q 037969 226 QTLCLDQSMLGD 237 (300)
Q Consensus 226 ~~L~l~~~~l~~ 237 (300)
++|++++|.+..
T Consensus 174 ~~L~L~~N~l~~ 185 (597)
T 3oja_B 174 QNLQLSSNRLTH 185 (597)
T ss_dssp CEEECTTSCCSB
T ss_pred cEEECcCCCCCC
Confidence 777777776543
No 50
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.67 E-value=1.1e-15 Score=146.14 Aligned_cols=149 Identities=27% Similarity=0.362 Sum_probs=98.9
Q ss_pred cccCCccEEEeecCCCc-ccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcc-------
Q 037969 149 DALKKCSAISLLNSSIH-EVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSS------- 218 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~------- 218 (300)
..+++++.|++++|.+. .+|..+ .+++|+.|++.+|.+ .+.+|..+ +.+++|++|++++|.+.. +|..
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l-~~~~p~~l-~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~ 564 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF-SGNIPAEL-GDCRSLIWLDLNTNLFNGTIPAAMFKQSGK 564 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-EEECCGGG-GGCTTCCEEECCSSEEESBCCGGGGTTTTC
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcc-cCcCCHHH-cCCCCCCEEECCCCccCCcCChHHhcccch
Confidence 34555666666666663 455444 566666666666665 23555544 566666666666665542 3332
Q ss_pred ---------------------------------------------------------------cccCCCCcEEEccCCCC
Q 037969 219 ---------------------------------------------------------------IGLLANLQTLCLDQSML 235 (300)
Q Consensus 219 ---------------------------------------------------------------i~~l~~L~~L~l~~~~l 235 (300)
++.+.+|++|++++|.+
T Consensus 565 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l 644 (768)
T 3rgz_A 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML 644 (768)
T ss_dssp BCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCC
T ss_pred hhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcc
Confidence 22345677777777777
Q ss_pred CC--cccccCCCCcCEEEccCCCCC-CCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 236 GD--IAIIGKLKNLEILSFLNSDIV-RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 236 ~~--p~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
.. |..++.+++|+.|++++|.++ .+|..++++++|+.|++++|...+.+|.. ++.+++|++|++
T Consensus 645 ~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~L~l 711 (768)
T 3rgz_A 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQA-MSALTMLTEIDL 711 (768)
T ss_dssp BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGG-GGGCCCCSEEEC
T ss_pred cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEEC
Confidence 64 677788888888888888777 77878888888888888888866677766 788888887765
No 51
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=8.2e-16 Score=122.74 Aligned_cols=141 Identities=16% Similarity=0.159 Sum_probs=122.8
Q ss_pred EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCcccccc-CchhHHhcCCcccEEEeeCCcCC
Q 037969 135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVN-IPDNIFKGMKTLRVIDLTRMRLF 213 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-l~~~~~~~l~~L~~L~l~~~~~~ 213 (300)
..+.+..+..++....+++++.|++++|.+..++....+++|++|++.+|.+ .. .+..+ +.+++|++|++++|.++
T Consensus 49 L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l--~~~~~~~l-~~l~~L~~L~Ls~n~i~ 125 (197)
T 4ezg_A 49 ITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDV--TSDKIPNL-SGLTSLTLLDISHSAHD 125 (197)
T ss_dssp EEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTC--BGGGSCCC-TTCTTCCEEECCSSBCB
T ss_pred EeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCcc--CcccChhh-cCCCCCCEEEecCCccC
Confidence 4556666777777788999999999999887777666999999999999998 43 45544 88999999999999999
Q ss_pred c-CCcccccCCCCcEEEccCCC-CCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCC
Q 037969 214 S-LPSSIGLLANLQTLCLDQSM-LGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCL 279 (300)
Q Consensus 214 ~-lp~~i~~l~~L~~L~l~~~~-l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~ 279 (300)
. .|..++.+++|++|++++|. +...+.+..+++|++|++++|.++.++ .+..+++|++|++++|+
T Consensus 126 ~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 126 DSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred cHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 7 67889999999999999998 777557999999999999999999987 78999999999999998
No 52
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.67 E-value=9.7e-16 Score=135.18 Aligned_cols=80 Identities=28% Similarity=0.304 Sum_probs=47.6
Q ss_pred cccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCC
Q 037969 219 IGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLE 296 (300)
Q Consensus 219 i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~ 296 (300)
++.+++|++|++++|.+.. |..++.+++|++|++++|.++.+|..+..+++|++|++++|. +..+|.. ++.+++|+
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~l~~L~ 321 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN-QPQFDRLE 321 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG-HHHHTTCS
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCcc-ccccCcCC
Confidence 4445566666666666554 455666666666666666666666555566666666666665 5555554 55556666
Q ss_pred eeeC
Q 037969 297 ELYM 300 (300)
Q Consensus 297 ~L~l 300 (300)
+|++
T Consensus 322 ~L~L 325 (390)
T 3o6n_A 322 NLYL 325 (390)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 5543
No 53
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.67 E-value=2.9e-15 Score=129.95 Aligned_cols=154 Identities=21% Similarity=0.274 Sum_probs=91.5
Q ss_pred EEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC
Q 037969 136 LVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL 215 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l 215 (300)
.+.+..+..++....+++++.|++++|.+..++....+++|++|++.+|.+ ..++. +..+++|++|++++|.++.+
T Consensus 50 ~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i--~~~~~--~~~l~~L~~L~l~~n~i~~~ 125 (347)
T 4fmz_A 50 VVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKI--TDISA--LQNLTNLRELYLNEDNISDI 125 (347)
T ss_dssp ECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC--CCCGG--GTTCTTCSEEECTTSCCCCC
T ss_pred EEeCCccccchhhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcc--cCchH--HcCCCcCCEEECcCCcccCc
Confidence 344444555555556666777777777666666544667777777777766 55543 46667777777777766666
Q ss_pred CcccccCCCCcEEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCC
Q 037969 216 PSSIGLLANLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR 294 (300)
Q Consensus 216 p~~i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~ 294 (300)
|. +..+++|++|++++|.... ++.+..+++|++|++++|.+..++. ++.+++|++|++++|. +..++. +..+++
T Consensus 126 ~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~ 200 (347)
T 4fmz_A 126 SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQ-IEDISP--LASLTS 200 (347)
T ss_dssp GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSC-CCCCGG--GGGCTT
T ss_pred hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCc-cccccc--ccCCCc
Confidence 55 5666666666666664333 4446666666666666665555543 5556666666666655 444443 344444
Q ss_pred CCee
Q 037969 295 LEEL 298 (300)
Q Consensus 295 L~~L 298 (300)
|+.|
T Consensus 201 L~~L 204 (347)
T 4fmz_A 201 LHYF 204 (347)
T ss_dssp CCEE
T ss_pred ccee
Confidence 4444
No 54
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.66 E-value=3.7e-15 Score=129.28 Aligned_cols=125 Identities=20% Similarity=0.293 Sum_probs=54.7
Q ss_pred cccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEE
Q 037969 149 DALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTL 228 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 228 (300)
..+++++.|++++|.+..++....+++|+.|++.+|.+ ..++. +..+++|++|++++|.++.+|. +..+++|++|
T Consensus 174 ~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l--~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 248 (347)
T 4fmz_A 174 ANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQI--TDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWL 248 (347)
T ss_dssp GGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCC--CCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccCCCCCEEEccCCcccccccccCCCccceeecccCCC--CCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEE
Confidence 34445555555555544444333444444444444443 33322 2344444444444444444433 4444444444
Q ss_pred EccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCC
Q 037969 229 CLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCL 279 (300)
Q Consensus 229 ~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~ 279 (300)
++++|.+...+.+..+++|++|++++|.++.+| .+..+++|+.|++++|.
T Consensus 249 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 249 EIGTNQISDINAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp ECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC
T ss_pred ECCCCccCCChhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCc
Confidence 444444444333444444444444444444432 23444444444444444
No 55
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.66 E-value=7.5e-16 Score=142.31 Aligned_cols=155 Identities=23% Similarity=0.301 Sum_probs=128.4
Q ss_pred EeccccccCCCccccCCccEEEeecCCCcccCc-c-ccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969 137 VRNEVVWEWPDEDALKKCSAISLLNSSIHEVSE-E-FECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 214 (300)
..+..+..+|. ...++++.|++++|.+..++. . ..+++|++|++++|.+ ..+++..|.++++|++|++++|.++.
T Consensus 14 c~~~~l~~ip~-~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~i~~~~~~~l~~L~~L~L~~n~l~~ 90 (570)
T 2z63_A 14 CMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIEDGAYQSLSHLSTLILTGNPIQS 90 (570)
T ss_dssp CCSSCCSSCCS-SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred eCCCCccccCC-CccccccEEEccCCccCccChhHhhCCCCceEEECCCCcC--CccCcccccCchhCCEEeCcCCcCCc
Confidence 34445666665 345679999999999976654 3 3899999999999998 77777667899999999999999998
Q ss_pred CC-cccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCC--CchhhcCCCCCCEEeccCCCCccccchhhh
Q 037969 215 LP-SSIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVR--LPGELGQLTKLRLLDLTDCLQLKFIVPNVL 289 (300)
Q Consensus 215 lp-~~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l 289 (300)
+| ..++.+++|++|++++|.+.. + ..++.+++|++|++++|.++. +|..++++++|++|++++|. +..+++..+
T Consensus 91 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~~ 169 (570)
T 2z63_A 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDL 169 (570)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGGG
T ss_pred cCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc-cceecHHHc
Confidence 64 679999999999999999887 4 369999999999999998874 78999999999999999998 666655447
Q ss_pred cCCCCC
Q 037969 290 SSFTRL 295 (300)
Q Consensus 290 ~~L~~L 295 (300)
+.+++|
T Consensus 170 ~~l~~L 175 (570)
T 2z63_A 170 RVLHQM 175 (570)
T ss_dssp HHHHTC
T ss_pred cchhcc
Confidence 777776
No 56
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.66 E-value=7.1e-16 Score=139.59 Aligned_cols=156 Identities=24% Similarity=0.301 Sum_probs=90.6
Q ss_pred cccccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc
Q 037969 140 EVVWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS 217 (300)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~ 217 (300)
..+..+|. ...++++.|++++|.+..++. .+ .+++|+.|++++|.+ ..+++..|.++++|++|++++|.++.+|.
T Consensus 21 ~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i--~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 97 (477)
T 2id5_A 21 KRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97 (477)
T ss_dssp CCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred CCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCcc--CEeChhhhhCCccCCEEECCCCcCCccCc
Confidence 33444443 233456666666666654432 22 566666666666666 44433334666666666666666666554
Q ss_pred c-cccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchhhhcCCC
Q 037969 218 S-IGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFT 293 (300)
Q Consensus 218 ~-i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~ 293 (300)
. ++.+++|++|++++|.+.. +..+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+|...+..++
T Consensus 98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~ 176 (477)
T 2id5_A 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN-LTSIPTEALSHLH 176 (477)
T ss_dssp TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC-CSSCCHHHHTTCT
T ss_pred ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc-CcccChhHhcccC
Confidence 3 4566666666666666655 35566666666666666666544 3346666666666666665 5555554466666
Q ss_pred CCCeee
Q 037969 294 RLEELY 299 (300)
Q Consensus 294 ~L~~L~ 299 (300)
+|+.|+
T Consensus 177 ~L~~L~ 182 (477)
T 2id5_A 177 GLIVLR 182 (477)
T ss_dssp TCCEEE
T ss_pred CCcEEe
Confidence 666654
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.66 E-value=1.1e-15 Score=142.10 Aligned_cols=80 Identities=28% Similarity=0.304 Sum_probs=50.2
Q ss_pred cccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCC
Q 037969 219 IGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLE 296 (300)
Q Consensus 219 i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~ 296 (300)
++.+++|++|++++|.+.. |..++.+++|++|++++|.++.+|..++.+++|+.|++++|. +..+|.. ++.+++|+
T Consensus 250 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~-~~~l~~L~ 327 (597)
T 3oja_B 250 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERN-QPQFDRLE 327 (597)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGG-HHHHTTCS
T ss_pred hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCcc-cccCCCCC
Confidence 4455666666666666655 455666666666666666666666666666666666666666 5566655 55666666
Q ss_pred eeeC
Q 037969 297 ELYM 300 (300)
Q Consensus 297 ~L~l 300 (300)
+|++
T Consensus 328 ~L~L 331 (597)
T 3oja_B 328 NLYL 331 (597)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 6553
No 58
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=8.4e-16 Score=119.41 Aligned_cols=126 Identities=21% Similarity=0.228 Sum_probs=110.0
Q ss_pred cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC--cccccCCCCcCE
Q 037969 172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEI 249 (300)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~ 249 (300)
..++|+.|++.+|.+..+.+|..+ ..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. |..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLT-AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCC-GGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHH-HhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 457899999999998212888764 8899999999999999988 778999999999999999987 455566999999
Q ss_pred EEccCCCCCCCc--hhhcCCCCCCEEeccCCCCccccch---hhhcCCCCCCeeeC
Q 037969 250 LSFLNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFIVP---NVLSSFTRLEELYM 300 (300)
Q Consensus 250 L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~---~~l~~L~~L~~L~l 300 (300)
|++++|.++.+| ..++.+++|++|++++|. +..+|. ..+..+++|++|++
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETT
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecC
Confidence 999999999887 689999999999999998 777776 45899999999875
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.66 E-value=2.2e-15 Score=129.92 Aligned_cols=86 Identities=20% Similarity=0.285 Sum_probs=44.4
Q ss_pred CcccEEEeeCCcCCcC-CcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEecc
Q 037969 200 KTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLT 276 (300)
Q Consensus 200 ~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~ 276 (300)
++|++|++++|.++.+ |..++.+++|++|++++|.+.. +..+..+++|++|++++|.++.+|..+..+++|++|+++
T Consensus 192 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~ 271 (330)
T 1xku_A 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLH 271 (330)
T ss_dssp TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECC
T ss_pred ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECC
Confidence 3444444444444443 3445555555555555555544 234555555555555555555555555555555555555
Q ss_pred CCCCccccch
Q 037969 277 DCLQLKFIVP 286 (300)
Q Consensus 277 ~~~~l~~lp~ 286 (300)
+|. ++.+|.
T Consensus 272 ~N~-i~~~~~ 280 (330)
T 1xku_A 272 NNN-ISAIGS 280 (330)
T ss_dssp SSC-CCCCCT
T ss_pred CCc-CCccCh
Confidence 555 444443
No 60
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.65 E-value=2.5e-15 Score=137.47 Aligned_cols=161 Identities=17% Similarity=0.288 Sum_probs=132.8
Q ss_pred EEEeccccccCCCccccCCccEEEeecCCCcc-cCccc-cCCCccEEecccCccccccCch--hHHhcCCcccEEEeeCC
Q 037969 135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHE-VSEEF-ECLQLEFLHISQNTFVEVNIPD--NIFKGMKTLRVIDLTRM 210 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~~l~~--~~~~~l~~L~~L~l~~~ 210 (300)
..+.+..+...+....+++++.|++++|.+.. +|..+ .+++|+.|++++|.+ ..++. ..+..+++|++|++++|
T Consensus 307 L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 307 FTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL--KELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp EEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCC--CBHHHHHHHHTTCTTCCEEECCSS
T ss_pred EEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCcc--CccccchHHHhhCCCCCEEECCCC
Confidence 34444444444322567889999999999954 56555 899999999999998 64432 33489999999999999
Q ss_pred cCCc-CCcc-cccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccch
Q 037969 211 RLFS-LPSS-IGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVP 286 (300)
Q Consensus 211 ~~~~-lp~~-i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 286 (300)
.++. +|.. +..+++|++|++++|.+.. |..+. ++|++|++++|.++.+|..+..+++|++|++++|. +..+|.
T Consensus 385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~ 461 (520)
T 2z7x_B 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ-LKSVPD 461 (520)
T ss_dssp CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCCT
T ss_pred cCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc-CCccCH
Confidence 9998 8865 7889999999999999876 55443 79999999999999999999999999999999998 788998
Q ss_pred hhhcCCCCCCeeeC
Q 037969 287 NVLSSFTRLEELYM 300 (300)
Q Consensus 287 ~~l~~L~~L~~L~l 300 (300)
..+..+++|++|++
T Consensus 462 ~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 462 GIFDRLTSLQKIWL 475 (520)
T ss_dssp TTTTTCTTCCEEEC
T ss_pred HHhccCCcccEEEC
Confidence 66889999999875
No 61
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.65 E-value=3.7e-16 Score=118.98 Aligned_cols=122 Identities=21% Similarity=0.276 Sum_probs=57.4
Q ss_pred CccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEc
Q 037969 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSF 252 (300)
Q Consensus 175 ~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l 252 (300)
+++.|++.+|.+..+.+|..+ ..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. |..++.+++|++|++
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLT-DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCC-TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred cCeEEEccCCcCChhHHHHHH-hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 344444444444001344322 4445555555555555444 344455555555555555444 233334555555555
Q ss_pred cCCCCCCCc--hhhcCCCCCCEEeccCCCCccccch---hhhcCCCCCCeee
Q 037969 253 LNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFIVP---NVLSSFTRLEELY 299 (300)
Q Consensus 253 ~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~---~~l~~L~~L~~L~ 299 (300)
++|.++.+| ..++.+++|++|++++|. +..+|. ..++.+++|+.|+
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEET
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCccccc
Confidence 555555443 445555555555555554 444443 2345555555554
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=7.6e-16 Score=132.11 Aligned_cols=144 Identities=15% Similarity=0.130 Sum_probs=96.0
Q ss_pred CCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-Cccc-ccCCCCcEEE
Q 037969 152 KKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSI-GLLANLQTLC 229 (300)
Q Consensus 152 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i-~~l~~L~~L~ 229 (300)
++++.|++++|.+..++.. .+++|+.|++.+|.+ ..+++..+..+++|++|++++|.++.+ |..+ +.+++|++|+
T Consensus 99 ~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~ 175 (317)
T 3o53_A 99 PSIETLHAANNNISRVSCS-RGQGKKNIYLANNKI--TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (317)
T ss_dssp TTCCEEECCSSCCSEEEEC-CCSSCEEEECCSSCC--CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECCCCccCCcCcc-ccCCCCEEECCCCCC--CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEE
Confidence 5566666666666444322 356677777777777 555554456677777777777777764 3444 3567777777
Q ss_pred ccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 230 LDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 230 l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
+++|.+...+....+++|++|++++|.++.+|..+..+++|++|++++|. +..+|.. +..+++|+.|++
T Consensus 176 L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~-~~~l~~L~~L~l 244 (317)
T 3o53_A 176 LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKA-LRFSQNLEHFDL 244 (317)
T ss_dssp CTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTT-CCCCTTCCEEEC
T ss_pred CCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhH-hhcCCCCCEEEc
Confidence 77777766333445777777777777777777777777777777777776 6667765 677777777664
No 63
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=3.8e-16 Score=149.89 Aligned_cols=147 Identities=16% Similarity=0.240 Sum_probs=97.4
Q ss_pred ccCCccEEEeecCCC-cccCccc-cCCCccEEecccCc-cccc-cCchhHHhcCC-------cccEEEeeCCcCCcCCc-
Q 037969 150 ALKKCSAISLLNSSI-HEVSEEF-ECLQLEFLHISQNT-FVEV-NIPDNIFKGMK-------TLRVIDLTRMRLFSLPS- 217 (300)
Q Consensus 150 ~~~~l~~L~l~~~~~-~~~~~~~-~~~~L~~L~l~~~~-~~~~-~l~~~~~~~l~-------~L~~L~l~~~~~~~lp~- 217 (300)
.+++++.|++++|.+ ..+|..+ ++++|+.|++++|. + .+ .+|..+ ..+. +|++|++++|.++.+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~l-sg~~iP~~i-~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGI-SAAQLKADW-TRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTS-CHHHHHHHH-HHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCc-ccccchHHH-HhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 566777777777665 5566544 67777777777776 4 23 466554 3443 77777777777777776
Q ss_pred -ccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCC-CCEEeccCCCCccccchhhhcCCCC-
Q 037969 218 -SIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTK-LRLLDLTDCLQLKFIVPNVLSSFTR- 294 (300)
Q Consensus 218 -~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~-L~~L~l~~~~~l~~lp~~~l~~L~~- 294 (300)
.++.+++|++|++++|.+...+.++.+++|+.|++++|.++.+|..++++++ |+.|++++|. +..+|.. ++.++.
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~-~~~~~~~ 644 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNI-FNAKSVY 644 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCSCCSC-CCTTCSS
T ss_pred hhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CCcCchh-hhccccC
Confidence 6777777777777777766622677777777777777777777777777777 7777777776 5566654 555443
Q ss_pred -CCeeeC
Q 037969 295 -LEELYM 300 (300)
Q Consensus 295 -L~~L~l 300 (300)
|+.|++
T Consensus 645 ~L~~L~L 651 (876)
T 4ecn_A 645 VMGSVDF 651 (876)
T ss_dssp CEEEEEC
T ss_pred CCCEEEC
Confidence 666653
No 64
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.64 E-value=3.7e-15 Score=140.65 Aligned_cols=160 Identities=21% Similarity=0.274 Sum_probs=112.5
Q ss_pred EeccccccCCCccccCCccEEEeecCCCcccCcc-c-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969 137 VRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 214 (300)
..+..+..+|. ...++++.|++++|.+..++.. + .+++|++|++++|.+ ..+++..+.++++|++|++++|.++.
T Consensus 11 cs~~~L~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~L~~n~l~~ 87 (680)
T 1ziw_A 11 CSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI--SKLEPELCQKLPMLKVLNLQHNELSQ 87 (680)
T ss_dssp CCSSCCSSCCS-CSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCC--CCCCTTHHHHCTTCCEEECCSSCCCC
T ss_pred CCCCCcccccc-ccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCcc--CccCHHHHhcccCcCEEECCCCccCc
Confidence 33444555664 2346788888888888666643 3 778888888888877 56655556788888888888888888
Q ss_pred CCc-ccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchhhhc
Q 037969 215 LPS-SIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLS 290 (300)
Q Consensus 215 lp~-~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~l~ 290 (300)
+|+ .++.+++|++|++++|.+.. |..++.+++|++|++++|.++.. |..++++++|++|++++|. +..+++..++
T Consensus 88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 166 (680)
T 1ziw_A 88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELD 166 (680)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHG
T ss_pred cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhh
Confidence 765 47788888888888888776 35677888888888888877644 4457778888888888877 5555543333
Q ss_pred --CCCCCCeeeC
Q 037969 291 --SFTRLEELYM 300 (300)
Q Consensus 291 --~L~~L~~L~l 300 (300)
.+++|++|++
T Consensus 167 ~~~~~~L~~L~L 178 (680)
T 1ziw_A 167 IFANSSLKKLEL 178 (680)
T ss_dssp GGTTCEESEEEC
T ss_pred ccccccccEEEC
Confidence 3466766654
No 65
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.64 E-value=1.5e-15 Score=136.58 Aligned_cols=153 Identities=27% Similarity=0.411 Sum_probs=124.3
Q ss_pred EEeccccccCCCccccCCccEEEeecCCCccc-Cccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC
Q 037969 136 LVRNEVVWEWPDEDALKKCSAISLLNSSIHEV-SEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF 213 (300)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 213 (300)
...+..+..+|. ..+++++|++++|.+..+ |..+ .+++|++|++++|.+ ...+++..|.++++|++|++++|.++
T Consensus 16 ~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~-~~~i~~~~~~~l~~L~~L~Ls~n~l~ 92 (455)
T 3v47_A 16 ICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP-GLVIRNNTFRGLSSLIILKLDYNQFL 92 (455)
T ss_dssp ECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST-TCEECTTTTTTCTTCCEEECTTCTTC
T ss_pred CcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc-cceECcccccccccCCEEeCCCCccC
Confidence 344555667776 457899999999999665 4444 899999999999987 23666666689999999999999999
Q ss_pred cC-CcccccCCCCcEEEccCCCCCC--ccc--ccCCCCcCEEEccCCCCCCC-chh-hcCCCCCCEEeccCCCCccccch
Q 037969 214 SL-PSSIGLLANLQTLCLDQSMLGD--IAI--IGKLKNLEILSFLNSDIVRL-PGE-LGQLTKLRLLDLTDCLQLKFIVP 286 (300)
Q Consensus 214 ~l-p~~i~~l~~L~~L~l~~~~l~~--p~~--~~~l~~L~~L~l~~~~l~~l-p~~-~~~l~~L~~L~l~~~~~l~~lp~ 286 (300)
.+ |..++.+++|++|++++|.+.. |.. ++.+++|++|++++|.++.+ |.. ++++++|++|++++|. +..+++
T Consensus 93 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~ 171 (455)
T 3v47_A 93 QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICE 171 (455)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCT
T ss_pred ccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccCh
Confidence 85 7889999999999999999987 544 89999999999999999876 555 8899999999999998 444433
Q ss_pred hhhcCC
Q 037969 287 NVLSSF 292 (300)
Q Consensus 287 ~~l~~L 292 (300)
..+..+
T Consensus 172 ~~l~~l 177 (455)
T 3v47_A 172 EDLLNF 177 (455)
T ss_dssp TTSGGG
T ss_pred hhhhcc
Confidence 324443
No 66
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.64 E-value=4e-15 Score=139.33 Aligned_cols=125 Identities=15% Similarity=0.163 Sum_probs=87.5
Q ss_pred CCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccC--------CCCcEEEccCCCCCC-ccccc-
Q 037969 173 CLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLL--------ANLQTLCLDQSMLGD-IAIIG- 242 (300)
Q Consensus 173 ~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l--------~~L~~L~l~~~~l~~-p~~~~- 242 (300)
+++|+.|++++|.+ ..+|..++..+++|++|++++|.++.+|..+... ++|++|++++|.+.. |..+.
T Consensus 432 ~~~L~~L~Ls~N~l--~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 509 (636)
T 4eco_A 432 GINVSSINLSNNQI--SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509 (636)
T ss_dssp CCCEEEEECCSSCC--CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred CCCCCEEECcCCcc--CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence 44666777777776 5677766666777777777777777766543322 277777777777776 66665
Q ss_pred -CCCCcCEEEccCCCCCCCchhhcCCCCCCEEecc------CCCCccccchhhhcCCCCCCeeeC
Q 037969 243 -KLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLT------DCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 243 -~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~------~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
.+++|++|++++|.++.+|..++++++|++|+++ +|...+.+|.. ++.+++|++|++
T Consensus 510 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~-l~~l~~L~~L~L 573 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG-ITLCPSLTQLQI 573 (636)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT-GGGCSSCCEEEC
T ss_pred ccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHH-HhcCCCCCEEEC
Confidence 7777777887777777777777777777777773 45545666665 777777777764
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=9.9e-16 Score=138.98 Aligned_cols=144 Identities=15% Similarity=0.119 Sum_probs=99.6
Q ss_pred CCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcccc-cCCCCcEEE
Q 037969 152 KKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIG-LLANLQTLC 229 (300)
Q Consensus 152 ~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~-~l~~L~~L~ 229 (300)
++++.|++++|.+..++.. .+++|+.|++++|.+ ..+++..++.+++|++|++++|.++. .|..+. .+++|++|+
T Consensus 99 ~~L~~L~L~~N~l~~~~~~-~l~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~ 175 (487)
T 3oja_A 99 PSIETLHAANNNISRVSCS-RGQGKKNIYLANNKI--TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175 (487)
T ss_dssp TTCCEEECCSSCCCCEEEC-CCSSCEEEECCSSCC--CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEE
T ss_pred CCcCEEECcCCcCCCCCcc-ccCCCCEEECCCCCC--CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEe
Confidence 5566666666666444432 456777777777777 55544334677777788887777776 355554 677777888
Q ss_pred ccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 230 LDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 230 l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
+++|.+...+....+++|++|++++|.++.+|+.++.+++|+.|++++|. +..+|.. ++.+++|+.|++
T Consensus 176 Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~-l~~l~~L~~L~l 244 (487)
T 3oja_A 176 LQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKA-LRFSQNLEHFDL 244 (487)
T ss_dssp CTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTT-CCCCTTCCEEEC
T ss_pred cCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-Ccccchh-hccCCCCCEEEc
Confidence 77777776444446777778888777777777777777778888887777 6667765 777777777764
No 68
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.64 E-value=3.1e-15 Score=139.32 Aligned_cols=159 Identities=18% Similarity=0.239 Sum_probs=128.3
Q ss_pred EeccccccCCCccccCCccEEEeecCCCcccC-ccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969 137 VRNEVVWEWPDEDALKKCSAISLLNSSIHEVS-EEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 214 (300)
..+..+..+|. ...+.++.|++++|.+..++ ..+ .+++|++|++++|.+ ..+++..|.++++|++|++++|.++.
T Consensus 19 c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~ 95 (606)
T 3t6q_A 19 CENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI--YWIHEDTFQSQHRLDTLVLTANPLIF 95 (606)
T ss_dssp CTTSCCSSCCT-TSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC--CEECTTTTTTCTTCCEEECTTCCCSE
T ss_pred CCCCCcccCcC-CCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCcc--ceeChhhccCccccCeeeCCCCcccc
Confidence 34445566665 34567899999999997664 344 899999999999988 66655556899999999999999988
Q ss_pred C-CcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCCccccchhhhc
Q 037969 215 L-PSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLS 290 (300)
Q Consensus 215 l-p~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~l~ 290 (300)
+ |..++.+++|++|++++|.+.. +..++.+++|++|++++|.++.++ +.+..+++|++|++++|. +..+++..++
T Consensus 96 ~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~ 174 (606)
T 3t6q_A 96 MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA-IHYLSKEDMS 174 (606)
T ss_dssp ECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC-CCEECHHHHH
T ss_pred cChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCc-ccccChhhhh
Confidence 5 7789999999999999999887 678899999999999999988763 344559999999999998 6666555588
Q ss_pred CCCCCC--eee
Q 037969 291 SFTRLE--ELY 299 (300)
Q Consensus 291 ~L~~L~--~L~ 299 (300)
.+++|+ +|+
T Consensus 175 ~l~~L~~l~L~ 185 (606)
T 3t6q_A 175 SLQQATNLSLN 185 (606)
T ss_dssp TTTTCCSEEEE
T ss_pred hhcccceeEEe
Confidence 999988 554
No 69
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.63 E-value=7.7e-15 Score=126.46 Aligned_cols=159 Identities=21% Similarity=0.322 Sum_probs=109.0
Q ss_pred EeccccccCCCccccCCccEEEeecCCCcccCcc--ccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969 137 VRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEE--FECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 214 (300)
+..+.+..+|.. ..++++.|++++|.+..++.. ..+++|+.|++.+|.+.........+..+++|++|++++|.++.
T Consensus 107 Ls~n~l~~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 107 LSKNQLKELPEK-MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp CCSSCCSBCCSS-CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCCCcCCccChh-hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 333344444432 225566666666666544432 26667777777766651111223334667777777777777777
Q ss_pred CCcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCccccchhhhcC
Q 037969 215 LPSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCLQLKFIVPNVLSS 291 (300)
Q Consensus 215 lp~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~l~~ 291 (300)
+|..+. ++|++|++++|.+.. |..+..+++|++|++++|.++.++. .+..+++|++|++++|. +..+|.. +..
T Consensus 186 l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~-l~~ 261 (330)
T 1xku_A 186 IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGG-LAD 261 (330)
T ss_dssp CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSCCTT-TTT
T ss_pred CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccCChh-hcc
Confidence 766543 678888888888776 5778888999999999998886655 68888999999999998 7788876 888
Q ss_pred CCCCCeeeC
Q 037969 292 FTRLEELYM 300 (300)
Q Consensus 292 L~~L~~L~l 300 (300)
+++|++|++
T Consensus 262 l~~L~~L~l 270 (330)
T 1xku_A 262 HKYIQVVYL 270 (330)
T ss_dssp CSSCCEEEC
T ss_pred CCCcCEEEC
Confidence 899988875
No 70
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.63 E-value=7.1e-16 Score=141.93 Aligned_cols=155 Identities=21% Similarity=0.301 Sum_probs=91.8
Q ss_pred cccccCCCccccCCccEEEeecCCCcccC-ccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc
Q 037969 140 EVVWEWPDEDALKKCSAISLLNSSIHEVS-EEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS 217 (300)
Q Consensus 140 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~ 217 (300)
..+..+|. ...++++.|++++|.+..++ ..+ .+++|++|++++|.+ ..+++..|..+++|++|++++|.++.+|+
T Consensus 15 ~~l~~ip~-~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 91 (549)
T 2z81_A 15 RSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91 (549)
T ss_dssp SCCSSCCS-CCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTSCCCSCCH
T ss_pred Cccccccc-cCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCc--CccChhhccccccCCEEECCCCccCccCH
Confidence 34444554 22356677777777665443 223 666777777777666 55554444666677777777776666544
Q ss_pred c-cccCCCCcEEEccCCCCCC---cccccCCCCcCEEEccCCC-CCCCc-hhhcCCCCCCEEeccCCCCccccchhhhcC
Q 037969 218 S-IGLLANLQTLCLDQSMLGD---IAIIGKLKNLEILSFLNSD-IVRLP-GELGQLTKLRLLDLTDCLQLKFIVPNVLSS 291 (300)
Q Consensus 218 ~-i~~l~~L~~L~l~~~~l~~---p~~~~~l~~L~~L~l~~~~-l~~lp-~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~ 291 (300)
. ++.+++|++|++++|.+.. |..++.+++|++|++++|. +..+| ..++++++|++|++++|...+..|.. ++.
T Consensus 92 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~ 170 (549)
T 2z81_A 92 SWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKS 170 (549)
T ss_dssp HHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTT
T ss_pred HHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhc
Confidence 3 6666777777777766653 4556666677777776664 45554 34666666666666666633334433 555
Q ss_pred CCCCCee
Q 037969 292 FTRLEEL 298 (300)
Q Consensus 292 L~~L~~L 298 (300)
+++|++|
T Consensus 171 l~~L~~L 177 (549)
T 2z81_A 171 IRDIHHL 177 (549)
T ss_dssp CSEEEEE
T ss_pred cccCceE
Confidence 5544444
No 71
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.63 E-value=3.5e-15 Score=128.79 Aligned_cols=156 Identities=18% Similarity=0.303 Sum_probs=67.5
Q ss_pred eccccccCCCccccCCccEEEeecCCCcccCcc-c-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC
Q 037969 138 RNEVVWEWPDEDALKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL 215 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l 215 (300)
..+.+..+|... .++++.|++++|.+..++.. + .+++|+.|++.+|.+.....+...+..+ +|++|++++|.++.+
T Consensus 110 ~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 110 SKNHLVEIPPNL-PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp CSSCCCSCCSSC-CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CCCcCCccCccc-cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 333344444322 25566666666666555442 2 5666666666666551001111112222 333333333333332
Q ss_pred CcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCccccchhhhcCC
Q 037969 216 PSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCLQLKFIVPNVLSSF 292 (300)
Q Consensus 216 p~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L 292 (300)
|..+. ++|++|++++|.+.. +..+..+++|++|++++|.++.++. .++.+++|++|++++|. +..+|.. ++.+
T Consensus 188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~-l~~l 263 (332)
T 2ft3_A 188 PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAG-LPDL 263 (332)
T ss_dssp CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTT-GGGC
T ss_pred Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc-CeecChh-hhcC
Confidence 22211 334444444444443 2344444455555555544444332 34444555555555444 4444443 4444
Q ss_pred CCCCeee
Q 037969 293 TRLEELY 299 (300)
Q Consensus 293 ~~L~~L~ 299 (300)
++|++|+
T Consensus 264 ~~L~~L~ 270 (332)
T 2ft3_A 264 KLLQVVY 270 (332)
T ss_dssp TTCCEEE
T ss_pred ccCCEEE
Confidence 4444444
No 72
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=7.2e-15 Score=141.08 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=94.6
Q ss_pred CCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccC--------CCCcEEEccCCCCCC-ccccc--
Q 037969 174 LQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLL--------ANLQTLCLDQSMLGD-IAIIG-- 242 (300)
Q Consensus 174 ~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l--------~~L~~L~l~~~~l~~-p~~~~-- 242 (300)
++|+.|++++|.+ ..+|..++..+++|+.|++++|.++.+|..+... ++|++|++++|.+.. |..+.
T Consensus 673 ~~L~~L~Ls~N~L--~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~ 750 (876)
T 4ecn_A 673 INASTVTLSYNEI--QKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRAT 750 (876)
T ss_dssp CCEEEEECCSSCC--CSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTT
T ss_pred CCcCEEEccCCcC--CccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhc
Confidence 3677777777777 6777777667888888888888888777665443 278888888888877 77776
Q ss_pred CCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccC------CCCccccchhhhcCCCCCCeeeC
Q 037969 243 KLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTD------CLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 243 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~------~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
.+++|+.|++++|.++.+|..++++++|+.|++++ |...+.+|.. ++.+++|++|+|
T Consensus 751 ~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~-l~~L~~L~~L~L 813 (876)
T 4ecn_A 751 TLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG-ITTCPSLIQLQI 813 (876)
T ss_dssp TCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT-GGGCSSCCEEEC
T ss_pred cCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHH-HhcCCCCCEEEC
Confidence 78888888888888888888888888888888865 5555667765 778888888765
No 73
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.63 E-value=3e-15 Score=143.22 Aligned_cols=147 Identities=24% Similarity=0.319 Sum_probs=120.1
Q ss_pred cCCccEEEeecCCCc-ccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcccccCCCCcE
Q 037969 151 LKKCSAISLLNSSIH-EVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQT 227 (300)
Q Consensus 151 ~~~l~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~ 227 (300)
.++++.|++.+|.+. .+|..+ .+++|+.|++++|.+ .+.+|..+ ..+++|++|++++|.++. +|..++.+++|++
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL-SGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE-ESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcc-cCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 556778888887773 566555 788888898888887 24566554 788889999999988885 6888888899999
Q ss_pred EEccCCCCCC--cccccCCCCcCEEEccCCCCC-CCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 228 LCLDQSMLGD--IAIIGKLKNLEILSFLNSDIV-RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 228 L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
|++++|.+.. |..++.+++|++|++++|.++ .+|..++++++|++|++++|...+.+|.. ++.+++|+.|++
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~L~~L~L 545 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE-LGDCRSLIWLDL 545 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGGCTTCCEEEC
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH-HcCCCCCCEEEC
Confidence 9999998875 778888999999999999887 78888899999999999999866678876 888999988875
No 74
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.62 E-value=2.5e-15 Score=131.27 Aligned_cols=142 Identities=18% Similarity=0.241 Sum_probs=123.0
Q ss_pred cEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHh-cCCcccEEEeeCCcCCcCC-cccccCCCCcEEEccC
Q 037969 155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFK-GMKTLRVIDLTRMRLFSLP-SSIGLLANLQTLCLDQ 232 (300)
Q Consensus 155 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~-~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~ 232 (300)
+.+++.++.+..+|..+ .+.++.|++++|.+ ..++...|. .+++|++|++++|.++.+| ..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l--~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSCC--CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCCC--CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 57889999998888754 34689999999999 888887766 8999999999999999975 5699999999999999
Q ss_pred CCCCC-c-ccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchhhh---cCCCCCCeeeC
Q 037969 233 SMLGD-I-AIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVL---SSFTRLEELYM 300 (300)
Q Consensus 233 ~~l~~-p-~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~l---~~L~~L~~L~l 300 (300)
|.+.. + ..+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+|...+ +.+++|+.|+|
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L 170 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDL 170 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEEC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEEC
Confidence 99988 4 5689999999999999999976 5679999999999999999 888998755 67999999875
No 75
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.62 E-value=1.6e-15 Score=118.76 Aligned_cols=127 Identities=17% Similarity=0.255 Sum_probs=107.3
Q ss_pred cccCCccEEEeecCCCcccCccccCC-CccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCccc-ccCCCCc
Q 037969 149 DALKKCSAISLLNSSIHEVSEEFECL-QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSI-GLLANLQ 226 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~ 226 (300)
....+++.|++++|.+..++....+. +|+.|++++|.+ ..++ . +..+++|++|++++|.++.+|+.+ +.+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l--~~~~-~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI--RKLD-G-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC--CEEC-C-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCC--Cccc-c-cccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 44667899999999998887766554 999999999988 6663 3 478899999999999999887654 8899999
Q ss_pred EEEccCCCCCC-cc--cccCCCCcCEEEccCCCCCCCchh----hcCCCCCCEEeccCCC
Q 037969 227 TLCLDQSMLGD-IA--IIGKLKNLEILSFLNSDIVRLPGE----LGQLTKLRLLDLTDCL 279 (300)
Q Consensus 227 ~L~l~~~~l~~-p~--~~~~l~~L~~L~l~~~~l~~lp~~----~~~l~~L~~L~l~~~~ 279 (300)
+|++++|.+.. |. .++.+++|++|++++|.++.+|.. ++.+++|+.|++++|.
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999887 54 788999999999999998888875 8899999999998887
No 76
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.62 E-value=3.3e-15 Score=139.89 Aligned_cols=144 Identities=19% Similarity=0.203 Sum_probs=124.5
Q ss_pred cCCccEEEeecCCCcccCccc--cCCCccEEecccCccccccCchhHHhcCC-------cccEEEeeCCcCCcCCcccc-
Q 037969 151 LKKCSAISLLNSSIHEVSEEF--ECLQLEFLHISQNTFVEVNIPDNIFKGMK-------TLRVIDLTRMRLFSLPSSIG- 220 (300)
Q Consensus 151 ~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~l~~~~~~~l~-------~L~~L~l~~~~~~~lp~~i~- 220 (300)
..+++.|++++|.+..+|... .+++|+.|++++|.+ ..+|..++.... +|++|++++|.++.+|..+.
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l--~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 509 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNML--TEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCC--SBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCC--CCcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence 447888888888888777754 589999999999999 788887755443 99999999999999999987
Q ss_pred -cCCCCcEEEccCCCCCC-cccccCCCCcCEEEccC------CCC-CCCchhhcCCCCCCEEeccCCCCccccchhhhcC
Q 037969 221 -LLANLQTLCLDQSMLGD-IAIIGKLKNLEILSFLN------SDI-VRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSS 291 (300)
Q Consensus 221 -~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~------~~l-~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~ 291 (300)
.+++|++|++++|.+.. |..++.+++|++|++++ |.+ ..+|..++++++|++|++++|. ++.+|.. +.
T Consensus 510 ~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~ip~~-~~- 586 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND-IRKVNEK-IT- 586 (636)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC-CCBCCSC-CC-
T ss_pred ccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCc-CCccCHh-Hh-
Confidence 99999999999999998 89999999999999954 544 4889999999999999999999 6999986 44
Q ss_pred CCCCCeeeC
Q 037969 292 FTRLEELYM 300 (300)
Q Consensus 292 L~~L~~L~l 300 (300)
++|++|++
T Consensus 587 -~~L~~L~L 594 (636)
T 4eco_A 587 -PNISVLDI 594 (636)
T ss_dssp -TTCCEEEC
T ss_pred -CcCCEEEC
Confidence 78998875
No 77
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.62 E-value=3.7e-15 Score=138.79 Aligned_cols=143 Identities=17% Similarity=0.246 Sum_probs=126.1
Q ss_pred ccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEEccC
Q 037969 154 CSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQ 232 (300)
Q Consensus 154 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 232 (300)
-+.++.+++.+..+|.... +++++|++++|.+ ..+++..|.++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNPL--KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEccCCCcccCCCCCC-CCcCEEECCCCCc--CEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 3578888888888887554 7899999999999 777776679999999999999999996 66799999999999999
Q ss_pred CCCCC--cccccCCCCcCEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCCcc-ccchhhhcCCCCCCeeeC
Q 037969 233 SMLGD--IAIIGKLKNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQLK-FIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 233 ~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~l~-~lp~~~l~~L~~L~~L~l 300 (300)
|.+.. |..++.+++|++|++++|.++.+| ..++++++|++|++++|.... .+|.. ++++++|++|++
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~L 160 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDL 160 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEEC
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEc
Confidence 99887 688999999999999999999877 679999999999999998433 46876 999999999975
No 78
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.62 E-value=9.2e-15 Score=135.03 Aligned_cols=161 Identities=17% Similarity=0.249 Sum_probs=132.0
Q ss_pred EEEeccccccCCCccccCCccEEEeecCCCcc-cCccc-cCCCccEEecccCccccccCch--hHHhcCCcccEEEeeCC
Q 037969 135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHE-VSEEF-ECLQLEFLHISQNTFVEVNIPD--NIFKGMKTLRVIDLTRM 210 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~-~~~~~-~~~~L~~L~l~~~~~~~~~l~~--~~~~~l~~L~~L~l~~~ 210 (300)
....+..+...+....+++++.|++++|.+.. +|..+ .+++|+.|++.+|.+ ..++. ..+..+++|++|++++|
T Consensus 336 L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL--KNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp EEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCC--CBTTHHHHTTTTCTTCCEEECTTS
T ss_pred EEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCc--CCcccchhhhcCCCCCCEEECCCC
Confidence 33444444433322567889999999999954 56555 899999999999998 66553 23478999999999999
Q ss_pred cCCc-CCcc-cccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccch
Q 037969 211 RLFS-LPSS-IGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVP 286 (300)
Q Consensus 211 ~~~~-lp~~-i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 286 (300)
.++. +|.. +..+++|++|++++|.+.. |..+. ++|++|++++|.++.+|..+..+++|++|++++|. +..+|.
T Consensus 414 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~ 490 (562)
T 3a79_B 414 SLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPD 490 (562)
T ss_dssp CCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCT
T ss_pred cCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCH
Confidence 9998 7764 7889999999999999876 44443 79999999999999999999999999999999999 788998
Q ss_pred hhhcCCCCCCeeeC
Q 037969 287 NVLSSFTRLEELYM 300 (300)
Q Consensus 287 ~~l~~L~~L~~L~l 300 (300)
..+..+++|+.|++
T Consensus 491 ~~~~~l~~L~~L~l 504 (562)
T 3a79_B 491 GVFDRLTSLQYIWL 504 (562)
T ss_dssp TSTTTCTTCCCEEC
T ss_pred HHHhcCCCCCEEEe
Confidence 66889999999875
No 79
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=7.4e-16 Score=128.66 Aligned_cols=141 Identities=19% Similarity=0.254 Sum_probs=122.6
Q ss_pred ccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEE
Q 037969 150 ALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLC 229 (300)
Q Consensus 150 ~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 229 (300)
.+.++..+.+..+.+..++....+++|+.|++.+|.+ ..++. +..+++|++|++++|.++.+|. ++.+++|++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i--~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNI--QSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCC--CCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEE
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCc--ccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEE
Confidence 4555667778888887777666999999999999999 78883 4889999999999999999887 99999999999
Q ss_pred ccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 230 LDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 230 l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
+++|.+...+.+.. ++|++|++++|.++.+| .++.+++|+.|++++|. +..+|. ++.+++|++|++
T Consensus 92 L~~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~~--l~~l~~L~~L~L 157 (263)
T 1xeu_A 92 VNRNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIVM--LGFLSKLEVLDL 157 (263)
T ss_dssp CCSSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCGG--GGGCTTCCEEEC
T ss_pred CCCCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCChH--HccCCCCCEEEC
Confidence 99999988333444 99999999999999986 69999999999999999 788874 899999999975
No 80
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.62 E-value=1.6e-14 Score=130.46 Aligned_cols=76 Identities=28% Similarity=0.396 Sum_probs=30.9
Q ss_pred ccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969 220 GLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299 (300)
Q Consensus 220 ~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 299 (300)
+.+++|++|++++|.+.....+..+++|+.|++++|.++.++ .+.++++|+.|++++|. +...++ +..+++|+.|+
T Consensus 306 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~ 381 (466)
T 1o6v_A 306 SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQ-ISDLTP--LANLTRITQLG 381 (466)
T ss_dssp GGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCBCGG--GTTCTTCCEEE
T ss_pred cCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCc-cCccch--hhcCCCCCEEe
Confidence 333444444444444333111334444444444444444332 34444444444444444 222222 34444444443
No 81
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.61 E-value=7e-15 Score=135.30 Aligned_cols=162 Identities=20% Similarity=0.275 Sum_probs=123.1
Q ss_pred EEEeccccccCCCc--cccCCccEEEeecCCCcc-cCc----cccCCCccEEecccCccccccCch--hHHhcCCcccEE
Q 037969 135 FLVRNEVVWEWPDE--DALKKCSAISLLNSSIHE-VSE----EFECLQLEFLHISQNTFVEVNIPD--NIFKGMKTLRVI 205 (300)
Q Consensus 135 ~~~~~~~~~~~~~~--~~~~~l~~L~l~~~~~~~-~~~----~~~~~~L~~L~l~~~~~~~~~l~~--~~~~~l~~L~~L 205 (300)
..+.+..+..+|.. ..+++++.|++++|.+.. +|. ...+++|+.|++++|.+ ..++. ..+..+++|++|
T Consensus 315 L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~~~l~~L~~L 392 (549)
T 2z81_A 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL--RSMQKTGEILLTLKNLTSL 392 (549)
T ss_dssp EEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC--CCHHHHHHHGGGCTTCCEE
T ss_pred EEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc--cccccchhhhhcCCCCCEE
Confidence 33444455555543 357888888988888843 322 23678888999988888 66653 445788899999
Q ss_pred EeeCCcCCcCCcccccCCCCcEEEccCCCCCC-cccc------------------cCCCCcCEEEccCCCCCCCchhhcC
Q 037969 206 DLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD-IAII------------------GKLKNLEILSFLNSDIVRLPGELGQ 266 (300)
Q Consensus 206 ~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-p~~~------------------~~l~~L~~L~l~~~~l~~lp~~~~~ 266 (300)
++++|.++.+|..++.+++|++|++++|.+.. |..+ +.+++|++|++++|+++.+|. .+.
T Consensus 393 ~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~ 471 (549)
T 2z81_A 393 DISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASL 471 (549)
T ss_dssp ECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGG
T ss_pred ECCCCCCccCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-ccc
Confidence 99999888888888888888888888887765 3222 368889999999999998987 577
Q ss_pred CCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 267 LTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 267 l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
+++|++|++++|. +..+|+..++.+++|++|++
T Consensus 472 l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l 504 (549)
T 2z81_A 472 FPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWL 504 (549)
T ss_dssp CTTCCEEECCSSC-CCCCCTTGGGGCTTCCEEEC
T ss_pred CccCCEEecCCCc-cCCcCHHHHhcCcccCEEEe
Confidence 8999999999998 66777655889999999875
No 82
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.4e-15 Score=115.75 Aligned_cols=123 Identities=25% Similarity=0.308 Sum_probs=109.7
Q ss_pred cCCccEEEeecCCCc--ccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CCcccccCCCCc
Q 037969 151 LKKCSAISLLNSSIH--EVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQ 226 (300)
Q Consensus 151 ~~~l~~L~l~~~~~~--~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~ 226 (300)
.++++.|++++|.+. .+|..+ .+++|+.|++++|.+ ..+ .. +..+++|++|++++|.++. +|..++.+++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l--~~~-~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSI-AN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCC--CCC-TT-CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCC--CCc-hh-hhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 467999999999997 788775 899999999999998 666 33 5889999999999999998 788888899999
Q ss_pred EEEccCCCCCC-c--ccccCCCCcCEEEccCCCCCCCch----hhcCCCCCCEEeccC
Q 037969 227 TLCLDQSMLGD-I--AIIGKLKNLEILSFLNSDIVRLPG----ELGQLTKLRLLDLTD 277 (300)
Q Consensus 227 ~L~l~~~~l~~-p--~~~~~l~~L~~L~l~~~~l~~lp~----~~~~l~~L~~L~l~~ 277 (300)
+|++++|.+.. + ..++.+++|++|++++|.++.+|. .++.+++|++|++++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999988 4 889999999999999999998876 689999999999863
No 83
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.61 E-value=3.8e-15 Score=139.07 Aligned_cols=140 Identities=20% Similarity=0.338 Sum_probs=119.9
Q ss_pred EEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC-cccccCCCCcEEEccCCC
Q 037969 156 AISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQTLCLDQSM 234 (300)
Q Consensus 156 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~ 234 (300)
..+.++..+.++|..+. ++++.|++++|.+ ..+|+..|.++++|++|+|++|.++.+| ..|+++++|++|+|++|.
T Consensus 35 ~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i--~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSSCCSSSC-TTCCEEECTTSCC--CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCccCCCCC-cCCCEEEeeCCCC--CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 44555566778886442 4799999999999 8898877799999999999999999985 468999999999999999
Q ss_pred CCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccc--cchhhhcCCCCCCeeeC
Q 037969 235 LGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKF--IVPNVLSSFTRLEELYM 300 (300)
Q Consensus 235 l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~--lp~~~l~~L~~L~~L~l 300 (300)
++. | ..+..+++|++|++++|+++.+|.. ++++++|++|++++|. +.. +|.. ++.+++|++|++
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~-~~~l~~L~~L~L 180 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEY-FSNLTNLEHLDL 180 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGG-GGGCTTCCEEEC
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchh-hccchhhhhhcc
Confidence 988 4 5689999999999999999998864 8999999999999998 544 4554 889999999975
No 84
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=1.6e-15 Score=118.86 Aligned_cols=129 Identities=17% Similarity=0.179 Sum_probs=110.4
Q ss_pred cCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC-cccc-cCC
Q 037969 167 VSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD-IAII-GKL 244 (300)
Q Consensus 167 ~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-p~~~-~~l 244 (300)
.+...++++|+.|++.+|.+ ..+|. +....++|++|++++|.++.+ +.++.+++|++|++++|.+.. |+.+ +.+
T Consensus 12 ~~~~~~~~~L~~L~l~~n~l--~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 12 AAQYTNAVRDRELDLRGYKI--PVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp SCEEECTTSCEEEECTTSCC--CSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred HHhcCCcCCceEEEeeCCCC--chhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 34455788999999999999 77765 423344999999999999988 678999999999999999988 6554 899
Q ss_pred CCcCEEEccCCCCCCCch--hhcCCCCCCEEeccCCCCccccchh---hhcCCCCCCeeeC
Q 037969 245 KNLEILSFLNSDIVRLPG--ELGQLTKLRLLDLTDCLQLKFIVPN---VLSSFTRLEELYM 300 (300)
Q Consensus 245 ~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp~~---~l~~L~~L~~L~l 300 (300)
++|++|++++|.++.+|. .++.+++|++|++++|. +..+|.. .++.+++|+.|++
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETT
T ss_pred CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCC
Confidence 999999999999999987 79999999999999999 7777763 4889999999874
No 85
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.60 E-value=1.9e-15 Score=135.93 Aligned_cols=124 Identities=20% Similarity=0.329 Sum_probs=105.1
Q ss_pred CCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEEccCCCCCC--cccccCCCCcCEE
Q 037969 174 LQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEIL 250 (300)
Q Consensus 174 ~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L 250 (300)
++|+.|++.+|.+ ..+++..++.+++|++|++++|.++.+ |..++.+++|++|++++|.+.. |..++.+++|++|
T Consensus 275 ~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 275 SGVKTCDLSKSKI--FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp SCCCEEECCSSCC--CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEE
T ss_pred cCceEEEecCccc--cccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEE
Confidence 5788888888888 555555558899999999999999885 6678899999999999999876 5778899999999
Q ss_pred EccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 251 SFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 251 ~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
++++|.++.+ |..++.+++|++|++++|. ++.+|...+..+++|++|++
T Consensus 353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l 402 (455)
T 3v47_A 353 DLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWL 402 (455)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred ECCCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEc
Confidence 9999998866 6678999999999999998 77888776788999998875
No 86
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.60 E-value=2.8e-14 Score=128.82 Aligned_cols=157 Identities=21% Similarity=0.304 Sum_probs=132.1
Q ss_pred EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969 135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 214 (300)
..+.+..+...+....+++++.|++++|.+..++....+++|+.|++.+|.+ ..++. +..+++|++|++++|.++.
T Consensus 204 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l--~~~~~--~~~l~~L~~L~l~~n~l~~ 279 (466)
T 1o6v_A 204 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQI--SNLAP--LSGLTKLTELKLGANQISN 279 (466)
T ss_dssp EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCC--CCCGG--GTTCTTCSEEECCSSCCCC
T ss_pred EEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCcc--ccchh--hhcCCCCCEEECCCCccCc
Confidence 3444555555555567889999999999998887766899999999999998 66665 5889999999999999998
Q ss_pred CCcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCC
Q 037969 215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR 294 (300)
Q Consensus 215 lp~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~ 294 (300)
+|. +..+++|++|++++|.+.....++.+++|+.|++++|.++.++. ++.+++|+.|++++|. +..++. +..+++
T Consensus 280 ~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--l~~l~~ 354 (466)
T 1o6v_A 280 ISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSDVSS--LANLTN 354 (466)
T ss_dssp CGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCGG--GTTCTT
T ss_pred ccc-ccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc-cCCchh--hccCCC
Confidence 876 88899999999999999884448899999999999999998765 7899999999999998 677754 889999
Q ss_pred CCeeeC
Q 037969 295 LEELYM 300 (300)
Q Consensus 295 L~~L~l 300 (300)
|+.|++
T Consensus 355 L~~L~l 360 (466)
T 1o6v_A 355 INWLSA 360 (466)
T ss_dssp CCEEEC
T ss_pred CCEEeC
Confidence 999875
No 87
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.60 E-value=8.2e-16 Score=131.89 Aligned_cols=146 Identities=16% Similarity=0.138 Sum_probs=123.1
Q ss_pred ccCCccEEEeecCCCcccCcc-c-cCCCccEEecccCccccccCc-hhHHhcCCcccEEEeeCCcCCcCCcccccCCCCc
Q 037969 150 ALKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFVEVNIP-DNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQ 226 (300)
Q Consensus 150 ~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~l~-~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 226 (300)
.+++++.|++++|.+..++.. + .+++|+.|++++|.+ ..++ ..++..+++|++|++++|.++.+|.. ..+++|+
T Consensus 118 ~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~ 194 (317)
T 3o53_A 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEI--DTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLK 194 (317)
T ss_dssp CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCC--CEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCC
T ss_pred ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCC--CcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCC
Confidence 467899999999999776543 3 789999999999998 5544 44445789999999999999988654 4589999
Q ss_pred EEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCc-cccchhhhcCCCCCCeee
Q 037969 227 TLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQL-KFIVPNVLSSFTRLEELY 299 (300)
Q Consensus 227 ~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l-~~lp~~~l~~L~~L~~L~ 299 (300)
+|++++|.+.. |+.+..+++|++|++++|.++.+|..+..+++|+.|++++|... ..+|.. ++.+++|+.|+
T Consensus 195 ~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~-~~~~~~L~~l~ 268 (317)
T 3o53_A 195 TLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVA 268 (317)
T ss_dssp EEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHH-HHTCHHHHHHH
T ss_pred EEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHH-HhccccceEEE
Confidence 99999999998 77899999999999999999999999999999999999999954 355544 77887776654
No 88
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.60 E-value=5.7e-15 Score=142.67 Aligned_cols=161 Identities=22% Similarity=0.284 Sum_probs=128.5
Q ss_pred EEEeccccccCCCccccCCccEEEeecCCCccc-Cccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcC
Q 037969 135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEV-SEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRL 212 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~ 212 (300)
.......+..+|. .+++++.|++++|.+..+ +..+ .+++|++|++++|... ..+++..|.++++|++|+|++|.+
T Consensus 9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~-~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP-LTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp EEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC-CEECTTTTSSCTTCCEEECTTCCC
T ss_pred EEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc-cccCHHHhcCCCCCCEEECCCCcC
Confidence 4445566777886 678999999999999665 3444 9999999999998552 667555569999999999999999
Q ss_pred CcC-CcccccCCCCcEEEccCCCCCC--ccc--ccCCCCcCEEEccCCCCCCCc--hhhcCCCCCCEEeccCCCCccccc
Q 037969 213 FSL-PSSIGLLANLQTLCLDQSMLGD--IAI--IGKLKNLEILSFLNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFIV 285 (300)
Q Consensus 213 ~~l-p~~i~~l~~L~~L~l~~~~l~~--p~~--~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp 285 (300)
+.+ |..++++++|++|++++|.+.. |.. ++.+++|++|++++|.++.++ ..++++++|++|++++|......|
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 985 8889999999999999999886 544 899999999999999988653 569999999999999998444444
Q ss_pred hhhhcCC--CCCCeee
Q 037969 286 PNVLSSF--TRLEELY 299 (300)
Q Consensus 286 ~~~l~~L--~~L~~L~ 299 (300)
.. ++.+ ++|+.|+
T Consensus 166 ~~-l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 166 HE-LEPLQGKTLSFFS 180 (844)
T ss_dssp GG-GHHHHHCSSCCCE
T ss_pred HH-cccccCCccceEE
Confidence 43 5554 5555543
No 89
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=9.8e-15 Score=116.07 Aligned_cols=121 Identities=24% Similarity=0.331 Sum_probs=107.6
Q ss_pred cEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC-cccccCCCCcEEEccCC
Q 037969 155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQTLCLDQS 233 (300)
Q Consensus 155 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~ 233 (300)
+.++++++.+..+|..+ .++++.|++.+|.+ ..+|.. |..+++|++|++++|.++.++ ..+..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i--~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQF--TLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSCC--CSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcC--chhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 57888899998888754 36899999999999 889865 489999999999999999975 56899999999999999
Q ss_pred CCCC--cccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCC
Q 037969 234 MLGD--IAIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCL 279 (300)
Q Consensus 234 ~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~ 279 (300)
.+.. +..+..+++|++|++++|.++.+|.. +..+++|++|++++|+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 9988 46799999999999999999998875 7889999999999987
No 90
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.60 E-value=1.5e-14 Score=124.79 Aligned_cols=146 Identities=25% Similarity=0.340 Sum_probs=74.6
Q ss_pred cccCCccEEEeecCCCccc-Cccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc-ccccCCCC
Q 037969 149 DALKKCSAISLLNSSIHEV-SEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANL 225 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~~-~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L 225 (300)
..+++++.|++++|.+..+ |..+ .+++|+.|++++|.+ ..+|..++ ++|++|++++|.++.+|. .++.+++|
T Consensus 75 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L 149 (332)
T 2ft3_A 75 KGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL--VEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNM 149 (332)
T ss_dssp TTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC--CSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSC
T ss_pred hCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC--CccCcccc---ccCCEEECCCCccCccCHhHhCCCccC
Confidence 3444555555555555433 2222 455555555555555 45554331 455555555555555433 35556666
Q ss_pred cEEEccCCCCCC----cccccCC--------------------CCcCEEEccCCCCCCCc-hhhcCCCCCCEEeccCCCC
Q 037969 226 QTLCLDQSMLGD----IAIIGKL--------------------KNLEILSFLNSDIVRLP-GELGQLTKLRLLDLTDCLQ 280 (300)
Q Consensus 226 ~~L~l~~~~l~~----p~~~~~l--------------------~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~ 280 (300)
++|++++|.+.. +..+..+ ++|++|++++|.++.++ ..+.++++|++|++++|.
T Consensus 150 ~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~- 228 (332)
T 2ft3_A 150 NCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ- 228 (332)
T ss_dssp CEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-
T ss_pred CEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-
Confidence 666666665531 2333322 23344444444444333 345566666666666666
Q ss_pred ccccchhhhcCCCCCCeeeC
Q 037969 281 LKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 281 l~~lp~~~l~~L~~L~~L~l 300 (300)
+..++...++.+++|++|++
T Consensus 229 l~~~~~~~~~~l~~L~~L~L 248 (332)
T 2ft3_A 229 IRMIENGSLSFLPTLRELHL 248 (332)
T ss_dssp CCCCCTTGGGGCTTCCEEEC
T ss_pred CCcCChhHhhCCCCCCEEEC
Confidence 45555433666666666654
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.59 E-value=1.9e-15 Score=129.18 Aligned_cols=144 Identities=15% Similarity=0.134 Sum_probs=94.0
Q ss_pred cCCccEEEeecCCCcccCc-cc-cCCCccEEecccCcccccc--Cch-hHHhcCCcccEEEeeCCcCCcCCcc----ccc
Q 037969 151 LKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVN--IPD-NIFKGMKTLRVIDLTRMRLFSLPSS----IGL 221 (300)
Q Consensus 151 ~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~--l~~-~~~~~l~~L~~L~l~~~~~~~lp~~----i~~ 221 (300)
+++++.|++++|.+..++. .+ .+++|++|++++|.+. +. ++. ..+..+++|++|++++|.++.+|.. ++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGL-GERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTC-HHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCc-cchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 5567777777777754443 23 6777777777777641 11 111 1124566777777777777655442 456
Q ss_pred CCCCcEEEccCCCCCC--cccccCC---CCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCC
Q 037969 222 LANLQTLCLDQSMLGD--IAIIGKL---KNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLE 296 (300)
Q Consensus 222 l~~L~~L~l~~~~l~~--p~~~~~l---~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~ 296 (300)
+++|++|++++|.+.. |+.++.+ ++|++|++++|.++.+|..+. ++|++|++++|. +..+|. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~-l~~~~~--~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNR-LNRAPQ--PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCC-CCSCCC--TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCc-CCCCch--hhhCCCcc
Confidence 6777777887777765 5556665 578888888777777777664 678888888777 666654 56777777
Q ss_pred eeeC
Q 037969 297 ELYM 300 (300)
Q Consensus 297 ~L~l 300 (300)
+|++
T Consensus 298 ~L~L 301 (310)
T 4glp_A 298 NLTL 301 (310)
T ss_dssp CEEC
T ss_pred EEEC
Confidence 7764
No 92
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=3.3e-15 Score=141.65 Aligned_cols=112 Identities=28% Similarity=0.342 Sum_probs=86.1
Q ss_pred cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC-cccccCCCCcCEE
Q 037969 172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD-IAIIGKLKNLEIL 250 (300)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L 250 (300)
.+++|+.|++++|.+ ..+|..++ .+++|++|+|++|.++.+|..++.+++|++|+|++|.+.. |..++.+++|++|
T Consensus 222 ~l~~L~~L~Ls~n~l--~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQI--FNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCC--SCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCC--CCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 677788888888877 67777764 6788888888888888778778888888888888888777 7777888888888
Q ss_pred EccCCCCCCCchhhcCCCCCCEEeccCCCCccccch
Q 037969 251 SFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVP 286 (300)
Q Consensus 251 ~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 286 (300)
+|++|.++.+|..++++++|++|+|++|...+.+|.
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHH
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCCccCCCChH
Confidence 888887778887788888888888888873334443
No 93
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.59 E-value=1.9e-14 Score=114.43 Aligned_cols=121 Identities=18% Similarity=0.247 Sum_probs=96.7
Q ss_pred EEEeccccccCCCccccCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC
Q 037969 135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF 213 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 213 (300)
....+..+..+|. ...++++.|++++|.+..+|..+ .+++|+.|++++|.+ ..++...|.++++|++|++++|.++
T Consensus 15 l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i--~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 15 VRCSNKGLKVLPK-GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRI--STLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp EECTTSCCSSCCS-CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEcCCCCCCcCCC-CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcC--CEeCHhHccCCCCCCEEECCCCccC
Confidence 3445555666665 34567889999999888887655 888999999999988 7777766788899999999999998
Q ss_pred cCC-cccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCC
Q 037969 214 SLP-SSIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIV 258 (300)
Q Consensus 214 ~lp-~~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~ 258 (300)
.+| ..++.+++|++|++++|.+.. | ..+..+++|+.|++++|.+.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 875 468888999999999998887 4 45788889999999888764
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=1.9e-14 Score=132.19 Aligned_cols=146 Identities=16% Similarity=0.247 Sum_probs=107.6
Q ss_pred EEEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC
Q 037969 134 VFLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF 213 (300)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 213 (300)
...+.++.+..+| ..+++++.|++++|.+..+|. +. .+|+.|++++|.+ ..+|. .+++|++|++++|.++
T Consensus 84 ~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~-~~L~~L~Ls~N~l--~~lp~----~l~~L~~L~Ls~N~l~ 153 (571)
T 3cvr_A 84 VLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LP-ASLKHLDVDNNQL--TMLPE----LPALLEYINADNNQLT 153 (571)
T ss_dssp EEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CC-TTCCEEECCSSCC--SCCCC----CCTTCCEEECCSSCCS
T ss_pred EEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hh-cCCCEEECCCCcC--CCCCC----cCccccEEeCCCCccC
Confidence 3455566666666 557788888888888877777 31 2788888888887 66776 4678888888888888
Q ss_pred cCCcccccCCCCcEEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCC-------CEEeccCCCCccccc
Q 037969 214 SLPSSIGLLANLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKL-------RLLDLTDCLQLKFIV 285 (300)
Q Consensus 214 ~lp~~i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L-------~~L~l~~~~~l~~lp 285 (300)
.+|. .+++|++|++++|.+.. |. ++ ++|++|++++|.++.+|. +.. +| +.|++++|. +..+|
T Consensus 154 ~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~-l~~lp 223 (571)
T 3cvr_A 154 MLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENR-ITHIP 223 (571)
T ss_dssp CCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSC-CCCCC
T ss_pred cCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCc-ceecC
Confidence 8776 46778888888888777 55 54 788888888888888877 554 66 888888887 77788
Q ss_pred hhhhcCCCCCCeeeC
Q 037969 286 PNVLSSFTRLEELYM 300 (300)
Q Consensus 286 ~~~l~~L~~L~~L~l 300 (300)
.. +..+++|+.|+|
T Consensus 224 ~~-l~~l~~L~~L~L 237 (571)
T 3cvr_A 224 EN-ILSLDPTCTIIL 237 (571)
T ss_dssp GG-GGGSCTTEEEEC
T ss_pred HH-HhcCCCCCEEEe
Confidence 76 666888888765
No 95
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.58 E-value=1.8e-14 Score=129.64 Aligned_cols=151 Identities=17% Similarity=0.170 Sum_probs=108.6
Q ss_pred EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969 135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 214 (300)
....+..+..+|....+++++.|++++|.+..+| ...+++|++|++++|.+ ..++ ++.+++|++|++++|.++.
T Consensus 47 L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l--~~~~---~~~l~~L~~L~L~~N~l~~ 120 (457)
T 3bz5_A 47 LDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKL--TNLD---VTPLTKLTYLNCDTNKLTK 120 (457)
T ss_dssp EECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCC--SCCC---CTTCTTCCEEECCSSCCSC
T ss_pred EEccCCCcccChhhcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCC--ceee---cCCCCcCCEEECCCCcCCe
Confidence 3444555555665566777888888888776665 44777888888888777 5554 3677788888888887777
Q ss_pred CCcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCC-CCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCC
Q 037969 215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNS-DIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFT 293 (300)
Q Consensus 215 lp~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~ 293 (300)
+| ++.+++|++|++++|.+... .++.+++|++|++++| .+..+ .++.+++|++|++++|. ++.+| ++.++
T Consensus 121 l~--~~~l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~-l~~l~---l~~l~ 191 (457)
T 3bz5_A 121 LD--VSQNPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK-ITELD---VSQNK 191 (457)
T ss_dssp CC--CTTCTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-CCCCC---CTTCT
T ss_pred ec--CCCCCcCCEEECCCCcccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-cceec---cccCC
Confidence 75 67778888888888877763 2677778888888887 45555 36778888888888887 66666 56778
Q ss_pred CCCeeeC
Q 037969 294 RLEELYM 300 (300)
Q Consensus 294 ~L~~L~l 300 (300)
+|+.|++
T Consensus 192 ~L~~L~l 198 (457)
T 3bz5_A 192 LLNRLNC 198 (457)
T ss_dssp TCCEEEC
T ss_pred CCCEEEC
Confidence 8887764
No 96
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.58 E-value=1.1e-14 Score=124.56 Aligned_cols=146 Identities=20% Similarity=0.169 Sum_probs=92.0
Q ss_pred cccCCccEEEeecCCCcccCccc-cC-----CCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc---CCccc
Q 037969 149 DALKKCSAISLLNSSIHEVSEEF-EC-----LQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS---LPSSI 219 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~~~~~~-~~-----~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~---lp~~i 219 (300)
..+++++.|++++|.+..+|..+ .+ ++|++|++++|.+ ..++...+..+++|++|++++|.+.. +|..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS--LNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSC--CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCC--ccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 45666777777777775555443 33 6777777777777 55554444667777777777776543 24444
Q ss_pred --ccCCCCcEEEccCCCCCC-c----ccccCCCCcCEEEccCCCCCCCc--hhhcCCCCCCEEeccCCCCccccchhhhc
Q 037969 220 --GLLANLQTLCLDQSMLGD-I----AIIGKLKNLEILSFLNSDIVRLP--GELGQLTKLRLLDLTDCLQLKFIVPNVLS 290 (300)
Q Consensus 220 --~~l~~L~~L~l~~~~l~~-p----~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~l~~lp~~~l~ 290 (300)
+.+++|++|++++|.+.. + ..+..+++|++|++++|.++..+ ..+..+++|++|++++|. ++.+|.. +.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~-~~ 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKG-LP 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSS-CC
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhh-cc
Confidence 667777777777777664 2 22345677777777777776543 234556777777777777 5567665 33
Q ss_pred CCCCCCeeeC
Q 037969 291 SFTRLEELYM 300 (300)
Q Consensus 291 ~L~~L~~L~l 300 (300)
++|++|++
T Consensus 274 --~~L~~L~L 281 (312)
T 1wwl_A 274 --AKLSVLDL 281 (312)
T ss_dssp --SEEEEEEC
T ss_pred --CCceEEEC
Confidence 56666654
No 97
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.58 E-value=5.6e-15 Score=126.42 Aligned_cols=143 Identities=20% Similarity=0.185 Sum_probs=101.2
Q ss_pred CCccEEEeecCCCcccC-ccc-cCCCccEEecccCcccccc--CchhH-HhcCCcccEEEeeCCcCCcCC---c-ccccC
Q 037969 152 KKCSAISLLNSSIHEVS-EEF-ECLQLEFLHISQNTFVEVN--IPDNI-FKGMKTLRVIDLTRMRLFSLP---S-SIGLL 222 (300)
Q Consensus 152 ~~l~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~--l~~~~-~~~l~~L~~L~l~~~~~~~lp---~-~i~~l 222 (300)
++++.|++++|.+..++ ..+ .+++|+.|++++|.+. +. ++..+ +..+++|++|++++|.++.+| . .+..+
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l 227 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL-GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC-HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC-cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC
Confidence 67888888888886655 333 7888888888888751 22 12221 256788888888888887433 2 23466
Q ss_pred CCCcEEEccCCCCCC-c--ccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969 223 ANLQTLCLDQSMLGD-I--AIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299 (300)
Q Consensus 223 ~~L~~L~l~~~~l~~-p--~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 299 (300)
++|++|++++|.+.. + +.+..+++|++|++++|.++.+|..+. ++|++|++++|+ +..+|. +..+++|++|+
T Consensus 228 ~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~--~~~l~~L~~L~ 302 (312)
T 1wwl_A 228 VQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNR-LDRNPS--PDELPQVGNLS 302 (312)
T ss_dssp CCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSC-CCSCCC--TTTSCEEEEEE
T ss_pred CCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCC-CCCChh--HhhCCCCCEEe
Confidence 788888888888776 3 455667888888888888888887766 788888888887 666665 67788887776
Q ss_pred C
Q 037969 300 M 300 (300)
Q Consensus 300 l 300 (300)
+
T Consensus 303 L 303 (312)
T 1wwl_A 303 L 303 (312)
T ss_dssp C
T ss_pred c
Confidence 4
No 98
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=1e-14 Score=134.36 Aligned_cols=121 Identities=18% Similarity=0.252 Sum_probs=108.4
Q ss_pred CccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccC
Q 037969 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLN 254 (300)
Q Consensus 175 ~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~ 254 (300)
.|+.|++++|.+ ..+|. ++.+++|++|++++|.++.+|..++.+++|++|++++|.++.++.++.+++|++|++++
T Consensus 442 ~L~~L~Ls~n~l--~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDL--TVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCC--SSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred CceEEEecCCCC--CCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCC
Confidence 688999999999 78887 58999999999999999999999999999999999999999844899999999999999
Q ss_pred CCCCCC--chhhcCCCCCCEEeccCCCCccccchh---hhcCCCCCCeeeC
Q 037969 255 SDIVRL--PGELGQLTKLRLLDLTDCLQLKFIVPN---VLSSFTRLEELYM 300 (300)
Q Consensus 255 ~~l~~l--p~~~~~l~~L~~L~l~~~~~l~~lp~~---~l~~L~~L~~L~l 300 (300)
|.++.+ |..++.+++|+.|++++|. +..+|+. .+..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 999988 8999999999999999999 6666642 2455899999875
No 99
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.58 E-value=2e-14 Score=135.72 Aligned_cols=162 Identities=20% Similarity=0.257 Sum_probs=131.8
Q ss_pred EEEeccccccCCC--ccccCCccEEEeecCCCcccC-ccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC
Q 037969 135 FLVRNEVVWEWPD--EDALKKCSAISLLNSSIHEVS-EEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM 210 (300)
Q Consensus 135 ~~~~~~~~~~~~~--~~~~~~l~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~ 210 (300)
..+.++.+..++. ...+++++.|++++|.+..++ ..+ ++++|++|++++|.+ ..+|+..|.++++|++|++++|
T Consensus 30 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~l~~~~~~~l~~L~~L~L~~n 107 (680)
T 1ziw_A 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL--SQLSDKTFAFCTNLTELHLMSN 107 (680)
T ss_dssp EECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC--CCCCTTTTTTCTTCSEEECCSS
T ss_pred EECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc--CccChhhhccCCCCCEEECCCC
Confidence 3445555555554 366889999999999996654 444 899999999999999 8888876689999999999999
Q ss_pred cCCcCC-cccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCchh-h--cCCCCCCEEeccCCCCcccc
Q 037969 211 RLFSLP-SSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPGE-L--GQLTKLRLLDLTDCLQLKFI 284 (300)
Q Consensus 211 ~~~~lp-~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~~-~--~~l~~L~~L~l~~~~~l~~l 284 (300)
.++.+| ..++.+++|++|++++|.+.. |..++.+++|++|++++|.++.++.. + ..+++|++|++++|. +..+
T Consensus 108 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~ 186 (680)
T 1ziw_A 108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEF 186 (680)
T ss_dssp CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC-CCCB
T ss_pred ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc-cccc
Confidence 999875 679999999999999999887 57789999999999999999977664 3 356899999999998 6666
Q ss_pred chhhhcCCCCCCeee
Q 037969 285 VPNVLSSFTRLEELY 299 (300)
Q Consensus 285 p~~~l~~L~~L~~L~ 299 (300)
++..++.+++|+.|+
T Consensus 187 ~~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 187 SPGCFHAIGRLFGLF 201 (680)
T ss_dssp CTTGGGGSSEECEEE
T ss_pred Chhhhhhhhhhhhhh
Confidence 554477776665553
No 100
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=1.5e-14 Score=114.94 Aligned_cols=123 Identities=20% Similarity=0.358 Sum_probs=99.3
Q ss_pred cEEEeecCCCcccCccccCCCccEEecccCccccccCchh-HHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEEccC
Q 037969 155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDN-IFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQ 232 (300)
Q Consensus 155 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~-~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 232 (300)
+.++++++.++.+|..+. ++++.|++.+|.+ ..++.. .+..+++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i--~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNEL--GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSCCC--CSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEECCCCcC--CccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 577888888888887542 3888899998888 666653 457888999999999988886 67788889999999999
Q ss_pred CCCCC--cccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCC
Q 037969 233 SMLGD--IAIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQ 280 (300)
Q Consensus 233 ~~l~~--p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~ 280 (300)
|.+.. +..+..+++|++|++++|.++.+ |..+..+++|++|++++|..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 98887 35588888999999999988855 66788888999999988874
No 101
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=133.17 Aligned_cols=148 Identities=18% Similarity=0.225 Sum_probs=90.4
Q ss_pred EeccccccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969 137 VRNEVVWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 214 (300)
..+..+..+|.. ..++++.|++++|.+..++. .+ .+++|++|++++|.+ ..+++..|.++++|++|++++|.++.
T Consensus 7 ls~n~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~ 83 (520)
T 2z7x_B 7 RSKNGLIHVPKD-LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI--QYLDISVFKFNQELEYLDLSHNKLVK 83 (520)
T ss_dssp CTTSCCSSCCCS-CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCC--CEEEGGGGTTCTTCCEEECCSSCCCE
T ss_pred cCCCCccccccc-ccccccEEECCCCcccccChhhccccccccEEecCCCcc--CCcChHHhhcccCCCEEecCCCceee
Confidence 334445555542 22667777777777655542 22 667777777777766 55544344667777777777777776
Q ss_pred CCcccccCCCCcEEEccCCCCCC---cccccCCCCcCEEEccCCCCCCCchhhcCCCCC--CEEeccCCCC--ccccchh
Q 037969 215 LPSSIGLLANLQTLCLDQSMLGD---IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKL--RLLDLTDCLQ--LKFIVPN 287 (300)
Q Consensus 215 lp~~i~~l~~L~~L~l~~~~l~~---p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L--~~L~l~~~~~--l~~lp~~ 287 (300)
+|.. .+++|++|++++|.+.. |..++.+++|++|++++|.++. ..++.+++| ++|++++|.. .+..|..
T Consensus 84 lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~ 159 (520)
T 2z7x_B 84 ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEG 159 (520)
T ss_dssp EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTT
T ss_pred cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccccccc
Confidence 6655 66777777777776654 4567777777777777776654 245556666 7777777664 3444443
Q ss_pred hhcCC
Q 037969 288 VLSSF 292 (300)
Q Consensus 288 ~l~~L 292 (300)
++.+
T Consensus 160 -l~~l 163 (520)
T 2z7x_B 160 -LQDF 163 (520)
T ss_dssp -TTTC
T ss_pred -cccc
Confidence 4443
No 102
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=1e-14 Score=115.91 Aligned_cols=118 Identities=19% Similarity=0.256 Sum_probs=103.8
Q ss_pred cEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcc--cccCCCCcEEEccCCCCCC--cccccCCCCcCEEEc
Q 037969 177 EFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS--IGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSF 252 (300)
Q Consensus 177 ~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~--i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l 252 (300)
++++++++.+ ..+|..++ ..+++|++++|.++.+|.. ++.+++|++|++++|.+.. |..++.+++|++|++
T Consensus 11 ~~l~~s~~~l--~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGL--KEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCC--SSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCc--CcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 7899999999 89998663 4899999999999998753 8999999999999999988 678999999999999
Q ss_pred cCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 253 LNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 253 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
++|.++.+|.. +..+++|++|++++|. +..+++..++.+++|++|++
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEEC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCc-CCeeCHHHhhcCCCCCEEEe
Confidence 99999977665 8899999999999999 66564445999999999975
No 103
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.57 E-value=6e-15 Score=136.27 Aligned_cols=146 Identities=18% Similarity=0.332 Sum_probs=101.1
Q ss_pred CCccEEEeecCCCcccCccc-cCCCccEEecccCccccccC-chhHHhcCCcccEEEeeCCcCCc-CCcccccCCCCcEE
Q 037969 152 KKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNI-PDNIFKGMKTLRVIDLTRMRLFS-LPSSIGLLANLQTL 228 (300)
Q Consensus 152 ~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l-~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L 228 (300)
++++.|++++|.+..++..+ .+++|+.|++.+|.+ ... |...+..+++|++|++++|.+.. .|..++.+++|++|
T Consensus 373 ~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l--~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 450 (570)
T 2z63_A 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL--KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450 (570)
T ss_dssp SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEE--ESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred CccCEEECCCCccccccccccccCCCCEEEccCCcc--ccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEE
Confidence 33444444444443333223 566666666666665 333 22334677778888888877776 46667778888888
Q ss_pred EccCCCCC--C-cccccCCCCcCEEEccCCCCCCC-chhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 229 CLDQSMLG--D-IAIIGKLKNLEILSFLNSDIVRL-PGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 229 ~l~~~~l~--~-p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
++++|.+. . |..++.+++|++|++++|.++.+ |..++++++|++|++++|. +..+|+..+..+++|++|++
T Consensus 451 ~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 525 (570)
T 2z63_A 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWL 525 (570)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred ECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEe
Confidence 88888875 2 67788888888888888888865 6678888888888888887 66666655788888888865
No 104
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=4.1e-14 Score=110.78 Aligned_cols=127 Identities=20% Similarity=0.282 Sum_probs=104.6
Q ss_pred ccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcc-cccCCCCcEEEccC
Q 037969 154 CSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS-IGLLANLQTLCLDQ 232 (300)
Q Consensus 154 l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~ 232 (300)
.+.+++.++.+..+|... .++|+.|++.+|.+ ..++...+..+++|++|++++|.++.+|.. ++.+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI-PSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC-CCCCcEEEeCCCcc--cEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 356778888887777543 47899999999998 778877778899999999999999987654 68899999999999
Q ss_pred CCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCCEEeccCCCCccc
Q 037969 233 SMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKF 283 (300)
Q Consensus 233 ~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~ 283 (300)
|.+.. | ..+..+++|++|++++|.++.+|.. +..+++|++|++++|+....
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 99888 4 4468899999999999999988876 47799999999999984433
No 105
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=7.3e-15 Score=133.28 Aligned_cols=139 Identities=22% Similarity=0.240 Sum_probs=102.6
Q ss_pred cCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEE
Q 037969 151 LKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLC 229 (300)
Q Consensus 151 ~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~ 229 (300)
+++++.|++++|.+..++. .++|+.|++++|.+ ..++. ..+++|++|++++|.++.+ |..++.+++|++|+
T Consensus 79 l~~L~~L~Ls~N~l~~l~~---~~~L~~L~L~~N~l--~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 150 (487)
T 3oja_A 79 LSTLRTLDLNNNYVQELLV---GPSIETLHAANNNI--SRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150 (487)
T ss_dssp CTTCCEEECCSSEEEEEEE---CTTCCEEECCSSCC--CCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE
T ss_pred CCCCCEEEecCCcCCCCCC---CCCcCEEECcCCcC--CCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE
Confidence 3444444444444433322 24455555555555 34433 3467889999999999886 66788999999999
Q ss_pred ccCCCCCC--ccccc-CCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 230 LDQSMLGD--IAIIG-KLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 230 l~~~~l~~--p~~~~-~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
+++|.+.. |..+. .+++|++|++++|.++.+|. ...+++|++|++++|. +..+|+. ++.+++|+.|++
T Consensus 151 Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~-~~~l~~L~~L~L 221 (487)
T 3oja_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNK-LAFMGPE-FQSAAGVTWISL 221 (487)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSC-CCEECGG-GGGGTTCSEEEC
T ss_pred CCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCC-CCCCCHh-HcCCCCccEEEe
Confidence 99999887 56665 78999999999999998865 4569999999999998 7888887 889999999875
No 106
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=5.2e-15 Score=140.31 Aligned_cols=106 Identities=27% Similarity=0.372 Sum_probs=62.0
Q ss_pred ccCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEE
Q 037969 150 ALKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTL 228 (300)
Q Consensus 150 ~~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 228 (300)
.+..++.|++++|.+..+|... .+++|++|++++|.+ ..+|..+ +.+++|++|+|++|.++.+|..++.+.+|++|
T Consensus 222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l--~~lp~~~-~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSL--TELPAEI-KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCC--SCCCGGG-GGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcC--cccChhh-hCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 3445556666666655555433 556666666666655 4555544 55666666666666666556556666666666
Q ss_pred EccCCCCCC-cccccCCCCcCEEEccCCCCC
Q 037969 229 CLDQSMLGD-IAIIGKLKNLEILSFLNSDIV 258 (300)
Q Consensus 229 ~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~ 258 (300)
+|++|.+.. |..++.+++|++|+|++|.++
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence 666665555 555666666666666666555
No 107
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=123.83 Aligned_cols=146 Identities=16% Similarity=0.109 Sum_probs=118.0
Q ss_pred cccCCccEEEeecCCCcc-cCc-----cccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc---CC--c
Q 037969 149 DALKKCSAISLLNSSIHE-VSE-----EFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS---LP--S 217 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~-~~~-----~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~---lp--~ 217 (300)
..+++++.|++++|.+.. .+. ...+++|++|++++|.+ ..++...+..+++|++|++++|++.. ++ .
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 191 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHS--PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL 191 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSS--CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCc--chhhHHHhccCCCCCEEECCCCCCccchhhhHHH
Confidence 457889999999999854 221 12689999999999999 77776666899999999999998764 32 3
Q ss_pred ccccCCCCcEEEccCCCCCC-cc----cccCCCCcCEEEccCCCCCCC-chhhcCC---CCCCEEeccCCCCccccchhh
Q 037969 218 SIGLLANLQTLCLDQSMLGD-IA----IIGKLKNLEILSFLNSDIVRL-PGELGQL---TKLRLLDLTDCLQLKFIVPNV 288 (300)
Q Consensus 218 ~i~~l~~L~~L~l~~~~l~~-p~----~~~~l~~L~~L~l~~~~l~~l-p~~~~~l---~~L~~L~l~~~~~l~~lp~~~ 288 (300)
.++.+++|++|++++|.++. +. .++.+++|++|++++|.++.+ |..++.+ ++|++|++++|. ++.+|..
T Consensus 192 ~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~- 269 (310)
T 4glp_A 192 CPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPKG- 269 (310)
T ss_dssp CTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCSC-
T ss_pred hhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC-CCchhhh-
Confidence 34789999999999999987 33 257889999999999999876 8777777 699999999999 7789886
Q ss_pred hcCCCCCCeeeC
Q 037969 289 LSSFTRLEELYM 300 (300)
Q Consensus 289 l~~L~~L~~L~l 300 (300)
+. ++|++|++
T Consensus 270 ~~--~~L~~L~L 279 (310)
T 4glp_A 270 LP--AKLRVLDL 279 (310)
T ss_dssp CC--SCCSCEEC
T ss_pred hc--CCCCEEEC
Confidence 43 78888875
No 108
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.55 E-value=3.7e-14 Score=131.99 Aligned_cols=102 Identities=20% Similarity=0.274 Sum_probs=42.9
Q ss_pred hcCCcccEEEeeCCcCCcC---CcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCC-ch-hhcCCCC
Q 037969 197 KGMKTLRVIDLTRMRLFSL---PSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRL-PG-ELGQLTK 269 (300)
Q Consensus 197 ~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~l-p~-~~~~l~~ 269 (300)
..+++|++|++++|.++.. |..++.+++|++|++++|.+.. |..++.+++|++|++++|.++.. |. .+.++++
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 426 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCccc
Confidence 4444444444444444432 3334444444444444444433 23344444444444444443322 11 1444444
Q ss_pred CCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969 270 LRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299 (300)
Q Consensus 270 L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 299 (300)
|++|++++|. +...++..++.+++|++|+
T Consensus 427 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 427 LKVLNLSHSL-LDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp CCEEECTTCC-CBTTCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCc-cCCcCHHHHhCCCCCCEEE
Confidence 4444444444 2222222244444444443
No 109
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.55 E-value=1.1e-13 Score=124.44 Aligned_cols=151 Identities=12% Similarity=0.069 Sum_probs=119.9
Q ss_pred EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969 135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 214 (300)
..+..+.+..++ ...+++++.|++++|.+..++ ...+++|++|++++|.+ ..+| ++.+++|++|++++|.++.
T Consensus 69 L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~L~~N~l--~~l~---~~~l~~L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 69 LICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKL--TKLD---VSQNPLLTYLNCARNTLTE 141 (457)
T ss_dssp EECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEECCSSCC--SCCC---CTTCTTCCEEECTTSCCSC
T ss_pred EEccCCcCCeEc-cccCCCCCEEECcCCCCceee-cCCCCcCCEEECCCCcC--Ceec---CCCCCcCCEEECCCCccce
Confidence 445555566554 466788999999999887765 44888999999999988 6665 4788999999999999888
Q ss_pred CCcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCC
Q 037969 215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR 294 (300)
Q Consensus 215 lp~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~ 294 (300)
+| ++.+++|++|++++|.....-.++.+++|++|++++|.++.+| ++.+++|+.|++++|. +..++ ++.+++
T Consensus 142 l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~-l~~~~---l~~l~~ 213 (457)
T 3bz5_A 142 ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN-ITKLD---LNQNIQ 213 (457)
T ss_dssp CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSC-CSCCC---CTTCTT
T ss_pred ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCc-CCeec---cccCCC
Confidence 75 7788899999999886444225778889999999999988887 7888999999999988 66663 678888
Q ss_pred CCeeeC
Q 037969 295 LEELYM 300 (300)
Q Consensus 295 L~~L~l 300 (300)
|++|++
T Consensus 214 L~~L~L 219 (457)
T 3bz5_A 214 LTFLDC 219 (457)
T ss_dssp CSEEEC
T ss_pred CCEEEC
Confidence 888875
No 110
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.54 E-value=5.7e-16 Score=123.74 Aligned_cols=142 Identities=22% Similarity=0.283 Sum_probs=108.5
Q ss_pred ccEEEeecC--CCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEc
Q 037969 154 CSAISLLNS--SIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCL 230 (300)
Q Consensus 154 l~~L~l~~~--~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l 230 (300)
++...+.+. .++.+|..+ .+++|++|++++|.+ ..+| . +..+++|++|++++|.++.+|..++.+++|++|++
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l--~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L 100 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNI--EKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWI 100 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEE--SCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEE
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCC--cccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEEC
Confidence 445555443 345555544 788999999998888 6777 4 47888999999999988888888888888999999
Q ss_pred cCCCCCCcccccCCCCcCEEEccCCCCCCCch--hhcCCCCCCEEeccCCCCccccc---------hhhhcCCCCCCeee
Q 037969 231 DQSMLGDIAIIGKLKNLEILSFLNSDIVRLPG--ELGQLTKLRLLDLTDCLQLKFIV---------PNVLSSFTRLEELY 299 (300)
Q Consensus 231 ~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l~~~~~l~~lp---------~~~l~~L~~L~~L~ 299 (300)
++|.+..++.++.+++|++|++++|.++.+|. .+..+++|++|++++|......| ...+..+++|+.|+
T Consensus 101 ~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 101 SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 99988884468888899999999998887765 68888999999999887322222 22367788888775
No 111
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.53 E-value=4.7e-14 Score=130.28 Aligned_cols=136 Identities=21% Similarity=0.255 Sum_probs=71.4
Q ss_pred EeccccccCCCccccCCccEEEeecCCCcccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969 137 VRNEVVWEWPDEDALKKCSAISLLNSSIHEVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214 (300)
Q Consensus 137 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 214 (300)
..+..+..+|.. ..++++.|++++|.+..++. .+ .+++|++|++++|.+ ..+++..|.++++|++|++++|.++.
T Consensus 38 ls~~~L~~ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~ 114 (562)
T 3a79_B 38 YSNRNLTHVPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI--RSLDFHVFLFNQDLEYLDVSHNRLQN 114 (562)
T ss_dssp CTTSCCCSCCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCC--CEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred cCCCCCccCCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCC--CcCCHHHhCCCCCCCEEECCCCcCCc
Confidence 334444444432 23555566666665544442 22 555666666666555 44433334555666666666666555
Q ss_pred CCcccccCCCCcEEEccCCCCCC---cccccCCCCcCEEEccCCCCCCCchhhcCCCCC--CEEeccCCC
Q 037969 215 LPSSIGLLANLQTLCLDQSMLGD---IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKL--RLLDLTDCL 279 (300)
Q Consensus 215 lp~~i~~l~~L~~L~l~~~~l~~---p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L--~~L~l~~~~ 279 (300)
+|.. .+++|++|++++|.+.. |..++.+++|++|++++|.++.. .+..+++| ++|++++|.
T Consensus 115 lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 115 ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESS
T ss_pred cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeeccc
Confidence 5544 55556666666665544 24555566666666666555431 23333444 566665555
No 112
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.53 E-value=1e-15 Score=140.83 Aligned_cols=94 Identities=11% Similarity=0.045 Sum_probs=73.7
Q ss_pred cccccceeeccccCCchhHHHHHH-----------HhhhcCCCCCHHHHHhhhhhc--ccccCch---hHHHHHHHHHHH
Q 037969 32 AETYSSIELSFKYLKGEQLKKIFL-----------LCSLIGNSFWFTDLFKYSMGL--GIFQGVN---RMVDARNKLYAL 95 (300)
Q Consensus 32 ~~i~~~l~lsy~~L~~~~lk~cfl-----------~~a~fp~~~~~~~Li~~w~ae--g~i~~~~---~~e~~~~~~~~~ 95 (300)
..+.+++++||++||.+ +|.||+ |||+||+++.++ +++|+|+ ||+.... ..+++. . +
T Consensus 361 ~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~---~-~ 433 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVA---D-R 433 (549)
T ss_dssp STTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHH---H-H
T ss_pred HHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHH---H-H
Confidence 34999999999999999 999999 999999999999 8899999 9997532 233333 2 6
Q ss_pred HHHHHHhcccccCC--CCCcEEechhHHHHHHHHhhcCC
Q 037969 96 VHELRDSCLLLEGD--SSEQFSMHDVVYDVVVSIACRDQ 132 (300)
Q Consensus 96 ~~~L~~~~~~~~~~--~~~~~~~hdl~~~~~~~~~~~~~ 132 (300)
+++|+++++++... ...+|+|||++++++..++.+++
T Consensus 434 l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 434 LKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp HHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 88889999998653 34579999999999998876543
No 113
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.52 E-value=5.2e-14 Score=135.98 Aligned_cols=142 Identities=16% Similarity=0.133 Sum_probs=120.0
Q ss_pred cEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC-cC-CcccccCCCCcEEEccC
Q 037969 155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF-SL-PSSIGLLANLQTLCLDQ 232 (300)
Q Consensus 155 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~-~l-p~~i~~l~~L~~L~l~~ 232 (300)
+..+.+++.+..+|. -.++++.|++++|.+ ..+++..|.++++|++|++++|... .+ |..++++++|++|++++
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i--~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYI--RTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCC--CEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcC--CccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 467778888889998 568999999999999 6665555699999999999999544 45 78899999999999999
Q ss_pred CCCCC--cccccCCCCcCEEEccCCCCCC-Cchh--hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 233 SMLGD--IAIIGKLKNLEILSFLNSDIVR-LPGE--LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 233 ~~l~~--p~~~~~l~~L~~L~l~~~~l~~-lp~~--~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
|.+.. |..++.+++|++|++++|.++. +|.. ++++++|++|++++|...+..|...++++++|++|++
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L 155 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF 155 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence 99987 7889999999999999999884 5665 8999999999999999434334334899999999974
No 114
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.51 E-value=3.6e-13 Score=125.13 Aligned_cols=71 Identities=15% Similarity=0.141 Sum_probs=54.5
Q ss_pred CCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 223 ANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 223 ~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
++|++|++++|.+...+ ..+++|++|++++|.++.+|. .+++|+.|++++|. +..+|.. ++++++|+.|+|
T Consensus 221 ~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~-l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQ-LTRLPES-LIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CCSCCGG-GGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCC-CCcCCHH-HhhccccCEEEe
Confidence 55777777777766622 455778888888888888876 56788999999987 7788876 889999998875
No 115
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.51 E-value=7.5e-14 Score=121.32 Aligned_cols=160 Identities=21% Similarity=0.200 Sum_probs=74.7
Q ss_pred eccccccCCCccccCCccEEEeecCCCcccCcc-c-cCCCccEEecccCccccccCchhHHhcCCcccE-EEeeCCcCCc
Q 037969 138 RNEVVWEWPDEDALKKCSAISLLNSSIHEVSEE-F-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRV-IDLTRMRLFS 214 (300)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~-~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~-L~l~~~~~~~ 214 (300)
.+..+..+|. ...++++.|++++|.++.+|.. + ++++|+.|++++|.+. ..+|...|.++++++. +.+.+|+++.
T Consensus 17 ~~~~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~-~~i~~~~f~~L~~l~~~l~~~~N~l~~ 94 (350)
T 4ay9_X 17 QESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL-EVIEADVFSNLPKLHEIRIEKANNLLY 94 (350)
T ss_dssp ESTTCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC-CEECTTSBCSCTTCCEEEEEEETTCCE
T ss_pred cCCCCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC-CccChhHhhcchhhhhhhcccCCcccc
Confidence 3344455553 2234566666666666655542 2 5666666666666541 2334333344444332 3333444444
Q ss_pred C-CcccccCCCCcEEEccCCCCCC-c--------------------------ccccCC-CCcCEEEccCCCCCCCchhhc
Q 037969 215 L-PSSIGLLANLQTLCLDQSMLGD-I--------------------------AIIGKL-KNLEILSFLNSDIVRLPGELG 265 (300)
Q Consensus 215 l-p~~i~~l~~L~~L~l~~~~l~~-p--------------------------~~~~~l-~~L~~L~l~~~~l~~lp~~~~ 265 (300)
+ |..+..+++|++|++++|.+.. | ..+..+ ..+++|++++|.++.+|..+.
T Consensus 95 l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f 174 (350)
T 4ay9_X 95 INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF 174 (350)
T ss_dssp ECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSS
T ss_pred cCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhc
Confidence 3 2334444444444444443222 1 111112 234555555555555555444
Q ss_pred CCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969 266 QLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299 (300)
Q Consensus 266 ~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 299 (300)
...+|+.|++.++..++.+|.+.++.+++|++|+
T Consensus 175 ~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 175 NGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208 (350)
T ss_dssp TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred cccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence 4455555555544445555544445555555554
No 116
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=3.1e-13 Score=105.77 Aligned_cols=119 Identities=24% Similarity=0.395 Sum_probs=104.0
Q ss_pred ccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc-ccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEEc
Q 037969 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILSF 252 (300)
Q Consensus 176 L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l 252 (300)
.+.+++.++.+ ..+|..+ .++|++|++++|.++.+|. .++.+++|++|++++|.+.. + ..++.+++|++|++
T Consensus 9 ~~~l~~~~~~l--~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 9 GTEIRCNSKGL--TSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TTEEECCSSCC--SSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEecCCCC--ccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence 46788888888 8888754 4799999999999999765 46899999999999999988 4 45789999999999
Q ss_pred cCCCCCCCchh-hcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 253 LNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 253 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
++|.++.+|.. ++.+++|++|++++|. +..+|...+..+++|++|++
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l 131 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWL 131 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEe
Confidence 99999988876 6899999999999998 78888876788999999875
No 117
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.49 E-value=5e-13 Score=120.09 Aligned_cols=122 Identities=22% Similarity=0.263 Sum_probs=57.4
Q ss_pred CccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccC
Q 037969 153 KCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQ 232 (300)
Q Consensus 153 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 232 (300)
+++.|++++|.+..+|....+++|+.|++++|.+ ..+|.. ..+|++|++++|.++.+| .++.+++|++|++++
T Consensus 132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l--~~lp~~----~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL--KKLPDL----PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCC--SCCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCEEECcCCCCCCCcccCCCCCCCEEECCCCcC--cccCCC----cccccEEECcCCcCCcCc-cccCCCCCCEEECCC
Confidence 4444444444444444322444444444444444 333331 124444444444444444 344555555555555
Q ss_pred CCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccch
Q 037969 233 SMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVP 286 (300)
Q Consensus 233 ~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 286 (300)
|.+.. |.. .++|++|++++|.++.+| .++.+++|++|++++|. +..+|.
T Consensus 205 N~l~~l~~~---~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~l~~ 254 (454)
T 1jl5_A 205 NSLKKLPDL---PLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNL-LKTLPD 254 (454)
T ss_dssp SCCSSCCCC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSSCCS
T ss_pred CcCCcCCCC---cCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCc-CCcccc
Confidence 55444 221 134555555555555555 25555555666665555 444443
No 118
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.49 E-value=1.6e-13 Score=126.10 Aligned_cols=142 Identities=18% Similarity=0.205 Sum_probs=118.6
Q ss_pred EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969 135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 214 (300)
..+.++.+..+|. ...+++.|++++|.+..+|. .+++|+.|++++|.+ ..+|. .+++|++|++++|.++.
T Consensus 105 L~Ls~N~l~~ip~--l~~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l--~~lp~----~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 105 LDACDNRLSTLPE--LPASLKHLDVDNNQLTMLPE--LPALLEYINADNNQL--TMLPE----LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp EECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCC--SCCCC----CCTTCCEEECCSSCCSC
T ss_pred EEccCCCCCCcch--hhcCCCEEECCCCcCCCCCC--cCccccEEeCCCCcc--CcCCC----cCCCcCEEECCCCCCCC
Confidence 4455566666666 33389999999999988888 789999999999999 77886 57899999999999999
Q ss_pred CCcccccCCCCcEEEccCCCCCC-cccccCCCCc-------CEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccch
Q 037969 215 LPSSIGLLANLQTLCLDQSMLGD-IAIIGKLKNL-------EILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVP 286 (300)
Q Consensus 215 lp~~i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L-------~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~ 286 (300)
+|. ++ ++|++|++++|.++. |. +.. +| +.|++++|.++.+|..+.++++|+.|++++|...+.+|.
T Consensus 175 lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 175 LPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred cch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 988 66 899999999999988 66 554 77 999999999999999999999999999999996666665
Q ss_pred hhhcCCC
Q 037969 287 NVLSSFT 293 (300)
Q Consensus 287 ~~l~~L~ 293 (300)
. ++.++
T Consensus 249 ~-l~~l~ 254 (571)
T 3cvr_A 249 S-LSQQT 254 (571)
T ss_dssp H-HHHHH
T ss_pred H-HHHhh
Confidence 4 55543
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.48 E-value=1.8e-13 Score=126.10 Aligned_cols=119 Identities=17% Similarity=0.234 Sum_probs=107.4
Q ss_pred CccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccC
Q 037969 153 KCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQ 232 (300)
Q Consensus 153 ~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~ 232 (300)
.++.|++++|.+..+|....+++|+.|++++|.+ ..+|..+ +.+++|++|++++|.++.+| .++.+++|++|++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l--~~lp~~~-~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRL--RALPPAL-AALRCLEVLQASDNALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCC--CCCCGGG-GGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcCccccccCcEeecCcccc--cccchhh-hcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence 5889999999998899856999999999999999 7999876 89999999999999999998 899999999999999
Q ss_pred CCCCC---cccccCCCCcCEEEccCCCCCCCchhh----cCCCCCCEEec
Q 037969 233 SMLGD---IAIIGKLKNLEILSFLNSDIVRLPGEL----GQLTKLRLLDL 275 (300)
Q Consensus 233 ~~l~~---p~~~~~l~~L~~L~l~~~~l~~lp~~~----~~l~~L~~L~l 275 (300)
|.+.. |..++.+++|++|++++|.++.+|+.+ ..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99886 578999999999999999999887653 34889998864
No 120
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.46 E-value=4.8e-14 Score=121.61 Aligned_cols=149 Identities=17% Similarity=0.207 Sum_probs=88.2
Q ss_pred ccCCccEEEeecCCCc-ccCccc-cCCCccEEecccC-ccccc-cCchhHHhcCCcccEEEeeCC-cCCc--CCcccccC
Q 037969 150 ALKKCSAISLLNSSIH-EVSEEF-ECLQLEFLHISQN-TFVEV-NIPDNIFKGMKTLRVIDLTRM-RLFS--LPSSIGLL 222 (300)
Q Consensus 150 ~~~~l~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~-~~~~~-~l~~~~~~~l~~L~~L~l~~~-~~~~--lp~~i~~l 222 (300)
.+++++.|++.+|.+. ..+..+ .+++|++|++.+| .+ .. .++. ++..+++|++|++++| .++. +|..++.+
T Consensus 116 ~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l-~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l 193 (336)
T 2ast_B 116 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGF-SEFALQT-LLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193 (336)
T ss_dssp TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSC-CHHHHHH-HHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred hCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCC-CHHHHHH-HHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence 3455666666666552 233222 5666677776666 33 11 2333 2356677777777777 6664 45556667
Q ss_pred C-CCcEEEccCC--CCCC---cccccCCCCcCEEEccCCC-CC-CCchhhcCCCCCCEEeccCCCCccccchhhhcCCCC
Q 037969 223 A-NLQTLCLDQS--MLGD---IAIIGKLKNLEILSFLNSD-IV-RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR 294 (300)
Q Consensus 223 ~-~L~~L~l~~~--~l~~---p~~~~~l~~L~~L~l~~~~-l~-~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~ 294 (300)
+ +|++|++++| .+.. +..+..+++|++|++++|. ++ ..+..++++++|++|++++|..+.......++++++
T Consensus 194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 7 7777777777 3432 4555667777777777776 44 455567777777777777775222111112666777
Q ss_pred CCeeeC
Q 037969 295 LEELYM 300 (300)
Q Consensus 295 L~~L~l 300 (300)
|++|++
T Consensus 274 L~~L~l 279 (336)
T 2ast_B 274 LKTLQV 279 (336)
T ss_dssp CCEEEC
T ss_pred CCEEec
Confidence 777764
No 121
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.46 E-value=1.6e-12 Score=116.90 Aligned_cols=149 Identities=19% Similarity=0.297 Sum_probs=106.7
Q ss_pred EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969 135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 214 (300)
..+..+.+..+|. ..++++.|++++|.+..++... ++|++|++++|.+ ..+|. ++.+++|++|++++|.++.
T Consensus 96 L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l--~~lp~--~~~l~~L~~L~l~~N~l~~ 167 (454)
T 1jl5_A 96 LVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQL--EKLPE--LQNSSFLKIIDVDNNSLKK 167 (454)
T ss_dssp EECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCC--SSCCC--CTTCTTCCEEECCSSCCSC
T ss_pred EEccCCcCCcccc--ccCCCcEEECCCCccCcccCCC--CCCCEEECcCCCC--CCCcc--cCCCCCCCEEECCCCcCcc
Confidence 3344444555553 3467788888888776665432 6788888888887 66774 4778888888888888887
Q ss_pred CCcccccCCCCcEEEccCCCCCCcccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCC
Q 037969 215 LPSSIGLLANLQTLCLDQSMLGDIAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR 294 (300)
Q Consensus 215 lp~~i~~l~~L~~L~l~~~~l~~p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~ 294 (300)
+|..+ .+|++|++++|.+...+.++.+++|++|++++|.++.+|... ++|++|++++|. +..+|. ++.+++
T Consensus 168 lp~~~---~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~-l~~lp~--~~~l~~ 238 (454)
T 1jl5_A 168 LPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNI-LEELPE--LQNLPF 238 (454)
T ss_dssp CCCCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSC-CSSCCC--CTTCTT
T ss_pred cCCCc---ccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCc-CCcccc--cCCCCC
Confidence 77643 478888888888777336788888888888888887776533 578888888887 667774 778888
Q ss_pred CCeeeC
Q 037969 295 LEELYM 300 (300)
Q Consensus 295 L~~L~l 300 (300)
|++|++
T Consensus 239 L~~L~l 244 (454)
T 1jl5_A 239 LTTIYA 244 (454)
T ss_dssp CCEEEC
T ss_pred CCEEEC
Confidence 887764
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.46 E-value=1.4e-12 Score=121.21 Aligned_cols=90 Identities=17% Similarity=0.166 Sum_probs=60.6
Q ss_pred EEEeccccccCCCccccCCccEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc
Q 037969 135 FLVRNEVVWEWPDEDALKKCSAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS 214 (300)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~ 214 (300)
..+.++.+..+|. .+++++.|++++|.+..+|. .+++|+.|++++|.+ ..+|. .+++|+.|++++|.++.
T Consensus 66 L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l--~~l~~----~l~~L~~L~L~~N~l~~ 135 (622)
T 3g06_A 66 LVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPL--THLPA----LPSGLCKLWIFGNQLTS 135 (622)
T ss_dssp EEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCC--CCCCC----CCTTCCEEECCSSCCSC
T ss_pred EEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcC--CCCCC----CCCCcCEEECCCCCCCc
Confidence 4455555555554 46677777777777766666 667777777777777 66665 35667777777777777
Q ss_pred CCcccccCCCCcEEEccCCCCCC
Q 037969 215 LPSSIGLLANLQTLCLDQSMLGD 237 (300)
Q Consensus 215 lp~~i~~l~~L~~L~l~~~~l~~ 237 (300)
+|.. +++|++|++++|.+..
T Consensus 136 lp~~---l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 136 LPVL---PPGLQELSVSDNQLAS 155 (622)
T ss_dssp CCCC---CTTCCEEECCSSCCSC
T ss_pred CCCC---CCCCCEEECcCCcCCC
Confidence 7654 3677777887777665
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=1.3e-13 Score=118.90 Aligned_cols=149 Identities=16% Similarity=0.207 Sum_probs=89.3
Q ss_pred cccCCccEEEeecCCCcc--cCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCC-cCCc--CCcccccC
Q 037969 149 DALKKCSAISLLNSSIHE--VSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRM-RLFS--LPSSIGLL 222 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~-~~~~--lp~~i~~l 222 (300)
..+++++.|++++|.+.. ++... .+++|+.|++.+|.+ ....+..+ ..+++|++|++++| .++. +|..+..+
T Consensus 90 ~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l-~~~~~~~l-~~~~~L~~L~L~~~~~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 90 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL-SDPIVNTL-AKNSNLVRLNLSGCSGFSEFALQTLLSSC 167 (336)
T ss_dssp CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBC-CHHHHHHH-TTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCccc-CHHHHHHH-hcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence 345666777777666532 44433 666777777776665 12334333 55677777777776 4553 45556666
Q ss_pred CCCcEEEccCC-CCCC---cccccCCC-CcCEEEccCC--CCC--CCchhhcCCCCCCEEeccCCCCc-cccchhhhcCC
Q 037969 223 ANLQTLCLDQS-MLGD---IAIIGKLK-NLEILSFLNS--DIV--RLPGELGQLTKLRLLDLTDCLQL-KFIVPNVLSSF 292 (300)
Q Consensus 223 ~~L~~L~l~~~-~l~~---p~~~~~l~-~L~~L~l~~~--~l~--~lp~~~~~l~~L~~L~l~~~~~l-~~lp~~~l~~L 292 (300)
++|++|++++| .+.. +..+..++ +|++|++++| .++ .+|..+.++++|++|++++|..+ ...+.. ++.+
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l 246 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQL 246 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGC
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCC
Confidence 77777777776 5653 34456666 7777777776 332 45555666677777777776632 233443 6666
Q ss_pred CCCCeeeC
Q 037969 293 TRLEELYM 300 (300)
Q Consensus 293 ~~L~~L~l 300 (300)
++|++|++
T Consensus 247 ~~L~~L~l 254 (336)
T 2ast_B 247 NYLQHLSL 254 (336)
T ss_dssp TTCCEEEC
T ss_pred CCCCEeeC
Confidence 77776654
No 124
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=7.5e-13 Score=103.29 Aligned_cols=105 Identities=16% Similarity=0.233 Sum_probs=66.3
Q ss_pred cEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcc-cccCCCCcEEEccCC
Q 037969 155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS-IGLLANLQTLCLDQS 233 (300)
Q Consensus 155 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~ 233 (300)
+.++++++.+..+|..+. ++|+.|++++|.+ ..+++..|..+++|++|+|++|.++.+|.. ++.+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~l--~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQI--TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSCC--CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCCc--cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 456666666666665443 6666777776666 555544456666777777777766666544 456666777777666
Q ss_pred CCCC-cc-cccCCCCcCEEEccCCCCCCCch
Q 037969 234 MLGD-IA-IIGKLKNLEILSFLNSDIVRLPG 262 (300)
Q Consensus 234 ~l~~-p~-~~~~l~~L~~L~l~~~~l~~lp~ 262 (300)
.+.. |+ .+..+++|++|++++|.+...|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 6666 43 36666667777776666665544
No 125
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=1.6e-12 Score=101.38 Aligned_cols=105 Identities=18% Similarity=0.242 Sum_probs=87.4
Q ss_pred ccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEEccCCCCCC-ccc-ccCCCCcCEEEc
Q 037969 176 LEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQSMLGD-IAI-IGKLKNLEILSF 252 (300)
Q Consensus 176 L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~-p~~-~~~l~~L~~L~l 252 (300)
-+.++++++.+ ..+|..+ ..+|++|++++|.++.+ |..++.+++|++|++++|.+.. |+. +..+++|++|++
T Consensus 14 ~~~l~~~~n~l--~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 14 QTLVNCQNIRL--ASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SSEEECCSSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCC--CccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 36788888888 8888865 37899999999999987 5678899999999999999888 544 578999999999
Q ss_pred cCCCCCCCchh-hcCCCCCCEEeccCCCCccccch
Q 037969 253 LNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIVP 286 (300)
Q Consensus 253 ~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp~ 286 (300)
++|.++.+|.. +..+++|++|++++|+ +...+.
T Consensus 89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~c~~~ 122 (174)
T 2r9u_A 89 NDNHLKSIPRGAFDNLKSLTHIYLYNNP-WDCECR 122 (174)
T ss_dssp CSSCCCCCCTTTTTTCTTCSEEECCSSC-BCTTBG
T ss_pred CCCccceeCHHHhccccCCCEEEeCCCC-cccccc
Confidence 99999988876 8889999999999988 555554
No 126
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=2.4e-12 Score=99.98 Aligned_cols=101 Identities=21% Similarity=0.311 Sum_probs=60.2
Q ss_pred cEEEeecCCCcccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcc-cccCCCCcEEEccCC
Q 037969 155 SAISLLNSSIHEVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS-IGLLANLQTLCLDQS 233 (300)
Q Consensus 155 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~ 233 (300)
+.++++++.+..+|..+ .++++.|++++|.+ ..+++..|..+++|++|++++|.++.+|+. +..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~i--~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI-PTTTQVLYLYDNQI--TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSSCC--CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC-CCCCcEEEcCCCcC--CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45666666666666543 25666666666666 555444445666666666666666665443 456666666666666
Q ss_pred CCCC-c-ccccCCCCcCEEEccCCCCC
Q 037969 234 MLGD-I-AIIGKLKNLEILSFLNSDIV 258 (300)
Q Consensus 234 ~l~~-p-~~~~~l~~L~~L~l~~~~l~ 258 (300)
.+.. | ..+..+++|++|++++|.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6665 3 33556666666666666554
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.38 E-value=3.2e-13 Score=118.86 Aligned_cols=151 Identities=13% Similarity=0.156 Sum_probs=112.5
Q ss_pred cccCCccEEEeecCCCcc-----cCccc-cC---------CCccEEecccCccccccCch--hHHhcCCcccEEEeeCCc
Q 037969 149 DALKKCSAISLLNSSIHE-----VSEEF-EC---------LQLEFLHISQNTFVEVNIPD--NIFKGMKTLRVIDLTRMR 211 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~-----~~~~~-~~---------~~L~~L~l~~~~~~~~~l~~--~~~~~l~~L~~L~l~~~~ 211 (300)
...++++.|++++|.+.. ++... .+ ++|++|++++|.+....++. ..+..+++|++|++++|.
T Consensus 119 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 198 (386)
T 2ca6_A 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNG 198 (386)
T ss_dssp HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCC
Confidence 456788899999888732 22211 33 88999999988872223442 224678899999999998
Q ss_pred CCc------CCcccccCCCCcEEEccCCCCC-----C-cccccCCCCcCEEEccCCCCCC-----Cchhh--cCCCCCCE
Q 037969 212 LFS------LPSSIGLLANLQTLCLDQSMLG-----D-IAIIGKLKNLEILSFLNSDIVR-----LPGEL--GQLTKLRL 272 (300)
Q Consensus 212 ~~~------lp~~i~~l~~L~~L~l~~~~l~-----~-p~~~~~l~~L~~L~l~~~~l~~-----lp~~~--~~l~~L~~ 272 (300)
++. .|..+..+++|++|++++|.+. . |..+..+++|++|++++|.++. +|..+ +++++|++
T Consensus 199 l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~ 278 (386)
T 2ca6_A 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQT 278 (386)
T ss_dssp CCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCE
T ss_pred CCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEE
Confidence 872 3447888899999999999884 3 6778889999999999998874 46666 44899999
Q ss_pred EeccCCCCccc-----cchhhhcCCCCCCeeeC
Q 037969 273 LDLTDCLQLKF-----IVPNVLSSFTRLEELYM 300 (300)
Q Consensus 273 L~l~~~~~l~~-----lp~~~l~~L~~L~~L~l 300 (300)
|++++|. +.. +|.....++++|++|++
T Consensus 279 L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 279 LRLQYNE-IELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp EECCSSC-CBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred EECcCCc-CCHHHHHHHHHHHHhcCCCceEEEc
Confidence 9999998 554 88763377899998875
No 128
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.38 E-value=2.3e-12 Score=100.16 Aligned_cols=105 Identities=22% Similarity=0.278 Sum_probs=91.9
Q ss_pred CccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEEccCCCCCC-c-ccccCCCCcCEEE
Q 037969 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQSMLGD-I-AIIGKLKNLEILS 251 (300)
Q Consensus 175 ~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~ 251 (300)
..+.++++++.+ ..+|..+ .+.|++|++++|.++.+ |..++.+++|++|++++|.+.. | ..+..+++|++|+
T Consensus 10 ~~~~l~~s~n~l--~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 10 SGTTVDCSGKSL--ASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp ETTEEECTTSCC--SSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCEEEeCCCCc--CccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 357899999999 8899865 48899999999999997 6679999999999999999998 5 4568999999999
Q ss_pred ccCCCCCCCchh-hcCCCCCCEEeccCCCCccccc
Q 037969 252 FLNSDIVRLPGE-LGQLTKLRLLDLTDCLQLKFIV 285 (300)
Q Consensus 252 l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~l~~lp 285 (300)
+++|.++.+|.. +.++++|++|++++|+ +...+
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-~~c~c 118 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNP-WDCAC 118 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSC-BCTTB
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCC-CCCCc
Confidence 999999999875 8899999999999998 44443
No 129
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.38 E-value=3e-12 Score=111.14 Aligned_cols=158 Identities=20% Similarity=0.201 Sum_probs=124.2
Q ss_pred EeccccccCCCc--cccCCccEEEeecCCCcccCccc--cCCCccEEeccc-CccccccCchhHHhcC-CcccEEEeeCC
Q 037969 137 VRNEVVWEWPDE--DALKKCSAISLLNSSIHEVSEEF--ECLQLEFLHISQ-NTFVEVNIPDNIFKGM-KTLRVIDLTRM 210 (300)
Q Consensus 137 ~~~~~~~~~~~~--~~~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~-~~~~~~~l~~~~~~~l-~~L~~L~l~~~ 210 (300)
...+.+..++.. ..+++++.|++++|.+..++... ...++..+++.+ +.+ ..++...|..+ ..+++|++++|
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i--~~l~~~~f~~~~~~l~~L~L~~N 164 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI--HTIERNSFVGLSFESVILWLNKN 164 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTC--CEECTTSSTTSBSSCEEEECCSS
T ss_pred ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccc--ccccccchhhcchhhhhhccccc
Confidence 333445444332 56788999999999998777654 556677788765 455 66776555555 46899999999
Q ss_pred cCCcCCcccccCCCCcEEEccC-CCCCC-c-ccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchh
Q 037969 211 RLFSLPSSIGLLANLQTLCLDQ-SMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPN 287 (300)
Q Consensus 211 ~~~~lp~~i~~l~~L~~L~l~~-~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~ 287 (300)
.++.+|..+....+|+.+++.+ |.+.. | ..+..+++|++|++++|+++.+|.. .+.+|+.|.+.++..++.+|.
T Consensus 165 ~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~- 241 (350)
T 4ay9_X 165 GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPT- 241 (350)
T ss_dssp CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCC-
T ss_pred cccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCC-
Confidence 9999988877888999999975 56777 5 4578999999999999999999974 477888888888888999996
Q ss_pred hhcCCCCCCeeeC
Q 037969 288 VLSSFTRLEELYM 300 (300)
Q Consensus 288 ~l~~L~~L~~L~l 300 (300)
+..+++|+.+++
T Consensus 242 -l~~l~~L~~l~l 253 (350)
T 4ay9_X 242 -LEKLVALMEASL 253 (350)
T ss_dssp -TTTCCSCCEEEC
T ss_pred -chhCcChhhCcC
Confidence 889999998864
No 130
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.36 E-value=8.7e-13 Score=116.08 Aligned_cols=147 Identities=21% Similarity=0.258 Sum_probs=113.4
Q ss_pred ccCCccEEEeecCCCcc-----cCccc-cCCCccEEecccCccccccCch-hH---HhcC---------CcccEEEeeCC
Q 037969 150 ALKKCSAISLLNSSIHE-----VSEEF-ECLQLEFLHISQNTFVEVNIPD-NI---FKGM---------KTLRVIDLTRM 210 (300)
Q Consensus 150 ~~~~l~~L~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~l~~-~~---~~~l---------~~L~~L~l~~~ 210 (300)
.+++++.|++++|.+.. ++..+ .+++|++|++++|.+ ..... .+ +..+ ++|++|++++|
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l--~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL--GPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC--HHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC--CHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 46789999999998854 55554 789999999999987 42221 11 1333 89999999999
Q ss_pred cCCc--CC---cccccCCCCcEEEccCCCCCC-------cccccCCCCcCEEEccCCCC-----CCCchhhcCCCCCCEE
Q 037969 211 RLFS--LP---SSIGLLANLQTLCLDQSMLGD-------IAIIGKLKNLEILSFLNSDI-----VRLPGELGQLTKLRLL 273 (300)
Q Consensus 211 ~~~~--lp---~~i~~l~~L~~L~l~~~~l~~-------p~~~~~l~~L~~L~l~~~~l-----~~lp~~~~~l~~L~~L 273 (300)
.++. +| ..+..+++|++|++++|.+.. +..+..+++|++|++++|.+ ..+|..+..+++|++|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 9873 44 467788899999999998872 23788899999999999988 5688889999999999
Q ss_pred eccCCCCccc-----cchhhh--cCCCCCCeeeC
Q 037969 274 DLTDCLQLKF-----IVPNVL--SSFTRLEELYM 300 (300)
Q Consensus 274 ~l~~~~~l~~-----lp~~~l--~~L~~L~~L~l 300 (300)
++++|. ++. +|.. + +.+++|++|+|
T Consensus 250 ~L~~n~-i~~~~~~~l~~~-l~~~~~~~L~~L~L 281 (386)
T 2ca6_A 250 GLNDCL-LSARGAAAVVDA-FSKLENIGLQTLRL 281 (386)
T ss_dssp ECTTCC-CCHHHHHHHHHH-HHTCSSCCCCEEEC
T ss_pred ECCCCC-CchhhHHHHHHH-HhhccCCCeEEEEC
Confidence 999998 443 3443 5 44899999875
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=2.1e-14 Score=114.65 Aligned_cols=108 Identities=19% Similarity=0.301 Sum_probs=95.1
Q ss_pred ccCchhHHhcCCcccEEEeeCCcCCcCCcccccCCCCcEEEccCCCCCC-cccccCCCCcCEEEccCCCCCCCchhhcCC
Q 037969 189 VNIPDNIFKGMKTLRVIDLTRMRLFSLPSSIGLLANLQTLCLDQSMLGD-IAIIGKLKNLEILSFLNSDIVRLPGELGQL 267 (300)
Q Consensus 189 ~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~l~~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l 267 (300)
..+|..+ ..+++|++|++++|.++.+| .++.+++|++|++++|.+.. |..+..+++|++|++++|.++.+| .++.+
T Consensus 38 ~~l~~~~-~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l 114 (198)
T 1ds9_A 38 EKMDATL-STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKL 114 (198)
T ss_dssp CCCHHHH-HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred hhhhHHH-hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence 4455554 89999999999999999998 89999999999999999988 777778899999999999999987 68999
Q ss_pred CCCCEEeccCCCCccccch-hhhcCCCCCCeeeC
Q 037969 268 TKLRLLDLTDCLQLKFIVP-NVLSSFTRLEELYM 300 (300)
Q Consensus 268 ~~L~~L~l~~~~~l~~lp~-~~l~~L~~L~~L~l 300 (300)
++|++|++++|. +..+|. ..+..+++|++|++
T Consensus 115 ~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 115 VNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp HHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEE
T ss_pred CCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEe
Confidence 999999999998 777664 34889999999874
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.30 E-value=3.6e-12 Score=111.18 Aligned_cols=147 Identities=20% Similarity=0.260 Sum_probs=99.5
Q ss_pred ccC-CccEEEeecCCCcccC-ccc-cC-----CCccEEecccCccccccCchh-H---HhcC-CcccEEEeeCCcCCcCC
Q 037969 150 ALK-KCSAISLLNSSIHEVS-EEF-EC-----LQLEFLHISQNTFVEVNIPDN-I---FKGM-KTLRVIDLTRMRLFSLP 216 (300)
Q Consensus 150 ~~~-~l~~L~l~~~~~~~~~-~~~-~~-----~~L~~L~l~~~~~~~~~l~~~-~---~~~l-~~L~~L~l~~~~~~~lp 216 (300)
.++ +++.|++++|.+.... ..+ .+ ++|+.|++++|.+ ...+.. + +..+ ++|++|++++|.++..+
T Consensus 48 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 125 (362)
T 3goz_A 48 NTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL--SYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS 125 (362)
T ss_dssp TCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG--GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC
T ss_pred hCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC--ChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH
Confidence 344 7888888888885432 222 32 8888999988887 444433 2 2333 78899999988887754
Q ss_pred c-cc----cc-CCCCcEEEccCCCCCC------cccccCCC-CcCEEEccCCCCCCCch-----hhcCC-CCCCEEeccC
Q 037969 217 S-SI----GL-LANLQTLCLDQSMLGD------IAIIGKLK-NLEILSFLNSDIVRLPG-----ELGQL-TKLRLLDLTD 277 (300)
Q Consensus 217 ~-~i----~~-l~~L~~L~l~~~~l~~------p~~~~~l~-~L~~L~l~~~~l~~lp~-----~~~~l-~~L~~L~l~~ 277 (300)
. .+ .. ..+|++|++++|.+.. +..+..++ +|++|++++|.++..+. .+... ++|++|++++
T Consensus 126 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 126 SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA 205 (362)
T ss_dssp HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC
Confidence 3 33 23 2589999999888773 24445565 89999999988874432 34455 5899999999
Q ss_pred CCCccc-----cchhhhcC-CCCCCeeeC
Q 037969 278 CLQLKF-----IVPNVLSS-FTRLEELYM 300 (300)
Q Consensus 278 ~~~l~~-----lp~~~l~~-L~~L~~L~l 300 (300)
|. ++. ++.. +.. .++|++|+|
T Consensus 206 N~-i~~~~~~~l~~~-l~~~~~~L~~L~L 232 (362)
T 3goz_A 206 NL-LGLKSYAELAYI-FSSIPNHVVSLNL 232 (362)
T ss_dssp SC-GGGSCHHHHHHH-HHHSCTTCCEEEC
T ss_pred CC-CChhHHHHHHHH-HhcCCCCceEEEC
Confidence 88 555 5655 444 458888875
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.27 E-value=5.2e-12 Score=110.17 Aligned_cols=79 Identities=16% Similarity=0.144 Sum_probs=33.8
Q ss_pred cccEEEeeCCcCCcCC-cc----cccC-CCCcEEEccCCCCCC------cccccC-CCCcCEEEccCCCCCCCch-----
Q 037969 201 TLRVIDLTRMRLFSLP-SS----IGLL-ANLQTLCLDQSMLGD------IAIIGK-LKNLEILSFLNSDIVRLPG----- 262 (300)
Q Consensus 201 ~L~~L~l~~~~~~~lp-~~----i~~l-~~L~~L~l~~~~l~~------p~~~~~-l~~L~~L~l~~~~l~~lp~----- 262 (300)
+|++|++++|.++..+ .. +... ++|++|++++|.+.. +..+.. .++|++|++++|.++..+.
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 247 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKL 247 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHH
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHH
Confidence 4555555555544321 11 2222 345555555554433 122222 2345555555554443221
Q ss_pred hhcCCCCCCEEeccCCC
Q 037969 263 ELGQLTKLRLLDLTDCL 279 (300)
Q Consensus 263 ~~~~l~~L~~L~l~~~~ 279 (300)
.+..+++|++|++++|.
T Consensus 248 ~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTTTTTTCSEEEEEHHH
T ss_pred HHhcCCCccEEEeccCC
Confidence 12344455555555544
No 134
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.19 E-value=8.4e-12 Score=112.16 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=82.6
Q ss_pred cCCccEEEeecCCCcc--cCccc-cCC----CccEEecccCccccc-----cCchhHHhcCCcccEEEeeCCcCCcC-Cc
Q 037969 151 LKKCSAISLLNSSIHE--VSEEF-ECL----QLEFLHISQNTFVEV-----NIPDNIFKGMKTLRVIDLTRMRLFSL-PS 217 (300)
Q Consensus 151 ~~~l~~L~l~~~~~~~--~~~~~-~~~----~L~~L~l~~~~~~~~-----~l~~~~~~~l~~L~~L~l~~~~~~~l-p~ 217 (300)
.++++.|++++|.+.. +.... .++ +|++|++++|.+ . .++.. +..+++|++|++++|.++.. +.
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i--~~~~~~~l~~~-l~~~~~L~~L~Ls~n~i~~~~~~ 131 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL--TGAGCGVLSST-LRTLPTLQELHLSDNLLGDAGLQ 131 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCC--BGGGHHHHHHH-TTSCTTCCEEECCSSBCHHHHHH
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCC--CHHHHHHHHHH-HccCCceeEEECCCCcCchHHHH
Confidence 4566777777766632 11111 233 577777777666 3 22332 35666777777777766532 22
Q ss_pred ccc-----cCCCCcEEEccCCCCCC------cccccCCCCcCEEEccCCCCCCC-chhhc-----CCCCCCEEeccCCCC
Q 037969 218 SIG-----LLANLQTLCLDQSMLGD------IAIIGKLKNLEILSFLNSDIVRL-PGELG-----QLTKLRLLDLTDCLQ 280 (300)
Q Consensus 218 ~i~-----~l~~L~~L~l~~~~l~~------p~~~~~l~~L~~L~l~~~~l~~l-p~~~~-----~l~~L~~L~l~~~~~ 280 (300)
.+. ...+|++|++++|.+.. +..+..+++|++|++++|.+... +..+. ..++|++|++++|.
T Consensus 132 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~- 210 (461)
T 1z7x_W 132 LLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG- 210 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC-
T ss_pred HHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC-
Confidence 221 24457777777776654 24445567777777777766522 11222 35577777777776
Q ss_pred ccc-----cchhhhcCCCCCCeeeC
Q 037969 281 LKF-----IVPNVLSSFTRLEELYM 300 (300)
Q Consensus 281 l~~-----lp~~~l~~L~~L~~L~l 300 (300)
++. ++.. +..+++|++|++
T Consensus 211 l~~~~~~~l~~~-l~~~~~L~~L~L 234 (461)
T 1z7x_W 211 VTSDNCRDLCGI-VASKASLRELAL 234 (461)
T ss_dssp CBTTHHHHHHHH-HHHCTTCCEEEC
T ss_pred CcHHHHHHHHHH-HHhCCCccEEec
Confidence 443 3443 667788887764
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.15 E-value=1e-11 Score=111.56 Aligned_cols=76 Identities=24% Similarity=0.281 Sum_probs=40.7
Q ss_pred CCCcEEEccCCCCCC------cccccCCCCcCEEEccCCCCCCC-chhhcC-----CCCCCEEeccCCCCcc-----ccc
Q 037969 223 ANLQTLCLDQSMLGD------IAIIGKLKNLEILSFLNSDIVRL-PGELGQ-----LTKLRLLDLTDCLQLK-----FIV 285 (300)
Q Consensus 223 ~~L~~L~l~~~~l~~------p~~~~~l~~L~~L~l~~~~l~~l-p~~~~~-----l~~L~~L~l~~~~~l~-----~lp 285 (300)
++|++|++++|.+.. +..+..+++|++|++++|.++.. +..+.. .++|++|++++|. ++ .+|
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~ 391 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLA 391 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHH
Confidence 345555555555442 13334456666666666655422 222221 4567777777766 33 455
Q ss_pred hhhhcCCCCCCeeeC
Q 037969 286 PNVLSSFTRLEELYM 300 (300)
Q Consensus 286 ~~~l~~L~~L~~L~l 300 (300)
.. +..+++|++|++
T Consensus 392 ~~-l~~~~~L~~L~l 405 (461)
T 1z7x_W 392 AT-LLANHSLRELDL 405 (461)
T ss_dssp HH-HHHCCCCCEEEC
T ss_pred HH-HHhCCCccEEEC
Confidence 54 666677776654
No 136
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.14 E-value=6.7e-12 Score=119.91 Aligned_cols=98 Identities=19% Similarity=0.237 Sum_probs=78.8
Q ss_pred CcccCCC--ChhHHHHHHHHhcCCCCCCCCCCCcccccceeeccccCCchhH-HHHHHHhhhcCCCCCHH--HHHhhhhh
Q 037969 1 ARALRNK--SLHEWKNALRELQTPSVVNFEGVPAETYSSIELSFKYLKGEQL-KKIFLLCSLIGNSFWFT--DLFKYSMG 75 (300)
Q Consensus 1 g~~L~~k--~~~~W~~~l~~l~~~~~~~~~~~~~~i~~~l~lsy~~L~~~~l-k~cfl~~a~fp~~~~~~--~Li~~w~a 75 (300)
|+.|+++ +.++|+.+ + ...+..++++||+.||++ + |.||+|||+||+++.|. .++.+|++
T Consensus 334 Gs~Lr~k~~s~eeW~~~----------~----~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~a 398 (1221)
T 1vt4_I 334 AESIRDGLATWDNWKHV----------N----CDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFD 398 (1221)
T ss_dssp HHHHHHSCSSHHHHHHC----------S----CHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCS
T ss_pred HHHHhCCCCCHHHHhcC----------C----hhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcC
Confidence 3456666 67888753 1 234999999999999999 8 99999999999999998 68999999
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHhcccccCCCCCcEEechhHHHHH
Q 037969 76 LGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSSEQFSMHDVVYDVV 124 (300)
Q Consensus 76 eg~i~~~~~~e~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~hdl~~~~~ 124 (300)
+|. ++ ..+++++|+++|+++..+...+|+|||+++++.
T Consensus 399 eGe-------ed----Ae~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 399 VIK-------SD----VMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp SCS-------HH----HHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred CCH-------HH----HHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 871 22 345688888999998765567899999998865
No 137
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.12 E-value=2.4e-11 Score=121.75 Aligned_cols=116 Identities=16% Similarity=0.199 Sum_probs=86.9
Q ss_pred cccCCCChhHHHHHHHHhcCCCCCCCCCC----CcccccceeeccccCCchhHHHHHHHhhhcCCCCCHH--HHHhhhhh
Q 037969 2 RALRNKSLHEWKNALRELQTPSVVNFEGV----PAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWFT--DLFKYSMG 75 (300)
Q Consensus 2 ~~L~~k~~~~W~~~l~~l~~~~~~~~~~~----~~~i~~~l~lsy~~L~~~~lk~cfl~~a~fp~~~~~~--~Li~~w~a 75 (300)
+.|+.++ ..|+..++.+.......+... ...+..++.+||+.||++ +|.||+|||+||+++.|+ .++.+|.+
T Consensus 329 ~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~ 406 (1249)
T 3sfz_A 329 ALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDL 406 (1249)
T ss_dssp HHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTC
T ss_pred HHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCC
Confidence 4455554 579999999866443322111 134889999999999999 999999999999999998 88999976
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHhcccccCCCC--CcEEechhHHHHHHHHhhcC
Q 037969 76 LGIFQGVNRMVDARNKLYALVHELRDSCLLLEGDSS--EQFSMHDVVYDVVVSIACRD 131 (300)
Q Consensus 76 eg~i~~~~~~e~~~~~~~~~~~~L~~~~~~~~~~~~--~~~~~hdl~~~~~~~~~~~~ 131 (300)
++ + .+.+++++|+++++++..... .+|+||+++++++...+.++
T Consensus 407 ~~--------~----~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 407 ET--------E----EVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CH--------H----HHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred CH--------H----HHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 52 2 234557888889999855322 25999999999998876543
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.11 E-value=2.1e-10 Score=99.28 Aligned_cols=101 Identities=18% Similarity=0.119 Sum_probs=86.8
Q ss_pred EEecccC-ccccccCchhHHhcCCcccEEEeeC-CcCCcCC-cccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEc
Q 037969 178 FLHISQN-TFVEVNIPDNIFKGMKTLRVIDLTR-MRLFSLP-SSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSF 252 (300)
Q Consensus 178 ~L~l~~~-~~~~~~l~~~~~~~l~~L~~L~l~~-~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l 252 (300)
.++..++ .+ ..+|. + ..+.+|++|+|++ |.++.+| ..++.+.+|++|+|++|.+.. |..++.+++|++|+|
T Consensus 12 ~v~~~~~n~l--~~ip~-l-~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGAL--DSLHH-L-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCC--TTTTT-S-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCC--CccCC-C-CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 4577777 77 78998 4 8899999999996 9999976 579999999999999999988 467899999999999
Q ss_pred cCCCCCCCchhhcCCCCCCEEeccCCCCccc
Q 037969 253 LNSDIVRLPGELGQLTKLRLLDLTDCLQLKF 283 (300)
Q Consensus 253 ~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~ 283 (300)
++|.++.+|..+.....|+.|++.+|. +..
T Consensus 88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~-~~c 117 (347)
T 2ifg_A 88 SFNALESLSWKTVQGLSLQELVLSGNP-LHC 117 (347)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCSSC-CCC
T ss_pred CCCccceeCHHHcccCCceEEEeeCCC-ccC
Confidence 999999999876555559999999998 443
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=2.6e-10 Score=98.70 Aligned_cols=103 Identities=14% Similarity=0.122 Sum_probs=86.9
Q ss_pred EEEeecC-CCcccCccccCCCccEEeccc-CccccccCchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEEccC
Q 037969 156 AISLLNS-SIHEVSEEFECLQLEFLHISQ-NTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQ 232 (300)
Q Consensus 156 ~L~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~ 232 (300)
.++..++ .+..+|....+++|+.|++++ |.+ ..+|+..|.++.+|++|+|++|.++.+ |..++.+++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l--~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHL--QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSC--CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCC--CCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677777 788899933889999999996 999 888877779999999999999999996 45689999999999999
Q ss_pred CCCCC-cccccCCCCcCEEEccCCCCCCC
Q 037969 233 SMLGD-IAIIGKLKNLEILSFLNSDIVRL 260 (300)
Q Consensus 233 ~~l~~-p~~~~~l~~L~~L~l~~~~l~~l 260 (300)
|.+.. |+.+.....|+.|++.+|.+...
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCC
Confidence 99998 65544443499999999988743
No 140
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=1.2e-09 Score=93.87 Aligned_cols=98 Identities=14% Similarity=0.212 Sum_probs=83.8
Q ss_pred CCcccEEEeeCCcCCcCCc-ccccCCCCcEEEccCCCCCC--cccccCCCCcC-EEEccCCCCCCCc-hhhcCCCCCCEE
Q 037969 199 MKTLRVIDLTRMRLFSLPS-SIGLLANLQTLCLDQSMLGD--IAIIGKLKNLE-ILSFLNSDIVRLP-GELGQLTKLRLL 273 (300)
Q Consensus 199 l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~-~L~l~~~~l~~lp-~~~~~l~~L~~L 273 (300)
+.+|+.+++++|.++.+|+ .+..+.+|+.+++..+ +.. ...+..+++|+ .+.+.. +++.++ ..+.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 6789999999999998865 4888999999999887 665 47788999999 999988 777776 458899999999
Q ss_pred eccCCCCccccchhhhcCCCCCCeee
Q 037969 274 DLTDCLQLKFIVPNVLSSFTRLEELY 299 (300)
Q Consensus 274 ~l~~~~~l~~lp~~~l~~L~~L~~L~ 299 (300)
++.++. +..++...+.++++|+.++
T Consensus 303 ~l~~n~-i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDK-ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred EeCCCc-cCccchhhhcCCcchhhhc
Confidence 998888 8899988899999999886
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.99 E-value=5.2e-10 Score=103.64 Aligned_cols=148 Identities=19% Similarity=0.174 Sum_probs=91.1
Q ss_pred ccCCccEEEeecCCCcc-----cCccc-cCCCccEEecccCccccccCc----hhHHhcCCcccEEEeeCCcCCcCCccc
Q 037969 150 ALKKCSAISLLNSSIHE-----VSEEF-ECLQLEFLHISQNTFVEVNIP----DNIFKGMKTLRVIDLTRMRLFSLPSSI 219 (300)
Q Consensus 150 ~~~~l~~L~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~l~----~~~~~~l~~L~~L~l~~~~~~~lp~~i 219 (300)
.+++++.|++.+|.+.. ++... .+++|+.|++.+|.+ ..+. ..++.++++|++|+++++.+..+|..+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~--~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~ 239 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF--AKISPKDLETIARNCRSLVSVKVGDFEILELVGFF 239 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCC--SSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCC--CccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHH
Confidence 45677778777776522 22222 677778887777766 3111 123356778888888887777777777
Q ss_pred ccCCCCcEEEccCCCCC----C-cccccCCCCcCEEEccCCCCCCCchhhcCCCCCCEEeccCCCCccccchhhhcCCCC
Q 037969 220 GLLANLQTLCLDQSMLG----D-IAIIGKLKNLEILSFLNSDIVRLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTR 294 (300)
Q Consensus 220 ~~l~~L~~L~l~~~~l~----~-p~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~ 294 (300)
+.+++|++|+++..... . +..+..+++|+.|+++++....+|..+..+++|++|++++|......+...++.+++
T Consensus 240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 77777777777643211 1 345566666777766665555666666667777777777776222222223566666
Q ss_pred CCeee
Q 037969 295 LEELY 299 (300)
Q Consensus 295 L~~L~ 299 (300)
|++|+
T Consensus 320 L~~L~ 324 (592)
T 3ogk_B 320 LEVLE 324 (592)
T ss_dssp CCEEE
T ss_pred CCEEe
Confidence 66664
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.98 E-value=1.2e-09 Score=93.91 Aligned_cols=75 Identities=13% Similarity=0.145 Sum_probs=50.7
Q ss_pred CCCCcEEEccCCCCCC-c-ccccCCCCcCEEEccCCCCCCCchh-hcCCCCCC-EEeccCCCCccccchhhhcCCCCCCe
Q 037969 222 LANLQTLCLDQSMLGD-I-AIIGKLKNLEILSFLNSDIVRLPGE-LGQLTKLR-LLDLTDCLQLKFIVPNVLSSFTRLEE 297 (300)
Q Consensus 222 l~~L~~L~l~~~~l~~-p-~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~-~L~l~~~~~l~~lp~~~l~~L~~L~~ 297 (300)
+.+|+.+++++|.+.. + ..+..+++|+.+++.++ ++.++.. +.++.+|+ .+.+.+ . +..++...+..+++|+.
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~-l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S-VTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T-CCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-c-ceEEchhhhhCCccCCE
Confidence 4567777777776666 3 55667777777777765 6666553 66677777 777766 3 66676666777777776
Q ss_pred ee
Q 037969 298 LY 299 (300)
Q Consensus 298 L~ 299 (300)
++
T Consensus 302 l~ 303 (329)
T 3sb4_A 302 VL 303 (329)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.91 E-value=3.2e-10 Score=99.11 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=84.8
Q ss_pred CCccEEEeecCCCcc--cCccc-cCCCccEEecccCccccccCchhHH-----hcCCcccEEEeeCCcCCc-----CCcc
Q 037969 152 KKCSAISLLNSSIHE--VSEEF-ECLQLEFLHISQNTFVEVNIPDNIF-----KGMKTLRVIDLTRMRLFS-----LPSS 218 (300)
Q Consensus 152 ~~l~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~-----~~l~~L~~L~l~~~~~~~-----lp~~ 218 (300)
.+++.|++++|.+.. +.... .+++|+.|++++|.+ +......+ ...+.|++|+|++|.++. ++..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l--~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSL--GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCC--CHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCC--CHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence 567788888887632 22222 456788888888776 33221111 234678888888887764 4455
Q ss_pred cccCCCCcEEEccCCCCCC------cccccCCCCcCEEEccCCCCC-----CCchhhcCCCCCCEEeccCCCCccc
Q 037969 219 IGLLANLQTLCLDQSMLGD------IAIIGKLKNLEILSFLNSDIV-----RLPGELGQLTKLRLLDLTDCLQLKF 283 (300)
Q Consensus 219 i~~l~~L~~L~l~~~~l~~------p~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~l~~ 283 (300)
+...++|++|++++|.+.. +..+...++|++|++++|.++ .++..+...++|++|++++|. ++.
T Consensus 179 L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~ 253 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE-LSS 253 (372)
T ss_dssp HHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCH
T ss_pred HhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCH
Confidence 5667778888888887764 244566778888888888776 244455567788888888887 443
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.83 E-value=6.6e-10 Score=97.06 Aligned_cols=105 Identities=14% Similarity=0.090 Sum_probs=50.2
Q ss_pred CCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcC-Cccc-----ccCCCCcEEEccCCCCCC------cccc
Q 037969 174 LQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSL-PSSI-----GLLANLQTLCLDQSMLGD------IAII 241 (300)
Q Consensus 174 ~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i-----~~l~~L~~L~l~~~~l~~------p~~~ 241 (300)
++|+.|++++|.+- ......+...+++|+.|+|++|.++.. ...+ ...++|++|++++|.+.. +..+
T Consensus 101 ~~L~~L~Ls~n~l~-~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQLD-PAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCCCC-HHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCC-HHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 45666666655541 111112223344556666666655431 1111 123456666666665543 1223
Q ss_pred cCCCCcCEEEccCCCCC-----CCchhhcCCCCCCEEeccCCC
Q 037969 242 GKLKNLEILSFLNSDIV-----RLPGELGQLTKLRLLDLTDCL 279 (300)
Q Consensus 242 ~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~ 279 (300)
...++|++|++++|.++ .++..+...++|++|++++|.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 45555666666665554 123344455556666666655
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.81 E-value=5.4e-09 Score=96.77 Aligned_cols=124 Identities=17% Similarity=0.173 Sum_probs=72.9
Q ss_pred cccCCccEEEeecCCCcc-----cCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcC----------
Q 037969 149 DALKKCSAISLLNSSIHE-----VSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRL---------- 212 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~---------- 212 (300)
...++++.|+++.+.+.. ++... .+++|++|++.+|.+ ..+|.. +..+++|+.|+++....
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~--~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI--LELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG--GGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH--HHHHHH-HhhhhHHHhhcccccccccchHHHHHH
Confidence 346789999999888752 33333 789999999999887 667654 47788888888874321
Q ss_pred -----------------CcCCcccccCCCCcEEEccCCCCCC--c-ccccCCCCcCEEEccCCCCC--CCchhhcCCCCC
Q 037969 213 -----------------FSLPSSIGLLANLQTLCLDQSMLGD--I-AIIGKLKNLEILSFLNSDIV--RLPGELGQLTKL 270 (300)
Q Consensus 213 -----------------~~lp~~i~~l~~L~~L~l~~~~l~~--p-~~~~~l~~L~~L~l~~~~l~--~lp~~~~~l~~L 270 (300)
..+|..+..+++|++|++++|.+.. + ..+..+++|++|+++++ +. .++.....+++|
T Consensus 266 l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L 344 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVLAQYCKQL 344 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTC
T ss_pred hhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHHHHhCCCC
Confidence 1233334444555555555555433 1 22445555555555522 11 233233445566
Q ss_pred CEEecc
Q 037969 271 RLLDLT 276 (300)
Q Consensus 271 ~~L~l~ 276 (300)
++|+++
T Consensus 345 ~~L~L~ 350 (592)
T 3ogk_B 345 KRLRIE 350 (592)
T ss_dssp CEEEEE
T ss_pred CEEEee
Confidence 666666
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.78 E-value=5.5e-09 Score=96.73 Aligned_cols=148 Identities=16% Similarity=0.115 Sum_probs=90.4
Q ss_pred ccCCccEEEeecCCCc-ccCc-cc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-----CCccccc
Q 037969 150 ALKKCSAISLLNSSIH-EVSE-EF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-----LPSSIGL 221 (300)
Q Consensus 150 ~~~~l~~L~l~~~~~~-~~~~-~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~ 221 (300)
..++++.|+++++.+. ..+. .. .+++|+.|++.+|..........+..++++|++|++++|.++. ++.....
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 4567778888777662 2222 22 5778888888777332222122334567788888888777554 2222235
Q ss_pred CCCCcEEEccCCC--CCC--c-ccccCCCCcCEEEccCC-CCCCCchhhcCCCCCCEEeccCCCC------ccccchhhh
Q 037969 222 LANLQTLCLDQSM--LGD--I-AIIGKLKNLEILSFLNS-DIVRLPGELGQLTKLRLLDLTDCLQ------LKFIVPNVL 289 (300)
Q Consensus 222 l~~L~~L~l~~~~--l~~--p-~~~~~l~~L~~L~l~~~-~l~~lp~~~~~l~~L~~L~l~~~~~------l~~lp~~~l 289 (300)
+++|++|++++|. +.. . .-+..+++|++|++++| .+..+|..+.++++|++|+++.+.. +..++.. +
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~-l 261 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA-L 261 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH-H
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH-H
Confidence 5678888887775 221 1 22345678888888877 5556777777788888887665531 2344444 6
Q ss_pred cCCCCCCee
Q 037969 290 SSFTRLEEL 298 (300)
Q Consensus 290 ~~L~~L~~L 298 (300)
+++++|+.|
T Consensus 262 ~~~~~L~~L 270 (594)
T 2p1m_B 262 SGCKELRCL 270 (594)
T ss_dssp HTCTTCCEE
T ss_pred hcCCCcccc
Confidence 777777766
No 147
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.67 E-value=4.2e-09 Score=97.49 Aligned_cols=56 Identities=23% Similarity=0.151 Sum_probs=27.3
Q ss_pred CCCCcCEEEccCCCCC--CCchhhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969 243 KLKNLEILSFLNSDIV--RLPGELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299 (300)
Q Consensus 243 ~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 299 (300)
.+++|++|++++|.++ .++..+.++++|++|++++|..-..++ .+...+++|++|+
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~-~l~~~~~~L~~L~ 344 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLE-VLASTCKDLRELR 344 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHH-HHHHHCTTCCEEE
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHH-HHHHhCCCCCEEE
Confidence 4456666666666544 122224456666666666652111122 1133456666654
No 148
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.64 E-value=2.8e-08 Score=92.19 Aligned_cols=105 Identities=15% Similarity=0.211 Sum_probs=78.8
Q ss_pred hHHHHHHHHhcCCCCCCCC----CCCcccccceeeccccCCchhHHHHHHHhhhcCCCCCHH--HHHhhhhhcccccCch
Q 037969 10 HEWKNALRELQTPSVVNFE----GVPAETYSSIELSFKYLKGEQLKKIFLLCSLIGNSFWFT--DLFKYSMGLGIFQGVN 83 (300)
Q Consensus 10 ~~W~~~l~~l~~~~~~~~~----~~~~~i~~~l~lsy~~L~~~~lk~cfl~~a~fp~~~~~~--~Li~~w~aeg~i~~~~ 83 (300)
.+|+.+++.+......... .....+..++..||+.||++ .|.||++||+||+++.++ .+...|.+++
T Consensus 336 ~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~------ 408 (591)
T 1z6t_A 336 NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET------ 408 (591)
T ss_dssp TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH------
T ss_pred hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH------
Confidence 4699999988764322111 11235888999999999999 999999999999999988 6777886531
Q ss_pred hHHHHHHHHHHHHHHHHHhcccccC--CCCCcEEechhHHHHHHHH
Q 037969 84 RMVDARNKLYALVHELRDSCLLLEG--DSSEQFSMHDVVYDVVVSI 127 (300)
Q Consensus 84 ~~e~~~~~~~~~~~~L~~~~~~~~~--~~~~~~~~hdl~~~~~~~~ 127 (300)
++ ..+++++|++++++... +...+|+||+++++++...
T Consensus 409 --~~----~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 409 --EE----VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp --HH----HHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred --HH----HHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 22 34567888889999743 2334799999999999876
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.43 E-value=3.4e-07 Score=79.38 Aligned_cols=58 Identities=14% Similarity=0.272 Sum_probs=28.3
Q ss_pred CCCCcEEEccCCCCCC--cccc---cCCCCcCEEEccCCCCCC-----CchhhcCCCCCCEEeccCCC
Q 037969 222 LANLQTLCLDQSMLGD--IAII---GKLKNLEILSFLNSDIVR-----LPGELGQLTKLRLLDLTDCL 279 (300)
Q Consensus 222 l~~L~~L~l~~~~l~~--p~~~---~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~ 279 (300)
+++|++|++++|.+.. +..+ ..+++|++|+++.|.+.. ++..+.++++|+.|++++|.
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 4555555555555432 1111 234555555555555542 33333445555555555554
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.38 E-value=1.8e-06 Score=76.04 Aligned_cols=140 Identities=11% Similarity=0.139 Sum_probs=58.6
Q ss_pred cCCccEEEeecCCCcccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcc-cccCCCCcEE
Q 037969 151 LKKCSAISLLNSSIHEVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS-IGLLANLQTL 228 (300)
Q Consensus 151 ~~~l~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L 228 (300)
+.+|+.+.+..+.+..++... .+.+|+.+.+..+ + ..++...|.++.+|+.+.+..+ ++.++.. +.+ .+|+.+
T Consensus 179 c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l--~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i 253 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-L--KEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTV 253 (401)
T ss_dssp CTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-C--CEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred cccCCeeecCCCcceEechhhEeecccCEEEeCCc-h--heehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEE
Confidence 344555555554444444332 3344444444422 2 3444444555555555555432 2322211 212 334444
Q ss_pred EccCCCCCC--cccccCCCCcCEEEccCCCCC-----CCch-hhcCCCCCCEEeccCCCCccccchhhhcCCCCCCee
Q 037969 229 CLDQSMLGD--IAIIGKLKNLEILSFLNSDIV-----RLPG-ELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL 298 (300)
Q Consensus 229 ~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~-----~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L 298 (300)
.+.. .+.. ...+..+++|+.+.+.++.+. .++. .+..+++|+.+.+.+ . +..++...+.++++|+.+
T Consensus 254 ~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~-i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 254 KLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-S-IRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp EEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-T-CCEECTTTTTTCCSCCEE
T ss_pred EeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-c-eEEEhhhhhcCCCCccEE
Confidence 4321 1222 233444555555555444332 2222 244444455554442 1 344444444444444444
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.35 E-value=5.5e-07 Score=78.10 Aligned_cols=145 Identities=16% Similarity=0.212 Sum_probs=95.9
Q ss_pred cccCCccEEEeecCCCc----------ccCccc-cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCc-CC
Q 037969 149 DALKKCSAISLLNSSIH----------EVSEEF-ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFS-LP 216 (300)
Q Consensus 149 ~~~~~l~~L~l~~~~~~----------~~~~~~-~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~-lp 216 (300)
..+++++.|.+...... .+.... .+|+|+.|.+.++.. ..++. + .+++|+.|++..+.+.. ..
T Consensus 136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~--l~l~~-~--~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN--LSIGK-K--PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT--CBCCS-C--BCTTCSEEEEECSBCCHHHH
T ss_pred hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC--ceecc-c--cCCCCcEEEEecCCCChHHH
Confidence 45678999988654321 122333 679999999988743 34554 2 37899999999887754 12
Q ss_pred cccc--cCCCCcEEEccCC--CC-CC--c----ccc--cCCCCcCEEEccCCCCCC-Cchhh---cCCCCCCEEeccCCC
Q 037969 217 SSIG--LLANLQTLCLDQS--ML-GD--I----AII--GKLKNLEILSFLNSDIVR-LPGEL---GQLTKLRLLDLTDCL 279 (300)
Q Consensus 217 ~~i~--~l~~L~~L~l~~~--~l-~~--p----~~~--~~l~~L~~L~l~~~~l~~-lp~~~---~~l~~L~~L~l~~~~ 279 (300)
..+. .+++|++|+|+.+ .. .. . +.+ ..+++|++|++++|.+.. .+..+ ..+++|++|+++.|.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~ 290 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV 290 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC
Confidence 2333 6899999998532 11 11 1 122 357899999999998762 22223 357899999999887
Q ss_pred Cccc-----cchhhhcCCCCCCeeeC
Q 037969 280 QLKF-----IVPNVLSSFTRLEELYM 300 (300)
Q Consensus 280 ~l~~-----lp~~~l~~L~~L~~L~l 300 (300)
++. ++.. +..+++|+.|++
T Consensus 291 -L~d~G~~~L~~~-L~~l~~L~~L~L 314 (362)
T 2ra8_A 291 -LTDEGARLLLDH-VDKIKHLKFINM 314 (362)
T ss_dssp -CBHHHHHHHHTT-HHHHTTCSEEEC
T ss_pred -CChHHHHHHHhh-cccCCcceEEEC
Confidence 544 3433 456788988875
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.31 E-value=6.4e-07 Score=68.96 Aligned_cols=83 Identities=18% Similarity=0.267 Sum_probs=57.4
Q ss_pred CcccEEEeeCCcCCcC-CcccccCCCCcEEEccCCC-CCC--cccccCC----CCcCEEEccCC-CCC--CCchhhcCCC
Q 037969 200 KTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQSM-LGD--IAIIGKL----KNLEILSFLNS-DIV--RLPGELGQLT 268 (300)
Q Consensus 200 ~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~-l~~--p~~~~~l----~~L~~L~l~~~-~l~--~lp~~~~~l~ 268 (300)
..|+.|+++++.++.. -..+..+++|++|+|++|. +++ ...+..+ ++|++|++++| +++ .+ ..+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence 3577777777776652 2446677888888888875 554 5666664 36888888888 576 23 3466788
Q ss_pred CCCEEeccCCCCccc
Q 037969 269 KLRLLDLTDCLQLKF 283 (300)
Q Consensus 269 ~L~~L~l~~~~~l~~ 283 (300)
+|++|++++|..++.
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 888888888875554
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=9.9e-07 Score=72.89 Aligned_cols=78 Identities=26% Similarity=0.311 Sum_probs=56.3
Q ss_pred hcCCcccEEEeeCCcCCcC---CcccccCCCCcEEEccCCCCCCcccccCCC--CcCEEEccCCCCC-CCch-------h
Q 037969 197 KGMKTLRVIDLTRMRLFSL---PSSIGLLANLQTLCLDQSMLGDIAIIGKLK--NLEILSFLNSDIV-RLPG-------E 263 (300)
Q Consensus 197 ~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~l~~~~l~~p~~~~~l~--~L~~L~l~~~~l~-~lp~-------~ 263 (300)
.++++|++|+|++|.++.+ |..++.+++|++|+|++|.+.....+..+. +|++|++++|.+. .+|. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 4677888888888888764 355667888888888888887754444444 7888888888776 3442 2
Q ss_pred hcCCCCCCEEe
Q 037969 264 LGQLTKLRLLD 274 (300)
Q Consensus 264 ~~~l~~L~~L~ 274 (300)
+..+++|+.|+
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56778888776
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.26 E-value=9.4e-07 Score=69.16 Aligned_cols=107 Identities=11% Similarity=0.114 Sum_probs=73.0
Q ss_pred cCCCccEEecccC-cccc---ccCchhHHhcCCcccEEEeeCCcCCc-----CCcccccCCCCcEEEccCCCCCC-----
Q 037969 172 ECLQLEFLHISQN-TFVE---VNIPDNIFKGMKTLRVIDLTRMRLFS-----LPSSIGLLANLQTLCLDQSMLGD----- 237 (300)
Q Consensus 172 ~~~~L~~L~l~~~-~~~~---~~l~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~l~~----- 237 (300)
..+.|+.|++.+| .+-. ..+... +...++|++|+|++|.+.. +...+...++|++|+|++|.+..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~-L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEA-LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHH-HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHH-HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 4566777777776 5510 012222 2456778888888888764 34455666788888888888775
Q ss_pred -cccccCCCCcCEEEc--cCCCCCC-----CchhhcCCCCCCEEeccCCC
Q 037969 238 -IAIIGKLKNLEILSF--LNSDIVR-----LPGELGQLTKLRLLDLTDCL 279 (300)
Q Consensus 238 -p~~~~~l~~L~~L~l--~~~~l~~-----lp~~~~~l~~L~~L~l~~~~ 279 (300)
...+...++|++|++ ++|.+.. +...+...+.|++|++++|.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 255667778899999 7787762 44556667889999998887
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.20 E-value=2.7e-06 Score=70.30 Aligned_cols=79 Identities=24% Similarity=0.273 Sum_probs=64.1
Q ss_pred ccCCCCcEEEccCCCCCCc----ccccCCCCcCEEEccCCCCCCCchhhcCCC--CCCEEeccCCCCccccc------hh
Q 037969 220 GLLANLQTLCLDQSMLGDI----AIIGKLKNLEILSFLNSDIVRLPGELGQLT--KLRLLDLTDCLQLKFIV------PN 287 (300)
Q Consensus 220 ~~l~~L~~L~l~~~~l~~p----~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~--~L~~L~l~~~~~l~~lp------~~ 287 (300)
.++++|+.|+|++|.+... ..+..+++|+.|+|++|.++.+ ..+..+. +|+.|++++|+..+.+| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 5688999999999999872 4456899999999999999977 3455555 99999999999655555 23
Q ss_pred hhcCCCCCCeee
Q 037969 288 VLSSFTRLEELY 299 (300)
Q Consensus 288 ~l~~L~~L~~L~ 299 (300)
++..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 478899999886
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.19 E-value=1.5e-06 Score=67.94 Aligned_cols=103 Identities=16% Similarity=0.102 Sum_probs=81.0
Q ss_pred HhcCCcccEEEeeCC-cCCc-----CCcccccCCCCcEEEccCCCCCC--c----ccccCCCCcCEEEccCCCCCC----
Q 037969 196 FKGMKTLRVIDLTRM-RLFS-----LPSSIGLLANLQTLCLDQSMLGD--I----AIIGKLKNLEILSFLNSDIVR---- 259 (300)
Q Consensus 196 ~~~l~~L~~L~l~~~-~~~~-----lp~~i~~l~~L~~L~l~~~~l~~--p----~~~~~l~~L~~L~l~~~~l~~---- 259 (300)
+...+.|++|+|++| .+.. +...+...++|++|+|++|.+.. . ..+...++|++|++++|.+..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 467889999999999 8864 45566777899999999999875 2 445566899999999999883
Q ss_pred -CchhhcCCCCCCEEec--cCCCCccc-----cchhhhcCCCCCCeeeC
Q 037969 260 -LPGELGQLTKLRLLDL--TDCLQLKF-----IVPNVLSSFTRLEELYM 300 (300)
Q Consensus 260 -lp~~~~~l~~L~~L~l--~~~~~l~~-----lp~~~l~~L~~L~~L~l 300 (300)
+...+...+.|++|++ ++|. ++. +.. .+...++|++|+|
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~-~L~~n~~L~~L~L 158 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIAN-MLEKNTTLLKFGY 158 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHH-HHHHCSSCCEEEC
T ss_pred HHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHH-HHHhCCCcCEEec
Confidence 5667888899999999 7787 443 333 2666788998875
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.18 E-value=1.4e-06 Score=67.12 Aligned_cols=78 Identities=17% Similarity=0.204 Sum_probs=61.4
Q ss_pred CCCcEEEccCCCCCC--cccccCCCCcCEEEccCC-CCCC-CchhhcCC----CCCCEEeccCCCCccccchhhhcCCCC
Q 037969 223 ANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNS-DIVR-LPGELGQL----TKLRLLDLTDCLQLKFIVPNVLSSFTR 294 (300)
Q Consensus 223 ~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~-~l~~-lp~~~~~l----~~L~~L~l~~~~~l~~lp~~~l~~L~~ 294 (300)
..|+.||+++|.+.. ...+..+++|++|++++| .++. --..++.+ ++|++|++++|..++.---..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 479999999999876 688899999999999999 6772 11345554 379999999998776543333778999
Q ss_pred CCeeeC
Q 037969 295 LEELYM 300 (300)
Q Consensus 295 L~~L~l 300 (300)
|++|++
T Consensus 141 L~~L~L 146 (176)
T 3e4g_A 141 LKYLFL 146 (176)
T ss_dssp CCEEEE
T ss_pred CCEEEC
Confidence 999874
No 158
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.16 E-value=9.4e-06 Score=71.41 Aligned_cols=120 Identities=13% Similarity=0.230 Sum_probs=64.5
Q ss_pred CccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCcc-----------------------cccCCCCcEEEcc
Q 037969 175 QLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPSS-----------------------IGLLANLQTLCLD 231 (300)
Q Consensus 175 ~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-----------------------i~~l~~L~~L~l~ 231 (300)
+|+.+.+.. .+ ..+++..|.++.+|+.+++..+.++.+|.. +..+.+|+.+.+.
T Consensus 158 ~L~~i~lp~-~l--~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TL--EQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TC--CEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-Cc--cEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecC
Confidence 455555543 23 344444445555555555555544444333 3444455555554
Q ss_pred CCCCCC--cccccCCCCcCEEEccCCCCCCCch-hhcCCCCCCEEeccCCCC----ccccchhhhcCCCCCCeeeC
Q 037969 232 QSMLGD--IAIIGKLKNLEILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCLQ----LKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 232 ~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~----l~~lp~~~l~~L~~L~~L~l 300 (300)
.+ +.. ...+.. .+|+.+.+ .++++.++. .+.++++|+.+.+.++.. ...++...+..+++|+.+.+
T Consensus 235 ~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI 307 (401)
T ss_dssp TT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC
T ss_pred CC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe
Confidence 32 222 122333 45555555 234455533 467788888888877652 12577767888888887764
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.79 E-value=0.012 Score=50.85 Aligned_cols=83 Identities=11% Similarity=0.195 Sum_probs=35.4
Q ss_pred CchhHHhcCCcccEEEeeCCcCCcCC-cccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCch-hhcC
Q 037969 191 IPDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPG-ELGQ 266 (300)
Q Consensus 191 l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~-~~~~ 266 (300)
+....|.++..|+.+.+.. .++.++ ..+..+.+|+.+.+.++.+.. ...+..+.+|+.+.+.. +++.++. .+.+
T Consensus 254 I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~-~l~~I~~~aF~~ 331 (379)
T 4h09_A 254 IGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT-ALKTIQVYAFKN 331 (379)
T ss_dssp ECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTT
T ss_pred eCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc-cccEEHHHHhhC
Confidence 3333344444444444432 233332 223444455555554444443 23444455555555532 2333332 2444
Q ss_pred CCCCCEEec
Q 037969 267 LTKLRLLDL 275 (300)
Q Consensus 267 l~~L~~L~l 275 (300)
+++|+.+.+
T Consensus 332 C~~L~~i~i 340 (379)
T 4h09_A 332 CKALSTISY 340 (379)
T ss_dssp CTTCCCCCC
T ss_pred CCCCCEEEE
Confidence 445554444
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.46 E-value=0.019 Score=50.01 Aligned_cols=56 Identities=13% Similarity=0.132 Sum_probs=24.7
Q ss_pred cccCCCCcCEEEccCCCCCCCch-hhcCCCCCCEEeccCCCCccccchhhhcCCCCCCee
Q 037969 240 IIGKLKNLEILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEEL 298 (300)
Q Consensus 240 ~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L 298 (300)
.+..+.+|+.+.+.. .++.++. .+.++++|+.+.+..+ +..++...+.++++|+.+
T Consensus 315 aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i 371 (394)
T 4fs7_A 315 AFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKV 371 (394)
T ss_dssp TTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEE
T ss_pred hhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEE
Confidence 344444555555432 2333322 2444455555555332 344444444445555444
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.25 E-value=0.031 Score=48.26 Aligned_cols=122 Identities=21% Similarity=0.204 Sum_probs=81.0
Q ss_pred cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCC-cccccCCCCcEEEccCCCCCC--cccccCCCCcC
Q 037969 172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLP-SSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLE 248 (300)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~ 248 (300)
.+.+++.+.+..+. ..+....|.++..|+.+.+..+ ++.++ ..+....+|+.+.+..+ +.. ...+..+.+|+
T Consensus 215 ~~~~l~~i~~~~~~---~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 215 YGKNLKKITITSGV---TTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TCSSCSEEECCTTC---CEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccceeeeccce---eEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 56677777766442 3455555667778888887664 55553 34566777888877543 333 35567778888
Q ss_pred EEEccCCCCCCCch-hhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 249 ILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 249 ~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
.+.+.++.++.++. .+.++.+|+.+.+..+ ++.++...+.++++|+.+.+
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence 88887777777754 3677788888888543 56676666777777776643
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.15 E-value=0.01 Score=43.05 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=34.8
Q ss_pred EEecccCccccc--cCchhHHhcCCcccEEEeeCCcCCcCCcc-cccCCCCcEEEccCCCCC
Q 037969 178 FLHISQNTFVEV--NIPDNIFKGMKTLRVIDLTRMRLFSLPSS-IGLLANLQTLCLDQSMLG 236 (300)
Q Consensus 178 ~L~l~~~~~~~~--~l~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~l~ 236 (300)
.++-+++.+ . .+|..+ ..+|++|+|++|.++.+|.. +..+.+|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L--~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGL--TWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCC--CTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCC--ccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 455555555 4 666533 34577777777777777543 566777777777777654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.06 E-value=0.013 Score=42.54 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=44.0
Q ss_pred EEEeecCCCc--ccCccccCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCC
Q 037969 156 AISLLNSSIH--EVSEEFECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLF 213 (300)
Q Consensus 156 ~L~l~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~ 213 (300)
.++.+++.+. .+|..+ -++++.|++++|.+ ..+|...|..+++|++|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l-p~~l~~L~Ls~N~l--~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF-PVDTTELVLTGNNL--TALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC-CTTCSEEECTTSCC--SSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC-CcCCCEEECCCCcC--CccChhhhhhccccCEEEecCCCee
Confidence 5667777776 777532 23689999999999 8899888899999999999998765
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.02 E-value=0.016 Score=50.49 Aligned_cols=54 Identities=28% Similarity=0.433 Sum_probs=30.2
Q ss_pred cCCccEEEeecCCCcccCccc--cCCCccEEecccCccccccCchhHHhcCCcccEEEee
Q 037969 151 LKKCSAISLLNSSIHEVSEEF--ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLT 208 (300)
Q Consensus 151 ~~~l~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~ 208 (300)
..+|+.+.+. +.+..++... +|++|+.+.+..+ + ..+++..|.++..|+.+.+.
T Consensus 70 c~~L~~i~lp-~~i~~I~~~aF~~c~~L~~i~lp~~-l--~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 70 CRKVTEIKIP-STVREIGEFAFENCSKLEIINIPDS-V--KMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp CTTEEEEECC-TTCCEECTTTTTTCTTCCEECCCTT-C--CEECTTTTTTCTTCCCCCCC
T ss_pred CCCceEEEeC-CCccCcchhHhhCCCCCcEEEeCCC-c--eEccchhhcccccchhhccc
Confidence 4456666664 3344554432 6677777777644 3 45555555666666655443
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.96 E-value=0.025 Score=49.24 Aligned_cols=118 Identities=16% Similarity=0.286 Sum_probs=75.6
Q ss_pred cCCCccEEecccCccccccCchhHHhcCCcccEEEeeCCcCCcCCc-ccccCCCCcEEEccCCCCCC--cccccCCCCcC
Q 037969 172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTRMRLFSLPS-SIGLLANLQTLCLDQSMLGD--IAIIGKLKNLE 248 (300)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~ 248 (300)
.+.+|+.+.+..+. ..+....|.++..|+.+.+. +.++.+++ .+..+.+|+.+.+..+ ++. ...+..+.+|+
T Consensus 263 ~c~~L~~i~lp~~~---~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 263 SCAYLASVKMPDSV---VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE 337 (394)
T ss_dssp TCSSCCEEECCTTC---CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred ecccccEEeccccc---ceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence 56777777776543 34556666778888888885 34666643 4667788888888654 444 36677888888
Q ss_pred EEEccCCCCCCCch-hhcCCCCCCEEeccCCCCccccchhhhcCCCCCCeee
Q 037969 249 ILSFLNSDIVRLPG-ELGQLTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELY 299 (300)
Q Consensus 249 ~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~ 299 (300)
.+.+.. +++.++. .+.++++|+.+++.++.. .. . .+....+|+.+.
T Consensus 338 ~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~--~~-~-~~~~~~~L~~i~ 384 (394)
T 4gt6_A 338 RIAIPS-SVTKIPESAFSNCTALNNIEYSGSRS--QW-N-AISTDSGLQNLP 384 (394)
T ss_dssp EEEECT-TCCBCCGGGGTTCTTCCEEEESSCHH--HH-H-TCBCCCCC----
T ss_pred EEEECc-ccCEEhHhHhhCCCCCCEEEECCcee--eh-h-hhhccCCCCEEE
Confidence 888854 4666654 477888888888877641 11 1 244555665543
No 166
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.42 E-value=0.049 Score=47.35 Aligned_cols=105 Identities=12% Similarity=0.192 Sum_probs=77.1
Q ss_pred CchhHHhcCCcccEEEeeCCcCCcC-CcccccCCCCcEEEccCCCCCC--cccccCCCCcCEEEccCCCCCCCch-hhcC
Q 037969 191 IPDNIFKGMKTLRVIDLTRMRLFSL-PSSIGLLANLQTLCLDQSMLGD--IAIIGKLKNLEILSFLNSDIVRLPG-ELGQ 266 (300)
Q Consensus 191 l~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~l~~--p~~~~~l~~L~~L~l~~~~l~~lp~-~~~~ 266 (300)
+....|.++..|+.+.+..+. ..+ ...+.+...|+.+.+.. .+.. ...+..+.+|+.+.+.. +++.+.. .+.+
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~ 332 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPE-GITQILDDAFAG 332 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTT
T ss_pred cccceeeecccccEEeccccc-ceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCC-cccEehHhHhhC
Confidence 444556778888888886543 333 34567788899998863 3444 36678889999999975 4666654 4788
Q ss_pred CCCCCEEeccCCCCccccchhhhcCCCCCCeeeC
Q 037969 267 LTKLRLLDLTDCLQLKFIVPNVLSSFTRLEELYM 300 (300)
Q Consensus 267 l~~L~~L~l~~~~~l~~lp~~~l~~L~~L~~L~l 300 (300)
+.+|+.+.+..+ +..++...+.++++|+.+++
T Consensus 333 C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 333 CEQLERIAIPSS--VTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp CTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEE
T ss_pred CCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEE
Confidence 999999999654 67888877999999998753
No 167
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.23 E-value=0.024 Score=44.22 Aligned_cols=105 Identities=10% Similarity=0.050 Sum_probs=69.9
Q ss_pred cCCCccEEecccC-cccccc-----CchhHHhcCCcccEEEeeCCcCCc-----CCcccccCCCCcEEEccCCCCCC--c
Q 037969 172 ECLQLEFLHISQN-TFVEVN-----IPDNIFKGMKTLRVIDLTRMRLFS-----LPSSIGLLANLQTLCLDQSMLGD--I 238 (300)
Q Consensus 172 ~~~~L~~L~l~~~-~~~~~~-----l~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~~L~~L~l~~~~l~~--p 238 (300)
.-+.|+.|++.++ .+ +. +-+. +..-..|+.|+|++|.+.. +.+.+..-+.|+.|+|++|.+.. .
T Consensus 39 ~n~~L~~L~L~~nn~i--gd~ga~~la~a-L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRV--SKERIRSLIEA-ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp TCSSCCEEECTTCCSS--CHHHHHHHHHH-HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred cCCCccEEECCCCCCC--CHHHHHHHHHH-HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 4467889999875 55 21 1222 2455789999999998873 34455556789999999998875 1
Q ss_pred ----ccccCCCCcCEEEccCCCC---C-----CCchhhcCCCCCCEEeccCCC
Q 037969 239 ----AIIGKLKNLEILSFLNSDI---V-----RLPGELGQLTKLRLLDLTDCL 279 (300)
Q Consensus 239 ----~~~~~l~~L~~L~l~~~~l---~-----~lp~~~~~l~~L~~L~l~~~~ 279 (300)
+.+..-+.|++|+++++.. . .+-..+..=+.|+.|+++.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 4555666799999986532 2 133334555788888887654
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.82 E-value=0.033 Score=43.40 Aligned_cols=102 Identities=14% Similarity=0.175 Sum_probs=55.5
Q ss_pred CCccEEEeecC-CCcc-----cCccc-cCCCccEEecccCcccccc-----CchhHHhcCCcccEEEeeCCcCCc-----
Q 037969 152 KKCSAISLLNS-SIHE-----VSEEF-ECLQLEFLHISQNTFVEVN-----IPDNIFKGMKTLRVIDLTRMRLFS----- 214 (300)
Q Consensus 152 ~~l~~L~l~~~-~~~~-----~~~~~-~~~~L~~L~l~~~~~~~~~-----l~~~~~~~l~~L~~L~l~~~~~~~----- 214 (300)
+.++.|++.++ .+.. +.... .-+.|+.|++.+|.+ +. +-+. +..-+.|+.|+|++|.|..
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~i--gd~ga~alA~a-L~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAI--SDSEARGLIEL-IETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCC--BHHHHTTHHHH-HHHCSSCCEEECCSSBCCHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCC--ChHHHHHHHHH-HhcCCccCeEecCCCcCCHHHHHH
Confidence 34677777764 5421 11222 345677777777766 31 1112 2344677777777777763
Q ss_pred CCcccccCCCCcEEEccCCC---CCC--c----ccccCCCCcCEEEccCCC
Q 037969 215 LPSSIGLLANLQTLCLDQSM---LGD--I----AIIGKLKNLEILSFLNSD 256 (300)
Q Consensus 215 lp~~i~~l~~L~~L~l~~~~---l~~--p----~~~~~l~~L~~L~l~~~~ 256 (300)
+-+.+..-..|+.|+|+++. +.. . +.+..-+.|+.|+++.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 23344444567777776542 232 1 333444567777776553
No 169
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=20.03 E-value=1.1e+02 Score=20.32 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=16.7
Q ss_pred cCCCccEEecccCccccccCchhHHhcCCcccEEEeeC
Q 037969 172 ECLQLEFLHISQNTFVEVNIPDNIFKGMKTLRVIDLTR 209 (300)
Q Consensus 172 ~~~~L~~L~l~~~~~~~~~l~~~~~~~l~~L~~L~l~~ 209 (300)
+|.+|+.+.+..+- ..+.+..|.++.+|+.+.+.+
T Consensus 18 ~c~~L~~i~iP~~v---~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQPNI---GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECTTS---SCCCTTSSTTCTTCCCEEECC
T ss_pred CCCCCcEEEcCCch---heEcHHHHhccCCccEEEEcC
Confidence 45555555554332 234444445555555555544
Done!